Literature

[Chen-2009]

Chen,K. et al. (2009) BreakDancer: an algorithm for high-resolution mapping of genomic structural variation. Nat. Methods, 6, 677–681.

[Chen-2016]

Chen,X. et al. (2016) Manta: rapid detection of structural variants and indels for germline and cancer sequencing applications. Bioinformatics, 32, 1220–1222.

[den-Dunnen-2016]

den Dunnen,J.T. et al. (2016) HGVS Recommendations for the Description of Sequence Variants: 2016 Update. Hum. Mutat., 37, 564–569.

[Iyer-2011]

Iyer,M.K. et al. (2011) ChimeraScan: a tool for identifying chimeric transcription in sequencing data. Bioinformatics, 27, 2903–2904.

[MacDonald-2014]

MacDonald,J.R. et al. (2014) The Database of Genomic Variants: a curated collection of structural variation in the human genome. Nucleic Acids Res., 42, D986–92.

[McPherson-2011]

McPherson,A. et al. (2011) deFuse: an algorithm for gene fusion discovery in tumor RNA-Seq data. PLoS Comput. Biol., 7, e1001138.

[Rausch-2012]

Rausch,T. et al. (2012) DELLY: structural variant discovery by integrated paired-end and split-read analysis. Bioinformatics, 28, i333–i339.

[Robertson-2010]

Robertson,G. et al. (2010) De novo assembly and analysis of RNA-seq data. Nat. Methods, 7, 909–912.

[Yates-2016]

Yates,A. et al. (2016) Ensembl 2016. Nucleic Acids Res., 44, D710–D716.

[Ye-2009]

Ye,K. et al. (2009) Pindel: a pattern growth approach to detect break points of large deletions and medium sized insertions from paired-end short reads. Bioinformatics, 25, 2865–2871.