Candidate peptides for comparison: 'Amygdala_Ampl_vs_Frontal_Ampl' (HS1815_vs_HS1814)

Candidate peptides for comparison: 'Amygdala_Ampl_vs_Frontal_Ampl' (HS1815_vs_HS1814) - Project: AllenBrain

The following table lists candidate peptides according to their difference in observed expression between the conditions. Each peptide corresponds to a specific exon region or exon junction. These may correspond to genes that are differentially expressed overall, or specific isoforms that are differentially expressed. All candidates are divided into those 'gained' or 'lost' in library A compared to B. The lists are further divided into peptides corresponding to novel junctions or any features type. 'Grand rank' refers to the overall ranking within each list. 'Rank' refers to the rank of peptides within a single gene if multiple candidates were identified. 'Gene Name' is the name assigned to this gene by EnsEMBL. This name links to the corresponding ALEXA-Seq gene expression record. 'Feature ID' is the ALEXA-Seq id assigned to the sequence feature used to predict the peptide sequence. The 'Feature Name' is the name assigned to the exon region or junction. 'Feature Type' indicates whether the feature corresponds to an exon or junction. 'Fold Change' is the fold difference observed between the libraries for the feature. 'Lib A Level' and 'Lib B Level' are the expression levels observed for this feature in Library A and B respectively. 'Exons Skipped' indicates the number of exons skipped by a junction. 'Is AE?' indicates whether the feature was considered alternatively expressed. 'Expressed Count' indicates whether the feature was expressed above background noise levels in one library (1) or both (2). 'Gene ORF Count' indicates the number of known transcript ORFs for the gene. 'Gene ORF Matches' indicates the subset of these that the peptide matches. 'ORFeome Matches' indicates the number of ORFs in the entire known ORFeome that the peptide matches perfectly. Finally the actual peptide sequence is provided. Only the top 100 events are shown in the following table. For a complete list and further details on each peptide, including the corresponding feature cDNA sequences, download the full data file above.

Grand Rank	Rank	Gene Name	Feature ID	Feature Name	Feature Type	Fold Change	LibA Level	LibB Level	Exons Skipped	Is AE?	Expressed Count (1 or 2)	Gene ORF Count	Gene ORF matches	ORFeome matches	Frame Maintained?	Peptide Sequence
1	1	ATP5I	EJ2402984	E1a_E3a	NovelJunction	24.55	1.89	69.88	1	1	1	1	0	0	no	VQVSPLIKIT*NLGQ
2	1	RDX	EJ1498803	E3a_E6a	NovelJunction	14.27	2.42	47.79	2	1	2	3	0	0	no	TGKQLFDQCIGTTQT
3	1	CEP164	EJ804774	E8b_E10a	NovelJunction	10.50	0.00	9.50	1	0	1	3	0	0	yes	DEEESDNQESLRTSQ
4	1	RIMS1	EJ390643	E1a_E3a	NovelJunction	10.42	0.00	9.42	1	1	1	13	0	0	yes	EKEEAMLKRLHQQFE
5	1	BAZ2B	EJ1108892	E19a_E21a	NovelJunction	10.13	0.77	16.97	2	1	1	8	0	0	no	QIKIMKQQAKKKKKE
6	1	ANKRD18A	EJ2618191	E11a_E13a	NovelJunction	10.07	0.00	9.07	1	1	1	3	0	0	yes	EKEKAEREPEEKHEE
7	1	TTN	EJ1996194	E148a_E150a	NovelJunction	9.66	0.00	8.66	1	0	1	20	1	1	yes	KKEAPPAKVPEVPKK
8	1	CCDC7	EJ3167201	E9a_E16a	NovelJunction	9.64	3.94	46.57	6	0	2	5	0	0	no	KDVSATEPQNAYK
9	1	DYNC1LI2	EJ1423390	E9a_E11a	NovelJunction	9.62	1.66	24.61	1	1	1	4	0	0	yes	QVFLMKQQESPARGP
10	1	SRRM1	EJ1354908	E7a_E7c	NovelJunction	9.35	11.02	111.40	0	1	2	3	0	0	no	EDKDKRDKKKKKAAE
11	1	OSBPL8	EJ499126	E2a_E7a	NovelJunction	7.79	0.68	12.07	4	0	1	6	0	0	no	DGEPDRTSLL*QTVT
12	1	MAP4	EJ155402	E8a_E10a	NovelJunction	7.47	1.00	13.94	1	1	1	18	0	0	no	NDPLKDSYVPLELAK
13	1	SR140	EJ2222207	E11c_E11b	NovelJunction	6.92	2.77	25.11	0	1	2	13	0	0	yes	RGKIYKPSRFADQKN
14	1	LZIC	EJ2155409	E6a_E9a	NovelJunction	6.35	1.00	11.69	3	0	1	3	0	0	no	QLRTRLAEALETKFL
15	1	OSBPL1A	EJ1609315	E21a_E27a	NovelJunction	6.24	0.74	9.86	7	1	1	5	0	0	no	ILRKCIGMQKEALCP
16	1	RPL27	EJ1304263	E2a_E4a	NovelJunction	5.95	30.45	186.12	1	1	2	1	0	0	no	GRKAVIVKVLCGYPL
17	1	DYX1C1	EJ1223973	E4a_E10a	NovelJunction	5.81	5.11	34.52	5	1	2	7	0	0	yes	YALSVMMKWLHKQAE
18	1	CCDC25	EJ1779462	E3a_E5a	NovelJunction	5.58	6.48	40.76	1	1	2	2	0	0	no	HGWPEDIWERI*KTS
19	1	RPSA	EJ2367929	E3a_E4c	NovelJunction	5.08	1.71	12.77	0	1	1	5	0	0	yes	ISSRNTGQGAHSVGL
20	1	C10orf68	EJ1825310	E6a_E12a	NovelJunction	4.97	1.77	12.80	5	0	2	7	0	0	yes	EVGADMSHAHDEESG
21	1	RBPSUH	EJ2374782	E11a_E13a	NovelJunction	4.79	3.00	18.14	1	1	1	6	0	0	yes	QERIIQFQLNGGGDV
22	1	AC073995.1	EJ2532695	E88a_E90a	NovelJunction	3.95	18.39	75.57	1	0	2	6	0	0	no	KLDQMRSQA*SRKCH
23	1	RPS27A	EJ1688074	E3d_E3c	NovelJunction	3.10	1956.19	6070.05	0	0	2	4	4	4	yes	TPKKNKHKRKKVKLA
24	1	SEC63	EJ108869	E19c_E19c	NovelJunction	2.91	9.15	28.51	0	1	2	5	0	0	no	KGPKKTAKKKRNL
25	1	PTP4A2	EJ2702637	E10a_E12a	NovelJunction	2.89	11.08	33.87	2	0	2	3	0	0	no	HCVAGLGRKRRGAFN
26	1	RAC1	EJ1453463	E7a_E9a	NovelJunction	2.39	17.24	42.64	2	0	1	5	0	0	no	SFENVRAKVL*NTWS

Grand Rank	Rank	Gene Name	Feature ID	Feature Name	Feature Type	Fold Change	LibA Level	LibB Level	Exons Skipped	Is AE?	Expressed Count (1 or 2)	Gene ORF Count	Gene ORF matches	ORFeome matches	Frame Maintained?	Peptide Sequence
1	1	IQWD1	EJ1652707	E25b_E28a	NovelJunction	-24.94	23.94	0.00	3	1	1	9	0	0	yes	GHRNSRTMVITRNEL
2	1	PSMB1	EJ52863	E4a_E8a	NovelJunction	-18.68	17.68	0.00	3	1	1	2	0	0	no	IIGGLDEEGWF*EHA
3	1	MICAL2	EJ1368496	E21a_E23a	NovelJunction	-17.26	16.26	0.00	1	1	1	3	0	0	yes	DSASPARKLTVGKVS
4	1	MTDH	EJ1784168	E3a_E6a	NovelJunction	-14.47	13.47	0.00	2	1	1	1	0	0	yes	HDGKEVDEVSSGLNE
5	1	NDUFB6	EJ2296706	E1a_E4a	NovelJunction	-13.90	12.90	0.00	2	1	1	2	0	0	yes	NKSPWRKMGDTILET
6	1	TNNT2	EJ1009006	E10b_E10d	NovelJunction	-13.45	12.45	0.00	0	0	1	18	0	0	no	ENRRKAEDPEEEGFV
7	1	CNOT2	EJ821177	E4a_E8a	NovelJunction	-11.56	10.56	0.00	3	1	1	2	0	0	yes	GASLYGQQNGSENVT
8	1	STK25	EJ948785	E6a_E6d	NovelJunction	-10.21	9.21	0.00	0	1	1	19	0	0	no	IQQEITVLISATAPT
9	1	CAMK2D	EJ1738676	E16b_E17a	NovelJunction	-9.85	18.35	0.96	0	1	1	10	0	0	yes	ENIPTPALEPQTTVI
10	1	GALE	EJ993261	E4c_E4b	NovelJunction	-8.85	7.85	0.00	0	1	1	9	0	0	no	SGCIGEDPAYPTTSC
11	1	SAT2	EJ1611743	E1b_E3a	NovelJunction	-8.42	7.42	0.00	1	1	1	3	0	0	no	DSGEDCRPP*EQMAL
12	1	HDAC3	EJ2466427	E6a_E8a	NovelJunction	-8.32	7.32	0.00	6	1	1	1	0	0	no	VRNVARCCIWTRSAR
13	1	RNF175	EJ1740461	E7a_E9a	NovelJunction	-7.82	6.82	0.00	2	1	1	2	0	0	yes	YQLSCNHVWERTHFL
14	1	STX8	EJ2434850	E3a_E6a	NovelJunction	-7.81	6.81	0.00	2	1	1	2	0	0	no	RKGEKAPKVQPDE*R
15	1	KHDRBS3	EJ1312842	E6a_E9a	NovelJunction	-7.36	19.16	1.74	2	1	1	2	0	0	no	TQETYGEYWCLLL
16	1	LSM1	EJ2550260	E2a_E4a	NovelJunction	-6.22	16.23	1.77	1	1	2	1	0	0	no	FLRSIDQFGLGKGE*
17	1	RAB1A	EJ1518007	E6a_E8a	NovelJunction	-6.03	13.98	1.49	1	1	1	6	0	0	yes	GKTIKLQIESFNNVK
18	1	CRELD1	EJ2221587	E8e_E8c	NovelJunction	-5.99	62.76	9.64	0	1	2	8	0	0	no	ICAEGYKQWKASV*R
19	1	POLB	EJ292814	E1a_E3a	NovelJunction	-5.85	9.29	0.76	1	1	1	1	0	0	no	GGITDMLTEKQHLL*
20	1	PCBP2	EJ2913815	E11a_E13b	NovelJunction	-5.70	18.85	2.48	1	1	1	7	0	0	yes	THGNTGFSGLDASAQ
21	1	NME5	EJ856568	E4a_E6a	NovelJunction	-5.61	9.40	0.85	1	1	1	1	0	0	no	EIRFMFPEDLAS*LA
22	1	MYBPC1	EJ2853697	E30a_E33a	NovelJunction	-5.59	108.84	18.63	2	0	2	6	0	0	no	IECKLEVKGGLSFCR
23	1	CHPT1	EJ823509	E4a_E6a	NovelJunction	-5.52	33.23	5.20	1	1	2	1	0	0	yes	GATMWDYTGTSVLSP
24	1	PPP1CB	EJ3129975	E4b_E4b	NovelJunction	-5.43	9.76	0.98	0	1	1	9	6	12	yes	FLLRGNHECASINRI
25	1	PAN2	EJ1415927	E25a_E27a	NovelJunction	-5.39	8.82	0.82	1	0	1	4	0	0	yes	RFLAWYFLDAAVFSS
26	1	C9orf103	EJ1788197	E1b_E5a	NovelJunction	-5.31	12.27	1.50	3	1	2	5	0	0	no	MGVSGSGNWDGNSMM
27	1	C14orf153	EJ1160071	E22a_E23a	NovelJunction	-5.09	344.21	66.85	0	1	2	13	0	0	yes	SGPDGGEEMRKMKLG
28	1	ANKRD18B	EJ3220005	E4a_E6a	NovelJunction	-4.41	10.65	1.64	1	1	2	3	0	0	yes	HAVDNFKSIQQQILE
29	1	COX16	EJ1371577	E1a_E3a	NovelJunction	-3.81	14.97	3.19	1	1	2	1	0	0	yes	LGYGVPMLMDPELEK
30	1	AARSD1	EJ787489	E13b_E15a	NovelJunction	-3.51	16.55	4.00	1	1	2	17	0	0	no	GGVVILHRRPSCS*L
31	1	EVL	EJ2874797	E11a_E13a	NovelJunction	-3.51	28.89	7.52	1	1	2	2	0	0	yes	PVSSILSRMKPAGSV
32	1	TMEM126B	EJ2453954	E1a_E4a	NovelJunction	-3.35	17.18	4.43	2	0	2	4	0	0	no	VGTEEAPKDTKYISN
33	1	PAM	EJ1745233	E23a_E25a	NovelJunction	-3.29	19.84	5.33	2	0	2	10	0	0	yes	GIEVQEIKADSEHKL
34	1	BCS1L	EJ328832	E6b_E6d	NovelJunction	-3.24	18.84	5.12	0	0	2	15	0	0	no	DRIVRDVQNSSITPS
35	1	EIF3L	EJ566060	E12a_E15a	NovelJunction	-3.23	12.95	3.32	4	1	2	11	0	0	yes	EVDFYIDKLNRTLKK
36	1	OCIAD2	EJ1737745	E2a_E4a	NovelJunction	-3.18	21.10	5.94	1	1	2	2	0	0	no	HFPPPSKQLCLFLL*
37	1	AC026740.1	EJ3157548	E1a_E2b	NovelJunction	-3.05	16.94	4.88	1	0	1	2	0	0	no	DGPGMLAHEMGAQYW
38	1	RTF1	EJ1503100	E2a_E5a	NovelJunction	-2.81	31.87	10.70	3	1	2	2	0	0	no	ETSDSDDEVKCQTLT
39	1	SERGEF	EJ1230369	E8a_E10a	NovelJunction	-2.39	42.31	17.08	1	0	2	1	0	0	no	WTHLVAQTGLLWLRA
40	1	NGLY1	EJ1842178	E14a_E14b	NovelJunction	-2.02	57.48	27.97	0	0	2	8	4	4	yes	ISWKFECGSVGLKVD

Grand Rank	Rank	Gene Name	Feature ID	Feature Name	Feature Type	Fold Change	LibA Level	LibB Level	Exons Skipped	Is AE?	Expressed Count (1 or 2)	Gene ORF Count	Gene ORF matches	ORFeome matches	Frame Maintained?	Peptide Sequence
1	1	EEA1	EJ634640	E22a_E23a	KnownJunction	135.87	0.68	226.91	0	1	1	2	2	2	yes	LKIAVLQKTELENKL
2	2	EEA1	ER48419	ER22a	Exon	38.20	4.71	217.00	N/A	1	1	2	2	2	yes	NEKEEQQLQGNINEL
3	1	SYNJ1	EJ2088301	E17a_E18a	KnownJunction	130.22	0.90	246.84	0	0	1	17	9	9	yes	PQHAPFIRDVAVDTV
4	2	SYNJ1	ER210423	ER17a	Exon	52.55	2.35	174.84	N/A	0	1	17	9	9	yes	RDNKYVLLASEQLVG
5	1	SLC12A2	EJ231965	E22a_E23a	KnownJunction	98.05	2.35	327.94	0	1	2	2	2	2	yes	VWWLFDDGGLTLLIP
6	2	SLC12A2	ER327672	ER23a	Exon	93.04	1.64	244.54	N/A	1	1	2	2	2	yes	TKKKWKDCKIRVFIG
7	1	AKAP9	ER373625	ER33b	Exon	85.99	1.41	206.35	N/A	1	1	12	5	5	yes	KEKKLLELQKLLEGN
8	2	AKAP9	EJ1197624	E19b_E20a	KnownJunction	54.18	0.00	53.18	1	1	1	12	4	4	yes	RLNRQLAQRSSIDNE
9	1	CAPRIN1	EJ1413391	E2a_E3a	KnownJunction	84.40	0.00	83.40	0	1	1	3	3	3	yes	LRNLEKKKGKLDDYQ
10	2	CAPRIN1	ER25774	ER3a	Exon	53.44	0.00	52.44	N/A	1	1	3	3	3	yes	DDYQERMNKGERLNQ
11	1	VPS13C	EJ1227824	E29a_E30a	KnownJunction	79.50	0.00	78.50	0	0	1	4	4	4	yes	LLKVEYIKADKNGPS
12	2	VPS13C	ER78712	ER30a	Exon	61.32	0.74	105.47	N/A	0	1	4	4	4	yes	NGPSFQTAFGKTEQT
13	1	UBAP2	EJ1478372	E4a_E4b	KnownJunction	68.51	0.00	67.51	0	0	1	13	6	6	yes	DFEAKVKQLMEVTGK
14	2	UBAP2	ER404006	ER4d	Exon	54.59	0.27	68.20	N/A	0	1	13	7	7	yes	CIVALHDCNGDVNKA
15	1	MPDZ	EJ748176	E8a_E9a	KnownJunction	62.56	0.00	61.56	0	1	1	10	4	4	yes	GYIGDKKLEPSGIFV
16	2	MPDZ	ER401301	ER10a	Exon	40.86	0.45	58.13	N/A	1	1	10	4	4	yes	TVLLTLMRRGMKQEA
17	1	ZC3H13	ER59065	ER6a	Exon	62.36	6.55	469.67	N/A	1	1	5	2	2	yes	EDIKITKERTPESEE
18	2	ZC3H13	EJ1098201	E12a_E13a	KnownJunction	47.57	4.94	281.34	0	1	2	5	3	3	yes	RVPELPEKGSRGSRG
19	1	TPR	EJ151891	E21b_E22a	KnownJunction	62.27	0.00	61.27	0	1	1	3	1	1	yes	HTLTRNLDVQLLDTK
20	2	TPR	ER148911	ER22a	Exon	34.63	0.00	33.63	N/A	1	1	3	1	1	yes	ELLKNAQKEIATLKQ
21	1	MAP4K5	EJ86278	E10a_E11a	KnownJunction	57.11	1.61	148.22	0	1	1	2	2	2	yes	MFDLHPMRALFLMSK
22	2	MAP4K5	ER67073	ER10a	Exon	56.56	7.20	462.77	N/A	1	1	2	2	2	yes	NQLCDIWAVGITAIE
23	1	CDC27	EJ17733	E9a_E10a	KnownJunction	55.62	2.63	200.85	0	1	2	3	2	2	yes	QSSGPQTSTTPQVLS
24	2	CDC27	ER110575	ER9b	Exon	26.06	11.00	311.79	N/A	1	1	3	2	2	yes	SVFSQSGNSREVTPI
25	1	STRN	EJ954405	E6a_E7a	KnownJunction	54.88	0.00	53.88	0	1	1	2	2	2	yes	KSVIDTSTIVRKKAL
26	2	STRN	ER237552	ER6a	Exon	37.59	0.00	36.59	N/A	1	1	2	2	2	yes	KFLESAAADFSDEDE
27	1	ARAP2	EJ150561	E11a_E12a	KnownJunction	53.33	0.00	52.33	0	1	1	1	1	1	yes	VVICKKCAGQHRSLG
28	2	ARAP2	ER310347	ER12a	Exon	27.27	2.29	88.84	N/A	1	1	1	1	1	yes	PKDSKVRSLKMDASI
29	1	DDX46	EJ1748197	E4a_E5a	KnownJunction	53.32	0.66	87.58	0	1	1	2	2	2	yes	DEKEKDAGNFDQNKL
30	2	DDX46	ER332040	ER5a	Exon	13.51	3.94	65.73	N/A	1	1	2	2	2	yes	REEQRKKAMENIGEL
31	1	MYO5A	EJ2931053	E25a_E26a	KnownJunction	53.09	1.00	105.17	0	1	1	6	5	5	yes	EDIPSRTEEPSEKKV
32	2	MYO5A	ER81414	ER28a	Exon	37.92	4.05	190.54	N/A	1	1	6	6	6	yes	APGAPAYRVLMEQLT
33	1	DST	EJ1862638	E13a_E14a	KnownJunction	52.21	1.77	143.85	0	1	2	13	8	8	yes	GGEGIGANDVEVKWI
34	2	DST	ER348434	ER14a	Exon	34.22	3.43	150.53	N/A	1	1	13	8	8	yes	NYLIQWIRHHVTTMS
35	1	PTPN11	ER53412	ER6a	Exon	51.46	6.38	378.82	N/A	1	1	3	3	3	yes	IESRVRELSKLAETT
36	2	PTPN11	EJ2606462	E5a_E6a	KnownJunction	23.81	14.42	366.21	0	1	2	3	3	3	yes	GTVLQLKQPLNTTRI
37	1	ITGB1	ER4756	ER12a	Exon	50.95	10.10	564.27	N/A	1	1	20	13	13	yes	QEGMPTSARCDDLEA
38	2	ITGB1	EJ1825998	E11b_E12a	KnownJunction	48.86	5.97	339.45	0	1	2	20	12	12	yes	NCGWCTNSTFLQEGM
39	1	HECTD1	EJ514740	E9a_E10a	KnownJunction	50.25	0.66	82.48	0	1	1	4	2	2	yes	VVAILQSPGDWMCPV
40	2	HECTD1	ER64650	ER34a	Exon	27.21	3.59	123.96	N/A	1	1	4	2	2	yes	TKEQPQAKAGNGQNS
41	1	THAP5	ER382033	ER4c	Exon	47.73	0.41	66.12	N/A	1	1	6	2	2	yes	LKQTAVPTIFSLPED
42	2	THAP5	EJ2581757	E1a_E4a	KnownJunction	27.96	1.00	54.92	4	1	1	6	2	2	yes	DRKLSFYPFPLHDKE
43	1	AP001011.3	ER120313	ER17a	Exon	47.66	0.48	69.65	N/A	1	1	2	2	2	yes	GEAMQKLPGTSHGGS
44	2	AP001011.3	EJ616623	E16a_E17a	KnownJunction	46.21	0.00	45.21	0	1	1	2	2	2	yes	VRPAGTPIGALRIEI
45	1	AC008088.2	EJ1941088	E12a_E13a	KnownJunction	45.96	0.92	87.21	0	0	1	4	1	1	yes	AQKKRNPEISHRHQK
46	2	AC008088.2	ER105472	ER12a	Exon	19.79	3.79	93.81	N/A	0	1	4	1	4	yes	EQDARILQDQILTSK
47	1	FAM135A	ER349995	ER15c	Exon	45.35	0.56	69.89	N/A	1	1	8	2	2	yes	LKVRPAGASSIWYTE
48	1	CREBBP	EJ21408	E27a_E28a	KnownJunction	45.33	0.00	44.33	0	1	1	3	3	3	yes	ERIIHDYKDIFKQAT
49	2	CREBBP	ER86114	ER28a	Exon	34.36	0.00	33.36	N/A	1	1	3	3	4	yes	GDFWPNVLEESIKEL
50	1	TBC1D12	ER11383	ER4b	Exon	44.76	0.96	86.56	N/A	1	1	1	1	1	yes	PPQSSRRKNFEFEPL
51	2	TBC1D12	EJ775521	E2a_E4b	KnownJunction	38.74	0.00	37.74	1	1	1	1	1	1	yes	KTSKIIQQEYEARTG
52	1	LRP1B	ER255785	ER32a	Exon	44.04	0.00	43.04	N/A	0	1	4	1	1	yes	TINMANMDGSNSKIL
53	2	LRP1B	EJ2391847	E32a_E33a	KnownJunction	20.90	0.00	19.90	0	0	1	4	1	1	yes	FQNQKEPVGLSIDYV
54	1	PHF3	ER347401	ER6b	Exon	43.64	0.00	42.64	N/A	1	1	2	2	2	yes	EKIPKESTTVTCTGE
55	2	PHF3	EJ1012669	E6b_E7a	KnownJunction	21.09	0.00	20.09	0	1	1	2	2	2	yes	TGEKASKPGTHEKQE
56	1	RBM28	EJ728287	E1a_E3a	KnownJunction	43.53	0.00	42.53	1	1	1	5	2	2	yes	QCFVVTEKGSKACRG
57	1	TJP1	ER74709	ER7a	Exon	43.53	2.58	155.00	N/A	1	1	4	4	4	yes	RDNPHFQSGETSIVI
58	2	TJP1	EJ671032	E5a_E7a	KnownJunction	26.72	0.90	49.85	1	1	1	4	3	3	yes	QHTVTLHRAPGFGFG
59	1	USP34	EJ933656	E18b_E20a	KnownJunction	43.51	0.00	42.51	1	1	1	8	4	4	yes	HHHHHHDGHMVDDML
60	2	USP34	ER243257	ER6a	Exon	34.98	1.82	97.80	N/A	1	1	8	2	2	yes	DSTWQDESNQAEEPL
61	1	NEK1	EJ1496272	E29a_E30a	KnownJunction	43.09	0.00	42.09	0	1	1	4	4	4	yes	DQLSDIHIEPGTNDS
62	2	NEK1	ER321130	ER15a	Exon	17.88	0.00	16.88	N/A	1	1	4	3	3	yes	RAREQGWRNVLSAGG
63	1	BAZ2B	ER258672	ER8c	Exon	42.04	0.09	44.95	N/A	1	1	8	2	2	yes	DSSSFHSRTSGKSNR
64	2	BAZ2B	EJ1108556	E10b_E11b	KnownJunction	36.04	0.90	67.59	0	1	1	8	4	4	yes	TSELRSKREQYKQAF
65	3	BAZ2B	EJ1108892	E19a_E21a	NovelJunction	10.13	0.77	16.97	2	1	1	8	0	0	no	QIKIMKQQAKKKKKE
66	1	SYNE2	ER67262	ER24a	Exon	41.46	0.91	78.15	N/A	0	1	9	2	2	yes	KAVEELKNNVTEDIK
67	2	SYNE2	EJ187260	E16a_E17a	KnownJunction	16.14	0.00	15.14	0	0	1	9	2	2	yes	ELLLEDWHKFIEEKE
68	1	JMJD1C	EJ2476913	E8c_E9a	KnownJunction	39.29	0.00	38.29	0	1	1	4	3	3	yes	KYDYISRGENPKGKN
69	2	JMJD1C	ER9038	ER8c	Exon	17.05	0.48	24.16	N/A	1	1	4	3	3	yes	QQRSIRPNKRKGSDS
70	1	MLL3	ER388234	ER29a	Exon	38.47	6.02	269.08	N/A	1	2	13	2	2	yes	GQGKTKRSVIRKDSS
71	2	MLL3	EJ198830	E29a_E30a	KnownJunction	17.19	11.48	213.54	0	1	2	13	2	2	yes	EQLPCRDDGWSEQLP
72	1	SUPT16H	EJ516002	E10a_E11a	KnownJunction	38.31	0.00	37.31	0	1	1	1	1	1	yes	GDTVLVDEDGPATVL
73	2	SUPT16H	ER64723	ER10a	Exon	10.09	2.08	30.04	N/A	1	1	1	1	1	yes	DLTNKEGKKPEEKTY
74	1	KIAA1524	EJ2201312	E18a_E19a	KnownJunction	37.79	0.00	36.79	0	0	1	4	2	2	yes	SYMELLQRNESTEKK
75	2	KIAA1524	ER295295	ER19a	Exon	28.15	0.37	37.57	N/A	0	1	4	2	2	yes	QITCDSLNKQIETVK
76	1	TCP11L2	EJ2316371	E6a_E7a	KnownJunction	37.36	0.00	36.36	0	0	1	1	1	1	yes	QEILEETPSALDQTT
77	2	TCP11L2	ER53049	ER7a	Exon	24.60	0.00	23.60	N/A	0	1	1	1	1	yes	ALTPGAENTSKPSLS
78	1	EP300	EJ586666	E28a_E29a	KnownJunction	37.26	1.61	96.36	0	1	1	1	1	1	yes	NTSNESTDVTKGDSK
79	2	EP300	ER224044	ER28a	Exon	24.69	5.69	164.11	N/A	1	2	1	1	4	yes	EGDFWPNVLEESIKE
80	1	POLR3G	EJ861376	E4a_E5a	KnownJunction	36.50	0.00	35.50	0	1	1	1	1	1	yes	VYKEEWIPDWRRLPR
81	2	POLR3G	ER327935	ER6a	Exon	16.52	2.18	51.47	N/A	1	1	1	1	1	yes	AKDAGKGTPLTNTED
82	1	GSPT1	EJ659164	E5a_E6a	KnownJunction	35.88	0.00	34.88	0	1	1	4	4	4	yes	NVVFIGHVDAGKSTI
83	2	GSPT1	ER87433	ER5b	Exon	13.04	3.31	55.21	N/A	1	1	4	4	4	yes	GRPPEESAHEMMEEE
84	1	AFF2	EJ2024694	E4a_E5a	KnownJunction	35.78	0.00	34.78	0	0	1	5	3	3	yes	DLFGEPYKTNKGDAL
85	2	AFF2	ER438562	ER5a	Exon	20.28	0.09	21.04	N/A	0	1	5	5	5	yes	FVYPAEQPQIGEVEE
86	1	SNRK	EJ2225776	E6a_E7b	KnownJunction	35.20	0.00	34.20	0	1	1	4	4	4	yes	ADRDAIVEALETNRY
87	2	SNRK	ER284844	ER7c	Exon	20.49	0.05	20.44	N/A	1	1	4	4	4	yes	LAERILREKQEKEIQ
88	1	PHLPP1	EJ412123	E19a_E20a	KnownJunction	34.80	1.58	88.80	0	1	1	3	3	3	yes	EASGVKNKLCVAALS
89	2	PHLPP1	ER123161	ER19a	Exon	15.01	11.69	189.39	N/A	1	2	3	3	3	yes	STGDASGAPAVWSHG
90	1	CNOT4	EJ400624	E4a_E5a	KnownJunction	34.65	2.89	133.70	0	1	2	8	8	8	yes	GLCPACRKPYPEDPA
91	2	CNOT4	ER384003	ER4b	Exon	25.55	4.40	136.91	N/A	1	1	8	8	8	yes	EIDDINFFPCTCGYQ
92	1	SLCO1A2	ER42279	ER14a	Exon	33.90	11.05	407.39	N/A	1	2	14	4	4	yes	GPLIGLLLASFCANV
93	2	SLCO1A2	EJ430404	E10e_E12a	KnownJunction	32.09	0.00	31.09	1	1	1	14	5	5	yes	LPHFLMNQYEYESTV
94	1	BIRC6	ER237447	ER4a	Exon	33.67	0.35	44.40	N/A	1	1	4	2	2	yes	VTFHLPHHVLKSIAS
95	2	BIRC6	EJ950271	E2a_E3a	KnownJunction	29.78	0.00	28.78	0	1	1	4	2	2	yes	QLELPVTEAQQLLSA
96	1	MYO6	EJ2889379	E27a_E28a	KnownJunction	33.65	9.66	357.77	0	1	2	7	7	7	yes	KEEEERRMKLEMEAK
97	2	MYO6	ER351591	ER27b	Exon	31.25	18.56	610.29	N/A	1	2	7	7	7	yes	REEDEKRRRKEEEER
98	1	USP2	EJ126095	E13a_E14a	KnownJunction	33.35	0.00	32.35	0	0	1	4	4	4	yes	REFASENTNHAVYNL
99	2	USP2	ER35443	ER11a	Exon	19.68	0.00	18.68	N/A	0	1	4	4	4	yes	TLMDCMRLFTKEDVL
100	1	KIF2A	ER325157	ER5a	Exon	33.16	0.00	32.16	N/A	1	1	4	4	4	yes	RTVASIKNDPPSRDN

Grand Rank	Rank	Gene Name	Feature ID	Feature Name	Feature Type	Fold Change	LibA Level	LibB Level	Exons Skipped	Is AE?	Expressed Count (1 or 2)	Gene ORF Count	Gene ORF matches	ORFeome matches	Frame Maintained?	Peptide Sequence
1	1	TNNT2	ER153669	ER13b	Exon	-73.98	83.41	0.14	N/A	0	1	18	14	14	yes	IYNLEAEKFDLQEKF
2	2	TNNT2	EJ1009038	E13a_E14a	KnownJunction	-68.18	67.18	0.00	1	0	1	18	14	14	yes	KFKQQKYEINVLRNR
3	3	TNNT2	EJ1009006	E10b_E10d	NovelJunction	-13.45	12.45	0.00	0	0	1	18	0	0	no	ENRRKAEDPEEEGFV
4	1	CDS1	EJ2211880	E11a_E12a	KnownJunction	-58.15	104.94	0.82	0	1	1	1	1	3	yes	FKRAFKIKDFANTIP
5	2	CDS1	ER317317	ER12a	Exon	-56.23	97.40	0.75	N/A	1	1	1	1	3	yes	GIMDRFDCQYLMATF
6	1	ATP1A1	EJ2195956	E17b_E18a	KnownJunction	-47.56	46.56	0.00	0	1	1	7	2	2	yes	PVSQVNPRDAKACVV
7	2	ATP1A1	ER186043	ER17b	Exon	-14.87	80.67	4.49	N/A	1	1	7	2	4	yes	EDIAARLNIPVSQVN
8	1	TIAM2	EJ1757630	E26a_E27a	KnownJunction	-47.34	46.34	0.00	0	0	1	6	6	6	yes	NCKLKKKLPSNSRPA
9	2	TIAM2	ER356964	ER27a	Exon	-19.58	60.68	2.15	N/A	0	1	6	6	6	yes	DLDPFKFRWLIPISA
10	1	ATRNL1	ER15073	ER29a	Exon	-38.84	37.84	0.00	N/A	1	1	7	5	5	yes	SQHNTIMDLVQFFVT
11	2	ATRNL1	EJ755334	E26a_E29a	KnownJunction	-26.23	25.23	0.00	2	1	1	7	4	4	yes	FSWPIKIQIAFSQHN
12	1	GRIA2	EJ1044466	E13a_E15a	KnownJunction	-38.12	443.77	10.67	2	1	2	7	2	2	yes	GSGGGDSKEKTSALS
13	2	GRIA2	ER318967	ER13a	Exon	-14.88	389.34	25.23	N/A	1	1	7	3	7	yes	EQGLLDKLKNKWWYD
14	1	SNAP25	EJ1335769	E9a_E10a	KnownJunction	-37.70	835.60	21.19	0	1	2	3	2	2	yes	QIDRIMEKADSNKTR
15	2	SNAP25	ER199307	ER9a	Exon	-20.14	991.24	48.26	N/A	1	1	3	2	2	yes	VSGIIGNLRHMALDM
16	1	GLRB	EJ797862	E9a_E10a	KnownJunction	-37.08	72.40	0.98	0	1	1	1	1	1	yes	PVHISTLQVGETRCK
17	2	GLRB	ER318920	ER9a	Exon	-18.15	52.53	1.95	N/A	1	1	1	1	1	yes	SLVEYAVVQVMLNNP
18	1	APBA2	EJ121334	E14a_E15a	KnownJunction	-36.10	35.10	0.00	0	1	1	3	2	2	yes	ALSNSVGEIHMKTMP
19	2	APBA2	ER74511	ER14a	Exon	-4.81	31.80	5.82	N/A	0	1	3	2	2	yes	VGHRIIEINGQSVVA
20	1	PI4KA	EJ3279642	E46a_E47b	KnownJunction	-36.08	35.08	0.00	0	0	1	5	4	4	yes	TNVSAIIKPYPKGDE
21	2	PI4KA	ER220746	ER47b	Exon	-33.44	32.44	0.00	N/A	0	1	5	4	4	yes	DERKKACLSALSEVK
22	1	CRYM	EJ657138	E4a_E5a	KnownJunction	-35.13	34.13	0.00	0	1	1	3	3	3	yes	PSNGTLLAVMDGNVI
23	2	CRYM	ER90739	ER8a	Exon	-14.35	149.28	9.48	N/A	1	2	3	3	3	yes	DELMKEAVLYVDSQE
24	1	NME1	ER113908	ER4a	Exon	-35.01	125.88	2.62	N/A	1	1	5	5	9	yes	AIKPDGVQRGLVGEI
25	2	NME1	EJ3265412	E6a_E7a	KnownJunction	-5.53	607.24	109.05	0	1	2	5	4	8	yes	DFCIQVGRNIIHGSD
26	1	SULT4A1	EJ1254807	E6a_E8a	KnownJunction	-34.23	33.23	0.00	2	1	1	4	1	1	yes	AEALPVGRGRVGLWK
27	1	GABBR2	EJ1476186	E13a_E14a	KnownJunction	-33.58	32.58	0.00	0	1	1	1	1	1	yes	KNVKMKKKIIKDQKL
28	2	GABBR2	ER408851	ER16a	Exon	-15.80	134.65	7.59	N/A	1	1	1	1	1	yes	VGIMCIIGAAVSFLT
29	1	ARL2BP	EJ650375	E2a_E3a	KnownJunction	-33.32	32.32	0.00	0	1	1	1	1	1	yes	GYLEDIIMDDEFQLL
30	1	SNAP91	EJ244337	E28a_E29a	KnownJunction	-32.84	31.84	0.00	0	0	1	8	5	5	yes	GVPPSAPLQGAVPPT
31	1	PFKP	EJ260687	E15a_E16a	KnownJunction	-32.02	31.02	0.00	0	0	1	11	4	4	yes	DAVRLRGRSFAGNLN
32	2	PFKP	ER330	ER15a	Exon	-31.30	30.30	0.00	N/A	0	1	11	4	4	yes	VQKAMDERRFQDAVR
33	1	SYNE1	EJ1294583	E146a_E147a	KnownJunction	-31.87	30.87	0.00	0	1	1	18	14	14	yes	QDALMQCQGFHEMSH
34	2	SYNE1	ER356615	ER147a	Exon	-11.01	57.38	4.30	N/A	1	2	18	14	14	yes	NIDRRKNEIVPIDSN
35	1	HECW1	EJ6783	E35a_E36a	KnownJunction	-31.77	30.77	0.00	0	0	1	5	3	3	yes	ALVRGFYEVVDSRLV
36	2	HECW1	ER364957	ER35a	Exon	-25.08	24.60	0.02	N/A	0	1	5	3	3	yes	KNKKEYIERMVKWRV
37	1	YARS2	EJ1563781	E3a_E4a	KnownJunction	-31.47	30.47	0.00	0	1	1	1	1	1	yes	EGLDSAKRCTQALYH
38	2	YARS2	ER43176	ER3a	Exon	-7.60	40.13	4.41	N/A	1	2	1	1	1	yes	LHVKEPERRGPQKRL
39	1	NELL2	EJ2717075	E17a_E18a	KnownJunction	-30.97	29.97	0.00	0	1	1	5	5	5	yes	RIDDYSCTEHDECIT
40	2	NELL2	ER44234	ER22a	Exon	-22.40	181.46	7.15	N/A	1	1	5	5	5	yes	CPECDPRLSSQCLHQ
41	1	ADAM23	EJ908429	E17a_E18a	KnownJunction	-29.97	28.97	0.00	0	1	1	6	3	3	yes	CCNNTSCLFQPRGYE
42	2	ADAM23	ER263662	ER15a	Exon	-28.34	27.34	0.00	N/A	1	1	6	3	3	yes	KCSILEYRDFLQRGG
43	1	DOC2A	EJ1823980	E7a_E8a	KnownJunction	-29.73	28.73	0.00	0	1	1	1	1	1	yes	GISCYLKELEQAEQG
44	2	DOC2A	ER91396	ER10a	Exon	-12.26	146.43	11.02	N/A	1	2	1	1	1	yes	TLATKTLEVTVWDYD
45	1	CDH18	ER323245	ER10a	Exon	-29.40	28.40	0.00	N/A	1	1	2	2	2	yes	RVLDVNDNPPELARE
46	2	CDH18	EJ1741139	E8a_E9a	KnownJunction	-23.82	22.82	0.00	0	1	1	2	2	2	yes	DSTNSLVRYFINYNV
47	1	OLFM3	EJ1015813	E10a_E10b	KnownJunction	-28.02	27.02	0.00	0	1	1	4	1	1	no	EYAGFHNVPTHGVDS
48	2	OLFM3	ER181779	ER5a	Exon	-17.68	16.68	0.00	N/A	1	1	4	3	3	yes	PDGRCICTVVAPEQN
49	1	AHCYL1	EJ2393883	E7a_E8a	KnownJunction	-27.98	107.90	2.89	0	1	1	3	3	3	yes	MDGWQANMILDDGGD
50	2	AHCYL1	ER183245	ER8a	Exon	-8.62	144.34	15.86	N/A	1	1	3	3	3	yes	VYKKYPNVFKKIRGI
51	1	NOL4	ER120604	ER7a	Exon	-27.62	32.60	0.22	N/A	1	1	3	3	3	yes	LSLNRGDEDEDDHED
52	2	NOL4	EJ621669	E6a_E7a	KnownJunction	-24.02	23.02	0.00	0	1	1	3	3	3	yes	EARENGSKSPAHSYS
53	1	C20orf103	EJ1153842	E3a_E4a	KnownJunction	-27.35	26.35	0.00	0	1	1	2	1	1	yes	ALKMLFVKESHNMSK
54	2	C20orf103	ER199084	ER4a	Exon	-12.47	32.54	1.69	N/A	1	1	2	2	2	yes	TWRLSKVQFVYDSSE
55	1	GABRG2	ER333986	ER13b	Exon	-27.31	61.93	1.30	N/A	1	1	4	4	4	yes	IRIAKMDSYARIFFP
56	2	GABRG2	EJ861246	E1a_E2a	KnownJunction	-15.10	14.10	0.00	0	1	1	4	4	4	yes	LLLSLYPGFTSQKSD
57	1	PRMT8	ER39597	ER11a	Exon	-27.16	27.01	0.03	N/A	0	1	3	2	2	yes	IYTVKTEELSFTSAF
58	2	PRMT8	EJ817366	E10a_E11a	KnownJunction	-18.84	17.84	0.00	0	0	1	3	2	8	yes	VTNACLIKEVDIYTV
59	1	COL5A2	EJ3059896	E51a_E52a	KnownJunction	-27.13	26.13	0.00	0	0	1	3	3	3	yes	LCHSAKQSGEYWIDP
60	2	COL5A2	ER267355	ER51b	Exon	-16.30	15.30	0.00	N/A	0	1	3	3	3	yes	KNKTDPGVHATLKSL
61	1	OSBPL6	ER257496	ER21a	Exon	-27.05	27.86	0.07	N/A	1	1	7	6	6	yes	RNNIGKDLSKVSMPV
62	2	OSBPL6	EJ382670	E23a_E24a	KnownJunction	-22.91	41.82	0.87	0	1	1	7	6	6	yes	SKNFVFWQDIRWKNK
63	1	SATB1	EJ2649798	E17b_E18b	KnownJunction	-26.89	45.87	0.74	0	0	1	12	4	4	yes	TPPSRPPQVKTATIA
64	2	SATB1	ER279214	ER17a	Exon	-9.12	58.81	5.56	N/A	0	1	12	4	4	yes	DPKTASQSLLVNLRA
65	1	CAMK1D	EJ2661166	E4a_E5a	KnownJunction	-26.84	52.13	0.98	0	1	1	2	2	4	yes	GIVHRDLKPENLLYY
66	2	CAMK1D	ER2833	ER5a	Exon	-23.85	85.76	2.64	N/A	1	1	2	2	2	yes	IMISDFGLSKMEGKG
67	1	PRMT7	EJ1335251	E15a_E16a	KnownJunction	-26.82	25.82	0.00	0	1	1	4	4	4	yes	HAVVVEFRDLWRIRS
68	2	PRMT7	ER97613	ER14a	Exon	-10.66	29.33	1.84	N/A	1	1	4	3	3	yes	EDKINIIEKRPELLT
69	1	DNAH7	ER264483	ER67a	Exon	-26.34	25.34	0.00	N/A	0	1	6	2	2	yes	DLEEVVSSILNVKIP
70	2	DNAH7	EJ1021589	E67a_E68a	KnownJunction	-19.65	18.65	0.00	0	0	1	6	2	2	yes	LARLKFLQQWYEVGP
71	1	SLC25A12	EJ956130	E21a_E22a	KnownJunction	-26.08	50.63	0.98	0	1	1	5	2	2	yes	LGIFGLYKGAKACFL
72	2	SLC25A12	ER258340	ER20a	Exon	-20.12	51.40	1.60	N/A	1	1	5	2	2	yes	DKFTRRDGSVPLPAE
73	1	FZD3	EJ674650	E6a_E7a	KnownJunction	-25.58	24.58	0.00	0	0	1	1	1	1	yes	FHGRRKKEIVNESRQ
74	1	PRKCB	EJ2330121	E19a_E20b	KnownJunction	-25.26	24.26	0.00	0	1	1	2	1	1	yes	QPPYKPKARDKRDTS
75	2	PRKCB	ER91809	ER19a	Exon	-11.61	401.28	33.66	N/A	1	1	2	2	2	yes	ERDIKEHAFFRYIDW
76	1	LRMP	EJ1011121	E16a_E17a	KnownJunction	-25.10	24.10	0.00	0	1	1	2	2	2	yes	RSASLNSKPSSLRRV
77	2	LRMP	ER42698	ER19a	Exon	-21.19	31.20	0.52	N/A	1	1	2	2	2	yes	HRPSLPRFISTYSWA
78	1	VSNL1	EJ2182270	E8c_E9a	KnownJunction	-24.99	552.79	21.16	0	1	2	5	3	3	yes	VEMLEIIEAIYKMVG
79	2	VSNL1	ER232428	ER8a	Exon	-18.99	523.92	26.65	N/A	0	2	5	5	5	yes	FDKNGDGTIDFREFI
80	1	IQWD1	EJ1652707	E25b_E28a	NovelJunction	-24.94	23.94	0.00	3	1	1	9	0	0	yes	GHRNSRTMVITRNEL
81	2	IQWD1	EJ1652532	E14a_E15a	KnownJunction	-5.73	9.53	0.84	0	1	1	9	5	5	yes	PESERERDGEQSPNV
82	3	IQWD1	ER194611	ER27b	Exon	-5.73	254.08	43.54	N/A	0	2	9	4	4	yes	DIKIWSPLEESRIFN
83	1	VPS13A	EJ2964527	E59a_E60a	KnownJunction	-24.92	23.92	0.00	0	1	1	8	7	7	yes	PKSVTMDSAPKPFTD
84	2	VPS13A	ER410467	ER60a	Exon	-10.72	19.37	0.90	N/A	1	1	8	7	7	yes	TDVSIVMRSAGHSQI
85	1	TSPAN7	EJ2030998	E4a_E12b	KnownJunction	-24.71	23.71	0.00	8	1	1	8	1	1	yes	IIYSFVFWITGVILL
86	2	TSPAN7	ER426257	ER15a	Exon	-12.75	190.29	14.00	N/A	1	1	8	5	5	yes	WSTSPYFLEHGIPPS
87	1	CACNA2D3	EJ2058165	E42c_E42e	KnownJunction	-24.66	23.66	0.00	0	1	1	10	3	3	yes	MAPIEIRYNESLKCE
88	1	RALYL	EJ2719140	E5a_E6a	KnownJunction	-24.58	23.58	0.00	0	1	1	1	1	1	yes	ASGSTGSKLKSDELQ
89	2	RALYL	ER396745	ER7a	Exon	-11.08	62.25	4.71	N/A	1	1	1	1	1	yes	IADHSTEEPAEGGPD
90	1	PIP5K1B	EJ749886	E24a_E30a	KnownJunction	-24.26	23.26	0.00	5	0	1	7	2	2	yes	RPTLYSNSKGLPSSS
91	2	PIP5K1B	ER406424	ER30a	Exon	-22.02	42.67	0.98	N/A	0	1	7	2	2	yes	EGTIYLTAEPNTLEV
92	1	SLC25A33	ER146650	ER4a	Exon	-24.09	48.61	1.06	N/A	1	1	1	1	1	yes	AKEQFNGIFVPNSNI
93	2	SLC25A33	EJ2464332	E3a_E4a	KnownJunction	-23.32	22.32	0.00	0	1	1	1	1	1	yes	LVGVAPSRAVYFACY
94	1	GDPD1	EJ1911195	E5a_E6a	KnownJunction	-24.03	23.03	0.00	0	1	1	2	2	2	yes	NNNVLIKKVSELVKR
95	2	GDPD1	ER115878	ER6a	Exon	-10.76	28.28	1.72	N/A	1	1	2	2	2	yes	YNREHLTVWGNANYE
96	1	GABRD	EJ2800482	E8a_E9a	KnownJunction	-23.95	22.95	0.00	0	1	1	1	1	1	yes	KVSRPRAEMDVRNAI
97	2	GABRD	ER147253	ER8a	Exon	-8.28	28.07	2.51	N/A	0	1	1	1	1	yes	DVYFWICYVFVFAAL
98	1	CHGA	EJ593892	E2a_E3a	KnownJunction	-23.81	22.81	0.00	0	1	1	2	2	2	yes	PMNKGDTEVMKCIVE
99	2	CHGA	ER70687	ER7a	Exon	-18.64	49.96	1.73	N/A	1	1	2	2	2	yes	SKMDQLAKELTAEKR
100	1	PGM2L1	EJ2302111	E8a_E9a	KnownJunction	-23.57	62.05	1.68	0	1	2	1	1	1	yes	AAAELQENGCWKVFT