Summary page for comparison: 'Myo_Epi2_vs_Lum_Epi2' (A01030_vs_A01029) - Project: Breast


Download complete candidate list as tab delimited text file: Myo_Epi2_vs_Lum_Epi2.txt


Summary of Differential (DE) and Alternative Expression (AE) for all gene loci:

Total Candidate Genes: 6,226 (of 36,953 possible genes)

DE Genes: 3,460

AE Genes: 3,729

Alternative Exon Usage (EU) Genes: 1,754

Alernative Exon Skipping (ES) Genes: 1,606

Alternative Exon Boundary (AB) Genes: 1,115

Intron Retention (IR) Genes: 150

Cryptic Exon (CE) Genes: 307


Candidate Differential AND Alternative Expression Genes

The following table lists candidate genes ranked according to 'Score'. Only the top 250 genes appear in each list. For a complete list download the results file provided above. To appear in this list, a 'candidate gene' must be differentially expressed at the gene level (DE) or contain at least one alternatively expressed (AE) feature. The 'Score' is based on the fold change as well as other factors for AE events (multiple features supporting the same event, reciprocity, etc.). The 'Event Type' indicates whether the gene was differentially expressed ('DE') or alternatively expressed 'AE'. 'Direction' refers to the direction (+ve/-ve) of the fold change. 'Gain' (+ve) indicates higher expression in library A than library B and vice versa. 'FC' stands for fold change. '# AE Events' is the number of significant alternative expression events observed for each gene. 'AE Codes' refers to various alternative expression subtypes (listed above). The 'Top Feature' is the most significant AE event observed for an AE gene. 'Adjacency' refers to the number of consecutive AE features (potentially supporting the same isoform). 'Adjacency %' refers to the percent of all AE events for a gene that were adjacent to each other.


RankOverall
Rank
ScoreNameGene
Type
Trans.
Count
Exon
Count
Event
Type
DirectionFC# AE
Events
AE CodesTop FeatureAdjacency
%
1111.15SLC41A3'protein_coding'517AEGain125.601AB E9_Da0
2210.03COL17A1'protein_coding'358DEGain1046.640N/ACOL17A1N/A
339.99SVIL'protein_coding'342AEGain39.5915EU ES E4a_E5a78.57
449.93MAN2B2'protein_coding'119AEGain60.4010EU AB E15_Da37.50
559.80GPR107'protein_coding'324AEGain33.284EU ES AB ER16a50.00
669.61ACTG2'protein_coding'415DEGain782.270N/AACTG2N/A
779.53RNASE7'protein_coding'12DEGain737.820N/ARNASE7N/A
888.92ACTA2'protein_coding'19DEGain485.872EU ES ACTA20.00
998.92SPATA5L1'protein_coding'210AELoss-42.2116IR I8_SR50
10108.58CNN1'protein_coding'17DEGain383.050N/ACNN1N/A
11118.45SPTBN1'protein_coding'338AEGain26.525EU ES ER2a100.00
12128.39PPP1R12B'protein_coding'936AELoss-5.0611EU ES CE E6a_E8a0.00
13138.20IQCG'protein_coding'112AEGain3.571CE I2_AR40
14148.04COL1A1'protein_coding'151AEGain66.272EU E1a_E2a100.00
15158.03TPM1'protein_coding'921AELoss-35.218EU ES E4a_E5a42.86
16167.93AMIGO2'protein_coding'12DEGain244.080N/AAMIGO2N/A
17177.84DST'protein_coding'9123AELoss-2.90137EU ES AB IR CE I9_AR379.37
18187.81DBNL'protein_coding'216AEGain18.201AB E7_Da0
19197.73HAS3'protein_coding'37AELoss-2.132ES AB E6_Da0
20207.68CD200'protein_coding'410DEGain204.810N/ACD200N/A
21217.58C5orf25'protein_coding'416AEGain120.813EU AB E4_Aa0
22227.49GPR81'protein_coding'15AELoss-23.993CE I1_AR10
23237.29DKK3'protein_coding'311DEGain156.380N/ADKK3N/A
24247.25LAMA5'protein_coding'483AEGain27.522AB E54_Da0
25257.25AC090625.5'protein_coding'314DEGain151.780N/AAC090625.5N/A
26267.21CCND2'protein_coding'15DEGain147.740N/ACCND2N/A
27277.19LIPH'protein_coding'110DELoss-54.022ES LIPH100.00
28287.19MAP7D1'protein_coding'629AEGain20.332ES E5a_E10a100.00
29297.19TTC37'protein_coding'143AEGain14.422EU AB E31_Da0
30307.11IL1B'protein_coding'17DEGain138.570N/AIL1BN/A
31317.11CDH13'protein_coding'114DEGain137.910N/ACDH13N/A
32327.03PTPRT'protein_coding'739DEGain130.680N/APTPRTN/A
33337.01AL117190.6'protein_coding'18DEGain129.300N/AAL117190.6N/A
34346.98TFDP2'protein_coding'418AEGain12.063EU ES AB E5_Da0.00
35356.97JAM3'protein_coding'19DEGain125.090N/AJAM3N/A
36366.94FEZ1'protein_coding'212DEGain123.110N/AFEZ1N/A
37376.94MSRB3'protein_coding'27DEGain122.520N/AMSRB3N/A
38386.86RBMS3'protein_coding'418DEGain116.280N/ARBMS3N/A
39396.85ODZ2'protein_coding'235DEGain115.330N/AODZ2N/A
40406.77AL117190.6'protein_coding'16DEGain109.390N/AAL117190.6N/A
41416.75GPSM3'protein_coding'413AEGain53.954EU AB E1_Da0.00
42426.73PPP1CB'protein_coding'412AEGain14.961ES E5a_E8a0
43436.71MMP3'protein_coding'110DEGain104.600N/AMMP3N/A
44446.70CXCL14'protein_coding'14DEGain104.280N/ACXCL14N/A
45456.69ABCB1'protein_coding'232DEGain103.600N/AABCB1N/A
46466.65LCP1'protein_coding'221DEGain100.311EU LCP10
47476.64TCEAL7'protein_coding'26DEGain99.640N/ATCEAL7N/A
48486.63POSTN'protein_coding'524DEGain98.820N/APOSTNN/A
49496.61IGSF9'protein_coding'322AELoss-9.936EU AB CE E7_Aa100.00
50506.59LMOD1'protein_coding'39DEGain96.620N/ALMOD1N/A
51516.49INCENP'protein_coding'219AEGain14.601AB E4_Da0
52526.48GNA11'protein_coding'17AELoss-16.561CE I4_AR30
53536.46EMILIN1'protein_coding'18DEGain88.240N/AEMILIN1N/A
54546.44IGFBP2'protein_coding'14DEGain87.110N/AIGFBP2N/A
55556.42NTF3'protein_coding'11DEGain85.850N/ANTF3N/A
56566.42TNRC6B'protein_coding'432AEGain45.472AB E22_Da0
57576.42KCNMB1'protein_coding'14DEGain35.092EU ES KCNMB1100.00
58586.39TNC'protein_coding'528DEGain34.6315EU ES TNC85.71
59596.35FHOD3'protein_coding'225DEGain81.410N/AFHOD3N/A
60606.33NEXN'protein_coding'515DEGain80.580N/ANEXNN/A
61616.30AP000926.6'protein_coding'28DEGain78.980N/AAP000926.6N/A
62626.26CFLAR'protein_coding'816AEGain7.232ES AB ENST000003415820
63636.26FST'protein_coding'28DEGain76.820N/AFSTN/A
64646.24ZNF294'protein_coding'333AEGain46.361AB E16_Da0
65656.22OTUD7B'protein_coding'112AELoss-11.742AB E4_Da0
66666.21MMP2'protein_coding'113DEGain74.070N/AMMP2N/A
67676.21AKAP2'protein_coding'723DEGain31.3017EU ES AKAP268.75
68686.19MYLK'protein_coding'744DEGain73.060N/AMYLKN/A
69696.18PDPN'protein_coding'411DEGain72.630N/APDPNN/A
70706.18GPNMB'protein_coding'314DEGain72.460N/AGPNMBN/A
71716.17PDCL3'protein_coding'28AEGain16.931CE I6_AR10
72726.17CLIP3'protein_coding'114DEGain71.870N/ACLIP3N/A
73736.14FLNB'protein_coding'447AEGain11.232EU ES E38a_E39a0.00
74746.13AL117190.6'protein_coding'14DEGain70.160N/AAL117190.6N/A
75756.13PI3'protein_coding'13DELoss-69.920N/API3N/A
76766.10NOTCH4'protein_coding'130DEGain68.780N/ANOTCH4N/A
77776.10FRMD4A'protein_coding'532AEGain5.6724EU AB CE E15_Aa100.00
78786.09MLL'protein_coding'646AELoss-11.081ES E1a_E7a0
79796.09BRE'protein_coding'721AEGain9.886EU AB CE I1_AR1100.00
80806.06DDR2'protein_coding'219AELoss-6.441AB E5_Aa0
81816.03FAM134B'protein_coding'210AEGain36.483EU AB E6_Aa0
82825.99BAZ1B'protein_coding'221AEGain48.001AB E11_Da0
83835.98TP63'protein_coding'717DEGain63.290N/ATP63N/A
84845.98MARK3'protein_coding'321AEGain9.467EU ES E16a_E17a100.00
85855.97NRG1'protein_coding'1021DEGain62.800N/ANRG1N/A
86865.97SLPI'protein_coding'14DELoss-62.630N/ASLPIN/A
87875.96SAMD5'protein_coding'12DEGain62.420N/ASAMD5N/A
88885.96SARM1'protein_coding'213AELoss-10.948EU AB E4_Da75.00
89895.94AAMP'protein_coding'111AEGain14.991ES E8a_E10a0
90905.86FBLIM1'protein_coding'515AELoss-14.655EU ES E1a_E2a75.00
91915.84SH2D5'protein_coding'19DEGain57.400N/ASH2D5N/A
92925.84SLC11A2'protein_coding'319AELoss-18.392EU ES ENST00000394904100.00
93935.84ARHGEF11'protein_coding'345AEGain8.126EU ES CE E40a_E41a100.00
94945.83LTF'protein_coding'117DELoss-56.960N/ALTFN/A
95955.83BOC'protein_coding'221DEGain56.910N/ABOCN/A
96965.83XXyac-R12DG2.2'protein_coding'417AEGain3.828EU ES AB IR CE E4a_E8a0.00
97975.81BCL2A1'protein_coding'23DELoss-55.972EU BCL2A10.00
98985.80RBM26'protein_coding'224AEGain27.303EU E13a_E14a100.00
99995.80PVRL4'protein_coding'19DELoss-55.630N/APVRL4N/A
1001005.79ARHGAP25'protein_coding'415DEGain55.240N/AARHGAP25N/A
1011015.78TCEAL5'protein_coding'13DEGain55.130N/ATCEAL5N/A
1021025.78GRP'protein_coding'13DEGain55.080N/AGRPN/A
1031035.78SLC27A6'protein_coding'212DEGain54.910N/ASLC27A6N/A
1041045.77GPR176'protein_coding'13DEGain54.600N/AGPR176N/A
1051055.74KRT23'protein_coding'211DELoss-53.611ES KRT230
1061065.73CD82'protein_coding'210AEGain11.372ES E3a_E5a0.00
1071075.71ADAMTS5'protein_coding'18DEGain52.380N/AADAMTS5N/A
1081085.70AEBP1'protein_coding'121DEGain52.075EU ES AB AEBP10.00
1091095.70SLC2A3'protein_coding'212DEGain51.820N/ASLC2A3N/A
1101105.68NEK9'protein_coding'122AELoss-12.092EU AB E18_Da0
1111115.68CTNND1'protein_coding'725AEGain9.316EU ES E11a_E12a40.00
1121125.67RP1-21O18.1'protein_coding'724AELoss-14.2315EU AB IR E17_Aa71.43
1131135.64KIRREL'protein_coding'520DEGain49.790N/AKIRRELN/A
1141145.64FRG1'protein_coding'19AELoss-25.611AB E1_Da0
1151155.64KIAA1217'protein_coding'930AEGain11.478ES AB E21a_E25a0.00
1161165.63SLC5A1'protein_coding'115DELoss-49.652EU SLC5A1100.00
1171175.63NRP2'protein_coding'626DEGain49.590N/ANRP2N/A
1181185.62SLC28A3'protein_coding'118DELoss-49.116EU ES SLC28A30.00
1191195.61CLSTN1'protein_coding'319AEGain26.115EU ES ER11a75.00
1201205.61C20orf59'protein_coding'215DEGain48.700N/AC20orf59N/A
1211215.59KRT19'protein_coding'16DELoss-48.090N/AKRT19N/A
1221225.58SEC16A'protein_coding'842AEGain11.455EU ES AB E23f_E25a33.33
1231235.56MYH11'protein_coding'443DEGain47.330N/AMYH11N/A
1241245.56PRPF40B'protein_coding'431AEGain27.6025AB IR E23_Da0
1251255.56DDX47'protein_coding'212AELoss-22.322ES E3a_E5a0.00
1261265.55AZGP1'protein_coding'14DELoss-46.901EU AZGP10
1271275.55GJA1'protein_coding'12DEGain46.780N/AGJA1N/A
1281285.54PI4KB'protein_coding'621AEGain9.921ES E8a_E10a0
1291295.53KYNU'protein_coding'523DELoss-46.280N/AKYNUN/A
1301305.52C14orf94'protein_coding'614AEGain7.394EU ES E6a_E8a33.33
1311315.51CLDN3'protein_coding'11DELoss-45.700N/ACLDN3N/A
1321325.50KIAA1967'protein_coding'222AEGain10.533EU AB E2a_E3a0
1331335.50CCL28'protein_coding'13DELoss-45.160N/ACCL28N/A
1341345.49SLC34A2'protein_coding'113DELoss-45.000N/ASLC34A2N/A
1351355.49ZSWIM7'protein_coding'27AEGain8.613EU AB E3_Aa100.00
1361365.48DKK1'protein_coding'14DEGain44.730N/ADKK1N/A
1371375.48NPAS2'protein_coding'121AEGain7.902ES E16a_E20a0.00
1381385.47SPP1'protein_coding'49DEGain44.400N/ASPP1N/A
1391395.47BICC1'protein_coding'223DEGain44.340N/ABICC1N/A
1401405.46TSC22D1'protein_coding'25AEGain4.282ES E1a_E3a0.00
1411415.46SCGB2A2'protein_coding'13DELoss-43.980N/ASCGB2A2N/A
1421425.45GABRP'protein_coding'213DELoss-43.864EU ES GABRP33.33
1431435.45OXTR'protein_coding'14DEGain20.582EU OXTR100.00
1441445.45CYP26A1'protein_coding'39DEGain43.660N/ACYP26A1N/A
1451455.44TNFRSF11B'protein_coding'15DELoss-43.460N/ATNFRSF11BN/A
1461465.44NFASC'protein_coding'1548DEGain43.4329EU ES AB NFASC44.00
1471475.43KRT15'protein_coding'414DELoss-43.232ES AB KRT150
1481485.43MACC1'protein_coding'29DELoss-43.100N/AMACC1N/A
1491495.42TRMT61B'protein_coding'17AELoss-7.552EU ES E1a_E6a0.00
1501505.42PER2'protein_coding'325AEGain8.374ES E19a_E23a0.00
1511515.41TIMP3'protein_coding'28DEGain42.650N/ATIMP3N/A
1521525.41TRIOBP'protein_coding'733AEGain8.091ES E21a_E24a0
1531535.40MGP'protein_coding'14DELoss-42.230N/AMGPN/A
1541545.39SLMAP'protein_coding'430AELoss-6.7721EU ES AB IR E3a_E11a81.25
1551555.39C4orf49'protein_coding'26DEGain41.840N/AC4orf49N/A
1561565.38RP4-695O20__B.10'protein_coding'39AEGain8.012EU ES E4a_E7a0.00
1571575.37MICALCL'protein_coding'19DEGain41.220N/AMICALCLN/A
1581585.36S100A9'protein_coding'13DELoss-41.060N/AS100A9N/A
1591595.36ZCCHC7'protein_coding'312AEGain10.752ES E1a_E5a0.00
1601605.36EHF'protein_coding'19DELoss-41.002ES EHF100.00
1611615.36BEX1'protein_coding'13DEGain40.990N/ABEX1N/A
1621625.36CLDN4'protein_coding'11DELoss-40.950N/ACLDN4N/A
1631635.35PSG4'protein_coding'28DEGain40.810N/APSG4N/A
1641645.34TIMP1'protein_coding'411AEGain9.802EU ES E5a_E6a0.00
1651655.34CA8'protein_coding'19DELoss-40.430N/ACA8N/A
1661665.33THY1'protein_coding'14DEGain40.220N/ATHY1N/A
1671675.33TLCD1'protein_coding'26AEGain6.031AB E3_Da0
1681685.32ISM1'protein_coding'16DEGain40.040N/AISM1N/A
1691695.32AC099524.5'protein_coding'223AEGain34.357ES E14a_E16a16.67
1701705.32PSG5'protein_coding'718DEGain39.960N/APSG5N/A
1711715.32RNF145'protein_coding'111AEGain8.681ES E3a_E6a0
1721725.31SCG5'protein_coding'16DEGain39.730N/ASCG5N/A
1731735.31DAPP1'protein_coding'19DELoss-39.690N/ADAPP1N/A
1741745.31SF1'protein_coding'520AELoss-10.380N/AENST00000334944N/A
1751755.29LIMS2'protein_coding'1232DEGain39.130N/ALIMS2N/A
1761765.29VGLL1'protein_coding'15DELoss-39.000N/AVGLL1N/A
1771775.28FGFBP1'protein_coding'25DELoss-38.900N/AFGFBP1N/A
1781785.28DNAJC17'protein_coding'111AELoss-29.505AB IR I10_AR10
1791795.27C6orf89'protein_coding'415AEGain8.292EU AB E3_Aa0
1801805.27LCN2'protein_coding'415DELoss-38.570N/ALCN2N/A
1811815.27CPNE8'protein_coding'221DEGain38.540N/ACPNE8N/A
1821825.26GRINL1A'protein_coding'1127AELoss-22.0536EU ES AB CE E2a_E3a92.59
1831835.25PIGR'protein_coding'111DELoss-38.183EU ES PIGR50.00
1841845.25OLA1'protein_coding'415AELoss-8.352ES E9a_E11a0.00
1851855.24RPS6KB2'protein_coding'115AEGain10.782ES E13a_E15a0.00
1861865.24RP11-20F24.3'unprocessed_pseudogene'16DELoss-37.780N/ARP11-20F24.3N/A
1871875.24SLC26A11'protein_coding'118AEGain8.631ES E6a_E8a0
1881885.24SLC12A7'protein_coding'225AEGain9.511ES E11a_E13a0
1891895.22TFF1'protein_coding'13DELoss-37.360N/ATFF1N/A
1901905.22PSG1'protein_coding'512DEGain37.190N/APSG1N/A
1911915.21GULP1'protein_coding'930AELoss-6.138EU ES AB IR E2_Ac50.00
1921925.21VNN1'protein_coding'17DELoss-36.930N/AVNN1N/A
1931935.20UTP20'protein_coding'162AELoss-9.5617AB IR I100
1941945.19KCNK17'protein_coding'27DEGain36.600N/AKCNK17N/A
1951955.19BID'protein_coding'813AEGain2.873AB CE I2_AR50
1961965.19ERG'protein_coding'1020DEGain36.420N/AERGN/A
1971975.18DEFB1'protein_coding'12DELoss-36.260N/ADEFB1N/A
1981985.18RNF213'protein_coding'143AEGain5.814EU AB E40_Aa0.00
1991995.18B3GNT3'protein_coding'13DELoss-36.170N/AB3GNT3N/A
2002005.17FBRS'protein_coding'423AEGain10.263ES E6a_E13a50.00
2012015.17AC008734.7'protein_coding'248DELoss-35.960N/AAC008734.7N/A
2022025.17WNT5B'protein_coding'27DEGain35.920N/AWNT5BN/A
2032035.15ATG9A'protein_coding'523AEGain10.523EU ES E1a_E5a50.00
2042045.14VTCN1'protein_coding'512DELoss-35.260N/AVTCN1N/A
2052055.14CLDN8'protein_coding'23DELoss-35.190N/ACLDN8N/A
2062065.13IGFBP6'protein_coding'14DEGain34.990N/AIGFBP6N/A
2072075.13GSTA1'protein_coding'17DELoss-34.990N/AGSTA1N/A
2082085.12AFAP1L2'protein_coding'321DEGain34.723EU ES AFAP1L20.00
2092095.11INTS6'protein_coding'220AEGain8.724ES AB CE E1b_E3a0.00
2102105.11S100A8'protein_coding'25DELoss-34.570N/AS100A8N/A
2112115.11PDLIM1'protein_coding'17AEGain7.771ES E3a_E5a0
2122125.11SULT2B1'protein_coding'28DELoss-34.450N/ASULT2B1N/A
2132135.10AC073995.6'protein_coding'151DELoss-34.290N/AAC073995.6N/A
2142145.09TPM2'protein_coding'518DEGain34.153EU ES AB TPM20.00
2152155.09SCD5'protein_coding'37AELoss-7.562EU AB E4_Da0
2162165.07MICAL2'protein_coding'329DEGain33.5710EU ES AB MICAL20.00
2172175.07RPGR'protein_coding'622AEGain5.901AB E4_Aa0
2182185.07DNMT1'protein_coding'241AELoss-3.432EU AB E5_Aa0
2192195.06TMEM178'protein_coding'26DEGain33.440N/ATMEM178N/A
2202205.06TMPRSS2'protein_coding'215DELoss-33.280N/ATMPRSS2N/A
2212215.05C15orf48'protein_coding'26DELoss-33.061AB C15orf480
2222225.04DLGAP4'protein_coding'620AEGain8.751EU E11a_E12a0
2232235.04SEMA5A'protein_coding'123DEGain32.920N/ASEMA5AN/A
2242245.04SCARF2'protein_coding'317DEGain32.890N/ASCARF2N/A
2252255.04CTBP2'protein_coding'314AELoss-9.392ES E8a_E10a0.00
2262265.04SGSH'protein_coding'18AEGain6.571ES E2a_E5a0
2272275.03NOL9'protein_coding'112AELoss-7.001AB E7_Da0
2282285.03TUBB2B'protein_coding'14DEGain32.700N/ATUBB2BN/A
2292295.03ITGA1'protein_coding'129DEGain32.680N/AITGA1N/A
2302305.02CAPN12'protein_coding'121AELoss-8.6814EU AB E15a_E16a0.00
2312315.01C9orf150'protein_coding'12DELoss-32.330N/AC9orf150N/A
2322325.01SLC6A14'protein_coding'114DELoss-32.310N/ASLC6A14N/A
2332335.01IL20'protein_coding'38AEGain8.902IR I30
2342345.01PAQR3'protein_coding'418AELoss-5.523ES AB E5a_E7a100.00
2352355.00SCPEP1'protein_coding'215AEGain18.182ES E9a_E11a0.00
2362365.00NCAPD3'protein_coding'135AEGain9.9816EU AB IR E32_Da0.00
2372374.99BACE2'protein_coding'39AELoss-7.402ES E1a_E3a0.00
2382384.99NCK1'protein_coding'14AELoss-18.471CE I2_AR20
2392394.99GNA15'protein_coding'17DELoss-31.720N/AGNA15N/A
2402404.99COX4I1'protein_coding'15AELoss-26.681ES E1a_E3a0
2412414.98ARMC4'protein_coding'221DEGain31.670N/AARMC4N/A
2422424.98AXL'protein_coding'220DEGain31.640N/AAXLN/A
2432434.98MALL'protein_coding'14DELoss-31.460N/AMALLN/A
2442444.97SERPINB7'protein_coding'210DELoss-31.370N/ASERPINB7N/A
2452454.97CASP14'protein_coding'16DELoss-31.250N/ACASP14N/A
2462464.96MASP2'protein_coding'415AEGain7.427EU AB IR E6a_E7a0.00
2472474.96SH3YL1'protein_coding'727AEGain7.502ES AB E3a_E5a0
2482484.95VGLL3'protein_coding'25DEGain30.970N/AVGLL3N/A
2492494.95ZNF750'protein_coding'13DELoss-30.960N/AZNF750N/A
2502504.94KLC2'protein_coding'524AEGain9.571ES E11a_E13a0
2512514.94KRT14'protein_coding'18DEGain30.710N/AKRT14N/A


Candidate Alternative Expression Genes

The following table lists candidate genes ranked according to 'Score'. Only the top 250 genes appear in each list. For a complete list download the results file provided above. To appear in this list, a 'candidate gene' must be differentially expressed at the gene level (DE) or contain at least one alternatively expressed (AE) feature. The 'Score' is based on the fold change as well as other factors for AE events (multiple features supporting the same event, reciprocity, etc.). The 'Event Type' indicates whether the gene was differentially expressed ('DE') or alternatively expressed 'AE'. 'Direction' refers to the direction (+ve/-ve) of the fold change. 'Gain' (+ve) indicates higher expression in library A than library B and vice versa. 'FC' stands for fold change. '# AE Events' is the number of significant alternative expression events observed for each gene. 'AE Codes' refers to various alternative expression subtypes (listed above). The 'Top Feature' is the most significant AE event observed for an AE gene. 'Adjacency' refers to the number of consecutive AE features (potentially supporting the same isoform). 'Adjacency %' refers to the percent of all AE events for a gene that were adjacent to each other.


RankOverall
Rank
ScoreNameGene
Type
Trans.
Count
Exon
Count
Event
Type
DirectionFC# AE
Events
AE CodesTop FeatureAdjacency
%
1111.15SLC41A3'protein_coding'517AEGain125.601AB E9_Da0
239.99SVIL'protein_coding'342AEGain39.5915EU ES E4a_E5a78.57
349.93MAN2B2'protein_coding'119AEGain60.4010EU AB E15_Da37.50
459.80GPR107'protein_coding'324AEGain33.284EU ES AB ER16a50.00
588.92ACTA2'protein_coding'19DEGain485.872EU ES ACTA20.00
698.92SPATA5L1'protein_coding'210AELoss-42.2116IR I8_SR50
7118.45SPTBN1'protein_coding'338AEGain26.525EU ES ER2a100.00
8128.39PPP1R12B'protein_coding'936AELoss-5.0611EU ES CE E6a_E8a0.00
9138.20IQCG'protein_coding'112AEGain3.571CE I2_AR40
10148.04COL1A1'protein_coding'151AEGain66.272EU E1a_E2a100.00
11158.03TPM1'protein_coding'921AELoss-35.218EU ES E4a_E5a42.86
12177.84DST'protein_coding'9123AELoss-2.90137EU ES AB IR CE I9_AR379.37
13187.81DBNL'protein_coding'216AEGain18.201AB E7_Da0
14197.73HAS3'protein_coding'37AELoss-2.132ES AB E6_Da0
15217.58C5orf25'protein_coding'416AEGain120.813EU AB E4_Aa0
16227.49GPR81'protein_coding'15AELoss-23.993CE I1_AR10
17247.25LAMA5'protein_coding'483AEGain27.522AB E54_Da0
18277.19LIPH'protein_coding'110DELoss-54.022ES LIPH100.00
19287.19MAP7D1'protein_coding'629AEGain20.332ES E5a_E10a100.00
20297.19TTC37'protein_coding'143AEGain14.422EU AB E31_Da0
21346.98TFDP2'protein_coding'418AEGain12.063EU ES AB E5_Da0.00
22416.75GPSM3'protein_coding'413AEGain53.954EU AB E1_Da0.00
23426.73PPP1CB'protein_coding'412AEGain14.961ES E5a_E8a0
24466.65LCP1'protein_coding'221DEGain100.311EU LCP10
25496.61IGSF9'protein_coding'322AELoss-9.936EU AB CE E7_Aa100.00
26516.49INCENP'protein_coding'219AEGain14.601AB E4_Da0
27526.48GNA11'protein_coding'17AELoss-16.561CE I4_AR30
28566.42TNRC6B'protein_coding'432AEGain45.472AB E22_Da0
29576.42KCNMB1'protein_coding'14DEGain35.092EU ES KCNMB1100.00
30586.39TNC'protein_coding'528DEGain34.6315EU ES TNC85.71
31626.26CFLAR'protein_coding'816AEGain7.232ES AB ENST000003415820
32646.24ZNF294'protein_coding'333AEGain46.361AB E16_Da0
33656.22OTUD7B'protein_coding'112AELoss-11.742AB E4_Da0
34676.21AKAP2'protein_coding'723DEGain31.3017EU ES AKAP268.75
35716.17PDCL3'protein_coding'28AEGain16.931CE I6_AR10
36736.14FLNB'protein_coding'447AEGain11.232EU ES E38a_E39a0.00
37776.10FRMD4A'protein_coding'532AEGain5.6724EU AB CE E15_Aa100.00
38786.09MLL'protein_coding'646AELoss-11.081ES E1a_E7a0
39796.09BRE'protein_coding'721AEGain9.886EU AB CE I1_AR1100.00
40806.06DDR2'protein_coding'219AELoss-6.441AB E5_Aa0
41816.03FAM134B'protein_coding'210AEGain36.483EU AB E6_Aa0
42825.99BAZ1B'protein_coding'221AEGain48.001AB E11_Da0
43845.98MARK3'protein_coding'321AEGain9.467EU ES E16a_E17a100.00
44885.96SARM1'protein_coding'213AELoss-10.948EU AB E4_Da75.00
45895.94AAMP'protein_coding'111AEGain14.991ES E8a_E10a0
46905.86FBLIM1'protein_coding'515AELoss-14.655EU ES E1a_E2a75.00
47925.84SLC11A2'protein_coding'319AELoss-18.392EU ES ENST00000394904100.00
48935.84ARHGEF11'protein_coding'345AEGain8.126EU ES CE E40a_E41a100.00
49965.83XXyac-R12DG2.2'protein_coding'417AEGain3.828EU ES AB IR CE E4a_E8a0.00
50975.81BCL2A1'protein_coding'23DELoss-55.972EU BCL2A10.00
51985.80RBM26'protein_coding'224AEGain27.303EU E13a_E14a100.00
521055.74KRT23'protein_coding'211DELoss-53.611ES KRT230
531065.73CD82'protein_coding'210AEGain11.372ES E3a_E5a0.00
541085.70AEBP1'protein_coding'121DEGain52.075EU ES AB AEBP10.00
551105.68NEK9'protein_coding'122AELoss-12.092EU AB E18_Da0
561115.68CTNND1'protein_coding'725AEGain9.316EU ES E11a_E12a40.00
571125.67RP1-21O18.1'protein_coding'724AELoss-14.2315EU AB IR E17_Aa71.43
581145.64FRG1'protein_coding'19AELoss-25.611AB E1_Da0
591155.64KIAA1217'protein_coding'930AEGain11.478ES AB E21a_E25a0.00
601165.63SLC5A1'protein_coding'115DELoss-49.652EU SLC5A1100.00
611185.62SLC28A3'protein_coding'118DELoss-49.116EU ES SLC28A30.00
621195.61CLSTN1'protein_coding'319AEGain26.115EU ES ER11a75.00
631225.58SEC16A'protein_coding'842AEGain11.455EU ES AB E23f_E25a33.33
641245.56PRPF40B'protein_coding'431AEGain27.6025AB IR E23_Da0
651255.56DDX47'protein_coding'212AELoss-22.322ES E3a_E5a0.00
661265.55AZGP1'protein_coding'14DELoss-46.901EU AZGP10
671285.54PI4KB'protein_coding'621AEGain9.921ES E8a_E10a0
681305.52C14orf94'protein_coding'614AEGain7.394EU ES E6a_E8a33.33
691325.50KIAA1967'protein_coding'222AEGain10.533EU AB E2a_E3a0
701355.49ZSWIM7'protein_coding'27AEGain8.613EU AB E3_Aa100.00
711375.48NPAS2'protein_coding'121AEGain7.902ES E16a_E20a0.00
721405.46TSC22D1'protein_coding'25AEGain4.282ES E1a_E3a0.00
731425.45GABRP'protein_coding'213DELoss-43.864EU ES GABRP33.33
741435.45OXTR'protein_coding'14DEGain20.582EU OXTR100.00
751465.44NFASC'protein_coding'1548DEGain43.4329EU ES AB NFASC44.00
761475.43KRT15'protein_coding'414DELoss-43.232ES AB KRT150
771495.42TRMT61B'protein_coding'17AELoss-7.552EU ES E1a_E6a0.00
781505.42PER2'protein_coding'325AEGain8.374ES E19a_E23a0.00
791525.41TRIOBP'protein_coding'733AEGain8.091ES E21a_E24a0
801545.39SLMAP'protein_coding'430AELoss-6.7721EU ES AB IR E3a_E11a81.25
811565.38RP4-695O20__B.10'protein_coding'39AEGain8.012EU ES E4a_E7a0.00
821595.36ZCCHC7'protein_coding'312AEGain10.752ES E1a_E5a0.00
831605.36EHF'protein_coding'19DELoss-41.002ES EHF100.00
841645.34TIMP1'protein_coding'411AEGain9.802EU ES E5a_E6a0.00
851675.33TLCD1'protein_coding'26AEGain6.031AB E3_Da0
861695.32AC099524.5'protein_coding'223AEGain34.357ES E14a_E16a16.67
871715.32RNF145'protein_coding'111AEGain8.681ES E3a_E6a0
881785.28DNAJC17'protein_coding'111AELoss-29.505AB IR I10_AR10
891795.27C6orf89'protein_coding'415AEGain8.292EU AB E3_Aa0
901825.26GRINL1A'protein_coding'1127AELoss-22.0536EU ES AB CE E2a_E3a92.59
911835.25PIGR'protein_coding'111DELoss-38.183EU ES PIGR50.00
921845.25OLA1'protein_coding'415AELoss-8.352ES E9a_E11a0.00
931855.24RPS6KB2'protein_coding'115AEGain10.782ES E13a_E15a0.00
941875.24SLC26A11'protein_coding'118AEGain8.631ES E6a_E8a0
951885.24SLC12A7'protein_coding'225AEGain9.511ES E11a_E13a0
961915.21GULP1'protein_coding'930AELoss-6.138EU ES AB IR E2_Ac50.00
971935.20UTP20'protein_coding'162AELoss-9.5617AB IR I100
981955.19BID'protein_coding'813AEGain2.873AB CE I2_AR50
991985.18RNF213'protein_coding'143AEGain5.814EU AB E40_Aa0.00
1002005.17FBRS'protein_coding'423AEGain10.263ES E6a_E13a50.00
1012035.15ATG9A'protein_coding'523AEGain10.523EU ES E1a_E5a50.00
1022085.12AFAP1L2'protein_coding'321DEGain34.723EU ES AFAP1L20.00
1032095.11INTS6'protein_coding'220AEGain8.724ES AB CE E1b_E3a0.00
1042115.11PDLIM1'protein_coding'17AEGain7.771ES E3a_E5a0
1052145.09TPM2'protein_coding'518DEGain34.153EU ES AB TPM20.00
1062155.09SCD5'protein_coding'37AELoss-7.562EU AB E4_Da0
1072165.07MICAL2'protein_coding'329DEGain33.5710EU ES AB MICAL20.00
1082175.07RPGR'protein_coding'622AEGain5.901AB E4_Aa0
1092185.07DNMT1'protein_coding'241AELoss-3.432EU AB E5_Aa0
1102215.05C15orf48'protein_coding'26DELoss-33.061AB C15orf480
1112225.04DLGAP4'protein_coding'620AEGain8.751EU E11a_E12a0
1122255.04CTBP2'protein_coding'314AELoss-9.392ES E8a_E10a0.00
1132265.04SGSH'protein_coding'18AEGain6.571ES E2a_E5a0
1142275.03NOL9'protein_coding'112AELoss-7.001AB E7_Da0
1152305.02CAPN12'protein_coding'121AELoss-8.6814EU AB E15a_E16a0.00
1162335.01IL20'protein_coding'38AEGain8.902IR I30
1172345.01PAQR3'protein_coding'418AELoss-5.523ES AB E5a_E7a100.00
1182355.00SCPEP1'protein_coding'215AEGain18.182ES E9a_E11a0.00
1192365.00NCAPD3'protein_coding'135AEGain9.9816EU AB IR E32_Da0.00
1202374.99BACE2'protein_coding'39AELoss-7.402ES E1a_E3a0.00
1212384.99NCK1'protein_coding'14AELoss-18.471CE I2_AR20
1222404.99COX4I1'protein_coding'15AELoss-26.681ES E1a_E3a0
1232464.96MASP2'protein_coding'415AEGain7.427EU AB IR E6a_E7a0.00
1242474.96SH3YL1'protein_coding'727AEGain7.502ES AB E3a_E5a0
1252504.94KLC2'protein_coding'524AEGain9.571ES E11a_E13a0
1262524.94MTHFD2L'protein_coding'413AELoss-6.9716EU AB IR E1_Da0
1272534.93PLEKHA1'protein_coding'521AEGain7.146EU ES AB E14a_E15a75.00
1282554.93S100A3'protein_coding'25AELoss-6.422EU ES ER1a100.00
1292574.93KRT80'protein_coding'312DELoss-30.421ES KRT800
1302594.92ARHGEF10'protein_coding'638AELoss-8.553ES CE E17a_E20a0.00
1312604.92LRCH3'protein_coding'119AELoss-7.9526EU ES AB IR CE I13_AR1100.00
1322644.90RAP1B'protein_coding'210AEGain17.373EU ES E3a_E5a0.00
1332654.90NPC1'protein_coding'125AEGain8.993ES E9a_E11a0.00
1342674.89MYNN'protein_coding'411AELoss-6.341ES E1a_E4a0
1352684.89NTAN1'protein_coding'110AEGain5.501AB E7_Aa0
1362694.88KRIT1'protein_coding'523AELoss-6.611AB E1_Dd0
1372704.88HMOX2'protein_coding'312AEGain3.452EU AB E1_Ab0
1382724.88PHYH'protein_coding'415AELoss-8.601EU ER4a0
1392734.88KIAA0317'protein_coding'120AELoss-7.823AB IR E7_Da0
1402784.86ZNF44'protein_coding'419AEGain6.984EU AB E9_Da0
1412804.85EIF3EIP'protein_coding'316AELoss-8.361ES E2a_E7a0
1422814.85AP001120.5'protein_coding'19AEGain9.782EU E8a_E9a100.00
1432824.85GAA'protein_coding'222AEGain6.423EU AB E9_Aa0.00
1442834.84ZNF551'protein_coding'37AEGain6.751AB E4_Aa0
1452844.84KCNMA1'protein_coding'1351DEGain28.6017EU ES AB CE KCNMA150.00
1462854.83BAZ1A'protein_coding'329AEGain16.352ES E1a_E3a0.00
1472864.83CNNM3'protein_coding'28AEGain6.471AB E5_Da0
1482874.83RNF121'protein_coding'410AELoss-6.741AB E6_Da0
1492884.82CUL7'protein_coding'126AEGain23.702ES AB E6_Aa0
1502924.81PDLIM2'protein_coding'922AEGain5.655EU ES E2a_E4a50.00
1512954.80HERC2'protein_coding'193AEGain17.033EU AB E41_Da0
1522994.79MEF2D'protein_coding'516AEGain7.543EU ES E4a_E7a50.00
1533024.79MBP'protein_coding'1329AEGain4.757EU ES AB CE E11a_E14a75.00
1543034.79RARG'protein_coding'313AEGain7.933EU ES E3a_E6a50.00
1553044.78OBSL1'protein_coding'628AEGain7.7415EU AB IR CE I21_SR133.33
1563054.78WDR54'protein_coding'313AELoss-6.843EU AB E2a_E3a0.00
1573074.78TNS4'protein_coding'417DEGain27.445EU ES AB TNS433.33
1583084.77CHMP2A'protein_coding'27AEGain6.411EU E1b_E2a0
1593094.77NDE1'protein_coding'515AEGain25.691AB E12_Aa0
1603114.76TOP3A'protein_coding'119AELoss-6.4611ES AB IR CE E8_Aa0
1613124.76OSBPL9'protein_coding'835AEGain7.521ES E19a_E23a0
1623134.76PTPRK'protein_coding'1152AELoss-10.7610EU AB IR CE ENST00000368202100.00
1633144.76LHFP'protein_coding'14DEGain27.131EU LHFP0
1643154.76EGFR'protein_coding'431AELoss-2.063EU ES AB E1_Da0.00
1653164.76TRAF1'protein_coding'18AELoss-7.332AB CE E3_Da0
1663174.76S100A1'protein_coding'36DELoss-27.081AB S100A10
1673184.76FAM13A1'protein_coding'325AEGain6.7122EU AB CE ER6a68.75
1683194.75SACM1L'protein_coding'120AEGain19.972EU AB E17_Da0
1693204.75MIA3'protein_coding'844AELoss-2.583EU ER7c100.00
1703214.75CYP4F11'protein_coding'315DEGain26.865EU ES AB CYP4F1150.00
1713244.74DDX10'protein_coding'118AELoss-4.471CE I17_AR10
1723254.74GLTSCR2'protein_coding'220AEGain4.591ES E8c_E10a0
1733264.73SMARCA4'protein_coding'236AEGain7.621ES E32a_E34a0
1743274.73FCHO2'protein_coding'226AEGain6.391ES E17a_E19a0
1753324.72VEGFB'protein_coding'17AELoss-8.791ES E3a_E6a0
1763344.71INPPL1'protein_coding'231AEGain8.752ES AB E21a_E23a0
1773354.71CNOT6'protein_coding'318AELoss-6.081AB E8_Aa0
1783374.71SFI1'protein_coding'438AEGain6.545EU AB E15_Aa33.33
1793384.71ADAMTS1'protein_coding'212DEGain26.141ES ADAMTS10
1803394.70RBMS2'protein_coding'114AEGain6.542ES E7a_E9a0.00
1813404.70EFEMP1'protein_coding'416DEGain25.942EU ES EFEMP10.00
1823414.69ADAMTSL4'protein_coding'529AEGain8.638EU AB IR CE E16b_E17a0.00
1833434.69HMGXB3'protein_coding'120AEGain14.311ES E8a_E10a0
1843444.69MAP4'protein_coding'935AELoss-7.305ES E5a_E12a0.00
1853464.68GABBR1'protein_coding'1034AEGain31.484EU ES AB E18a_E21a50.00
1863484.67PCCB'protein_coding'115AEGain6.391AB E11_Da0
1873494.67AC021188.6'protein_coding'16DELoss-25.482EU ES AC021188.60.00
1883504.67C4orf7'protein_coding'15DELoss-25.422EU C4orf70.00
1893524.67LMO7'protein_coding'635AEGain14.395EU ES E3a_E4a75.00
1903534.66ACTR8'protein_coding'214AELoss-7.902ES E5a_E7a0.00
1913544.66ECHDC2'protein_coding'314AEGain6.304EU ES E4a_E11a33.33
1923564.65C9orf155'protein_coding'518AELoss-45.6021EU ES AB E4a_E5b76.47
1933574.64RIOK3'protein_coding'113AEGain7.911ES E2a_E4a0
1943584.64WDR59'protein_coding'226AELoss-7.232ES E2a_E4a0.00
1953594.63CA12'protein_coding'211AELoss-79.553EU E8a_E9a100.00
1963614.63DIAPH1'protein_coding'638AELoss-6.733ES E1a_E3a0.00
1973634.63ZFYVE1'protein_coding'214AEGain6.131AB E9_Da0
1983644.63DAGLB'protein_coding'115AEGain10.842ES E3a_E9a100.00
1993654.63ZNF12'protein_coding'615AELoss-13.643EU AB E7_Aa0
2003674.61ACY1'protein_coding'217AEGain6.611AB E4_Aa0
2013684.61ISGF3G'protein_coding'223AEGain6.622ES AB E16a_E18a0
2023704.60CD44'protein_coding'621AELoss-4.3615EU ES AB E6a_E13a69.23
2033734.59KCTD7'protein_coding'14AELoss-7.401CE I3_AR20
2043744.58DNAJB5'protein_coding'39AELoss-5.855AB IR I2_AR10
2053754.58PBEF1'protein_coding'417AEGain6.703ES E8a_E11a50.00
2063764.58RBM12'protein_coding'1333AEGain15.865EU ES AB E16a_E18a0.00
2073774.58C14orf103'protein_coding'242AELoss-5.921AB E18_Aa0
2083784.57THSD1'protein_coding'36DEGain12.642EU THSD1100.00
2093804.57RNF31'protein_coding'325AEGain7.841AB E3_Da0
2103814.57NXN'protein_coding'311AELoss-6.281AB E1_Da0
2113824.57CDC27'protein_coding'119AELoss-6.051ES E2a_E6a0
2123834.56CTSH'protein_coding'214AELoss-6.781AB E11_Da0
2133854.56PRKCG'protein_coding'118AEGain8.232AB CE E3_Aa0
2143894.56FBXW7'protein_coding'416AEGain19.821EU E4a_E5a0
2153924.55EPB41'protein_coding'1230AELoss-6.925EU ES CE ENST0000039886366.67
2163934.54RRAD'protein_coding'15AEGain7.563ES AB E2a_E5a0
2173944.54SLC25A26'protein_coding'28AEGain6.131ES E4a_E6a0
2183954.54USP28'protein_coding'225AELoss-7.244EU E8a_E9a33.33
2193964.54RBBP9'protein_coding'28AELoss-6.581EU E1a_E2a0
2203984.53NES'protein_coding'314DEGain23.172EU AB NES0
2213994.53GPHN'protein_coding'223AELoss-5.611ES E4a_E6a0
2224004.53ATXN2'protein_coding'530AELoss-7.351ES E8a_E10a0
2234014.53NT5C3'protein_coding'618AELoss-12.176EU AB E2a_E3a100.00
2244024.53RUSC1'protein_coding'718AEGain6.441AB E3_Aa0
2254054.52LAMA1'protein_coding'267DEGain12.2831EU AB LAMA186.21
2264064.52STK11'protein_coding'213AEGain7.251ES E6a_E8a0
2274074.52FBXO32'protein_coding'19AEGain5.784ES AB E6a_E8a0.00
2284094.52CHRNA10'protein_coding'15AEGain6.142ES E3a_E5a0
2294104.51HP1BP3'protein_coding'625AEGain25.446EU ES E2b_E3a40.00
2304114.51ZBTB44'protein_coding'313AELoss-6.331AB E3_Aa0
2314124.51ZNF148'protein_coding'211AELoss-7.891AB E7_Da0
2324144.50CLEC16A'protein_coding'432AELoss-6.611ES E17a_E19a0
2334164.50XDH'protein_coding'136AELoss-56.6929EU AB IR CE E1a_E2a90.00
2344174.50TMCO6'protein_coding'316AEGain7.422AB E10_Da0
2354194.50POLM'protein_coding'314AEGain6.661ES E6a_E9a0
2364214.49KLK5'protein_coding'28DELoss-12.052EU ES KLK5100.00
2374224.48ARPC5L'protein_coding'28AEGain6.431AB E3_Aa0
2384254.47CASZ1'protein_coding'323AELoss-28.596EU ES ER3a80.00
2394264.47EYA3'protein_coding'322AELoss-6.662EU AB E19_Aa0
2404274.47SLC2A9'protein_coding'214AELoss-2.734EU ES AB E1_Da50.00
2414284.47CENPL'protein_coding'411AELoss-6.472EU AB E5a_E6a0
2424304.47NR4A1'protein_coding'615AEGain18.295EU ES AB E5d_E7a33.33
2434314.47HCFC1'protein_coding'332AEGain6.392ES E22a_E24a0.00
2444344.46ZBTB48'protein_coding'213AEGain6.3910EU ES AB IR CE E4a_E6a100.00
2454374.45MPV17'protein_coding'923AEGain6.433ES AB CE E2a_E7a0
2464384.45LARGE'protein_coding'420AELoss-5.323CE I3_AR260
2474394.45RFX3'protein_coding'825AELoss-5.983EU ES CE E6a_E9a0.00
2484414.44IQSEC1'protein_coding'114AELoss-6.151ES E10a_E12a0
2494454.43CARD15'protein_coding'112AEGain2.195EU AB E11_Da0.00
2504464.42WDR90'protein_coding'350AEGain5.522EU ES E39a_E41a0.00
2514474.42FAM128B'protein_coding'26AEGain5.081AB E3_Da0


Candidate Differential and Alternative Expression Genes (Gain ONLY)

The following table lists candidate genes ranked according to 'Score'. Only the top 250 genes appear in each list. For a complete list download the results file provided above. To appear in this list, a 'candidate gene' must be differentially expressed at the gene level (DE) or contain at least one alternatively expressed (AE) feature. The 'Score' is based on the fold change as well as other factors for AE events (multiple features supporting the same event, reciprocity, etc.). The 'Event Type' indicates whether the gene was differentially expressed ('DE') or alternatively expressed 'AE'. 'Direction' refers to the direction (+ve/-ve) of the fold change. 'Gain' (+ve) indicates higher expression in library A than library B and vice versa. 'FC' stands for fold change. '# AE Events' is the number of significant alternative expression events observed for each gene. 'AE Codes' refers to various alternative expression subtypes (listed above). The 'Top Feature' is the most significant AE event observed for an AE gene. 'Adjacency' refers to the number of consecutive AE features (potentially supporting the same isoform). 'Adjacency %' refers to the percent of all AE events for a gene that were adjacent to each other.


RankOverall
Rank
ScoreNameGene
Type
Trans.
Count
Exon
Count
Event
Type
DirectionFC# AE
Events
AE CodesTop FeatureAdjacency
%
1111.15SLC41A3'protein_coding'517AEGain125.601AB E9_Da0
2210.03COL17A1'protein_coding'358DEGain1046.640N/ACOL17A1N/A
339.99SVIL'protein_coding'342AEGain39.5915EU ES E4a_E5a78.57
449.93MAN2B2'protein_coding'119AEGain60.4010EU AB E15_Da37.50
559.80GPR107'protein_coding'324AEGain33.284EU ES AB ER16a50.00
669.61ACTG2'protein_coding'415DEGain782.270N/AACTG2N/A
779.53RNASE7'protein_coding'12DEGain737.820N/ARNASE7N/A
888.92ACTA2'protein_coding'19DEGain485.872EU ES ACTA20.00
9108.58CNN1'protein_coding'17DEGain383.050N/ACNN1N/A
10118.45SPTBN1'protein_coding'338AEGain26.525EU ES ER2a100.00
11138.20IQCG'protein_coding'112AEGain3.571CE I2_AR40
12148.04COL1A1'protein_coding'151AEGain66.272EU E1a_E2a100.00
13167.93AMIGO2'protein_coding'12DEGain244.080N/AAMIGO2N/A
14187.81DBNL'protein_coding'216AEGain18.201AB E7_Da0
15207.68CD200'protein_coding'410DEGain204.810N/ACD200N/A
16217.58C5orf25'protein_coding'416AEGain120.813EU AB E4_Aa0
17237.29DKK3'protein_coding'311DEGain156.380N/ADKK3N/A
18247.25LAMA5'protein_coding'483AEGain27.522AB E54_Da0
19257.25AC090625.5'protein_coding'314DEGain151.780N/AAC090625.5N/A
20267.21CCND2'protein_coding'15DEGain147.740N/ACCND2N/A
21287.19MAP7D1'protein_coding'629AEGain20.332ES E5a_E10a100.00
22297.19TTC37'protein_coding'143AEGain14.422EU AB E31_Da0
23307.11IL1B'protein_coding'17DEGain138.570N/AIL1BN/A
24317.11CDH13'protein_coding'114DEGain137.910N/ACDH13N/A
25327.03PTPRT'protein_coding'739DEGain130.680N/APTPRTN/A
26337.01AL117190.6'protein_coding'18DEGain129.300N/AAL117190.6N/A
27346.98TFDP2'protein_coding'418AEGain12.063EU ES AB E5_Da0.00
28356.97JAM3'protein_coding'19DEGain125.090N/AJAM3N/A
29366.94FEZ1'protein_coding'212DEGain123.110N/AFEZ1N/A
30376.94MSRB3'protein_coding'27DEGain122.520N/AMSRB3N/A
31386.86RBMS3'protein_coding'418DEGain116.280N/ARBMS3N/A
32396.85ODZ2'protein_coding'235DEGain115.330N/AODZ2N/A
33406.77AL117190.6'protein_coding'16DEGain109.390N/AAL117190.6N/A
34416.75GPSM3'protein_coding'413AEGain53.954EU AB E1_Da0.00
35426.73PPP1CB'protein_coding'412AEGain14.961ES E5a_E8a0
36436.71MMP3'protein_coding'110DEGain104.600N/AMMP3N/A
37446.70CXCL14'protein_coding'14DEGain104.280N/ACXCL14N/A
38456.69ABCB1'protein_coding'232DEGain103.600N/AABCB1N/A
39466.65LCP1'protein_coding'221DEGain100.311EU LCP10
40476.64TCEAL7'protein_coding'26DEGain99.640N/ATCEAL7N/A
41486.63POSTN'protein_coding'524DEGain98.820N/APOSTNN/A
42506.59LMOD1'protein_coding'39DEGain96.620N/ALMOD1N/A
43516.49INCENP'protein_coding'219AEGain14.601AB E4_Da0
44536.46EMILIN1'protein_coding'18DEGain88.240N/AEMILIN1N/A
45546.44IGFBP2'protein_coding'14DEGain87.110N/AIGFBP2N/A
46556.42NTF3'protein_coding'11DEGain85.850N/ANTF3N/A
47566.42TNRC6B'protein_coding'432AEGain45.472AB E22_Da0
48576.42KCNMB1'protein_coding'14DEGain35.092EU ES KCNMB1100.00
49586.39TNC'protein_coding'528DEGain34.6315EU ES TNC85.71
50596.35FHOD3'protein_coding'225DEGain81.410N/AFHOD3N/A
51606.33NEXN'protein_coding'515DEGain80.580N/ANEXNN/A
52616.30AP000926.6'protein_coding'28DEGain78.980N/AAP000926.6N/A
53626.26CFLAR'protein_coding'816AEGain7.232ES AB ENST000003415820
54636.26FST'protein_coding'28DEGain76.820N/AFSTN/A
55646.24ZNF294'protein_coding'333AEGain46.361AB E16_Da0
56666.21MMP2'protein_coding'113DEGain74.070N/AMMP2N/A
57676.21AKAP2'protein_coding'723DEGain31.3017EU ES AKAP268.75
58686.19MYLK'protein_coding'744DEGain73.060N/AMYLKN/A
59696.18PDPN'protein_coding'411DEGain72.630N/APDPNN/A
60706.18GPNMB'protein_coding'314DEGain72.460N/AGPNMBN/A
61716.17PDCL3'protein_coding'28AEGain16.931CE I6_AR10
62726.17CLIP3'protein_coding'114DEGain71.870N/ACLIP3N/A
63736.14FLNB'protein_coding'447AEGain11.232EU ES E38a_E39a0.00
64746.13AL117190.6'protein_coding'14DEGain70.160N/AAL117190.6N/A
65766.10NOTCH4'protein_coding'130DEGain68.780N/ANOTCH4N/A
66776.10FRMD4A'protein_coding'532AEGain5.6724EU AB CE E15_Aa100.00
67796.09BRE'protein_coding'721AEGain9.886EU AB CE I1_AR1100.00
68816.03FAM134B'protein_coding'210AEGain36.483EU AB E6_Aa0
69825.99BAZ1B'protein_coding'221AEGain48.001AB E11_Da0
70835.98TP63'protein_coding'717DEGain63.290N/ATP63N/A
71845.98MARK3'protein_coding'321AEGain9.467EU ES E16a_E17a100.00
72855.97NRG1'protein_coding'1021DEGain62.800N/ANRG1N/A
73875.96SAMD5'protein_coding'12DEGain62.420N/ASAMD5N/A
74895.94AAMP'protein_coding'111AEGain14.991ES E8a_E10a0
75915.84SH2D5'protein_coding'19DEGain57.400N/ASH2D5N/A
76935.84ARHGEF11'protein_coding'345AEGain8.126EU ES CE E40a_E41a100.00
77955.83BOC'protein_coding'221DEGain56.910N/ABOCN/A
78965.83XXyac-R12DG2.2'protein_coding'417AEGain3.828EU ES AB IR CE E4a_E8a0.00
79985.80RBM26'protein_coding'224AEGain27.303EU E13a_E14a100.00
801005.79ARHGAP25'protein_coding'415DEGain55.240N/AARHGAP25N/A
811015.78TCEAL5'protein_coding'13DEGain55.130N/ATCEAL5N/A
821025.78GRP'protein_coding'13DEGain55.080N/AGRPN/A
831035.78SLC27A6'protein_coding'212DEGain54.910N/ASLC27A6N/A
841045.77GPR176'protein_coding'13DEGain54.600N/AGPR176N/A
851065.73CD82'protein_coding'210AEGain11.372ES E3a_E5a0.00
861075.71ADAMTS5'protein_coding'18DEGain52.380N/AADAMTS5N/A
871085.70AEBP1'protein_coding'121DEGain52.075EU ES AB AEBP10.00
881095.70SLC2A3'protein_coding'212DEGain51.820N/ASLC2A3N/A
891115.68CTNND1'protein_coding'725AEGain9.316EU ES E11a_E12a40.00
901135.64KIRREL'protein_coding'520DEGain49.790N/AKIRRELN/A
911155.64KIAA1217'protein_coding'930AEGain11.478ES AB E21a_E25a0.00
921175.63NRP2'protein_coding'626DEGain49.590N/ANRP2N/A
931195.61CLSTN1'protein_coding'319AEGain26.115EU ES ER11a75.00
941205.61C20orf59'protein_coding'215DEGain48.700N/AC20orf59N/A
951225.58SEC16A'protein_coding'842AEGain11.455EU ES AB E23f_E25a33.33
961235.56MYH11'protein_coding'443DEGain47.330N/AMYH11N/A
971245.56PRPF40B'protein_coding'431AEGain27.6025AB IR E23_Da0
981275.55GJA1'protein_coding'12DEGain46.780N/AGJA1N/A
991285.54PI4KB'protein_coding'621AEGain9.921ES E8a_E10a0
1001305.52C14orf94'protein_coding'614AEGain7.394EU ES E6a_E8a33.33
1011325.50KIAA1967'protein_coding'222AEGain10.533EU AB E2a_E3a0
1021355.49ZSWIM7'protein_coding'27AEGain8.613EU AB E3_Aa100.00
1031365.48DKK1'protein_coding'14DEGain44.730N/ADKK1N/A
1041375.48NPAS2'protein_coding'121AEGain7.902ES E16a_E20a0.00
1051385.47SPP1'protein_coding'49DEGain44.400N/ASPP1N/A
1061395.47BICC1'protein_coding'223DEGain44.340N/ABICC1N/A
1071405.46TSC22D1'protein_coding'25AEGain4.282ES E1a_E3a0.00
1081435.45OXTR'protein_coding'14DEGain20.582EU OXTR100.00
1091445.45CYP26A1'protein_coding'39DEGain43.660N/ACYP26A1N/A
1101465.44NFASC'protein_coding'1548DEGain43.4329EU ES AB NFASC44.00
1111505.42PER2'protein_coding'325AEGain8.374ES E19a_E23a0.00
1121515.41TIMP3'protein_coding'28DEGain42.650N/ATIMP3N/A
1131525.41TRIOBP'protein_coding'733AEGain8.091ES E21a_E24a0
1141555.39C4orf49'protein_coding'26DEGain41.840N/AC4orf49N/A
1151565.38RP4-695O20__B.10'protein_coding'39AEGain8.012EU ES E4a_E7a0.00
1161575.37MICALCL'protein_coding'19DEGain41.220N/AMICALCLN/A
1171595.36ZCCHC7'protein_coding'312AEGain10.752ES E1a_E5a0.00
1181615.36BEX1'protein_coding'13DEGain40.990N/ABEX1N/A
1191635.35PSG4'protein_coding'28DEGain40.810N/APSG4N/A
1201645.34TIMP1'protein_coding'411AEGain9.802EU ES E5a_E6a0.00
1211665.33THY1'protein_coding'14DEGain40.220N/ATHY1N/A
1221675.33TLCD1'protein_coding'26AEGain6.031AB E3_Da0
1231685.32ISM1'protein_coding'16DEGain40.040N/AISM1N/A
1241695.32AC099524.5'protein_coding'223AEGain34.357ES E14a_E16a16.67
1251705.32PSG5'protein_coding'718DEGain39.960N/APSG5N/A
1261715.32RNF145'protein_coding'111AEGain8.681ES E3a_E6a0
1271725.31SCG5'protein_coding'16DEGain39.730N/ASCG5N/A
1281755.29LIMS2'protein_coding'1232DEGain39.130N/ALIMS2N/A
1291795.27C6orf89'protein_coding'415AEGain8.292EU AB E3_Aa0
1301815.27CPNE8'protein_coding'221DEGain38.540N/ACPNE8N/A
1311855.24RPS6KB2'protein_coding'115AEGain10.782ES E13a_E15a0.00
1321875.24SLC26A11'protein_coding'118AEGain8.631ES E6a_E8a0
1331885.24SLC12A7'protein_coding'225AEGain9.511ES E11a_E13a0
1341905.22PSG1'protein_coding'512DEGain37.190N/APSG1N/A
1351945.19KCNK17'protein_coding'27DEGain36.600N/AKCNK17N/A
1361955.19BID'protein_coding'813AEGain2.873AB CE I2_AR50
1371965.19ERG'protein_coding'1020DEGain36.420N/AERGN/A
1381985.18RNF213'protein_coding'143AEGain5.814EU AB E40_Aa0.00
1392005.17FBRS'protein_coding'423AEGain10.263ES E6a_E13a50.00
1402025.17WNT5B'protein_coding'27DEGain35.920N/AWNT5BN/A
1412035.15ATG9A'protein_coding'523AEGain10.523EU ES E1a_E5a50.00
1422065.13IGFBP6'protein_coding'14DEGain34.990N/AIGFBP6N/A
1432085.12AFAP1L2'protein_coding'321DEGain34.723EU ES AFAP1L20.00
1442095.11INTS6'protein_coding'220AEGain8.724ES AB CE E1b_E3a0.00
1452115.11PDLIM1'protein_coding'17AEGain7.771ES E3a_E5a0
1462145.09TPM2'protein_coding'518DEGain34.153EU ES AB TPM20.00
1472165.07MICAL2'protein_coding'329DEGain33.5710EU ES AB MICAL20.00
1482175.07RPGR'protein_coding'622AEGain5.901AB E4_Aa0
1492195.06TMEM178'protein_coding'26DEGain33.440N/ATMEM178N/A
1502225.04DLGAP4'protein_coding'620AEGain8.751EU E11a_E12a0
1512235.04SEMA5A'protein_coding'123DEGain32.920N/ASEMA5AN/A
1522245.04SCARF2'protein_coding'317DEGain32.890N/ASCARF2N/A
1532265.04SGSH'protein_coding'18AEGain6.571ES E2a_E5a0
1542285.03TUBB2B'protein_coding'14DEGain32.700N/ATUBB2BN/A
1552295.03ITGA1'protein_coding'129DEGain32.680N/AITGA1N/A
1562335.01IL20'protein_coding'38AEGain8.902IR I30
1572355.00SCPEP1'protein_coding'215AEGain18.182ES E9a_E11a0.00
1582365.00NCAPD3'protein_coding'135AEGain9.9816EU AB IR E32_Da0.00
1592414.98ARMC4'protein_coding'221DEGain31.670N/AARMC4N/A
1602424.98AXL'protein_coding'220DEGain31.640N/AAXLN/A
1612464.96MASP2'protein_coding'415AEGain7.427EU AB IR E6a_E7a0.00
1622474.96SH3YL1'protein_coding'727AEGain7.502ES AB E3a_E5a0
1632484.95VGLL3'protein_coding'25DEGain30.970N/AVGLL3N/A
1642504.94KLC2'protein_coding'524AEGain9.571ES E11a_E13a0
1652514.94KRT14'protein_coding'18DEGain30.710N/AKRT14N/A
1662534.93PLEKHA1'protein_coding'521AEGain7.146EU ES AB E14a_E15a75.00
1672544.93CORO2B'protein_coding'214DEGain30.550N/ACORO2BN/A
1682564.93PKD2'protein_coding'115DEGain30.470N/APKD2N/A
1692584.92PRRX1'protein_coding'25DEGain30.350N/APRRX1N/A
1702624.91ODZ3'protein_coding'127DEGain30.020N/AODZ3N/A
1712644.90RAP1B'protein_coding'210AEGain17.373EU ES E3a_E5a0.00
1722654.90NPC1'protein_coding'125AEGain8.993ES E9a_E11a0.00
1732664.89SEMA3C'protein_coding'118DEGain29.650N/ASEMA3CN/A
1742684.89NTAN1'protein_coding'110AEGain5.501AB E7_Aa0
1752704.88HMOX2'protein_coding'312AEGain3.452EU AB E1_Ab0
1762744.88hsa-mir-936'miRNA'11DEGain29.410N/Ahsa-mir-936N/A
1772754.87SPARC'protein_coding'110DEGain29.200N/ASPARCN/A
1782774.86PTGS2'protein_coding'110DEGain29.020N/APTGS2N/A
1792784.86ZNF44'protein_coding'419AEGain6.984EU AB E9_Da0
1802814.85AP001120.5'protein_coding'19AEGain9.782EU E8a_E9a100.00
1812824.85GAA'protein_coding'222AEGain6.423EU AB E9_Aa0.00
1822834.84ZNF551'protein_coding'37AEGain6.751AB E4_Aa0
1832844.84KCNMA1'protein_coding'1351DEGain28.6017EU ES AB CE KCNMA150.00
1842854.83BAZ1A'protein_coding'329AEGain16.352ES E1a_E3a0.00
1852864.83CNNM3'protein_coding'28AEGain6.471AB E5_Da0
1862884.82CUL7'protein_coding'126AEGain23.702ES AB E6_Aa0
1872904.82CACNA1C'protein_coding'2764DEGain28.200N/ACACNA1CN/A
1882914.81NEF3'protein_coding'13DEGain28.140N/ANEF3N/A
1892924.81PDLIM2'protein_coding'922AEGain5.655EU ES E2a_E4a50.00
1902934.81BNC1'protein_coding'15DEGain28.060N/ABNC1N/A
1912944.81MRGPRX3'protein_coding'13DEGain28.020N/AMRGPRX3N/A
1922954.80HERC2'protein_coding'193AEGain17.033EU AB E41_Da0
1932994.79MEF2D'protein_coding'516AEGain7.543EU ES E4a_E7a50.00
1943004.79AC124276.5'pseudogene'12DEGain27.640N/AAC124276.5N/A
1953024.79MBP'protein_coding'1329AEGain4.757EU ES AB CE E11a_E14a75.00
1963034.79RARG'protein_coding'313AEGain7.933EU ES E3a_E6a50.00
1973044.78OBSL1'protein_coding'628AEGain7.7415EU AB IR CE I21_SR133.33
1983064.78SDR'protein_coding'12DEGain27.480N/ASDRN/A
1993074.78TNS4'protein_coding'417DEGain27.445EU ES AB TNS433.33
2003084.77CHMP2A'protein_coding'27AEGain6.411EU E1b_E2a0
2013094.77NDE1'protein_coding'515AEGain25.691AB E12_Aa0
2023104.76AL353732.14'protein_coding'14DEGain27.190N/AAL353732.14N/A
2033124.76OSBPL9'protein_coding'835AEGain7.521ES E19a_E23a0
2043144.76LHFP'protein_coding'14DEGain27.131EU LHFP0
2053184.76FAM13A1'protein_coding'325AEGain6.7122EU AB CE ER6a68.75
2063194.75SACM1L'protein_coding'120AEGain19.972EU AB E17_Da0
2073214.75CYP4F11'protein_coding'315DEGain26.865EU ES AB CYP4F1150.00
2083254.74GLTSCR2'protein_coding'220AEGain4.591ES E8c_E10a0
2093264.73SMARCA4'protein_coding'236AEGain7.621ES E32a_E34a0
2103274.73FCHO2'protein_coding'226AEGain6.391ES E17a_E19a0
2113294.72GPR103'protein_coding'29DEGain26.380N/AGPR103N/A
2123304.72ADAMTS2'protein_coding'325DEGain26.330N/AADAMTS2N/A
2133314.72MMP10'protein_coding'110DEGain26.310N/AMMP10N/A
2143334.71EGFL9'protein_coding'412DEGain26.250N/AEGFL9N/A
2153344.71INPPL1'protein_coding'231AEGain8.752ES AB E21a_E23a0
2163364.71SETBP1'protein_coding'27DEGain26.230N/ASETBP1N/A
2173374.71SFI1'protein_coding'438AEGain6.545EU AB E15_Aa33.33
2183384.71ADAMTS1'protein_coding'212DEGain26.141ES ADAMTS10
2193394.70RBMS2'protein_coding'114AEGain6.542ES E7a_E9a0.00
2203404.70EFEMP1'protein_coding'416DEGain25.942EU ES EFEMP10.00
2213414.69ADAMTSL4'protein_coding'529AEGain8.638EU AB IR CE E16b_E17a0.00
2223434.69HMGXB3'protein_coding'120AEGain14.311ES E8a_E10a0
2233464.68GABBR1'protein_coding'1034AEGain31.484EU ES AB E18a_E21a50.00
2243484.67PCCB'protein_coding'115AEGain6.391AB E11_Da0
2253514.67OSR1'protein_coding'13DEGain25.410N/AOSR1N/A
2263524.67LMO7'protein_coding'635AEGain14.395EU ES E3a_E4a75.00
2273544.66ECHDC2'protein_coding'314AEGain6.304EU ES E4a_E11a33.33
2283574.64RIOK3'protein_coding'113AEGain7.911ES E2a_E4a0
2293604.63MAMDC2'protein_coding'114DEGain24.820N/AMAMDC2N/A
2303634.63ZFYVE1'protein_coding'214AEGain6.131AB E9_Da0
2313644.63DAGLB'protein_coding'115AEGain10.842ES E3a_E9a100.00
2323664.62ARHGAP24'protein_coding'515DEGain24.590N/AARHGAP24N/A
2333674.61ACY1'protein_coding'217AEGain6.611AB E4_Aa0
2343684.61ISGF3G'protein_coding'223AEGain6.622ES AB E16a_E18a0
2353694.60DCN'protein_coding'610DEGain24.260N/ADCNN/A
2363754.58PBEF1'protein_coding'417AEGain6.703ES E8a_E11a50.00
2373764.58RBM12'protein_coding'1333AEGain15.865EU ES AB E16a_E18a0.00
2383784.57THSD1'protein_coding'36DEGain12.642EU THSD1100.00
2393794.57SNCA'protein_coding'511DEGain23.720N/ASNCAN/A
2403804.57RNF31'protein_coding'325AEGain7.841AB E3_Da0
2413854.56PRKCG'protein_coding'118AEGain8.232AB CE E3_Aa0
2423894.56FBXW7'protein_coding'416AEGain19.821EU E4a_E5a0
2433904.56NAP1L2'protein_coding'11DEGain23.510N/ANAP1L2N/A
2443934.54RRAD'protein_coding'15AEGain7.563ES AB E2a_E5a0
2453944.54SLC25A26'protein_coding'28AEGain6.131ES E4a_E6a0
2463974.54FAM180A'protein_coding'14DEGain23.190N/AFAM180AN/A
2473984.53NES'protein_coding'314DEGain23.172EU AB NES0
2484024.53RUSC1'protein_coding'718AEGain6.441AB E3_Aa0
2494054.52LAMA1'protein_coding'267DEGain12.2831EU AB LAMA186.21
2504064.52STK11'protein_coding'213AEGain7.251ES E6a_E8a0
2514074.52FBXO32'protein_coding'19AEGain5.784ES AB E6a_E8a0.00


Candidate Differential and Alternative Expression Genes (Loss ONLY)

The following table lists candidate genes ranked according to 'Score'. Only the top 250 genes appear in each list. For a complete list download the results file provided above. To appear in this list, a 'candidate gene' must be differentially expressed at the gene level (DE) or contain at least one alternatively expressed (AE) feature. The 'Score' is based on the fold change as well as other factors for AE events (multiple features supporting the same event, reciprocity, etc.). The 'Event Type' indicates whether the gene was differentially expressed ('DE') or alternatively expressed 'AE'. 'Direction' refers to the direction (+ve/-ve) of the fold change. 'Gain' (+ve) indicates higher expression in library A than library B and vice versa. 'FC' stands for fold change. '# AE Events' is the number of significant alternative expression events observed for each gene. 'AE Codes' refers to various alternative expression subtypes (listed above). The 'Top Feature' is the most significant AE event observed for an AE gene. 'Adjacency' refers to the number of consecutive AE features (potentially supporting the same isoform). 'Adjacency %' refers to the percent of all AE events for a gene that were adjacent to each other.


RankOverall
Rank
ScoreNameGene
Type
Trans.
Count
Exon
Count
Event
Type
DirectionFC# AE
Events
AE CodesTop FeatureAdjacency
%
198.92SPATA5L1'protein_coding'210AELoss-42.2116IR I8_SR50
2128.39PPP1R12B'protein_coding'936AELoss-5.0611EU ES CE E6a_E8a0.00
3158.03TPM1'protein_coding'921AELoss-35.218EU ES E4a_E5a42.86
4177.84DST'protein_coding'9123AELoss-2.90137EU ES AB IR CE I9_AR379.37
5197.73HAS3'protein_coding'37AELoss-2.132ES AB E6_Da0
6227.49GPR81'protein_coding'15AELoss-23.993CE I1_AR10
7277.19LIPH'protein_coding'110DELoss-54.022ES LIPH100.00
8496.61IGSF9'protein_coding'322AELoss-9.936EU AB CE E7_Aa100.00
9526.48GNA11'protein_coding'17AELoss-16.561CE I4_AR30
10656.22OTUD7B'protein_coding'112AELoss-11.742AB E4_Da0
11756.13PI3'protein_coding'13DELoss-69.920N/API3N/A
12786.09MLL'protein_coding'646AELoss-11.081ES E1a_E7a0
13806.06DDR2'protein_coding'219AELoss-6.441AB E5_Aa0
14865.97SLPI'protein_coding'14DELoss-62.630N/ASLPIN/A
15885.96SARM1'protein_coding'213AELoss-10.948EU AB E4_Da75.00
16905.86FBLIM1'protein_coding'515AELoss-14.655EU ES E1a_E2a75.00
17925.84SLC11A2'protein_coding'319AELoss-18.392EU ES ENST00000394904100.00
18945.83LTF'protein_coding'117DELoss-56.960N/ALTFN/A
19975.81BCL2A1'protein_coding'23DELoss-55.972EU BCL2A10.00
20995.80PVRL4'protein_coding'19DELoss-55.630N/APVRL4N/A
211055.74KRT23'protein_coding'211DELoss-53.611ES KRT230
221105.68NEK9'protein_coding'122AELoss-12.092EU AB E18_Da0
231125.67RP1-21O18.1'protein_coding'724AELoss-14.2315EU AB IR E17_Aa71.43
241145.64FRG1'protein_coding'19AELoss-25.611AB E1_Da0
251165.63SLC5A1'protein_coding'115DELoss-49.652EU SLC5A1100.00
261185.62SLC28A3'protein_coding'118DELoss-49.116EU ES SLC28A30.00
271215.59KRT19'protein_coding'16DELoss-48.090N/AKRT19N/A
281255.56DDX47'protein_coding'212AELoss-22.322ES E3a_E5a0.00
291265.55AZGP1'protein_coding'14DELoss-46.901EU AZGP10
301295.53KYNU'protein_coding'523DELoss-46.280N/AKYNUN/A
311315.51CLDN3'protein_coding'11DELoss-45.700N/ACLDN3N/A
321335.50CCL28'protein_coding'13DELoss-45.160N/ACCL28N/A
331345.49SLC34A2'protein_coding'113DELoss-45.000N/ASLC34A2N/A
341415.46SCGB2A2'protein_coding'13DELoss-43.980N/ASCGB2A2N/A
351425.45GABRP'protein_coding'213DELoss-43.864EU ES GABRP33.33
361455.44TNFRSF11B'protein_coding'15DELoss-43.460N/ATNFRSF11BN/A
371475.43KRT15'protein_coding'414DELoss-43.232ES AB KRT150
381485.43MACC1'protein_coding'29DELoss-43.100N/AMACC1N/A
391495.42TRMT61B'protein_coding'17AELoss-7.552EU ES E1a_E6a0.00
401535.40MGP'protein_coding'14DELoss-42.230N/AMGPN/A
411545.39SLMAP'protein_coding'430AELoss-6.7721EU ES AB IR E3a_E11a81.25
421585.36S100A9'protein_coding'13DELoss-41.060N/AS100A9N/A
431605.36EHF'protein_coding'19DELoss-41.002ES EHF100.00
441625.36CLDN4'protein_coding'11DELoss-40.950N/ACLDN4N/A
451655.34CA8'protein_coding'19DELoss-40.430N/ACA8N/A
461735.31DAPP1'protein_coding'19DELoss-39.690N/ADAPP1N/A
471745.31SF1'protein_coding'520AELoss-10.380N/AENST00000334944N/A
481765.29VGLL1'protein_coding'15DELoss-39.000N/AVGLL1N/A
491775.28FGFBP1'protein_coding'25DELoss-38.900N/AFGFBP1N/A
501785.28DNAJC17'protein_coding'111AELoss-29.505AB IR I10_AR10
511805.27LCN2'protein_coding'415DELoss-38.570N/ALCN2N/A
521825.26GRINL1A'protein_coding'1127AELoss-22.0536EU ES AB CE E2a_E3a92.59
531835.25PIGR'protein_coding'111DELoss-38.183EU ES PIGR50.00
541845.25OLA1'protein_coding'415AELoss-8.352ES E9a_E11a0.00
551865.24RP11-20F24.3'unprocessed_pseudogene'16DELoss-37.780N/ARP11-20F24.3N/A
561895.22TFF1'protein_coding'13DELoss-37.360N/ATFF1N/A
571915.21GULP1'protein_coding'930AELoss-6.138EU ES AB IR E2_Ac50.00
581925.21VNN1'protein_coding'17DELoss-36.930N/AVNN1N/A
591935.20UTP20'protein_coding'162AELoss-9.5617AB IR I100
601975.18DEFB1'protein_coding'12DELoss-36.260N/ADEFB1N/A
611995.18B3GNT3'protein_coding'13DELoss-36.170N/AB3GNT3N/A
622015.17AC008734.7'protein_coding'248DELoss-35.960N/AAC008734.7N/A
632045.14VTCN1'protein_coding'512DELoss-35.260N/AVTCN1N/A
642055.14CLDN8'protein_coding'23DELoss-35.190N/ACLDN8N/A
652075.13GSTA1'protein_coding'17DELoss-34.990N/AGSTA1N/A
662105.11S100A8'protein_coding'25DELoss-34.570N/AS100A8N/A
672125.11SULT2B1'protein_coding'28DELoss-34.450N/ASULT2B1N/A
682135.10AC073995.6'protein_coding'151DELoss-34.290N/AAC073995.6N/A
692155.09SCD5'protein_coding'37AELoss-7.562EU AB E4_Da0
702185.07DNMT1'protein_coding'241AELoss-3.432EU AB E5_Aa0
712205.06TMPRSS2'protein_coding'215DELoss-33.280N/ATMPRSS2N/A
722215.05C15orf48'protein_coding'26DELoss-33.061AB C15orf480
732255.04CTBP2'protein_coding'314AELoss-9.392ES E8a_E10a0.00
742275.03NOL9'protein_coding'112AELoss-7.001AB E7_Da0
752305.02CAPN12'protein_coding'121AELoss-8.6814EU AB E15a_E16a0.00
762315.01C9orf150'protein_coding'12DELoss-32.330N/AC9orf150N/A
772325.01SLC6A14'protein_coding'114DELoss-32.310N/ASLC6A14N/A
782345.01PAQR3'protein_coding'418AELoss-5.523ES AB E5a_E7a100.00
792374.99BACE2'protein_coding'39AELoss-7.402ES E1a_E3a0.00
802384.99NCK1'protein_coding'14AELoss-18.471CE I2_AR20
812394.99GNA15'protein_coding'17DELoss-31.720N/AGNA15N/A
822404.99COX4I1'protein_coding'15AELoss-26.681ES E1a_E3a0
832434.98MALL'protein_coding'14DELoss-31.460N/AMALLN/A
842444.97SERPINB7'protein_coding'210DELoss-31.370N/ASERPINB7N/A
852454.97CASP14'protein_coding'16DELoss-31.250N/ACASP14N/A
862494.95ZNF750'protein_coding'13DELoss-30.960N/AZNF750N/A
872524.94MTHFD2L'protein_coding'413AELoss-6.9716EU AB IR E1_Da0
882554.93S100A3'protein_coding'25AELoss-6.422EU ES ER1a100.00
892574.93KRT80'protein_coding'312DELoss-30.421ES KRT800
902594.92ARHGEF10'protein_coding'638AELoss-8.553ES CE E17a_E20a0.00
912604.92LRCH3'protein_coding'119AELoss-7.9526EU ES AB IR CE I13_AR1100.00
922614.91CD24L4'protein_coding'11DELoss-30.060N/ACD24L4N/A
932634.90OLFM4'protein_coding'15DELoss-29.900N/AOLFM4N/A
942674.89MYNN'protein_coding'411AELoss-6.341ES E1a_E4a0
952694.88KRIT1'protein_coding'523AELoss-6.611AB E1_Dd0
962714.88AC073995.6'protein_coding'15DELoss-29.510N/AAC073995.6N/A
972724.88PHYH'protein_coding'415AELoss-8.601EU ER4a0
982734.88KIAA0317'protein_coding'120AELoss-7.823AB IR E7_Da0
992764.87BARX2'protein_coding'14DELoss-29.180N/ABARX2N/A
1002794.86CGN'protein_coding'121DELoss-28.970N/ACGNN/A
1012804.85EIF3EIP'protein_coding'316AELoss-8.361ES E2a_E7a0
1022874.83RNF121'protein_coding'410AELoss-6.741AB E6_Da0
1032894.82ALDH1A3'protein_coding'213DELoss-28.280N/AALDH1A3N/A
1042964.80TFCP2L1'protein_coding'115DELoss-27.910N/ATFCP2L1N/A
1052974.79C15orf62'protein_coding'11DELoss-27.670N/AC15orf62N/A
1062984.79AC105391.1'protein_coding'14DELoss-27.660N/AAC105391.1N/A
1073014.79AC005361.5'protein_coding'26DELoss-27.620N/AAC005361.5N/A
1083054.78WDR54'protein_coding'313AELoss-6.843EU AB E2a_E3a0.00
1093114.76TOP3A'protein_coding'119AELoss-6.4611ES AB IR CE E8_Aa0
1103134.76PTPRK'protein_coding'1152AELoss-10.7610EU AB IR CE ENST00000368202100.00
1113154.76EGFR'protein_coding'431AELoss-2.063EU ES AB E1_Da0.00
1123164.76TRAF1'protein_coding'18AELoss-7.332AB CE E3_Da0
1133174.76S100A1'protein_coding'36DELoss-27.081AB S100A10
1143204.75MIA3'protein_coding'844AELoss-2.583EU ER7c100.00
1153224.75TLR1'protein_coding'14DELoss-26.860N/ATLR1N/A
1163234.74AC093168.3'protein_coding'11DELoss-26.790N/AAC093168.3N/A
1173244.74DDX10'protein_coding'118AELoss-4.471CE I17_AR10
1183284.72WFDC2'protein_coding'46DELoss-26.420N/AWFDC2N/A
1193324.72VEGFB'protein_coding'17AELoss-8.791ES E3a_E6a0
1203354.71CNOT6'protein_coding'318AELoss-6.081AB E8_Aa0
1213424.69BIK'protein_coding'15DELoss-25.820N/ABIKN/A
1223444.69MAP4'protein_coding'935AELoss-7.305ES E5a_E12a0.00
1233454.69RP11-189B4.2'processed_pseudogene'11DELoss-25.750N/ARP11-189B4.2N/A
1243474.68EEF1A2'protein_coding'29DELoss-25.560N/AEEF1A2N/A
1253494.67AC021188.6'protein_coding'16DELoss-25.482EU ES AC021188.60.00
1263504.67C4orf7'protein_coding'15DELoss-25.422EU C4orf70.00
1273534.66ACTR8'protein_coding'214AELoss-7.902ES E5a_E7a0.00
1283554.66GLRX'protein_coding'25DELoss-25.250N/AGLRXN/A
1293564.65C9orf155'protein_coding'518AELoss-45.6021EU ES AB E4a_E5b76.47
1303584.64WDR59'protein_coding'226AELoss-7.232ES E2a_E4a0.00
1313594.63CA12'protein_coding'211AELoss-79.553EU E8a_E9a100.00
1323614.63DIAPH1'protein_coding'638AELoss-6.733ES E1a_E3a0.00
1333624.63GCNT2'protein_coding'614DELoss-24.790N/AGCNT2N/A
1343654.63ZNF12'protein_coding'615AELoss-13.643EU AB E7_Aa0
1353704.60CD44'protein_coding'621AELoss-4.3615EU ES AB E6a_E13a69.23
1363714.59ELF5'protein_coding'28DELoss-24.120N/AELF5N/A
1373724.59RAB27B'protein_coding'16DELoss-24.110N/ARAB27BN/A
1383734.59KCTD7'protein_coding'14AELoss-7.401CE I3_AR20
1393744.58DNAJB5'protein_coding'39AELoss-5.855AB IR I2_AR10
1403774.58C14orf103'protein_coding'242AELoss-5.921AB E18_Aa0
1413814.57NXN'protein_coding'311AELoss-6.281AB E1_Da0
1423824.57CDC27'protein_coding'119AELoss-6.051ES E2a_E6a0
1433834.56CTSH'protein_coding'214AELoss-6.781AB E11_Da0
1443844.56FOXI1'protein_coding'12DELoss-23.630N/AFOXI1N/A
1453864.56KIAA1641'protein_coding'549DELoss-23.610N/AKIAA1641N/A
1463874.56MFI2'protein_coding'217DELoss-23.590N/AMFI2N/A
1473884.56RASEF'protein_coding'218DELoss-23.570N/ARASEFN/A
1483914.55C1orf38'protein_coding'58DELoss-23.450N/AC1orf38N/A
1493924.55EPB41'protein_coding'1230AELoss-6.925EU ES CE ENST0000039886366.67
1503954.54USP28'protein_coding'225AELoss-7.244EU E8a_E9a33.33
1513964.54RBBP9'protein_coding'28AELoss-6.581EU E1a_E2a0
1523994.53GPHN'protein_coding'223AELoss-5.611ES E4a_E6a0
1534004.53ATXN2'protein_coding'530AELoss-7.351ES E8a_E10a0
1544014.53NT5C3'protein_coding'618AELoss-12.176EU AB E2a_E3a100.00
1554034.52NCCRP1'protein_coding'16DELoss-23.010N/ANCCRP1N/A
1564044.52RBM47'protein_coding'413DELoss-23.000N/ARBM47N/A
1574114.51ZBTB44'protein_coding'313AELoss-6.331AB E3_Aa0
1584124.51ZNF148'protein_coding'211AELoss-7.891AB E7_Da0
1594134.50ERBB3'protein_coding'229DELoss-22.700N/AERBB3N/A
1604144.50CLEC16A'protein_coding'432AELoss-6.611ES E17a_E19a0
1614154.50CCL20'protein_coding'26DELoss-22.680N/ACCL20N/A
1624164.50XDH'protein_coding'136AELoss-56.6929EU AB IR CE E1a_E2a90.00
1634184.50MUC15'protein_coding'25DELoss-22.570N/AMUC15N/A
1644204.50MUC16'protein_coding'423DELoss-22.550N/AMUC16N/A
1654214.49KLK5'protein_coding'28DELoss-12.052EU ES KLK5100.00
1664254.47CASZ1'protein_coding'323AELoss-28.596EU ES ER3a80.00
1674264.47EYA3'protein_coding'322AELoss-6.662EU AB E19_Aa0
1684274.47SLC2A9'protein_coding'214AELoss-2.734EU ES AB E1_Da50.00
1694284.47CENPL'protein_coding'411AELoss-6.472EU AB E5a_E6a0
1704334.47IL1RN'protein_coding'513DELoss-22.090N/AIL1RNN/A
1714354.46CCBP2'protein_coding'23DELoss-21.960N/ACCBP2N/A
1724384.45LARGE'protein_coding'420AELoss-5.323CE I3_AR260
1734394.45RFX3'protein_coding'825AELoss-5.983EU ES CE E6a_E9a0.00
1744414.44IQSEC1'protein_coding'114AELoss-6.151ES E10a_E12a0
1754434.43BSPRY'protein_coding'26DELoss-21.600N/ABSPRYN/A
1764444.43BHLHA15'protein_coding'11DELoss-21.540N/ABHLHA15N/A
1774484.42APOBEC3B'protein_coding'413DELoss-21.431ES APOBEC3B0
1784494.42BBC3'protein_coding'35DELoss-11.605EU ES BBC3100.00
1794504.42ARHGEF3'protein_coding'213AELoss-10.336EU ES ER3a100.00
1804534.42PGBD5'protein_coding'211DELoss-21.360N/APGBD5N/A
1814544.42EFCAB4A'protein_coding'211DELoss-21.340N/AEFCAB4AN/A
1824554.41FMNL1'protein_coding'332AELoss-11.3624EU AB ER1c100.00
1834574.41KLK6'protein_coding'49DELoss-21.263EU ES KLK60.00
1844584.41SLC44A4'protein_coding'325DELoss-21.250N/ASLC44A4N/A
1854604.41BATF'protein_coding'13DELoss-21.220N/ABATFN/A
1864614.41GTF2H4'protein_coding'216AELoss-6.051ES E2a_E4a0
1874624.40C1QL2'protein_coding'12DELoss-21.110N/AC1QL2N/A
1884634.39TMPRSS13'protein_coding'213DELoss-21.010N/ATMPRSS13N/A
1894644.39RGS3'protein_coding'1037AELoss-3.948EU ES AB CE E26a_E27a60.00
1904654.39GOLGA4'protein_coding'324AELoss-5.232ES E13a_E15a0.00
1914674.39ANKRD30A'protein_coding'343DELoss-20.990N/AANKRD30AN/A
1924694.39AC099646.6'protein_coding'120DELoss-20.910N/AAC099646.6N/A
1934704.38CXCL17'protein_coding'14DELoss-20.820N/ACXCL17N/A
1944764.37ECD'protein_coding'114AELoss-5.301ES E1a_E3a0
1954774.37KLK11'protein_coding'49DELoss-20.680N/AKLK11N/A
1964784.37RHOV'protein_coding'13DELoss-20.681ES RHOV0
1974794.37JMJD2C'protein_coding'325AELoss-6.602EU ES E2a_E4a0.00
1984814.36ANP32B'protein_coding'17AELoss-6.701ES E4a_E6a0
1994854.35KLK7'protein_coding'39DELoss-20.450N/AKLK7N/A
2004934.33TNIP3'protein_coding'213DELoss-20.140N/ATNIP3N/A
2014944.33IGF2BP2'protein_coding'216DELoss-20.122ES IGF2BP20.00
2024964.33GATA6'protein_coding'17DELoss-20.111CE GATA60
2034974.33AL136362.10'protein_coding'14AELoss-4.042EU AB E2_Aa0
2045044.31MBD6'protein_coding'218AELoss-6.891ES E6a_E8a0
2055124.29TTC9'protein_coding'13DELoss-19.571ES TTC90
2065134.29TCIRG1'protein_coding'120DELoss-19.550N/ATCIRG1N/A
2075164.28SCGB2A1'protein_coding'13DELoss-19.470N/ASCGB2A1N/A
2085184.28MMP7'protein_coding'16DELoss-19.421ES MMP70
2095194.28PARP2'protein_coding'116AELoss-13.392ES AB E15_Aa0
2105224.28RIF1'protein_coding'338AELoss-6.422ES E4a_E6a0.00
2115264.27CDCP1'protein_coding'19AELoss-40.155EU ES AB CE I4_AR1100.00
2125274.26PKIB'protein_coding'716DELoss-19.110N/APKIBN/A
2135284.25RTP4'protein_coding'12DELoss-19.020N/ARTP4N/A
2145294.25MUC1'protein_coding'1222DELoss-19.016EU ES AB MUC10.00
2155314.25AC025580.8'snoRNA_pseudogene'11DELoss-18.990N/AAC025580.8N/A
2165324.25KRT16'protein_coding'18DELoss-18.970N/AKRT16N/A
2175354.24PDZK1IP1'protein_coding'27DELoss-18.940N/APDZK1IP1N/A
2185404.23KIAA0182'protein_coding'319AELoss-21.285EU ES AB E2_Ab66.67
2195434.22SERPINB4'protein_coding'28DELoss-18.590N/ASERPINB4N/A
2205504.20GPR109A'protein_coding'11DELoss-18.370N/AGPR109AN/A
2215514.20GRHL1'protein_coding'426DELoss-18.360N/AGRHL1N/A
2225524.19NCALD'protein_coding'511DELoss-18.290N/ANCALDN/A
2235534.19MARK2'protein_coding'827AELoss-13.711ES E2a_E4a0
2245544.19AGK'protein_coding'115AELoss-6.461AB E15_Aa0
2255554.19TMEM49'protein_coding'112AELoss-6.5021EU ES AB IR CE E12_Aa85.71
2265594.18SEC11B'protein_coding'16AELoss-11.941ES E1a_E5a0
2275614.18SDCBP2'protein_coding'513DELoss-18.072EU AB SDCBP20
2285634.17ETFA'protein_coding'112AELoss-5.841ES E5a_E7a0
2295664.17DMTF1'protein_coding'323AELoss-6.272EU ES E4a_E5a0.00
2305674.17NEDD4L'protein_coding'634AELoss-5.816EU ES ER15a60.00
2315704.16EMP1'protein_coding'26DELoss-17.910N/AEMP1N/A
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2345774.15TCN1'protein_coding'19DELoss-17.770N/ATCN1N/A
2355784.15KIAA0513'protein_coding'113AELoss-15.173EU AB E8_Da100.00
2365804.15INPP4B'protein_coding'225AELoss-9.919EU ES E1a_E2a75.00
2375814.14MLPH'protein_coding'421DELoss-17.680N/AMLPHN/A
2385834.14KIAA0141'protein_coding'112AELoss-6.391AB E10_Da0
2395844.14WDR33'protein_coding'426AELoss-4.732ES AB E22_Aa0
2405884.13STEAP3'protein_coding'614DELoss-17.550N/ASTEAP3N/A
2415904.13PTPN21'protein_coding'118AELoss-5.561AB E16_Aa0
2425924.13ATP11B'protein_coding'130AELoss-5.822ES AB E22a_E24a0
2435934.13PTK2'protein_coding'750AELoss-6.513ES AB CE E6_Da0
2445964.12SFRS12'protein_coding'316AELoss-6.251ES E11a_E13a0
2455974.12GJC3'protein_coding'24DELoss-17.330N/AGJC3N/A
2466014.11RHPN2'protein_coding'115DELoss-17.242EU RHPN20.00
2476034.11RPRD1B'protein_coding'17AELoss-6.391ES E1a_E4a0
2486084.10LMBR1'protein_coding'525AELoss-3.482ES AB E3_Da0
2496094.09SMARCA2'protein_coding'1150AELoss-6.413AB E25_Aa0
2506104.09ADK'protein_coding'212AELoss-5.222EU ES E7a_E9a0.00
2516114.09ST14'protein_coding'119DELoss-17.001ES ST140