[2019-12-31 16:20:13,932] multiqc [DEBUG ] No MultiQC config found: /home/rcorbett/python-2.7-venv/lib/python2.7/site-packages/multiqc_config.yaml [2019-12-31 16:20:13,933] multiqc [DEBUG ] No MultiQC config found: /home/rcorbett/.multiqc_config.yaml [2019-12-31 16:20:13,933] multiqc [DEBUG ] No MultiQC config found: multiqc_config.yaml [2019-12-31 16:20:13,933] multiqc [DEBUG ] Command used: /home/rcorbett/python-2.7-venv/bin/multiqc -f -v germline_retest round2 [2019-12-31 16:20:14,995] multiqc [DEBUG ] Latest MultiQC version is v1.8 [2019-12-31 16:20:14,995] multiqc [INFO ] This is MultiQC v1.8 [2019-12-31 16:20:14,995] multiqc [DEBUG ] Command : /home/rcorbett/python-2.7-venv/bin/multiqc -f -v germline_retest round2 [2019-12-31 16:20:14,996] multiqc [DEBUG ] Working dir : /projects/rcorbettprj2/TechD/MGI [2019-12-31 16:20:14,996] multiqc [INFO ] Template : default [2019-12-31 16:20:14,996] multiqc [WARNING] You are running MultiQC with Python 2.7.11 [2019-12-31 16:20:14,996] multiqc [WARNING] Please upgrade! MultiQC will soon drop support for Python < 3.6 [2019-12-31 16:20:14,996] multiqc [INFO ] Searching : /projects/rcorbettprj2/TechD/MGI/germline_retest [2019-12-31 16:20:14,997] multiqc [INFO ] Searching : /projects/rcorbettprj2/TechD/MGI/round2 [2019-12-31 16:20:14,997] multiqc [DEBUG ] Analysing modules: custom_content, conpair, peddy, methylQA, phantompeakqualtools, qualimap, preseq, quast, qorts, rna_seqc, rsem, rseqc, busco, goleft_indexcov, disambiguate, supernova, deeptools, sargasso, verifybamid, mirtrace, happy, homer, macs2, theta2, snpeff, gatk, htseq, bcftools, featureCounts, fgbio, dedup, damageprofiler, biobambam2, mtnucratio, picard, prokka, samblaster, samtools, sexdeterrmine, bamtools, jellyfish, vcftools, longranger, stacks, bbmap, bismark, biscuit, hicexplorer, hicup, hicpro, salmon, kallisto, slamdunk, star, hisat2, tophat, bowtie2, bowtie1, kat, leehom, adapterRemoval, clipandmerge, cutadapt, flexbar, trimmomatic, skewer, sortmerna, biobloomtools, fastq_screen, afterqc, fastp, fastqc, minionqc, mosdepth, clusterflow, bcl2fastq, interop, flash, seqyclean [2019-12-31 16:20:15,000] multiqc [DEBUG ] Using temporary directory for creating report: /projects/bioSCRATCH/rcorbett/tmpJGMQOZ [2019-12-31 16:20:15,680] multiqc [DEBUG ] Ignoring directory as matched fn_ignore_dirs: round2/multiqc_data [2019-12-31 16:20:16,303] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: V300032074_L01_undecoded_2.fq.gz [2019-12-31 16:20:16,304] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: V300032074_L01_undecoded_1.fq.gz [2019-12-31 16:20:16,304] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: tmp.sorted.dupmarked.bam [2019-12-31 16:20:16,304] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: tmp.sorted.dupmarked.bam.bai [2019-12-31 16:20:16,338] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: tmp.sorted.dupmarked.bam.stats [2019-12-31 16:20:16,394] multiqc [DEBUG ] 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longranger/invocation because it exceeded search pattern filesize limit: insert_size_across_reference.txt [2019-12-31 16:20:20,262] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: POG1047_T_3_lanes.bam.bai [2019-12-31 16:20:20,263] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: POG1047_N_1_lane.bam [2019-12-31 16:20:20,264] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: POG1047_N_1_lane.bam.bai [2019-12-31 16:20:20,264] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: POG1047_T_3_lanes.bam [2019-12-31 16:20:20,280] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: POG1047_N_1_lane.bam.stats [2019-12-31 16:20:20,330] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: POG1047_N_1_lane.bam.stats [2019-12-31 16:20:20,888] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: multiqc_report.html [2019-12-31 16:20:20,904] multiqc 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File ignored by longranger/invocation because it exceeded search pattern filesize limit: sBC_pBC_NA24143_round1.bam.stats [2019-12-31 16:20:54,447] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: sBC_pBC_NA24143_round2.bam [2019-12-31 16:20:54,448] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: sBC_pBC_NA24143_round2.bam.bai [2019-12-31 16:20:54,474] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: sBC_pBC_NA24143_round2.bam.gcmets.txt [2019-12-31 16:20:54,500] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: sBC_pBC_NA24143_round2.bam.gcmets.txt [2019-12-31 16:20:54,672] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: sBC_pBC_NA24143_round2.bam.sizes [2019-12-31 16:20:55,125] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: 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because it exceeded search pattern filesize limit: sBC_pBC_NA24143_round3.bam.sizes [2019-12-31 16:21:17,501] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: sBC_pBC_NA24143_round3.bam.sizes [2019-12-31 16:21:17,841] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: sBC_pBC_NA24143_round3.bam.sizes [2019-12-31 16:21:17,841] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: sBC_pBC_NA24143_round3.bam.sizes [2019-12-31 16:21:41,568] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: sBC_pBC_NA24143_round3.bam.stats [2019-12-31 16:21:41,622] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: sBC_pBC_NA24143_round3.bam.stats [2019-12-31 16:21:42,108] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: sBC_pBC_NA24149_round1.bam [2019-12-31 16:21:42,109] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: sBC_pBC_NA24149_round1.bam.bai [2019-12-31 16:21:42,126] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: sBC_pBC_NA24149_round1.bam.gcmets.txt [2019-12-31 16:21:42,148] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: sBC_pBC_NA24149_round1.bam.gcmets.txt [2019-12-31 16:21:42,294] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: sBC_pBC_NA24149_round1.bam.sizes [2019-12-31 16:21:42,744] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: sBC_pBC_NA24149_round1.bam.sizes [2019-12-31 16:21:42,744] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: sBC_pBC_NA24149_round1.bam.sizes [2019-12-31 16:21:42,744] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: sBC_pBC_NA24149_round1.bam.sizes [2019-12-31 16:21:43,080] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: sBC_pBC_NA24149_round1.bam.sizes [2019-12-31 16:21:43,080] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: sBC_pBC_NA24149_round1.bam.sizes [2019-12-31 16:22:05,123] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: sBC_pBC_NA24149_round1.bam.stats [2019-12-31 16:22:05,153] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: sBC_pBC_NA24149_round1.bam.stats [2019-12-31 16:22:05,446] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: sBC_pBC_NA24149_round2.bam.gcmets.txt [2019-12-31 16:22:05,464] multiqc [DEBUG ] File ignored by 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16:22:28,303] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: sBC_pBC_NA24149_round3.bam.sizes [2019-12-31 16:22:28,753] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: sBC_pBC_NA24149_round3.bam.sizes [2019-12-31 16:22:28,753] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: sBC_pBC_NA24149_round3.bam.sizes [2019-12-31 16:22:28,754] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: sBC_pBC_NA24149_round3.bam.sizes [2019-12-31 16:22:29,091] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: sBC_pBC_NA24149_round3.bam.sizes [2019-12-31 16:22:29,091] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: sBC_pBC_NA24149_round3.bam.sizes [2019-12-31 16:22:53,096] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: sBC_pBC_NA24149_round3.bam.stats [2019-12-31 16:22:53,147] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: sBC_pBC_NA24149_round3.bam.stats [2019-12-31 16:22:53,890] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: sBC_pBC_NA24385_round1.bam.gcmets.txt [2019-12-31 16:22:53,944] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: sBC_pBC_NA24385_round1.bam.gcmets.txt [2019-12-31 16:22:54,136] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: sBC_pBC_NA24385_round1.bam.sizes [2019-12-31 16:22:54,601] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: sBC_pBC_NA24385_round1.bam.sizes [2019-12-31 16:22:54,601] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: sBC_pBC_NA24385_round1.bam.sizes [2019-12-31 16:22:54,601] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: sBC_pBC_NA24385_round1.bam.sizes [2019-12-31 16:22:54,939] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: sBC_pBC_NA24385_round1.bam.sizes [2019-12-31 16:22:54,939] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: sBC_pBC_NA24385_round1.bam.sizes [2019-12-31 16:23:16,001] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: sBC_pBC_NA24385_round1.bam.stats [2019-12-31 16:23:16,027] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: sBC_pBC_NA24385_round1.bam.stats [2019-12-31 16:23:16,316] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: sBC_pBC_NA24385_round2.bam [2019-12-31 16:23:16,319] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: sBC_pBC_NA24385_round2.bam.bai [2019-12-31 16:23:16,331] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: sBC_pBC_NA24385_round2.bam.gcmets.txt [2019-12-31 16:23:16,354] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: sBC_pBC_NA24385_round2.bam.gcmets.txt [2019-12-31 16:23:16,456] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: sBC_pBC_NA24385_round2.bam.sizes [2019-12-31 16:23:16,774] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: sBC_pBC_NA24385_round2.bam.sizes [2019-12-31 16:23:16,774] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: sBC_pBC_NA24385_round2.bam.sizes [2019-12-31 16:23:16,775] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: sBC_pBC_NA24385_round2.bam.sizes [2019-12-31 16:23:17,221] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: sBC_pBC_NA24385_round2.bam.sizes [2019-12-31 16:23:17,221] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: sBC_pBC_NA24385_round2.bam.sizes [2019-12-31 16:23:42,725] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: sBC_pBC_NA24385_round2.bam.stats [2019-12-31 16:23:42,759] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: sBC_pBC_NA24385_round2.bam.stats [2019-12-31 16:23:43,262] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: sBC_pBC_NA24385_round3.bam [2019-12-31 16:23:43,263] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 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because it exceeded search pattern filesize limit: agogo.css [2019-12-31 16:24:05,676] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: basic.css [2019-12-31 16:24:05,700] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: basic.css [2019-12-31 16:24:05,787] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: doctools.js [2019-12-31 16:24:05,806] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: doctools.js [2019-12-31 16:24:05,870] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: jquery.js [2019-12-31 16:24:05,908] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: jquery.js [2019-12-31 16:24:06,031] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: pygments.css [2019-12-31 16:24:06,207] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: searchtools.js [2019-12-31 16:24:06,240] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: searchtools.js [2019-12-31 16:24:06,433] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: underscore.js [2019-12-31 16:24:06,465] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: underscore.js [2019-12-31 16:24:06,553] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: websupport.js [2019-12-31 16:24:06,587] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: websupport.js [2019-12-31 16:24:06,835] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: coverage_across_reference.txt [2019-12-31 16:24:06,886] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: coverage_across_reference.txt [2019-12-31 16:24:07,175] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: mapped_reads_nucleotide_content.txt [2019-12-31 16:24:07,206] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: mapped_reads_nucleotide_content.txt [2019-12-31 16:24:07,348] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: mapped_reads_clipping_profile.txt [2019-12-31 16:24:07,542] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: mapping_quality_across_reference.txt [2019-12-31 16:24:07,573] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 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limit: basic.css [2019-12-31 16:24:08,566] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: doctools.js [2019-12-31 16:24:08,595] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: doctools.js [2019-12-31 16:24:08,725] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: jquery.js [2019-12-31 16:24:08,760] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: jquery.js [2019-12-31 16:24:08,951] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: pygments.css [2019-12-31 16:24:09,144] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: searchtools.js [2019-12-31 16:24:09,177] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: searchtools.js [2019-12-31 16:24:09,369] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: underscore.js [2019-12-31 16:24:09,398] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: underscore.js [2019-12-31 16:24:09,481] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: websupport.js [2019-12-31 16:24:09,515] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: websupport.js [2019-12-31 16:24:09,760] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: coverage_across_reference.txt [2019-12-31 16:24:09,791] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: coverage_across_reference.txt [2019-12-31 16:24:10,087] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 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insert_size_across_reference.txt [2019-12-31 16:24:10,974] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: qualimapReport.html [2019-12-31 16:24:11,030] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: agogo.css [2019-12-31 16:24:11,064] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: agogo.css [2019-12-31 16:24:11,235] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: basic.css [2019-12-31 16:24:11,268] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: basic.css [2019-12-31 16:24:11,467] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: doctools.js [2019-12-31 16:24:11,506] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: doctools.js [2019-12-31 16:24:11,644] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: jquery.js [2019-12-31 16:24:11,681] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: jquery.js [2019-12-31 16:24:11,884] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: pygments.css [2019-12-31 16:24:12,110] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: searchtools.js [2019-12-31 16:24:12,146] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: searchtools.js [2019-12-31 16:24:12,337] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: underscore.js [2019-12-31 16:24:12,368] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: underscore.js [2019-12-31 16:24:12,452] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: websupport.js [2019-12-31 16:24:12,489] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: websupport.js [2019-12-31 16:24:12,736] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: coverage_across_reference.txt [2019-12-31 16:24:12,770] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: coverage_across_reference.txt [2019-12-31 16:24:13,067] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: mapped_reads_nucleotide_content.txt [2019-12-31 16:24:13,100] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: mapped_reads_nucleotide_content.txt [2019-12-31 16:24:13,243] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: mapped_reads_clipping_profile.txt [2019-12-31 16:24:13,436] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: mapping_quality_across_reference.txt [2019-12-31 16:24:13,469] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: mapping_quality_across_reference.txt [2019-12-31 16:24:13,753] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: insert_size_across_reference.txt [2019-12-31 16:24:13,783] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: insert_size_across_reference.txt [2019-12-31 16:24:13,957] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: qualimapReport.html [2019-12-31 16:24:14,011] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: agogo.css [2019-12-31 16:24:14,042] multiqc [DEBUG ] File ignored by 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exceeded search pattern filesize limit: pygments.css [2019-12-31 16:24:15,043] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: searchtools.js [2019-12-31 16:24:15,079] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: searchtools.js [2019-12-31 16:24:15,272] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: underscore.js [2019-12-31 16:24:15,300] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: underscore.js [2019-12-31 16:24:15,388] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: websupport.js [2019-12-31 16:24:15,437] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: websupport.js [2019-12-31 16:24:15,683] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: coverage_across_reference.txt [2019-12-31 16:24:15,717] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: coverage_across_reference.txt [2019-12-31 16:24:16,022] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: mapped_reads_nucleotide_content.txt [2019-12-31 16:24:16,053] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: mapped_reads_nucleotide_content.txt [2019-12-31 16:24:16,199] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: mapped_reads_clipping_profile.txt [2019-12-31 16:24:16,395] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: mapping_quality_across_reference.txt [2019-12-31 16:24:16,426] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 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limit: basic.css [2019-12-31 16:24:17,400] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: doctools.js [2019-12-31 16:24:17,429] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: doctools.js [2019-12-31 16:24:17,566] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: jquery.js [2019-12-31 16:24:17,603] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: jquery.js [2019-12-31 16:24:17,789] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: pygments.css [2019-12-31 16:24:18,004] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: searchtools.js [2019-12-31 16:24:18,037] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: searchtools.js [2019-12-31 16:24:18,228] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: underscore.js [2019-12-31 16:24:18,258] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: underscore.js [2019-12-31 16:24:18,343] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: websupport.js [2019-12-31 16:24:18,382] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: websupport.js [2019-12-31 16:24:18,629] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: coverage_across_reference.txt [2019-12-31 16:24:18,662] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: coverage_across_reference.txt [2019-12-31 16:24:18,955] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: mapped_reads_nucleotide_content.txt [2019-12-31 16:24:18,987] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: mapped_reads_nucleotide_content.txt [2019-12-31 16:24:19,146] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: mapped_reads_clipping_profile.txt [2019-12-31 16:24:19,351] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: mapping_quality_across_reference.txt [2019-12-31 16:24:19,386] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: mapping_quality_across_reference.txt [2019-12-31 16:24:19,675] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: insert_size_across_reference.txt [2019-12-31 16:24:19,710] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: insert_size_across_reference.txt [2019-12-31 16:24:19,881] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: qualimapReport.html [2019-12-31 16:24:19,937] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: agogo.css [2019-12-31 16:24:19,996] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: agogo.css [2019-12-31 16:24:20,168] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: basic.css [2019-12-31 16:24:20,200] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: basic.css [2019-12-31 16:24:20,399] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: doctools.js [2019-12-31 16:24:20,430] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: doctools.js [2019-12-31 16:24:20,562] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: jquery.js [2019-12-31 16:24:20,600] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: jquery.js [2019-12-31 16:24:20,784] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: pygments.css [2019-12-31 16:24:20,985] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: searchtools.js [2019-12-31 16:24:21,020] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: searchtools.js [2019-12-31 16:24:21,211] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: underscore.js [2019-12-31 16:24:21,241] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: underscore.js [2019-12-31 16:24:21,327] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: websupport.js [2019-12-31 16:24:21,363] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: websupport.js [2019-12-31 16:24:21,613] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: coverage_across_reference.txt [2019-12-31 16:24:21,651] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: coverage_across_reference.txt [2019-12-31 16:24:21,944] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: mapped_reads_nucleotide_content.txt [2019-12-31 16:24:21,978] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: mapped_reads_nucleotide_content.txt [2019-12-31 16:24:22,128] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: mapped_reads_clipping_profile.txt [2019-12-31 16:24:22,323] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: mapping_quality_across_reference.txt [2019-12-31 16:24:22,353] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: mapping_quality_across_reference.txt [2019-12-31 16:24:22,632] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: insert_size_across_reference.txt [2019-12-31 16:24:22,663] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: insert_size_across_reference.txt [2019-12-31 16:24:22,831] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: qualimapReport.html [2019-12-31 16:24:22,883] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: agogo.css [2019-12-31 16:24:22,930] multiqc [DEBUG ] File ignored by 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exceeded search pattern filesize limit: pygments.css [2019-12-31 16:24:23,913] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: searchtools.js [2019-12-31 16:24:23,964] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: searchtools.js [2019-12-31 16:24:24,158] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: underscore.js [2019-12-31 16:24:24,186] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: underscore.js [2019-12-31 16:24:24,273] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: websupport.js [2019-12-31 16:24:24,312] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: websupport.js [2019-12-31 16:24:24,560] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: coverage_across_reference.txt [2019-12-31 16:24:24,592] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: coverage_across_reference.txt [2019-12-31 16:24:24,885] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: mapped_reads_nucleotide_content.txt [2019-12-31 16:24:24,918] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: mapped_reads_nucleotide_content.txt [2019-12-31 16:24:25,078] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: mapped_reads_clipping_profile.txt [2019-12-31 16:24:25,268] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: mapping_quality_across_reference.txt [2019-12-31 16:24:25,302] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: mapping_quality_across_reference.txt [2019-12-31 16:24:25,583] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: insert_size_across_reference.txt [2019-12-31 16:24:25,615] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: insert_size_across_reference.txt [2019-12-31 16:24:25,784] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: qualimapReport.html [2019-12-31 16:24:25,837] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: agogo.css [2019-12-31 16:24:25,870] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: agogo.css [2019-12-31 16:24:26,048] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: basic.css [2019-12-31 16:24:26,079] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: basic.css [2019-12-31 16:24:26,273] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: doctools.js [2019-12-31 16:24:26,309] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: doctools.js [2019-12-31 16:24:26,448] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: jquery.js [2019-12-31 16:24:26,484] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: jquery.js [2019-12-31 16:24:26,671] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: pygments.css [2019-12-31 16:24:26,865] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: searchtools.js [2019-12-31 16:24:26,897] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: searchtools.js [2019-12-31 16:24:27,095] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: underscore.js [2019-12-31 16:24:27,126] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: underscore.js [2019-12-31 16:24:27,212] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: websupport.js [2019-12-31 16:24:27,247] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: websupport.js [2019-12-31 16:24:27,491] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: coverage_across_reference.txt [2019-12-31 16:24:27,525] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: coverage_across_reference.txt [2019-12-31 16:24:27,813] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: mapped_reads_nucleotide_content.txt [2019-12-31 16:24:27,847] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: mapped_reads_nucleotide_content.txt [2019-12-31 16:24:28,006] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: mapped_reads_clipping_profile.txt [2019-12-31 16:24:28,203] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: mapping_quality_across_reference.txt [2019-12-31 16:24:28,237] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: mapping_quality_across_reference.txt [2019-12-31 16:24:28,522] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: insert_size_across_reference.txt [2019-12-31 16:24:28,555] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: insert_size_across_reference.txt [2019-12-31 16:24:28,727] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: qualimapReport.html [2019-12-31 16:24:28,780] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: agogo.css [2019-12-31 16:24:28,811] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: agogo.css [2019-12-31 16:24:28,987] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: basic.css [2019-12-31 16:24:29,025] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: basic.css [2019-12-31 16:24:29,222] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: doctools.js [2019-12-31 16:24:29,253] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: doctools.js [2019-12-31 16:24:29,388] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: jquery.js [2019-12-31 16:24:29,424] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: jquery.js [2019-12-31 16:24:29,612] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: pygments.css [2019-12-31 16:24:29,802] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: searchtools.js [2019-12-31 16:24:29,836] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: searchtools.js [2019-12-31 16:24:30,035] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: underscore.js [2019-12-31 16:24:30,064] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: underscore.js [2019-12-31 16:24:30,151] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: websupport.js [2019-12-31 16:24:30,184] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: websupport.js [2019-12-31 16:24:30,431] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: coverage_across_reference.txt [2019-12-31 16:24:30,464] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: coverage_across_reference.txt [2019-12-31 16:24:30,753] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: mapped_reads_nucleotide_content.txt [2019-12-31 16:24:30,786] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: mapped_reads_nucleotide_content.txt [2019-12-31 16:24:30,947] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: mapped_reads_clipping_profile.txt [2019-12-31 16:24:31,144] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: mapping_quality_across_reference.txt [2019-12-31 16:24:31,176] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: mapping_quality_across_reference.txt [2019-12-31 16:24:31,483] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: insert_size_across_reference.txt [2019-12-31 16:24:31,522] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: insert_size_across_reference.txt [2019-12-31 16:24:31,696] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: qualimapReport.html [2019-12-31 16:24:31,751] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: agogo.css [2019-12-31 16:24:31,787] multiqc [DEBUG ] File ignored by 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exceeded search pattern filesize limit: pygments.css [2019-12-31 16:24:32,763] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: searchtools.js [2019-12-31 16:24:32,798] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: searchtools.js [2019-12-31 16:24:32,998] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: underscore.js [2019-12-31 16:24:33,026] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: underscore.js [2019-12-31 16:24:33,114] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: websupport.js [2019-12-31 16:24:33,151] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: websupport.js [2019-12-31 16:24:33,400] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: coverage_across_reference.txt [2019-12-31 16:24:33,440] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: coverage_across_reference.txt [2019-12-31 16:24:33,735] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: mapped_reads_nucleotide_content.txt [2019-12-31 16:24:33,766] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: mapped_reads_nucleotide_content.txt [2019-12-31 16:24:33,927] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: mapped_reads_clipping_profile.txt [2019-12-31 16:24:34,140] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: mapping_quality_across_reference.txt [2019-12-31 16:24:34,177] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: mapping_quality_across_reference.txt [2019-12-31 16:24:34,471] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: insert_size_across_reference.txt [2019-12-31 16:24:34,510] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: insert_size_across_reference.txt [2019-12-31 16:24:34,682] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: qualimapReport.html [2019-12-31 16:24:34,739] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: agogo.css [2019-12-31 16:24:34,774] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: agogo.css [2019-12-31 16:24:34,956] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: basic.css [2019-12-31 16:24:35,002] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: basic.css [2019-12-31 16:24:35,202] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: doctools.js [2019-12-31 16:24:35,238] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: doctools.js [2019-12-31 16:24:35,373] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: jquery.js [2019-12-31 16:24:35,409] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: jquery.js [2019-12-31 16:24:35,595] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: pygments.css [2019-12-31 16:24:35,807] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: searchtools.js [2019-12-31 16:24:35,849] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: searchtools.js [2019-12-31 16:24:36,059] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: underscore.js [2019-12-31 16:24:36,094] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: underscore.js [2019-12-31 16:24:36,192] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: websupport.js [2019-12-31 16:24:36,229] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: websupport.js [2019-12-31 16:24:36,497] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: coverage_across_reference.txt [2019-12-31 16:24:36,543] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: coverage_across_reference.txt [2019-12-31 16:24:36,861] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: mapped_reads_nucleotide_content.txt [2019-12-31 16:24:36,901] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: mapped_reads_nucleotide_content.txt [2019-12-31 16:24:37,060] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: mapped_reads_clipping_profile.txt [2019-12-31 16:24:37,276] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: mapping_quality_across_reference.txt [2019-12-31 16:24:37,314] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: mapping_quality_across_reference.txt [2019-12-31 16:24:37,603] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: insert_size_across_reference.txt [2019-12-31 16:24:37,638] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: insert_size_across_reference.txt [2019-12-31 16:24:37,810] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: qualimapReport.html [2019-12-31 16:24:37,864] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: agogo.css [2019-12-31 16:24:37,907] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: agogo.css [2019-12-31 16:24:38,083] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: basic.css [2019-12-31 16:24:38,118] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: basic.css [2019-12-31 16:24:38,316] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: doctools.js [2019-12-31 16:24:38,348] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: doctools.js [2019-12-31 16:24:38,481] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: jquery.js [2019-12-31 16:24:38,519] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: jquery.js [2019-12-31 16:24:38,707] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: pygments.css [2019-12-31 16:24:38,923] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: searchtools.js [2019-12-31 16:24:38,975] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: searchtools.js [2019-12-31 16:24:39,176] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: underscore.js [2019-12-31 16:24:39,213] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: underscore.js [2019-12-31 16:24:39,305] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: websupport.js [2019-12-31 16:24:39,341] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: websupport.js [2019-12-31 16:24:39,586] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: coverage_across_reference.txt [2019-12-31 16:24:39,619] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: coverage_across_reference.txt [2019-12-31 16:24:39,924] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: mapped_reads_nucleotide_content.txt [2019-12-31 16:24:39,955] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: mapped_reads_nucleotide_content.txt [2019-12-31 16:24:40,103] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: mapped_reads_clipping_profile.txt [2019-12-31 16:24:40,303] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: mapping_quality_across_reference.txt [2019-12-31 16:24:40,338] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: mapping_quality_across_reference.txt [2019-12-31 16:24:40,620] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: insert_size_across_reference.txt [2019-12-31 16:24:40,651] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: insert_size_across_reference.txt [2019-12-31 16:24:40,817] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: qualimapReport.html [2019-12-31 16:24:40,870] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: agogo.css [2019-12-31 16:24:40,900] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: agogo.css [2019-12-31 16:24:41,075] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: basic.css [2019-12-31 16:24:41,110] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: basic.css [2019-12-31 16:24:41,305] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: doctools.js [2019-12-31 16:24:41,339] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: doctools.js [2019-12-31 16:24:41,478] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: jquery.js [2019-12-31 16:24:41,522] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: jquery.js [2019-12-31 16:24:41,721] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: pygments.css [2019-12-31 16:24:41,942] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: searchtools.js [2019-12-31 16:24:41,990] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: searchtools.js [2019-12-31 16:24:42,185] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: underscore.js [2019-12-31 16:24:42,215] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: underscore.js [2019-12-31 16:24:42,304] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: websupport.js [2019-12-31 16:24:42,344] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: websupport.js [2019-12-31 16:24:42,591] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: coverage_across_reference.txt [2019-12-31 16:24:42,623] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: coverage_across_reference.txt [2019-12-31 16:24:42,928] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: mapped_reads_nucleotide_content.txt [2019-12-31 16:24:42,961] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: mapped_reads_nucleotide_content.txt [2019-12-31 16:24:43,106] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: mapped_reads_clipping_profile.txt [2019-12-31 16:24:43,322] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: mapping_quality_across_reference.txt [2019-12-31 16:24:43,359] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: mapping_quality_across_reference.txt [2019-12-31 16:24:43,641] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: insert_size_across_reference.txt [2019-12-31 16:24:43,673] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: insert_size_across_reference.txt [2019-12-31 16:24:43,844] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: qualimapReport.html [2019-12-31 16:24:43,898] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: agogo.css [2019-12-31 16:24:43,939] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: agogo.css [2019-12-31 16:24:44,110] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: basic.css [2019-12-31 16:24:44,144] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: basic.css [2019-12-31 16:24:44,337] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: doctools.js [2019-12-31 16:24:44,368] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: doctools.js [2019-12-31 16:24:44,499] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: jquery.js [2019-12-31 16:24:44,532] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: jquery.js [2019-12-31 16:24:44,715] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: pygments.css [2019-12-31 16:24:44,908] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: searchtools.js [2019-12-31 16:24:44,952] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: searchtools.js [2019-12-31 16:24:45,146] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: underscore.js [2019-12-31 16:24:45,173] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: underscore.js [2019-12-31 16:24:45,259] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: websupport.js [2019-12-31 16:24:45,293] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: websupport.js [2019-12-31 16:24:45,541] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: coverage_across_reference.txt [2019-12-31 16:24:45,573] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: coverage_across_reference.txt [2019-12-31 16:24:45,862] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: mapped_reads_nucleotide_content.txt [2019-12-31 16:24:45,895] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: mapped_reads_nucleotide_content.txt [2019-12-31 16:24:46,052] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: mapped_reads_clipping_profile.txt [2019-12-31 16:24:46,246] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: mapping_quality_across_reference.txt [2019-12-31 16:24:46,279] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: mapping_quality_across_reference.txt [2019-12-31 16:24:46,578] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: insert_size_across_reference.txt [2019-12-31 16:24:46,614] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: insert_size_across_reference.txt [2019-12-31 16:24:46,793] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: qualimapReport.html [2019-12-31 16:24:46,848] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: agogo.css [2019-12-31 16:24:46,880] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: agogo.css [2019-12-31 16:24:47,048] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: basic.css [2019-12-31 16:24:47,078] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: basic.css [2019-12-31 16:24:47,274] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: doctools.js [2019-12-31 16:24:47,301] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: doctools.js [2019-12-31 16:24:47,433] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: jquery.js [2019-12-31 16:24:47,466] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: jquery.js [2019-12-31 16:24:47,647] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: pygments.css [2019-12-31 16:24:47,852] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: searchtools.js [2019-12-31 16:24:47,886] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: searchtools.js [2019-12-31 16:24:48,079] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: underscore.js [2019-12-31 16:24:48,110] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: underscore.js [2019-12-31 16:24:48,202] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: websupport.js [2019-12-31 16:24:48,238] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: websupport.js [2019-12-31 16:24:48,488] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: coverage_across_reference.txt [2019-12-31 16:24:48,523] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: coverage_across_reference.txt [2019-12-31 16:24:48,821] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: mapped_reads_nucleotide_content.txt [2019-12-31 16:24:48,851] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: mapped_reads_nucleotide_content.txt [2019-12-31 16:24:48,996] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: mapped_reads_clipping_profile.txt [2019-12-31 16:24:49,188] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: mapping_quality_across_reference.txt [2019-12-31 16:24:49,218] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: mapping_quality_across_reference.txt [2019-12-31 16:24:49,496] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: insert_size_across_reference.txt [2019-12-31 16:24:49,527] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: insert_size_across_reference.txt [2019-12-31 16:24:49,693] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: qualimapReport.html [2019-12-31 16:24:49,751] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: agogo.css [2019-12-31 16:24:49,783] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: agogo.css [2019-12-31 16:24:49,971] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: basic.css [2019-12-31 16:24:50,003] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: basic.css [2019-12-31 16:24:50,199] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: doctools.js [2019-12-31 16:24:50,228] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: doctools.js [2019-12-31 16:24:50,361] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: jquery.js [2019-12-31 16:24:50,392] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: jquery.js [2019-12-31 16:24:50,573] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: pygments.css [2019-12-31 16:24:50,768] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: searchtools.js [2019-12-31 16:24:50,801] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: searchtools.js [2019-12-31 16:24:50,994] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: underscore.js [2019-12-31 16:24:51,021] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: underscore.js [2019-12-31 16:24:51,106] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: websupport.js [2019-12-31 16:24:51,140] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: websupport.js [2019-12-31 16:24:51,387] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: coverage_across_reference.txt [2019-12-31 16:24:51,418] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: coverage_across_reference.txt [2019-12-31 16:24:51,707] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: mapped_reads_nucleotide_content.txt [2019-12-31 16:24:51,746] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: mapped_reads_nucleotide_content.txt [2019-12-31 16:24:51,890] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: mapped_reads_clipping_profile.txt [2019-12-31 16:24:52,080] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: mapping_quality_across_reference.txt [2019-12-31 16:24:52,110] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: mapping_quality_across_reference.txt [2019-12-31 16:24:52,387] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: insert_size_across_reference.txt [2019-12-31 16:24:52,417] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: insert_size_across_reference.txt [2019-12-31 16:24:52,583] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: qualimapReport.html [2019-12-31 16:24:52,638] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: agogo.css [2019-12-31 16:24:52,668] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: agogo.css [2019-12-31 16:24:52,869] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: basic.css [2019-12-31 16:24:52,910] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: basic.css [2019-12-31 16:24:53,147] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: doctools.js [2019-12-31 16:24:53,217] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: doctools.js [2019-12-31 16:24:53,416] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: jquery.js [2019-12-31 16:24:53,453] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: jquery.js [2019-12-31 16:24:53,637] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: pygments.css [2019-12-31 16:24:53,935] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: searchtools.js [2019-12-31 16:24:53,987] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: searchtools.js [2019-12-31 16:24:54,204] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: underscore.js [2019-12-31 16:24:54,231] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: underscore.js [2019-12-31 16:24:54,316] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: websupport.js [2019-12-31 16:24:54,349] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: websupport.js [2019-12-31 16:24:54,594] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: coverage_across_reference.txt [2019-12-31 16:24:54,624] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: coverage_across_reference.txt [2019-12-31 16:24:54,915] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: mapped_reads_nucleotide_content.txt [2019-12-31 16:24:54,944] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: mapped_reads_nucleotide_content.txt [2019-12-31 16:24:55,088] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: mapped_reads_clipping_profile.txt [2019-12-31 16:24:55,292] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: mapping_quality_across_reference.txt [2019-12-31 16:24:55,326] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: mapping_quality_across_reference.txt [2019-12-31 16:24:55,612] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: insert_size_across_reference.txt [2019-12-31 16:24:55,642] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: insert_size_across_reference.txt [2019-12-31 16:24:57,399] multiqc.plots.bargraph [DEBUG ] Using matplotlib version 2.2.3 [2019-12-31 16:24:57,404] multiqc.plots.linegraph [DEBUG ] Using matplotlib version 2.2.3 [2019-12-31 16:24:57,413] multiqc [DEBUG ] No samples found: custom_content [2019-12-31 16:24:57,455] multiqc [DEBUG ] No samples found: conpair [2019-12-31 16:24:57,492] multiqc [DEBUG ] No samples found: peddy [2019-12-31 16:24:57,540] multiqc [DEBUG ] No samples found: methylQA [2019-12-31 16:24:57,583] multiqc [DEBUG ] No samples found: phantompeakqualtools [2019-12-31 16:25:01,098] multiqc.modules.qualimap.QM_BamQC [DEBUG ] Using default Qualimap thresholds: 1, 5, 10, 30, 50 [2019-12-31 16:25:02,294] multiqc.modules.qualimap.qualimap [INFO ] Found 18 BamQC reports [2019-12-31 16:25:02,338] multiqc [DEBUG ] No samples found: preseq [2019-12-31 16:25:02,375] multiqc [DEBUG ] No samples found: quast [2019-12-31 16:25:02,404] multiqc [DEBUG ] No samples found: qorts [2019-12-31 16:25:02,445] multiqc [DEBUG ] No samples found: rna_seqc [2019-12-31 16:25:02,471] multiqc [DEBUG ] No samples found: rsem [2019-12-31 16:25:02,541] multiqc [DEBUG ] No samples found: rseqc [2019-12-31 16:25:02,591] multiqc [DEBUG ] No samples found: busco [2019-12-31 16:25:02,618] multiqc [DEBUG ] No samples found: goleft_indexcov [2019-12-31 16:25:02,662] multiqc [DEBUG ] No samples found: disambiguate [2019-12-31 16:25:02,709] multiqc [DEBUG ] No samples found: supernova [2019-12-31 16:25:02,775] multiqc [DEBUG ] No samples found: deeptools [2019-12-31 16:25:02,815] multiqc [DEBUG ] No samples found: sargasso [2019-12-31 16:25:02,862] multiqc [DEBUG ] No samples found: verifybamid [2019-12-31 16:25:02,905] multiqc [DEBUG ] No samples found: mirtrace [2019-12-31 16:25:02,948] multiqc [DEBUG ] No samples found: happy [2019-12-31 16:25:03,024] multiqc [DEBUG ] No samples found: homer [2019-12-31 16:25:03,069] multiqc [DEBUG ] No samples found: macs2 [2019-12-31 16:25:03,118] multiqc [DEBUG ] No samples found: theta2 [2019-12-31 16:25:03,149] multiqc [DEBUG ] No samples found: snpeff [2019-12-31 16:25:03,203] multiqc [DEBUG ] No samples found: gatk [2019-12-31 16:25:03,231] multiqc [DEBUG ] No samples found: htseq [2019-12-31 16:25:03,260] multiqc [DEBUG ] No samples found: bcftools [2019-12-31 16:25:03,286] multiqc [DEBUG ] No samples found: featureCounts [2019-12-31 16:25:03,334] multiqc [DEBUG ] No samples found: fgbio [2019-12-31 16:25:03,376] multiqc [DEBUG ] No samples found: dedup [2019-12-31 16:25:03,413] multiqc [DEBUG ] No samples found: damageprofiler [2019-12-31 16:25:03,513] multiqc [DEBUG ] No samples found: biobambam2 [2019-12-31 16:25:03,542] multiqc [DEBUG ] No samples found: mtnucratio [2019-12-31 16:25:03,555] multiqc.modules.picard.GcBiasMetrics [DEBUG ] Duplicate sample name found in tmp.sorted.dupmarked.bam.gc.summary.txt! Overwriting: tmp [2019-12-31 16:25:03,559] multiqc.modules.picard.GcBiasMetrics [DEBUG ] Duplicate sample name found in POG1047_N_1_lane.bam.gc.summary.txt! Overwriting: POG1047_N_1_lane [2019-12-31 16:25:03,564] multiqc.modules.picard.GcBiasMetrics [DEBUG ] Duplicate sample name found in POG1047_T_1_lane2.bam.gc.summary.txt! Overwriting: POG1047_T_1_lane2 [2019-12-31 16:25:03,568] multiqc.modules.picard.GcBiasMetrics [DEBUG ] Duplicate sample name found in POG1047_T_1_lane4.bam.gc.summary.txt! Overwriting: POG1047_T_1_lane4 [2019-12-31 16:25:03,573] multiqc.modules.picard.GcBiasMetrics [DEBUG ] Duplicate sample name found in POG1047_T_1_lane3.bam.gc.summary.txt! Overwriting: POG1047_T_1_lane3 [2019-12-31 16:25:03,577] multiqc.modules.picard.GcBiasMetrics [DEBUG ] Duplicate sample name found in POG1047_N_illumina.bam.gc.summary.txt! Overwriting: POG1047_N_illumina [2019-12-31 16:25:03,582] multiqc.modules.picard.GcBiasMetrics [DEBUG ] Duplicate sample name found in K003446-K003447-K003448-K003449_4_lanes_dupsFlagged.bam.gc.summary.txt! Overwriting: K003446-K003447-K003448-K003449_4_lanes_dupsFlagged [2019-12-31 16:25:03,587] multiqc.modules.picard.GcBiasMetrics [DEBUG ] Duplicate sample name found in K003450-K003451-K003452-K003453_4_lanes_dupsFlagged.bam.gc.summary.txt! Overwriting: K003450-K003451-K003452-K003453_4_lanes_dupsFlagged [2019-12-31 16:25:03,593] multiqc.modules.picard.GcBiasMetrics [DEBUG ] Duplicate sample name found in K003454-K003455-K003456-K003457_4_lanes_dupsFlagged.bam.gc.summary.txt! Overwriting: K003454-K003455-K003456-K003457_4_lanes_dupsFlagged [2019-12-31 16:25:03,598] multiqc.modules.picard.GcBiasMetrics [DEBUG ] Duplicate sample name found in sBC_pBC_NA24143_round1.bam.gc.summary.txt! Overwriting: sBC_pBC_NA24143_round1 [2019-12-31 16:25:03,603] multiqc.modules.picard.GcBiasMetrics [DEBUG ] Duplicate sample name found in sBC_pBC_NA24143_round2.bam.gc.summary.txt! Overwriting: sBC_pBC_NA24143_round2 [2019-12-31 16:25:03,609] multiqc.modules.picard.GcBiasMetrics [DEBUG ] Duplicate sample name found in sBC_pBC_NA24143_round3.bam.gc.summary.txt! Overwriting: sBC_pBC_NA24143_round3 [2019-12-31 16:25:03,614] multiqc.modules.picard.GcBiasMetrics [DEBUG ] Duplicate sample name found in sBC_pBC_NA24149_round1.bam.gc.summary.txt! Overwriting: sBC_pBC_NA24149_round1 [2019-12-31 16:25:03,619] multiqc.modules.picard.GcBiasMetrics [DEBUG ] Duplicate sample name found in sBC_pBC_NA24149_round2.bam.gc.summary.txt! Overwriting: sBC_pBC_NA24149_round2 [2019-12-31 16:25:03,623] multiqc.modules.picard.GcBiasMetrics [DEBUG ] Duplicate sample name found in sBC_pBC_NA24149_round3.bam.gc.summary.txt! Overwriting: sBC_pBC_NA24149_round3 [2019-12-31 16:25:03,629] multiqc.modules.picard.GcBiasMetrics [DEBUG ] Duplicate sample name found in sBC_pBC_NA24385_round1.bam.gc.summary.txt! Overwriting: sBC_pBC_NA24385_round1 [2019-12-31 16:25:03,634] multiqc.modules.picard.GcBiasMetrics [DEBUG ] Duplicate sample name found in sBC_pBC_NA24385_round2.bam.gc.summary.txt! Overwriting: sBC_pBC_NA24385_round2 [2019-12-31 16:25:03,639] multiqc.modules.picard.GcBiasMetrics [DEBUG ] Duplicate sample name found in sBC_pBC_NA24385_round3.bam.gc.summary.txt! Overwriting: sBC_pBC_NA24385_round3 [2019-12-31 16:25:03,659] multiqc.modules.picard.picard [INFO ] Found 18 GcBiasMetrics reports [2019-12-31 16:25:03,691] multiqc [DEBUG ] No samples found: prokka [2019-12-31 16:25:03,720] multiqc [DEBUG ] No samples found: samblaster [2019-12-31 16:25:04,009] multiqc.modules.samtools.samtools [INFO ] Found 18 stats reports [2019-12-31 16:25:04,039] multiqc [DEBUG ] No samples found: sexdeterrmine [2019-12-31 16:25:04,068] multiqc [DEBUG ] No samples found: bamtools [2019-12-31 16:25:04,111] multiqc [DEBUG ] No samples found: jellyfish [2019-12-31 16:25:04,167] multiqc [DEBUG ] No samples found: vcftools [2019-12-31 16:25:04,197] multiqc [DEBUG ] No samples found: longranger [2019-12-31 16:25:04,234] multiqc [DEBUG ] No samples found: stacks [2019-12-31 16:25:04,308] multiqc [DEBUG ] No samples found: bbmap [2019-12-31 16:25:04,353] multiqc [DEBUG ] No samples found: bismark [2019-12-31 16:25:04,389] multiqc [DEBUG ] No samples found: biscuit [2019-12-31 16:25:04,413] multiqc [DEBUG ] No samples found: hicexplorer [2019-12-31 16:25:04,446] multiqc [DEBUG ] No samples found: hicup [2019-12-31 16:25:04,472] multiqc [DEBUG ] No samples found: hicpro [2019-12-31 16:25:04,517] multiqc [DEBUG ] No samples found: salmon [2019-12-31 16:25:04,548] multiqc [DEBUG ] No samples found: kallisto [2019-12-31 16:25:04,575] multiqc [DEBUG ] No samples found: slamdunk [2019-12-31 16:25:04,604] multiqc [DEBUG ] No samples found: star [2019-12-31 16:25:04,643] multiqc [DEBUG ] No samples found: hisat2 [2019-12-31 16:25:04,671] multiqc [DEBUG ] No samples found: tophat [2019-12-31 16:25:04,712] multiqc [DEBUG ] No samples found: bowtie2 [2019-12-31 16:25:04,743] multiqc [DEBUG ] No samples found: bowtie1 [2019-12-31 16:25:04,785] multiqc [DEBUG ] No samples found: kat [2019-12-31 16:25:04,809] multiqc [DEBUG ] No samples found: leehom [2019-12-31 16:25:04,856] multiqc [DEBUG ] No samples found: adapterRemoval [2019-12-31 16:25:04,897] multiqc [DEBUG ] No samples found: clipandmerge [2019-12-31 16:25:04,922] multiqc [DEBUG ] No samples found: cutadapt [2019-12-31 16:25:04,953] multiqc [DEBUG ] No samples found: flexbar [2019-12-31 16:25:04,997] multiqc [DEBUG ] No samples found: trimmomatic [2019-12-31 16:25:05,025] multiqc [DEBUG ] No samples found: skewer [2019-12-31 16:25:05,057] multiqc [DEBUG ] No samples found: sortmerna [2019-12-31 16:25:05,092] multiqc [DEBUG ] No samples found: biobloomtools [2019-12-31 16:25:05,130] multiqc [DEBUG ] No samples found: fastq_screen [2019-12-31 16:25:05,176] multiqc [DEBUG ] No samples found: afterqc [2019-12-31 16:25:05,202] multiqc [DEBUG ] No samples found: fastp [2019-12-31 16:25:05,248] multiqc [DEBUG ] No samples found: fastqc [2019-12-31 16:25:05,278] multiqc [DEBUG ] No samples found: minionqc [2019-12-31 16:25:05,310] multiqc [DEBUG ] No samples found: mosdepth [2019-12-31 16:25:05,341] multiqc [DEBUG ] No samples found: clusterflow [2019-12-31 16:25:05,372] multiqc [DEBUG ] No samples found: bcl2fastq [2019-12-31 16:25:05,396] multiqc [DEBUG ] No samples found: interop [2019-12-31 16:25:05,424] multiqc [DEBUG ] No samples found: flash [2019-12-31 16:25:05,462] multiqc [DEBUG ] No samples found: seqyclean [2019-12-31 16:25:05,655] multiqc [INFO ] Compressing plot data [2019-12-31 16:25:09,240] multiqc [WARNING] Deleting : multiqc_report.html (-f was specified) [2019-12-31 16:25:09,243] multiqc [WARNING] Deleting : multiqc_data (-f was specified) [2019-12-31 16:25:09,291] multiqc [INFO ] Report : multiqc_report.html [2019-12-31 16:25:09,291] multiqc [INFO ] Data : multiqc_data [2019-12-31 16:25:09,294] multiqc [DEBUG ] Moving data file from '/projects/bioSCRATCH/rcorbett/tmpJGMQOZ/multiqc_data/multiqc_qualimap_bamqc_genome_results.txt' to '/projects/rcorbettprj2/TechD/MGI/multiqc_data' [2019-12-31 16:25:09,305] multiqc [DEBUG ] Moving data file from '/projects/bioSCRATCH/rcorbett/tmpJGMQOZ/multiqc_data/multiqc_picard_gcbias.txt' to '/projects/rcorbettprj2/TechD/MGI/multiqc_data' [2019-12-31 16:25:09,314] multiqc [DEBUG ] Moving data file from '/projects/bioSCRATCH/rcorbett/tmpJGMQOZ/multiqc_data/multiqc_samtools_stats.txt' to '/projects/rcorbettprj2/TechD/MGI/multiqc_data' [2019-12-31 16:25:09,325] multiqc [DEBUG ] Moving data file from '/projects/bioSCRATCH/rcorbett/tmpJGMQOZ/multiqc_data/multiqc_general_stats.txt' to '/projects/rcorbettprj2/TechD/MGI/multiqc_data' [2019-12-31 16:25:09,334] multiqc [DEBUG ] Moving data file from '/projects/bioSCRATCH/rcorbett/tmpJGMQOZ/multiqc_data/multiqc_sources.txt' to '/projects/rcorbettprj2/TechD/MGI/multiqc_data' [2019-12-31 16:25:09,343] multiqc [DEBUG ] Moving data file from '/projects/bioSCRATCH/rcorbett/tmpJGMQOZ/multiqc_data/multiqc_data.json' to '/projects/rcorbettprj2/TechD/MGI/multiqc_data' [2019-12-31 16:25:10,286] multiqc [INFO ] MultiQC complete