Module Section Sample Name Source Picard GcBiasDetailMetrics K003454-K003455-K003456-K003457_4_lanes_dupsFlagged /projects/rcorbettprj2/TechD/MGI/round2/K003454-K003455-K003456-K003457_4_lanes_dupsFlagged.bam.gcmets.txt Picard GcBiasDetailMetrics sBC_pBC_NA24149_round1 /projects/rcorbettprj2/TechD/MGI/round2/CGEN/sBC_pBC_NA24149_round1.bam.gcmets.txt Picard GcBiasDetailMetrics sBC_pBC_NA24149_round3 /projects/rcorbettprj2/TechD/MGI/round2/CGEN/sBC_pBC_NA24149_round3.bam.gcmets.txt Picard GcBiasDetailMetrics sBC_pBC_NA24149_round2 /projects/rcorbettprj2/TechD/MGI/round2/CGEN/sBC_pBC_NA24149_round2.bam.gcmets.txt Picard GcBiasDetailMetrics K003450-K003451-K003452-K003453_4_lanes_dupsFlagged /projects/rcorbettprj2/TechD/MGI/round2/K003450-K003451-K003452-K003453_4_lanes_dupsFlagged.bam.gcmets.txt Picard GcBiasDetailMetrics sBC_pBC_NA24143_round3 /projects/rcorbettprj2/TechD/MGI/round2/CGEN/sBC_pBC_NA24143_round3.bam.gcmets.txt Picard GcBiasDetailMetrics K003446-K003447-K003448-K003449_4_lanes_dupsFlagged /projects/rcorbettprj2/TechD/MGI/round2/K003446-K003447-K003448-K003449_4_lanes_dupsFlagged.bam.gcmets.txt Picard GcBiasDetailMetrics sBC_pBC_NA24143_round2 /projects/rcorbettprj2/TechD/MGI/round2/CGEN/sBC_pBC_NA24143_round2.bam.gcmets.txt Picard GcBiasDetailMetrics sBC_pBC_NA24143_round1 /projects/rcorbettprj2/TechD/MGI/round2/CGEN/sBC_pBC_NA24143_round1.bam.gcmets.txt Picard GcBiasDetailMetrics sBC_pBC_NA24385_round2 /projects/rcorbettprj2/TechD/MGI/round2/CGEN/sBC_pBC_NA24385_round2.bam.gcmets.txt Picard GcBiasDetailMetrics POG1047_T_1_lane3 /projects/rcorbettprj2/TechD/MGI/round2/POG1047_T_1_lane3.bam.gcmets.txt Picard GcBiasDetailMetrics POG1047_T_1_lane2 /projects/rcorbettprj2/TechD/MGI/round2/POG1047_T_1_lane2.bam.gcmets.txt Picard GcBiasDetailMetrics POG1047_T_1_lane4 /projects/rcorbettprj2/TechD/MGI/round2/POG1047_T_1_lane4.bam.gcmets.txt Picard GcBiasDetailMetrics POG1047_N_1_lane /projects/rcorbettprj2/TechD/MGI/round2/POG1047_N_1_lane.bam.gcmets.txt Picard GcBiasDetailMetrics sBC_pBC_NA24385_round1 /projects/rcorbettprj2/TechD/MGI/round2/CGEN/sBC_pBC_NA24385_round1.bam.gcmets.txt Picard GcBiasDetailMetrics sBC_pBC_NA24385_round3 /projects/rcorbettprj2/TechD/MGI/round2/CGEN/sBC_pBC_NA24385_round3.bam.gcmets.txt Picard GcBiasSummaryMetrics K003454-K003455-K003456-K003457_4_lanes_dupsFlagged /projects/rcorbettprj2/TechD/MGI/round2/K003454-K003455-K003456-K003457_4_lanes_dupsFlagged.bam.gc.summary.txt Picard GcBiasSummaryMetrics sBC_pBC_NA24149_round1 /projects/rcorbettprj2/TechD/MGI/round2/CGEN/sBC_pBC_NA24149_round1.bam.gc.summary.txt Picard GcBiasSummaryMetrics sBC_pBC_NA24149_round3 /projects/rcorbettprj2/TechD/MGI/round2/CGEN/sBC_pBC_NA24149_round3.bam.gc.summary.txt Picard GcBiasSummaryMetrics sBC_pBC_NA24149_round2 /projects/rcorbettprj2/TechD/MGI/round2/CGEN/sBC_pBC_NA24149_round2.bam.gc.summary.txt Picard GcBiasSummaryMetrics K003450-K003451-K003452-K003453_4_lanes_dupsFlagged /projects/rcorbettprj2/TechD/MGI/round2/K003450-K003451-K003452-K003453_4_lanes_dupsFlagged.bam.gc.summary.txt Picard GcBiasSummaryMetrics sBC_pBC_NA24143_round3 /projects/rcorbettprj2/TechD/MGI/round2/CGEN/sBC_pBC_NA24143_round3.bam.gc.summary.txt Picard GcBiasSummaryMetrics K003446-K003447-K003448-K003449_4_lanes_dupsFlagged /projects/rcorbettprj2/TechD/MGI/round2/K003446-K003447-K003448-K003449_4_lanes_dupsFlagged.bam.gc.summary.txt Picard GcBiasSummaryMetrics sBC_pBC_NA24143_round2 /projects/rcorbettprj2/TechD/MGI/round2/CGEN/sBC_pBC_NA24143_round2.bam.gc.summary.txt Picard GcBiasSummaryMetrics sBC_pBC_NA24143_round1 /projects/rcorbettprj2/TechD/MGI/round2/CGEN/sBC_pBC_NA24143_round1.bam.gc.summary.txt Picard GcBiasSummaryMetrics sBC_pBC_NA24385_round2 /projects/rcorbettprj2/TechD/MGI/round2/CGEN/sBC_pBC_NA24385_round2.bam.gc.summary.txt Picard GcBiasSummaryMetrics POG1047_T_1_lane3 /projects/rcorbettprj2/TechD/MGI/round2/POG1047_T_1_lane3.bam.gc.summary.txt Picard GcBiasSummaryMetrics POG1047_T_1_lane2 /projects/rcorbettprj2/TechD/MGI/round2/POG1047_T_1_lane2.bam.gc.summary.txt Picard GcBiasSummaryMetrics POG1047_T_1_lane4 /projects/rcorbettprj2/TechD/MGI/round2/POG1047_T_1_lane4.bam.gc.summary.txt Picard GcBiasSummaryMetrics POG1047_N_1_lane /projects/rcorbettprj2/TechD/MGI/round2/POG1047_N_1_lane.bam.gc.summary.txt Picard GcBiasSummaryMetrics sBC_pBC_NA24385_round1 /projects/rcorbettprj2/TechD/MGI/round2/CGEN/sBC_pBC_NA24385_round1.bam.gc.summary.txt Picard GcBiasSummaryMetrics sBC_pBC_NA24385_round3 /projects/rcorbettprj2/TechD/MGI/round2/CGEN/sBC_pBC_NA24385_round3.bam.gc.summary.txt Samtools stats K003454-K003455-K003456-K003457_4_lanes_dupsFlagged /projects/rcorbettprj2/TechD/MGI/round2/K003454-K003455-K003456-K003457_4_lanes_dupsFlagged.bam.stats Samtools stats sBC_pBC_NA24149_round1 /projects/rcorbettprj2/TechD/MGI/round2/CGEN/sBC_pBC_NA24149_round1.bam.stats Samtools stats sBC_pBC_NA24149_round3 /projects/rcorbettprj2/TechD/MGI/round2/CGEN/sBC_pBC_NA24149_round3.bam.stats Samtools stats sBC_pBC_NA24149_round2 /projects/rcorbettprj2/TechD/MGI/round2/CGEN/sBC_pBC_NA24149_round2.bam.stats Samtools stats K003450-K003451-K003452-K003453_4_lanes_dupsFlagged /projects/rcorbettprj2/TechD/MGI/round2/K003450-K003451-K003452-K003453_4_lanes_dupsFlagged.bam.stats Samtools stats sBC_pBC_NA24143_round3 /projects/rcorbettprj2/TechD/MGI/round2/CGEN/sBC_pBC_NA24143_round3.bam.stats Samtools stats K003446-K003447-K003448-K003449_4_lanes_dupsFlagged /projects/rcorbettprj2/TechD/MGI/round2/K003446-K003447-K003448-K003449_4_lanes_dupsFlagged.bam.stats Samtools stats sBC_pBC_NA24143_round2 /projects/rcorbettprj2/TechD/MGI/round2/CGEN/sBC_pBC_NA24143_round2.bam.stats Samtools stats sBC_pBC_NA24143_round1 /projects/rcorbettprj2/TechD/MGI/round2/CGEN/sBC_pBC_NA24143_round1.bam.stats Samtools stats sBC_pBC_NA24385_round2 /projects/rcorbettprj2/TechD/MGI/round2/CGEN/sBC_pBC_NA24385_round2.bam.stats Samtools stats POG1047_T_1_lane3 /projects/rcorbettprj2/TechD/MGI/round2/POG1047_T_1_lane3.bam.stats Samtools stats POG1047_T_1_lane2 /projects/rcorbettprj2/TechD/MGI/round2/POG1047_T_1_lane2.bam.stats Samtools stats POG1047_T_1_lane4 /projects/rcorbettprj2/TechD/MGI/round2/POG1047_T_1_lane4.bam.stats Samtools stats POG1047_N_1_lane /projects/rcorbettprj2/TechD/MGI/round2/POG1047_N_1_lane.bam.stats Samtools stats sBC_pBC_NA24385_round1 /projects/rcorbettprj2/TechD/MGI/round2/CGEN/sBC_pBC_NA24385_round1.bam.stats Samtools stats sBC_pBC_NA24385_round3 /projects/rcorbettprj2/TechD/MGI/round2/CGEN/sBC_pBC_NA24385_round3.bam.stats QualiMap mapped_gc_distribution K003454-K003455-K003456-K003457_4_lanes_dupsFlagged /projects/rcorbettprj2/TechD/MGI/round2/K003454-K003455-K003456-K003457_4_lanes_dupsFlagged/raw_data_qualimapReport/mapped_reads_gc-content_distribution.txt QualiMap mapped_gc_distribution sBC_pBC_NA24149_round1 /projects/rcorbettprj2/TechD/MGI/round2/CGEN/sBC_pBC_NA24149_round1/raw_data_qualimapReport/mapped_reads_gc-content_distribution.txt QualiMap mapped_gc_distribution K003446-K003447-K003448-K003449_4_lanes_dupsFlagged /projects/rcorbettprj2/TechD/MGI/round2/K003446-K003447-K003448-K003449_4_lanes_dupsFlagged/raw_data_qualimapReport/mapped_reads_gc-content_distribution.txt QualiMap mapped_gc_distribution sBC_pBC_NA24149_round3 /projects/rcorbettprj2/TechD/MGI/round2/CGEN/sBC_pBC_NA24149_round3/raw_data_qualimapReport/mapped_reads_gc-content_distribution.txt QualiMap mapped_gc_distribution sBC_pBC_NA24149_round2 /projects/rcorbettprj2/TechD/MGI/round2/CGEN/sBC_pBC_NA24149_round2/raw_data_qualimapReport/mapped_reads_gc-content_distribution.txt QualiMap mapped_gc_distribution K003450-K003451-K003452-K003453_4_lanes_dupsFlagged /projects/rcorbettprj2/TechD/MGI/round2/K003450-K003451-K003452-K003453_4_lanes_dupsFlagged/raw_data_qualimapReport/mapped_reads_gc-content_distribution.txt QualiMap mapped_gc_distribution sBC_pBC_NA24385_round3 /projects/rcorbettprj2/TechD/MGI/round2/CGEN/sBC_pBC_NA24385_round3/raw_data_qualimapReport/mapped_reads_gc-content_distribution.txt QualiMap mapped_gc_distribution sBC_pBC_NA24143_round3 /projects/rcorbettprj2/TechD/MGI/round2/CGEN/sBC_pBC_NA24143_round3/raw_data_qualimapReport/mapped_reads_gc-content_distribution.txt QualiMap mapped_gc_distribution sBC_pBC_NA24143_round2 /projects/rcorbettprj2/TechD/MGI/round2/CGEN/sBC_pBC_NA24143_round2/raw_data_qualimapReport/mapped_reads_gc-content_distribution.txt QualiMap mapped_gc_distribution sBC_pBC_NA24143_round1 /projects/rcorbettprj2/TechD/MGI/round2/CGEN/sBC_pBC_NA24143_round1/raw_data_qualimapReport/mapped_reads_gc-content_distribution.txt QualiMap mapped_gc_distribution sBC_pBC_NA24385_round2 /projects/rcorbettprj2/TechD/MGI/round2/CGEN/sBC_pBC_NA24385_round2/raw_data_qualimapReport/mapped_reads_gc-content_distribution.txt QualiMap mapped_gc_distribution POG1047_T_1_lane3 /projects/rcorbettprj2/TechD/MGI/round2/POG1047_T_1_lane3/raw_data_qualimapReport/mapped_reads_gc-content_distribution.txt QualiMap mapped_gc_distribution POG1047_T_1_lane2 /projects/rcorbettprj2/TechD/MGI/round2/POG1047_T_1_lane2/raw_data_qualimapReport/mapped_reads_gc-content_distribution.txt QualiMap mapped_gc_distribution sBC_pBC_NA24385_round1 /projects/rcorbettprj2/TechD/MGI/round2/CGEN/sBC_pBC_NA24385_round1/raw_data_qualimapReport/mapped_reads_gc-content_distribution.txt QualiMap mapped_gc_distribution POG1047_N_1_lane /projects/rcorbettprj2/TechD/MGI/round2/POG1047_N_1_lane/raw_data_qualimapReport/mapped_reads_gc-content_distribution.txt QualiMap mapped_gc_distribution POG1047_T_1_lane4 /projects/rcorbettprj2/TechD/MGI/round2/POG1047_T_1_lane4/raw_data_qualimapReport/mapped_reads_gc-content_distribution.txt QualiMap insert_size_histogram K003454-K003455-K003456-K003457_4_lanes_dupsFlagged /projects/rcorbettprj2/TechD/MGI/round2/K003454-K003455-K003456-K003457_4_lanes_dupsFlagged/raw_data_qualimapReport/insert_size_histogram.txt QualiMap insert_size_histogram sBC_pBC_NA24149_round1 /projects/rcorbettprj2/TechD/MGI/round2/CGEN/sBC_pBC_NA24149_round1/raw_data_qualimapReport/insert_size_histogram.txt QualiMap insert_size_histogram K003446-K003447-K003448-K003449_4_lanes_dupsFlagged /projects/rcorbettprj2/TechD/MGI/round2/K003446-K003447-K003448-K003449_4_lanes_dupsFlagged/raw_data_qualimapReport/insert_size_histogram.txt QualiMap insert_size_histogram sBC_pBC_NA24149_round3 /projects/rcorbettprj2/TechD/MGI/round2/CGEN/sBC_pBC_NA24149_round3/raw_data_qualimapReport/insert_size_histogram.txt QualiMap insert_size_histogram sBC_pBC_NA24149_round2 /projects/rcorbettprj2/TechD/MGI/round2/CGEN/sBC_pBC_NA24149_round2/raw_data_qualimapReport/insert_size_histogram.txt QualiMap insert_size_histogram K003450-K003451-K003452-K003453_4_lanes_dupsFlagged /projects/rcorbettprj2/TechD/MGI/round2/K003450-K003451-K003452-K003453_4_lanes_dupsFlagged/raw_data_qualimapReport/insert_size_histogram.txt QualiMap insert_size_histogram sBC_pBC_NA24385_round3 /projects/rcorbettprj2/TechD/MGI/round2/CGEN/sBC_pBC_NA24385_round3/raw_data_qualimapReport/insert_size_histogram.txt QualiMap insert_size_histogram sBC_pBC_NA24143_round3 /projects/rcorbettprj2/TechD/MGI/round2/CGEN/sBC_pBC_NA24143_round3/raw_data_qualimapReport/insert_size_histogram.txt QualiMap insert_size_histogram sBC_pBC_NA24143_round2 /projects/rcorbettprj2/TechD/MGI/round2/CGEN/sBC_pBC_NA24143_round2/raw_data_qualimapReport/insert_size_histogram.txt QualiMap insert_size_histogram sBC_pBC_NA24143_round1 /projects/rcorbettprj2/TechD/MGI/round2/CGEN/sBC_pBC_NA24143_round1/raw_data_qualimapReport/insert_size_histogram.txt QualiMap insert_size_histogram sBC_pBC_NA24385_round2 /projects/rcorbettprj2/TechD/MGI/round2/CGEN/sBC_pBC_NA24385_round2/raw_data_qualimapReport/insert_size_histogram.txt QualiMap insert_size_histogram POG1047_T_1_lane3 /projects/rcorbettprj2/TechD/MGI/round2/POG1047_T_1_lane3/raw_data_qualimapReport/insert_size_histogram.txt QualiMap insert_size_histogram POG1047_T_1_lane2 /projects/rcorbettprj2/TechD/MGI/round2/POG1047_T_1_lane2/raw_data_qualimapReport/insert_size_histogram.txt QualiMap insert_size_histogram sBC_pBC_NA24385_round1 /projects/rcorbettprj2/TechD/MGI/round2/CGEN/sBC_pBC_NA24385_round1/raw_data_qualimapReport/insert_size_histogram.txt QualiMap insert_size_histogram POG1047_N_1_lane /projects/rcorbettprj2/TechD/MGI/round2/POG1047_N_1_lane/raw_data_qualimapReport/insert_size_histogram.txt QualiMap insert_size_histogram POG1047_T_1_lane4 /projects/rcorbettprj2/TechD/MGI/round2/POG1047_T_1_lane4/raw_data_qualimapReport/insert_size_histogram.txt QualiMap genome_results K003454-K003455-K003456-K003457_4_lanes_dupsFlagged /projects/rcorbettprj2/TechD/MGI/round2/K003454-K003455-K003456-K003457_4_lanes_dupsFlagged/genome_results.txt QualiMap genome_results sBC_pBC_NA24149_round1 /projects/rcorbettprj2/TechD/MGI/round2/CGEN/sBC_pBC_NA24149_round1/genome_results.txt QualiMap genome_results K003446-K003447-K003448-K003449_4_lanes_dupsFlagged /projects/rcorbettprj2/TechD/MGI/round2/K003446-K003447-K003448-K003449_4_lanes_dupsFlagged/genome_results.txt QualiMap genome_results sBC_pBC_NA24149_round3 /projects/rcorbettprj2/TechD/MGI/round2/CGEN/sBC_pBC_NA24149_round3/genome_results.txt QualiMap genome_results sBC_pBC_NA24149_round2 /projects/rcorbettprj2/TechD/MGI/round2/CGEN/sBC_pBC_NA24149_round2/genome_results.txt QualiMap genome_results K003450-K003451-K003452-K003453_4_lanes_dupsFlagged /projects/rcorbettprj2/TechD/MGI/round2/K003450-K003451-K003452-K003453_4_lanes_dupsFlagged/genome_results.txt QualiMap genome_results sBC_pBC_NA24385_round3 /projects/rcorbettprj2/TechD/MGI/round2/CGEN/sBC_pBC_NA24385_round3/genome_results.txt QualiMap genome_results sBC_pBC_NA24143_round3 /projects/rcorbettprj2/TechD/MGI/round2/CGEN/sBC_pBC_NA24143_round3/genome_results.txt QualiMap genome_results sBC_pBC_NA24143_round2 /projects/rcorbettprj2/TechD/MGI/round2/CGEN/sBC_pBC_NA24143_round2/genome_results.txt QualiMap genome_results sBC_pBC_NA24143_round1 /projects/rcorbettprj2/TechD/MGI/round2/CGEN/sBC_pBC_NA24143_round1/genome_results.txt QualiMap genome_results sBC_pBC_NA24385_round2 /projects/rcorbettprj2/TechD/MGI/round2/CGEN/sBC_pBC_NA24385_round2/genome_results.txt QualiMap genome_results POG1047_T_1_lane3 /projects/rcorbettprj2/TechD/MGI/round2/POG1047_T_1_lane3/genome_results.txt QualiMap genome_results POG1047_T_1_lane2 /projects/rcorbettprj2/TechD/MGI/round2/POG1047_T_1_lane2/genome_results.txt QualiMap genome_results sBC_pBC_NA24385_round1 /projects/rcorbettprj2/TechD/MGI/round2/CGEN/sBC_pBC_NA24385_round1/genome_results.txt QualiMap genome_results POG1047_N_1_lane /projects/rcorbettprj2/TechD/MGI/round2/POG1047_N_1_lane/genome_results.txt QualiMap genome_results POG1047_T_1_lane4 /projects/rcorbettprj2/TechD/MGI/round2/POG1047_T_1_lane4/genome_results.txt QualiMap coverage_histogram K003454-K003455-K003456-K003457_4_lanes_dupsFlagged /projects/rcorbettprj2/TechD/MGI/round2/K003454-K003455-K003456-K003457_4_lanes_dupsFlagged/raw_data_qualimapReport/coverage_histogram.txt QualiMap coverage_histogram sBC_pBC_NA24149_round1 /projects/rcorbettprj2/TechD/MGI/round2/CGEN/sBC_pBC_NA24149_round1/raw_data_qualimapReport/coverage_histogram.txt QualiMap coverage_histogram K003446-K003447-K003448-K003449_4_lanes_dupsFlagged /projects/rcorbettprj2/TechD/MGI/round2/K003446-K003447-K003448-K003449_4_lanes_dupsFlagged/raw_data_qualimapReport/coverage_histogram.txt QualiMap coverage_histogram sBC_pBC_NA24149_round3 /projects/rcorbettprj2/TechD/MGI/round2/CGEN/sBC_pBC_NA24149_round3/raw_data_qualimapReport/coverage_histogram.txt QualiMap coverage_histogram sBC_pBC_NA24149_round2 /projects/rcorbettprj2/TechD/MGI/round2/CGEN/sBC_pBC_NA24149_round2/raw_data_qualimapReport/coverage_histogram.txt QualiMap coverage_histogram K003450-K003451-K003452-K003453_4_lanes_dupsFlagged /projects/rcorbettprj2/TechD/MGI/round2/K003450-K003451-K003452-K003453_4_lanes_dupsFlagged/raw_data_qualimapReport/coverage_histogram.txt QualiMap coverage_histogram sBC_pBC_NA24385_round3 /projects/rcorbettprj2/TechD/MGI/round2/CGEN/sBC_pBC_NA24385_round3/raw_data_qualimapReport/coverage_histogram.txt QualiMap coverage_histogram sBC_pBC_NA24143_round3 /projects/rcorbettprj2/TechD/MGI/round2/CGEN/sBC_pBC_NA24143_round3/raw_data_qualimapReport/coverage_histogram.txt QualiMap coverage_histogram sBC_pBC_NA24143_round2 /projects/rcorbettprj2/TechD/MGI/round2/CGEN/sBC_pBC_NA24143_round2/raw_data_qualimapReport/coverage_histogram.txt QualiMap coverage_histogram sBC_pBC_NA24143_round1 /projects/rcorbettprj2/TechD/MGI/round2/CGEN/sBC_pBC_NA24143_round1/raw_data_qualimapReport/coverage_histogram.txt QualiMap coverage_histogram sBC_pBC_NA24385_round2 /projects/rcorbettprj2/TechD/MGI/round2/CGEN/sBC_pBC_NA24385_round2/raw_data_qualimapReport/coverage_histogram.txt QualiMap coverage_histogram POG1047_T_1_lane3 /projects/rcorbettprj2/TechD/MGI/round2/POG1047_T_1_lane3/raw_data_qualimapReport/coverage_histogram.txt QualiMap coverage_histogram POG1047_T_1_lane2 /projects/rcorbettprj2/TechD/MGI/round2/POG1047_T_1_lane2/raw_data_qualimapReport/coverage_histogram.txt QualiMap coverage_histogram sBC_pBC_NA24385_round1 /projects/rcorbettprj2/TechD/MGI/round2/CGEN/sBC_pBC_NA24385_round1/raw_data_qualimapReport/coverage_histogram.txt QualiMap coverage_histogram POG1047_N_1_lane /projects/rcorbettprj2/TechD/MGI/round2/POG1047_N_1_lane/raw_data_qualimapReport/coverage_histogram.txt QualiMap coverage_histogram POG1047_T_1_lane4 /projects/rcorbettprj2/TechD/MGI/round2/POG1047_T_1_lane4/raw_data_qualimapReport/coverage_histogram.txt