ELF><@@Lt$L|$IH\$Hl$ILd$Ll$HHHɉt$HL$tEnEf IE9|`ANE9|JAVI~I6AF=AAF EEnffffD$E9DHIWID)FH)HH9IGIcI6D)H<HcA+FEf HIEA9AFA?H|$tIHcHT$IIWAH\$Hl$ Ld$(Ll$0Lt$8L|$@HHfffE9DLIcI;D$9HA9IWID)FH)HH9/HcIHHHH HHH HHH HHH HHH HIwEnIIGfIHIcHHDA HA9AFPffATIUSHDW`HohEtKffM;M }HUHcAEӉT$ >1@DMEuM;M |H}HuE=E EtM끃>ƒ@ ШtAt$`IT$@ID$0|$ +AT$0H[]A\A\$`HL$ L1ID$HID$0HID$x|$ tIT$1ɾ HnDEEM;M }HUHc4AEt$ 0>'+@HHcfHI|$@HH HHH HHH HHH HHH HIt$8\$ IL$0ID$@JIt$8I9t$Ps5M;M }HUHcAET$ ; tK}uɋM;M |H}HuE=E EtMfffutTM;M }HUHc4AEt$ IT$HI;T$0s~F߃^wID$X@4uID$HuM;M |H}HuE=E EtMvI|$XIt$PID$XIT$HID$XID$0I;D$HAD$`DH[]A\úffffffffAWIAVAAUIATE1USH8Ht$0AD$,IUIcDH@ ELH,ºEHuDE$HË9C}DEC S KHuDL$,LD$0D$CD׉D$CD$CDǿE1$1{@t/HCHIcԿAċ4H1D9c@uHK(HS8Hs01HAE9eH8[]A\A]A^A_ÐAVAUIATUSffLx.Twff$L߃ yҋ EЅɸD‹B9HHHHHHHHHc¿ItpI HHLpHH]hI@ID$QIT$HcH}0H[A$Hډ;HcHcHu@HHCHcHCH}HCHA$A;D$u4I|$At$HcH4vHHID$A$k H=1ɺ 1HHHHHHHSH >H=1H 6H 'H 'H %H QH SH []A\A]A^HtEH}H}(H}@H}XH]hHtH;HHLA$H=1HcItpI HHLhH]hHffHxtAH}@E1AA2IcD)AHcE9HD:H9D:@49tIcH88HM@HuA-LHfHtEH}H}(H}@H}XH]hHtH;HHL[]A\A]A^1HM@HuA+L_NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTVGHNNCDNNMNKNNNNYSANBWXRNNNNNNNtvghNNcdNNmNkNNNNysaNbwxrNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN% : ; I$ > $ >  I  : ;  : ;I8 &I : ; : ; I8 I !I/ : ;I : ;  : ; I8 .: ; ' I@: ; I: ; I U4: ; I1UX Y 11UX Y .: ; ' I : ; I.: ; ' @.? : ; ' I@4: ; I141 41!1X Y "1X Y#1X Y $ U%4I4 & '4: ; I(.? : ;' I ): ;I*.: ; ' +4: ; I? < ,4: ; I?  -4: ; I } 8int F Fv . ?# # # # #  #( #0 #8 #@ #H #P #X #` #h "?#p &?#t (p#x ,T# -b# .# 2# ;{# D# E# F# G# H-# J?# L#M  # # ?#    1M4[ _ X?# Y?# Z?# \#row]?# ^?#?_% eic?#jc?# dM#ePt i# j?# k?# k?# l?# l?# m?# m?# o#( o#0 p#8 r?#@ s#HtJlK-#mK-#sL#M0  buf #  ?#end ?#  ?#f # p  #  #seq #0  #H  ?#`f #h0 ;l?#sv#n# ?# ?# # ?ks  ?str  i ?; ?seq ;c ?ks A RA R)A RA R] ?ks YssXX|lX?sX|XiZ?aa\p]  ?? c?ss        % B6  @ J  [  d !> o  "    ! R #      $  " -  % u6  @  J  [  d !R V yc n $B y  # } #    : fn9|s; p<fp=l>?seq?;% &'P-'P   J  ;fd s ;o  f ks ( ?)|( LF)J|)J )J?*  ks ;*  ks *A ossnfnn|fppseqq;lr?%Q  Q   A * /len.?seq. i0?&tmp2+ + + + ;+ I?++  M ,  -+? -+? -+? -+? -,  /usr/include/usr/lib/gcc/x86_64-redhat-linux/3.4.6/include/usr/include/bitssimple_dp.cstdlib.hzlib.hzconf.hkseq.hstddef.hstdaln.hstdint.hstdio.hlibio.htypes.hgetopt.h  (7e)WsoIIT:F@4d:esq99qU' &>rdbbd @@yU\UJU6J98(H8qWS:r[:F,prVw:TVq~u6y\~JcvZU92G7I,88:8:D0c*J$~,U#>%s %d %d %s %c %d %d %d %d %d%cMDI %s %s %s gT:frpr sequence. load_seqsaln_seqs Usage: bwa stdsw [options] Options: -T INT minimum score [%d] -p protein alignment (suppressing -r) -f forward strand only -r reverse strand only -g global alignment Note: This program is specifically designed for alignment between multiple short sequences and ONE long sequence. It outputs the suboptimal score on the long [load_seqs] %d sequences are loaded. x $MJ^P,BDA D0<OBEE E(D0A8Dp4\BBE A(A0x $MJ^P,DBDA D0<tOBEE E(D0A8Dp4\BBE A(A0(w(Mw6U6b^blUlM^6T6MD6Q6g_glQlM_+R46R6<<TRTMa0V04P;SVlV]1V13]3MVPRwRVwVWwW[w [Ew0P}U}\U;\;<U<A\A`U`8\;E\<\|\Q#n\E\c9V<6V;EVPRwRWwW\w\aw aew(efw0fjw8jwPU]UPyTy@PyQy^QPyRy_RPX.YXd\P$;\;CQC\SVwwww w( w0US ST ] ]PPuT \ \ \S S : SW S ^ ^ ^O Y P  PW _ PH M U U T QR W U: Se j U U T ] ] Um r U S S S e U X  R C XC j P Z T U S. bwa_stdsw aln_rev_table, a;pMpnPPu~hz v  kp v  uzv } R    9   band_widthatoi_shortbuf__pad3_IO_lock_t__pad5kseq_tstderr_IO_buf_endqualend2_IO_write_endunsigned intend1uint32_taln_param_blastaln_seqs_old_offset_markersg_aa__endptrbegin__kstring_tseqs_tcomment_flagsseq1_t_posstdoutdretaln_1seqis_eofgap_endaln_rev_tableks_getclong long unsigned intkstring_tgzFile_IO_backup_basedelimiter_offsetn_seqs_filenokseq_initsize_tAlnParamscore_IO_read_base_IO_save_endname_nextargvuint8_tkseq_readseqsg_threskstream_tcharlast_char_mode_IO_marker_IO_read_ptrgap_extm_seqsout1out2_IO_write_baselong long int_IO_save_baseks_destroystart1__baseAlnAlng_strandoptindpathshort int__pad1__pad2__pad4_vtable_offsetvoidpbwa_stdswstart2strandstrtol_IO_read_end__func__stdinlong int__nptrn_cigarks_initrevseqoutmsubo_locklong unsigned intg_aln_paramload_seqs_IO_FILEargcmatrixctypeunsigned charaln_param_aa2aagap_open_sbufcigar32_IO_write_ptrg_is_globaloptarg__retvalpath_t__off_tsigned charshort unsigned intks_getuntil__kstream_tsimple_dp.cpath_len_chain_flags2_cur_column/home/pubseq/BioSw/bwa/bwa-0.5.9GNU C 3.4.6 20060404 (Red Hat 3.4.6-8)__off64_t_unused2_IO_buf_base__lenkseq_destroyGCC: (GNU) 3.4.6 20060404 (Red Hat 3.4.6-8).symtab.strtab.shstrtab.rela.text.data.bss.debug_abbrev.rela.debug_info.rela.debug_line.rodata.str1.1.rela.rodata.rodata.str1.8.rela.debug_frame.rela.eh_frame.debug_loc.rela.debug_pubnames.rela.debug_aranges.debug_ranges.debug_str.note.GNU-stack.comment @ J &@  ,`@ 1`\D ?VU=Pla2V Lu pl }2!#o$`p`x%a 12p 20p0;206; ;-;hD xIc #/M;P EPON  Z e  p~\0@GNV[simple_dp.cg_aag_strandg_thresg_is_globalks_getuntilkseq_readaln_1seqg_aln_param__func__.0__func__.1aln_rev_tablegzreadmemcpyrealloc__ctype_b_localn_stdaln_auxprintfaln_free_AlnAlnbwa_stdswgetoptoptindaln_param_aa2aaerr_xzopen_corecallocmalloc__strdupoptarg__strtol_internalaln_param_blaststderrfwritefprintffreegzclose !""D!)!  8# *$< R "Y$l &w$% 1'  1'(3):A)H$O) V,])d4l v 8| *++,++ ,)  = -y !    . /  0  0 $ 0 , 0 1 % 2+ 2 17 @> 3E 1T hY 2` 1o t 2{ 1  2 1  2 1  2 1 p 2 1 : 2 4 4) 42 4C 4K 4S 4[ 5f 1k r 3y (~ 8  * + + , ! - K  4 4 4 4 4 4 4 5     |% +) [. 9 CG  N U \ ec j q |  C  L * k     =  W  / A> ZM R\ k z @ { G  O   = l  & 6 F ,V f  !       K  w. < $J  X yt      7 s r  R* 8 8F 3T 8b 3p ~    A   1 D R n M|  3  t ,  ( 3;MC Q 9V b` o t ~ (   PE C  r  0 ` . F "b iPqy .   ( _    :      $ ) t3 w8 B O  f @q ?v  b    P      P        /  8  G  O W ^ % g 6 o O ~ H  k     0 @ p     R + y 4  =  C PL  W | _  n  w    > a   * O $u      z  h 7 [ ,   :       $ - 9 B N W c l Ux   (08@HPX`hpx     D HPt xP  HPxP