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SUMMARY
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- Mon May 29 00:31:50 2017
- [A67711]- commit hash = b2fcf38
- assembly checksum = 1,312,056,501,871,170,731
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INPUT
-  503.80 M   = READS          = number of reads; ideal 800-1200 for human
-  139.00 b   = MEAN READ LEN  = mean read length after trimming; ideal 140
-   62.79 x   = EFFECTIVE COV  = effective read coverage; ideal ~42 for nominal 56x cov
-   61.49 %   = READ TWO Q30   = fraction of Q30 bases in read 2; ideal 75-85
-    0.41 kb  = MEDIAN INSERT  = median insert size; ideal 0.35-0.40
-   80.39 %   = PROPER PAIRS   = fraction of proper read pairs; ideal >=75
-   30.19 kb  = MOLECULE LEN   = weighted mean molecule size; ideal 50-100
-    0.87 kb  = HETDIST        = mean distance between heterozygous SNPs
-    8.11 %   = UNBAR          = fraction of reads that are not barcoded
-  426.00     = BARCODE N50    = N50 reads per barcode
-   35.54 %   = DUPS           = fraction of reads that are duplicates
-   21.90 %   = PHASED         = nonduplicate and phased reads; ideal 45-50
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OUTPUT
-    1.38 K   = LONG SCAFFOLDS = number of scaffolds >= 10 kb
-    2.04 kb  = EDGE N50       = N50 edge size
-   36.12 kb  = CONTIG N50     = N50 contig size
-    0.10 Mb  = PHASEBLOCK N50 = N50 phase block size
-    0.94 Mb  = SCAFFOLD N50   = N50 scaffold size
-    0.69 Mb  = SCAFFOLD N60   = N60 scaffold size
-    0.38 Gb  = ASSEMBLY SIZE  = assembly size (only scaffolds >= 10 kb)
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