pairing module¶

mavis.pairing.pairing.equivalent_events(ev1, ev2, reference_transcripts, DISTANCES=None, product_sequences=None)[source]¶

mavis.pairing.pairing.predict_transcriptome_breakpoint(breakpoint, transcript)[source]¶

for a given genomic breakpoint and the target transcript. Predicts the possible transcriptomic breakpoints that would be expected based on the splicing model for abrogated splice sites

Parameters:	breakpoint (Breakpoint) – the genomic breakpoint transcript (usTranscript) – the transcript

see theory - pairing similar events