main module

mavis.pairing.main.main(inputs, output, annotations, product_sequence_files=None, flanking_call_distance=0, split_call_distance=10, contig_call_distance=0, spanning_call_distance=5, **kwargs)[source]
Parameters:
  • inputs (List of str) – list of input files to read
  • output (str) – path to the output directory
  • flanking_call_distance (int) – pairing distance for pairing with an event called by flanking read pair
  • split_call_distance (int) – pairing distance for pairing with an event called by split read
  • contig_call_distance (int) – pairing distance for pairing with an event called by contig or spanning read