util module¶

mavis.pipeline.util.build_batch_id(prefix='', suffix='', size=6)[source]¶

mavis.pipeline.util.filter_on_overlap(bpps, regions_by_reference_name)[source]¶

mavis.pipeline.util.get_blat_version()[source]¶

mavis.pipeline.util.get_samtools_version()[source]¶

mavis.pipeline.util.log(*pos, *, time_stamp=True)[source]¶

mavis.pipeline.util.mkdirp(dirname)[source]¶

mavis.pipeline.util.output_tabbed_file(bpps, filename)[source]¶

mavis.pipeline.util.read_inputs(inputs, force_stranded=False, **kwargs)[source]¶

mavis.pipeline.util.write_bed_file(filename, bed_rows)[source]¶