[2019-09-30 11:33:57,552] multiqc [DEBUG ] No MultiQC config found: /home/rcorbett/python-2.7-venv/lib/python2.7/site-packages/multiqc_config.yaml [2019-09-30 11:33:57,552] multiqc [DEBUG ] No MultiQC config found: /home/rcorbett/.multiqc_config.yaml [2019-09-30 11:33:57,553] multiqc [DEBUG ] No MultiQC config found: multiqc_config.yaml [2019-09-30 11:33:57,553] multiqc [DEBUG ] Command used: /home/rcorbett/python-2.7-venv/bin/multiqc -f -v -dd -1 ./flex_validation/merged ./flex_validation/merged.bam ./flex_validation/merged.bam.bai ./flex_validation/merged.bam.gcmets.txt ./flex_validation/merged.bam.gc.summary.txt ./flex_validation/merged.bam.pdf ./flex_validation/merged_gDNA ./flex_validation/merged_gDNA.bam ./flex_validation/merged_gDNA.bam.gcmets.txt ./flex_validation/merged_gDNA.bam.gc.summary.txt ./flex_validation/merged_gDNA.bam.pdf ./flex_validation/merged_NCC ./flex_validation/merged_NCC.bam ./flex_validation/merged_NCC.bam.gcmets.txt ./flex_validation/merged_NCC.bam.gc.summary.txt ./flex_validation/merged_NCC.bam.pdf ./flex_validation/merged_NTC ./flex_validation/merged_NTC.bam ./flex_validation/merged_NTC.bam.gcmets.txt ./flex_validation/merged_NTC.bam.gc.summary.txt ./flex_validation/merged_NTC.bam.pdf ./IX7563/merged_HL60_gDNA ./IX7563/merged_HL60_gDNA.bam ./IX7563/merged_HL60_gDNA.bam.gcmets.txt ./IX7563/merged_HL60_gDNA.bam.gc.summary.txt ./IX7563/merged_HL60_gDNA.bam.pdf ./IX7563/merged_livecell ./IX7563/merged_livecell.bam ./IX7563/merged_livecell.bam.gcmets.txt ./IX7563/merged_livecell.bam.gc.summary.txt ./IX7563/merged_livecell.bam.pdf ./IX7563/merged_NCC ./IX7563/merged_NCC.bam ./IX7563/merged_NCC.bam.gcmets.txt ./IX7563/merged_NCC.bam.gc.summary.txt ./IX7563/merged_NCC.bam.pdf ./IX7563/merged_NTC ./IX7563/merged_NTC.bam ./IX7563/merged_NTC.bam.gcmets.txt ./IX7563/merged_NTC.bam.gc.summary.txt ./IX7563/merged_NTC.bam.pdf ./IX7564/merged_HL60_gDNA ./IX7564/merged_HL60_gDNA.bam ./IX7564/merged_HL60_gDNA.bam.gcmets.txt ./IX7564/merged_HL60_gDNA.bam.gc.summary.txt ./IX7564/merged_HL60_gDNA.bam.pdf ./IX7564/merged_livecell ./IX7564/merged_livecell.bam ./IX7564/merged_livecell.bam.gcmets.txt ./IX7564/merged_livecell.bam.gc.summary.txt ./IX7564/merged_livecell.bam.pdf ./IX7564/merged_NCC ./IX7564/merged_NCC.bam ./IX7564/merged_NCC.bam.gcmets.txt ./IX7564/merged_NCC.bam.gc.summary.txt ./IX7564/merged_NCC.bam.pdf ./IX7564/merged_NTC ./IX7564/merged_NTC.bam ./IX7564/merged_NTC.bam.gcmets.txt ./IX7564/merged_NTC.bam.gc.summary.txt ./IX7564/merged_NTC.bam.pdf ./IX7606/merged_HL60_gDNA ./IX7606/merged_HL60_gDNA.bam ./IX7606/merged_HL60_gDNA.bam.gcmets.txt ./IX7606/merged_HL60_gDNA.bam.gc.summary.txt ./IX7606/merged_HL60_gDNA.bam.pdf ./IX7606/merged_livecell ./IX7606/merged_livecell.bam ./IX7606/merged_livecell.bam.gcmets.txt ./IX7606/merged_livecell.bam.gc.summary.txt ./IX7606/merged_livecell.bam.pdf ./IX7606/merged_NCC ./IX7606/merged_NCC.bam ./IX7606/merged_NCC.bam.gcmets.txt ./IX7606/merged_NCC.bam.gc.summary.txt ./IX7606/merged_NCC.bam.pdf ./IX7606/merged_NTC ./IX7606/merged_NTC.bam ./IX7606/merged_NTC.bam.gcmets.txt ./IX7606/merged_NTC.bam.gc.summary.txt ./IX7606/merged_NTC.bam.pdf ./IX7607/merged_HL60_gDNA ./IX7607/merged_HL60_gDNA.bam ./IX7607/merged_HL60_gDNA.bam.gcmets.txt ./IX7607/merged_HL60_gDNA.bam.gc.summary.txt ./IX7607/merged_HL60_gDNA.bam.pdf ./IX7607/merged_livecell ./IX7607/merged_livecell.bam ./IX7607/merged_livecell.bam.gcmets.txt ./IX7607/merged_livecell.bam.gc.summary.txt ./IX7607/merged_livecell.bam.pdf ./IX7607/merged_NCC ./IX7607/merged_NCC.bam ./IX7607/merged_NCC.bam.gcmets.txt ./IX7607/merged_NCC.bam.gc.summary.txt ./IX7607/merged_NCC.bam.pdf ./IX7607/merged_NTC ./IX7607/merged_NTC.bam ./IX7607/merged_NTC.bam.gcmets.txt ./IX7607/merged_NTC.bam.gc.summary.txt ./IX7607/merged_NTC.bam.pdf ./IX7618/merged_livecell ./IX7618/merged_livecell.bam ./IX7618/merged_livecell.bam.gcmets.txt ./IX7618/merged_livecell.bam.gc.summary.txt ./IX7618/merged_livecell.bam.pdf ./IX7618/merged_NCC ./IX7618/merged_NCC.bam ./IX7618/merged_NCC.bam.gcmets.txt ./IX7618/merged_NCC.bam.gc.summary.txt ./IX7618/merged_NCC.bam.pdf ./IX7618/merged_NTC ./IX7618/merged_NTC.bam ./IX7618/merged_NTC.bam.gcmets.txt ./IX7618/merged_NTC.bam.gc.summary.txt ./IX7618/merged_NTC.bam.pdf ./IX7659/merged_livecell ./IX7659/merged_livecell.bam ./IX7659/merged_livecell.bam.gcmets.txt ./IX7659/merged_livecell.bam.gc.summary.txt ./IX7659/merged_livecell.bam.pdf ./IX7659/merged_NCC ./IX7659/merged_NCC.bam ./IX7659/merged_NCC.bam.gcmets.txt ./IX7659/merged_NCC.bam.gc.summary.txt ./IX7659/merged_NCC.bam.pdf ./IX7659/merged_NTC ./IX7659/merged_NTC.bam ./IX7659/merged_NTC.bam.gcmets.txt ./IX7659/merged_NTC.bam.gc.summary.txt ./IX7659/merged_NTC.bam.pdf [2019-09-30 11:33:58,420] multiqc [DEBUG ] Latest MultiQC version is v1.7 [2019-09-30 11:33:58,421] multiqc [INFO ] This is MultiQC v1.7 [2019-09-30 11:33:58,421] multiqc [DEBUG ] Command : /home/rcorbett/python-2.7-venv/bin/multiqc -f -v -dd -1 ./flex_validation/merged ./flex_validation/merged.bam ./flex_validation/merged.bam.bai ./flex_validation/merged.bam.gcmets.txt ./flex_validation/merged.bam.gc.summary.txt ./flex_validation/merged.bam.pdf ./flex_validation/merged_gDNA ./flex_validation/merged_gDNA.bam ./flex_validation/merged_gDNA.bam.gcmets.txt ./flex_validation/merged_gDNA.bam.gc.summary.txt ./flex_validation/merged_gDNA.bam.pdf ./flex_validation/merged_NCC ./flex_validation/merged_NCC.bam ./flex_validation/merged_NCC.bam.gcmets.txt ./flex_validation/merged_NCC.bam.gc.summary.txt ./flex_validation/merged_NCC.bam.pdf ./flex_validation/merged_NTC ./flex_validation/merged_NTC.bam ./flex_validation/merged_NTC.bam.gcmets.txt ./flex_validation/merged_NTC.bam.gc.summary.txt ./flex_validation/merged_NTC.bam.pdf ./IX7563/merged_HL60_gDNA ./IX7563/merged_HL60_gDNA.bam ./IX7563/merged_HL60_gDNA.bam.gcmets.txt ./IX7563/merged_HL60_gDNA.bam.gc.summary.txt ./IX7563/merged_HL60_gDNA.bam.pdf ./IX7563/merged_livecell ./IX7563/merged_livecell.bam ./IX7563/merged_livecell.bam.gcmets.txt ./IX7563/merged_livecell.bam.gc.summary.txt ./IX7563/merged_livecell.bam.pdf ./IX7563/merged_NCC ./IX7563/merged_NCC.bam ./IX7563/merged_NCC.bam.gcmets.txt ./IX7563/merged_NCC.bam.gc.summary.txt ./IX7563/merged_NCC.bam.pdf ./IX7563/merged_NTC ./IX7563/merged_NTC.bam ./IX7563/merged_NTC.bam.gcmets.txt ./IX7563/merged_NTC.bam.gc.summary.txt ./IX7563/merged_NTC.bam.pdf ./IX7564/merged_HL60_gDNA ./IX7564/merged_HL60_gDNA.bam ./IX7564/merged_HL60_gDNA.bam.gcmets.txt ./IX7564/merged_HL60_gDNA.bam.gc.summary.txt ./IX7564/merged_HL60_gDNA.bam.pdf ./IX7564/merged_livecell ./IX7564/merged_livecell.bam ./IX7564/merged_livecell.bam.gcmets.txt ./IX7564/merged_livecell.bam.gc.summary.txt ./IX7564/merged_livecell.bam.pdf ./IX7564/merged_NCC ./IX7564/merged_NCC.bam ./IX7564/merged_NCC.bam.gcmets.txt ./IX7564/merged_NCC.bam.gc.summary.txt ./IX7564/merged_NCC.bam.pdf ./IX7564/merged_NTC ./IX7564/merged_NTC.bam ./IX7564/merged_NTC.bam.gcmets.txt ./IX7564/merged_NTC.bam.gc.summary.txt ./IX7564/merged_NTC.bam.pdf ./IX7606/merged_HL60_gDNA ./IX7606/merged_HL60_gDNA.bam ./IX7606/merged_HL60_gDNA.bam.gcmets.txt ./IX7606/merged_HL60_gDNA.bam.gc.summary.txt ./IX7606/merged_HL60_gDNA.bam.pdf ./IX7606/merged_livecell ./IX7606/merged_livecell.bam ./IX7606/merged_livecell.bam.gcmets.txt ./IX7606/merged_livecell.bam.gc.summary.txt ./IX7606/merged_livecell.bam.pdf ./IX7606/merged_NCC ./IX7606/merged_NCC.bam ./IX7606/merged_NCC.bam.gcmets.txt ./IX7606/merged_NCC.bam.gc.summary.txt ./IX7606/merged_NCC.bam.pdf ./IX7606/merged_NTC ./IX7606/merged_NTC.bam ./IX7606/merged_NTC.bam.gcmets.txt ./IX7606/merged_NTC.bam.gc.summary.txt ./IX7606/merged_NTC.bam.pdf ./IX7607/merged_HL60_gDNA ./IX7607/merged_HL60_gDNA.bam ./IX7607/merged_HL60_gDNA.bam.gcmets.txt ./IX7607/merged_HL60_gDNA.bam.gc.summary.txt ./IX7607/merged_HL60_gDNA.bam.pdf ./IX7607/merged_livecell ./IX7607/merged_livecell.bam ./IX7607/merged_livecell.bam.gcmets.txt ./IX7607/merged_livecell.bam.gc.summary.txt ./IX7607/merged_livecell.bam.pdf ./IX7607/merged_NCC ./IX7607/merged_NCC.bam ./IX7607/merged_NCC.bam.gcmets.txt ./IX7607/merged_NCC.bam.gc.summary.txt ./IX7607/merged_NCC.bam.pdf ./IX7607/merged_NTC ./IX7607/merged_NTC.bam ./IX7607/merged_NTC.bam.gcmets.txt ./IX7607/merged_NTC.bam.gc.summary.txt ./IX7607/merged_NTC.bam.pdf ./IX7618/merged_livecell ./IX7618/merged_livecell.bam ./IX7618/merged_livecell.bam.gcmets.txt ./IX7618/merged_livecell.bam.gc.summary.txt ./IX7618/merged_livecell.bam.pdf ./IX7618/merged_NCC ./IX7618/merged_NCC.bam ./IX7618/merged_NCC.bam.gcmets.txt ./IX7618/merged_NCC.bam.gc.summary.txt ./IX7618/merged_NCC.bam.pdf ./IX7618/merged_NTC ./IX7618/merged_NTC.bam ./IX7618/merged_NTC.bam.gcmets.txt ./IX7618/merged_NTC.bam.gc.summary.txt ./IX7618/merged_NTC.bam.pdf ./IX7659/merged_livecell ./IX7659/merged_livecell.bam ./IX7659/merged_livecell.bam.gcmets.txt ./IX7659/merged_livecell.bam.gc.summary.txt ./IX7659/merged_livecell.bam.pdf ./IX7659/merged_NCC ./IX7659/merged_NCC.bam ./IX7659/merged_NCC.bam.gcmets.txt ./IX7659/merged_NCC.bam.gc.summary.txt ./IX7659/merged_NCC.bam.pdf ./IX7659/merged_NTC ./IX7659/merged_NTC.bam ./IX7659/merged_NTC.bam.gcmets.txt ./IX7659/merged_NTC.bam.gc.summary.txt ./IX7659/merged_NTC.bam.pdf [2019-09-30 11:33:58,421] multiqc [DEBUG ] Working dir : /projects/rcorbettprj2/TechD/10x_vs_inhouse/bams/inhouse/other_pools [2019-09-30 11:33:58,422] multiqc [INFO ] Template : default [2019-09-30 11:33:58,422] multiqc [INFO ] Searching './flex_validation/merged' [2019-09-30 11:33:58,422] multiqc [INFO ] Searching './flex_validation/merged.bam' [2019-09-30 11:33:58,422] multiqc [INFO ] Searching './flex_validation/merged.bam.bai' [2019-09-30 11:33:58,423] multiqc [INFO ] Searching './flex_validation/merged.bam.gcmets.txt' [2019-09-30 11:33:58,423] multiqc [INFO ] Searching './flex_validation/merged.bam.gc.summary.txt' [2019-09-30 11:33:58,423] multiqc [INFO ] Searching './flex_validation/merged.bam.pdf' [2019-09-30 11:33:58,424] multiqc [INFO ] Searching './flex_validation/merged_gDNA' [2019-09-30 11:33:58,424] multiqc [INFO ] Searching './flex_validation/merged_gDNA.bam' [2019-09-30 11:33:58,424] multiqc [INFO ] Searching './flex_validation/merged_gDNA.bam.gcmets.txt' [2019-09-30 11:33:58,424] multiqc [INFO ] Searching './flex_validation/merged_gDNA.bam.gc.summary.txt' [2019-09-30 11:33:58,425] multiqc [INFO ] Searching './flex_validation/merged_gDNA.bam.pdf' [2019-09-30 11:33:58,425] multiqc [INFO ] Searching './flex_validation/merged_NCC' [2019-09-30 11:33:58,425] multiqc [INFO ] Searching './flex_validation/merged_NCC.bam' [2019-09-30 11:33:58,425] multiqc [INFO ] Searching './flex_validation/merged_NCC.bam.gcmets.txt' [2019-09-30 11:33:58,425] multiqc [INFO ] Searching './flex_validation/merged_NCC.bam.gc.summary.txt' [2019-09-30 11:33:58,425] multiqc [INFO ] Searching './flex_validation/merged_NCC.bam.pdf' [2019-09-30 11:33:58,425] multiqc [INFO ] Searching './flex_validation/merged_NTC' [2019-09-30 11:33:58,426] multiqc [INFO ] Searching './flex_validation/merged_NTC.bam' [2019-09-30 11:33:58,426] multiqc [INFO ] Searching './flex_validation/merged_NTC.bam.gcmets.txt' [2019-09-30 11:33:58,426] multiqc [INFO ] Searching './flex_validation/merged_NTC.bam.gc.summary.txt' [2019-09-30 11:33:58,426] multiqc [INFO ] Searching './flex_validation/merged_NTC.bam.pdf' [2019-09-30 11:33:58,426] multiqc [INFO ] Searching './IX7563/merged_HL60_gDNA' [2019-09-30 11:33:58,426] multiqc [INFO ] Searching './IX7563/merged_HL60_gDNA.bam' [2019-09-30 11:33:58,427] multiqc [INFO ] Searching './IX7563/merged_HL60_gDNA.bam.gcmets.txt' [2019-09-30 11:33:58,427] multiqc [INFO ] Searching './IX7563/merged_HL60_gDNA.bam.gc.summary.txt' [2019-09-30 11:33:58,427] multiqc [INFO ] Searching './IX7563/merged_HL60_gDNA.bam.pdf' [2019-09-30 11:33:58,427] multiqc [INFO ] Searching './IX7563/merged_livecell' [2019-09-30 11:33:58,427] multiqc [INFO ] Searching './IX7563/merged_livecell.bam' [2019-09-30 11:33:58,427] multiqc [INFO ] Searching './IX7563/merged_livecell.bam.gcmets.txt' [2019-09-30 11:33:58,428] multiqc [INFO ] Searching './IX7563/merged_livecell.bam.gc.summary.txt' [2019-09-30 11:33:58,428] multiqc [INFO ] Searching './IX7563/merged_livecell.bam.pdf' [2019-09-30 11:33:58,428] multiqc [INFO ] Searching './IX7563/merged_NCC' [2019-09-30 11:33:58,428] multiqc [INFO ] Searching './IX7563/merged_NCC.bam' [2019-09-30 11:33:58,428] multiqc [INFO ] Searching './IX7563/merged_NCC.bam.gcmets.txt' [2019-09-30 11:33:58,428] multiqc [INFO ] Searching './IX7563/merged_NCC.bam.gc.summary.txt' [2019-09-30 11:33:58,428] multiqc [INFO ] Searching './IX7563/merged_NCC.bam.pdf' [2019-09-30 11:33:58,428] multiqc [INFO ] Searching './IX7563/merged_NTC' [2019-09-30 11:33:58,429] multiqc [INFO ] Searching './IX7563/merged_NTC.bam' [2019-09-30 11:33:58,429] multiqc [INFO ] Searching './IX7563/merged_NTC.bam.gcmets.txt' [2019-09-30 11:33:58,429] multiqc [INFO ] Searching './IX7563/merged_NTC.bam.gc.summary.txt' [2019-09-30 11:33:58,429] multiqc [INFO ] Searching './IX7563/merged_NTC.bam.pdf' [2019-09-30 11:33:58,429] multiqc [INFO ] Searching './IX7564/merged_HL60_gDNA' [2019-09-30 11:33:58,429] multiqc [INFO ] Searching './IX7564/merged_HL60_gDNA.bam' [2019-09-30 11:33:58,429] multiqc [INFO ] Searching './IX7564/merged_HL60_gDNA.bam.gcmets.txt' [2019-09-30 11:33:58,430] multiqc [INFO ] Searching './IX7564/merged_HL60_gDNA.bam.gc.summary.txt' [2019-09-30 11:33:58,430] multiqc [INFO ] Searching './IX7564/merged_HL60_gDNA.bam.pdf' [2019-09-30 11:33:58,430] multiqc [INFO ] Searching './IX7564/merged_livecell' [2019-09-30 11:33:58,430] multiqc [INFO ] Searching './IX7564/merged_livecell.bam' [2019-09-30 11:33:58,430] multiqc [INFO ] Searching './IX7564/merged_livecell.bam.gcmets.txt' [2019-09-30 11:33:58,430] multiqc [INFO ] Searching './IX7564/merged_livecell.bam.gc.summary.txt' [2019-09-30 11:33:58,430] multiqc [INFO ] Searching './IX7564/merged_livecell.bam.pdf' [2019-09-30 11:33:58,431] multiqc [INFO ] Searching './IX7564/merged_NCC' [2019-09-30 11:33:58,431] multiqc [INFO ] Searching './IX7564/merged_NCC.bam' [2019-09-30 11:33:58,431] multiqc [INFO ] Searching './IX7564/merged_NCC.bam.gcmets.txt' [2019-09-30 11:33:58,431] multiqc [INFO ] Searching './IX7564/merged_NCC.bam.gc.summary.txt' [2019-09-30 11:33:58,431] multiqc [INFO ] Searching './IX7564/merged_NCC.bam.pdf' [2019-09-30 11:33:58,431] multiqc [INFO ] Searching './IX7564/merged_NTC' [2019-09-30 11:33:58,431] multiqc [INFO ] Searching './IX7564/merged_NTC.bam' [2019-09-30 11:33:58,431] multiqc [INFO ] Searching './IX7564/merged_NTC.bam.gcmets.txt' [2019-09-30 11:33:58,432] multiqc [INFO ] Searching './IX7564/merged_NTC.bam.gc.summary.txt' [2019-09-30 11:33:58,432] multiqc [INFO ] Searching 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[2019-09-30 11:33:58,433] multiqc [INFO ] Searching './IX7606/merged_NCC.bam' [2019-09-30 11:33:58,433] multiqc [INFO ] Searching './IX7606/merged_NCC.bam.gcmets.txt' [2019-09-30 11:33:58,434] multiqc [INFO ] Searching './IX7606/merged_NCC.bam.gc.summary.txt' [2019-09-30 11:33:58,434] multiqc [INFO ] Searching './IX7606/merged_NCC.bam.pdf' [2019-09-30 11:33:58,434] multiqc [INFO ] Searching './IX7606/merged_NTC' [2019-09-30 11:33:58,434] multiqc [INFO ] Searching './IX7606/merged_NTC.bam' [2019-09-30 11:33:58,434] multiqc [INFO ] Searching './IX7606/merged_NTC.bam.gcmets.txt' [2019-09-30 11:33:58,434] multiqc [INFO ] Searching './IX7606/merged_NTC.bam.gc.summary.txt' [2019-09-30 11:33:58,434] multiqc [INFO ] Searching './IX7606/merged_NTC.bam.pdf' [2019-09-30 11:33:58,435] multiqc [INFO ] Searching './IX7607/merged_HL60_gDNA' [2019-09-30 11:33:58,435] multiqc [INFO ] Searching './IX7607/merged_HL60_gDNA.bam' [2019-09-30 11:33:58,435] multiqc [INFO ] Searching './IX7607/merged_HL60_gDNA.bam.gcmets.txt' [2019-09-30 11:33:58,435] multiqc [INFO ] Searching './IX7607/merged_HL60_gDNA.bam.gc.summary.txt' [2019-09-30 11:33:58,435] multiqc [INFO ] Searching './IX7607/merged_HL60_gDNA.bam.pdf' [2019-09-30 11:33:58,435] multiqc [INFO ] Searching './IX7607/merged_livecell' [2019-09-30 11:33:58,435] multiqc [INFO ] Searching './IX7607/merged_livecell.bam' [2019-09-30 11:33:58,436] multiqc [INFO ] Searching './IX7607/merged_livecell.bam.gcmets.txt' [2019-09-30 11:33:58,436] multiqc [INFO ] Searching './IX7607/merged_livecell.bam.gc.summary.txt' [2019-09-30 11:33:58,436] multiqc [INFO ] Searching './IX7607/merged_livecell.bam.pdf' [2019-09-30 11:33:58,436] multiqc [INFO ] Searching './IX7607/merged_NCC' [2019-09-30 11:33:58,436] multiqc [INFO ] Searching './IX7607/merged_NCC.bam' [2019-09-30 11:33:58,436] multiqc [INFO ] Searching './IX7607/merged_NCC.bam.gcmets.txt' [2019-09-30 11:33:58,436] multiqc [INFO ] Searching './IX7607/merged_NCC.bam.gc.summary.txt' [2019-09-30 11:33:58,436] multiqc [INFO ] Searching './IX7607/merged_NCC.bam.pdf' [2019-09-30 11:33:58,437] multiqc [INFO ] Searching './IX7607/merged_NTC' [2019-09-30 11:33:58,437] multiqc [INFO ] Searching './IX7607/merged_NTC.bam' [2019-09-30 11:33:58,437] multiqc [INFO ] Searching './IX7607/merged_NTC.bam.gcmets.txt' [2019-09-30 11:33:58,437] multiqc [INFO ] Searching './IX7607/merged_NTC.bam.gc.summary.txt' [2019-09-30 11:33:58,437] multiqc [INFO ] Searching './IX7607/merged_NTC.bam.pdf' [2019-09-30 11:33:58,437] multiqc [INFO ] Searching './IX7618/merged_livecell' [2019-09-30 11:33:58,437] multiqc [INFO ] Searching './IX7618/merged_livecell.bam' [2019-09-30 11:33:58,438] multiqc [INFO ] Searching './IX7618/merged_livecell.bam.gcmets.txt' [2019-09-30 11:33:58,438] multiqc [INFO ] Searching './IX7618/merged_livecell.bam.gc.summary.txt' [2019-09-30 11:33:58,438] multiqc [INFO ] Searching './IX7618/merged_livecell.bam.pdf' [2019-09-30 11:33:58,438] multiqc [INFO ] Searching './IX7618/merged_NCC' [2019-09-30 11:33:58,438] multiqc [INFO ] Searching './IX7618/merged_NCC.bam' [2019-09-30 11:33:58,438] multiqc [INFO ] Searching './IX7618/merged_NCC.bam.gcmets.txt' [2019-09-30 11:33:58,438] multiqc [INFO ] Searching './IX7618/merged_NCC.bam.gc.summary.txt' [2019-09-30 11:33:58,438] multiqc [INFO ] Searching './IX7618/merged_NCC.bam.pdf' [2019-09-30 11:33:58,439] multiqc [INFO ] Searching './IX7618/merged_NTC' [2019-09-30 11:33:58,439] multiqc [INFO ] Searching './IX7618/merged_NTC.bam' [2019-09-30 11:33:58,439] multiqc [INFO ] Searching './IX7618/merged_NTC.bam.gcmets.txt' [2019-09-30 11:33:58,439] multiqc [INFO ] Searching './IX7618/merged_NTC.bam.gc.summary.txt' [2019-09-30 11:33:58,439] multiqc [INFO ] Searching './IX7618/merged_NTC.bam.pdf' [2019-09-30 11:33:58,439] multiqc [INFO ] Searching './IX7659/merged_livecell' [2019-09-30 11:33:58,439] multiqc [INFO ] Searching './IX7659/merged_livecell.bam' [2019-09-30 11:33:58,440] multiqc [INFO ] Searching './IX7659/merged_livecell.bam.gcmets.txt' [2019-09-30 11:33:58,440] multiqc [INFO ] Searching './IX7659/merged_livecell.bam.gc.summary.txt' [2019-09-30 11:33:58,440] multiqc [INFO ] Searching './IX7659/merged_livecell.bam.pdf' [2019-09-30 11:33:58,440] multiqc [INFO ] Searching './IX7659/merged_NCC' [2019-09-30 11:33:58,440] multiqc [INFO ] Searching './IX7659/merged_NCC.bam' [2019-09-30 11:33:58,440] multiqc [INFO ] Searching './IX7659/merged_NCC.bam.gcmets.txt' [2019-09-30 11:33:58,440] multiqc [INFO ] Searching './IX7659/merged_NCC.bam.gc.summary.txt' [2019-09-30 11:33:58,441] multiqc [INFO ] Searching './IX7659/merged_NCC.bam.pdf' [2019-09-30 11:33:58,441] multiqc [INFO ] Searching './IX7659/merged_NTC' [2019-09-30 11:33:58,441] multiqc [INFO ] Searching './IX7659/merged_NTC.bam' [2019-09-30 11:33:58,441] multiqc [INFO ] Searching './IX7659/merged_NTC.bam.gcmets.txt' [2019-09-30 11:33:58,441] multiqc [INFO ] Searching './IX7659/merged_NTC.bam.gc.summary.txt' [2019-09-30 11:33:58,441] multiqc [INFO ] Searching './IX7659/merged_NTC.bam.pdf' [2019-09-30 11:33:58,442] multiqc [DEBUG ] Analysing modules: custom_content, conpair, peddy, methylQA, phantompeakqualtools, qualimap, preseq, quast, qorts, rna_seqc, rsem, rseqc, busco, goleft_indexcov, disambiguate, supernova, deeptools, sargasso, verifybamid, mirtrace, happy, homer, macs2, theta2, snpeff, gatk, htseq, bcftools, featureCounts, dedup, damageprofiler, picard, prokka, samblaster, samtools, bamtools, jellyfish, vcftools, longranger, stacks, bbmap, bismark, biscuit, hicexplorer, hicup, hicpro, salmon, kallisto, slamdunk, star, hisat2, tophat, bowtie2, bowtie1, kat, leehom, adapterRemoval, clipandmerge, cutadapt, flexbar, trimmomatic, skewer, sortmerna, biobloomtools, fastq_screen, afterqc, fastp, fastqc, minionqc, clusterflow, bcl2fastq, interop, flash [2019-09-30 11:33:58,445] multiqc [DEBUG ] Using temporary directory for creating report: /projects/bioSCRATCH/rcorbett/tmp03N5xR [2019-09-30 11:33:59,361] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: qualimapReport.html [2019-09-30 11:34:02,705] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: merged.bam [2019-09-30 11:34:02,706] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: merged.bam.bai [2019-09-30 11:34:02,944] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: merged.bam.pdf [2019-09-30 11:34:02,961] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: qualimapReport.html [2019-09-30 11:34:06,073] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: merged_gDNA.bam [2019-09-30 11:34:06,335] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: merged_gDNA.bam.pdf [2019-09-30 11:34:06,350] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: qualimapReport.html [2019-09-30 11:34:09,607] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: merged_NCC.bam [2019-09-30 11:34:09,844] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: merged_NCC.bam.pdf [2019-09-30 11:34:09,860] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: qualimapReport.html [2019-09-30 11:34:12,945] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: merged_NTC.bam [2019-09-30 11:34:13,180] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: merged_NTC.bam.pdf [2019-09-30 11:34:13,196] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: qualimapReport.html [2019-09-30 11:34:16,253] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: merged_HL60_gDNA.bam [2019-09-30 11:34:16,496] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: merged_HL60_gDNA.bam.pdf [2019-09-30 11:34:16,512] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: qualimapReport.html [2019-09-30 11:34:19,715] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: merged_livecell.bam [2019-09-30 11:34:19,948] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: merged_livecell.bam.pdf [2019-09-30 11:34:19,964] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: qualimapReport.html [2019-09-30 11:34:23,114] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: merged_NCC.bam [2019-09-30 11:34:23,360] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: merged_NCC.bam.pdf [2019-09-30 11:34:23,377] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: qualimapReport.html [2019-09-30 11:34:26,697] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: merged_NTC.bam [2019-09-30 11:34:26,953] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: merged_NTC.bam.pdf [2019-09-30 11:34:26,970] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: qualimapReport.html [2019-09-30 11:34:30,136] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: merged_HL60_gDNA.bam [2019-09-30 11:34:30,368] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: merged_HL60_gDNA.bam.pdf [2019-09-30 11:34:30,385] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: qualimapReport.html [2019-09-30 11:34:33,612] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: merged_livecell.bam [2019-09-30 11:34:33,853] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: merged_livecell.bam.pdf [2019-09-30 11:34:33,870] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: qualimapReport.html [2019-09-30 11:34:37,048] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: merged_NCC.bam [2019-09-30 11:34:37,282] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: merged_NCC.bam.pdf [2019-09-30 11:34:37,300] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: qualimapReport.html [2019-09-30 11:34:40,659] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: merged_NTC.bam [2019-09-30 11:34:40,913] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: merged_NTC.bam.pdf [2019-09-30 11:34:40,931] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: qualimapReport.html [2019-09-30 11:34:44,188] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: merged_HL60_gDNA.bam [2019-09-30 11:34:44,444] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: merged_HL60_gDNA.bam.pdf [2019-09-30 11:34:44,461] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: qualimapReport.html [2019-09-30 11:34:47,692] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: merged_livecell.bam [2019-09-30 11:34:48,029] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: merged_livecell.bam.pdf [2019-09-30 11:34:48,039] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: qualimapReport.html [2019-09-30 11:34:51,077] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: merged_NCC.bam [2019-09-30 11:34:51,323] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: merged_NCC.bam.pdf [2019-09-30 11:34:51,340] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: qualimapReport.html [2019-09-30 11:34:54,473] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: merged_NTC.bam [2019-09-30 11:34:54,742] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: merged_NTC.bam.pdf [2019-09-30 11:34:54,760] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: qualimapReport.html [2019-09-30 11:34:57,845] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: merged_HL60_gDNA.bam [2019-09-30 11:34:58,086] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: merged_HL60_gDNA.bam.pdf [2019-09-30 11:34:58,103] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: qualimapReport.html [2019-09-30 11:35:01,265] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: merged_livecell.bam [2019-09-30 11:35:01,596] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: merged_livecell.bam.pdf [2019-09-30 11:35:01,605] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: qualimapReport.html [2019-09-30 11:35:04,796] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: merged_NCC.bam [2019-09-30 11:35:05,050] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: merged_NCC.bam.pdf [2019-09-30 11:35:05,067] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: qualimapReport.html [2019-09-30 11:35:08,280] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: merged_NTC.bam [2019-09-30 11:35:08,553] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: merged_NTC.bam.pdf [2019-09-30 11:35:08,571] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: qualimapReport.html [2019-09-30 11:35:11,864] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: merged_livecell.bam [2019-09-30 11:35:12,101] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: merged_livecell.bam.pdf [2019-09-30 11:35:12,118] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: qualimapReport.html [2019-09-30 11:35:15,353] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: merged_NCC.bam [2019-09-30 11:35:15,620] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: merged_NCC.bam.pdf [2019-09-30 11:35:15,638] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: qualimapReport.html [2019-09-30 11:35:18,850] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: merged_NTC.bam [2019-09-30 11:35:19,105] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: merged_NTC.bam.pdf [2019-09-30 11:35:19,124] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: qualimapReport.html [2019-09-30 11:35:22,338] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: merged_livecell.bam [2019-09-30 11:35:22,607] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: merged_livecell.bam.pdf [2019-09-30 11:35:22,632] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: qualimapReport.html [2019-09-30 11:35:25,912] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: merged_NCC.bam [2019-09-30 11:35:26,167] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: merged_NCC.bam.pdf [2019-09-30 11:35:26,184] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: qualimapReport.html [2019-09-30 11:35:29,352] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: merged_NTC.bam [2019-09-30 11:35:29,582] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: merged_NTC.bam.pdf [2019-09-30 11:35:30,191] multiqc [DEBUG ] No samples found: custom_content [2019-09-30 11:35:30,200] multiqc [DEBUG ] No samples found: conpair [2019-09-30 11:35:30,210] multiqc [DEBUG ] No samples found: peddy [2019-09-30 11:35:30,219] multiqc [DEBUG ] No samples found: methylQA [2019-09-30 11:35:30,228] multiqc [DEBUG ] No samples found: phantompeakqualtools [2019-09-30 11:35:31,641] multiqc.modules.qualimap.QM_BamQC [DEBUG ] Using default Qualimap thresholds: 1, 5, 10, 30, 50 [2019-09-30 11:35:32,384] multiqc.modules.qualimap.qualimap [INFO ] Found 26 BamQC reports [2019-09-30 11:35:32,391] multiqc [DEBUG ] No samples found: preseq [2019-09-30 11:35:32,401] multiqc [DEBUG ] No samples found: quast [2019-09-30 11:35:32,410] multiqc [DEBUG ] No samples found: qorts [2019-09-30 11:35:32,419] multiqc [DEBUG ] No samples found: rna_seqc [2019-09-30 11:35:32,425] multiqc [DEBUG ] No samples found: rsem [2019-09-30 11:35:32,441] multiqc [DEBUG ] No samples found: rseqc [2019-09-30 11:35:32,447] multiqc [DEBUG ] No samples found: busco [2019-09-30 11:35:32,455] multiqc [DEBUG ] No samples found: goleft_indexcov [2019-09-30 11:35:32,461] multiqc [DEBUG ] No samples found: disambiguate [2019-09-30 11:35:32,471] multiqc [DEBUG ] No samples found: supernova [2019-09-30 11:35:32,489] multiqc [DEBUG ] No samples found: deeptools [2019-09-30 11:35:32,498] multiqc [DEBUG ] No samples found: sargasso [2019-09-30 11:35:32,508] multiqc [DEBUG ] No samples found: verifybamid [2019-09-30 11:35:32,517] multiqc [DEBUG ] No samples found: mirtrace [2019-09-30 11:35:32,527] multiqc [DEBUG ] No samples found: happy [2019-09-30 11:35:32,538] multiqc [DEBUG ] No samples found: homer [2019-09-30 11:35:32,548] multiqc [DEBUG ] No samples found: macs2 [2019-09-30 11:35:32,557] multiqc [DEBUG ] No samples found: theta2 [2019-09-30 11:35:32,566] multiqc [DEBUG ] No samples found: snpeff [2019-09-30 11:35:32,579] multiqc [DEBUG ] No samples found: gatk [2019-09-30 11:35:32,588] multiqc [DEBUG ] No samples found: htseq [2019-09-30 11:35:32,599] multiqc [DEBUG ] No samples found: bcftools [2019-09-30 11:35:32,608] multiqc [DEBUG ] No samples found: featureCounts [2019-09-30 11:35:32,617] multiqc [DEBUG ] No samples found: dedup [2019-09-30 11:35:32,626] multiqc [DEBUG ] No samples found: damageprofiler [2019-09-30 11:35:32,654] multiqc.modules.picard.GcBiasMetrics [DEBUG ] Duplicate sample name found in merged.bam.gc.summary.txt! Overwriting: flex_validation | merged [2019-09-30 11:35:32,660] multiqc.modules.picard.GcBiasMetrics [DEBUG ] Duplicate sample name found in merged_gDNA.bam.gc.summary.txt! Overwriting: flex_validation | merged_gDNA [2019-09-30 11:35:32,666] multiqc.modules.picard.GcBiasMetrics [DEBUG ] Duplicate sample name found in merged_NCC.bam.gc.summary.txt! Overwriting: flex_validation | merged_NCC [2019-09-30 11:35:32,672] multiqc.modules.picard.GcBiasMetrics [DEBUG ] Duplicate sample name found in merged_NTC.bam.gc.summary.txt! Overwriting: flex_validation | merged_NTC [2019-09-30 11:35:32,678] multiqc.modules.picard.GcBiasMetrics [DEBUG ] Duplicate sample name found in merged_HL60_gDNA.bam.gc.summary.txt! Overwriting: IX7563 | merged_HL60_gDNA [2019-09-30 11:35:32,683] multiqc.modules.picard.GcBiasMetrics [DEBUG ] Duplicate sample name found in merged_livecell.bam.gc.summary.txt! Overwriting: IX7563 | merged_livecell [2019-09-30 11:35:32,690] multiqc.modules.picard.GcBiasMetrics [DEBUG ] Duplicate sample name found in merged_NCC.bam.gc.summary.txt! Overwriting: IX7563 | merged_NCC [2019-09-30 11:35:32,695] multiqc.modules.picard.GcBiasMetrics [DEBUG ] Duplicate sample name found in merged_NTC.bam.gc.summary.txt! Overwriting: IX7563 | merged_NTC [2019-09-30 11:35:32,701] multiqc.modules.picard.GcBiasMetrics [DEBUG ] Duplicate sample name found in merged_HL60_gDNA.bam.gc.summary.txt! Overwriting: IX7564 | merged_HL60_gDNA [2019-09-30 11:35:32,707] multiqc.modules.picard.GcBiasMetrics [DEBUG ] Duplicate sample name found in merged_livecell.bam.gc.summary.txt! Overwriting: IX7564 | merged_livecell [2019-09-30 11:35:32,713] multiqc.modules.picard.GcBiasMetrics [DEBUG ] Duplicate sample name found in merged_NCC.bam.gc.summary.txt! Overwriting: IX7564 | merged_NCC [2019-09-30 11:35:32,718] multiqc.modules.picard.GcBiasMetrics [DEBUG ] Duplicate sample name found in merged_NTC.bam.gc.summary.txt! Overwriting: IX7564 | merged_NTC [2019-09-30 11:35:32,723] multiqc.modules.picard.GcBiasMetrics [DEBUG ] Duplicate sample name found in merged_HL60_gDNA.bam.gc.summary.txt! Overwriting: IX7606 | merged_HL60_gDNA [2019-09-30 11:35:32,729] multiqc.modules.picard.GcBiasMetrics [DEBUG ] Duplicate sample name found in merged_livecell.bam.gc.summary.txt! Overwriting: IX7606 | merged_livecell [2019-09-30 11:35:32,735] multiqc.modules.picard.GcBiasMetrics [DEBUG ] Duplicate sample name found in merged_NCC.bam.gc.summary.txt! Overwriting: IX7606 | merged_NCC [2019-09-30 11:35:32,740] multiqc.modules.picard.GcBiasMetrics [DEBUG ] Duplicate sample name found in merged_NTC.bam.gc.summary.txt! Overwriting: IX7606 | merged_NTC [2019-09-30 11:35:32,744] multiqc.modules.picard.GcBiasMetrics [DEBUG ] Duplicate sample name found in merged_HL60_gDNA.bam.gc.summary.txt! Overwriting: IX7607 | merged_HL60_gDNA [2019-09-30 11:35:32,750] multiqc.modules.picard.GcBiasMetrics [DEBUG ] Duplicate sample name found in merged_livecell.bam.gc.summary.txt! Overwriting: IX7607 | merged_livecell [2019-09-30 11:35:32,754] multiqc.modules.picard.GcBiasMetrics [DEBUG ] Duplicate sample name found in merged_NCC.bam.gc.summary.txt! Overwriting: IX7607 | merged_NCC [2019-09-30 11:35:32,759] multiqc.modules.picard.GcBiasMetrics [DEBUG ] Duplicate sample name found in merged_NTC.bam.gc.summary.txt! Overwriting: IX7607 | merged_NTC [2019-09-30 11:35:32,764] multiqc.modules.picard.GcBiasMetrics [DEBUG ] Duplicate sample name found in merged_livecell.bam.gc.summary.txt! Overwriting: IX7618 | merged_livecell [2019-09-30 11:35:32,769] multiqc.modules.picard.GcBiasMetrics [DEBUG ] Duplicate sample name found in merged_NCC.bam.gc.summary.txt! Overwriting: IX7618 | merged_NCC [2019-09-30 11:35:32,773] multiqc.modules.picard.GcBiasMetrics [DEBUG ] Duplicate sample name found in merged_NTC.bam.gc.summary.txt! Overwriting: IX7618 | merged_NTC [2019-09-30 11:35:32,778] multiqc.modules.picard.GcBiasMetrics [DEBUG ] Duplicate sample name found in merged_livecell.bam.gc.summary.txt! Overwriting: IX7659 | merged_livecell [2019-09-30 11:35:32,783] multiqc.modules.picard.GcBiasMetrics [DEBUG ] Duplicate sample name found in merged_NCC.bam.gc.summary.txt! Overwriting: IX7659 | merged_NCC [2019-09-30 11:35:32,788] multiqc.modules.picard.GcBiasMetrics [DEBUG ] Duplicate sample name found in merged_NTC.bam.gc.summary.txt! Overwriting: IX7659 | merged_NTC [2019-09-30 11:35:32,817] multiqc.modules.picard.picard [INFO ] Found 26 GcBiasMetrics reports [2019-09-30 11:35:32,827] multiqc [DEBUG ] No samples found: prokka [2019-09-30 11:35:32,836] multiqc [DEBUG ] No samples found: samblaster [2019-09-30 11:35:32,850] multiqc [DEBUG ] No samples found: samtools [2019-09-30 11:35:32,860] multiqc [DEBUG ] No samples found: bamtools [2019-09-30 11:35:32,869] multiqc [DEBUG ] No samples found: jellyfish [2019-09-30 11:35:32,882] multiqc [DEBUG ] No samples found: vcftools [2019-09-30 11:35:32,892] multiqc [DEBUG ] No samples found: longranger [2019-09-30 11:35:32,901] multiqc [DEBUG ] No samples found: stacks [2019-09-30 11:35:32,923] multiqc [DEBUG ] No samples found: bbmap [2019-09-30 11:35:32,932] multiqc [DEBUG ] No samples found: bismark [2019-09-30 11:35:32,942] multiqc [DEBUG ] No samples found: biscuit [2019-09-30 11:35:32,951] multiqc [DEBUG ] No samples found: hicexplorer [2019-09-30 11:35:32,961] multiqc [DEBUG ] No samples found: hicup [2019-09-30 11:35:32,971] multiqc [DEBUG ] No samples found: hicpro [2019-09-30 11:35:32,980] multiqc [DEBUG ] No samples found: salmon [2019-09-30 11:35:32,989] multiqc [DEBUG ] No samples found: kallisto [2019-09-30 11:35:32,999] multiqc [DEBUG ] No samples found: slamdunk [2019-09-30 11:35:33,008] multiqc [DEBUG ] No samples found: star [2019-09-30 11:35:33,017] multiqc [DEBUG ] No samples found: hisat2 [2019-09-30 11:35:33,027] multiqc [DEBUG ] No samples found: tophat [2019-09-30 11:35:33,036] multiqc [DEBUG ] No samples found: bowtie2 [2019-09-30 11:35:33,047] multiqc [DEBUG ] No samples found: bowtie1 [2019-09-30 11:35:33,056] multiqc [DEBUG ] No samples found: kat [2019-09-30 11:35:33,065] multiqc [DEBUG ] No samples found: leehom [2019-09-30 11:35:33,075] multiqc [DEBUG ] No samples found: adapterRemoval [2019-09-30 11:35:33,084] multiqc [DEBUG ] No samples found: clipandmerge [2019-09-30 11:35:33,095] multiqc [DEBUG ] No samples found: cutadapt [2019-09-30 11:35:33,105] multiqc [DEBUG ] No samples found: flexbar [2019-09-30 11:35:33,114] multiqc [DEBUG ] No samples found: trimmomatic [2019-09-30 11:35:33,123] multiqc [DEBUG ] No samples found: skewer [2019-09-30 11:35:33,132] multiqc [DEBUG ] No samples found: sortmerna [2019-09-30 11:35:33,142] multiqc [DEBUG ] No samples found: biobloomtools [2019-09-30 11:35:33,151] multiqc [DEBUG ] No samples found: fastq_screen [2019-09-30 11:35:33,160] multiqc [DEBUG ] No samples found: afterqc [2019-09-30 11:35:33,171] multiqc [DEBUG ] No samples found: fastp [2019-09-30 11:35:33,182] multiqc [DEBUG ] No samples found: fastqc [2019-09-30 11:35:33,192] multiqc [DEBUG ] No samples found: minionqc [2019-09-30 11:35:33,202] multiqc [DEBUG ] No samples found: clusterflow [2019-09-30 11:35:33,213] multiqc [DEBUG ] No samples found: bcl2fastq [2019-09-30 11:35:33,223] multiqc [DEBUG ] No samples found: interop [2019-09-30 11:35:33,232] multiqc [DEBUG ] No samples found: flash [2019-09-30 11:35:33,423] multiqc [INFO ] Compressing plot data [2019-09-30 11:35:36,454] multiqc [WARNING] Deleting : multiqc_report.html (-f was specified) [2019-09-30 11:35:36,458] multiqc [WARNING] Deleting : multiqc_data (-f was specified) [2019-09-30 11:35:36,480] multiqc [INFO ] Report : multiqc_report.html [2019-09-30 11:35:36,480] multiqc [INFO ] Data : multiqc_data [2019-09-30 11:35:36,484] multiqc [DEBUG ] Moving data file from '/projects/bioSCRATCH/rcorbett/tmp03N5xR/multiqc_data/multiqc_picard_gcbias.txt' to '/projects/rcorbettprj2/TechD/10x_vs_inhouse/bams/inhouse/other_pools/multiqc_data' [2019-09-30 11:35:36,501] multiqc [DEBUG ] Moving data file from '/projects/bioSCRATCH/rcorbett/tmp03N5xR/multiqc_data/multiqc_general_stats.txt' to '/projects/rcorbettprj2/TechD/10x_vs_inhouse/bams/inhouse/other_pools/multiqc_data' [2019-09-30 11:35:36,528] multiqc [DEBUG ] Moving data file from '/projects/bioSCRATCH/rcorbett/tmp03N5xR/multiqc_data/multiqc_sources.txt' to '/projects/rcorbettprj2/TechD/10x_vs_inhouse/bams/inhouse/other_pools/multiqc_data' [2019-09-30 11:35:36,549] multiqc [DEBUG ] Moving data file from '/projects/bioSCRATCH/rcorbett/tmp03N5xR/multiqc_data/multiqc_data.json' to '/projects/rcorbettprj2/TechD/10x_vs_inhouse/bams/inhouse/other_pools/multiqc_data' [2019-09-30 11:35:37,658] multiqc [INFO ] MultiQC complete