ELF>$@@AWAVAUATE1UHSHHHD$D$ Hxic=afffLAduA@iuA@vuA@HD$ yB9H|$9 H|$Hx H|$IHx H|$IHx EHD$QHcHtHH IHt$HWL)H=H*^ZHHt$LLAD.pacADLHt$LA.rpafADcH +ILLWL)H=H*^ZHt$LLAD.pacADLHt$LA.bwtADH 5I|$ '1҃|$ 1|$ @ WL)H=H*^ZHt$LLAD.rpafADcLHt$LA.rbwfADtH =I|$ O1҃|$ 1|$ @ WL)H=H*^ZHt$LLAD.bwtADH ILHHHLHWL)H=H*^ZHt$LLAD.rbwfADtH "ILHHHLHWL)H=H*^ZHt$LLAD.bwtADHt$H|$H|$HT$.saH -IL HHH|$HHWL)H=H*^ZHt$LLAD.rbwfADtHt$H|$H|$HL$.rsaDH 5IL HHH|$HHWL)H=H*^ZH|$LLH|$HH1[]A\A]A^A_fffp`H=HD$LHu D$ Aiu A@stuD$ A@tH1fffAH5 H 6H @H <H ,H GH GH 1HH[]A\A]A^A_HcHtHt$LIHH.ntH %ILLWL)H=H*^ZLHELl$(HD$ HD$HD$0H 3IHt$ WL)H=H*^ZLLHHHLLHHHLLLLHcH|HD$% : ; I$ > $ >  I : ;  : ;I8 &I  : ; : ; I8 I !I/ : ;I : ;  : ; I8 .? : ; ' I@: ; I4: ; I 4: ; I4: ; I4I4   4: ; I  U U4: ; I? < :8intiiiq . b# # # # #  #( #0 #8 #@ #H #P #X #` #h "b#p &b#t (p#x ,F# -T# .# 2# ;{# D|# E|# F|# G|# H-# Jb# L#w?   # # b#    <| 4M($86 +/#L2,# -/# ./#bwt/# 1#( 3b# 4/#sa5# / $ $ /6:+b*b*,wstr,,,c-b-bw -bt. 3-3-3q3b?fpOdbwtbwtbwtbwt4-4-?5-5-5q5bfpV^bwtbwtu ~       ; Ib /usr/include/usr/include/bits/usr/lib/gcc/x86_64-redhat-linux/3.4.6/includebwtindex.ctime.htypes.hstddef.hzlib.hzconf.hbwt.hstdint.hstdio.hlibio.hgetopt.h *7 w+2y rT:,T:-7WdVT:V2$%VT:V2$#VT:V2&%VT:V2$VT:V2&VT:V2$%VT:V~:Vƀ2&*VT:V~:Vƀ2$F,~_-GU~:dVT:V2rVT:V!78:pŀ8: rVbwa_indexca:p:r[bwa_index] Pack FASTA... %.2f sec [bwa_index] Update BWT... bwtswunknown algorithm: '%s'.[bwa_index] Reverse the packed sequence... [bwa_index] Construct BWT for the packed sequence... [bwa_index] %.2f seconds elapse. [bwa_index] Construct BWT for the reverse packed sequence... [bwa_index] Update reverse BWT... [bwa_index] Construct SA from BWT and Occ... [bwa_index] Construct SA from reverse BWT and Occ... Usage: bwa index [-a bwtsw|div|is] [-c] Options: -a STR BWT construction algorithm: bwtsw or is [is] -p STR prefix of the index [same as fasta name] -c build color-space index Warning: `-a bwtsw' does not work for short genomes, while `-a is' and `-a div' do not work not for long genomes. Please choose `-a' according to the length of the genome. [bwa_index] Pack nucleotide FASTA... [bwa_index] Convert nucleotide PAC to color PAC... $tIx < BBB B(D0D8Fx < BBB B(D0D8Fwwww  w( w0w8 w'U':ScSmS  S'T'VdVm V]m ]_m _m '6P8aPPP|PYbP \f\m\  \X^ ^dkPnuPxPP:+S S S S+SSPUjSgjPjjUjS'6P9@PCrP\ \+S S+S S S>bwa_index, 2EV[2EV[_shortbufshort int_IO_lock_tstderr_IO_buf_end_IO_write_endunsigned intuint32_tsa_intv_markers/home/pubseq/BioSw/bwa/bwa-0.5.9_flags_poslong long unsigned inttmp_argvgzFile_IO_backup_base_offsetclock_t_fileno__pad3prefixargcsize_t_IO_write_base_IO_read_basestr2_IO_save_end__resultargvprimary__s1_lenchar_mode_IO_read_ptrbwt_tbwtindex.c_IO_markerlong long int__s2_len_IO_save_basecnt_tableoptind__pad1__pad2__pad4__pad5__clock_t__s1_vtable_offsetvoidpstdoutunsigned char_IO_read_endlong intbwt_size_locklong unsigned int_old_offsetstdin_IO_FILEbwa_index_sbuf_IO_write_ptrbwtint_toptargstr3n_sa__off_tsigned charshort unsigned intalgo_type__func___chain_flags2seq_len_cur_column_nextGNU C 3.4.6 20060404 (Red Hat 3.4.6-8)is_color__off64_t_unused2_IO_buf_baseGCC: (GNU) 3.4.6 20060404 (Red Hat 3.4.6-8).symtab.strtab.shstrtab.rela.text.data.bss.debug_abbrev.rela.debug_info.rela.debug_line.rodata.rodata.str1.1.rodata.str1.8.rodata.cst4.rela.debug_frame.rela.eh_frame.debug_loc.rela.debug_pubnames.rela.debug_aranges.debug_ranges.debug_str.note.GNU-stack.comment @  2&P ,P 1P eD >?DP UPHRa i2gx2htX`R08XRT Rt0R0`0 GK#K#-x#, 0=       '.5<CJZ`gn&2bwtindex.c__func__.0.LC14bwa_indexgetoptoptargoptindstrlencallocerr_xzopen_coreclockstderrfwritebns_fasta2bntseqfprintfgzclosestrcpybwa_pac_rev_corebwt_restore_bwtbwt_bwtupdate_corebwt_dump_bwtbwt_destroybwt_cal_sabwt_dump_safree__strduperr_fatalfputcbwa_pac2cspacbwt_pac2bwtbwt_bwtgen( 2Y  $ ) 3;BQ Y f!kx} #"#$$  %). #@I"V$^z$ 0  h "$"@$H]ds {  h"$ - $&/':(B)GTY #kt"$  &'() # ""$*H$Rcjy  &*+) #"$$5<K (S [&k*x+) #",,,,- Hbg Nl s./ `        P &5 : AP U pu z $  ! # " #+ 2 A @I  X 0] j o #  " 1 ( ) 1 ( ) 2 2 -    % i) g. 9 /@ G N @U \  j q | ' /  K S  V      l  2 :* &9 H W f ^u    A    )   ! 1 A Q Pa 1  t  f       % M0 zD :_ m    V  c \     * / 59  > V |[ e j t  "     V B V   , 6 (: DLx_ ixq  4 }! B    B  0$ / ,9 DmL ^ c k t    E   { M   $ 1