Summary page for comparison: 'Amygdala_mRNA_vs_Frontal_mRNA' (HS1811_vs_HS1810) - Project: AllenBrain


Download complete candidate list as tab delimited text file: Amygdala_mRNA_vs_Frontal_mRNA.txt


Summary of Differential (DE) and Alternative Expression (AE) for all gene loci:

Total Candidate Genes: 8,873 (of 49,867 possible genes)

DE Genes: 4,212

AE Genes: 7,176

Alternative Exon Usage (EU) Genes: 5,784

Alernative Exon Skipping (ES) Genes: 1,045

Alternative Exon Boundary (AB) Genes: 3,767

Intron Retention (IR) Genes: 101

Cryptic Exon (CE) Genes: 466


Candidate Differential AND Alternative Expression Genes

The following table lists candidate genes ranked according to 'Score'. Only the top 250 genes appear in each list. For a complete list download the results file provided above. To appear in this list, a 'candidate gene' must be differentially expressed at the gene level (DE) or contain at least one alternatively expressed (AE) feature. The 'Score' is based on the fold change as well as other factors for AE events (multiple features supporting the same event, reciprocity, etc.). The 'Event Type' indicates whether the gene was differentially expressed ('DE') or alternatively expressed 'AE'. 'Direction' refers to the direction (+ve/-ve) of the fold change. 'Gain' (+ve) indicates higher expression in library A than library B and vice versa. 'FC' stands for fold change. '# AE Events' is the number of significant alternative expression events observed for each gene. 'AE Codes' refers to various alternative expression subtypes (listed above). The 'Top Feature' is the most significant AE event observed for an AE gene. 'Adjacency' refers to the number of consecutive AE features (potentially supporting the same isoform). 'Adjacency %' refers to the percent of all AE events for a gene that were adjacent to each other.


RankOverall
Rank
ScoreNameGene
Type
Trans.
Count
Exon
Count
Event
Type
DirectionFC# AE
Events
AE CodesTop FeatureAdjacency
%
117.42KATNAL1'protein_coding'621AEGain18.769EU E6a_E7a75.00
227.22LCA5'protein_coding'414AEGain24.004EU AB CE I4_SR30
337.08ENTPD4'protein_coding'317AEGain15.213EU E5a_E6a50.00
446.92PDE6B'protein_coding'1245AELoss-18.4717EU AB CE E13_Aa55.56
556.86GPR85'protein_coding'918AEGain22.695AB E2_Ab0
666.82PK4P'protein_coding'1868AELoss-9.613EU AB E27_Db0
776.69PVALB'protein_coding'715DELoss-40.913EU AB PVALB100.00
886.63GRIK2'protein_coding'1334AEGain17.2611EU ES AB CE E2a_E3a42.86
996.50WNK1'protein_coding'431AELoss-8.924EU ES E11a_E12a33.33
10106.43THRAP3'protein_coding'522AELoss-10.084EU AB E12_Aa0.00
11116.34ZEB2'protein_coding'2858AELoss-4.025EU AB E11_Aa100.00
12126.29TBP'protein_coding'618AELoss-22.996EU AB E7_Da50.00
13136.17ORAOV1'protein_coding'310AELoss-18.066EU ES E4a_E6a80.00
14146.14FAM40A'protein_coding'1042AEGain7.476EU AB E17_Db50.00
15156.11RGS7'protein_coding'1229AEGain5.8210EU ES AB E15_Aa37.50
16166.11HLA-DPB1'protein_coding'1124AELoss-10.064EU AB ER2b100.00
17176.09PDZRN3'protein_coding'1337AEGain9.005EU AB I7_SR6100.00
18186.04MCM3AP'protein_coding'1044AELoss-11.327EU AB E26_Aa0.00
19196.03ANKRD13C'protein_coding'519AEGain10.711AB E8_Aa0
20206.00C4orf41'protein_coding'334AEGain10.266EU E25a_E26a0.00
21215.97CHN2'protein_coding'2664AEGain12.8712EU ES AB CE ER13b33.33
22225.95NCKAP1'protein_coding'950AEGain8.352ES AB E25_Da0
23235.94PTPN4'protein_coding'1252AEGain7.725EU AB E17a_E18a33.33
24245.92KIRREL3'protein_coding'217AEGain11.132AB CE E15_Aa0
25255.91SCARF1'protein_coding'518AELoss-9.293EU E8a_E9a100.00
26265.87VWA5B2'protein_coding'932AELoss-18.5112EU AB E6_Aa25.00
27275.86EIF4ENIF1'protein_coding'1547AELoss-9.965EU ES AB E24_Aa66.67
28285.86POGZ'protein_coding'1848AEGain7.715EU AB E11_Ab100.00
29295.84TTC37'protein_coding'143AEGain10.208EU AB E10a_E11a0.00
30305.80DNAJC16'protein_coding'935AEGain6.315EU AB E14a_E15a50.00
31315.80TMEM63C'protein_coding'124AEGain12.007EU AB CE I1_AR20.00
32325.76CDH9'protein_coding'112AEGain4.565EU E2a_E3a75.00
33335.75TSR1'protein_coding'115AELoss-11.022AB E14_Da0
34345.75GRINL1A'protein_coding'2754AELoss-11.961AB E22_Db0
35355.75ATP8A2'protein_coding'650AEGain6.214EU AB ER19a0.00
36365.73LPHN3'protein_coding'226AEGain8.8110EU CE E11a_E12a71.43
37375.72UBE4A'protein_coding'223AEGain11.082EU AB E8a_E9a0
38385.72DOCK9'protein_coding'2397AELoss-12.2827EU ES AB E63a_E65b31.82
39395.70KTN1'protein_coding'1056AELoss-8.801ES E24a_E26a0
40405.69SR140'protein_coding'2478AEGain7.219EU AB E20_Da20.00
41415.68DAP3'protein_coding'2454AEGain9.238EU ES AB E4a_E7a50.00
42425.66SYT1'protein_coding'418AEGain5.198EU E1a_E2b28.57
43435.65PPARGC1A'protein_coding'113AEGain7.552EU E8a_E9a0.00
44445.64NKD2'protein_coding'315AELoss-11.131AB E10_Da0
45455.64ING3'protein_coding'722AEGain10.473EU E5a_E6a0.00
46465.63TBC1D23'protein_coding'935AEGain8.985EU E12a_E13a25.00
47475.61PGAP3'protein_coding'414AELoss-22.379EU AB E8_Da80.00
48485.60MBIP'protein_coding'413AEGain6.244EU AB E3_Da100.00
49495.58SCN2A'protein_coding'736AEGain6.314EU E15a_E16a33.33
50505.58ATG16L1'protein_coding'2060AEGain9.153EU AB E4a_E5a0.00
51515.56GLTSCR1'protein_coding'115AELoss-8.104EU E2a_E3a66.67
52525.55PARK2'protein_coding'1023AEGain6.004EU CE I12_AR13100.00
53535.54DLG1'protein_coding'3178AELoss-7.9622EU ES AB E30_Aa28.57
54545.53SGK1'protein_coding'1744AELoss-8.916EU AB E5_Da0.00
55555.52TRIM14'protein_coding'923AEGain11.113EU E4a_E5a50.00
56565.52HMG20A'protein_coding'315AEGain10.392EU AB E1_Ac0
57575.52CDH13'protein_coding'418AEGain7.452EU E10a_E11a0.00
58585.52DDIT3'protein_coding'14AELoss-11.913AB E3_Aa0
59595.51COL4A2'protein_coding'1167AELoss-9.948EU E19a_E20a14.29
60605.51ZFP30'protein_coding'413AEGain9.253EU AB ER5a0.00
61615.49LIFR'protein_coding'221AEGain11.657EU E9a_E10a50.00
62625.49UBR2'protein_coding'452AEGain8.313EU AB E32_Aa0
63635.49BDH1'protein_coding'1737AEGain9.477AB E12_Da0
64645.48SLC25A1'protein_coding'518AEGain15.752EU ER7b100.00
65655.48TASP1'protein_coding'822AEGain6.072EU E9a_E10a100.00
66665.47MEF2A'protein_coding'514AEGain7.714EU CE E10a_E11a50.00
67675.46RP5-894A10.2'processed_transcript'12AEGain12.062EU AB E1a_E2a0
68685.45KIAA0528'protein_coding'330AEGain9.447EU AB CE E8_Aa0.00
69695.44POMGNT1'protein_coding'1141AELoss-12.019EU AB E11_Ab25.00
70705.43TPM3'protein_coding'1649AELoss-12.045EU AB E13_Dd0.00
71715.42CACNA2D3'protein_coding'1363AEGain6.4421EU AB E25_Aa47.06
72725.42HSPA4L'protein_coding'221AEGain6.392EU E1a_E2a0.00
73735.42SCN1A'protein_coding'739AEGain5.161EU E12b_E13a0
74745.41AC022098.5'lincRNA'13AELoss-10.593EU AB E3_Aa0
75755.41SERHL2'protein_coding'1130AEGain9.473EU AB E9_Ac0
76765.41KIAA1199'protein_coding'536AEGain7.612EU E9a_E10a0.00
77775.41CBY1'protein_coding'1125AELoss-7.503EU AB E2_Da100.00
78785.40FER'protein_coding'222AEGain8.474EU E5a_E6a33.33
79795.39MAP3K7IP3'protein_coding'827AEGain7.844EU AB E10_Dd0.00
80805.39ADAM9'protein_coding'1038AEGain10.037EU AB ER1b0.00
81815.38ACTA2'protein_coding'717AELoss-9.132AB E5_Aa0
82825.38PAPLN'protein_coding'534AEGain7.981EU E4a_E5a0
83835.37YTHDF3'protein_coding'27AELoss-7.961AB E6_Aa0
84845.36PCLO'protein_coding'1446AEGain7.5811EU AB ER24a37.50
85855.36OXR1'protein_coding'1131AEGain6.236EU ES AB E8a_E9a0.00
86865.35GNA13'protein_coding'28AELoss-6.264EU AB E4_Da100.00
87875.35PRODH'protein_coding'1439AEGain10.685EU AB E2_Aa0
88885.35NPLOC4'protein_coding'219AELoss-10.843EU AB CE E12_Da0
89895.35KCNIP3'protein_coding'720AEGain7.487EU AB E12_Da0.00
90905.35RNASET2'protein_coding'1240AELoss-9.717EU ES AB E4a_E6a0.00
91915.34SRGAP3'protein_coding'2065AEGain7.449EU ES AB E15b_E16a0.00
92925.32NDST1'protein_coding'216AELoss-10.062EU AB E7_Db0
93935.32SLC25A26'protein_coding'824AEGain8.007EU AB E5_Aa33.33
94945.32OPHN1'protein_coding'531AEGain9.0110EU AB CE E2_Da50.00
95955.31INTU'protein_coding'217AEGain7.662EU E2a_E3a0.00
96965.31RALGPS1'protein_coding'1849AEGain9.857EU AB E26a_E27a0.00
97975.30SLC43A2'protein_coding'318AELoss-16.677EU ES E10a_E11a83.33
98985.30HEPH'protein_coding'1340AEGain9.692EU E8a_E9a0.00
99995.29PNPLA7'protein_coding'1153AEGain6.688EU AB CE E8_Ab100.00
1001005.28BRAF'protein_coding'528AELoss-7.375EU E19a_E20a25.00
1011015.27HEXB'protein_coding'114AELoss-20.1610EU AB ER5a100.00
1021025.26ARFRP1'protein_coding'816AELoss-10.616EU ES AB CE E5_Da0.00
1031035.26FLNB'protein_coding'1668AELoss-6.256EU AB E17_Da25.00
1041045.25CHUK'protein_coding'428AELoss-7.263EU AB E18_Db100.00
1051055.25MED15'protein_coding'3589AELoss-12.856EU AB E17_Aa33.33
1061065.25SH3PXD2A'protein_coding'422AELoss-5.714EU AB CE E16_Da0
1071075.25KIAA0090'protein_coding'1656AEGain7.875EU AB E15_Aa50.00
1081085.25CLASP2'protein_coding'2590AEGain7.2915EU AB E11_Da20.00
1091095.25LRRN3'protein_coding'511AEGain4.971AB E3_Aa0
1101105.24NRD1'protein_coding'1455AELoss-20.1511EU AB E33_Aa57.14
1111115.24TSNARE1'protein_coding'317AELoss-8.341EU E1a_E2a0
1121125.23NAA25'protein_coding'225AEGain7.115EU E15a_E16a75.00
1131135.23HUS1'protein_coding'1131AEGain7.525EU AB E1_Af100.00
1141145.23GPAM'protein_coding'531AEGain8.382EU AB E21a_E21b0
1151155.23ENSA'protein_coding'1022AELoss-8.818EU AB IR E6_Aa0.00
1161165.23MINA'protein_coding'514AEGain9.792EU CE E3a_E4a0
1171175.23MTMR11'protein_coding'1440AEGain8.636EU AB IR E11a_E12a0.00
1181185.22ACSS2'protein_coding'2770AELoss-6.194EU AB E23_Ab0.00
1191195.22PHF10'protein_coding'721AELoss-7.634EU AB E10_Aa0
1201205.21ZNF483'protein_coding'310AEGain9.361EU ER1b0
1211215.21ABCD4'protein_coding'1956AELoss-10.8911EU ES AB E8a_E8b0.00
1221225.21ITGA3'protein_coding'226AELoss-18.2111EU E20a_E21a50.00
1231235.21FOXN2'protein_coding'414AEGain15.005EU AB ER3c100.00
1241245.20SFT2D1'protein_coding'721AEGain10.112ES AB E8_Dc0
1251255.20MRPL16'protein_coding'14AEGain7.111AB E2_Aa0
1261265.20DCTN1'protein_coding'3092AELoss-7.5015EU ES AB E30e_E31b30.77
1271275.20FAM91A1'protein_coding'228AEGain7.953EU ES E13a_E14a0.00
1281285.20MTMR1'protein_coding'1641AEGain6.876EU AB E17_Ab0.00
1291295.20RASGRF1'protein_coding'433AEGain4.762EU AB E2_Aa0
1301305.19BMS1'protein_coding'123AEGain10.764EU E2a_E3a33.33
1311315.19ZNF248'protein_coding'720AEGain5.353EU AB ER3a100.00
1321325.17LRCH4'protein_coding'1348AELoss-10.2712EU AB E6_Ag40.00
1331335.16ZNF655'protein_coding'2661AEGain7.617EU AB E4_Da50.00
1341345.16PHF20'protein_coding'1853AELoss-10.819EU ES ER8b37.50
1351355.15MICALL1'protein_coding'731AELoss-5.793EU AB E11_Aa100.00
1361365.15STXBP5L'protein_coding'840AEGain6.0011EU AB E26_Da33.33
1371375.14FRY'protein_coding'1190AEGain8.9512EU AB E37a_E38a33.33
1381385.14CAMTA1'protein_coding'1961AEGain4.733EU AB ER1c0.00
1391395.14CNTN1'protein_coding'324AELoss-14.3610EU CE E7a_E8a33.33
1401405.14INPP5F'protein_coding'631AEGain4.793EU AB E12a_E13a0.00
1411415.13AGFG1'protein_coding'932AEGain7.604EU AB E15_Aa0.00
1421425.13PLRG1'protein_coding'216AEGain5.654EU CE I5_AR2100.00
1431435.12TRMU'protein_coding'1939AELoss-9.663EU AB E12_Ad0.00
1441445.12EIF2C1'protein_coding'221AELoss-7.3210EU AB E3_Aa57.14
1451455.12AC018737.4'processed_transcript'513AELoss-4.382AB E5_Aa0
1461465.12EXOC2'protein_coding'434AEGain11.295EU E17a_E18a75.00
1471475.12C17orf62'protein_coding'413AELoss-8.523EU AB E6_Aa0
1481485.12NT5DC2'protein_coding'1743AELoss-6.823EU AB E6_Aa100.00
1491495.11LZTS1'protein_coding'49AELoss-10.233EU AB E2_Ab0.00
1501505.11DNM3'protein_coding'833AEGain7.2018EU ES AB E19a_E22a60.00
1511515.11RP11-280F2.1'processed_transcript'416AEGain7.342EU AB E6_Da0
1521525.11FAM71F2'protein_coding'717AELoss-10.115EU AB E4_Da0.00
1531535.10ITPR3'protein_coding'158AELoss-7.7510EU AB E54_Da40.00
1541545.10TMOD2'protein_coding'212AEGain6.375EU E2a_E3a75.00
1551555.09EPHA4'protein_coding'1548AEGain4.364EU ER9a0.00
1561565.09KIAA0652'protein_coding'623AELoss-8.985EU E12a_E13a50.00
1571575.09BTRC'protein_coding'729AEGain6.652EU AB E6_Da0
1581585.09SETD3'protein_coding'827AELoss-8.312EU AB E14_Aa0
1591595.08XRCC1'protein_coding'220AELoss-10.032AB E13_Aa0
1601605.08LUZP1'protein_coding'614AEGain6.131AB E3_Da0
1611615.08CWF19L2'protein_coding'526AELoss-8.173EU E7a_E8a0.00
1621625.08PPP2R3A'protein_coding'625AELoss-7.741EU E5a_E6a0
1631635.07CSNK1D'protein_coding'411AELoss-9.941AB E9_Aa0
1641645.07SORBS1'protein_coding'2460AEGain6.928EU ES AB CE E19_Da0.00
1651655.07CDK10'protein_coding'624AELoss-13.0110EU AB E2a_E3a66.67
1661665.07FAM164A'protein_coding'211AEGain5.071EU ER1a0
1671675.07CYFIP1'protein_coding'336AEGain6.766EU AB E18_Da0.00
1681685.06VPS16A'protein_coding'938AEGain6.976EU AB E22_Aa0.00
1691695.06GNL1'protein_coding'1027AELoss-7.732AB E8_Db0
1701705.06NUP93'protein_coding'122AELoss-10.007EU AB E10a_E11a40.00
1711715.06ARFGEF2'protein_coding'241AEGain5.086EU AB E27a_E28a25.00
1721725.05MDM4'protein_coding'1358AELoss-8.5710EU AB E35_Aa50.00
1731735.04FAM104B'protein_coding'717AEGain8.311AB E5_Dc0
1741745.04HP1BP3'protein_coding'1946AEGain8.657EU AB ER1b0.00
1751755.04PET112L'protein_coding'113AEGain6.901AB E8_Da0
1761765.04PSMB10'protein_coding'211AELoss-8.753EU AB E6_Aa0
1771775.04CTAGE5'protein_coding'736AEGain6.483EU AB E5a_E6a100.00
1781785.03ZDHHC16'protein_coding'2051AEGain7.4710EU AB CE E2_Aa0.00
1791795.02PTPRS'protein_coding'738AEGain7.114EU ES ER6a0.00
1801805.02DYNC2LI1'protein_coding'1132AEGain5.6211EU AB ER2a25.00
1811815.02CACNB2'protein_coding'1333AEGain5.313EU E17a_E18a0.00
1821825.02NRP1'protein_coding'1841AEGain7.153EU AB E14_Da0.00
1831835.02SMG1'protein_coding'264AEGain9.1014EU AB E42a_E43a33.33
1841845.01TOX'protein_coding'211AEGain4.294EU CE I1_SR10.00
1851855.01TTC28'protein_coding'938AELoss-9.604EU AB E23a_E24a0.00
1861865.01CPSF2'protein_coding'218AEGain7.194EU ER5b66.67
1871875.01MATN2'protein_coding'322AELoss-5.737EU AB CE E2a_E3a33.33
1881885.01FRMD8'protein_coding'311AELoss-6.461AB E10_Da0
1891895.01BRD8'protein_coding'2367AELoss-16.947EU AB E13_Ab0.00
1901905.00ARAF'protein_coding'628AELoss-6.572AB E2_Aa0
1911915.00NARG1'protein_coding'733AEGain5.004EU AB E21_Da100.00
1921925.00CLTA'protein_coding'926AELoss-6.897EU ES E5a_E7a100.00
1931934.99TRAPPC9'protein_coding'427AELoss-9.143EU CE E3a_E4a0.00
1941944.99WDR60'protein_coding'635AELoss-9.305EU ES AB E13_Da0.00
1951954.99SYN2'protein_coding'932AEGain5.712EU AB E7_Da0
1961964.99KANK3'protein_coding'316AELoss-6.901AB E12_Aa0
1971974.99PODXL2'protein_coding'211AEGain6.522EU AB ER8b0
1981984.99DMXL1'protein_coding'143AEGain6.264EU AB ER19a50.00
1991994.98NLGN1'protein_coding'1337AEGain6.695EU AB CE ER14c0.00
2002004.98AGTPBP1'protein_coding'1141AELoss-8.6011EU AB E27_Aa16.67
2012014.98SFRS2IP'protein_coding'929AELoss-8.694EU ES E9a_E11a33.33
2022024.98VEGFB'protein_coding'28AELoss-7.361ES E5a_E7a0
2032034.98TMBIM1'protein_coding'2253AELoss-8.639EU AB E11_Dd50.00
2042044.98NCSTN'protein_coding'1848AEGain9.844EU ES AB E5a_E6b0.00
2052054.97FMNL2'protein_coding'743AELoss-7.734EU AB E26a_E27a0.00
2062064.97AP1GBP1'protein_coding'732AEGain8.548EU ES AB CE ENST0000034561540.00
2072074.97C17orf85'protein_coding'315AELoss-6.452EU ES E7a_E9b0.00
2082084.97DDR1'protein_coding'2556AELoss-6.833EU ES AB E9a_E11b0.00
2092094.97RBMX'protein_coding'618AELoss-6.851AB E11_Aa0
2102104.96ADRBK1'protein_coding'222AEGain6.634EU E12a_E13a0.00
2112114.96RASAL1'protein_coding'325AELoss-6.584EU AB E14_Aa0
2122124.96CADM1'protein_coding'314AEGain6.401CE I1_AR470
2132134.95TMUB1'protein_coding'715AEGain9.293EU AB ER5d0
2142144.95GON4L'protein_coding'2477AEGain8.5212EU AB E15a_E15c20.00
2152154.94MBD4'protein_coding'310AELoss-6.993EU AB E7_Da0
2162164.94SEZ6L'protein_coding'1131AEGain7.021AB E2_Aa0
2172174.94JHDM1D'protein_coding'427AELoss-6.762EU E13a_E14a100.00
2182184.93GOLGA2'protein_coding'1248AELoss-5.754EU AB E9_Da100.00
2192194.93PDCD10'protein_coding'2156AELoss-16.9513EU ES AB ER2g80.00
2202204.93CUGBP2'protein_coding'1026AEGain6.314AB CE E10_Aa0
2212214.93USF1'protein_coding'926AEGain7.822AB E10_Dc0
2222224.93CCDC97'protein_coding'15AELoss-6.621AB E4_Da0
2232234.92ZMAT1'protein_coding'720AEGain8.351AB E7_Da0
2242244.92PTS'protein_coding'16AEGain7.321I2_SR10
2252254.92G2E3'protein_coding'217AEGain6.321EU ER4a0
2262264.92SF4'protein_coding'216AEGain7.893EU AB E7_Aa0.00
2272274.92ANKRD6'protein_coding'932AEGain7.004EU E13a_E14a33.33
2282284.91SLIT2'protein_coding'239AEGain7.561EU E12a_E13a0
2292294.91C18orf8'protein_coding'120AEGain7.668EU AB IR CE E19_Da0
2302304.91SCPEP1'protein_coding'215AEGain6.829EU ES IR E9a_E11a50.00
2312314.91MYOM2'protein_coding'137AEGain6.5911EU ER8a70.00
2322324.91MAFK'protein_coding'38AELoss-2.991ES E2a_E4a0
2332334.91PES1'protein_coding'1344AELoss-7.171EU ER17c0
2342344.90MAML3'protein_coding'411AELoss-8.341EU E6a_E7a0
2352354.90SLC35A5'protein_coding'722AEGain6.112EU AB E1_Da0
2362364.90CENPT'protein_coding'418AELoss-16.723EU AB E9_Aa0
2372374.89PDE2A'protein_coding'1156AEGain6.455EU ES AB IR E11a_E15a0.00
2382384.88SBNO1'protein_coding'435AEGain7.7911EU E2b_E3a40.00
2392394.88CNTNAP4'protein_coding'1039AELoss-6.254EU ES AB E19_Da50.00
2402404.88AKT2'protein_coding'2672AEGain9.0011EU AB IR CE I6_AR10
2412414.88LDLR'protein_coding'218AELoss-7.501AB E14_Da0
2422424.87NRIP1'protein_coding'48AEGain4.792EU ES E2a_E5a100.00
2432434.87DDI2'protein_coding'416AEGain7.441ES E4a_E5a0
2442444.87C6orf130'protein_coding'1640AELoss-6.853EU ES AB E9_Di0.00
2452454.87RPRD1B'protein_coding'617AEGain8.343EU AB E6b_E7a0
2462464.86MMP24'protein_coding'19AEGain7.633EU AB E5_Aa0
2472474.85FBXL2'protein_coding'2164AEGain5.907EU AB IR E14_Ac0
2482484.85RP4-788L13.1'protein_coding'412AEGain5.425EU AB E3a_E4b33.33
2492494.85CAMSAP1'protein_coding'1342AELoss-6.1410EU ES AB E6_Da33.33
2502504.85AP002478.3'protein_coding'13AELoss-8.751AB E2_Aa0
2512514.85C4orf12'processed_transcript'39AEGain6.401AB E4_Da0


Candidate Alternative Expression Genes

The following table lists candidate genes ranked according to 'Score'. Only the top 250 genes appear in each list. For a complete list download the results file provided above. To appear in this list, a 'candidate gene' must be differentially expressed at the gene level (DE) or contain at least one alternatively expressed (AE) feature. The 'Score' is based on the fold change as well as other factors for AE events (multiple features supporting the same event, reciprocity, etc.). The 'Event Type' indicates whether the gene was differentially expressed ('DE') or alternatively expressed 'AE'. 'Direction' refers to the direction (+ve/-ve) of the fold change. 'Gain' (+ve) indicates higher expression in library A than library B and vice versa. 'FC' stands for fold change. '# AE Events' is the number of significant alternative expression events observed for each gene. 'AE Codes' refers to various alternative expression subtypes (listed above). The 'Top Feature' is the most significant AE event observed for an AE gene. 'Adjacency' refers to the number of consecutive AE features (potentially supporting the same isoform). 'Adjacency %' refers to the percent of all AE events for a gene that were adjacent to each other.


RankOverall
Rank
ScoreNameGene
Type
Trans.
Count
Exon
Count
Event
Type
DirectionFC# AE
Events
AE CodesTop FeatureAdjacency
%
117.42KATNAL1'protein_coding'621AEGain18.769EU E6a_E7a75.00
227.22LCA5'protein_coding'414AEGain24.004EU AB CE I4_SR30
337.08ENTPD4'protein_coding'317AEGain15.213EU E5a_E6a50.00
446.92PDE6B'protein_coding'1245AELoss-18.4717EU AB CE E13_Aa55.56
556.86GPR85'protein_coding'918AEGain22.695AB E2_Ab0
666.82PK4P'protein_coding'1868AELoss-9.613EU AB E27_Db0
776.69PVALB'protein_coding'715DELoss-40.913EU AB PVALB100.00
886.63GRIK2'protein_coding'1334AEGain17.2611EU ES AB CE E2a_E3a42.86
996.50WNK1'protein_coding'431AELoss-8.924EU ES E11a_E12a33.33
10106.43THRAP3'protein_coding'522AELoss-10.084EU AB E12_Aa0.00
11116.34ZEB2'protein_coding'2858AELoss-4.025EU AB E11_Aa100.00
12126.29TBP'protein_coding'618AELoss-22.996EU AB E7_Da50.00
13136.17ORAOV1'protein_coding'310AELoss-18.066EU ES E4a_E6a80.00
14146.14FAM40A'protein_coding'1042AEGain7.476EU AB E17_Db50.00
15156.11RGS7'protein_coding'1229AEGain5.8210EU ES AB E15_Aa37.50
16166.11HLA-DPB1'protein_coding'1124AELoss-10.064EU AB ER2b100.00
17176.09PDZRN3'protein_coding'1337AEGain9.005EU AB I7_SR6100.00
18186.04MCM3AP'protein_coding'1044AELoss-11.327EU AB E26_Aa0.00
19196.03ANKRD13C'protein_coding'519AEGain10.711AB E8_Aa0
20206.00C4orf41'protein_coding'334AEGain10.266EU E25a_E26a0.00
21215.97CHN2'protein_coding'2664AEGain12.8712EU ES AB CE ER13b33.33
22225.95NCKAP1'protein_coding'950AEGain8.352ES AB E25_Da0
23235.94PTPN4'protein_coding'1252AEGain7.725EU AB E17a_E18a33.33
24245.92KIRREL3'protein_coding'217AEGain11.132AB CE E15_Aa0
25255.91SCARF1'protein_coding'518AELoss-9.293EU E8a_E9a100.00
26265.87VWA5B2'protein_coding'932AELoss-18.5112EU AB E6_Aa25.00
27275.86EIF4ENIF1'protein_coding'1547AELoss-9.965EU ES AB E24_Aa66.67
28285.86POGZ'protein_coding'1848AEGain7.715EU AB E11_Ab100.00
29295.84TTC37'protein_coding'143AEGain10.208EU AB E10a_E11a0.00
30305.80DNAJC16'protein_coding'935AEGain6.315EU AB E14a_E15a50.00
31315.80TMEM63C'protein_coding'124AEGain12.007EU AB CE I1_AR20.00
32325.76CDH9'protein_coding'112AEGain4.565EU E2a_E3a75.00
33335.75TSR1'protein_coding'115AELoss-11.022AB E14_Da0
34345.75GRINL1A'protein_coding'2754AELoss-11.961AB E22_Db0
35355.75ATP8A2'protein_coding'650AEGain6.214EU AB ER19a0.00
36365.73LPHN3'protein_coding'226AEGain8.8110EU CE E11a_E12a71.43
37375.72UBE4A'protein_coding'223AEGain11.082EU AB E8a_E9a0
38385.72DOCK9'protein_coding'2397AELoss-12.2827EU ES AB E63a_E65b31.82
39395.70KTN1'protein_coding'1056AELoss-8.801ES E24a_E26a0
40405.69SR140'protein_coding'2478AEGain7.219EU AB E20_Da20.00
41415.68DAP3'protein_coding'2454AEGain9.238EU ES AB E4a_E7a50.00
42425.66SYT1'protein_coding'418AEGain5.198EU E1a_E2b28.57
43435.65PPARGC1A'protein_coding'113AEGain7.552EU E8a_E9a0.00
44445.64NKD2'protein_coding'315AELoss-11.131AB E10_Da0
45455.64ING3'protein_coding'722AEGain10.473EU E5a_E6a0.00
46465.63TBC1D23'protein_coding'935AEGain8.985EU E12a_E13a25.00
47475.61PGAP3'protein_coding'414AELoss-22.379EU AB E8_Da80.00
48485.60MBIP'protein_coding'413AEGain6.244EU AB E3_Da100.00
49495.58SCN2A'protein_coding'736AEGain6.314EU E15a_E16a33.33
50505.58ATG16L1'protein_coding'2060AEGain9.153EU AB E4a_E5a0.00
51515.56GLTSCR1'protein_coding'115AELoss-8.104EU E2a_E3a66.67
52525.55PARK2'protein_coding'1023AEGain6.004EU CE I12_AR13100.00
53535.54DLG1'protein_coding'3178AELoss-7.9622EU ES AB E30_Aa28.57
54545.53SGK1'protein_coding'1744AELoss-8.916EU AB E5_Da0.00
55555.52TRIM14'protein_coding'923AEGain11.113EU E4a_E5a50.00
56565.52HMG20A'protein_coding'315AEGain10.392EU AB E1_Ac0
57575.52CDH13'protein_coding'418AEGain7.452EU E10a_E11a0.00
58585.52DDIT3'protein_coding'14AELoss-11.913AB E3_Aa0
59595.51COL4A2'protein_coding'1167AELoss-9.948EU E19a_E20a14.29
60605.51ZFP30'protein_coding'413AEGain9.253EU AB ER5a0.00
61615.49LIFR'protein_coding'221AEGain11.657EU E9a_E10a50.00
62625.49UBR2'protein_coding'452AEGain8.313EU AB E32_Aa0
63635.49BDH1'protein_coding'1737AEGain9.477AB E12_Da0
64645.48SLC25A1'protein_coding'518AEGain15.752EU ER7b100.00
65655.48TASP1'protein_coding'822AEGain6.072EU E9a_E10a100.00
66665.47MEF2A'protein_coding'514AEGain7.714EU CE E10a_E11a50.00
67675.46RP5-894A10.2'processed_transcript'12AEGain12.062EU AB E1a_E2a0
68685.45KIAA0528'protein_coding'330AEGain9.447EU AB CE E8_Aa0.00
69695.44POMGNT1'protein_coding'1141AELoss-12.019EU AB E11_Ab25.00
70705.43TPM3'protein_coding'1649AELoss-12.045EU AB E13_Dd0.00
71715.42CACNA2D3'protein_coding'1363AEGain6.4421EU AB E25_Aa47.06
72725.42HSPA4L'protein_coding'221AEGain6.392EU E1a_E2a0.00
73735.42SCN1A'protein_coding'739AEGain5.161EU E12b_E13a0
74745.41AC022098.5'lincRNA'13AELoss-10.593EU AB E3_Aa0
75755.41SERHL2'protein_coding'1130AEGain9.473EU AB E9_Ac0
76765.41KIAA1199'protein_coding'536AEGain7.612EU E9a_E10a0.00
77775.41CBY1'protein_coding'1125AELoss-7.503EU AB E2_Da100.00
78785.40FER'protein_coding'222AEGain8.474EU E5a_E6a33.33
79795.39MAP3K7IP3'protein_coding'827AEGain7.844EU AB E10_Dd0.00
80805.39ADAM9'protein_coding'1038AEGain10.037EU AB ER1b0.00
81815.38ACTA2'protein_coding'717AELoss-9.132AB E5_Aa0
82825.38PAPLN'protein_coding'534AEGain7.981EU E4a_E5a0
83835.37YTHDF3'protein_coding'27AELoss-7.961AB E6_Aa0
84845.36PCLO'protein_coding'1446AEGain7.5811EU AB ER24a37.50
85855.36OXR1'protein_coding'1131AEGain6.236EU ES AB E8a_E9a0.00
86865.35GNA13'protein_coding'28AELoss-6.264EU AB E4_Da100.00
87875.35PRODH'protein_coding'1439AEGain10.685EU AB E2_Aa0
88885.35NPLOC4'protein_coding'219AELoss-10.843EU AB CE E12_Da0
89895.35KCNIP3'protein_coding'720AEGain7.487EU AB E12_Da0.00
90905.35RNASET2'protein_coding'1240AELoss-9.717EU ES AB E4a_E6a0.00
91915.34SRGAP3'protein_coding'2065AEGain7.449EU ES AB E15b_E16a0.00
92925.32NDST1'protein_coding'216AELoss-10.062EU AB E7_Db0
93935.32SLC25A26'protein_coding'824AEGain8.007EU AB E5_Aa33.33
94945.32OPHN1'protein_coding'531AEGain9.0110EU AB CE E2_Da50.00
95955.31INTU'protein_coding'217AEGain7.662EU E2a_E3a0.00
96965.31RALGPS1'protein_coding'1849AEGain9.857EU AB E26a_E27a0.00
97975.30SLC43A2'protein_coding'318AELoss-16.677EU ES E10a_E11a83.33
98985.30HEPH'protein_coding'1340AEGain9.692EU E8a_E9a0.00
99995.29PNPLA7'protein_coding'1153AEGain6.688EU AB CE E8_Ab100.00
1001005.28BRAF'protein_coding'528AELoss-7.375EU E19a_E20a25.00
1011015.27HEXB'protein_coding'114AELoss-20.1610EU AB ER5a100.00
1021025.26ARFRP1'protein_coding'816AELoss-10.616EU ES AB CE E5_Da0.00
1031035.26FLNB'protein_coding'1668AELoss-6.256EU AB E17_Da25.00
1041045.25CHUK'protein_coding'428AELoss-7.263EU AB E18_Db100.00
1051055.25MED15'protein_coding'3589AELoss-12.856EU AB E17_Aa33.33
1061065.25SH3PXD2A'protein_coding'422AELoss-5.714EU AB CE E16_Da0
1071075.25KIAA0090'protein_coding'1656AEGain7.875EU AB E15_Aa50.00
1081085.25CLASP2'protein_coding'2590AEGain7.2915EU AB E11_Da20.00
1091095.25LRRN3'protein_coding'511AEGain4.971AB E3_Aa0
1101105.24NRD1'protein_coding'1455AELoss-20.1511EU AB E33_Aa57.14
1111115.24TSNARE1'protein_coding'317AELoss-8.341EU E1a_E2a0
1121125.23NAA25'protein_coding'225AEGain7.115EU E15a_E16a75.00
1131135.23HUS1'protein_coding'1131AEGain7.525EU AB E1_Af100.00
1141145.23GPAM'protein_coding'531AEGain8.382EU AB E21a_E21b0
1151155.23ENSA'protein_coding'1022AELoss-8.818EU AB IR E6_Aa0.00
1161165.23MINA'protein_coding'514AEGain9.792EU CE E3a_E4a0
1171175.23MTMR11'protein_coding'1440AEGain8.636EU AB IR E11a_E12a0.00
1181185.22ACSS2'protein_coding'2770AELoss-6.194EU AB E23_Ab0.00
1191195.22PHF10'protein_coding'721AELoss-7.634EU AB E10_Aa0
1201205.21ZNF483'protein_coding'310AEGain9.361EU ER1b0
1211215.21ABCD4'protein_coding'1956AELoss-10.8911EU ES AB E8a_E8b0.00
1221225.21ITGA3'protein_coding'226AELoss-18.2111EU E20a_E21a50.00
1231235.21FOXN2'protein_coding'414AEGain15.005EU AB ER3c100.00
1241245.20SFT2D1'protein_coding'721AEGain10.112ES AB E8_Dc0
1251255.20MRPL16'protein_coding'14AEGain7.111AB E2_Aa0
1261265.20DCTN1'protein_coding'3092AELoss-7.5015EU ES AB E30e_E31b30.77
1271275.20FAM91A1'protein_coding'228AEGain7.953EU ES E13a_E14a0.00
1281285.20MTMR1'protein_coding'1641AEGain6.876EU AB E17_Ab0.00
1291295.20RASGRF1'protein_coding'433AEGain4.762EU AB E2_Aa0
1301305.19BMS1'protein_coding'123AEGain10.764EU E2a_E3a33.33
1311315.19ZNF248'protein_coding'720AEGain5.353EU AB ER3a100.00
1321325.17LRCH4'protein_coding'1348AELoss-10.2712EU AB E6_Ag40.00
1331335.16ZNF655'protein_coding'2661AEGain7.617EU AB E4_Da50.00
1341345.16PHF20'protein_coding'1853AELoss-10.819EU ES ER8b37.50
1351355.15MICALL1'protein_coding'731AELoss-5.793EU AB E11_Aa100.00
1361365.15STXBP5L'protein_coding'840AEGain6.0011EU AB E26_Da33.33
1371375.14FRY'protein_coding'1190AEGain8.9512EU AB E37a_E38a33.33
1381385.14CAMTA1'protein_coding'1961AEGain4.733EU AB ER1c0.00
1391395.14CNTN1'protein_coding'324AELoss-14.3610EU CE E7a_E8a33.33
1401405.14INPP5F'protein_coding'631AEGain4.793EU AB E12a_E13a0.00
1411415.13AGFG1'protein_coding'932AEGain7.604EU AB E15_Aa0.00
1421425.13PLRG1'protein_coding'216AEGain5.654EU CE I5_AR2100.00
1431435.12TRMU'protein_coding'1939AELoss-9.663EU AB E12_Ad0.00
1441445.12EIF2C1'protein_coding'221AELoss-7.3210EU AB E3_Aa57.14
1451455.12AC018737.4'processed_transcript'513AELoss-4.382AB E5_Aa0
1461465.12EXOC2'protein_coding'434AEGain11.295EU E17a_E18a75.00
1471475.12C17orf62'protein_coding'413AELoss-8.523EU AB E6_Aa0
1481485.12NT5DC2'protein_coding'1743AELoss-6.823EU AB E6_Aa100.00
1491495.11LZTS1'protein_coding'49AELoss-10.233EU AB E2_Ab0.00
1501505.11DNM3'protein_coding'833AEGain7.2018EU ES AB E19a_E22a60.00
1511515.11RP11-280F2.1'processed_transcript'416AEGain7.342EU AB E6_Da0
1521525.11FAM71F2'protein_coding'717AELoss-10.115EU AB E4_Da0.00
1531535.10ITPR3'protein_coding'158AELoss-7.7510EU AB E54_Da40.00
1541545.10TMOD2'protein_coding'212AEGain6.375EU E2a_E3a75.00
1551555.09EPHA4'protein_coding'1548AEGain4.364EU ER9a0.00
1561565.09KIAA0652'protein_coding'623AELoss-8.985EU E12a_E13a50.00
1571575.09BTRC'protein_coding'729AEGain6.652EU AB E6_Da0
1581585.09SETD3'protein_coding'827AELoss-8.312EU AB E14_Aa0
1591595.08XRCC1'protein_coding'220AELoss-10.032AB E13_Aa0
1601605.08LUZP1'protein_coding'614AEGain6.131AB E3_Da0
1611615.08CWF19L2'protein_coding'526AELoss-8.173EU E7a_E8a0.00
1621625.08PPP2R3A'protein_coding'625AELoss-7.741EU E5a_E6a0
1631635.07CSNK1D'protein_coding'411AELoss-9.941AB E9_Aa0
1641645.07SORBS1'protein_coding'2460AEGain6.928EU ES AB CE E19_Da0.00
1651655.07CDK10'protein_coding'624AELoss-13.0110EU AB E2a_E3a66.67
1661665.07FAM164A'protein_coding'211AEGain5.071EU ER1a0
1671675.07CYFIP1'protein_coding'336AEGain6.766EU AB E18_Da0.00
1681685.06VPS16A'protein_coding'938AEGain6.976EU AB E22_Aa0.00
1691695.06GNL1'protein_coding'1027AELoss-7.732AB E8_Db0
1701705.06NUP93'protein_coding'122AELoss-10.007EU AB E10a_E11a40.00
1711715.06ARFGEF2'protein_coding'241AEGain5.086EU AB E27a_E28a25.00
1721725.05MDM4'protein_coding'1358AELoss-8.5710EU AB E35_Aa50.00
1731735.04FAM104B'protein_coding'717AEGain8.311AB E5_Dc0
1741745.04HP1BP3'protein_coding'1946AEGain8.657EU AB ER1b0.00
1751755.04PET112L'protein_coding'113AEGain6.901AB E8_Da0
1761765.04PSMB10'protein_coding'211AELoss-8.753EU AB E6_Aa0
1771775.04CTAGE5'protein_coding'736AEGain6.483EU AB E5a_E6a100.00
1781785.03ZDHHC16'protein_coding'2051AEGain7.4710EU AB CE E2_Aa0.00
1791795.02PTPRS'protein_coding'738AEGain7.114EU ES ER6a0.00
1801805.02DYNC2LI1'protein_coding'1132AEGain5.6211EU AB ER2a25.00
1811815.02CACNB2'protein_coding'1333AEGain5.313EU E17a_E18a0.00
1821825.02NRP1'protein_coding'1841AEGain7.153EU AB E14_Da0.00
1831835.02SMG1'protein_coding'264AEGain9.1014EU AB E42a_E43a33.33
1841845.01TOX'protein_coding'211AEGain4.294EU CE I1_SR10.00
1851855.01TTC28'protein_coding'938AELoss-9.604EU AB E23a_E24a0.00
1861865.01CPSF2'protein_coding'218AEGain7.194EU ER5b66.67
1871875.01MATN2'protein_coding'322AELoss-5.737EU AB CE E2a_E3a33.33
1881885.01FRMD8'protein_coding'311AELoss-6.461AB E10_Da0
1891895.01BRD8'protein_coding'2367AELoss-16.947EU AB E13_Ab0.00
1901905.00ARAF'protein_coding'628AELoss-6.572AB E2_Aa0
1911915.00NARG1'protein_coding'733AEGain5.004EU AB E21_Da100.00
1921925.00CLTA'protein_coding'926AELoss-6.897EU ES E5a_E7a100.00
1931934.99TRAPPC9'protein_coding'427AELoss-9.143EU CE E3a_E4a0.00
1941944.99WDR60'protein_coding'635AELoss-9.305EU ES AB E13_Da0.00
1951954.99SYN2'protein_coding'932AEGain5.712EU AB E7_Da0
1961964.99KANK3'protein_coding'316AELoss-6.901AB E12_Aa0
1971974.99PODXL2'protein_coding'211AEGain6.522EU AB ER8b0
1981984.99DMXL1'protein_coding'143AEGain6.264EU AB ER19a50.00
1991994.98NLGN1'protein_coding'1337AEGain6.695EU AB CE ER14c0.00
2002004.98AGTPBP1'protein_coding'1141AELoss-8.6011EU AB E27_Aa16.67
2012014.98SFRS2IP'protein_coding'929AELoss-8.694EU ES E9a_E11a33.33
2022024.98VEGFB'protein_coding'28AELoss-7.361ES E5a_E7a0
2032034.98TMBIM1'protein_coding'2253AELoss-8.639EU AB E11_Dd50.00
2042044.98NCSTN'protein_coding'1848AEGain9.844EU ES AB E5a_E6b0.00
2052054.97FMNL2'protein_coding'743AELoss-7.734EU AB E26a_E27a0.00
2062064.97AP1GBP1'protein_coding'732AEGain8.548EU ES AB CE ENST0000034561540.00
2072074.97C17orf85'protein_coding'315AELoss-6.452EU ES E7a_E9b0.00
2082084.97DDR1'protein_coding'2556AELoss-6.833EU ES AB E9a_E11b0.00
2092094.97RBMX'protein_coding'618AELoss-6.851AB E11_Aa0
2102104.96ADRBK1'protein_coding'222AEGain6.634EU E12a_E13a0.00
2112114.96RASAL1'protein_coding'325AELoss-6.584EU AB E14_Aa0
2122124.96CADM1'protein_coding'314AEGain6.401CE I1_AR470
2132134.95TMUB1'protein_coding'715AEGain9.293EU AB ER5d0
2142144.95GON4L'protein_coding'2477AEGain8.5212EU AB E15a_E15c20.00
2152154.94MBD4'protein_coding'310AELoss-6.993EU AB E7_Da0
2162164.94SEZ6L'protein_coding'1131AEGain7.021AB E2_Aa0
2172174.94JHDM1D'protein_coding'427AELoss-6.762EU E13a_E14a100.00
2182184.93GOLGA2'protein_coding'1248AELoss-5.754EU AB E9_Da100.00
2192194.93PDCD10'protein_coding'2156AELoss-16.9513EU ES AB ER2g80.00
2202204.93CUGBP2'protein_coding'1026AEGain6.314AB CE E10_Aa0
2212214.93USF1'protein_coding'926AEGain7.822AB E10_Dc0
2222224.93CCDC97'protein_coding'15AELoss-6.621AB E4_Da0
2232234.92ZMAT1'protein_coding'720AEGain8.351AB E7_Da0
2242244.92PTS'protein_coding'16AEGain7.321I2_SR10
2252254.92G2E3'protein_coding'217AEGain6.321EU ER4a0
2262264.92SF4'protein_coding'216AEGain7.893EU AB E7_Aa0.00
2272274.92ANKRD6'protein_coding'932AEGain7.004EU E13a_E14a33.33
2282284.91SLIT2'protein_coding'239AEGain7.561EU E12a_E13a0
2292294.91C18orf8'protein_coding'120AEGain7.668EU AB IR CE E19_Da0
2302304.91SCPEP1'protein_coding'215AEGain6.829EU ES IR E9a_E11a50.00
2312314.91MYOM2'protein_coding'137AEGain6.5911EU ER8a70.00
2322324.91MAFK'protein_coding'38AELoss-2.991ES E2a_E4a0
2332334.91PES1'protein_coding'1344AELoss-7.171EU ER17c0
2342344.90MAML3'protein_coding'411AELoss-8.341EU E6a_E7a0
2352354.90SLC35A5'protein_coding'722AEGain6.112EU AB E1_Da0
2362364.90CENPT'protein_coding'418AELoss-16.723EU AB E9_Aa0
2372374.89PDE2A'protein_coding'1156AEGain6.455EU ES AB IR E11a_E15a0.00
2382384.88SBNO1'protein_coding'435AEGain7.7911EU E2b_E3a40.00
2392394.88CNTNAP4'protein_coding'1039AELoss-6.254EU ES AB E19_Da50.00
2402404.88AKT2'protein_coding'2672AEGain9.0011EU AB IR CE I6_AR10
2412414.88LDLR'protein_coding'218AELoss-7.501AB E14_Da0
2422424.87NRIP1'protein_coding'48AEGain4.792EU ES E2a_E5a100.00
2432434.87DDI2'protein_coding'416AEGain7.441ES E4a_E5a0
2442444.87C6orf130'protein_coding'1640AELoss-6.853EU ES AB E9_Di0.00
2452454.87RPRD1B'protein_coding'617AEGain8.343EU AB E6b_E7a0
2462464.86MMP24'protein_coding'19AEGain7.633EU AB E5_Aa0
2472474.85FBXL2'protein_coding'2164AEGain5.907EU AB IR E14_Ac0
2482484.85RP4-788L13.1'protein_coding'412AEGain5.425EU AB E3a_E4b33.33
2492494.85CAMSAP1'protein_coding'1342AELoss-6.1410EU ES AB E6_Da33.33
2502504.85AP002478.3'protein_coding'13AELoss-8.751AB E2_Aa0
2512514.85C4orf12'processed_transcript'39AEGain6.401AB E4_Da0


Candidate Differential and Alternative Expression Genes (Gain ONLY)

The following table lists candidate genes ranked according to 'Score'. Only the top 250 genes appear in each list. For a complete list download the results file provided above. To appear in this list, a 'candidate gene' must be differentially expressed at the gene level (DE) or contain at least one alternatively expressed (AE) feature. The 'Score' is based on the fold change as well as other factors for AE events (multiple features supporting the same event, reciprocity, etc.). The 'Event Type' indicates whether the gene was differentially expressed ('DE') or alternatively expressed 'AE'. 'Direction' refers to the direction (+ve/-ve) of the fold change. 'Gain' (+ve) indicates higher expression in library A than library B and vice versa. 'FC' stands for fold change. '# AE Events' is the number of significant alternative expression events observed for each gene. 'AE Codes' refers to various alternative expression subtypes (listed above). The 'Top Feature' is the most significant AE event observed for an AE gene. 'Adjacency' refers to the number of consecutive AE features (potentially supporting the same isoform). 'Adjacency %' refers to the percent of all AE events for a gene that were adjacent to each other.


RankOverall
Rank
ScoreNameGene
Type
Trans.
Count
Exon
Count
Event
Type
DirectionFC# AE
Events
AE CodesTop FeatureAdjacency
%
117.42KATNAL1'protein_coding'621AEGain18.769EU E6a_E7a75.00
227.22LCA5'protein_coding'414AEGain24.004EU AB CE I4_SR30
337.08ENTPD4'protein_coding'317AEGain15.213EU E5a_E6a50.00
456.86GPR85'protein_coding'918AEGain22.695AB E2_Ab0
586.63GRIK2'protein_coding'1334AEGain17.2611EU ES AB CE E2a_E3a42.86
6146.14FAM40A'protein_coding'1042AEGain7.476EU AB E17_Db50.00
7156.11RGS7'protein_coding'1229AEGain5.8210EU ES AB E15_Aa37.50
8176.09PDZRN3'protein_coding'1337AEGain9.005EU AB I7_SR6100.00
9196.03ANKRD13C'protein_coding'519AEGain10.711AB E8_Aa0
10206.00C4orf41'protein_coding'334AEGain10.266EU E25a_E26a0.00
11215.97CHN2'protein_coding'2664AEGain12.8712EU ES AB CE ER13b33.33
12225.95NCKAP1'protein_coding'950AEGain8.352ES AB E25_Da0
13235.94PTPN4'protein_coding'1252AEGain7.725EU AB E17a_E18a33.33
14245.92KIRREL3'protein_coding'217AEGain11.132AB CE E15_Aa0
15285.86POGZ'protein_coding'1848AEGain7.715EU AB E11_Ab100.00
16295.84TTC37'protein_coding'143AEGain10.208EU AB E10a_E11a0.00
17305.80DNAJC16'protein_coding'935AEGain6.315EU AB E14a_E15a50.00
18315.80TMEM63C'protein_coding'124AEGain12.007EU AB CE I1_AR20.00
19325.76CDH9'protein_coding'112AEGain4.565EU E2a_E3a75.00
20355.75ATP8A2'protein_coding'650AEGain6.214EU AB ER19a0.00
21365.73LPHN3'protein_coding'226AEGain8.8110EU CE E11a_E12a71.43
22375.72UBE4A'protein_coding'223AEGain11.082EU AB E8a_E9a0
23405.69SR140'protein_coding'2478AEGain7.219EU AB E20_Da20.00
24415.68DAP3'protein_coding'2454AEGain9.238EU ES AB E4a_E7a50.00
25425.66SYT1'protein_coding'418AEGain5.198EU E1a_E2b28.57
26435.65PPARGC1A'protein_coding'113AEGain7.552EU E8a_E9a0.00
27455.64ING3'protein_coding'722AEGain10.473EU E5a_E6a0.00
28465.63TBC1D23'protein_coding'935AEGain8.985EU E12a_E13a25.00
29485.60MBIP'protein_coding'413AEGain6.244EU AB E3_Da100.00
30495.58SCN2A'protein_coding'736AEGain6.314EU E15a_E16a33.33
31505.58ATG16L1'protein_coding'2060AEGain9.153EU AB E4a_E5a0.00
32525.55PARK2'protein_coding'1023AEGain6.004EU CE I12_AR13100.00
33555.52TRIM14'protein_coding'923AEGain11.113EU E4a_E5a50.00
34565.52HMG20A'protein_coding'315AEGain10.392EU AB E1_Ac0
35575.52CDH13'protein_coding'418AEGain7.452EU E10a_E11a0.00
36605.51ZFP30'protein_coding'413AEGain9.253EU AB ER5a0.00
37615.49LIFR'protein_coding'221AEGain11.657EU E9a_E10a50.00
38625.49UBR2'protein_coding'452AEGain8.313EU AB E32_Aa0
39635.49BDH1'protein_coding'1737AEGain9.477AB E12_Da0
40645.48SLC25A1'protein_coding'518AEGain15.752EU ER7b100.00
41655.48TASP1'protein_coding'822AEGain6.072EU E9a_E10a100.00
42665.47MEF2A'protein_coding'514AEGain7.714EU CE E10a_E11a50.00
43675.46RP5-894A10.2'processed_transcript'12AEGain12.062EU AB E1a_E2a0
44685.45KIAA0528'protein_coding'330AEGain9.447EU AB CE E8_Aa0.00
45715.42CACNA2D3'protein_coding'1363AEGain6.4421EU AB E25_Aa47.06
46725.42HSPA4L'protein_coding'221AEGain6.392EU E1a_E2a0.00
47735.42SCN1A'protein_coding'739AEGain5.161EU E12b_E13a0
48755.41SERHL2'protein_coding'1130AEGain9.473EU AB E9_Ac0
49765.41KIAA1199'protein_coding'536AEGain7.612EU E9a_E10a0.00
50785.40FER'protein_coding'222AEGain8.474EU E5a_E6a33.33
51795.39MAP3K7IP3'protein_coding'827AEGain7.844EU AB E10_Dd0.00
52805.39ADAM9'protein_coding'1038AEGain10.037EU AB ER1b0.00
53825.38PAPLN'protein_coding'534AEGain7.981EU E4a_E5a0
54845.36PCLO'protein_coding'1446AEGain7.5811EU AB ER24a37.50
55855.36OXR1'protein_coding'1131AEGain6.236EU ES AB E8a_E9a0.00
56875.35PRODH'protein_coding'1439AEGain10.685EU AB E2_Aa0
57895.35KCNIP3'protein_coding'720AEGain7.487EU AB E12_Da0.00
58915.34SRGAP3'protein_coding'2065AEGain7.449EU ES AB E15b_E16a0.00
59935.32SLC25A26'protein_coding'824AEGain8.007EU AB E5_Aa33.33
60945.32OPHN1'protein_coding'531AEGain9.0110EU AB CE E2_Da50.00
61955.31INTU'protein_coding'217AEGain7.662EU E2a_E3a0.00
62965.31RALGPS1'protein_coding'1849AEGain9.857EU AB E26a_E27a0.00
63985.30HEPH'protein_coding'1340AEGain9.692EU E8a_E9a0.00
64995.29PNPLA7'protein_coding'1153AEGain6.688EU AB CE E8_Ab100.00
651075.25KIAA0090'protein_coding'1656AEGain7.875EU AB E15_Aa50.00
661085.25CLASP2'protein_coding'2590AEGain7.2915EU AB E11_Da20.00
671095.25LRRN3'protein_coding'511AEGain4.971AB E3_Aa0
681125.23NAA25'protein_coding'225AEGain7.115EU E15a_E16a75.00
691135.23HUS1'protein_coding'1131AEGain7.525EU AB E1_Af100.00
701145.23GPAM'protein_coding'531AEGain8.382EU AB E21a_E21b0
711165.23MINA'protein_coding'514AEGain9.792EU CE E3a_E4a0
721175.23MTMR11'protein_coding'1440AEGain8.636EU AB IR E11a_E12a0.00
731205.21ZNF483'protein_coding'310AEGain9.361EU ER1b0
741235.21FOXN2'protein_coding'414AEGain15.005EU AB ER3c100.00
751245.20SFT2D1'protein_coding'721AEGain10.112ES AB E8_Dc0
761255.20MRPL16'protein_coding'14AEGain7.111AB E2_Aa0
771275.20FAM91A1'protein_coding'228AEGain7.953EU ES E13a_E14a0.00
781285.20MTMR1'protein_coding'1641AEGain6.876EU AB E17_Ab0.00
791295.20RASGRF1'protein_coding'433AEGain4.762EU AB E2_Aa0
801305.19BMS1'protein_coding'123AEGain10.764EU E2a_E3a33.33
811315.19ZNF248'protein_coding'720AEGain5.353EU AB ER3a100.00
821335.16ZNF655'protein_coding'2661AEGain7.617EU AB E4_Da50.00
831365.15STXBP5L'protein_coding'840AEGain6.0011EU AB E26_Da33.33
841375.14FRY'protein_coding'1190AEGain8.9512EU AB E37a_E38a33.33
851385.14CAMTA1'protein_coding'1961AEGain4.733EU AB ER1c0.00
861405.14INPP5F'protein_coding'631AEGain4.793EU AB E12a_E13a0.00
871415.13AGFG1'protein_coding'932AEGain7.604EU AB E15_Aa0.00
881425.13PLRG1'protein_coding'216AEGain5.654EU CE I5_AR2100.00
891465.12EXOC2'protein_coding'434AEGain11.295EU E17a_E18a75.00
901505.11DNM3'protein_coding'833AEGain7.2018EU ES AB E19a_E22a60.00
911515.11RP11-280F2.1'processed_transcript'416AEGain7.342EU AB E6_Da0
921545.10TMOD2'protein_coding'212AEGain6.375EU E2a_E3a75.00
931555.09EPHA4'protein_coding'1548AEGain4.364EU ER9a0.00
941575.09BTRC'protein_coding'729AEGain6.652EU AB E6_Da0
951605.08LUZP1'protein_coding'614AEGain6.131AB E3_Da0
961645.07SORBS1'protein_coding'2460AEGain6.928EU ES AB CE E19_Da0.00
971665.07FAM164A'protein_coding'211AEGain5.071EU ER1a0
981675.07CYFIP1'protein_coding'336AEGain6.766EU AB E18_Da0.00
991685.06VPS16A'protein_coding'938AEGain6.976EU AB E22_Aa0.00
1001715.06ARFGEF2'protein_coding'241AEGain5.086EU AB E27a_E28a25.00
1011735.04FAM104B'protein_coding'717AEGain8.311AB E5_Dc0
1021745.04HP1BP3'protein_coding'1946AEGain8.657EU AB ER1b0.00
1031755.04PET112L'protein_coding'113AEGain6.901AB E8_Da0
1041775.04CTAGE5'protein_coding'736AEGain6.483EU AB E5a_E6a100.00
1051785.03ZDHHC16'protein_coding'2051AEGain7.4710EU AB CE E2_Aa0.00
1061795.02PTPRS'protein_coding'738AEGain7.114EU ES ER6a0.00
1071805.02DYNC2LI1'protein_coding'1132AEGain5.6211EU AB ER2a25.00
1081815.02CACNB2'protein_coding'1333AEGain5.313EU E17a_E18a0.00
1091825.02NRP1'protein_coding'1841AEGain7.153EU AB E14_Da0.00
1101835.02SMG1'protein_coding'264AEGain9.1014EU AB E42a_E43a33.33
1111845.01TOX'protein_coding'211AEGain4.294EU CE I1_SR10.00
1121865.01CPSF2'protein_coding'218AEGain7.194EU ER5b66.67
1131915.00NARG1'protein_coding'733AEGain5.004EU AB E21_Da100.00
1141954.99SYN2'protein_coding'932AEGain5.712EU AB E7_Da0
1151974.99PODXL2'protein_coding'211AEGain6.522EU AB ER8b0
1161984.99DMXL1'protein_coding'143AEGain6.264EU AB ER19a50.00
1171994.98NLGN1'protein_coding'1337AEGain6.695EU AB CE ER14c0.00
1182044.98NCSTN'protein_coding'1848AEGain9.844EU ES AB E5a_E6b0.00
1192064.97AP1GBP1'protein_coding'732AEGain8.548EU ES AB CE ENST0000034561540.00
1202104.96ADRBK1'protein_coding'222AEGain6.634EU E12a_E13a0.00
1212124.96CADM1'protein_coding'314AEGain6.401CE I1_AR470
1222134.95TMUB1'protein_coding'715AEGain9.293EU AB ER5d0
1232144.95GON4L'protein_coding'2477AEGain8.5212EU AB E15a_E15c20.00
1242164.94SEZ6L'protein_coding'1131AEGain7.021AB E2_Aa0
1252204.93CUGBP2'protein_coding'1026AEGain6.314AB CE E10_Aa0
1262214.93USF1'protein_coding'926AEGain7.822AB E10_Dc0
1272234.92ZMAT1'protein_coding'720AEGain8.351AB E7_Da0
1282244.92PTS'protein_coding'16AEGain7.321I2_SR10
1292254.92G2E3'protein_coding'217AEGain6.321EU ER4a0
1302264.92SF4'protein_coding'216AEGain7.893EU AB E7_Aa0.00
1312274.92ANKRD6'protein_coding'932AEGain7.004EU E13a_E14a33.33
1322284.91SLIT2'protein_coding'239AEGain7.561EU E12a_E13a0
1332294.91C18orf8'protein_coding'120AEGain7.668EU AB IR CE E19_Da0
1342304.91SCPEP1'protein_coding'215AEGain6.829EU ES IR E9a_E11a50.00
1352314.91MYOM2'protein_coding'137AEGain6.5911EU ER8a70.00
1362354.90SLC35A5'protein_coding'722AEGain6.112EU AB E1_Da0
1372374.89PDE2A'protein_coding'1156AEGain6.455EU ES AB IR E11a_E15a0.00
1382384.88SBNO1'protein_coding'435AEGain7.7911EU E2b_E3a40.00
1392404.88AKT2'protein_coding'2672AEGain9.0011EU AB IR CE I6_AR10
1402424.87NRIP1'protein_coding'48AEGain4.792EU ES E2a_E5a100.00
1412434.87DDI2'protein_coding'416AEGain7.441ES E4a_E5a0
1422454.87RPRD1B'protein_coding'617AEGain8.343EU AB E6b_E7a0
1432464.86MMP24'protein_coding'19AEGain7.633EU AB E5_Aa0
1442474.85FBXL2'protein_coding'2164AEGain5.907EU AB IR E14_Ac0
1452484.85RP4-788L13.1'protein_coding'412AEGain5.425EU AB E3a_E4b33.33
1462514.85C4orf12'processed_transcript'39AEGain6.401AB E4_Da0
1472534.84BRP44'protein_coding'310AEGain6.372AB E3_Ab0
1482544.84SMARCA1'protein_coding'633AEGain8.0011EU AB ER1e37.50
1492564.84NUPL1'protein_coding'1646AEGain6.826EU AB E7_Ab0.00
1502574.84ANKFY1'protein_coding'226AEGain7.582EU E10a_E11a0.00
1512594.83TNS3'protein_coding'1458AEGain6.4010EU ES AB E21a_E24a33.33
1522604.83C19orf55'protein_coding'419AEGain7.002EU AB ER9b0
1532614.83ANK3'protein_coding'2083AEGain13.1671EU ES AB E29a_E30a77.42
1542634.82PML'protein_coding'1019AEGain7.002EU ER7e0.00
1552644.82STXBP5'protein_coding'736AEGain6.002EU E6a_E7a0.00
1562674.82ARHGEF11'protein_coding'959AEGain5.977EU ES AB E31_Da0.00
1572684.81FAM131A'protein_coding'1025AEGain6.774ES AB E5_Aa0
1582704.81B3GALNT1'protein_coding'1943AEGain5.152EU E5a_E6a0.00
1592714.81PPIA'protein_coding'1023AEGain6.378EU AB E2_Da50.00
1602734.80SPIRE1'protein_coding'1236AEGain6.523EU ES AB E4a_E6a0.00
1612744.80DTNA'protein_coding'1541AEGain7.2713EU ES E1a_E3a16.67
1622764.79DHX57'protein_coding'1553AEGain6.5011EU AB E9_Aa42.86
1632774.79KDM6B'protein_coding'224AEGain8.636EU AB E2_Aa50.00
1642794.79FMR1'protein_coding'1340AEGain5.944EU AB ER1e0.00
1652834.78GLO1'protein_coding'27AEGain7.891EU E1a_E2a0
1662844.78LPHN2'protein_coding'2959AEGain4.726EU ES AB E31a_E37a0.00
1672854.78PREPL'protein_coding'1542AEGain3.143EU AB ER1h0.00
1682874.77SPTLC1'protein_coding'932AEGain6.004EU ES AB ER1b50.00
1692894.76SPAG7'protein_coding'17AEGain7.301EU E1a_E2a0
1702914.76QSOX2'protein_coding'314AEGain5.863EU ER3a0.00
1712924.75SLC37A1'protein_coding'833AEGain4.978EU ES E5a_E7a71.43
1722934.75KPNA3'protein_coding'322AEGain7.983EU AB E17_Db0
1732954.75PQLC3'protein_coding'1129AEGain7.002EU AB ER4c0
1742964.75ISLR2'protein_coding'820AEGain6.692AB E6_Ae0
1752984.74KCNMA1'protein_coding'2769AEGain5.018EU ES IR ER20a20.00
1763004.74TBC1D4'protein_coding'831AEGain8.451ES E10a_E14a0
1773014.74EYA2'protein_coding'1532AEGain6.258EU ER5b57.14
1783034.73PIN1'protein_coding'38AEGain7.632EU E3a_E4b0.00
1793054.72TPD52'protein_coding'415AEGain5.052EU ES E6a_E9a100.00
1803064.72SEC16A'protein_coding'1354AEGain6.5321EU ES AB CE E9_Da35.71
1813084.71SHF'protein_coding'717AEGain5.193EU CE I9_AR3100.00
1823124.71HDHD1A'protein_coding'513AEGain7.241ES E3b_E5a0
1833134.71KIAA1033'protein_coding'234AEGain7.442EU E20a_E21a100.00
1843174.71MLF1'protein_coding'1941AEGain4.766EU ES E11b_E13a60.00
1853184.70FAM102B'protein_coding'518AEGain6.043EU ES ER6a0.00
1863194.70MICALL2'protein_coding'1750AEGain8.393EU AB E8_Aa0
1873204.69SLC1A2'protein_coding'622AEGain2.804EU AB E8_Da0.00
1883214.69LMO3'protein_coding'815AEGain5.261ES E1a_E6a0
1893224.69IQWD1'protein_coding'1546AEGain4.957EU ES AB E16_Da40.00
1903244.69RSPRY1'protein_coding'115AEGain6.472EU AB E9_Aa0
1913254.69SDHALP1'processed_transcript'835AEGain7.652EU AB E11_Db0
1923274.68TP53BP2'protein_coding'1848AEGain5.708EU AB ER13c33.33
1933284.68UBA6'protein_coding'235AEGain5.951EU E1a_E2a0
1943294.68ST3GAL5'protein_coding'1535AEGain6.713AB E11_Aa0
1953344.67FAM172A'protein_coding'516AEGain6.001AB E7_Da0
1963354.67MEGF9'protein_coding'312AEGain6.031EU ER1b0
1973364.66SLC4A10'protein_coding'1251AEGain4.613EU AB E13a_E14b0
1983374.66ZNF720'protein_coding'27AEGain6.892EU AB E2a_E3a0
1993394.66C13orf23'protein_coding'927AEGain7.522EU E12a_E13b0.00
2003414.65TPP1'protein_coding'622AEGain6.452EU AB E3_Da0
2013424.65KIAA0240'protein_coding'319AEGain6.303EU ER8a50.00
2023434.65SLBP'protein_coding'721AEGain5.272EU E1b_E2b0.00
2033444.65CPD'protein_coding'121AEGain6.733EU AB E3a_E4a0.00
2043474.64PILRB'protein_coding'2571AEGain6.909EU ES AB E8_Ag40.00
2053494.64CEP350'protein_coding'1568AEGain17.8117EU ES AB E26a_E27a53.33
2063504.64PSD3'protein_coding'524AEGain4.969EU ES AB E16a_E18a57.14
2073514.64FANCL'protein_coding'1033AEGain6.4210EU AB IR E14_Aa0.00
2083534.63NRF1'protein_coding'823AEGain5.872EU ER1d0.00
2093544.63TMEM49'protein_coding'112AEGain5.772EU E1a_E2a0.00
2103554.63CRBN'protein_coding'1436AEGain6.923EU AB E6_Da0.00
2113564.63USP9X'protein_coding'963AEGain8.2410EU ER13a22.22
2123574.63ADAM22'protein_coding'1461AEGain5.051EU ER29a0
2133584.63FGFR1OP'protein_coding'828AEGain5.173EU ER5b0.00
2143594.63PCGF3'protein_coding'1235AEGain6.455EU AB E6_Aa100.00
2153604.63LBA1'protein_coding'533AEGain4.616EU AB E9_Aa0.00
2163614.63SPRED1'protein_coding'29AEGain5.731EU E4a_E5a0
2173624.62HSPH1'protein_coding'1036AEGain4.527EU AB E4a_E5a20.00
2183644.62ABLIM1'protein_coding'2157AEGain6.872EU AB E17_Da0
2193664.62TOP3A'protein_coding'835AEGain6.634EU AB E1_Ad0.00
2203734.61RUNDC3B'protein_coding'928AEGain5.351AB E6_Aa0
2213764.61RFX4'protein_coding'423AEGain4.427EU E3a_E4a50.00
2223784.61LNPEP'protein_coding'727AEGain4.525EU CE E6a_E7a0.00
2233804.60C6orf192'protein_coding'421AEGain4.666EU AB E6_Db25.00
2243824.60RASGRF2'protein_coding'127AEGain5.794EU AB E19_Da0.00
2253884.59ATG4A'protein_coding'926AEGain6.761EU E5a_E6a0
2263894.59ARHGAP26'protein_coding'2260AEGain5.352ES AB E9a_E11b0
2273904.59C12orf65'protein_coding'38AEGain8.063EU AB E3_Da0
2283914.59ZNF747'protein_coding'24AEGain6.461EU ER2a0
2293924.59AKAP13'protein_coding'845AEGain7.696EU E26a_E27b20.00
2303934.58ZNF135'protein_coding'39AEGain7.551EU E3a_E4a0
2313954.58GOLGA1'protein_coding'637AEGain8.396EU AB E6_Ab100.00
2323984.58C5orf45'protein_coding'413AEGain6.005EU ES AB E6a_E8a50.00
2334004.57ABHD6'protein_coding'722AEGain8.131EU E4a_E5a0
2344034.57OCIAD1'protein_coding'514AEGain5.005EU ES AB E7b_E8a100.00
2354044.57FAM123A'protein_coding'25AEGain15.636EU AB E1a_E2a100.00
2364054.57UTRN'protein_coding'16100AEGain21.8738EU ES AB CE E5a_E6a57.58
2374064.57TOP3B'protein_coding'2266AEGain6.005EU AB ER2c0.00
2384094.57NBEAL2'protein_coding'1685AEGain6.0014EU AB E19_Aa22.22
2394114.57ST3GAL6'protein_coding'2867AEGain7.3120EU ES AB I20_SR233.33
2404124.56AC093838.4'protein_coding'421AEGain6.843EU AB E13_Aa0
2414134.56ATP6AP2'protein_coding'719AEGain2.322EU ER1c100.00
2424154.56SERGEF'protein_coding'111AEGain8.211ES E7a_E10a0
2434164.56ITSN1'protein_coding'37101AEGain5.548EU AB E45a_E46a25.00
2444174.56TXNRD2'protein_coding'2359AEGain6.484EU AB E2_Aa0.00
2454184.56ATP5G3'protein_coding'513AEGain4.972EU AB E1_Ae0
2464194.56KIAA1219'protein_coding'1048AEGain6.474EU AB ER8a0.00
2474204.55CTNND1'protein_coding'1023AEGain7.694EU AB E1_Da0.00
2484214.55HEATR5B'protein_coding'746AEGain6.537EU E18a_E19a16.67
2494224.55CNKSR2'protein_coding'729AEGain3.943EU ES E8a_E10a0.00
2504234.54TNKS2'protein_coding'127AEGain5.503EU E9a_E10a0.00
2514264.54STIM2'protein_coding'1234AEGain5.773ES AB E4a_E7a0


Candidate Differential and Alternative Expression Genes (Loss ONLY)

The following table lists candidate genes ranked according to 'Score'. Only the top 250 genes appear in each list. For a complete list download the results file provided above. To appear in this list, a 'candidate gene' must be differentially expressed at the gene level (DE) or contain at least one alternatively expressed (AE) feature. The 'Score' is based on the fold change as well as other factors for AE events (multiple features supporting the same event, reciprocity, etc.). The 'Event Type' indicates whether the gene was differentially expressed ('DE') or alternatively expressed 'AE'. 'Direction' refers to the direction (+ve/-ve) of the fold change. 'Gain' (+ve) indicates higher expression in library A than library B and vice versa. 'FC' stands for fold change. '# AE Events' is the number of significant alternative expression events observed for each gene. 'AE Codes' refers to various alternative expression subtypes (listed above). The 'Top Feature' is the most significant AE event observed for an AE gene. 'Adjacency' refers to the number of consecutive AE features (potentially supporting the same isoform). 'Adjacency %' refers to the percent of all AE events for a gene that were adjacent to each other.


RankOverall
Rank
ScoreNameGene
Type
Trans.
Count
Exon
Count
Event
Type
DirectionFC# AE
Events
AE CodesTop FeatureAdjacency
%
146.92PDE6B'protein_coding'1245AELoss-18.4717EU AB CE E13_Aa55.56
266.82PK4P'protein_coding'1868AELoss-9.613EU AB E27_Db0
376.69PVALB'protein_coding'715DELoss-40.913EU AB PVALB100.00
496.50WNK1'protein_coding'431AELoss-8.924EU ES E11a_E12a33.33
5106.43THRAP3'protein_coding'522AELoss-10.084EU AB E12_Aa0.00
6116.34ZEB2'protein_coding'2858AELoss-4.025EU AB E11_Aa100.00
7126.29TBP'protein_coding'618AELoss-22.996EU AB E7_Da50.00
8136.17ORAOV1'protein_coding'310AELoss-18.066EU ES E4a_E6a80.00
9166.11HLA-DPB1'protein_coding'1124AELoss-10.064EU AB ER2b100.00
10186.04MCM3AP'protein_coding'1044AELoss-11.327EU AB E26_Aa0.00
11255.91SCARF1'protein_coding'518AELoss-9.293EU E8a_E9a100.00
12265.87VWA5B2'protein_coding'932AELoss-18.5112EU AB E6_Aa25.00
13275.86EIF4ENIF1'protein_coding'1547AELoss-9.965EU ES AB E24_Aa66.67
14335.75TSR1'protein_coding'115AELoss-11.022AB E14_Da0
15345.75GRINL1A'protein_coding'2754AELoss-11.961AB E22_Db0
16385.72DOCK9'protein_coding'2397AELoss-12.2827EU ES AB E63a_E65b31.82
17395.70KTN1'protein_coding'1056AELoss-8.801ES E24a_E26a0
18445.64NKD2'protein_coding'315AELoss-11.131AB E10_Da0
19475.61PGAP3'protein_coding'414AELoss-22.379EU AB E8_Da80.00
20515.56GLTSCR1'protein_coding'115AELoss-8.104EU E2a_E3a66.67
21535.54DLG1'protein_coding'3178AELoss-7.9622EU ES AB E30_Aa28.57
22545.53SGK1'protein_coding'1744AELoss-8.916EU AB E5_Da0.00
23585.52DDIT3'protein_coding'14AELoss-11.913AB E3_Aa0
24595.51COL4A2'protein_coding'1167AELoss-9.948EU E19a_E20a14.29
25695.44POMGNT1'protein_coding'1141AELoss-12.019EU AB E11_Ab25.00
26705.43TPM3'protein_coding'1649AELoss-12.045EU AB E13_Dd0.00
27745.41AC022098.5'lincRNA'13AELoss-10.593EU AB E3_Aa0
28775.41CBY1'protein_coding'1125AELoss-7.503EU AB E2_Da100.00
29815.38ACTA2'protein_coding'717AELoss-9.132AB E5_Aa0
30835.37YTHDF3'protein_coding'27AELoss-7.961AB E6_Aa0
31865.35GNA13'protein_coding'28AELoss-6.264EU AB E4_Da100.00
32885.35NPLOC4'protein_coding'219AELoss-10.843EU AB CE E12_Da0
33905.35RNASET2'protein_coding'1240AELoss-9.717EU ES AB E4a_E6a0.00
34925.32NDST1'protein_coding'216AELoss-10.062EU AB E7_Db0
35975.30SLC43A2'protein_coding'318AELoss-16.677EU ES E10a_E11a83.33
361005.28BRAF'protein_coding'528AELoss-7.375EU E19a_E20a25.00
371015.27HEXB'protein_coding'114AELoss-20.1610EU AB ER5a100.00
381025.26ARFRP1'protein_coding'816AELoss-10.616EU ES AB CE E5_Da0.00
391035.26FLNB'protein_coding'1668AELoss-6.256EU AB E17_Da25.00
401045.25CHUK'protein_coding'428AELoss-7.263EU AB E18_Db100.00
411055.25MED15'protein_coding'3589AELoss-12.856EU AB E17_Aa33.33
421065.25SH3PXD2A'protein_coding'422AELoss-5.714EU AB CE E16_Da0
431105.24NRD1'protein_coding'1455AELoss-20.1511EU AB E33_Aa57.14
441115.24TSNARE1'protein_coding'317AELoss-8.341EU E1a_E2a0
451155.23ENSA'protein_coding'1022AELoss-8.818EU AB IR E6_Aa0.00
461185.22ACSS2'protein_coding'2770AELoss-6.194EU AB E23_Ab0.00
471195.22PHF10'protein_coding'721AELoss-7.634EU AB E10_Aa0
481215.21ABCD4'protein_coding'1956AELoss-10.8911EU ES AB E8a_E8b0.00
491225.21ITGA3'protein_coding'226AELoss-18.2111EU E20a_E21a50.00
501265.20DCTN1'protein_coding'3092AELoss-7.5015EU ES AB E30e_E31b30.77
511325.17LRCH4'protein_coding'1348AELoss-10.2712EU AB E6_Ag40.00
521345.16PHF20'protein_coding'1853AELoss-10.819EU ES ER8b37.50
531355.15MICALL1'protein_coding'731AELoss-5.793EU AB E11_Aa100.00
541395.14CNTN1'protein_coding'324AELoss-14.3610EU CE E7a_E8a33.33
551435.12TRMU'protein_coding'1939AELoss-9.663EU AB E12_Ad0.00
561445.12EIF2C1'protein_coding'221AELoss-7.3210EU AB E3_Aa57.14
571455.12AC018737.4'processed_transcript'513AELoss-4.382AB E5_Aa0
581475.12C17orf62'protein_coding'413AELoss-8.523EU AB E6_Aa0
591485.12NT5DC2'protein_coding'1743AELoss-6.823EU AB E6_Aa100.00
601495.11LZTS1'protein_coding'49AELoss-10.233EU AB E2_Ab0.00
611525.11FAM71F2'protein_coding'717AELoss-10.115EU AB E4_Da0.00
621535.10ITPR3'protein_coding'158AELoss-7.7510EU AB E54_Da40.00
631565.09KIAA0652'protein_coding'623AELoss-8.985EU E12a_E13a50.00
641585.09SETD3'protein_coding'827AELoss-8.312EU AB E14_Aa0
651595.08XRCC1'protein_coding'220AELoss-10.032AB E13_Aa0
661615.08CWF19L2'protein_coding'526AELoss-8.173EU E7a_E8a0.00
671625.08PPP2R3A'protein_coding'625AELoss-7.741EU E5a_E6a0
681635.07CSNK1D'protein_coding'411AELoss-9.941AB E9_Aa0
691655.07CDK10'protein_coding'624AELoss-13.0110EU AB E2a_E3a66.67
701695.06GNL1'protein_coding'1027AELoss-7.732AB E8_Db0
711705.06NUP93'protein_coding'122AELoss-10.007EU AB E10a_E11a40.00
721725.05MDM4'protein_coding'1358AELoss-8.5710EU AB E35_Aa50.00
731765.04PSMB10'protein_coding'211AELoss-8.753EU AB E6_Aa0
741855.01TTC28'protein_coding'938AELoss-9.604EU AB E23a_E24a0.00
751875.01MATN2'protein_coding'322AELoss-5.737EU AB CE E2a_E3a33.33
761885.01FRMD8'protein_coding'311AELoss-6.461AB E10_Da0
771895.01BRD8'protein_coding'2367AELoss-16.947EU AB E13_Ab0.00
781905.00ARAF'protein_coding'628AELoss-6.572AB E2_Aa0
791925.00CLTA'protein_coding'926AELoss-6.897EU ES E5a_E7a100.00
801934.99TRAPPC9'protein_coding'427AELoss-9.143EU CE E3a_E4a0.00
811944.99WDR60'protein_coding'635AELoss-9.305EU ES AB E13_Da0.00
821964.99KANK3'protein_coding'316AELoss-6.901AB E12_Aa0
832004.98AGTPBP1'protein_coding'1141AELoss-8.6011EU AB E27_Aa16.67
842014.98SFRS2IP'protein_coding'929AELoss-8.694EU ES E9a_E11a33.33
852024.98VEGFB'protein_coding'28AELoss-7.361ES E5a_E7a0
862034.98TMBIM1'protein_coding'2253AELoss-8.639EU AB E11_Dd50.00
872054.97FMNL2'protein_coding'743AELoss-7.734EU AB E26a_E27a0.00
882074.97C17orf85'protein_coding'315AELoss-6.452EU ES E7a_E9b0.00
892084.97DDR1'protein_coding'2556AELoss-6.833EU ES AB E9a_E11b0.00
902094.97RBMX'protein_coding'618AELoss-6.851AB E11_Aa0
912114.96RASAL1'protein_coding'325AELoss-6.584EU AB E14_Aa0
922154.94MBD4'protein_coding'310AELoss-6.993EU AB E7_Da0
932174.94JHDM1D'protein_coding'427AELoss-6.762EU E13a_E14a100.00
942184.93GOLGA2'protein_coding'1248AELoss-5.754EU AB E9_Da100.00
952194.93PDCD10'protein_coding'2156AELoss-16.9513EU ES AB ER2g80.00
962224.93CCDC97'protein_coding'15AELoss-6.621AB E4_Da0
972324.91MAFK'protein_coding'38AELoss-2.991ES E2a_E4a0
982334.91PES1'protein_coding'1344AELoss-7.171EU ER17c0
992344.90MAML3'protein_coding'411AELoss-8.341EU E6a_E7a0
1002364.90CENPT'protein_coding'418AELoss-16.723EU AB E9_Aa0
1012394.88CNTNAP4'protein_coding'1039AELoss-6.254EU ES AB E19_Da50.00
1022414.88LDLR'protein_coding'218AELoss-7.501AB E14_Da0
1032444.87C6orf130'protein_coding'1640AELoss-6.853EU ES AB E9_Di0.00
1042494.85CAMSAP1'protein_coding'1342AELoss-6.1410EU ES AB E6_Da33.33
1052504.85AP002478.3'protein_coding'13AELoss-8.751AB E2_Aa0
1062524.85CPT1A'protein_coding'220AELoss-9.224EU E4a_E5a33.33
1072554.84TTC38'protein_coding'726AELoss-6.022EU ES E14a_E15a0.00
1082584.84NFX1'protein_coding'737AELoss-8.115EU AB E9_Da50.00
1092624.83ZNF577'protein_coding'1331AELoss-6.093ES AB E6_Ac0.00
1102654.82ZNF419'protein_coding'920AELoss-11.435EU AB E9_Db33.33
1112664.82CASKIN2'protein_coding'221AELoss-6.652EU AB E8_Aa0
1122694.81GDPD5'protein_coding'523AELoss-7.553EU ES E12a_E13a0.00
1132724.81PPFIBP1'protein_coding'232AELoss-7.2811EU CE I7_AR528.57
1142754.80C4orf14'protein_coding'17AELoss-14.843EU E2a_E3a100.00
1152784.79BX276089.2'protein_coding'211AELoss-6.752AB E9_Da0
1162804.79AKAP10'protein_coding'421AELoss-14.465EU AB ER8a100.00
1172814.78TWSG1'protein_coding'15AELoss-9.051AB E4_Da0
1182824.78RNF145'protein_coding'213AELoss-8.484ES AB CE E3_Da0
1192864.77SOX7'protein_coding'310AELoss-7.864EU ES E5a_E7a66.67
1202884.77AC007566.2'processed_transcript'27AELoss-7.012AB E3_Da0
1212904.76LBR'protein_coding'929AELoss-7.312EU E14a_E15b0.00
1222944.75BUD13'protein_coding'314AELoss-7.041AB E7_Aa0
1232974.74ABTB2'protein_coding'218AELoss-6.962AB E16_Da0
1242994.74SAPS2'protein_coding'942AELoss-14.714EU AB E5_Aa0.00
1253024.73RYR2'protein_coding'5116AELoss-27.6434EU ES AB CE E103a_E104a57.14
1263044.72GABRA2'protein_coding'212AELoss-24.545EU AB CE E10_Da50.00
1273074.71TLN1'protein_coding'973AELoss-6.872EU CE I49_AR10
1283094.71YIF1B'protein_coding'513AELoss-8.361AB E2_Da0
1293104.71SETD5'protein_coding'3186AELoss-8.7514EU AB E32_Dc12.50
1303114.71SCAMP4'protein_coding'1023AELoss-7.611AB E10_Ab0
1313144.71KIAA0146'protein_coding'120AELoss-6.395EU CE I11_AR7100.00
1323154.71MYO6'protein_coding'846AELoss-6.682EU E19a_E20a0.00
1333164.71DNASE1L1'protein_coding'1331AELoss-18.586EU AB ER5b33.33
1343234.69RP11-534G20.1'processed_transcript'1023AELoss-7.132AB E9_Aa0
1353264.68NT5C'protein_coding'15AELoss-6.711AB E4_Da0
1363304.68ZNF146'protein_coding'46AELoss-7.772EU AB E1_Db0
1373314.68ANKS6'protein_coding'932AELoss-7.845EU E5a_E6a0.00
1383324.68SRRT'protein_coding'2059AELoss-6.614EU AB E21_Ae0.00
1393334.67SPOPL'protein_coding'418AELoss-6.073EU AB E4_Ab0.00
1403384.66THOC6'protein_coding'213AELoss-6.272EU CE E5a_E6a0
1413404.65WWP1'protein_coding'425AELoss-7.335EU E2a_E3a25.00
1423454.65AKAP1'protein_coding'419AELoss-7.961AB E7_Aa0
1433464.65RPL23A'protein_coding'718AELoss-6.141AB E5_Ab0
1443484.64EIF3B'protein_coding'1451AELoss-7.381AB E12_Ac0
1453524.63GCA'protein_coding'1231AELoss-5.554EU CE I11_SR2100.00
1463634.62TMEM8A'protein_coding'930AELoss-8.465EU AB E15_Db0.00
1473654.62RBPMS'protein_coding'614AELoss-5.981AB E9_Da0
1483674.62SLC6A13'protein_coding'422AELoss-6.394EU AB E9_Aa0
1493684.62RHBDL2'protein_coding'413AELoss-5.767EU AB E2_Ab50.00
1503694.62BNIP2'protein_coding'929AELoss-7.455EU ES AB E5_Db50.00
1513704.62CEP110'protein_coding'1771AELoss-7.634EU AB E45a_E46a0.00
1523714.61KCNN3'protein_coding'312AELoss-6.844EU ES E6a_E7a33.33
1533724.61ASCC2'protein_coding'2362AELoss-6.742AB E4_Aa0
1543744.61SCAPER'protein_coding'235AELoss-7.532EU AB E25_Da0
1553754.61C1orf159'protein_coding'2760AELoss-7.7810EU ES AB E4_Ab42.86
1563774.61TFRC'protein_coding'1546AELoss-6.943EU AB E14_Ad0
1573794.60C10orf118'protein_coding'726AELoss-11.192EU E9a_E10a100.00
1583814.60BAZ2A'protein_coding'231AELoss-6.789EU AB E21_Aa0.00
1593834.60TULP3'protein_coding'317AELoss-5.751AB E10_Aa0
1603844.60HPS4'protein_coding'2051AELoss-7.866EU ES AB E15_Ab0.00
1613854.60MAP4'protein_coding'2365AELoss-4.773EU ENST000004342670.00
1623864.59SRCAP'protein_coding'1052AELoss-6.926EU AB E23a_E24a25.00
1633874.59USP18'protein_coding'213AELoss-6.021EU E4a_E5a0
1643944.58NEK6'protein_coding'1228AELoss-15.197EU AB E15_Da25.00
1653964.58CPSF3'protein_coding'629AELoss-7.533EU AB E19_Aa100.00
1663974.58FXR1'protein_coding'2664AELoss-6.657EU AB E24_Aa0.00
1673994.58PSKH1'protein_coding'13AELoss-6.281AB E3_Aa0
1684014.57RNF168'protein_coding'28AELoss-7.552EU E4a_E5a0.00
1694024.57LMNA'protein_coding'2162AELoss-6.655EU AB E6_Da0
1704074.57ZNF846'protein_coding'16AELoss-5.983EU AB E3_Da0.00
1714084.57CDC26'protein_coding'27AELoss-5.811EU E5a_E6a0
1724104.57SRCIN1'protein_coding'220AELoss-6.064EU E2a_E3a0.00
1734144.56PNPT1'protein_coding'952AELoss-13.866EU E12a_E13a60.00
1744244.54RBCK1'protein_coding'1738AELoss-5.723EU AB CE I11_AR20
1754254.54AC013272.2'pseudogene'211AELoss-5.981AB E6_Db0
1764274.54FGD1'protein_coding'118AELoss-14.2812EU AB CE E5a_E6a55.56
1774284.54TMEM38B'protein_coding'614AELoss-6.821AB E5_Ab0
1784304.53CDC42EP1'protein_coding'410AELoss-2.722EU AB E4_Aa0
1794314.53NFYB'protein_coding'18AELoss-6.221EU E1a_E2a0
1804344.53CHD2'protein_coding'342AELoss-5.6714EU AB CE E33_Da63.64
1814354.52AC008746.4'processed_transcript'36AELoss-7.212AB E1_Ac0
1824364.52FLII'protein_coding'1762AELoss-7.246EU AB E7_Ae25.00
1834374.52SDK2'protein_coding'1060AELoss-6.367EU AB E31a_E32a40.00
1844404.52SUMF2'protein_coding'2241AELoss-7.844EU AB E2_Da0.00
1854414.52TMC4'protein_coding'1235AELoss-6.072AB E12_Da0
1864434.51RPS6KB2'protein_coding'217AELoss-7.144EU AB E7_Aa0.00
1874474.51ZIM2'protein_coding'623AELoss-7.385EU AB CE ER11c0.00
1884484.51SYNPR'protein_coding'1537AELoss-12.736EU AB E17_Dc50.00
1894494.51RPL21'protein_coding'1020AELoss-6.094EU AB E4_Aa0
1904514.50XPA'protein_coding'412AELoss-6.713EU ES AB E7_Da0.00
1914544.49OPLAH'protein_coding'231AELoss-7.704EU E10a_E11a33.33
1924554.49C6orf142'protein_coding'823AELoss-35.287EU AB ER16a100.00
1934584.48SENP1'protein_coding'324AELoss-7.241EU E18a_E19a0
1944624.48SMC5'protein_coding'329AELoss-7.851EU E21a_E22a0
1954634.48SSRP1'protein_coding'222AELoss-7.261AB E7_Ab0
1964664.47POLD2'protein_coding'1847AELoss-6.193EU ES E9a_E11a0.00
1974684.47RRM1'protein_coding'223AELoss-6.331EU E6a_E7a0
1984734.46DIS3L2'protein_coding'1761AELoss-6.573EU AB E27_Aa0
1994744.45DGCR5'processed_transcript'619AELoss-20.786EU AB CE E10_Da0
2004754.45AC010332.1'lincRNA'29AELoss-6.471AB E4_Aa0
2014784.45A1BG'protein_coding'29AELoss-6.151AB E3_Da0
2024794.45TFDP2'protein_coding'3069AELoss-15.3510EU AB ER21g16.67
2034814.45MSH6'protein_coding'822AELoss-6.112AB E12_Da0
2044824.44ZNF276'protein_coding'314AELoss-7.183EU AB E11_Aa0
2054834.44STAMBP'protein_coding'1338AELoss-5.724EU AB E13a_E14a50.00
2064844.44DOC2A'protein_coding'111AELoss-32.046EU E5a_E6a80.00
2074854.44FARP2'protein_coding'2272AELoss-7.032AB E31_Da0
2084864.44PARP4'protein_coding'338AELoss-5.526EU AB E2_Da33.33
2094874.44WASH3P'protein_coding'533AELoss-6.111AB E13_Da0
2104904.44NUP85'protein_coding'322AELoss-12.505EU ES AB E9a_E10a66.67
2114924.43RBM16'protein_coding'733AELoss-6.905EU AB E8_Aa0.00
2124954.43IDH3A'protein_coding'316AELoss-6.302ES AB E12_Aa0
2134964.43TBL1X'protein_coding'933AELoss-7.402AB E9_Da0
2144974.43WIPI1'protein_coding'113AELoss-12.368EU AB CE E10_Da0.00
2154984.43FASTKD3'protein_coding'29AELoss-13.542EU E5a_E6a100.00
2165024.43PSMD9'protein_coding'27AELoss-7.421AB E6_Aa0
2175044.43KIAA1274'protein_coding'323AELoss-6.262AB E5_Aa0
2185054.42RASIP1'protein_coding'112AELoss-6.362EU AB E1_Da0
2195064.42MED13'protein_coding'234AELoss-6.557EU ER2b16.67
2205074.42HVCN1'protein_coding'413AELoss-5.942EU AB E6_Aa0
2215084.42MAGED1'protein_coding'1242AELoss-23.011EU ER10e0
2225094.42RTEL1'protein_coding'1867AELoss-22.1922EU AB CE E1_Ad21.43
2235114.42CNTROB'protein_coding'523AELoss-5.913AB E4_Da0
2245134.42ITFG3'protein_coding'1953AELoss-7.618EU AB E3_Da0.00
2255174.42KIAA1731'protein_coding'331AELoss-14.9011EU AB ER22a88.89
2265244.41SEC14L1'protein_coding'724AELoss-14.203EU E18a_E18b0.00
2275264.40CLK1'protein_coding'1748AELoss-15.444EU AB E9_Aa0
2285274.40RPL22'protein_coding'820AELoss-6.372EU ES E4a_E5e0.00
2295304.40AMDHD2'protein_coding'417AELoss-12.141AB E9_Aa0
2305314.40FNBP1'protein_coding'1643AELoss-4.103EU ES AB E13_Da0.00
2315334.40TMEM53'protein_coding'917AELoss-6.112EU AB E3_Db0
2325354.40AC136007.1'processed_transcript'4085AELoss-5.993EU ES E13e_E19a0.00
2335364.40NCOR1'protein_coding'2079AELoss-12.135EU ES E12a_E13a25.00
2345374.39CTB-161A2.2'protein_coding'616AELoss-5.903EU AB IR Ix0
2355414.39AC006276.1'protein_coding'15AELoss-6.261AB E5_Aa0
2365444.39CNPY3'protein_coding'416AELoss-7.002ES AB E3_Db0
2375454.39AC011427.1'protein_coding'720AELoss-6.152EU AB E1_Ac0
2385464.39SGCE'protein_coding'1235AELoss-13.507EU AB E13a_E14a20.00
2395494.38MMRN2'protein_coding'415AELoss-6.381EU ER8d0
2405504.38UNK'protein_coding'117AELoss-6.002AB E4_Da0
2415514.38MRPL43'protein_coding'1528AELoss-7.402AB E3_Aa0
2425524.38SDAD1'protein_coding'326AELoss-16.943EU E5a_E6a0.00
2435544.38RUFY1'protein_coding'627AELoss-6.831AB E19_Aa0
2445614.37JAK1'protein_coding'635AELoss-14.004EU E24a_E25a33.33
2455634.36MAN2C1'protein_coding'328AELoss-14.507EU AB E22_Da0.00
2465664.36KCTD20'protein_coding'927AELoss-6.641AB E10_Da0
2475674.36HS3ST4'protein_coding'24AELoss-21.421AB E3_Da0
2485684.36C2orf30'protein_coding'624AELoss-12.436EU AB E8a_E9a0.00
2495714.35PRKRIP1'protein_coding'1024AELoss-6.942AB E6_Aa0
2505724.35CGRRF1'protein_coding'16AELoss-10.243EU E2a_E3a0.00
2515734.35GSR'protein_coding'214AELoss-19.133EU E9a_E10a0.00