||n     ||n:500 ||n:N50 ||min   ||N80   ||N50   ||N20   ||E-size        ||max   ||sum   ||name  ||
|4755   |1318   |215    |500    |2671   |6305   |12254  |7794   |31812  |4499895        |myco-8.fa      |
|4178   |741    |63     |500    |7593   |21452  |42688  |26498  |92731  |4553101        |ntm-miseq_MINIONall-LINKS.scaffolds.fa |
|4178   |741    |63     |500    |7619   |21578  |43000  |26682  |94180  |4573594        |./sealer/ntm-miseq_MINIONall-LINKSsealed-2.scaffolds.fa        |

Process: 
1. ABySS on PE250 MiSeq, chose k72
2. LINKS on (1), using SJ_15 all 2D reads
/projects/rwarren_prj2/LINKS/paper/links_v1.8.2hpce/LINKS -f myco-8.fa -s minionALL.fof -d 500,1000,2000,3000,4000,5000,6000,7000,8000,9000,10000,12000,14000,16000,18000,20000 -b ntm-miseq_MINIONall-LINKS -t 1
3. Sealer on (2)
build_k128/Sealer/abyss-sealer -o miseq_SJ15_all2D-LINKSsealed.scaffolds
--print-flanks -S
/genesis/extscratch/btl/rwarren/sealer_manuscript/human/sealer/ntm/ntm-miseq_MINIONall-LINKS.scaffolds.fa
-v -j 12 -B 1000 -F 700 -P 10 -k100 -k95 -k90 -k85 -k80 -k75 -k70 -k65 -k60
-k55 -k50 -k45 -k40 -k35 -k30 \
/genesis/extscratch/btl/rwarren/sealer_manuscript/human/sealer/ntm/Undetermined_S0_L001_R1_001.fastq
/genesis/extscratch/btl/rwarren/sealer_manuscript/human/sealer/ntm/Undetermined_S0_L001_R2_001.fastq

*Running Sealer after LINKS scaffolding closed 477/749 gaps (63.7% of gaps)