Summary page for comparison: 'Myo_Epi_vs_Lum_Epi' (HS1188_vs_HS1187) - Project: Breast


Download complete candidate list as tab delimited text file: Myo_Epi_vs_Lum_Epi.txt


Summary of Differential (DE) and Alternative Expression (AE) for all gene loci:

Total Candidate Genes: 6,052 (of 36,953 possible genes)

DE Genes: 4,075

AE Genes: 2,592

Alternative Exon Usage (EU) Genes: 1,263

Alernative Exon Skipping (ES) Genes: 469

Alternative Exon Boundary (AB) Genes: 1,102

Intron Retention (IR) Genes: 196

Cryptic Exon (CE) Genes: 418


Candidate Differential AND Alternative Expression Genes

The following table lists candidate genes ranked according to 'Score'. Only the top 250 genes appear in each list. For a complete list download the results file provided above. To appear in this list, a 'candidate gene' must be differentially expressed at the gene level (DE) or contain at least one alternatively expressed (AE) feature. The 'Score' is based on the fold change as well as other factors for AE events (multiple features supporting the same event, reciprocity, etc.). The 'Event Type' indicates whether the gene was differentially expressed ('DE') or alternatively expressed 'AE'. 'Direction' refers to the direction (+ve/-ve) of the fold change. 'Gain' (+ve) indicates higher expression in library A than library B and vice versa. 'FC' stands for fold change. '# AE Events' is the number of significant alternative expression events observed for each gene. 'AE Codes' refers to various alternative expression subtypes (listed above). The 'Top Feature' is the most significant AE event observed for an AE gene. 'Adjacency' refers to the number of consecutive AE features (potentially supporting the same isoform). 'Adjacency %' refers to the percent of all AE events for a gene that were adjacent to each other.


RankOverall
Rank
ScoreNameGene
Type
Trans.
Count
Exon
Count
Event
Type
DirectionFC# AE
Events
AE CodesTop FeatureAdjacency
%
1111.78FRMD4B'protein_coding'225AEGain95.4921EU ES CE ER4a94.74
2210.41SVIL'protein_coding'342AEGain151.429EU E4a_E5a87.50
339.84SERHL'protein_coding'111AELoss-84.583EU AB CE E5a_E6a0
449.29COL17A1'protein_coding'358DEGain624.120N/ACOL17A1N/A
558.72MME'protein_coding'326DEGain422.010N/AMMEN/A
668.59PDPN'protein_coding'411DEGain386.350N/APDPNN/A
778.40ACTG2'protein_coding'415DEGain338.710N/AACTG2N/A
888.40TP63'protein_coding'717DEGain337.580N/ATP63N/A
998.06A2M'protein_coding'240DEGain267.690N/AA2MN/A
10108.00IL1B'protein_coding'17DEGain256.810N/AIL1BN/A
11117.99CA12'protein_coding'211AEGain15.594EU ES E8a_E10a100.00
12127.92XDH'protein_coding'136AEGain4.2119EU AB E10_Aa86.67
13137.78PIK3R1'protein_coding'418AELoss-11.4115EU ES ENST0000033648392.86
14147.76LAMA3'protein_coding'377AELoss-3.1228EU AB E10a_E11a57.69
15157.74DKK3'protein_coding'311DEGain213.990N/ADKK3N/A
16167.70LMO7'protein_coding'635AELoss-14.947EU ES AB E6_Aa40.00
17177.69GPSM3'protein_coding'413AEGain27.2010EU AB IR E1_Da33.33
18187.67TPM1'protein_coding'921AELoss-21.534EU ES E4a_E5a33.33
19197.65CCND2'protein_coding'15DEGain201.090N/ACCND2N/A
20207.65CD200'protein_coding'410DEGain200.610N/ACD200N/A
21217.62KRT14'protein_coding'18DEGain196.700N/AKRT14N/A
22227.59INPP4B'protein_coding'225AELoss-47.7210EU ES AB CE E1a_E2a100.00
23237.51DMKN'protein_coding'828AELoss-14.1116EU ES AB IR CE ER2a77.78
24247.46MMP3'protein_coding'110DEGain176.460N/AMMP3N/A
25257.44AC090625.5'protein_coding'314DEGain174.110N/AAC090625.5N/A
26267.39AKR1C2'protein_coding'422AELoss-25.2114EU AB IR CE E2_Aa33.33
27277.21NT5C3'protein_coding'618AELoss-14.332EU E2a_E3a100.00
28287.17ERG'protein_coding'1020DEGain143.950N/AERGN/A
29297.16FEZ1'protein_coding'212DEGain143.070N/AFEZ1N/A
30307.09IFT172'protein_coding'250AELoss-44.719EU ES AB IR E44_Aa80.00
31317.01FGF1'protein_coding'1018DEGain129.010N/AFGF1N/A
32326.98AP000926.6'protein_coding'28DEGain125.950N/AAP000926.6N/A
33336.96ACTA2'protein_coding'19DEGain124.331EU ACTA20
34346.92TMTC1'protein_coding'323DEGain121.190N/ATMTC1N/A
35356.90CPNE8'protein_coding'221DEGain119.660N/ACPNE8N/A
36366.81PROS1'protein_coding'318DEGain112.160N/APROS1N/A
37376.76MARK3'protein_coding'321AEGain25.878EU ES E17a_E18a71.43
38386.74DST'protein_coding'9123AEGain578.4987EU ES AB IR CE E16a_E17a63.51
39396.69CLSTN1'protein_coding'319AELoss-11.157EU ES ENST0000037728883.33
40406.67EIF2B3'protein_coding'419AELoss-13.631AB E11_Da0
41416.66JAM3'protein_coding'19DEGain101.380N/AJAM3N/A
42426.64RNASE7'protein_coding'12DEGain99.730N/ARNASE7N/A
43436.61RP11-20F24.3'unprocessed_pseudogene'16DELoss-97.930N/ARP11-20F24.3N/A
44446.53OXTR'protein_coding'14DEGain92.600N/AOXTRN/A
45456.51ANKRD30A'protein_coding'343DELoss-91.330N/AANKRD30AN/A
46466.46SLC27A6'protein_coding'212DEGain87.900N/ASLC27A6N/A
47476.45ITGA1'protein_coding'129DEGain87.530N/AITGA1N/A
48486.44NOTCH4'protein_coding'130DEGain86.770N/ANOTCH4N/A
49496.39TIMP3'protein_coding'28DEGain83.990N/ATIMP3N/A
50506.39MYBPC1'protein_coding'435DELoss-83.630N/AMYBPC1N/A
51516.38POSTN'protein_coding'524DEGain83.210N/APOSTNN/A
52526.35MUCL1'protein_coding'14DELoss-81.560N/AMUCL1N/A
53536.32BRF2'protein_coding'14AELoss-13.371AB E2_Aa0
54546.26PLD5'protein_coding'213DEGain76.720N/APLD5N/A
55556.26CNN1'protein_coding'17DEGain76.620N/ACNN1N/A
56566.21GPR176'protein_coding'13DEGain73.900N/AGPR176N/A
57576.19FST'protein_coding'28DEGain73.220N/AFSTN/A
58586.19PRRX1'protein_coding'25DEGain72.950N/APRRX1N/A
59596.18ODZ2'protein_coding'235DEGain72.280N/AODZ2N/A
60606.17PTPRT'protein_coding'739DEGain72.030N/APTPRTN/A
61616.14SH3D19'protein_coding'325AELoss-8.933EU CE E1a_E2a100.00
62626.12MYLK'protein_coding'744DEGain69.680N/AMYLKN/A
63636.12TARSL2'protein_coding'221AELoss-15.003EU AB CE I15_AR30
64646.04RGS3'protein_coding'1037AELoss-7.3510EU ES CE E26a_E27a100.00
65656.03NRP2'protein_coding'626DEGain65.500N/ANRP2N/A
66666.02LMOD1'protein_coding'39DEGain65.030N/ALMOD1N/A
67676.01SF3B3'protein_coding'229AELoss-12.691CE I17_AR20
68685.99NEXN'protein_coding'515DEGain63.670N/ANEXNN/A
69695.99SCARF2'protein_coding'317DEGain63.660N/ASCARF2N/A
70705.97S100A7'protein_coding'25DELoss-62.560N/AS100A7N/A
71715.94SOBP'protein_coding'312DEGain61.510N/ASOBPN/A
72725.92NCAPD3'protein_coding'135AEGain14.473EU AB E33_Aa0
73735.90MUC1'protein_coding'1222DELoss-26.436EU AB MUC175.00
74745.89KRT16'protein_coding'18AEGain9.693AB CE I7_AR20
75755.88FLRT2'protein_coding'12DEGain58.980N/AFLRT2N/A
76765.88CXCL13'protein_coding'15DELoss-58.750N/ACXCL13N/A
77775.88SPATA5L1'protein_coding'210AELoss-9.8517ES AB IR I8_SR50
78785.87ST8SIA2'protein_coding'26DEGain58.560N/AST8SIA2N/A
79795.87SLK'protein_coding'219AELoss-11.264EU ES ENST00000369755100.00
80805.87AC124276.5'pseudogene'12DEGain58.300N/AAC124276.5N/A
81815.84EGFL9'protein_coding'412DEGain57.420N/AEGFL9N/A
82825.84SPARC'protein_coding'110DEGain57.290N/ASPARCN/A
83835.83TBC1D15'protein_coding'320AELoss-11.771EU E7a_E8a0
84845.76ARHGAP25'protein_coding'415DEGain54.190N/AARHGAP25N/A
85855.75AL353732.14'protein_coding'14DEGain53.820N/AAL353732.14N/A
86865.75RASIP1'protein_coding'112DEGain53.670N/ARASIP1N/A
87875.74CAV1'protein_coding'511DEGain53.401ES CAV10
88885.73MSRB3'protein_coding'27DEGain53.120N/AMSRB3N/A
89895.72DSG3'protein_coding'116DEGain52.580N/ADSG3N/A
90905.70SERPINF1'protein_coding'18DEGain51.910N/ASERPINF1N/A
91915.69CACNA1C'protein_coding'2764DEGain51.740N/ACACNA1CN/A
92925.69FHL1'protein_coding'714DEGain51.570N/AFHL1N/A
93935.69GPM6B'protein_coding'410AEGain87.085EU ES AB ENST00000356942100.00
94945.68TCOF1'protein_coding'428AELoss-9.7021ES AB IR CE E28_Aa0
95955.67AL357148.22'miRNA'11DELoss-50.940N/AAL357148.22N/A
96965.67TCEAL7'protein_coding'26DEGain50.870N/ATCEAL7N/A
97975.66ABCB1'protein_coding'232DEGain50.640N/AABCB1N/A
98985.65FBXO25'protein_coding'413AEGain8.2819AB IR CE E7_Da0
99995.65TFDP2'protein_coding'418AEGain6.482AB E5_Da0
1001005.65PSMG3'protein_coding'37AELoss-11.741AB E4_Aa0
1011015.63CD55'protein_coding'925AELoss-9.681ES E9a_E14b0
1021025.62TNS4'protein_coding'417DEGain49.340N/ATNS4N/A
1031035.62C1orf187'protein_coding'17DEGain49.230N/AC1orf187N/A
1041045.60SEMA5A'protein_coding'123DEGain48.380N/ASEMA5AN/A
1051055.58AGR2'protein_coding'210DELoss-47.980N/AAGR2N/A
1061065.57AL445305.11'pseudogene'12AELoss-12.281AB E2_Aa0
1071075.57KIRREL'protein_coding'520DEGain47.440N/AKIRRELN/A
1081085.57ZP4'protein_coding'112DEGain47.410N/AZP4N/A
1091095.57LEF1'protein_coding'212DEGain47.370N/ALEF1N/A
1101105.55LRP4'protein_coding'239DEGain46.900N/ALRP4N/A
1111115.53NRCAM'protein_coding'638DEGain46.340N/ANRCAMN/A
1121125.51MLPH'protein_coding'421DELoss-45.520N/AMLPHN/A
1131135.49IRX4'protein_coding'15DEGain45.080N/AIRX4N/A
1141145.48COL8A1'protein_coding'25DEGain44.530N/ACOL8A1N/A
1151155.42AEBP1'protein_coding'121DEGain42.820N/AAEBP1N/A
1161165.42SLC5A1'protein_coding'115DELoss-42.700N/ASLC5A1N/A
1171175.41ACAT2'protein_coding'19AEGain2.881AB E9_Aa0
1181185.40LAMB1'protein_coding'440DEGain42.150N/ALAMB1N/A
1191195.39GPC1'protein_coding'19DEGain41.950N/AGPC1N/A
1201205.39ISM1'protein_coding'16DEGain41.920N/AISM1N/A
1211215.38EMILIN1'protein_coding'18DEGain41.780N/AEMILIN1N/A
1221225.37AKAP2'protein_coding'723AEGain224.3418EU ES CE E11a_E13a81.25
1231235.37SCGB3A1'protein_coding'13DELoss-41.280N/ASCGB3A1N/A
1241245.36AZGP1'protein_coding'14DELoss-41.060N/AAZGP1N/A
1251255.35CEACAM6'protein_coding'16DELoss-40.920N/ACEACAM6N/A
1261265.34C16orf7'protein_coding'322AEGain11.4737EU AB IR CE I3_AR157.14
1271275.34ANO1'protein_coding'428DEGain19.3211EU ES ANO180.00
1281285.33FBXW7'protein_coding'416AEGain19.602EU CE E4a_E5a0
1291295.33COL4A1'protein_coding'467DEGain40.310N/ACOL4A1N/A
1301305.33LIMA1'protein_coding'212AELoss-5.657EU AB ER1a100.00
1311315.33MT1E'protein_coding'25DEGain40.210N/AMT1EN/A
1321325.32BBS12'protein_coding'12AELoss-7.671EU E1a_E2a0
1331335.32MAGI3'protein_coding'426AEGain8.622EU AB ENST000003696150
1341345.30TSC22D1'protein_coding'25AEGain2.762EU ES ER1a100.00
1351355.30BMP5'protein_coding'17DEGain39.310N/ABMP5N/A
1361365.29KRT19'protein_coding'16DELoss-39.090N/AKRT19N/A
1371375.29SLPI'protein_coding'14DELoss-39.050N/ASLPIN/A
1381385.29Z95331.2'snRNA_pseudogene'11DEGain38.990N/AZ95331.2N/A
1391395.28MT1M'protein_coding'13DEGain38.900N/AMT1MN/A
1401405.27UNC5C'protein_coding'218DEGain38.680N/AUNC5CN/A
1411415.27FRMD4A'protein_coding'532AELoss-14.1031EU AB CE I2_AR1386.36
1421425.27TUBB2B'protein_coding'14DEGain38.520N/ATUBB2BN/A
1431435.25GRHL2'protein_coding'320AELoss-35.898AB IR CE E14_Aa0
1441445.25THY1'protein_coding'14DEGain38.100N/ATHY1N/A
1451455.25AGPAT1'protein_coding'614AEGain19.073EU ES AB ENST00000395499100.00
1461465.24SLC44A4'protein_coding'325DELoss-37.850N/ASLC44A4N/A
1471475.24ITGB3'protein_coding'115DEGain37.840N/AITGB3N/A
1481485.24PALLD'protein_coding'426AELoss-6.9113EU ES E3a_E4a83.33
1491495.24GNA11'protein_coding'17AELoss-8.352AB CE I4_AR30
1501505.24ARHGEF11'protein_coding'345AEGain6.813EU E40a_E41a100.00
1511515.23TGM2'protein_coding'213DELoss-37.520N/ATGM2N/A
1521525.23SMARCA2'protein_coding'1150AELoss-22.0415EU ES AB IR E31a_E32a85.71
1531535.22NECAB1'protein_coding'114DEGain37.400N/ANECAB1N/A
1541545.21FHOD3'protein_coding'225DEGain37.020N/AFHOD3N/A
1551555.19LYST'protein_coding'258AELoss-7.222EU CE I28_AR10
1561565.19NDN'protein_coding'11DEGain36.440N/ANDNN/A
1571575.18SASH1'protein_coding'324AEGain18.133AB CE I1_AR40
1581585.18TCN1'protein_coding'19DELoss-36.240N/ATCN1N/A
1591595.16ELMO2'protein_coding'429AELoss-10.131AB E4_Da0
1601605.16CXCL14'protein_coding'14DEGain35.780N/ACXCL14N/A
1611615.15C4orf49'protein_coding'26DEGain35.580N/AC4orf49N/A
1621625.14SHB'protein_coding'316AEGain5.205IR CE I10_SR10
1631635.14ALDH3B2'protein_coding'110DELoss-35.240N/AALDH3B2N/A
1641645.14MMP10'protein_coding'110DEGain35.220N/AMMP10N/A
1651655.13CALML3'protein_coding'11DEGain35.000N/ACALML3N/A
1661665.13DSC3'protein_coding'217DEGain34.930N/ADSC3N/A
1671675.12RGS1'protein_coding'25DELoss-34.890N/ARGS1N/A
1681685.12AXL'protein_coding'220DEGain34.840N/AAXLN/A
1691695.12CORO2B'protein_coding'214DEGain34.770N/ACORO2BN/A
1701705.12SORCS1'protein_coding'330DEGain34.660N/ASORCS1N/A
1711715.11CLIP3'protein_coding'114DEGain34.490N/ACLIP3N/A
1721725.11AL731567.6'protein_coding'113AELoss-17.704EU AB ER10a0.00
1731735.10DEXI'protein_coding'12AELoss-9.184AB CE I1_AR90
1741745.09C17orf81'protein_coding'412AELoss-29.4622EU AB IR E4_Da0.00
1751755.09LIMS2'protein_coding'1232DEGain34.130N/ALIMS2N/A
1761765.09C6orf105'protein_coding'311DEGain34.100N/AC6orf105N/A
1771775.09ANGPTL2'protein_coding'26DEGain34.070N/AANGPTL2N/A
1781785.08TRIM5'protein_coding'822AEGain5.951AB E4_Aa0
1791795.08SCG5'protein_coding'16DEGain33.750N/ASCG5N/A
1801805.07COL8A2'protein_coding'38DEGain33.680N/ACOL8A2N/A
1811815.06RBMS3'protein_coding'418DEGain33.370N/ARBMS3N/A
1821825.05CYP4Z2P'protein_coding'110DELoss-33.200N/ACYP4Z2PN/A
1831835.04FGF2'protein_coding'24DEGain32.950N/AFGF2N/A
1841845.03GAS1'protein_coding'11DEGain32.720N/AGAS1N/A
1851855.03SDR'protein_coding'12DEGain32.710N/ASDRN/A
1861865.02KRTAP21-1'protein_coding'11DELoss-32.550N/AKRTAP21-1N/A
1871875.02TMEM178'protein_coding'26DEGain32.390N/ATMEM178N/A
1881885.01SLC6A14'protein_coding'114DELoss-32.241EU SLC6A140
1891895.01SERPINB7'protein_coding'210DELoss-32.170N/ASERPINB7N/A
1901904.99ODZ3'protein_coding'127DEGain31.890N/AODZ3N/A
1911914.99CTNND1'protein_coding'725AELoss-23.444EU ES ENST000003613320.00
1921924.97EHD3'protein_coding'16DEGain31.420N/AEHD3N/A
1931934.97LTBP2'protein_coding'136DEGain31.280N/ALTBP2N/A
1941944.96AC093307.5'protein_coding'12DEGain31.230N/AAC093307.5N/A
1951954.96OLFM4'protein_coding'15DELoss-31.160N/AOLFM4N/A
1961964.96C20orf59'protein_coding'215DEGain31.140N/AC20orf59N/A
1971974.96RP1-21O18.1'protein_coding'724AEGain11.0015EU AB E12a_E13a50.00
1981984.95AC093283.3'protein_coding'123AELoss-6.1113EU E4a_E5a91.67
1991994.95KIF1A'protein_coding'353DEGain30.880N/AKIF1AN/A
2002004.94SELENBP1'protein_coding'112DELoss-30.750N/ASELENBP1N/A
2012014.94ABLIM1'protein_coding'1540AEGain9.853EU ES AB E11a_E13a100.00
2022024.94KCNMB1'protein_coding'14DEGain30.700N/AKCNMB1N/A
2032034.93ALOX5'protein_coding'114DELoss-30.520N/AALOX5N/A
2042044.93S100A8'protein_coding'25DELoss-30.490N/AS100A8N/A
2052054.92GPR110'protein_coding'521DELoss-30.230N/AGPR110N/A
2062064.92TMC5'protein_coding'323DELoss-30.170N/ATMC5N/A
2072074.91GRINL1A'protein_coding'1127AELoss-5.7831EU AB CE ER2a95.65
2082084.91ADAMTS5'protein_coding'18DEGain30.120N/AADAMTS5N/A
2092094.90RAB39'protein_coding'12DEGain29.800N/ARAB39N/A
2102104.89RP11-20F24.6'processed_pseudogene'11DELoss-29.700N/ARP11-20F24.6N/A
2112114.89NUDT11'protein_coding'23DEGain29.570N/ANUDT11N/A
2122124.88VTCN1'protein_coding'512DELoss-29.540N/AVTCN1N/A
2132134.87INTS6'protein_coding'220AEGain7.5222AB IR CE I2_SR20
2142144.87DBC1'protein_coding'313DEGain29.160N/ADBC1N/A
2152154.86AFAP1L2'protein_coding'321DEGain29.090N/AAFAP1L2N/A
2162164.86S100A9'protein_coding'13DELoss-29.000N/AS100A9N/A
2172174.86MYO6'protein_coding'540AELoss-51.5315EU ES AB IR CE E29a_E30a87.50
2182184.86DIAPH1'protein_coding'638AELoss-6.121ES E1a_E3a0
2192194.86SERPINB3'protein_coding'210DELoss-28.970N/ASERPINB3N/A
2202204.85AC007362.4'pseudogene'13DEGain28.940N/AAC007362.4N/A
2212214.85C13orf33'protein_coding'15DEGain28.790N/AC13orf33N/A
2222224.84ECHDC1'protein_coding'922AELoss-11.862EU ES ER2a100.00
2232234.82ANK3'protein_coding'1061AELoss-52.8910EU ES AB CE E25a_E27a100.00
2242244.82GPSM2'protein_coding'318AELoss-5.191AB E14_Aa0
2252254.81C17orf80'protein_coding'26AELoss-15.3814EU AB IR CE I4_SR10
2262264.81IDO1'protein_coding'110DELoss-28.100N/AIDO1N/A
2272274.81FBP1'protein_coding'17DELoss-28.040N/AFBP1N/A
2282284.81EEF1A2'protein_coding'29DELoss-28.020N/AEEF1A2N/A
2292294.80IGFL1'protein_coding'14DELoss-27.860N/AIGFL1N/A
2302304.80MT2A'protein_coding'13DEGain27.830N/AMT2AN/A
2312314.80UCP2'protein_coding'18DELoss-27.800N/AUCP2N/A
2322324.79TMPRSS2'protein_coding'215DELoss-27.720N/ATMPRSS2N/A
2332334.79MAOB'protein_coding'217DEGain27.652EU MAOB0.00
2342344.78PIGR'protein_coding'111DELoss-27.490N/APIGRN/A
2352354.78TNIP3'protein_coding'213DELoss-27.470N/ATNIP3N/A
2362364.77MT1X'protein_coding'35DEGain27.350N/AMT1XN/A
2372374.77TFPT'protein_coding'413AEGain17.057AB IR E3_Aa0
2382384.77RELL1'protein_coding'17AELoss-6.6414AB IR I6_SR90
2392394.77CTNS'protein_coding'317AELoss-8.6120AB IR E3_Aa0
2402404.77ISY1'protein_coding'316AELoss-7.351ES E4a_E9a0
2412414.77ZNF688'protein_coding'515AELoss-16.758EU AB CE I9_SR300
2422424.75THADA'protein_coding'1357AELoss-21.7916EU ES AB CE I26_AR461.54
2432434.75PI3'protein_coding'13DELoss-26.970N/API3N/A
2442444.74CYP1A1'protein_coding'412DELoss-26.791EU CYP1A10
2452454.74TSPAN1'protein_coding'210DELoss-26.760N/ATSPAN1N/A
2462464.74C9orf150'protein_coding'12DELoss-26.700N/AC9orf150N/A
2472474.74SH2D5'protein_coding'19DEGain26.680N/ASH2D5N/A
2482484.72NGFR'protein_coding'16DEGain26.440N/ANGFRN/A
2492494.72AC074378.4'protein_coding'11DEGain26.420N/AAC074378.4N/A
2502504.72C15orf48'protein_coding'26DELoss-26.370N/AC15orf48N/A
2512514.71CXCL17'protein_coding'14DELoss-26.230N/ACXCL17N/A


Candidate Alternative Expression Genes

The following table lists candidate genes ranked according to 'Score'. Only the top 250 genes appear in each list. For a complete list download the results file provided above. To appear in this list, a 'candidate gene' must be differentially expressed at the gene level (DE) or contain at least one alternatively expressed (AE) feature. The 'Score' is based on the fold change as well as other factors for AE events (multiple features supporting the same event, reciprocity, etc.). The 'Event Type' indicates whether the gene was differentially expressed ('DE') or alternatively expressed 'AE'. 'Direction' refers to the direction (+ve/-ve) of the fold change. 'Gain' (+ve) indicates higher expression in library A than library B and vice versa. 'FC' stands for fold change. '# AE Events' is the number of significant alternative expression events observed for each gene. 'AE Codes' refers to various alternative expression subtypes (listed above). The 'Top Feature' is the most significant AE event observed for an AE gene. 'Adjacency' refers to the number of consecutive AE features (potentially supporting the same isoform). 'Adjacency %' refers to the percent of all AE events for a gene that were adjacent to each other.


RankOverall
Rank
ScoreNameGene
Type
Trans.
Count
Exon
Count
Event
Type
DirectionFC# AE
Events
AE CodesTop FeatureAdjacency
%
1111.78FRMD4B'protein_coding'225AEGain95.4921EU ES CE ER4a94.74
2210.41SVIL'protein_coding'342AEGain151.429EU E4a_E5a87.50
339.84SERHL'protein_coding'111AELoss-84.583EU AB CE E5a_E6a0
4117.99CA12'protein_coding'211AEGain15.594EU ES E8a_E10a100.00
5127.92XDH'protein_coding'136AEGain4.2119EU AB E10_Aa86.67
6137.78PIK3R1'protein_coding'418AELoss-11.4115EU ES ENST0000033648392.86
7147.76LAMA3'protein_coding'377AELoss-3.1228EU AB E10a_E11a57.69
8167.70LMO7'protein_coding'635AELoss-14.947EU ES AB E6_Aa40.00
9177.69GPSM3'protein_coding'413AEGain27.2010EU AB IR E1_Da33.33
10187.67TPM1'protein_coding'921AELoss-21.534EU ES E4a_E5a33.33
11227.59INPP4B'protein_coding'225AELoss-47.7210EU ES AB CE E1a_E2a100.00
12237.51DMKN'protein_coding'828AELoss-14.1116EU ES AB IR CE ER2a77.78
13267.39AKR1C2'protein_coding'422AELoss-25.2114EU AB IR CE E2_Aa33.33
14277.21NT5C3'protein_coding'618AELoss-14.332EU E2a_E3a100.00
15307.09IFT172'protein_coding'250AELoss-44.719EU ES AB IR E44_Aa80.00
16336.96ACTA2'protein_coding'19DEGain124.331EU ACTA20
17376.76MARK3'protein_coding'321AEGain25.878EU ES E17a_E18a71.43
18386.74DST'protein_coding'9123AEGain578.4987EU ES AB IR CE E16a_E17a63.51
19396.69CLSTN1'protein_coding'319AELoss-11.157EU ES ENST0000037728883.33
20406.67EIF2B3'protein_coding'419AELoss-13.631AB E11_Da0
21536.32BRF2'protein_coding'14AELoss-13.371AB E2_Aa0
22616.14SH3D19'protein_coding'325AELoss-8.933EU CE E1a_E2a100.00
23636.12TARSL2'protein_coding'221AELoss-15.003EU AB CE I15_AR30
24646.04RGS3'protein_coding'1037AELoss-7.3510EU ES CE E26a_E27a100.00
25676.01SF3B3'protein_coding'229AELoss-12.691CE I17_AR20
26725.92NCAPD3'protein_coding'135AEGain14.473EU AB E33_Aa0
27735.90MUC1'protein_coding'1222DELoss-26.436EU AB MUC175.00
28745.89KRT16'protein_coding'18AEGain9.693AB CE I7_AR20
29775.88SPATA5L1'protein_coding'210AELoss-9.8517ES AB IR I8_SR50
30795.87SLK'protein_coding'219AELoss-11.264EU ES ENST00000369755100.00
31835.83TBC1D15'protein_coding'320AELoss-11.771EU E7a_E8a0
32875.74CAV1'protein_coding'511DEGain53.401ES CAV10
33935.69GPM6B'protein_coding'410AEGain87.085EU ES AB ENST00000356942100.00
34945.68TCOF1'protein_coding'428AELoss-9.7021ES AB IR CE E28_Aa0
35985.65FBXO25'protein_coding'413AEGain8.2819AB IR CE E7_Da0
36995.65TFDP2'protein_coding'418AEGain6.482AB E5_Da0
371005.65PSMG3'protein_coding'37AELoss-11.741AB E4_Aa0
381015.63CD55'protein_coding'925AELoss-9.681ES E9a_E14b0
391065.57AL445305.11'pseudogene'12AELoss-12.281AB E2_Aa0
401175.41ACAT2'protein_coding'19AEGain2.881AB E9_Aa0
411225.37AKAP2'protein_coding'723AEGain224.3418EU ES CE E11a_E13a81.25
421265.34C16orf7'protein_coding'322AEGain11.4737EU AB IR CE I3_AR157.14
431275.34ANO1'protein_coding'428DEGain19.3211EU ES ANO180.00
441285.33FBXW7'protein_coding'416AEGain19.602EU CE E4a_E5a0
451305.33LIMA1'protein_coding'212AELoss-5.657EU AB ER1a100.00
461325.32BBS12'protein_coding'12AELoss-7.671EU E1a_E2a0
471335.32MAGI3'protein_coding'426AEGain8.622EU AB ENST000003696150
481345.30TSC22D1'protein_coding'25AEGain2.762EU ES ER1a100.00
491415.27FRMD4A'protein_coding'532AELoss-14.1031EU AB CE I2_AR1386.36
501435.25GRHL2'protein_coding'320AELoss-35.898AB IR CE E14_Aa0
511455.25AGPAT1'protein_coding'614AEGain19.073EU ES AB ENST00000395499100.00
521485.24PALLD'protein_coding'426AELoss-6.9113EU ES E3a_E4a83.33
531495.24GNA11'protein_coding'17AELoss-8.352AB CE I4_AR30
541505.24ARHGEF11'protein_coding'345AEGain6.813EU E40a_E41a100.00
551525.23SMARCA2'protein_coding'1150AELoss-22.0415EU ES AB IR E31a_E32a85.71
561555.19LYST'protein_coding'258AELoss-7.222EU CE I28_AR10
571575.18SASH1'protein_coding'324AEGain18.133AB CE I1_AR40
581595.16ELMO2'protein_coding'429AELoss-10.131AB E4_Da0
591625.14SHB'protein_coding'316AEGain5.205IR CE I10_SR10
601725.11AL731567.6'protein_coding'113AELoss-17.704EU AB ER10a0.00
611735.10DEXI'protein_coding'12AELoss-9.184AB CE I1_AR90
621745.09C17orf81'protein_coding'412AELoss-29.4622EU AB IR E4_Da0.00
631785.08TRIM5'protein_coding'822AEGain5.951AB E4_Aa0
641885.01SLC6A14'protein_coding'114DELoss-32.241EU SLC6A140
651914.99CTNND1'protein_coding'725AELoss-23.444EU ES ENST000003613320.00
661974.96RP1-21O18.1'protein_coding'724AEGain11.0015EU AB E12a_E13a50.00
671984.95AC093283.3'protein_coding'123AELoss-6.1113EU E4a_E5a91.67
682014.94ABLIM1'protein_coding'1540AEGain9.853EU ES AB E11a_E13a100.00
692074.91GRINL1A'protein_coding'1127AELoss-5.7831EU AB CE ER2a95.65
702134.87INTS6'protein_coding'220AEGain7.5222AB IR CE I2_SR20
712174.86MYO6'protein_coding'540AELoss-51.5315EU ES AB IR CE E29a_E30a87.50
722184.86DIAPH1'protein_coding'638AELoss-6.121ES E1a_E3a0
732224.84ECHDC1'protein_coding'922AELoss-11.862EU ES ER2a100.00
742234.82ANK3'protein_coding'1061AELoss-52.8910EU ES AB CE E25a_E27a100.00
752244.82GPSM2'protein_coding'318AELoss-5.191AB E14_Aa0
762254.81C17orf80'protein_coding'26AELoss-15.3814EU AB IR CE I4_SR10
772334.79MAOB'protein_coding'217DEGain27.652EU MAOB0.00
782374.77TFPT'protein_coding'413AEGain17.057AB IR E3_Aa0
792384.77RELL1'protein_coding'17AELoss-6.6414AB IR I6_SR90
802394.77CTNS'protein_coding'317AELoss-8.6120AB IR E3_Aa0
812404.77ISY1'protein_coding'316AELoss-7.351ES E4a_E9a0
822414.77ZNF688'protein_coding'515AELoss-16.758EU AB CE I9_SR300
832424.75THADA'protein_coding'1357AELoss-21.7916EU ES AB CE I26_AR461.54
842444.74CYP1A1'protein_coding'412DELoss-26.791EU CYP1A10
852544.71VNN3'protein_coding'513DELoss-26.123ES AB VNN30
862634.67VLDLR'protein_coding'730AEGain6.321AB E18_Da0
872644.67GYPC'protein_coding'411DEGain13.322EU GYPC100.00
882654.66TNC'protein_coding'528AEGain302.8414EU ES AB ENST0000034523066.67
892664.66ACTN1'protein_coding'224AEGain29.772EU ES E18a_E20a0.00
902694.65SPTBN1'protein_coding'338AEGain5.982EU ES ER2a100.00
912744.64RG9MTD3'protein_coding'311AEGain8.402AB E8_Aa0
922764.64SLC30A4'protein_coding'18AEGain2.699EU AB E6a_E7a0
932774.63PBRM1'protein_coding'940AEGain6.811ES E27a_E30a0
942814.62KIAA1217'protein_coding'930AEGain7.435EU ES CE E22a_E25a66.67
952864.59AC073995.6'protein_coding'15DELoss-24.101EU AC073995.60
962904.59ELF1'protein_coding'312AELoss-16.512EU E1a_E2a100.00
972994.56DEFB1'protein_coding'12DELoss-23.551EU DEFB10
983044.54COL4A2'protein_coding'461DEGain23.312EU COL4A20.00
993054.54NDE1'protein_coding'515AEGain21.331AB E12_Aa0
1003064.53DOK5'protein_coding'210AEGain6.624IR I1_SR20
1013114.52AARSD1'protein_coding'423AELoss-5.0710EU AB E4a_E5a85.71
1023174.50CDH13'protein_coding'114DEGain22.661EU CDH130
1033264.48ATP5S'protein_coding'39AEGain5.404AB CE E6_Aa0
1043274.47SERF2'protein_coding'1330AEGain5.1512EU AB E10_Da87.50
1053314.46SPTAN1'protein_coding'565AELoss-6.897ES AB IR E32_Aa0
1063324.46BUD13'protein_coding'213AELoss-6.253AB E6_Da0
1073414.42AL603832.28'protein_coding'17AEGain5.861AB E5_Aa0
1083434.42BBX'protein_coding'528AELoss-5.561ES ENST000004021630
1093454.41ACTR3B'protein_coding'418AELoss-5.833EU AB E12_Aa0.00
1103464.40DPF2'protein_coding'111AELoss-5.812CE I10_AR20
1113484.40HPCAL1'protein_coding'27AELoss-13.5310AB CE E4_Aa0
1123544.38FAM126A'protein_coding'316DEGain11.343EU ES FAM126A100.00
1133564.37MAP3K14'protein_coding'222AELoss-5.684EU AB CE E14_Aa0.00
1143624.36ARHGAP19'protein_coding'617AEGain26.602EU E2a_E3a100.00
1153644.35RHOF'protein_coding'15AELoss-12.922EU E3a_E4a100.00
1163684.34ARHGEF3'protein_coding'213AEGain4.274EU ES E4a_E5a33.33
1173704.33SLC28A3'protein_coding'118DELoss-20.151CE SLC28A30
1183714.33FXR2'protein_coding'117AELoss-6.0515AB IR I120
1193724.32C20orf119'protein_coding'925AELoss-11.424EU AB E16_Da0
1203734.32RBM12B'protein_coding'26AEGain17.043AB E3_Aa0
1213754.32STX19'protein_coding'12AEGain5.701AB E2_Aa0
1223764.32UTP20'protein_coding'162AELoss-5.723EU AB CE I12_AR10
1233814.31MYSM1'protein_coding'120AEGain5.606ES AB CE E4a_E7a0
1243834.30LYZ'protein_coding'14AELoss-30.534EU E3a_E4a100.00
1253864.30HLA-DPB1'protein_coding'818AELoss-7.154EU AB ER1b0
1263904.28PRDM2'protein_coding'922AEGain4.764EU ES E11a_E15a66.67
1273944.27RBM47'protein_coding'413DELoss-19.321ES RBM470
1283964.27ZNF587'protein_coding'13AELoss-16.595EU AB IR E1a_E2a0
1293974.26C15orf44'protein_coding'214AELoss-6.101AB E3_Aa0
1303994.26KRT17'protein_coding'210DEGain19.181AB KRT170
1314014.25SORBS2'protein_coding'639DELoss-19.061AB SORBS20
1324064.25SORBS1'protein_coding'1643AEGain23.7425EU ES AB E7a_E8a81.82
1334074.25HLA-DMA'protein_coding'513DELoss-18.981AB HLA-DMA0
1344104.23PLA2G4B'protein_coding'639AEGain2.977EU ES AB E2_Aa40.00
1354114.23KIAA0226'protein_coding'323AEGain5.641EU E12a_E13a0
1364144.22DIAPH2'protein_coding'534AELoss-21.301ES ENST000003730540
1374234.18C10orf116'protein_coding'25AEGain3.011AB E3_Da0
1384254.17AC073995.6'protein_coding'151DELoss-18.056EU ES AC073995.60.00
1394294.16AC008013.8'protein_coding'112DELoss-17.903AB IR AC008013.80
1404324.16ALPK1'protein_coding'221AEGain5.391AB E7_Da0
1414364.15CA8'protein_coding'19DELoss-17.771AB CA80
1424374.15INTS12'protein_coding'312AELoss-10.518EU AB CE I4_AR20.00
1434434.14NIN'protein_coding'943AELoss-19.2861EU ES AB IR CE E20_Da0.00
1444444.14CRELD1'protein_coding'416AEGain4.741AB E7_Aa0
1454514.13EPHA1'protein_coding'118AEGain5.781AB E17_Da0
1464524.13RFXANK'protein_coding'413AEGain5.981AB E10_Aa0
1474604.11CAPN3'protein_coding'1039AEGain3.272ES AB E21_Da0
1484624.11RORA'protein_coding'315AEGain2.072EU AB E5_Aa0
1494654.10MIA3'protein_coding'844AELoss-4.153EU ER7c100.00
1504664.10FBXO5'protein_coding'27AELoss-5.071EU E2a_E3a0
1514674.10SLC11A2'protein_coding'319AELoss-11.052EU ES ENST00000394904100.00
1524694.10RBL1'protein_coding'223AEGain11.1120EU E3a_E4a68.42
1534724.09HAP1'protein_coding'415AEGain5.615EU E7a_E8a25.00
1544764.09MAST2'protein_coding'336AELoss-12.2265EU AB IR I14_SR10
1554804.08KIAA1641'protein_coding'549DELoss-16.8913EU AB KIAA164145.45
1564814.08EFEMP1'protein_coding'416DEGain16.871ES EFEMP10
1574824.07CRYZL1'protein_coding'625AEGain5.742EU AB E17_Db0
1584854.07WDR46'protein_coding'115AELoss-4.701AB E4_Da0
1594884.06PIK3R3'protein_coding'415DELoss-16.693EU ES AB PIK3R30.00
1604924.04NEBL'protein_coding'537DELoss-9.408EU AB CE NEBL75.00
1614964.03NCK1'protein_coding'14AELoss-13.281CE I2_AR20
1625014.01TRIM29'protein_coding'19DEGain9.242EU TRIM29100.00
1635093.99NSFL1C'protein_coding'617AEGain6.653EU ES E3a_E4a100.00
1645113.99P4HA1'protein_coding'421AELoss-4.913AB CE E10_Aa0
1655123.99MPPE1'protein_coding'517AEGain5.1613EU ES AB IR E12_Aa37.50
1665173.98SEC31A'protein_coding'640AELoss-6.0210EU ES AB E28a_E29a62.50
1675213.97AC091742.5'protein_coding'120DELoss-15.681ES AC091742.50
1685223.97LEO1'protein_coding'214AELoss-6.589EU AB IR I9_SR1100.00
1695283.95SENP2'protein_coding'117AELoss-12.083AB E17_Aa0
1705293.95SDCBP2'protein_coding'513AEGain2.652AB E3_Aa0
1715403.92C2orf49'protein_coding'28AEGain13.668AB IR E2_Da0
1725423.92TPD52'protein_coding'210AELoss-24.912EU ES ER1a100.00
1735453.91NAV1'protein_coding'840AELoss-5.413EU E6a_E7a0.00
1745473.90LCP1'protein_coding'221DEGain14.902EU AB LCP10
1755513.89AC024937.21'protein_coding'117AEGain5.471CE I1_AR20
1765523.89HIBCH'protein_coding'723AEGain10.782AB CE I1_AR70
1775533.89TPM2'protein_coding'518DEGain14.826EU ES AB TPM250.00
1785563.89FBXO27'protein_coding'16AEGain6.186EU E5a_E6a80.00
1795623.88DNAJC17'protein_coding'111AELoss-9.874AB IR I10_AR10
1805633.88S1PR3'protein_coding'23AEGain12.091AB E2_Aa0
1815663.87TBC1D23'protein_coding'220AELoss-9.947EU ES CE E14a_E16a80.00
1825693.86MCART1'protein_coding'25AELoss-9.532EU AB E1_Db0
1835743.84ZNF433'protein_coding'14AEGain4.741AB E3_Aa0
1845753.84CFDP1'protein_coding'17AEGain9.721AB E6_Aa0
1855763.84CPA4'protein_coding'111AELoss-3.404EU AB E9_Da50.00
1865783.84NEDD4L'protein_coding'634AELoss-10.627EU ES AB ER15a75.00
1875843.82PCYT1A'protein_coding'110AELoss-4.541AB E7_Aa0
1885873.82CELSR1'protein_coding'337AEGain3.212EU AB E36_Da0
1895883.82METTL8'protein_coding'416AELoss-4.441AB E2_Da0
1905903.82ATHL1'protein_coding'631DELoss-14.111EU ATHL10
1915933.81DHX32'protein_coding'313AEGain4.031AB E7_Da0
1925973.80PRR4'protein_coding'14AELoss-4.941EU ER1a0
1936013.80PCNXL3'protein_coding'135AELoss-5.001AB E30_Aa0
1946023.80FIP1L1'protein_coding'318AELoss-5.312IR I170
1956083.79NCOA4'protein_coding'516AELoss-8.951ES E2a_E4a0
1966093.78RNF111'protein_coding'215AELoss-5.291CE I11_AR10
1976113.78ATP6V1C2'protein_coding'214AEGain3.209EU AB E6_Aa57.14
1986133.77KANK1'protein_coding'825AELoss-2.422ES AB E10d_E12a0
1996143.77AGBL5'protein_coding'319AEGain4.991AB E14_Da0
2006273.75MYL6'protein_coding'39AEGain3.985EU ES E5a_E6a100.00
2016303.74MYH10'protein_coding'446AELoss-4.2931ES AB IR E42_Aa0
2026313.74SFI1'protein_coding'438AEGain3.615EU AB E18_Aa66.67
2036333.74SLC38A10'protein_coding'217AEGain4.622EU AB E16_Aa0
2046353.73CNOT6'protein_coding'318AELoss-4.971AB E13_Aa0
2056383.73TCTN1'protein_coding'827AELoss-11.182ES AB E18_Aa0
2066453.72TNFRSF1B'protein_coding'311DELoss-13.141EU TNFRSF1B0
2076483.71PPFIBP2'protein_coding'124AELoss-12.593AB E24_Aa0
2086513.70MNS1'protein_coding'110AELoss-10.683AB E1_Da0
2096543.69LTBP4'protein_coding'541AELoss-4.704ES AB E15_Aa0.00
2106593.68JUB'protein_coding'311AELoss-4.373AB CE E5_Aa0
2116603.68LTBP1'protein_coding'851AEGain2.447EU AB E5_Ac100.00
2126663.67PRRG2'protein_coding'16AEGain4.231AB E2_Aa0
2136703.67JAG1'protein_coding'126DEGain12.701JAG10
2146713.67FAM82B'protein_coding'213AEGain4.6610EU ES AB IR E9_Da60.00
2156763.66AC007938.1'protein_coding'15AEGain4.736AB IR I4_AR10
2166773.66ITPR1'protein_coding'464AELoss-2.3411EU CE I44_AR1012.50
2176793.66PHACTR4'protein_coding'524AELoss-11.156EU ES AB E3a_E5b75.00
2186803.66SYTL2'protein_coding'723DELoss-12.605EU AB SYTL20.00
2196813.65C9orf30'protein_coding'620AEGain8.1614EU E9a_E10a76.92
2206853.65RMND5B'protein_coding'212AEGain8.552AB E5_Aa0
2216863.65GGTL3'protein_coding'319AEGain4.901AB E4_Da0
2226873.65RP11-504P24.2'unprocessed_pseudogene'14DELoss-7.552EU RP11-504P24.2100.00
2236933.64HERC2P2'protein_coding'128AEGain5.282EU CE I23_AR30
2247013.63FKBP15'protein_coding'128AELoss-5.2622EU AB IR E25_Da0.00
2257033.62GRHL1'protein_coding'426DELoss-12.341ES GRHL10
2267043.62DDX39'protein_coding'212AELoss-4.886AB IR CE I30
2277053.62BNIP2'protein_coding'212AELoss-8.067EU AB IR I4_AR20
2287063.61HEG1'protein_coding'117DEGain12.252EU HEG10.00
2297073.61NAB2'protein_coding'411AELoss-10.891AB E2_Aa0
2307123.60TTBK2'protein_coding'322AELoss-3.953AB E11_Aa0
2317143.60MAP3K12'protein_coding'115AEGain9.295EU AB E11a_E12a0.00
2327163.60ASB6'protein_coding'26AELoss-9.511AB E2_Aa0
2337213.59MTSS1'protein_coding'420DEGain12.072EU AB MTSS10
2347253.59AKAP9'protein_coding'760AEGain4.425EU ES AB E19a_E20a66.67
2357263.59CSPP1'protein_coding'232AEGain4.144EU AB CE E4_Da0
2367283.58FAM13A1'protein_coding'325AEGain2.376EU E5a_E6a40.00
2377333.57CNTNAP3B'protein_coding'629AEGain12.332AB E8_Da0
2387373.56RP11-34P13.11'processed_pseudogene'12DELoss-11.821AB RP11-34P13.110
2397383.56AC004053.1'protein_coding'432AEGain4.437AB CE I2_AR30
2407393.56ZNF280D'protein_coding'527AEGain4.781ES E2a_E4a0
2417433.56ZNF707'protein_coding'16AEGain4.881ES E1a_E3a0
2427463.55CCT6B'protein_coding'114AEGain4.302EU E10a_E11a0.00
2437483.54MCAT'protein_coding'24AELoss-7.2410ES AB IR I20
2447503.54KIAA1967'protein_coding'222AEGain9.361EU E2a_E3a0
2457523.54LOX'protein_coding'28AEGain3.793AB CE E8_Aa0
2467533.53PPP1R12B'protein_coding'936AELoss-2.5812EU AB CE ER21a28.57
2477553.53DHX16'protein_coding'222AELoss-3.142EU E10a_E11a100.00
2487573.53LARGE'protein_coding'420AELoss-3.413EU CE I3_AR260
2497583.52TEX14'protein_coding'334AEGain2.4413EU ES AB IR I133.33
2507593.52PRPF40B'protein_coding'431AEGain10.209EU AB E25_Aa0.00
2517613.52RTN4IP1'protein_coding'19AEGain7.623EU AB E9_Aa0.00


Candidate Differential and Alternative Expression Genes (Gain ONLY)

The following table lists candidate genes ranked according to 'Score'. Only the top 250 genes appear in each list. For a complete list download the results file provided above. To appear in this list, a 'candidate gene' must be differentially expressed at the gene level (DE) or contain at least one alternatively expressed (AE) feature. The 'Score' is based on the fold change as well as other factors for AE events (multiple features supporting the same event, reciprocity, etc.). The 'Event Type' indicates whether the gene was differentially expressed ('DE') or alternatively expressed 'AE'. 'Direction' refers to the direction (+ve/-ve) of the fold change. 'Gain' (+ve) indicates higher expression in library A than library B and vice versa. 'FC' stands for fold change. '# AE Events' is the number of significant alternative expression events observed for each gene. 'AE Codes' refers to various alternative expression subtypes (listed above). The 'Top Feature' is the most significant AE event observed for an AE gene. 'Adjacency' refers to the number of consecutive AE features (potentially supporting the same isoform). 'Adjacency %' refers to the percent of all AE events for a gene that were adjacent to each other.


RankOverall
Rank
ScoreNameGene
Type
Trans.
Count
Exon
Count
Event
Type
DirectionFC# AE
Events
AE CodesTop FeatureAdjacency
%
1111.78FRMD4B'protein_coding'225AEGain95.4921EU ES CE ER4a94.74
2210.41SVIL'protein_coding'342AEGain151.429EU E4a_E5a87.50
349.29COL17A1'protein_coding'358DEGain624.120N/ACOL17A1N/A
458.72MME'protein_coding'326DEGain422.010N/AMMEN/A
568.59PDPN'protein_coding'411DEGain386.350N/APDPNN/A
678.40ACTG2'protein_coding'415DEGain338.710N/AACTG2N/A
788.40TP63'protein_coding'717DEGain337.580N/ATP63N/A
898.06A2M'protein_coding'240DEGain267.690N/AA2MN/A
9108.00IL1B'protein_coding'17DEGain256.810N/AIL1BN/A
10117.99CA12'protein_coding'211AEGain15.594EU ES E8a_E10a100.00
11127.92XDH'protein_coding'136AEGain4.2119EU AB E10_Aa86.67
12157.74DKK3'protein_coding'311DEGain213.990N/ADKK3N/A
13177.69GPSM3'protein_coding'413AEGain27.2010EU AB IR E1_Da33.33
14197.65CCND2'protein_coding'15DEGain201.090N/ACCND2N/A
15207.65CD200'protein_coding'410DEGain200.610N/ACD200N/A
16217.62KRT14'protein_coding'18DEGain196.700N/AKRT14N/A
17247.46MMP3'protein_coding'110DEGain176.460N/AMMP3N/A
18257.44AC090625.5'protein_coding'314DEGain174.110N/AAC090625.5N/A
19287.17ERG'protein_coding'1020DEGain143.950N/AERGN/A
20297.16FEZ1'protein_coding'212DEGain143.070N/AFEZ1N/A
21317.01FGF1'protein_coding'1018DEGain129.010N/AFGF1N/A
22326.98AP000926.6'protein_coding'28DEGain125.950N/AAP000926.6N/A
23336.96ACTA2'protein_coding'19DEGain124.331EU ACTA20
24346.92TMTC1'protein_coding'323DEGain121.190N/ATMTC1N/A
25356.90CPNE8'protein_coding'221DEGain119.660N/ACPNE8N/A
26366.81PROS1'protein_coding'318DEGain112.160N/APROS1N/A
27376.76MARK3'protein_coding'321AEGain25.878EU ES E17a_E18a71.43
28386.74DST'protein_coding'9123AEGain578.4987EU ES AB IR CE E16a_E17a63.51
29416.66JAM3'protein_coding'19DEGain101.380N/AJAM3N/A
30426.64RNASE7'protein_coding'12DEGain99.730N/ARNASE7N/A
31446.53OXTR'protein_coding'14DEGain92.600N/AOXTRN/A
32466.46SLC27A6'protein_coding'212DEGain87.900N/ASLC27A6N/A
33476.45ITGA1'protein_coding'129DEGain87.530N/AITGA1N/A
34486.44NOTCH4'protein_coding'130DEGain86.770N/ANOTCH4N/A
35496.39TIMP3'protein_coding'28DEGain83.990N/ATIMP3N/A
36516.38POSTN'protein_coding'524DEGain83.210N/APOSTNN/A
37546.26PLD5'protein_coding'213DEGain76.720N/APLD5N/A
38556.26CNN1'protein_coding'17DEGain76.620N/ACNN1N/A
39566.21GPR176'protein_coding'13DEGain73.900N/AGPR176N/A
40576.19FST'protein_coding'28DEGain73.220N/AFSTN/A
41586.19PRRX1'protein_coding'25DEGain72.950N/APRRX1N/A
42596.18ODZ2'protein_coding'235DEGain72.280N/AODZ2N/A
43606.17PTPRT'protein_coding'739DEGain72.030N/APTPRTN/A
44626.12MYLK'protein_coding'744DEGain69.680N/AMYLKN/A
45656.03NRP2'protein_coding'626DEGain65.500N/ANRP2N/A
46666.02LMOD1'protein_coding'39DEGain65.030N/ALMOD1N/A
47685.99NEXN'protein_coding'515DEGain63.670N/ANEXNN/A
48695.99SCARF2'protein_coding'317DEGain63.660N/ASCARF2N/A
49715.94SOBP'protein_coding'312DEGain61.510N/ASOBPN/A
50725.92NCAPD3'protein_coding'135AEGain14.473EU AB E33_Aa0
51745.89KRT16'protein_coding'18AEGain9.693AB CE I7_AR20
52755.88FLRT2'protein_coding'12DEGain58.980N/AFLRT2N/A
53785.87ST8SIA2'protein_coding'26DEGain58.560N/AST8SIA2N/A
54805.87AC124276.5'pseudogene'12DEGain58.300N/AAC124276.5N/A
55815.84EGFL9'protein_coding'412DEGain57.420N/AEGFL9N/A
56825.84SPARC'protein_coding'110DEGain57.290N/ASPARCN/A
57845.76ARHGAP25'protein_coding'415DEGain54.190N/AARHGAP25N/A
58855.75AL353732.14'protein_coding'14DEGain53.820N/AAL353732.14N/A
59865.75RASIP1'protein_coding'112DEGain53.670N/ARASIP1N/A
60875.74CAV1'protein_coding'511DEGain53.401ES CAV10
61885.73MSRB3'protein_coding'27DEGain53.120N/AMSRB3N/A
62895.72DSG3'protein_coding'116DEGain52.580N/ADSG3N/A
63905.70SERPINF1'protein_coding'18DEGain51.910N/ASERPINF1N/A
64915.69CACNA1C'protein_coding'2764DEGain51.740N/ACACNA1CN/A
65925.69FHL1'protein_coding'714DEGain51.570N/AFHL1N/A
66935.69GPM6B'protein_coding'410AEGain87.085EU ES AB ENST00000356942100.00
67965.67TCEAL7'protein_coding'26DEGain50.870N/ATCEAL7N/A
68975.66ABCB1'protein_coding'232DEGain50.640N/AABCB1N/A
69985.65FBXO25'protein_coding'413AEGain8.2819AB IR CE E7_Da0
70995.65TFDP2'protein_coding'418AEGain6.482AB E5_Da0
711025.62TNS4'protein_coding'417DEGain49.340N/ATNS4N/A
721035.62C1orf187'protein_coding'17DEGain49.230N/AC1orf187N/A
731045.60SEMA5A'protein_coding'123DEGain48.380N/ASEMA5AN/A
741075.57KIRREL'protein_coding'520DEGain47.440N/AKIRRELN/A
751085.57ZP4'protein_coding'112DEGain47.410N/AZP4N/A
761095.57LEF1'protein_coding'212DEGain47.370N/ALEF1N/A
771105.55LRP4'protein_coding'239DEGain46.900N/ALRP4N/A
781115.53NRCAM'protein_coding'638DEGain46.340N/ANRCAMN/A
791135.49IRX4'protein_coding'15DEGain45.080N/AIRX4N/A
801145.48COL8A1'protein_coding'25DEGain44.530N/ACOL8A1N/A
811155.42AEBP1'protein_coding'121DEGain42.820N/AAEBP1N/A
821175.41ACAT2'protein_coding'19AEGain2.881AB E9_Aa0
831185.40LAMB1'protein_coding'440DEGain42.150N/ALAMB1N/A
841195.39GPC1'protein_coding'19DEGain41.950N/AGPC1N/A
851205.39ISM1'protein_coding'16DEGain41.920N/AISM1N/A
861215.38EMILIN1'protein_coding'18DEGain41.780N/AEMILIN1N/A
871225.37AKAP2'protein_coding'723AEGain224.3418EU ES CE E11a_E13a81.25
881265.34C16orf7'protein_coding'322AEGain11.4737EU AB IR CE I3_AR157.14
891275.34ANO1'protein_coding'428DEGain19.3211EU ES ANO180.00
901285.33FBXW7'protein_coding'416AEGain19.602EU CE E4a_E5a0
911295.33COL4A1'protein_coding'467DEGain40.310N/ACOL4A1N/A
921315.33MT1E'protein_coding'25DEGain40.210N/AMT1EN/A
931335.32MAGI3'protein_coding'426AEGain8.622EU AB ENST000003696150
941345.30TSC22D1'protein_coding'25AEGain2.762EU ES ER1a100.00
951355.30BMP5'protein_coding'17DEGain39.310N/ABMP5N/A
961385.29Z95331.2'snRNA_pseudogene'11DEGain38.990N/AZ95331.2N/A
971395.28MT1M'protein_coding'13DEGain38.900N/AMT1MN/A
981405.27UNC5C'protein_coding'218DEGain38.680N/AUNC5CN/A
991425.27TUBB2B'protein_coding'14DEGain38.520N/ATUBB2BN/A
1001445.25THY1'protein_coding'14DEGain38.100N/ATHY1N/A
1011455.25AGPAT1'protein_coding'614AEGain19.073EU ES AB ENST00000395499100.00
1021475.24ITGB3'protein_coding'115DEGain37.840N/AITGB3N/A
1031505.24ARHGEF11'protein_coding'345AEGain6.813EU E40a_E41a100.00
1041535.22NECAB1'protein_coding'114DEGain37.400N/ANECAB1N/A
1051545.21FHOD3'protein_coding'225DEGain37.020N/AFHOD3N/A
1061565.19NDN'protein_coding'11DEGain36.440N/ANDNN/A
1071575.18SASH1'protein_coding'324AEGain18.133AB CE I1_AR40
1081605.16CXCL14'protein_coding'14DEGain35.780N/ACXCL14N/A
1091615.15C4orf49'protein_coding'26DEGain35.580N/AC4orf49N/A
1101625.14SHB'protein_coding'316AEGain5.205IR CE I10_SR10
1111645.14MMP10'protein_coding'110DEGain35.220N/AMMP10N/A
1121655.13CALML3'protein_coding'11DEGain35.000N/ACALML3N/A
1131665.13DSC3'protein_coding'217DEGain34.930N/ADSC3N/A
1141685.12AXL'protein_coding'220DEGain34.840N/AAXLN/A
1151695.12CORO2B'protein_coding'214DEGain34.770N/ACORO2BN/A
1161705.12SORCS1'protein_coding'330DEGain34.660N/ASORCS1N/A
1171715.11CLIP3'protein_coding'114DEGain34.490N/ACLIP3N/A
1181755.09LIMS2'protein_coding'1232DEGain34.130N/ALIMS2N/A
1191765.09C6orf105'protein_coding'311DEGain34.100N/AC6orf105N/A
1201775.09ANGPTL2'protein_coding'26DEGain34.070N/AANGPTL2N/A
1211785.08TRIM5'protein_coding'822AEGain5.951AB E4_Aa0
1221795.08SCG5'protein_coding'16DEGain33.750N/ASCG5N/A
1231805.07COL8A2'protein_coding'38DEGain33.680N/ACOL8A2N/A
1241815.06RBMS3'protein_coding'418DEGain33.370N/ARBMS3N/A
1251835.04FGF2'protein_coding'24DEGain32.950N/AFGF2N/A
1261845.03GAS1'protein_coding'11DEGain32.720N/AGAS1N/A
1271855.03SDR'protein_coding'12DEGain32.710N/ASDRN/A
1281875.02TMEM178'protein_coding'26DEGain32.390N/ATMEM178N/A
1291904.99ODZ3'protein_coding'127DEGain31.890N/AODZ3N/A
1301924.97EHD3'protein_coding'16DEGain31.420N/AEHD3N/A
1311934.97LTBP2'protein_coding'136DEGain31.280N/ALTBP2N/A
1321944.96AC093307.5'protein_coding'12DEGain31.230N/AAC093307.5N/A
1331964.96C20orf59'protein_coding'215DEGain31.140N/AC20orf59N/A
1341974.96RP1-21O18.1'protein_coding'724AEGain11.0015EU AB E12a_E13a50.00
1351994.95KIF1A'protein_coding'353DEGain30.880N/AKIF1AN/A
1362014.94ABLIM1'protein_coding'1540AEGain9.853EU ES AB E11a_E13a100.00
1372024.94KCNMB1'protein_coding'14DEGain30.700N/AKCNMB1N/A
1382084.91ADAMTS5'protein_coding'18DEGain30.120N/AADAMTS5N/A
1392094.90RAB39'protein_coding'12DEGain29.800N/ARAB39N/A
1402114.89NUDT11'protein_coding'23DEGain29.570N/ANUDT11N/A
1412134.87INTS6'protein_coding'220AEGain7.5222AB IR CE I2_SR20
1422144.87DBC1'protein_coding'313DEGain29.160N/ADBC1N/A
1432154.86AFAP1L2'protein_coding'321DEGain29.090N/AAFAP1L2N/A
1442204.85AC007362.4'pseudogene'13DEGain28.940N/AAC007362.4N/A
1452214.85C13orf33'protein_coding'15DEGain28.790N/AC13orf33N/A
1462304.80MT2A'protein_coding'13DEGain27.830N/AMT2AN/A
1472334.79MAOB'protein_coding'217DEGain27.652EU MAOB0.00
1482364.77MT1X'protein_coding'35DEGain27.350N/AMT1XN/A
1492374.77TFPT'protein_coding'413AEGain17.057AB IR E3_Aa0
1502474.74SH2D5'protein_coding'19DEGain26.680N/ASH2D5N/A
1512484.72NGFR'protein_coding'16DEGain26.440N/ANGFRN/A
1522494.72AC074378.4'protein_coding'11DEGain26.420N/AAC074378.4N/A
1532534.71NUDT10'protein_coding'25DEGain26.200N/ANUDT10N/A
1542564.69APOE'protein_coding'14DEGain25.860N/AAPOEN/A
1552604.68SLC38A5'protein_coding'322DEGain25.580N/ASLC38A5N/A
1562614.68HAS3'protein_coding'37DEGain25.580N/AHAS3N/A
1572634.67VLDLR'protein_coding'730AEGain6.321AB E18_Da0
1582644.67GYPC'protein_coding'411DEGain13.322EU GYPC100.00
1592654.66TNC'protein_coding'528AEGain302.8414EU ES AB ENST0000034523066.67
1602664.66ACTN1'protein_coding'224AEGain29.772EU ES E18a_E20a0.00
1612684.66NAP1L2'protein_coding'11DEGain25.200N/ANAP1L2N/A
1622694.65SPTBN1'protein_coding'338AEGain5.982EU ES ER2a100.00
1632714.65TRPC6'protein_coding'313DEGain25.080N/ATRPC6N/A
1642734.64DOCK10'protein_coding'461DEGain24.980N/ADOCK10N/A
1652744.64RG9MTD3'protein_coding'311AEGain8.402AB E8_Aa0
1662764.64SLC30A4'protein_coding'18AEGain2.699EU AB E6a_E7a0
1672774.63PBRM1'protein_coding'940AEGain6.811ES E27a_E30a0
1682794.63PPP1R3C'protein_coding'12DEGain24.730N/APPP1R3CN/A
1692804.62MMP1'protein_coding'110DEGain24.670N/AMMP1N/A
1702814.62KIAA1217'protein_coding'930AEGain7.435EU ES CE E22a_E25a66.67
1712844.61MMP2'protein_coding'113DEGain24.380N/AMMP2N/A
1722874.59RSPO3'protein_coding'27DEGain24.100N/ARSPO3N/A
1732894.59KCNK3'protein_coding'12DEGain24.040N/AKCNK3N/A
1742964.56DSCAM'protein_coding'337DEGain23.630N/ADSCAMN/A
1753004.56SERPINB5'protein_coding'17DEGain23.530N/ASERPINB5N/A
1763044.54COL4A2'protein_coding'461DEGain23.312EU COL4A20.00
1773054.54NDE1'protein_coding'515AEGain21.331AB E12_Aa0
1783064.53DOK5'protein_coding'210AEGain6.624IR I1_SR20
1793074.53TSHZ3'protein_coding'24DEGain23.120N/ATSHZ3N/A
1803084.53NKD2'protein_coding'315DEGain23.100N/ANKD2N/A
1813124.52DZIP1L'protein_coding'116DEGain22.900N/ADZIP1LN/A
1823134.52SERPINE1'protein_coding'19DEGain22.880N/ASERPINE1N/A
1833154.51GRP'protein_coding'13DEGain22.740N/AGRPN/A
1843164.51VGLL3'protein_coding'25DEGain22.730N/AVGLL3N/A
1853174.50CDH13'protein_coding'114DEGain22.661EU CDH130
1863184.50BICC1'protein_coding'223DEGain22.650N/ABICC1N/A
1873194.50IL24'protein_coding'611DEGain22.610N/AIL24N/A
1883234.49THSD7B'protein_coding'230DEGain22.400N/ATHSD7BN/A
1893264.48ATP5S'protein_coding'39AEGain5.404AB CE E6_Aa0
1903274.47SERF2'protein_coding'1330AEGain5.1512EU AB E10_Da87.50
1913294.47KRT5'protein_coding'19DEGain22.100N/AKRT5N/A
1923334.45MRGPRX4'protein_coding'11DEGain21.930N/AMRGPRX4N/A
1933344.45ARHGAP20'protein_coding'217DEGain21.890N/AARHGAP20N/A
1943374.44CDH11'protein_coding'317DEGain21.700N/ACDH11N/A
1953384.44ADAMTS2'protein_coding'325DEGain21.700N/AADAMTS2N/A
1963394.43SAMD5'protein_coding'12DEGain21.610N/ASAMD5N/A
1973414.42AL603832.28'protein_coding'17AEGain5.861AB E5_Aa0
1983444.41IGFBP1'protein_coding'14DEGain21.240N/AIGFBP1N/A
1993474.40GRIA4'protein_coding'320DEGain21.160N/AGRIA4N/A
2003544.38FAM126A'protein_coding'316DEGain11.343EU ES FAM126A100.00
2013624.36ARHGAP19'protein_coding'617AEGain26.602EU E2a_E3a100.00
2023634.36GPNMB'protein_coding'314DEGain20.490N/AGPNMBN/A
2033664.34NEF3'protein_coding'13DEGain20.310N/ANEF3N/A
2043684.34ARHGEF3'protein_coding'213AEGain4.274EU ES E4a_E5a33.33
2053734.32RBM12B'protein_coding'26AEGain17.043AB E3_Aa0
2063744.32MRC2'protein_coding'130DEGain20.020N/AMRC2N/A
2073754.32STX19'protein_coding'12AEGain5.701AB E2_Aa0
2083774.32SETBP1'protein_coding'27DEGain19.960N/ASETBP1N/A
2093794.32SEMA6D'protein_coding'822DEGain19.910N/ASEMA6DN/A
2103804.31MYH11'protein_coding'443DEGain19.830N/AMYH11N/A
2113814.31MYSM1'protein_coding'120AEGain5.606ES AB CE E4a_E7a0
2123824.31LRFN5'protein_coding'27DEGain19.780N/ALRFN5N/A
2133884.29NTRK3'protein_coding'625DEGain19.520N/ANTRK3N/A
2143904.28PRDM2'protein_coding'922AEGain4.764EU ES E11a_E15a66.67
2153924.28SERPINF2'protein_coding'211DEGain19.370N/ASERPINF2N/A
2163954.27JPH2'protein_coding'27DEGain19.300N/AJPH2N/A
2173984.26SLC16A9'protein_coding'38DEGain19.190N/ASLC16A9N/A
2183994.26KRT17'protein_coding'210DEGain19.181AB KRT170
2194064.25SORBS1'protein_coding'1643AEGain23.7425EU ES AB E7a_E8a81.82
2204104.23PLA2G4B'protein_coding'639AEGain2.977EU ES AB E2_Aa40.00
2214114.23KIAA0226'protein_coding'323AEGain5.641EU E12a_E13a0
2224194.21MRVI1'protein_coding'119DEGain18.490N/AMRVI1N/A
2234214.19LHFP'protein_coding'14DEGain18.260N/ALHFPN/A
2244224.19EGFLAM'protein_coding'629DEGain18.250N/AEGFLAMN/A
2254234.18C10orf116'protein_coding'25AEGain3.011AB E3_Da0
2264244.18TGFB1I1'protein_coding'313DEGain18.090N/ATGFB1I1N/A
2274274.17MT1A'protein_coding'13DEGain18.040N/AMT1AN/A
2284304.16Y_RNA'misc_RNA'11DEGain17.890N/AY_RNAN/A
2294314.16COL14A1'protein_coding'349DEGain17.880N/ACOL14A1N/A
2304324.16ALPK1'protein_coding'221AEGain5.391AB E7_Da0
2314344.16IGFBP6'protein_coding'14DEGain17.840N/AIGFBP6N/A
2324424.14SNAI2'protein_coding'26DEGain17.630N/ASNAI2N/A
2334444.14CRELD1'protein_coding'416AEGain4.741AB E7_Aa0
2344454.14SVEP1'protein_coding'659DEGain17.590N/ASVEP1N/A
2354474.13CD70'protein_coding'13DEGain17.550N/ACD70N/A
2364484.13KIF5C'protein_coding'224DEGain17.540N/AKIF5CN/A
2374494.13GJA1'protein_coding'12DEGain17.520N/AGJA1N/A
2384514.13EPHA1'protein_coding'118AEGain5.781AB E17_Da0
2394524.13RFXANK'protein_coding'413AEGain5.981AB E10_Aa0
2404534.12CHST11'protein_coding'14DEGain17.440N/ACHST11N/A
2414554.12C8orf84'protein_coding'26DEGain17.430N/AC8orf84N/A
2424564.12AC006050.3'processed_pseudogene'17DEGain17.420N/AAC006050.3N/A
2434584.12SERPING1'protein_coding'617DEGain17.410N/ASERPING1N/A
2444604.11CAPN3'protein_coding'1039AEGain3.272ES AB E21_Da0
2454624.11RORA'protein_coding'315AEGain2.072EU AB E5_Aa0
2464684.10ZNF503'protein_coding'25DEGain17.120N/AZNF503N/A
2474694.10RBL1'protein_coding'223AEGain11.1120EU E3a_E4a68.42
2484704.09SMYD1'protein_coding'110DEGain17.090N/ASMYD1N/A
2494714.09NID1'protein_coding'220DEGain17.070N/ANID1N/A
2504724.09HAP1'protein_coding'415AEGain5.615EU E7a_E8a25.00
2514734.09IGFBP2'protein_coding'14DEGain17.030N/AIGFBP2N/A


Candidate Differential and Alternative Expression Genes (Loss ONLY)

The following table lists candidate genes ranked according to 'Score'. Only the top 250 genes appear in each list. For a complete list download the results file provided above. To appear in this list, a 'candidate gene' must be differentially expressed at the gene level (DE) or contain at least one alternatively expressed (AE) feature. The 'Score' is based on the fold change as well as other factors for AE events (multiple features supporting the same event, reciprocity, etc.). The 'Event Type' indicates whether the gene was differentially expressed ('DE') or alternatively expressed 'AE'. 'Direction' refers to the direction (+ve/-ve) of the fold change. 'Gain' (+ve) indicates higher expression in library A than library B and vice versa. 'FC' stands for fold change. '# AE Events' is the number of significant alternative expression events observed for each gene. 'AE Codes' refers to various alternative expression subtypes (listed above). The 'Top Feature' is the most significant AE event observed for an AE gene. 'Adjacency' refers to the number of consecutive AE features (potentially supporting the same isoform). 'Adjacency %' refers to the percent of all AE events for a gene that were adjacent to each other.


RankOverall
Rank
ScoreNameGene
Type
Trans.
Count
Exon
Count
Event
Type
DirectionFC# AE
Events
AE CodesTop FeatureAdjacency
%
139.84SERHL'protein_coding'111AELoss-84.583EU AB CE E5a_E6a0
2137.78PIK3R1'protein_coding'418AELoss-11.4115EU ES ENST0000033648392.86
3147.76LAMA3'protein_coding'377AELoss-3.1228EU AB E10a_E11a57.69
4167.70LMO7'protein_coding'635AELoss-14.947EU ES AB E6_Aa40.00
5187.67TPM1'protein_coding'921AELoss-21.534EU ES E4a_E5a33.33
6227.59INPP4B'protein_coding'225AELoss-47.7210EU ES AB CE E1a_E2a100.00
7237.51DMKN'protein_coding'828AELoss-14.1116EU ES AB IR CE ER2a77.78
8267.39AKR1C2'protein_coding'422AELoss-25.2114EU AB IR CE E2_Aa33.33
9277.21NT5C3'protein_coding'618AELoss-14.332EU E2a_E3a100.00
10307.09IFT172'protein_coding'250AELoss-44.719EU ES AB IR E44_Aa80.00
11396.69CLSTN1'protein_coding'319AELoss-11.157EU ES ENST0000037728883.33
12406.67EIF2B3'protein_coding'419AELoss-13.631AB E11_Da0
13436.61RP11-20F24.3'unprocessed_pseudogene'16DELoss-97.930N/ARP11-20F24.3N/A
14456.51ANKRD30A'protein_coding'343DELoss-91.330N/AANKRD30AN/A
15506.39MYBPC1'protein_coding'435DELoss-83.630N/AMYBPC1N/A
16526.35MUCL1'protein_coding'14DELoss-81.560N/AMUCL1N/A
17536.32BRF2'protein_coding'14AELoss-13.371AB E2_Aa0
18616.14SH3D19'protein_coding'325AELoss-8.933EU CE E1a_E2a100.00
19636.12TARSL2'protein_coding'221AELoss-15.003EU AB CE I15_AR30
20646.04RGS3'protein_coding'1037AELoss-7.3510EU ES CE E26a_E27a100.00
21676.01SF3B3'protein_coding'229AELoss-12.691CE I17_AR20
22705.97S100A7'protein_coding'25DELoss-62.560N/AS100A7N/A
23735.90MUC1'protein_coding'1222DELoss-26.436EU AB MUC175.00
24765.88CXCL13'protein_coding'15DELoss-58.750N/ACXCL13N/A
25775.88SPATA5L1'protein_coding'210AELoss-9.8517ES AB IR I8_SR50
26795.87SLK'protein_coding'219AELoss-11.264EU ES ENST00000369755100.00
27835.83TBC1D15'protein_coding'320AELoss-11.771EU E7a_E8a0
28945.68TCOF1'protein_coding'428AELoss-9.7021ES AB IR CE E28_Aa0
29955.67AL357148.22'miRNA'11DELoss-50.940N/AAL357148.22N/A
301005.65PSMG3'protein_coding'37AELoss-11.741AB E4_Aa0
311015.63CD55'protein_coding'925AELoss-9.681ES E9a_E14b0
321055.58AGR2'protein_coding'210DELoss-47.980N/AAGR2N/A
331065.57AL445305.11'pseudogene'12AELoss-12.281AB E2_Aa0
341125.51MLPH'protein_coding'421DELoss-45.520N/AMLPHN/A
351165.42SLC5A1'protein_coding'115DELoss-42.700N/ASLC5A1N/A
361235.37SCGB3A1'protein_coding'13DELoss-41.280N/ASCGB3A1N/A
371245.36AZGP1'protein_coding'14DELoss-41.060N/AAZGP1N/A
381255.35CEACAM6'protein_coding'16DELoss-40.920N/ACEACAM6N/A
391305.33LIMA1'protein_coding'212AELoss-5.657EU AB ER1a100.00
401325.32BBS12'protein_coding'12AELoss-7.671EU E1a_E2a0
411365.29KRT19'protein_coding'16DELoss-39.090N/AKRT19N/A
421375.29SLPI'protein_coding'14DELoss-39.050N/ASLPIN/A
431415.27FRMD4A'protein_coding'532AELoss-14.1031EU AB CE I2_AR1386.36
441435.25GRHL2'protein_coding'320AELoss-35.898AB IR CE E14_Aa0
451465.24SLC44A4'protein_coding'325DELoss-37.850N/ASLC44A4N/A
461485.24PALLD'protein_coding'426AELoss-6.9113EU ES E3a_E4a83.33
471495.24GNA11'protein_coding'17AELoss-8.352AB CE I4_AR30
481515.23TGM2'protein_coding'213DELoss-37.520N/ATGM2N/A
491525.23SMARCA2'protein_coding'1150AELoss-22.0415EU ES AB IR E31a_E32a85.71
501555.19LYST'protein_coding'258AELoss-7.222EU CE I28_AR10
511585.18TCN1'protein_coding'19DELoss-36.240N/ATCN1N/A
521595.16ELMO2'protein_coding'429AELoss-10.131AB E4_Da0
531635.14ALDH3B2'protein_coding'110DELoss-35.240N/AALDH3B2N/A
541675.12RGS1'protein_coding'25DELoss-34.890N/ARGS1N/A
551725.11AL731567.6'protein_coding'113AELoss-17.704EU AB ER10a0.00
561735.10DEXI'protein_coding'12AELoss-9.184AB CE I1_AR90
571745.09C17orf81'protein_coding'412AELoss-29.4622EU AB IR E4_Da0.00
581825.05CYP4Z2P'protein_coding'110DELoss-33.200N/ACYP4Z2PN/A
591865.02KRTAP21-1'protein_coding'11DELoss-32.550N/AKRTAP21-1N/A
601885.01SLC6A14'protein_coding'114DELoss-32.241EU SLC6A140
611895.01SERPINB7'protein_coding'210DELoss-32.170N/ASERPINB7N/A
621914.99CTNND1'protein_coding'725AELoss-23.444EU ES ENST000003613320.00
631954.96OLFM4'protein_coding'15DELoss-31.160N/AOLFM4N/A
641984.95AC093283.3'protein_coding'123AELoss-6.1113EU E4a_E5a91.67
652004.94SELENBP1'protein_coding'112DELoss-30.750N/ASELENBP1N/A
662034.93ALOX5'protein_coding'114DELoss-30.520N/AALOX5N/A
672044.93S100A8'protein_coding'25DELoss-30.490N/AS100A8N/A
682054.92GPR110'protein_coding'521DELoss-30.230N/AGPR110N/A
692064.92TMC5'protein_coding'323DELoss-30.170N/ATMC5N/A
702074.91GRINL1A'protein_coding'1127AELoss-5.7831EU AB CE ER2a95.65
712104.89RP11-20F24.6'processed_pseudogene'11DELoss-29.700N/ARP11-20F24.6N/A
722124.88VTCN1'protein_coding'512DELoss-29.540N/AVTCN1N/A
732164.86S100A9'protein_coding'13DELoss-29.000N/AS100A9N/A
742174.86MYO6'protein_coding'540AELoss-51.5315EU ES AB IR CE E29a_E30a87.50
752184.86DIAPH1'protein_coding'638AELoss-6.121ES E1a_E3a0
762194.86SERPINB3'protein_coding'210DELoss-28.970N/ASERPINB3N/A
772224.84ECHDC1'protein_coding'922AELoss-11.862EU ES ER2a100.00
782234.82ANK3'protein_coding'1061AELoss-52.8910EU ES AB CE E25a_E27a100.00
792244.82GPSM2'protein_coding'318AELoss-5.191AB E14_Aa0
802254.81C17orf80'protein_coding'26AELoss-15.3814EU AB IR CE I4_SR10
812264.81IDO1'protein_coding'110DELoss-28.100N/AIDO1N/A
822274.81FBP1'protein_coding'17DELoss-28.040N/AFBP1N/A
832284.81EEF1A2'protein_coding'29DELoss-28.020N/AEEF1A2N/A
842294.80IGFL1'protein_coding'14DELoss-27.860N/AIGFL1N/A
852314.80UCP2'protein_coding'18DELoss-27.800N/AUCP2N/A
862324.79TMPRSS2'protein_coding'215DELoss-27.720N/ATMPRSS2N/A
872344.78PIGR'protein_coding'111DELoss-27.490N/APIGRN/A
882354.78TNIP3'protein_coding'213DELoss-27.470N/ATNIP3N/A
892384.77RELL1'protein_coding'17AELoss-6.6414AB IR I6_SR90
902394.77CTNS'protein_coding'317AELoss-8.6120AB IR E3_Aa0
912404.77ISY1'protein_coding'316AELoss-7.351ES E4a_E9a0
922414.77ZNF688'protein_coding'515AELoss-16.758EU AB CE I9_SR300
932424.75THADA'protein_coding'1357AELoss-21.7916EU ES AB CE I26_AR461.54
942434.75PI3'protein_coding'13DELoss-26.970N/API3N/A
952444.74CYP1A1'protein_coding'412DELoss-26.791EU CYP1A10
962454.74TSPAN1'protein_coding'210DELoss-26.760N/ATSPAN1N/A
972464.74C9orf150'protein_coding'12DELoss-26.700N/AC9orf150N/A
982504.72C15orf48'protein_coding'26DELoss-26.370N/AC15orf48N/A
992514.71CXCL17'protein_coding'14DELoss-26.230N/ACXCL17N/A
1002524.71GABRP'protein_coding'213DELoss-26.210N/AGABRPN/A
1012544.71VNN3'protein_coding'513DELoss-26.123ES AB VNN30
1022554.69GJB2'protein_coding'23DELoss-25.880N/AGJB2N/A
1032574.68SCCPDH'protein_coding'212DELoss-25.720N/ASCCPDHN/A
1042584.68KYNU'protein_coding'523DELoss-25.660N/AKYNUN/A
1052594.68IL1RN'protein_coding'513DELoss-25.650N/AIL1RNN/A
1062624.68C10orf81'protein_coding'622DELoss-25.550N/AC10orf81N/A
1072674.66SBSN'protein_coding'15DELoss-25.320N/ASBSNN/A
1082704.65AL157387.9'scRNA_pseudogene'11DELoss-25.110N/AAL157387.9N/A
1092724.65KRT15'protein_coding'414DELoss-25.050N/AKRT15N/A
1102754.64B3GNT3'protein_coding'13DELoss-24.860N/AB3GNT3N/A
1112784.63CLDN3'protein_coding'11DELoss-24.740N/ACLDN3N/A
1122824.62KLK6'protein_coding'49DELoss-24.510N/AKLK6N/A
1132834.61S100P'protein_coding'12DELoss-24.440N/AS100PN/A
1142854.60ERBB3'protein_coding'229DELoss-24.320N/AERBB3N/A
1152864.59AC073995.6'protein_coding'15DELoss-24.101EU AC073995.60
1162884.59NCCRP1'protein_coding'16DELoss-24.100N/ANCCRP1N/A
1172904.59ELF1'protein_coding'312AELoss-16.512EU E1a_E2a100.00
1182914.58KIT'protein_coding'121DELoss-23.910N/AKITN/A
1192924.58TNFRSF11B'protein_coding'15DELoss-23.900N/ATNFRSF11BN/A
1202934.57AC005361.5'protein_coding'26DELoss-23.800N/AAC005361.5N/A
1212944.57RASAL1'protein_coding'122DELoss-23.710N/ARASAL1N/A
1222954.56C12orf39'protein_coding'27DELoss-23.640N/AC12orf39N/A
1232974.56C19orf21'protein_coding'15DELoss-23.590N/AC19orf21N/A
1242984.56AQP5'protein_coding'14DELoss-23.570N/AAQP5N/A
1252994.56DEFB1'protein_coding'12DELoss-23.551EU DEFB10
1263014.55AC025580.8'snoRNA_pseudogene'11DELoss-23.410N/AAC025580.8N/A
1273024.55CLDN8'protein_coding'23DELoss-23.360N/ACLDN8N/A
1283034.55TFCP2L1'protein_coding'115DELoss-23.360N/ATFCP2L1N/A
1293094.53FGFBP1'protein_coding'25DELoss-23.060N/AFGFBP1N/A
1303104.52BCL2A1'protein_coding'23DELoss-23.000N/ABCL2A1N/A
1313114.52AARSD1'protein_coding'423AELoss-5.0710EU AB E4a_E5a85.71
1323144.51LTF'protein_coding'117DELoss-22.800N/ALTFN/A
1333204.50CCL28'protein_coding'13DELoss-22.600N/ACCL28N/A
1343214.49FOXA1'protein_coding'12DELoss-22.490N/AFOXA1N/A
1353224.49PVRL4'protein_coding'19DELoss-22.400N/APVRL4N/A
1363244.48MALL'protein_coding'14DELoss-22.380N/AMALLN/A
1373254.48FOXQ1'protein_coding'11DELoss-22.340N/AFOXQ1N/A
1383284.47RAB27B'protein_coding'16DELoss-22.140N/ARAB27BN/A
1393304.46PODXL'protein_coding'213DELoss-22.070N/APODXLN/A
1403314.46SPTAN1'protein_coding'565AELoss-6.897ES AB IR E32_Aa0
1413324.46BUD13'protein_coding'213AELoss-6.253AB E6_Da0
1423354.45CLDN4'protein_coding'11DELoss-21.850N/ACLDN4N/A
1433364.44AGR3'protein_coding'210DELoss-21.710N/AAGR3N/A
1443404.43PPM1H'protein_coding'110DELoss-21.500N/APPM1HN/A
1453424.42GCNT2'protein_coding'614DELoss-21.340N/AGCNT2N/A
1463434.42BBX'protein_coding'528AELoss-5.561ES ENST000004021630
1473454.41ACTR3B'protein_coding'418AELoss-5.833EU AB E12_Aa0.00
1483464.40DPF2'protein_coding'111AELoss-5.812CE I10_AR20
1493484.40HPCAL1'protein_coding'27AELoss-13.5310AB CE E4_Aa0
1503494.40C8orf4'protein_coding'11DELoss-21.060N/AC8orf4N/A
1513504.39ELF5'protein_coding'28DELoss-21.010N/AELF5N/A
1523514.39DIO2'protein_coding'38DELoss-21.000N/ADIO2N/A
1533524.38KRT23'protein_coding'211DELoss-20.880N/AKRT23N/A
1543534.38SLC34A2'protein_coding'113DELoss-20.830N/ASLC34A2N/A
1553554.37HLA-DRA'protein_coding'28DELoss-20.740N/AHLA-DRAN/A
1563564.37MAP3K14'protein_coding'222AELoss-5.684EU AB CE E14_Aa0.00
1573574.37EHF'protein_coding'19DELoss-20.720N/AEHFN/A
1583584.37SERPINB4'protein_coding'28DELoss-20.720N/ASERPINB4N/A
1593594.37MUC5B'protein_coding'151DELoss-20.690N/AMUC5BN/A
1603604.37SPDEF'protein_coding'16DELoss-20.630N/ASPDEFN/A
1613614.37BATF'protein_coding'13DELoss-20.610N/ABATFN/A
1623644.35RHOF'protein_coding'15AELoss-12.922EU E3a_E4a100.00
1633654.35C6orf15'protein_coding'12DELoss-20.380N/AC6orf15N/A
1643674.34PKIB'protein_coding'716DELoss-20.260N/APKIBN/A
1653694.33FUT3'protein_coding'24DELoss-20.170N/AFUT3N/A
1663704.33SLC28A3'protein_coding'118DELoss-20.151CE SLC28A30
1673714.33FXR2'protein_coding'117AELoss-6.0515AB IR I120
1683724.32C20orf119'protein_coding'925AELoss-11.424EU AB E16_Da0
1693764.32UTP20'protein_coding'162AELoss-5.723EU AB CE I12_AR10
1703784.32FABP7'protein_coding'26DELoss-19.920N/AFABP7N/A
1713834.30LYZ'protein_coding'14AELoss-30.534EU E3a_E4a100.00
1723844.30ARHGDIB'protein_coding'16DELoss-19.740N/AARHGDIBN/A
1733854.30AC008734.7'protein_coding'248DELoss-19.720N/AAC008734.7N/A
1743864.30HLA-DPB1'protein_coding'818AELoss-7.154EU AB ER1b0
1753874.29TMEM45B'protein_coding'16DELoss-19.580N/ATMEM45BN/A
1763894.29TJP3'protein_coding'222DELoss-19.500N/ATJP3N/A
1773914.28BARX2'protein_coding'14DELoss-19.420N/ABARX2N/A
1783934.27MACC1'protein_coding'29DELoss-19.330N/AMACC1N/A
1793944.27RBM47'protein_coding'413DELoss-19.321ES RBM470
1803964.27ZNF587'protein_coding'13AELoss-16.595EU AB IR E1a_E2a0
1813974.26C15orf44'protein_coding'214AELoss-6.101AB E3_Aa0
1824004.26CD24L4'protein_coding'11DELoss-19.150N/ACD24L4N/A
1834014.25SORBS2'protein_coding'639DELoss-19.061AB SORBS20
1844024.25TFF3'protein_coding'37DELoss-19.050N/ATFF3N/A
1854034.25RASEF'protein_coding'218DELoss-19.040N/ARASEFN/A
1864044.25C10orf90'protein_coding'416DELoss-19.030N/AC10orf90N/A
1874054.25RNASE1'protein_coding'34DELoss-18.990N/ARNASE1N/A
1884074.25HLA-DMA'protein_coding'513DELoss-18.981AB HLA-DMA0
1894084.24MUC15'protein_coding'25DELoss-18.940N/AMUC15N/A
1904094.24LCN2'protein_coding'415DELoss-18.850N/ALCN2N/A
1914124.23SLC39A8'protein_coding'211DELoss-18.720N/ASLC39A8N/A
1924134.23AC105391.1'protein_coding'14DELoss-18.710N/AAC105391.1N/A
1934144.22DIAPH2'protein_coding'534AELoss-21.301ES ENST000003730540
1944154.22PGBD5'protein_coding'211DELoss-18.610N/APGBD5N/A
1954164.21INHBB'protein_coding'12DELoss-18.550N/AINHBBN/A
1964174.21FOXI1'protein_coding'12DELoss-18.510N/AFOXI1N/A
1974184.21RP11-189B4.2'processed_pseudogene'11DELoss-18.500N/ARP11-189B4.2N/A
1984204.20DEFB4'protein_coding'12DELoss-18.320N/ADEFB4N/A
1994254.17AC073995.6'protein_coding'151DELoss-18.056EU ES AC073995.60.00
2004264.17AP006285.2'pseudogene'12DELoss-18.040N/AAP006285.2N/A
2014284.16DAPP1'protein_coding'19DELoss-17.900N/ADAPP1N/A
2024294.16AC008013.8'protein_coding'112DELoss-17.903AB IR AC008013.80
2034334.16HPX'protein_coding'110DELoss-17.840N/AHPXN/A
2044354.15AC021188.6'protein_coding'16DELoss-17.810N/AAC021188.6N/A
2054364.15CA8'protein_coding'19DELoss-17.771AB CA80
2064374.15INTS12'protein_coding'312AELoss-10.518EU AB CE I4_AR20.00
2074384.15FAM148A'protein_coding'12DELoss-17.740N/AFAM148AN/A
2084394.15KMO'protein_coding'421DELoss-17.710N/AKMON/A
2094404.15LIPH'protein_coding'110DELoss-17.700N/ALIPHN/A
2104414.14CCDC64B'protein_coding'19DELoss-17.690N/ACCDC64BN/A
2114434.14NIN'protein_coding'943AELoss-19.2861EU ES AB IR CE E20_Da0.00
2124464.13RHOV'protein_coding'13DELoss-17.560N/ARHOVN/A
2134504.13SULT2B1'protein_coding'28DELoss-17.520N/ASULT2B1N/A
2144544.12HLA-DRB1'protein_coding'16DELoss-17.430N/AHLA-DRB1N/A
2154574.12BIK'protein_coding'15DELoss-17.410N/ABIKN/A
2164594.12GJC3'protein_coding'24DELoss-17.360N/AGJC3N/A
2174614.11ESM1'protein_coding'23DELoss-17.280N/AESM1N/A
2184634.11VNN1'protein_coding'17DELoss-17.240N/AVNN1N/A
2194644.11RP11-360O19.5'pseudogene'11DELoss-17.230N/ARP11-360O19.5N/A
2204654.10MIA3'protein_coding'844AELoss-4.153EU ER7c100.00
2214664.10FBXO5'protein_coding'27AELoss-5.071EU E2a_E3a0
2224674.10SLC11A2'protein_coding'319AELoss-11.052EU ES ENST00000394904100.00
2234754.09C15orf21'protein_coding'59DELoss-17.020N/AC15orf21N/A
2244764.09MAST2'protein_coding'336AELoss-12.2265EU AB IR I14_SR10
2254774.08LRP2'protein_coding'179DELoss-16.950N/ALRP2N/A
2264794.08SERHL2'protein_coding'518DELoss-16.910N/ASERHL2N/A
2274804.08KIAA1641'protein_coding'549DELoss-16.8913EU AB KIAA164145.45
2284854.07WDR46'protein_coding'115AELoss-4.701AB E4_Da0
2294864.06MARCO'protein_coding'220DELoss-16.730N/AMARCON/A
2304884.06PIK3R3'protein_coding'415DELoss-16.693EU ES AB PIK3R30.00
2314894.06AC091742.5'protein_coding'113DELoss-16.630N/AAC091742.5N/A
2324914.05HPR'protein_coding'620DELoss-16.590N/AHPRN/A
2334924.04NEBL'protein_coding'537DELoss-9.408EU AB CE NEBL75.00
2344944.04S100A1'protein_coding'36DELoss-16.410N/AS100A1N/A
2354954.04IL17C'protein_coding'13DELoss-16.410N/AIL17CN/A
2364964.03NCK1'protein_coding'14AELoss-13.281CE I2_AR20
2374974.03C4orf7'protein_coding'15DELoss-16.340N/AC4orf7N/A
2384984.03CGN'protein_coding'121DELoss-16.340N/ACGNN/A
2394994.02MS4A7'protein_coding'27DELoss-16.200N/AMS4A7N/A
2405004.01ALDH1A3'protein_coding'213DELoss-16.150N/AALDH1A3N/A
2415024.01NCALD'protein_coding'511DELoss-16.100N/ANCALDN/A
2425044.00TRERF1'protein_coding'521DELoss-16.050N/ATRERF1N/A
2435074.00ANPEP'protein_coding'121DELoss-15.980N/AANPEPN/A
2445103.99PROL1'protein_coding'13DELoss-15.880N/APROL1N/A
2455113.99P4HA1'protein_coding'421AELoss-4.913AB CE E10_Aa0
2465133.98MFI2'protein_coding'217DELoss-15.820N/AMFI2N/A
2475173.98SEC31A'protein_coding'640AELoss-6.0210EU ES AB E28a_E29a62.50
2485203.97PRLR'protein_coding'717DELoss-15.710N/APRLRN/A
2495213.97AC091742.5'protein_coding'120DELoss-15.681ES AC091742.50
2505223.97LEO1'protein_coding'214AELoss-6.589EU AB IR I9_SR1100.00
2515243.96C20orf95'protein_coding'313DELoss-15.520N/AC20orf95N/A