2019-12-02 16:33:55,850 NanoPlot 1.19.0 started with arguments Namespace(N50=False, alength=False, bam=None, barcoded=False, color='#4CB391', cram=None, downsample=None, dpi=100, drop_outliers=False, fasta=None, fastq=None, fastq_minimal=None, fastq_rich=None, font_scale=1, format='png', listcolors=False, loglength=False, maxlength=None, minlength=None, minqual=None, no_N50=False, outdir='/home/aldente/private/Projects/Library_TechD/IX7933/AnalyzedData/IX7933-1./Nanopore/Data/current/BaseCalls/concat_fastq/Nanoplot', percentqual=False, pickle=None, plots=['kde', 'dot'], prefix='', raw=False, readtype='1D', runtime_until=None, store=False, summary=['/home/aldente/private/Projects/Library_TechD/IX7933/AnalyzedData/IX7933-1./Nanopore/Data/current/BaseCalls/concat_fastq/PAE14529_concat_sequencing_summary.txt'], threads=4, title=None, verbose=False)
2019-12-02 16:33:55,850 Python version is: 3.6.8 |Anaconda, Inc.| (default, Dec 30 2018, 01:22:34)  [GCC 7.3.0]
2019-12-02 16:33:55,885 Nanoplotter: valid output format png
2019-12-02 16:33:55,913 Nanoget: Collecting metrics from summary file /home/aldente/private/Projects/Library_TechD/IX7933/AnalyzedData/IX7933-1./Nanopore/Data/current/BaseCalls/concat_fastq/PAE14529_concat_sequencing_summary.txt for 1D sequencing
2019-12-02 16:34:59,150 Nanoget: Finished collecting statistics from summary file /home/aldente/private/Projects/Library_TechD/IX7933/AnalyzedData/IX7933-1./Nanopore/Data/current/BaseCalls/concat_fastq/PAE14529_concat_sequencing_summary.txt
2019-12-02 16:35:14,763 Reduced DataFrame memory usage from 4925.675260543823Mb to 2483.5339136123657Mb
2019-12-02 16:35:33,635 Nanoget: Gathered all metrics of 21701449 reads
2019-12-02 16:35:58,043 Calculated statistics
2019-12-02 16:35:58,047 Using sequenced read lengths for plotting.
2019-12-02 16:35:58,050 Nanoplotter: Valid color #4CB391.
2019-12-02 16:35:59,311 Nanoplotter: Creating length plots for Read length.
2019-12-02 16:35:59,384 Nanoplotter: Using 21701449 reads maximum of 1936874bp.
2019-12-02 16:39:53,533 Created length plots
2019-12-02 16:39:56,477 Nanoplotter: Creating Read lengths vs Average read quality plots using statistics from 21701449 reads.
2019-12-02 16:43:20,454 Created LengthvsQual plot
2019-12-02 16:43:20,455 Nanoplotter: Creating heatmap of reads per channel using 21701449 reads.
2019-12-02 16:43:21,670 Created spatialheatmap for succesfull basecalls.
2019-12-02 16:43:27,373 Nanoplotter: Creating timeplots using 21701449 reads.
2019-12-02 16:45:42,212 Created timeplots.
2019-12-02 16:45:42,212 Writing html report.
2019-12-02 16:50:59,378 Finished!