Summary page for comparison: 'Lum_Epi2_vs_StemLike' (A01029_vs_A01031) - Project: Breast


Download complete candidate list as tab delimited text file: Lum_Epi2_vs_StemLike.txt


Summary of Differential (DE) and Alternative Expression (AE) for all gene loci:

Total Candidate Genes: 7,396 (of 36,953 possible genes)

DE Genes: 4,180

AE Genes: 4,481

Alternative Exon Usage (EU) Genes: 2,285

Alernative Exon Skipping (ES) Genes: 1,882

Alternative Exon Boundary (AB) Genes: 1,461

Intron Retention (IR) Genes: 260

Cryptic Exon (CE) Genes: 450


Candidate Differential AND Alternative Expression Genes

The following table lists candidate genes ranked according to 'Score'. Only the top 250 genes appear in each list. For a complete list download the results file provided above. To appear in this list, a 'candidate gene' must be differentially expressed at the gene level (DE) or contain at least one alternatively expressed (AE) feature. The 'Score' is based on the fold change as well as other factors for AE events (multiple features supporting the same event, reciprocity, etc.). The 'Event Type' indicates whether the gene was differentially expressed ('DE') or alternatively expressed 'AE'. 'Direction' refers to the direction (+ve/-ve) of the fold change. 'Gain' (+ve) indicates higher expression in library A than library B and vice versa. 'FC' stands for fold change. '# AE Events' is the number of significant alternative expression events observed for each gene. 'AE Codes' refers to various alternative expression subtypes (listed above). The 'Top Feature' is the most significant AE event observed for an AE gene. 'Adjacency' refers to the number of consecutive AE features (potentially supporting the same isoform). 'Adjacency %' refers to the percent of all AE events for a gene that were adjacent to each other.


RankOverall
Rank
ScoreNameGene
Type
Trans.
Count
Exon
Count
Event
Type
DirectionFC# AE
Events
AE CodesTop FeatureAdjacency
%
1112.00MTUS1'protein_coding'619AELoss-78.9713EU ES E9a_E10a83.33
2211.47DCN'protein_coding'610DELoss-2839.940N/ADCNN/A
3311.07MMP2'protein_coding'113DELoss-2147.360N/AMMP2N/A
4410.72LUM'protein_coding'13DELoss-1684.660N/ALUMN/A
5510.36MAP7D1'protein_coding'629AELoss-75.877EU ES E5a_E10a33.33
669.90SFRP4'protein_coding'16DELoss-955.530N/ASFRP4N/A
779.70C1S'protein_coding'634AEGain4.661AB E4_Aa0
889.70C13orf33'protein_coding'15DELoss-829.240N/AC13orf33N/A
999.53FAM180A'protein_coding'14DELoss-739.680N/AFAM180AN/A
10109.34BDKRB1'protein_coding'13DELoss-650.090N/ABDKRB1N/A
11118.90PRRX1'protein_coding'25DELoss-478.040N/APRRX1N/A
12128.89MSC'protein_coding'12DELoss-474.960N/AMSCN/A
13138.89OGN'protein_coding'210DELoss-472.970N/AOGNN/A
14148.83FGF7'protein_coding'14DELoss-455.380N/AFGF7N/A
15158.83BRE'protein_coding'721AELoss-122.5411EU AB CE I1_AR180.00
16168.82LRRFIP1'protein_coding'632AELoss-24.387EU ES E20a_E23a66.67
17178.68THBS2'protein_coding'224DELoss-409.050N/ATHBS2N/A
18188.67SFRP2'protein_coding'13DELoss-408.390N/ASFRP2N/A
19198.59FBLN1'protein_coding'627DELoss-385.440N/AFBLN1N/A
20208.56COL1A2'protein_coding'254DELoss-376.350N/ACOL1A2N/A
21218.51TAC1'protein_coding'37DELoss-363.430N/ATAC1N/A
22228.49MFAP4'protein_coding'28DELoss-358.460N/AMFAP4N/A
23238.40SPTBN1'protein_coding'338AELoss-25.475EU ES ER2a100.00
24248.40CLIC2'protein_coding'27DELoss-336.800N/ACLIC2N/A
25258.34SERPINF1'protein_coding'18DELoss-324.230N/ASERPINF1N/A
26268.33CFD'protein_coding'15DELoss-321.120N/ACFDN/A
27278.30TWIST1'protein_coding'25DELoss-315.860N/ATWIST1N/A
28288.27DPT'protein_coding'14DELoss-309.020N/ADPTN/A
29298.26ABI3BP'protein_coding'567DELoss-306.020N/AABI3BPN/A
30308.18TCEAL7'protein_coding'26DELoss-289.250N/ATCEAL7N/A
31318.13AL117190.6'protein_coding'18DELoss-279.340N/AAL117190.6N/A
32328.09PTPRE'protein_coding'222AELoss-48.1811EU ES CE E4a_E6a83.33
33338.03FST'protein_coding'28DELoss-260.630N/AFSTN/A
34347.97AL117190.6'protein_coding'16DELoss-249.950N/AAL117190.6N/A
35357.94ZEB2'protein_coding'520DELoss-246.270N/AZEB2N/A
36367.93APOD'protein_coding'15DELoss-244.690N/AAPODN/A
37377.93CXCL14'protein_coding'14DELoss-243.720N/ACXCL14N/A
38387.93SLC2A3'protein_coding'212DELoss-243.230N/ASLC2A3N/A
39397.92TEP1'protein_coding'257AELoss-11.699EU ES AB E25_Da28.57
40407.92COL3A1'protein_coding'254DELoss-242.690N/ACOL3A1N/A
41417.89CFH'protein_coding'425DELoss-237.450N/ACFHN/A
42427.85CHRDL1'protein_coding'419DELoss-230.820N/ACHRDL1N/A
43437.83TMUB1'protein_coding'25AELoss-38.714EU ES E2a_E3a100.00
44447.82BGN'protein_coding'211DELoss-226.100N/ABGNN/A
45457.82RP1-21O18.1'protein_coding'724AEGain12.1823EU ES AB IR CE E17_Da72.73
46467.81PRPF40B'protein_coding'431AELoss-28.7335EU AB IR CE I16_SR175.00
47477.79CDK2AP1'protein_coding'14AELoss-30.101AB E4_Aa0
48487.76AKR1C1'protein_coding'211DELoss-216.472EU AKR1C10.00
49497.75ELL3'protein_coding'111AEGain32.9043EU AB IR CE E5a_E6a66.67
50507.73GPC3'protein_coding'311DELoss-212.770N/AGPC3N/A
51517.72AC087521.10'protein_coding'11DELoss-210.900N/AAC087521.10N/A
52527.71VCAM1'protein_coding'414DELoss-208.980N/AVCAM1N/A
53537.70ALDH1A1'protein_coding'216DELoss-207.270N/AALDH1A1N/A
54547.69MMP3'protein_coding'110DELoss-206.730N/AMMP3N/A
55557.66TFDP2'protein_coding'418AELoss-20.337AB CE E5_Da0
56567.65COL1A1'protein_coding'151AELoss-524.264EU AB CE E1a_E2a100.00
57577.64CDH11'protein_coding'317DELoss-200.100N/ACDH11N/A
58587.64LY75'protein_coding'443AEGain15.4775EU AB CE ER23a91.67
59597.57TNFRSF4'protein_coding'28DELoss-189.930N/ATNFRSF4N/A
60607.53MMP10'protein_coding'110DELoss-184.650N/AMMP10N/A
61617.50EDNRB'protein_coding'29DELoss-181.280N/AEDNRBN/A
62627.48FBXL10'protein_coding'530AELoss-31.059EU AB E8_Aa50.00
63637.47WNT2'protein_coding'15DELoss-177.220N/AWNT2N/A
64647.46GSN'protein_coding'936AEGain14.217EU ES E7a_E11b100.00
65657.46CALD1'protein_coding'417AELoss-23.093EU ES E4a_E5a0.00
66667.42MMP19'protein_coding'312DELoss-170.790N/AMMP19N/A
67677.42FN1'protein_coding'1050DELoss-170.790N/AFN1N/A
68687.40GPNMB'protein_coding'314DELoss-168.550N/AGPNMBN/A
69697.37AL117190.6'protein_coding'14DELoss-165.940N/AAL117190.6N/A
70707.37PBRM1'protein_coding'940AELoss-35.9426EU ES AB IR CE E27a_E30a75.00
71717.37F2RL2'protein_coding'12DELoss-165.550N/AF2RL2N/A
72727.36C21orf63'protein_coding'415AELoss-18.705AB CE I7_AR70
73737.35ORMDL2'protein_coding'14AELoss-16.3010AB IR CE I3_SR20
74747.32IGFBP6'protein_coding'14DELoss-160.180N/AIGFBP6N/A
75757.32COL5A3'protein_coding'167DELoss-159.510N/ACOL5A3N/A
76767.31NID1'protein_coding'220DELoss-158.420N/ANID1N/A
77777.30COL6A3'protein_coding'850DELoss-157.820N/ACOL6A3N/A
78787.26TIMP3'protein_coding'28DELoss-153.330N/ATIMP3N/A
79797.24PTGDS'protein_coding'310DELoss-150.700N/APTGDSN/A
80807.23S100A7'protein_coding'25AEGain11.382EU ES E1a_E3a100.00
81817.21MTCH1'protein_coding'521AELoss-58.523ES E10a_E12a0.00
82827.20MYH10'protein_coding'446AEGain15.8219EU AB IR E43_Aa0.00
83837.19HGF'protein_coding'321DELoss-146.470N/AHGFN/A
84847.19GPR133'protein_coding'327DELoss-146.340N/AGPR133N/A
85857.19SRPX'protein_coding'211DELoss-145.670N/ASRPXN/A
86867.11COL14A1'protein_coding'349DELoss-137.850N/ACOL14A1N/A
87877.09PDGFRB'protein_coding'123DELoss-136.000N/APDGFRBN/A
88887.04GREM1'protein_coding'24DELoss-131.480N/AGREM1N/A
89897.03CXCL12'protein_coding'610DELoss-131.010N/ACXCL12N/A
90907.02C11orf53'protein_coding'25DELoss-129.370N/AC11orf53N/A
91916.99TTBK2'protein_coding'322AEGain13.933AB E11_Da0
92926.97IL6'protein_coding'616DELoss-125.530N/AIL6N/A
93936.94PAPPA'protein_coding'122DELoss-123.180N/APAPPAN/A
94946.93CTSK'protein_coding'210DELoss-122.321ES CTSK0
95956.93HSPB6'protein_coding'13DELoss-121.610N/AHSPB6N/A
96966.93CCND2'protein_coding'15DELoss-121.580N/ACCND2N/A
97976.92RCN3'protein_coding'17DELoss-121.200N/ARCN3N/A
98986.91DTNA'protein_coding'1340AELoss-5.616EU ES AB CE ENST000003991140.00
99996.90CXCR7'protein_coding'12DELoss-119.270N/ACXCR7N/A
1001006.89CD44'protein_coding'621AEGain9.2923EU ES AB E6a_E13a76.19
1011016.88SERPINE1'protein_coding'19DELoss-117.730N/ASERPINE1N/A
1021026.84PENK'protein_coding'12DELoss-114.660N/APENKN/A
1031036.83RSPO3'protein_coding'27DELoss-114.110N/ARSPO3N/A
1041046.83FBLN2'protein_coding'320DELoss-113.470N/AFBLN2N/A
1051056.80CTSL1'protein_coding'414DELoss-111.824EU ES AB CTSL10.00
1061066.79FNBP1'protein_coding'525AELoss-46.616EU ES AB E4_Aa0.00
1071076.77DLK1'protein_coding'39DELoss-109.200N/ADLK1N/A
1081086.74HDAC9'protein_coding'634AELoss-14.6822EU AB CE E27_Aa60.00
1091096.70SOD3'protein_coding'12DELoss-104.240N/ASOD3N/A
1101106.68PDPN'protein_coding'411DELoss-102.420N/APDPNN/A
1111116.64PODN'protein_coding'317DELoss-99.730N/APODNN/A
1121126.63C12orf50'protein_coding'216DELoss-99.130N/AC12orf50N/A
1131136.62AKAP2'protein_coding'723DELoss-39.386EU ES AKAP260.00
1141146.62ASPN'protein_coding'311DELoss-98.130N/AASPNN/A
1151156.61CBX4'protein_coding'27AELoss-11.055EU ES E3a_E5a75.00
1161166.60IGFBP7'protein_coding'15DELoss-97.160N/AIGFBP7N/A
1171176.60JAM3'protein_coding'19DELoss-97.120N/AJAM3N/A
1181186.60BASP1'protein_coding'12DELoss-96.740N/ABASP1N/A
1191196.60ALDH1A2'protein_coding'213DELoss-96.670N/AALDH1A2N/A
1201206.59WDR8'protein_coding'414AELoss-11.843EU AB E7_Da0
1211216.59HTRA1'protein_coding'19DELoss-96.410N/AHTRA1N/A
1221226.58ZNF436'protein_coding'411AELoss-10.712EU ES E1a_E3a100.00
1231236.58CA9'protein_coding'111AELoss-6.272EU AB E7_Da0
1241246.55FLNB'protein_coding'447AELoss-5.793EU ES E38a_E39a0.00
1251256.50MAP2K3'protein_coding'520AELoss-12.014ES E10a_E14a33.33
1261266.48ARSG'protein_coding'111AELoss-146.5511EU ES AB CE E8a_E9a100.00
1271276.48OLFML3'protein_coding'38DELoss-89.540N/AOLFML3N/A
1281286.48SVIL'protein_coding'342AELoss-15.4210EU ES E4a_E5a66.67
1291296.47RARRES2'protein_coding'16DELoss-88.910N/ARARRES2N/A
1301306.44C17orf81'protein_coding'412AEGain36.1826EU AB IR E4_Da0.00
1311316.42FHL1'protein_coding'714DELoss-85.780N/AFHL1N/A
1321326.42CLIP3'protein_coding'114DELoss-85.430N/ACLIP3N/A
1331336.40CPNE8'protein_coding'221DELoss-84.610N/ACPNE8N/A
1341346.39COL5A2'protein_coding'154DELoss-83.830N/ACOL5A2N/A
1351356.38RBM3'protein_coding'514AELoss-17.501ES E2a_E7a0
1361366.38IGF2'protein_coding'817DELoss-83.250N/AIGF2N/A
1371376.38RASA1'protein_coding'226AELoss-16.3944ES AB IR CE I10_SR30
1381386.37NRP1'protein_coding'1231DELoss-82.940N/ANRP1N/A
1391396.36DCAMKL1'protein_coding'521DELoss-82.180N/ADCAMKL1N/A
1401406.33ADAM33'protein_coding'733DELoss-80.700N/AADAM33N/A
1411416.32ARHGEF11'protein_coding'345AELoss-42.767EU ES E39a_E40a50.00
1421426.31PTGS2'protein_coding'110DELoss-79.550N/APTGS2N/A
1431436.30IFRD2'protein_coding'115AELoss-12.662ES AB E7a_E12a0
1441446.29BHLHE22'protein_coding'11DELoss-78.470N/ABHLHE22N/A
1451456.29MARK3'protein_coding'321AELoss-9.847EU ES E16a_E17a100.00
1461466.28LRRC32'protein_coding'36DELoss-77.640N/ALRRC32N/A
1471476.27PCOLCE'protein_coding'19DELoss-77.050N/APCOLCEN/A
1481486.26SLC35A2'protein_coding'616AELoss-11.792EU AB E5_Aa0
1491496.25ADAMTS2'protein_coding'325DELoss-76.290N/AADAMTS2N/A
1501506.24ZFPM2'protein_coding'314DELoss-75.710N/AZFPM2N/A
1511516.24SPAG9'protein_coding'646AELoss-33.983EU E29a_E30a100.00
1521526.23PI16'protein_coding'17DELoss-74.880N/API16N/A
1531536.21RPS19'protein_coding'16AELoss-11.861ES E4a_E6a0
1541546.21RP11-529I10.4'protein_coding'411AELoss-8.274EU E5a_E6a66.67
1551556.20ENPEP'protein_coding'120DELoss-73.600N/AENPEPN/A
1561566.20MIDN'protein_coding'210AELoss-13.352ES E3a_E5a0.00
1571576.19FMOD'protein_coding'13DELoss-72.870N/AFMODN/A
1581586.18ATXN3'protein_coding'514AEGain10.192ES AB E5_Da0
1591596.17SLIT3'protein_coding'237DELoss-72.020N/ASLIT3N/A
1601606.17CACNA1G'protein_coding'642DELoss-71.880N/ACACNA1GN/A
1611616.15TSC22D1'protein_coding'25AELoss-13.341ES E1a_E3a0
1621626.15HDAC7'protein_coding'427AELoss-6.891ES E6a_E10a0
1631636.15ABLIM1'protein_coding'1540AEGain10.5518EU ES AB ER6a78.57
1641646.14KIRREL'protein_coding'520DELoss-70.660N/AKIRRELN/A
1651656.13OMD'protein_coding'13DELoss-70.030N/AOMDN/A
1661666.12CNN1'protein_coding'17DELoss-69.591ES CNN10
1671676.11CKB'protein_coding'18AELoss-11.202ES E3a_E7a0.00
1681686.10FXYD6'protein_coding'18DELoss-68.690N/AFXYD6N/A
1691696.10GEM'protein_coding'26DELoss-68.392CE GEM0
1701706.09RUVBL1'protein_coding'111AELoss-11.4533EU AB IR CE E6_Aa0.00
1711716.09ACTL6A'protein_coding'216AELoss-10.731AB E8_Aa0
1721726.08LRP1'protein_coding'392DELoss-67.520N/ALRP1N/A
1731736.07ANGPTL2'protein_coding'26DELoss-67.100N/AANGPTL2N/A
1741746.07AP000350.4'protein_coding'13AELoss-12.181EU ER1a0
1751756.06SERPING1'protein_coding'617DELoss-66.870N/ASERPING1N/A
1761766.06CLSTN1'protein_coding'319AELoss-9.005EU ES ER11a75.00
1771776.05ARRDC1'protein_coding'211AELoss-4.354AB IR E7_Aa0
1781786.04CSPG2'protein_coding'415DELoss-66.020N/ACSPG2N/A
1791796.04COL15A1'protein_coding'142DELoss-65.790N/ACOL15A1N/A
1801806.04ERBB2'protein_coding'228AELoss-4.472EU AB E20_Aa0
1811816.03CAPN6'protein_coding'113DELoss-65.410N/ACAPN6N/A
1821826.03DDAH2'protein_coding'311AELoss-12.993ES E4a_E6a0.00
1831836.03ADAMTS12'protein_coding'124DELoss-65.320N/AADAMTS12N/A
1841846.03AEBP1'protein_coding'121DELoss-65.134EU ES AEBP133.33
1851856.02EGFLAM'protein_coding'629DELoss-64.880N/AEGFLAMN/A
1861866.01MTSS1L'protein_coding'217AELoss-14.191ES E11a_E13a0
1871876.01MXRA8'protein_coding'314DELoss-64.310N/AMXRA8N/A
1881886.00PFDN1'protein_coding'14AELoss-13.153AB CE I2_AR50
1891896.00ACTN4'protein_coding'121AELoss-5.861ES E18a_E20a0
1901906.00SLC12A8'protein_coding'320AEGain4.8411EU AB E2_Ab66.67
1911915.99CENTG2'protein_coding'524AELoss-8.795EU ES AB E2a_E3a33.33
1921925.99ECM2'protein_coding'314DELoss-63.600N/AECM2N/A
1931935.99CLEC3B'protein_coding'13DELoss-63.410N/ACLEC3BN/A
1941945.99FXYD1'protein_coding'18DELoss-63.400N/AFXYD1N/A
1951955.98PRPF38B'protein_coding'412AEGain9.713EU E1a_E2a100.00
1961965.98AP000926.6'protein_coding'28DELoss-63.020N/AAP000926.6N/A
1971975.97MAB21L1'protein_coding'11DELoss-62.770N/AMAB21L1N/A
1981985.96AC009171.3'protein_coding'15AELoss-11.6313EU AB IR CE E2_Aa0
1991995.96BICC1'protein_coding'223DELoss-62.110N/ABICC1N/A
2002005.94FLRT2'protein_coding'12DELoss-61.400N/AFLRT2N/A
2012015.94FOXP4'protein_coding'524AELoss-13.482EU ES E2a_E14a0.00
2022025.94ENPP2'protein_coding'226DELoss-61.260N/AENPP2N/A
2032035.93ARID5B'protein_coding'212AEGain10.497EU ES AB E2a_E3a40.00
2042045.93FBXL7'protein_coding'13DELoss-60.760N/AFBXL7N/A
2052055.91POSTN'protein_coding'524DELoss-59.970N/APOSTNN/A
2062065.90SLK'protein_coding'219AEGain12.854EU ES ENST00000369755100.00
2072075.90LAMA4'protein_coding'647DELoss-59.530N/ALAMA4N/A
2082085.89BNIP2'protein_coding'212AEGain12.871AB E4_Da0
2092095.88AC090625.5'protein_coding'314DELoss-59.060N/AAC090625.5N/A
2102105.88SEC16A'protein_coding'842AELoss-9.255EU ES AB E23f_E25a33.33
2112115.87FYN'protein_coding'721DELoss-58.320N/AFYNN/A
2122125.87ACTN1'protein_coding'224AELoss-7.932EU ES E18a_E20a0.00
2132135.86SLC30A4'protein_coding'18AELoss-5.136EU AB E5a_E6a0
2142145.86DOCK1'protein_coding'253AELoss-14.333EU CE I30_AR30.00
2152155.85FNIP1'protein_coding'320AEGain6.667EU ES CE E6a_E7a100.00
2162165.85MACF1'protein_coding'10116AELoss-11.9719EU ES CE E44a_E45a52.94
2172175.85MBP'protein_coding'1329AELoss-4.682EU ES E11a_E14a100.00
2182185.83HIP1R'protein_coding'236AELoss-2.949EU AB IR E3_Aa0.00
2192195.83MRGPRF'protein_coding'25DELoss-57.060N/AMRGPRFN/A
2202205.82MTHFD1'protein_coding'128AELoss-9.444EU AB E23_Da0
2212215.80DHRS12'protein_coding'210AEGain9.374EU AB E1_Da100.00
2222225.79NXN'protein_coding'311AEGain12.241AB E1_Da0
2232235.78SORBS3'protein_coding'121AELoss-21.6622EU ES ER8a100.00
2242245.77FBLN5'protein_coding'314AEGain6.1415EU ES AB E10_Aa92.31
2252255.77CCL3'protein_coding'13DELoss-54.600N/ACCL3N/A
2262265.76ETNK1'protein_coding'312AEGain8.674AB CE E5_Da0
2272275.76PCDH18'protein_coding'26DELoss-54.170N/APCDH18N/A
2282285.76LRRC23'protein_coding'310AELoss-11.0316EU AB IR CE E1_Da0.00
2292295.76PAFAH1B3'protein_coding'15AELoss-9.562AB E4_Da0
2302305.76ANK2'protein_coding'553DELoss-54.060N/AANK2N/A
2312315.75NR0B1'protein_coding'24DELoss-53.790N/ANR0B1N/A
2322325.74AC099524.5'protein_coding'223AELoss-6.562ES E14a_E16a0.00
2332335.74MEF2A'protein_coding'314AEGain10.472ES E3a_E5a0.00
2342345.74WISP2'protein_coding'411DELoss-53.420N/AWISP2N/A
2352355.73RTN2'protein_coding'212AEGain10.5426EU AB IR E5a_E6a50.00
2362365.72LPAR1'protein_coding'39DELoss-52.860N/ALPAR1N/A
2372375.71IL33'protein_coding'17DELoss-52.460N/AIL33N/A
2382385.71MMP1'protein_coding'110DELoss-52.420N/AMMP1N/A
2392395.70DNM2'protein_coding'526AELoss-9.103ES E14a_E18a0.00
2402405.70AGTR1'protein_coding'55DELoss-52.130N/AAGTR1N/A
2412415.69AP002448.3'protein_coding'15DELoss-51.690N/AAP002448.3N/A
2422425.69ZNF688'protein_coding'515AELoss-11.555CE I9_AR370
2432435.68SEMA3B'protein_coding'221AELoss-3.244EU AB ER1a100.00
2442445.67C10orf72'protein_coding'29DELoss-51.060N/AC10orf72N/A
2452455.66NUDT5'protein_coding'518AELoss-8.843AB E10_Da0
2462465.66TCEAL5'protein_coding'13DELoss-50.540N/ATCEAL5N/A
2472475.65EBF1'protein_coding'322DELoss-50.370N/AEBF1N/A
2482485.65CSTF3'protein_coding'121AELoss-19.153EU AB E8_Aa100.00
2492495.64IGF1'protein_coding'513DELoss-49.830N/AIGF1N/A
2502505.64ADH1B'protein_coding'211DELoss-49.810N/AADH1BN/A
2512515.64ESNA1'protein_coding'522AELoss-7.3424EU ES AB E12a_E14a90.91


Candidate Alternative Expression Genes

The following table lists candidate genes ranked according to 'Score'. Only the top 250 genes appear in each list. For a complete list download the results file provided above. To appear in this list, a 'candidate gene' must be differentially expressed at the gene level (DE) or contain at least one alternatively expressed (AE) feature. The 'Score' is based on the fold change as well as other factors for AE events (multiple features supporting the same event, reciprocity, etc.). The 'Event Type' indicates whether the gene was differentially expressed ('DE') or alternatively expressed 'AE'. 'Direction' refers to the direction (+ve/-ve) of the fold change. 'Gain' (+ve) indicates higher expression in library A than library B and vice versa. 'FC' stands for fold change. '# AE Events' is the number of significant alternative expression events observed for each gene. 'AE Codes' refers to various alternative expression subtypes (listed above). The 'Top Feature' is the most significant AE event observed for an AE gene. 'Adjacency' refers to the number of consecutive AE features (potentially supporting the same isoform). 'Adjacency %' refers to the percent of all AE events for a gene that were adjacent to each other.


RankOverall
Rank
ScoreNameGene
Type
Trans.
Count
Exon
Count
Event
Type
DirectionFC# AE
Events
AE CodesTop FeatureAdjacency
%
1112.00MTUS1'protein_coding'619AELoss-78.9713EU ES E9a_E10a83.33
2510.36MAP7D1'protein_coding'629AELoss-75.877EU ES E5a_E10a33.33
379.70C1S'protein_coding'634AEGain4.661AB E4_Aa0
4158.83BRE'protein_coding'721AELoss-122.5411EU AB CE I1_AR180.00
5168.82LRRFIP1'protein_coding'632AELoss-24.387EU ES E20a_E23a66.67
6238.40SPTBN1'protein_coding'338AELoss-25.475EU ES ER2a100.00
7328.09PTPRE'protein_coding'222AELoss-48.1811EU ES CE E4a_E6a83.33
8397.92TEP1'protein_coding'257AELoss-11.699EU ES AB E25_Da28.57
9437.83TMUB1'protein_coding'25AELoss-38.714EU ES E2a_E3a100.00
10457.82RP1-21O18.1'protein_coding'724AEGain12.1823EU ES AB IR CE E17_Da72.73
11467.81PRPF40B'protein_coding'431AELoss-28.7335EU AB IR CE I16_SR175.00
12477.79CDK2AP1'protein_coding'14AELoss-30.101AB E4_Aa0
13487.76AKR1C1'protein_coding'211DELoss-216.472EU AKR1C10.00
14497.75ELL3'protein_coding'111AEGain32.9043EU AB IR CE E5a_E6a66.67
15557.66TFDP2'protein_coding'418AELoss-20.337AB CE E5_Da0
16567.65COL1A1'protein_coding'151AELoss-524.264EU AB CE E1a_E2a100.00
17587.64LY75'protein_coding'443AEGain15.4775EU AB CE ER23a91.67
18627.48FBXL10'protein_coding'530AELoss-31.059EU AB E8_Aa50.00
19647.46GSN'protein_coding'936AEGain14.217EU ES E7a_E11b100.00
20657.46CALD1'protein_coding'417AELoss-23.093EU ES E4a_E5a0.00
21707.37PBRM1'protein_coding'940AELoss-35.9426EU ES AB IR CE E27a_E30a75.00
22727.36C21orf63'protein_coding'415AELoss-18.705AB CE I7_AR70
23737.35ORMDL2'protein_coding'14AELoss-16.3010AB IR CE I3_SR20
24807.23S100A7'protein_coding'25AEGain11.382EU ES E1a_E3a100.00
25817.21MTCH1'protein_coding'521AELoss-58.523ES E10a_E12a0.00
26827.20MYH10'protein_coding'446AEGain15.8219EU AB IR E43_Aa0.00
27916.99TTBK2'protein_coding'322AEGain13.933AB E11_Da0
28946.93CTSK'protein_coding'210DELoss-122.321ES CTSK0
29986.91DTNA'protein_coding'1340AELoss-5.616EU ES AB CE ENST000003991140.00
301006.89CD44'protein_coding'621AEGain9.2923EU ES AB E6a_E13a76.19
311056.80CTSL1'protein_coding'414DELoss-111.824EU ES AB CTSL10.00
321066.79FNBP1'protein_coding'525AELoss-46.616EU ES AB E4_Aa0.00
331086.74HDAC9'protein_coding'634AELoss-14.6822EU AB CE E27_Aa60.00
341136.62AKAP2'protein_coding'723DELoss-39.386EU ES AKAP260.00
351156.61CBX4'protein_coding'27AELoss-11.055EU ES E3a_E5a75.00
361206.59WDR8'protein_coding'414AELoss-11.843EU AB E7_Da0
371226.58ZNF436'protein_coding'411AELoss-10.712EU ES E1a_E3a100.00
381236.58CA9'protein_coding'111AELoss-6.272EU AB E7_Da0
391246.55FLNB'protein_coding'447AELoss-5.793EU ES E38a_E39a0.00
401256.50MAP2K3'protein_coding'520AELoss-12.014ES E10a_E14a33.33
411266.48ARSG'protein_coding'111AELoss-146.5511EU ES AB CE E8a_E9a100.00
421286.48SVIL'protein_coding'342AELoss-15.4210EU ES E4a_E5a66.67
431306.44C17orf81'protein_coding'412AEGain36.1826EU AB IR E4_Da0.00
441356.38RBM3'protein_coding'514AELoss-17.501ES E2a_E7a0
451376.38RASA1'protein_coding'226AELoss-16.3944ES AB IR CE I10_SR30
461416.32ARHGEF11'protein_coding'345AELoss-42.767EU ES E39a_E40a50.00
471436.30IFRD2'protein_coding'115AELoss-12.662ES AB E7a_E12a0
481456.29MARK3'protein_coding'321AELoss-9.847EU ES E16a_E17a100.00
491486.26SLC35A2'protein_coding'616AELoss-11.792EU AB E5_Aa0
501516.24SPAG9'protein_coding'646AELoss-33.983EU E29a_E30a100.00
511536.21RPS19'protein_coding'16AELoss-11.861ES E4a_E6a0
521546.21RP11-529I10.4'protein_coding'411AELoss-8.274EU E5a_E6a66.67
531566.20MIDN'protein_coding'210AELoss-13.352ES E3a_E5a0.00
541586.18ATXN3'protein_coding'514AEGain10.192ES AB E5_Da0
551616.15TSC22D1'protein_coding'25AELoss-13.341ES E1a_E3a0
561626.15HDAC7'protein_coding'427AELoss-6.891ES E6a_E10a0
571636.15ABLIM1'protein_coding'1540AEGain10.5518EU ES AB ER6a78.57
581666.12CNN1'protein_coding'17DELoss-69.591ES CNN10
591676.11CKB'protein_coding'18AELoss-11.202ES E3a_E7a0.00
601696.10GEM'protein_coding'26DELoss-68.392CE GEM0
611706.09RUVBL1'protein_coding'111AELoss-11.4533EU AB IR CE E6_Aa0.00
621716.09ACTL6A'protein_coding'216AELoss-10.731AB E8_Aa0
631746.07AP000350.4'protein_coding'13AELoss-12.181EU ER1a0
641766.06CLSTN1'protein_coding'319AELoss-9.005EU ES ER11a75.00
651776.05ARRDC1'protein_coding'211AELoss-4.354AB IR E7_Aa0
661806.04ERBB2'protein_coding'228AELoss-4.472EU AB E20_Aa0
671826.03DDAH2'protein_coding'311AELoss-12.993ES E4a_E6a0.00
681846.03AEBP1'protein_coding'121DELoss-65.134EU ES AEBP133.33
691866.01MTSS1L'protein_coding'217AELoss-14.191ES E11a_E13a0
701886.00PFDN1'protein_coding'14AELoss-13.153AB CE I2_AR50
711896.00ACTN4'protein_coding'121AELoss-5.861ES E18a_E20a0
721906.00SLC12A8'protein_coding'320AEGain4.8411EU AB E2_Ab66.67
731915.99CENTG2'protein_coding'524AELoss-8.795EU ES AB E2a_E3a33.33
741955.98PRPF38B'protein_coding'412AEGain9.713EU E1a_E2a100.00
751985.96AC009171.3'protein_coding'15AELoss-11.6313EU AB IR CE E2_Aa0
762015.94FOXP4'protein_coding'524AELoss-13.482EU ES E2a_E14a0.00
772035.93ARID5B'protein_coding'212AEGain10.497EU ES AB E2a_E3a40.00
782065.90SLK'protein_coding'219AEGain12.854EU ES ENST00000369755100.00
792085.89BNIP2'protein_coding'212AEGain12.871AB E4_Da0
802105.88SEC16A'protein_coding'842AELoss-9.255EU ES AB E23f_E25a33.33
812125.87ACTN1'protein_coding'224AELoss-7.932EU ES E18a_E20a0.00
822135.86SLC30A4'protein_coding'18AELoss-5.136EU AB E5a_E6a0
832145.86DOCK1'protein_coding'253AELoss-14.333EU CE I30_AR30.00
842155.85FNIP1'protein_coding'320AEGain6.667EU ES CE E6a_E7a100.00
852165.85MACF1'protein_coding'10116AELoss-11.9719EU ES CE E44a_E45a52.94
862175.85MBP'protein_coding'1329AELoss-4.682EU ES E11a_E14a100.00
872185.83HIP1R'protein_coding'236AELoss-2.949EU AB IR E3_Aa0.00
882205.82MTHFD1'protein_coding'128AELoss-9.444EU AB E23_Da0
892215.80DHRS12'protein_coding'210AEGain9.374EU AB E1_Da100.00
902225.79NXN'protein_coding'311AEGain12.241AB E1_Da0
912235.78SORBS3'protein_coding'121AELoss-21.6622EU ES ER8a100.00
922245.77FBLN5'protein_coding'314AEGain6.1415EU ES AB E10_Aa92.31
932265.76ETNK1'protein_coding'312AEGain8.674AB CE E5_Da0
942285.76LRRC23'protein_coding'310AELoss-11.0316EU AB IR CE E1_Da0.00
952295.76PAFAH1B3'protein_coding'15AELoss-9.562AB E4_Da0
962325.74AC099524.5'protein_coding'223AELoss-6.562ES E14a_E16a0.00
972335.74MEF2A'protein_coding'314AEGain10.472ES E3a_E5a0.00
982355.73RTN2'protein_coding'212AEGain10.5426EU AB IR E5a_E6a50.00
992395.70DNM2'protein_coding'526AELoss-9.103ES E14a_E18a0.00
1002425.69ZNF688'protein_coding'515AELoss-11.555CE I9_AR370
1012435.68SEMA3B'protein_coding'221AELoss-3.244EU AB ER1a100.00
1022455.66NUDT5'protein_coding'518AELoss-8.843AB E10_Da0
1032485.65CSTF3'protein_coding'121AELoss-19.153EU AB E8_Aa100.00
1042515.64ESNA1'protein_coding'522AELoss-7.3424EU ES AB E12a_E14a90.91
1052565.63MCC'protein_coding'221AEGain5.951I1_SR10
1062575.62PIGS'protein_coding'323AELoss-9.167EU ES AB E6b_E8a25.00
1072585.62CASP2'protein_coding'417AELoss-7.395EU ES E11a_E13a50.00
1082605.62EML2'protein_coding'220AELoss-5.921AB E4_Aa0
1092635.61TPM1'protein_coding'921AELoss-6.095ES IR E7a_E9a0.00
1102655.61LAT2'protein_coding'521AEGain6.157EU AB E4_Da80.00
1112665.60LHFP'protein_coding'14DELoss-48.611EU LHFP0
1122675.60LTBP1'protein_coding'851AELoss-65.4026EU ES AB E5_Ac57.89
1132685.60MAP3K7'protein_coding'521AEGain6.433EU ES E11a_E12a100.00
1142715.60SLC27A1'protein_coding'214AELoss-7.291ES E10a_E12a0
1152725.59PLAC9'protein_coding'47AELoss-53.5028EU AB IR E4a_E5a50.00
1162735.59ATG9A'protein_coding'523AELoss-8.792EU ES E1a_E5a0.00
1172775.58TAF1A'protein_coding'515AEGain6.153EU AB E7_Da0.00
1182785.56GFPT2'protein_coding'119DELoss-47.296ES AB IR GFPT20
1192805.55MKNK2'protein_coding'215AELoss-8.003EU ES E12a_E14b0.00
1202815.55ACO1'protein_coding'326AEGain4.362EU CE I21_AR40
1212835.54IFT122'protein_coding'432AEGain8.004EU AB E19_Aa0.00
1222845.54ELK4'protein_coding'26AELoss-8.212AB E3_Db0
1232855.53MYO1C'protein_coding'233AELoss-9.941ES E11a_E14a0
1242865.53APBB2'protein_coding'221AELoss-29.843EU E8a_E9a100.00
1252875.53RBM26'protein_coding'224AELoss-15.843EU E13a_E14a100.00
1262885.53MPRIP'protein_coding'629AELoss-8.374EU ES E16a_E19a50.00
1272895.51KIF1B'protein_coding'759AEGain19.1353EU ES CE E31a_E33a88.24
1282905.51VPS37B'protein_coding'14AELoss-12.212ES E2a_E4a0.00
1292925.50MTF2'protein_coding'415AELoss-7.6725EU AB IR CE I50
1302955.49C14orf103'protein_coding'242AEGain6.021AB E18_Aa0
1312965.49DPP9'protein_coding'433AELoss-8.291ES E10a_E12a0
1322975.49TIMP2'protein_coding'15DELoss-44.881EU TIMP20
1332985.49PLEKHA4'protein_coding'220AELoss-25.666ES E1a_E5a60.00
1342995.48RAB22A'protein_coding'17AEGain9.453CE I3_SR30
1353015.48CACHD1'protein_coding'330AEGain5.941AB E10_Aa0
1363035.47CTPS'protein_coding'221AELoss-7.952AB I4_SR20
1373045.47RPS6KB2'protein_coding'115AELoss-8.792ES E13a_E15a0.00
1383065.45MICA'protein_coding'519AELoss-11.212ES AB E5a_E7a0
1393085.43SLC7A5'protein_coding'110AELoss-6.291ES E2a_E5a0
1403095.43DDX10'protein_coding'118AEGain7.621CE I17_AR10
1413105.43AC127496.5'protein_coding'134AELoss-21.8217EU CE I9_AR657.14
1423115.42CREB5'protein_coding'616AELoss-43.2319EU ES AB IR E8a_E10a80.00
1433135.41HDAC1'protein_coding'214AELoss-5.8319AB IR E4_Da0
1443145.41ZBTB44'protein_coding'313AEGain8.702AB I5_SR30
1453155.41ANO1'protein_coding'428AELoss-6.423EU E16a_E17a0.00
1463165.41PPP1R12B'protein_coding'936AEGain7.9016EU ES AB E6a_E8a46.15
1473175.40NR1H2'protein_coding'214AELoss-9.471ES E4a_E6a0
1483185.40TBC1D1'protein_coding'629AELoss-6.232EU ES E19a_E22a0.00
1493195.40NEK7'protein_coding'314AELoss-11.651ES E3a_E6a0
1503215.39MAP4K4'protein_coding'535AEGain6.972ES E13a_E18a0.00
1513225.37TRAK1'protein_coding'319AELoss-9.0010EU AB CE I1_AR30.00
1523255.37GIT1'protein_coding'425AELoss-10.263ES AB E1a_E3a0.00
1533265.37EXOSC3'protein_coding'25AEGain7.652EU AB E3_Da0
1543275.37IL1R1'protein_coding'621DELoss-41.233EU ES IL1R10.00
1553285.36DMTF1'protein_coding'323AEGain10.331AB E16_Da0
1563305.36KLC2'protein_coding'524AELoss-7.731ES E11a_E13a0
1573315.36BCL3'protein_coding'211AELoss-28.002ES E6a_E8a0.00
1583335.36WDR45'protein_coding'828AELoss-6.112ES E6a_E10b100.00
1593355.35M6PRBP1'protein_coding'18AELoss-9.351ES E1a_E5a0
1603365.34FRMD4A'protein_coding'532AELoss-19.2029EU AB IR CE E15_Aa100.00
1613405.33NCOA6'protein_coding'420AELoss-9.747ES AB IR I18_AR10.00
1623415.32BAZ1A'protein_coding'329AELoss-28.553ES E1a_E3a0.00
1633425.32RRBP1'protein_coding'531AELoss-7.431ES E3e_E6a0
1643435.32MFF'protein_coding'919AEGain8.314EU ES E1a_E6a66.67
1653445.32SYTL4'protein_coding'425AELoss-19.877EU ES AB IR CE E14_Aa100.00
1663455.32KIAA1217'protein_coding'930AELoss-18.8416EU ES AB E21a_E25a64.29
1673475.31NIN'protein_coding'943AEGain8.7312EU AB CE I23_AR420.00
1683485.31SESN1'protein_coding'313AEGain9.052ES AB E6_Da0
1693495.31NFATC3'protein_coding'413AEGain8.053EU AB E12_Aa0.00
1703505.31NEU1'protein_coding'16AELoss-24.732ES E1a_E4a0.00
1713515.31AOF1'protein_coding'426AELoss-7.157EU ES AB E19_Aa20.00
1723535.31PNPLA2'protein_coding'211AELoss-7.074EU ES E2a_E7a33.33
1733545.30TMEM120B'protein_coding'112AELoss-7.4616EU AB IR I866.67
1743555.30NSF'protein_coding'223AELoss-7.743EU ES AB E11_Aa0.00
1753575.29PID1'protein_coding'511DELoss-18.803EU ES PID1100.00
1763585.29COL4A1'protein_coding'467DELoss-39.037EU ES COL4A10.00
1773605.28CSF3'protein_coding'411DELoss-38.821EU CSF30
1783615.28FBXW2'protein_coding'210AEGain10.982AB E3_Aa0
1793635.27ARHGEF7'protein_coding'833AELoss-6.588EU ES AB E1b_E7a83.33
1803645.27DOPEY1'protein_coding'345AELoss-8.1837EU ES AB IR CE I27_SR154.17
1813665.26RTN4RL2'protein_coding'24AEGain8.053AB E2_Da0
1823685.25NAB2'protein_coding'411AEGain8.993ES AB E2_Aa0
1833705.23SCAMP3'protein_coding'29AELoss-5.682ES E5a_E9a100.00
1843715.23AP001120.5'protein_coding'19AELoss-7.521EU E8a_E9a0
1853725.23AMMECR1L'protein_coding'210AELoss-18.764EU AB CE E2_Da0
1863735.22NNT'protein_coding'224AELoss-8.134EU ES AB E14a_E16a0.00
1873745.22RPS6KB1'protein_coding'322AEGain8.261ES E12b_E14a0
1883765.22UNC5B'protein_coding'217AEGain8.193ES CE I1_AR30
1893815.21FCHO2'protein_coding'226AELoss-10.631ES E17a_E19a0
1903825.20RNF114'protein_coding'16AELoss-7.611ES E1a_E3a0
1913835.20CPEB3'protein_coding'213AELoss-3.6713EU AB CE I10_SR5100.00
1923855.19WDSUB1'protein_coding'516AEGain9.284EU AB CE E4a_E5a0
1933875.18C3orf63'protein_coding'226AEGain8.327EU AB E20_Da0.00
1943895.18MAP3K14'protein_coding'222AELoss-8.873ES AB E2a_E4a0
1953915.17BCAR3'protein_coding'418AELoss-5.607EU ES AB CE ENST0000037024775.00
1963945.16AC093838.3'protein_coding'118AEGain8.822ES AB E10_Da0
1973955.15C16orf5'protein_coding'28AEGain9.2611EU AB IR CE E6_Aa0
1983985.14ATXN7L2'protein_coding'213AELoss-7.941ES E2a_E4a0
1994005.14PRMT1'protein_coding'415AELoss-8.382ES E8a_E11a0.00
2004015.14EPB41'protein_coding'1230AELoss-7.023EU ES CE E18a_E19a0.00
2014025.14EFEMP1'protein_coding'416DELoss-35.151EU EFEMP10
2024035.13NIPBL'protein_coding'147AEGain8.023ES E10a_E12a50.00
2034085.10ZNF516'protein_coding'18AEGain7.941AB E7_Da0
2044105.10CAMKK2'protein_coding'924AEGain6.915EU ES AB E15_Da66.67
2054115.10MYST3'protein_coding'319AEGain9.342EU ES E15a_E17a0.00
2064135.09HCFC1'protein_coding'332AELoss-6.796EU ES E22a_E24a60.00
2074145.09EIF4A1'protein_coding'321AELoss-9.782ES E3a_E5a0.00
2084155.09FRG1'protein_coding'19AEGain4.871AB E1_Da0
2094165.08DUSP8'protein_coding'28AELoss-17.264ES E3a_E5a33.33
2104175.08PKIG'protein_coding'814AEGain2.165EU ES AB ER1c66.67
2114185.07ACTA2'protein_coding'19DELoss-33.661ES ACTA20
2124205.07LTBP4'protein_coding'541DELoss-16.6537EU ES LTBP486.11
2134215.07NSFL1C'protein_coding'617AELoss-4.444EU ES ER4a100.00
2144225.07BACH2'protein_coding'314AEGain7.2811EU ES AB CE E8_Da33.33
2154285.05ALG12'protein_coding'212AELoss-8.441ES E3a_E5a0
2164305.04PDLIM5'protein_coding'522AELoss-4.532EU ES E5a_E7b0.00
2174315.04THUMPD3'protein_coding'212AELoss-9.3523EU ES AB IR CE I7_SR166.67
2184325.03MOCS1'protein_coding'819AELoss-6.112ES E4a_E7a100.00
2194335.03SLC35C2'protein_coding'719AEGain8.642ES AB ENST000003177340
2204345.03NGF'protein_coding'13DELoss-32.621ES NGF0
2214375.02HP1BP3'protein_coding'625AELoss-20.692EU ES E2b_E3a100.00
2224385.02MZF1'protein_coding'27AEGain9.234AB IR E2_Da0
2234395.02DNAJC11'protein_coding'421AELoss-6.651AB E15_Da0
2244405.00RP11-63L7.3'protein_coding'15AEGain8.771EU E1a_E2a0
2254415.00C3orf35'protein_coding'27AEGain6.051AB E2_Da0
2264435.00PNKP'protein_coding'117AELoss-8.952AB E7_Da0
2274444.99POMT1'protein_coding'728AELoss-7.524EU AB E17_Aa0.00
2284464.98MAD1L1'protein_coding'425AELoss-7.849EU ES CE I17_AR128.57
2294484.98TRIO'protein_coding'360AEGain17.4438EU ES CE E55a_E57a68.57
2304504.97PI4KB'protein_coding'621AELoss-8.403EU ES E8a_E10a0.00
2314524.97ACY1'protein_coding'217AELoss-4.884EU AB E3_Aa0.00
2324534.96SLC25A26'protein_coding'28AELoss-6.421ES E3a_E5a0
2334554.96WDR61'protein_coding'111AELoss-25.5049AB IR E7_Aa0
2344564.96SNIP1'protein_coding'14AELoss-9.891ES E1a_E3a0
2354584.95CDK3'protein_coding'110AEGain7.843EU AB E6_Aa0
2364604.95EXDL2'protein_coding'719AELoss-6.424EU ES AB E6_Aa0.00
2374614.95SLC2A1'protein_coding'314AELoss-8.782ES E4a_E6a0.00
2384624.95ARHGAP26'protein_coding'328AELoss-8.923EU ES I9_SR30.00
2394634.95DENND4B'protein_coding'228AELoss-7.791ES E10a_E12a0
2404644.94FAM40A'protein_coding'324AELoss-24.293ES E6a_E9a0.00
2414664.93CYP4V2'protein_coding'213AELoss-14.2711EU AB E3a_E4a66.67
2424674.93MPI'protein_coding'38AELoss-7.002CE I4_AR30
2434684.93R3HCC1'protein_coding'18AELoss-8.032EU AB E2_Aa0
2444704.93CLCC1'protein_coding'921AELoss-8.951ES E7b_E9a0
2454714.93TBP'protein_coding'313AELoss-7.191ES E1a_E3a0
2464724.92ZNF12'protein_coding'615AEGain7.643EU AB E7_Aa0
2474734.92ROCK2'protein_coding'338AEGain8.102EU ES E8a_E10a0.00
2484754.91IRAK1'protein_coding'519AELoss-6.872EU ES E11a_E13a0.00
2494764.91TGFBR3'protein_coding'221DELoss-30.012EU ES TGFBR30.00
2504774.90PDLIM1'protein_coding'17AELoss-7.221ES E3a_E5a0
2514784.90KLK5'protein_coding'28DEGain15.122EU ES KLK5100.00


Candidate Differential and Alternative Expression Genes (Gain ONLY)

The following table lists candidate genes ranked according to 'Score'. Only the top 250 genes appear in each list. For a complete list download the results file provided above. To appear in this list, a 'candidate gene' must be differentially expressed at the gene level (DE) or contain at least one alternatively expressed (AE) feature. The 'Score' is based on the fold change as well as other factors for AE events (multiple features supporting the same event, reciprocity, etc.). The 'Event Type' indicates whether the gene was differentially expressed ('DE') or alternatively expressed 'AE'. 'Direction' refers to the direction (+ve/-ve) of the fold change. 'Gain' (+ve) indicates higher expression in library A than library B and vice versa. 'FC' stands for fold change. '# AE Events' is the number of significant alternative expression events observed for each gene. 'AE Codes' refers to various alternative expression subtypes (listed above). The 'Top Feature' is the most significant AE event observed for an AE gene. 'Adjacency' refers to the number of consecutive AE features (potentially supporting the same isoform). 'Adjacency %' refers to the percent of all AE events for a gene that were adjacent to each other.


RankOverall
Rank
ScoreNameGene
Type
Trans.
Count
Exon
Count
Event
Type
DirectionFC# AE
Events
AE CodesTop FeatureAdjacency
%
179.70C1S'protein_coding'634AEGain4.661AB E4_Aa0
2457.82RP1-21O18.1'protein_coding'724AEGain12.1823EU ES AB IR CE E17_Da72.73
3497.75ELL3'protein_coding'111AEGain32.9043EU AB IR CE E5a_E6a66.67
4587.64LY75'protein_coding'443AEGain15.4775EU AB CE ER23a91.67
5647.46GSN'protein_coding'936AEGain14.217EU ES E7a_E11b100.00
6807.23S100A7'protein_coding'25AEGain11.382EU ES E1a_E3a100.00
7827.20MYH10'protein_coding'446AEGain15.8219EU AB IR E43_Aa0.00
8916.99TTBK2'protein_coding'322AEGain13.933AB E11_Da0
91006.89CD44'protein_coding'621AEGain9.2923EU ES AB E6a_E13a76.19
101306.44C17orf81'protein_coding'412AEGain36.1826EU AB IR E4_Da0.00
111586.18ATXN3'protein_coding'514AEGain10.192ES AB E5_Da0
121636.15ABLIM1'protein_coding'1540AEGain10.5518EU ES AB ER6a78.57
131906.00SLC12A8'protein_coding'320AEGain4.8411EU AB E2_Ab66.67
141955.98PRPF38B'protein_coding'412AEGain9.713EU E1a_E2a100.00
152035.93ARID5B'protein_coding'212AEGain10.497EU ES AB E2a_E3a40.00
162065.90SLK'protein_coding'219AEGain12.854EU ES ENST00000369755100.00
172085.89BNIP2'protein_coding'212AEGain12.871AB E4_Da0
182155.85FNIP1'protein_coding'320AEGain6.667EU ES CE E6a_E7a100.00
192215.80DHRS12'protein_coding'210AEGain9.374EU AB E1_Da100.00
202225.79NXN'protein_coding'311AEGain12.241AB E1_Da0
212245.77FBLN5'protein_coding'314AEGain6.1415EU ES AB E10_Aa92.31
222265.76ETNK1'protein_coding'312AEGain8.674AB CE E5_Da0
232335.74MEF2A'protein_coding'314AEGain10.472ES E3a_E5a0.00
242355.73RTN2'protein_coding'212AEGain10.5426EU AB IR E5a_E6a50.00
252565.63MCC'protein_coding'221AEGain5.951I1_SR10
262655.61LAT2'protein_coding'521AEGain6.157EU AB E4_Da80.00
272685.60MAP3K7'protein_coding'521AEGain6.433EU ES E11a_E12a100.00
282775.58TAF1A'protein_coding'515AEGain6.153EU AB E7_Da0.00
292815.55ACO1'protein_coding'326AEGain4.362EU CE I21_AR40
302835.54IFT122'protein_coding'432AEGain8.004EU AB E19_Aa0.00
312895.51KIF1B'protein_coding'759AEGain19.1353EU ES CE E31a_E33a88.24
322955.49C14orf103'protein_coding'242AEGain6.021AB E18_Aa0
332995.48RAB22A'protein_coding'17AEGain9.453CE I3_SR30
343015.48CACHD1'protein_coding'330AEGain5.941AB E10_Aa0
353095.43DDX10'protein_coding'118AEGain7.621CE I17_AR10
363145.41ZBTB44'protein_coding'313AEGain8.702AB I5_SR30
373165.41PPP1R12B'protein_coding'936AEGain7.9016EU ES AB E6a_E8a46.15
383215.39MAP4K4'protein_coding'535AEGain6.972ES E13a_E18a0.00
393265.37EXOSC3'protein_coding'25AEGain7.652EU AB E3_Da0
403285.36DMTF1'protein_coding'323AEGain10.331AB E16_Da0
413435.32MFF'protein_coding'919AEGain8.314EU ES E1a_E6a66.67
423475.31NIN'protein_coding'943AEGain8.7312EU AB CE I23_AR420.00
433485.31SESN1'protein_coding'313AEGain9.052ES AB E6_Da0
443495.31NFATC3'protein_coding'413AEGain8.053EU AB E12_Aa0.00
453615.28FBXW2'protein_coding'210AEGain10.982AB E3_Aa0
463665.26RTN4RL2'protein_coding'24AEGain8.053AB E2_Da0
473685.25NAB2'protein_coding'411AEGain8.993ES AB E2_Aa0
483745.22RPS6KB1'protein_coding'322AEGain8.261ES E12b_E14a0
493765.22UNC5B'protein_coding'217AEGain8.193ES CE I1_AR30
503855.19WDSUB1'protein_coding'516AEGain9.284EU AB CE E4a_E5a0
513875.18C3orf63'protein_coding'226AEGain8.327EU AB E20_Da0.00
523945.16AC093838.3'protein_coding'118AEGain8.822ES AB E10_Da0
533955.15C16orf5'protein_coding'28AEGain9.2611EU AB IR CE E6_Aa0
544035.13NIPBL'protein_coding'147AEGain8.023ES E10a_E12a50.00
554085.10ZNF516'protein_coding'18AEGain7.941AB E7_Da0
564105.10CAMKK2'protein_coding'924AEGain6.915EU ES AB E15_Da66.67
574115.10MYST3'protein_coding'319AEGain9.342EU ES E15a_E17a0.00
584155.09FRG1'protein_coding'19AEGain4.871AB E1_Da0
594175.08PKIG'protein_coding'814AEGain2.165EU ES AB ER1c66.67
604225.07BACH2'protein_coding'314AEGain7.2811EU ES AB CE E8_Da33.33
614235.06S100A8'protein_coding'25DEGain33.380N/AS100A8N/A
624335.03SLC35C2'protein_coding'719AEGain8.642ES AB ENST000003177340
634365.03RP11-20F24.3'unprocessed_pseudogene'16DEGain32.560N/ARP11-20F24.3N/A
644385.02MZF1'protein_coding'27AEGain9.234AB IR E2_Da0
654405.00RP11-63L7.3'protein_coding'15AEGain8.771EU E1a_E2a0
664415.00C3orf35'protein_coding'27AEGain6.051AB E2_Da0
674484.98TRIO'protein_coding'360AEGain17.4438EU ES CE E55a_E57a68.57
684584.95CDK3'protein_coding'110AEGain7.843EU AB E6_Aa0
694724.92ZNF12'protein_coding'615AEGain7.643EU AB E7_Aa0
704734.92ROCK2'protein_coding'338AEGain8.102EU ES E8a_E10a0.00
714784.90KLK5'protein_coding'28DEGain15.122EU ES KLK5100.00
724874.87FBXO38'protein_coding'325AEGain9.372EU AB E18_Aa0
734884.87SLC22A4'protein_coding'110AEGain7.9610EU ES AB CE E1_Da33.33
744934.86SEPP1'protein_coding'14AEGain4.481ES E1a_E3a0
754994.85POLDIP2'protein_coding'112AEGain21.1617AB IR E10_Da0
765094.83MAPK8'protein_coding'721AEGain17.436AB IR CE I6_AR10
775104.83STARD13'protein_coding'618AEGain5.867EU ES CE I1_AR11100.00
785154.82LRCH3'protein_coding'119AEGain6.9422ES AB IR CE I13_AR10.00
795164.82ATP6AP2'protein_coding'19AEGain6.772ES E3a_E6a100.00
805174.82DEDD'protein_coding'510AEGain5.703EU ES E1a_E4a100.00
815194.82OLFM4'protein_coding'15DEGain28.180N/AOLFM4N/A
825204.82PXDN'protein_coding'123AEGain7.273ES E3a_E5a0.00
835274.80CHST12'protein_coding'36AEGain5.851CE I1_AR60
845304.79NOL9'protein_coding'112AEGain7.131AB E7_Da0
855314.79CTBP2'protein_coding'314AEGain8.801ES E8a_E10a0
865334.78RIC8B'protein_coding'624AEGain5.533EU ES E13a_E15a50.00
875364.77NBPF9'protein_coding'1192AEGain6.202EU AB ER37d0
885484.76ITGAV'protein_coding'230AEGain5.242ES E20a_E22a0.00
895494.75S100A9'protein_coding'13DEGain26.910N/AS100A9N/A
905514.75OTUD7B'protein_coding'112AEGain6.192AB E4_Da0
915524.74AVIL'protein_coding'119AEGain6.759EU AB E4_Aa16.67
925534.73OGDH'protein_coding'123AEGain7.782AB CE E2_Da0
935564.72UNC13D'protein_coding'132AEGain6.895EU AB E32_Aa33.33
945614.70DBI'protein_coding'511AEGain6.495EU ES IR ENST0000040909450.00
955664.68PTGFRN'protein_coding'210AEGain6.872EU AB E6_Da0
965724.67MAGI3'protein_coding'426AEGain6.755EU AB E2_Da66.67
975734.67ZNF680'protein_coding'25AEGain7.441EU E1a_E2a0
985774.66SLC22A17'protein_coding'517AEGain3.962ES AB E3_Aa0
995824.64ZWILCH'protein_coding'119AEGain7.331EU E17a_E18a0
1005834.64AAK1'protein_coding'428AEGain7.826EU ES AB CE I22_AR10.00
1015854.64SIRPA'protein_coding'413AEGain6.511ES E4a_E7a0
1025914.63SLC17A5'protein_coding'212AEGain6.221ES E6a_E9a0
1035934.62YAP1'protein_coding'212AEGain7.992EU ES E5a_E9a0.00
1045954.62PYROXD1'protein_coding'112AEGain5.8213EU CE E4a_E5a63.64
1056054.59RNF2'protein_coding'29AEGain6.221ES E3a_E6a0
1066074.59RP11-189B4.2'processed_pseudogene'11DEGain24.090N/ARP11-189B4.2N/A
1076084.59PPIL3'protein_coding'719AEGain7.482EU E1b_E2c0.00
1086164.57PDZK1IP1'protein_coding'27DEGain23.800N/APDZK1IP1N/A
1096214.57C6orf61'protein_coding'416AEGain15.282EU E3a_E4a100.00
1106264.56DFNB31'protein_coding'417AEGain14.9410AB IR E9_Da0
1116324.55SPATA5L1'protein_coding'210AEGain16.3117AB IR I8_SR30
1126344.55DIDO1'protein_coding'927AEGain12.7117EU ES AB IR I7_AR116.67
1136354.54TNFSF13'protein_coding'823AEGain4.8417EU ES AB E12a_E13a86.67
1146404.53RTN4'protein_coding'1019AEGain6.751ES E11a_E13a0
1156424.53GULP1'protein_coding'930AEGain4.011EU ER2a0
1166444.53TMPRSS2'protein_coding'215DEGain12.322EU TMPRSS2100.00
1176474.52COX7A1'protein_coding'14AEGain4.543EU IR I30
1186534.51KIAA0182'protein_coding'319AEGain12.716EU ES AB E2_Ab75.00
1196544.51PVRL4'protein_coding'19DEGain12.202EU PVRL4100.00
1206664.48AC073995.6'protein_coding'15DEGain22.373EU ES AC073995.60.00
1216674.48PHLPPL'protein_coding'420AEGain6.421AB E20_Aa0
1226704.48STAG2'protein_coding'1047AEGain4.714EU ES AB E4a_E7a100.00
1236734.48ANKRD30A'protein_coding'343DEGain22.280N/AANKRD30AN/A
1246744.47DNAJC17'protein_coding'111AEGain16.755AB IR I10_AR10
1256754.47WDR91'protein_coding'331AEGain6.921AB E8_Da0
1266764.47TOP3A'protein_coding'119AEGain6.5819EU ES AB IR E8_Aa0.00
1276824.46AHSA2'protein_coding'723AEGain6.864EU AB IR E10_Aa0
1286854.45KLK7'protein_coding'39DEGain21.841ES KLK70
1296874.45TFF1'protein_coding'13DEGain21.820N/ATFF1N/A
1306894.43KIF13A'protein_coding'849AEGain4.745EU ES E39a_E40a75.00
1316924.42POLR2F'protein_coding'412AEGain7.061CE I5_AR50
1326974.42LEO1'protein_coding'214AEGain6.211AB E10_Da0
1337034.41AQR'protein_coding'135AEGain6.401ES E9a_E11a0
1347084.40CLCA4'protein_coding'217DEGain21.180N/ACLCA4N/A
1357164.40C10orf78'protein_coding'46AEGain6.631ES E2b_E4a0
1367214.39IQCC'protein_coding'15AEGain5.901AB E4_Aa0
1377224.395S_rRNA'rRNA'11DEGain20.920N/A5S_rRNAN/A
1387244.38C11orf49'protein_coding'413AEGain5.825EU AB CE E6_Aa0
1397254.38PIP5K2B'protein_coding'211AEGain11.622EU E6a_E7a0.00
1407314.37TFCP2L1'protein_coding'115DEGain20.670N/ATFCP2L1N/A
1417364.36KIAA0020'protein_coding'320AEGain7.291ES E9a_E11a0
1427384.36FBXL18'protein_coding'414AEGain12.565EU AB ENST00000297035100.00
1437464.34MBD2'protein_coding'28AEGain10.992EU E2a_E3a100.00
1447504.34MTHFD2L'protein_coding'413AEGain16.7529EU AB IR CE I2_SR4100.00
1457534.33KRR1'protein_coding'110AEGain5.4235ES AB IR I7_SR10
1467554.33MUCL1'protein_coding'14DEGain20.110N/AMUCL1N/A
1477564.33GIGYF2'protein_coding'742AEGain6.593EU ES E3a_E4a0.00
1487614.32TAOK2'protein_coding'220AEGain6.612AB E8_Da0
1497624.32LPAR2'protein_coding'26DEGain10.962EU LPAR2100.00
1507654.31LPCAT4'protein_coding'114AEGain8.432EU ES E10a_E12a100.00
1517744.30KLK6'protein_coding'49DEGain19.690N/AKLK6N/A
1527774.29AGR2'protein_coding'210DEGain19.570N/AAGR2N/A
1537794.29LRP5L'protein_coding'312AEGain6.211AB E5_Ab0
1547824.28ISGF3G'protein_coding'223AEGain5.827AB IR E16_Aa0
1557834.27RIPK4'protein_coding'314DEGain10.706EU AB RIPK4100.00
1567854.27CDKN1B'protein_coding'25AEGain4.461AB E2_Da0
1577874.27MLL'protein_coding'646AEGain5.502EU ES E1a_E7a100.00
1587884.26EIF3EIP'protein_coding'316AEGain6.231ES E2a_E7a0
1597954.26AGR3'protein_coding'210DEGain19.130N/AAGR3N/A
1608094.23ELF2'protein_coding'514AEGain4.234EU ES AB ENST0000035863550.00
1618124.23NOM1'protein_coding'111AEGain6.951AB E9_Aa0
1628134.23CYB5R2'protein_coding'211AEGain2.776EU ES IR ER1b33.33
1638194.22ALDH3A2'protein_coding'417AEGain4.542EU AB E1_Da0
1648204.22CLN5'protein_coding'27AEGain5.682CE I2_AR20
1658224.22NGFR'protein_coding'16AEGain4.621AB E4_Da0
1668274.21NCCRP1'protein_coding'16DEGain18.460N/ANCCRP1N/A
1678354.19ARTS-1'protein_coding'120AEGain3.5722EU AB IR E11_Aa100.00
1688524.16PIGR'protein_coding'111DEGain17.821ES PIGR0
1698544.15AC093602.5'pseudogene'12AEGain6.743EU AB E1a_E2a0
1708574.15GRINL1A'protein_coding'1127AEGain12.5436EU ES AB CE ER1b92.59
1718594.15PRDM2'protein_coding'922AEGain5.443EU CE ENST000003431370.00
1728604.15TFIP11'protein_coding'523AEGain10.015IR I12_AR20
1738614.15CALB2'protein_coding'311DEGain17.720N/ACALB2N/A
1748654.14SUOX'protein_coding'48AEGain10.292AB E3_Aa0
1758664.14APOL1'protein_coding'39AEGain2.371AB E2_Aa0
1768684.13BATF'protein_coding'13DEGain17.560N/ABATFN/A
1778704.13CAMTA2'protein_coding'423AEGain2.7612EU AB IR E19_Da57.14
1788724.13NFATC2'protein_coding'315AEGain12.905EU ES AB CE E1a_E2a50.00
1798734.13CBWD1'protein_coding'827AEGain6.312EU AB E4_Dd0
1808744.13MXD4'protein_coding'16AEGain6.442EU AB E4_Aa0
1818764.13PLEKHM1'protein_coding'112AEGain5.093ES AB E5_Da0.00
1828844.11CEACAM1'protein_coding'1326DEGain17.220N/ACEACAM1N/A
1838854.10EEF1A2'protein_coding'29DEGain17.200N/AEEF1A2N/A
1848864.10METTL1'protein_coding'38AEGain5.605AB CE I2_SR10
1858904.10KRTAP21-1'protein_coding'11DEGain17.130N/AKRTAP21-1N/A
1868914.10ABR'protein_coding'327AEGain5.313EU ES ENST0000029110750.00
1878934.09IGFL1'protein_coding'14DEGain17.030N/AIGFL1N/A
1888944.09LIMA1'protein_coding'212AEGain3.739EU ES AB ER1a85.71
1898974.09AC109333.28'protein_coding'13AEGain10.241AB E2_Aa0
1909064.08ENAH'protein_coding'621AEGain10.445EU ES E12a_E13a75.00
1919144.06ZNF302'protein_coding'15AEGain11.271AB E2_Aa0
1929174.06AC108134.3'protein_coding'18AEGain5.423AB E4_Aa0
1939184.06GNA11'protein_coding'17AEGain12.881CE I4_AR30
1949294.04TRIM3'protein_coding'420AEGain5.792EU AB E13_Aa0
1959314.04CASP14'protein_coding'16DEGain16.470N/ACASP14N/A
1969324.04SMC4'protein_coding'429AEGain3.971AB E3_Aa0
1979354.04RELA'protein_coding'317AEGain5.121ES E6a_E12a0
1989414.02XRRA1'protein_coding'423AEGain5.326EU AB IR E18_Aa0
1999424.02SERINC2'protein_coding'212DEGain16.220N/ASERINC2N/A
2009444.02ZNF548'protein_coding'24AEGain6.051AB E4_Aa0
2019514.01LCN2'protein_coding'415DEGain16.110N/ALCN2N/A
2029524.01AZGP1'protein_coding'14DEGain16.110N/AAZGP1N/A
2039544.01SCGB1D2'protein_coding'13DEGain16.100N/ASCGB1D2N/A
2049594.00PIP'protein_coding'14DEGain16.050N/APIPN/A
2059693.98C17orf85'protein_coding'214AEGain4.483EU AB E8_Aa0
2069713.98SLC6A6'protein_coding'115AEGain5.254AB CE I9_AR40
2079723.98TRNT1'protein_coding'413AEGain5.154EU AB CE E4_Aa0
2089733.98ZNF584'protein_coding'39AEGain3.253EU ES CE I5_AR40.00
2099773.98SLC6A14'protein_coding'114DEGain15.771EU SLC6A140
2109793.98C22orf36'protein_coding'26AEGain5.941AB E3_Aa0
2119803.98DNAJB14'protein_coding'210AEGain9.561CE I2_AR50
2129833.97PI3'protein_coding'13DEGain15.670N/API3N/A
2139863.97MUTYH'protein_coding'926AEGain6.047EU ES AB E7_Da50.00
2149953.96NUMB'protein_coding'410AEGain3.793EU ER9a100.00
21510023.94TPCN2'protein_coding'225AEGain9.693EU E17a_E18a0.00
21610033.94DENND4A'protein_coding'132AEGain4.586EU ES AB CE E7_Da0.00
21710063.94C5orf5'protein_coding'123AEGain5.262EU AB E7_Da0
21810123.93LARGE'protein_coding'420AEGain4.146CE I3_AR260
21910153.93SLC5A1'protein_coding'115DEGain15.190N/ASLC5A1N/A
22010203.92BBOX1'protein_coding'19DEGain15.130N/ABBOX1N/A
22110243.92PKP3'protein_coding'113DEGain15.100N/APKP3N/A
22210323.91DPY19L4'protein_coding'322AEGain6.852EU ER13a0.00
22310393.90AC004510.1'protein_coding'13DEGain14.900N/AAC004510.1N/A
22410423.89TMPRSS13'protein_coding'213DEGain14.850N/ATMPRSS13N/A
22510443.89AC091742.5'protein_coding'113DEGain14.830N/AAC091742.5N/A
22610473.89CTSS'protein_coding'18AEGain4.371AB E5_Da0
22710493.88WDR7'protein_coding'330AEGain4.443EU E5a_E6a0.00
22810523.88CYP24A1'protein_coding'314DEGain14.750N/ACYP24A1N/A
22910533.88MYO5B'protein_coding'341DEGain14.731ES MYO5B0
23010543.88ANAPC2'protein_coding'113AEGain10.631AB E13_Aa0
23110563.88SOCS5'protein_coding'23AEGain4.671ES E1a_E3a0
23210583.87MUC16'protein_coding'423DEGain14.660N/AMUC16N/A
23310593.87ABCB6'protein_coding'221AEGain5.911AB E18_Aa0
23410643.87CST6'protein_coding'13DEGain14.630N/ACST6N/A
23510663.87ELOVL7'protein_coding'17AEGain11.867AB IR E2_Da0
23610683.87NUP85'protein_coding'119AEGain9.3416EU AB IR E18_Da0
23710723.87PLEK2'protein_coding'19DEGain14.580N/APLEK2N/A
23810753.86TGFA'protein_coding'27DEGain14.561ES TGFA0
23910763.86TGM2'protein_coding'213AEGain8.772EU AB E10_Da0
24010783.86RNF220'protein_coding'523AEGain14.771AB E9_Da0
24110793.86B3GNT3'protein_coding'13DEGain14.520N/AB3GNT3N/A
24210813.86INTS6'protein_coding'220AEGain4.342ES E4a_E6a0.00
24310833.86GABPB1'protein_coding'413AEGain4.521AB E1_Da0
24410863.86CHD1L'protein_coding'437AEGain4.396EU AB E3_Ac50.00
24510873.85RP1-313I6.7'pseudogene'11DEGain14.470N/ARP1-313I6.7N/A
24610893.85UTP20'protein_coding'162AEGain16.5629EU AB IR E5a_E6a12.50
24710973.85CTNS'protein_coding'317AEGain5.7311EU AB IR E11_Aa0
24811003.84GCNT2'protein_coding'614DEGain14.340N/AGCNT2N/A
24911023.84ATP9A'protein_coding'331AEGain10.352EU AB E4_Da0
25011093.83PCMTD1'protein_coding'15AEGain4.499IR I1_AR20
25111113.83SLC34A2'protein_coding'113DEGain14.240N/ASLC34A2N/A


Candidate Differential and Alternative Expression Genes (Loss ONLY)

The following table lists candidate genes ranked according to 'Score'. Only the top 250 genes appear in each list. For a complete list download the results file provided above. To appear in this list, a 'candidate gene' must be differentially expressed at the gene level (DE) or contain at least one alternatively expressed (AE) feature. The 'Score' is based on the fold change as well as other factors for AE events (multiple features supporting the same event, reciprocity, etc.). The 'Event Type' indicates whether the gene was differentially expressed ('DE') or alternatively expressed 'AE'. 'Direction' refers to the direction (+ve/-ve) of the fold change. 'Gain' (+ve) indicates higher expression in library A than library B and vice versa. 'FC' stands for fold change. '# AE Events' is the number of significant alternative expression events observed for each gene. 'AE Codes' refers to various alternative expression subtypes (listed above). The 'Top Feature' is the most significant AE event observed for an AE gene. 'Adjacency' refers to the number of consecutive AE features (potentially supporting the same isoform). 'Adjacency %' refers to the percent of all AE events for a gene that were adjacent to each other.


RankOverall
Rank
ScoreNameGene
Type
Trans.
Count
Exon
Count
Event
Type
DirectionFC# AE
Events
AE CodesTop FeatureAdjacency
%
1112.00MTUS1'protein_coding'619AELoss-78.9713EU ES E9a_E10a83.33
2211.47DCN'protein_coding'610DELoss-2839.940N/ADCNN/A
3311.07MMP2'protein_coding'113DELoss-2147.360N/AMMP2N/A
4410.72LUM'protein_coding'13DELoss-1684.660N/ALUMN/A
5510.36MAP7D1'protein_coding'629AELoss-75.877EU ES E5a_E10a33.33
669.90SFRP4'protein_coding'16DELoss-955.530N/ASFRP4N/A
789.70C13orf33'protein_coding'15DELoss-829.240N/AC13orf33N/A
899.53FAM180A'protein_coding'14DELoss-739.680N/AFAM180AN/A
9109.34BDKRB1'protein_coding'13DELoss-650.090N/ABDKRB1N/A
10118.90PRRX1'protein_coding'25DELoss-478.040N/APRRX1N/A
11128.89MSC'protein_coding'12DELoss-474.960N/AMSCN/A
12138.89OGN'protein_coding'210DELoss-472.970N/AOGNN/A
13148.83FGF7'protein_coding'14DELoss-455.380N/AFGF7N/A
14158.83BRE'protein_coding'721AELoss-122.5411EU AB CE I1_AR180.00
15168.82LRRFIP1'protein_coding'632AELoss-24.387EU ES E20a_E23a66.67
16178.68THBS2'protein_coding'224DELoss-409.050N/ATHBS2N/A
17188.67SFRP2'protein_coding'13DELoss-408.390N/ASFRP2N/A
18198.59FBLN1'protein_coding'627DELoss-385.440N/AFBLN1N/A
19208.56COL1A2'protein_coding'254DELoss-376.350N/ACOL1A2N/A
20218.51TAC1'protein_coding'37DELoss-363.430N/ATAC1N/A
21228.49MFAP4'protein_coding'28DELoss-358.460N/AMFAP4N/A
22238.40SPTBN1'protein_coding'338AELoss-25.475EU ES ER2a100.00
23248.40CLIC2'protein_coding'27DELoss-336.800N/ACLIC2N/A
24258.34SERPINF1'protein_coding'18DELoss-324.230N/ASERPINF1N/A
25268.33CFD'protein_coding'15DELoss-321.120N/ACFDN/A
26278.30TWIST1'protein_coding'25DELoss-315.860N/ATWIST1N/A
27288.27DPT'protein_coding'14DELoss-309.020N/ADPTN/A
28298.26ABI3BP'protein_coding'567DELoss-306.020N/AABI3BPN/A
29308.18TCEAL7'protein_coding'26DELoss-289.250N/ATCEAL7N/A
30318.13AL117190.6'protein_coding'18DELoss-279.340N/AAL117190.6N/A
31328.09PTPRE'protein_coding'222AELoss-48.1811EU ES CE E4a_E6a83.33
32338.03FST'protein_coding'28DELoss-260.630N/AFSTN/A
33347.97AL117190.6'protein_coding'16DELoss-249.950N/AAL117190.6N/A
34357.94ZEB2'protein_coding'520DELoss-246.270N/AZEB2N/A
35367.93APOD'protein_coding'15DELoss-244.690N/AAPODN/A
36377.93CXCL14'protein_coding'14DELoss-243.720N/ACXCL14N/A
37387.93SLC2A3'protein_coding'212DELoss-243.230N/ASLC2A3N/A
38397.92TEP1'protein_coding'257AELoss-11.699EU ES AB E25_Da28.57
39407.92COL3A1'protein_coding'254DELoss-242.690N/ACOL3A1N/A
40417.89CFH'protein_coding'425DELoss-237.450N/ACFHN/A
41427.85CHRDL1'protein_coding'419DELoss-230.820N/ACHRDL1N/A
42437.83TMUB1'protein_coding'25AELoss-38.714EU ES E2a_E3a100.00
43447.82BGN'protein_coding'211DELoss-226.100N/ABGNN/A
44467.81PRPF40B'protein_coding'431AELoss-28.7335EU AB IR CE I16_SR175.00
45477.79CDK2AP1'protein_coding'14AELoss-30.101AB E4_Aa0
46487.76AKR1C1'protein_coding'211DELoss-216.472EU AKR1C10.00
47507.73GPC3'protein_coding'311DELoss-212.770N/AGPC3N/A
48517.72AC087521.10'protein_coding'11DELoss-210.900N/AAC087521.10N/A
49527.71VCAM1'protein_coding'414DELoss-208.980N/AVCAM1N/A
50537.70ALDH1A1'protein_coding'216DELoss-207.270N/AALDH1A1N/A
51547.69MMP3'protein_coding'110DELoss-206.730N/AMMP3N/A
52557.66TFDP2'protein_coding'418AELoss-20.337AB CE E5_Da0
53567.65COL1A1'protein_coding'151AELoss-524.264EU AB CE E1a_E2a100.00
54577.64CDH11'protein_coding'317DELoss-200.100N/ACDH11N/A
55597.57TNFRSF4'protein_coding'28DELoss-189.930N/ATNFRSF4N/A
56607.53MMP10'protein_coding'110DELoss-184.650N/AMMP10N/A
57617.50EDNRB'protein_coding'29DELoss-181.280N/AEDNRBN/A
58627.48FBXL10'protein_coding'530AELoss-31.059EU AB E8_Aa50.00
59637.47WNT2'protein_coding'15DELoss-177.220N/AWNT2N/A
60657.46CALD1'protein_coding'417AELoss-23.093EU ES E4a_E5a0.00
61667.42MMP19'protein_coding'312DELoss-170.790N/AMMP19N/A
62677.42FN1'protein_coding'1050DELoss-170.790N/AFN1N/A
63687.40GPNMB'protein_coding'314DELoss-168.550N/AGPNMBN/A
64697.37AL117190.6'protein_coding'14DELoss-165.940N/AAL117190.6N/A
65707.37PBRM1'protein_coding'940AELoss-35.9426EU ES AB IR CE E27a_E30a75.00
66717.37F2RL2'protein_coding'12DELoss-165.550N/AF2RL2N/A
67727.36C21orf63'protein_coding'415AELoss-18.705AB CE I7_AR70
68737.35ORMDL2'protein_coding'14AELoss-16.3010AB IR CE I3_SR20
69747.32IGFBP6'protein_coding'14DELoss-160.180N/AIGFBP6N/A
70757.32COL5A3'protein_coding'167DELoss-159.510N/ACOL5A3N/A
71767.31NID1'protein_coding'220DELoss-158.420N/ANID1N/A
72777.30COL6A3'protein_coding'850DELoss-157.820N/ACOL6A3N/A
73787.26TIMP3'protein_coding'28DELoss-153.330N/ATIMP3N/A
74797.24PTGDS'protein_coding'310DELoss-150.700N/APTGDSN/A
75817.21MTCH1'protein_coding'521AELoss-58.523ES E10a_E12a0.00
76837.19HGF'protein_coding'321DELoss-146.470N/AHGFN/A
77847.19GPR133'protein_coding'327DELoss-146.340N/AGPR133N/A
78857.19SRPX'protein_coding'211DELoss-145.670N/ASRPXN/A
79867.11COL14A1'protein_coding'349DELoss-137.850N/ACOL14A1N/A
80877.09PDGFRB'protein_coding'123DELoss-136.000N/APDGFRBN/A
81887.04GREM1'protein_coding'24DELoss-131.480N/AGREM1N/A
82897.03CXCL12'protein_coding'610DELoss-131.010N/ACXCL12N/A
83907.02C11orf53'protein_coding'25DELoss-129.370N/AC11orf53N/A
84926.97IL6'protein_coding'616DELoss-125.530N/AIL6N/A
85936.94PAPPA'protein_coding'122DELoss-123.180N/APAPPAN/A
86946.93CTSK'protein_coding'210DELoss-122.321ES CTSK0
87956.93HSPB6'protein_coding'13DELoss-121.610N/AHSPB6N/A
88966.93CCND2'protein_coding'15DELoss-121.580N/ACCND2N/A
89976.92RCN3'protein_coding'17DELoss-121.200N/ARCN3N/A
90986.91DTNA'protein_coding'1340AELoss-5.616EU ES AB CE ENST000003991140.00
91996.90CXCR7'protein_coding'12DELoss-119.270N/ACXCR7N/A
921016.88SERPINE1'protein_coding'19DELoss-117.730N/ASERPINE1N/A
931026.84PENK'protein_coding'12DELoss-114.660N/APENKN/A
941036.83RSPO3'protein_coding'27DELoss-114.110N/ARSPO3N/A
951046.83FBLN2'protein_coding'320DELoss-113.470N/AFBLN2N/A
961056.80CTSL1'protein_coding'414DELoss-111.824EU ES AB CTSL10.00
971066.79FNBP1'protein_coding'525AELoss-46.616EU ES AB E4_Aa0.00
981076.77DLK1'protein_coding'39DELoss-109.200N/ADLK1N/A
991086.74HDAC9'protein_coding'634AELoss-14.6822EU AB CE E27_Aa60.00
1001096.70SOD3'protein_coding'12DELoss-104.240N/ASOD3N/A
1011106.68PDPN'protein_coding'411DELoss-102.420N/APDPNN/A
1021116.64PODN'protein_coding'317DELoss-99.730N/APODNN/A
1031126.63C12orf50'protein_coding'216DELoss-99.130N/AC12orf50N/A
1041136.62AKAP2'protein_coding'723DELoss-39.386EU ES AKAP260.00
1051146.62ASPN'protein_coding'311DELoss-98.130N/AASPNN/A
1061156.61CBX4'protein_coding'27AELoss-11.055EU ES E3a_E5a75.00
1071166.60IGFBP7'protein_coding'15DELoss-97.160N/AIGFBP7N/A
1081176.60JAM3'protein_coding'19DELoss-97.120N/AJAM3N/A
1091186.60BASP1'protein_coding'12DELoss-96.740N/ABASP1N/A
1101196.60ALDH1A2'protein_coding'213DELoss-96.670N/AALDH1A2N/A
1111206.59WDR8'protein_coding'414AELoss-11.843EU AB E7_Da0
1121216.59HTRA1'protein_coding'19DELoss-96.410N/AHTRA1N/A
1131226.58ZNF436'protein_coding'411AELoss-10.712EU ES E1a_E3a100.00
1141236.58CA9'protein_coding'111AELoss-6.272EU AB E7_Da0
1151246.55FLNB'protein_coding'447AELoss-5.793EU ES E38a_E39a0.00
1161256.50MAP2K3'protein_coding'520AELoss-12.014ES E10a_E14a33.33
1171266.48ARSG'protein_coding'111AELoss-146.5511EU ES AB CE E8a_E9a100.00
1181276.48OLFML3'protein_coding'38DELoss-89.540N/AOLFML3N/A
1191286.48SVIL'protein_coding'342AELoss-15.4210EU ES E4a_E5a66.67
1201296.47RARRES2'protein_coding'16DELoss-88.910N/ARARRES2N/A
1211316.42FHL1'protein_coding'714DELoss-85.780N/AFHL1N/A
1221326.42CLIP3'protein_coding'114DELoss-85.430N/ACLIP3N/A
1231336.40CPNE8'protein_coding'221DELoss-84.610N/ACPNE8N/A
1241346.39COL5A2'protein_coding'154DELoss-83.830N/ACOL5A2N/A
1251356.38RBM3'protein_coding'514AELoss-17.501ES E2a_E7a0
1261366.38IGF2'protein_coding'817DELoss-83.250N/AIGF2N/A
1271376.38RASA1'protein_coding'226AELoss-16.3944ES AB IR CE I10_SR30
1281386.37NRP1'protein_coding'1231DELoss-82.940N/ANRP1N/A
1291396.36DCAMKL1'protein_coding'521DELoss-82.180N/ADCAMKL1N/A
1301406.33ADAM33'protein_coding'733DELoss-80.700N/AADAM33N/A
1311416.32ARHGEF11'protein_coding'345AELoss-42.767EU ES E39a_E40a50.00
1321426.31PTGS2'protein_coding'110DELoss-79.550N/APTGS2N/A
1331436.30IFRD2'protein_coding'115AELoss-12.662ES AB E7a_E12a0
1341446.29BHLHE22'protein_coding'11DELoss-78.470N/ABHLHE22N/A
1351456.29MARK3'protein_coding'321AELoss-9.847EU ES E16a_E17a100.00
1361466.28LRRC32'protein_coding'36DELoss-77.640N/ALRRC32N/A
1371476.27PCOLCE'protein_coding'19DELoss-77.050N/APCOLCEN/A
1381486.26SLC35A2'protein_coding'616AELoss-11.792EU AB E5_Aa0
1391496.25ADAMTS2'protein_coding'325DELoss-76.290N/AADAMTS2N/A
1401506.24ZFPM2'protein_coding'314DELoss-75.710N/AZFPM2N/A
1411516.24SPAG9'protein_coding'646AELoss-33.983EU E29a_E30a100.00
1421526.23PI16'protein_coding'17DELoss-74.880N/API16N/A
1431536.21RPS19'protein_coding'16AELoss-11.861ES E4a_E6a0
1441546.21RP11-529I10.4'protein_coding'411AELoss-8.274EU E5a_E6a66.67
1451556.20ENPEP'protein_coding'120DELoss-73.600N/AENPEPN/A
1461566.20MIDN'protein_coding'210AELoss-13.352ES E3a_E5a0.00
1471576.19FMOD'protein_coding'13DELoss-72.870N/AFMODN/A
1481596.17SLIT3'protein_coding'237DELoss-72.020N/ASLIT3N/A
1491606.17CACNA1G'protein_coding'642DELoss-71.880N/ACACNA1GN/A
1501616.15TSC22D1'protein_coding'25AELoss-13.341ES E1a_E3a0
1511626.15HDAC7'protein_coding'427AELoss-6.891ES E6a_E10a0
1521646.14KIRREL'protein_coding'520DELoss-70.660N/AKIRRELN/A
1531656.13OMD'protein_coding'13DELoss-70.030N/AOMDN/A
1541666.12CNN1'protein_coding'17DELoss-69.591ES CNN10
1551676.11CKB'protein_coding'18AELoss-11.202ES E3a_E7a0.00
1561686.10FXYD6'protein_coding'18DELoss-68.690N/AFXYD6N/A
1571696.10GEM'protein_coding'26DELoss-68.392CE GEM0
1581706.09RUVBL1'protein_coding'111AELoss-11.4533EU AB IR CE E6_Aa0.00
1591716.09ACTL6A'protein_coding'216AELoss-10.731AB E8_Aa0
1601726.08LRP1'protein_coding'392DELoss-67.520N/ALRP1N/A
1611736.07ANGPTL2'protein_coding'26DELoss-67.100N/AANGPTL2N/A
1621746.07AP000350.4'protein_coding'13AELoss-12.181EU ER1a0
1631756.06SERPING1'protein_coding'617DELoss-66.870N/ASERPING1N/A
1641766.06CLSTN1'protein_coding'319AELoss-9.005EU ES ER11a75.00
1651776.05ARRDC1'protein_coding'211AELoss-4.354AB IR E7_Aa0
1661786.04CSPG2'protein_coding'415DELoss-66.020N/ACSPG2N/A
1671796.04COL15A1'protein_coding'142DELoss-65.790N/ACOL15A1N/A
1681806.04ERBB2'protein_coding'228AELoss-4.472EU AB E20_Aa0
1691816.03CAPN6'protein_coding'113DELoss-65.410N/ACAPN6N/A
1701826.03DDAH2'protein_coding'311AELoss-12.993ES E4a_E6a0.00
1711836.03ADAMTS12'protein_coding'124DELoss-65.320N/AADAMTS12N/A
1721846.03AEBP1'protein_coding'121DELoss-65.134EU ES AEBP133.33
1731856.02EGFLAM'protein_coding'629DELoss-64.880N/AEGFLAMN/A
1741866.01MTSS1L'protein_coding'217AELoss-14.191ES E11a_E13a0
1751876.01MXRA8'protein_coding'314DELoss-64.310N/AMXRA8N/A
1761886.00PFDN1'protein_coding'14AELoss-13.153AB CE I2_AR50
1771896.00ACTN4'protein_coding'121AELoss-5.861ES E18a_E20a0
1781915.99CENTG2'protein_coding'524AELoss-8.795EU ES AB E2a_E3a33.33
1791925.99ECM2'protein_coding'314DELoss-63.600N/AECM2N/A
1801935.99CLEC3B'protein_coding'13DELoss-63.410N/ACLEC3BN/A
1811945.99FXYD1'protein_coding'18DELoss-63.400N/AFXYD1N/A
1821965.98AP000926.6'protein_coding'28DELoss-63.020N/AAP000926.6N/A
1831975.97MAB21L1'protein_coding'11DELoss-62.770N/AMAB21L1N/A
1841985.96AC009171.3'protein_coding'15AELoss-11.6313EU AB IR CE E2_Aa0
1851995.96BICC1'protein_coding'223DELoss-62.110N/ABICC1N/A
1862005.94FLRT2'protein_coding'12DELoss-61.400N/AFLRT2N/A
1872015.94FOXP4'protein_coding'524AELoss-13.482EU ES E2a_E14a0.00
1882025.94ENPP2'protein_coding'226DELoss-61.260N/AENPP2N/A
1892045.93FBXL7'protein_coding'13DELoss-60.760N/AFBXL7N/A
1902055.91POSTN'protein_coding'524DELoss-59.970N/APOSTNN/A
1912075.90LAMA4'protein_coding'647DELoss-59.530N/ALAMA4N/A
1922095.88AC090625.5'protein_coding'314DELoss-59.060N/AAC090625.5N/A
1932105.88SEC16A'protein_coding'842AELoss-9.255EU ES AB E23f_E25a33.33
1942115.87FYN'protein_coding'721DELoss-58.320N/AFYNN/A
1952125.87ACTN1'protein_coding'224AELoss-7.932EU ES E18a_E20a0.00
1962135.86SLC30A4'protein_coding'18AELoss-5.136EU AB E5a_E6a0
1972145.86DOCK1'protein_coding'253AELoss-14.333EU CE I30_AR30.00
1982165.85MACF1'protein_coding'10116AELoss-11.9719EU ES CE E44a_E45a52.94
1992175.85MBP'protein_coding'1329AELoss-4.682EU ES E11a_E14a100.00
2002185.83HIP1R'protein_coding'236AELoss-2.949EU AB IR E3_Aa0.00
2012195.83MRGPRF'protein_coding'25DELoss-57.060N/AMRGPRFN/A
2022205.82MTHFD1'protein_coding'128AELoss-9.444EU AB E23_Da0
2032235.78SORBS3'protein_coding'121AELoss-21.6622EU ES ER8a100.00
2042255.77CCL3'protein_coding'13DELoss-54.600N/ACCL3N/A
2052275.76PCDH18'protein_coding'26DELoss-54.170N/APCDH18N/A
2062285.76LRRC23'protein_coding'310AELoss-11.0316EU AB IR CE E1_Da0.00
2072295.76PAFAH1B3'protein_coding'15AELoss-9.562AB E4_Da0
2082305.76ANK2'protein_coding'553DELoss-54.060N/AANK2N/A
2092315.75NR0B1'protein_coding'24DELoss-53.790N/ANR0B1N/A
2102325.74AC099524.5'protein_coding'223AELoss-6.562ES E14a_E16a0.00
2112345.74WISP2'protein_coding'411DELoss-53.420N/AWISP2N/A
2122365.72LPAR1'protein_coding'39DELoss-52.860N/ALPAR1N/A
2132375.71IL33'protein_coding'17DELoss-52.460N/AIL33N/A
2142385.71MMP1'protein_coding'110DELoss-52.420N/AMMP1N/A
2152395.70DNM2'protein_coding'526AELoss-9.103ES E14a_E18a0.00
2162405.70AGTR1'protein_coding'55DELoss-52.130N/AAGTR1N/A
2172415.69AP002448.3'protein_coding'15DELoss-51.690N/AAP002448.3N/A
2182425.69ZNF688'protein_coding'515AELoss-11.555CE I9_AR370
2192435.68SEMA3B'protein_coding'221AELoss-3.244EU AB ER1a100.00
2202445.67C10orf72'protein_coding'29DELoss-51.060N/AC10orf72N/A
2212455.66NUDT5'protein_coding'518AELoss-8.843AB E10_Da0
2222465.66TCEAL5'protein_coding'13DELoss-50.540N/ATCEAL5N/A
2232475.65EBF1'protein_coding'322DELoss-50.370N/AEBF1N/A
2242485.65CSTF3'protein_coding'121AELoss-19.153EU AB E8_Aa100.00
2252495.64IGF1'protein_coding'513DELoss-49.830N/AIGF1N/A
2262505.64ADH1B'protein_coding'211DELoss-49.810N/AADH1BN/A
2272515.64ESNA1'protein_coding'522AELoss-7.3424EU ES AB E12a_E14a90.91
2282525.64TNFAIP6'protein_coding'16DELoss-49.750N/ATNFAIP6N/A
2292535.64CLEC2B'protein_coding'15DELoss-49.710N/ACLEC2BN/A
2302545.63ZEB1'protein_coding'310DELoss-49.690N/AZEB1N/A
2312555.63RBMS3'protein_coding'418DELoss-49.520N/ARBMS3N/A
2322575.62PIGS'protein_coding'323AELoss-9.167EU ES AB E6b_E8a25.00
2332585.62CASP2'protein_coding'417AELoss-7.395EU ES E11a_E13a50.00
2342595.62C7orf58'protein_coding'224DELoss-49.220N/AC7orf58N/A
2352605.62EML2'protein_coding'220AELoss-5.921AB E4_Aa0
2362615.62EMILIN1'protein_coding'18DELoss-49.080N/AEMILIN1N/A
2372625.61MRC2'protein_coding'130DELoss-48.990N/AMRC2N/A
2382635.61TPM1'protein_coding'921AELoss-6.095ES IR E7a_E9a0.00
2392645.61SPARCL1'protein_coding'111DELoss-48.870N/ASPARCL1N/A
2402665.60LHFP'protein_coding'14DELoss-48.611EU LHFP0
2412675.60LTBP1'protein_coding'851AELoss-65.4026EU ES AB E5_Ac57.89
2422695.60THY1'protein_coding'14DELoss-48.470N/ATHY1N/A
2432705.60FGF10'protein_coding'13DELoss-48.400N/AFGF10N/A
2442715.60SLC27A1'protein_coding'214AELoss-7.291ES E10a_E12a0
2452725.59PLAC9'protein_coding'47AELoss-53.5028EU AB IR E4a_E5a50.00
2462735.59ATG9A'protein_coding'523AELoss-8.792EU ES E1a_E5a0.00
2472745.59CTHRC1'protein_coding'27DELoss-48.090N/ACTHRC1N/A
2482755.59SMOC2'protein_coding'623DELoss-48.050N/ASMOC2N/A
2492765.58C15orf59'protein_coding'12DELoss-47.910N/AC15orf59N/A
2502785.56GFPT2'protein_coding'119DELoss-47.296ES AB IR GFPT20
2512795.56FAP'protein_coding'126DELoss-47.030N/AFAPN/A