Module	Section	Sample Name	Source
Picard	GcBiasDetailMetrics	SI-GA-D3	/projects/rcorbettprj2/TechD/10x_vs_inhouse/bams/10X/bulk/SI-GA-D3.bam.gcmets.txt
Picard	GcBiasDetailMetrics	SI-GA-E3	/projects/rcorbettprj2/TechD/10x_vs_inhouse/bams/10X/bulk/SI-GA-E3.bam.gcmets.txt
Picard	GcBiasDetailMetrics	SI-GA-D4	/projects/rcorbettprj2/TechD/10x_vs_inhouse/bams/10X/bulk/SI-GA-D4.bam.gcmets.txt
Picard	GcBiasDetailMetrics	SI-GA-E4	/projects/rcorbettprj2/TechD/10x_vs_inhouse/bams/10X/bulk/SI-GA-E4.bam.gcmets.txt
Picard	GcBiasDetailMetrics	SI-GA-F4	/projects/rcorbettprj2/TechD/10x_vs_inhouse/bams/10X/bulk/SI-GA-F4.bam.gcmets.txt
Picard	GcBiasDetailMetrics	SI-GA-A3	/projects/rcorbettprj2/TechD/10x_vs_inhouse/bams/10X/bulk/SI-GA-A3.bam.gcmets.txt
Picard	GcBiasDetailMetrics	SI-GA-G4	/projects/rcorbettprj2/TechD/10x_vs_inhouse/bams/10X/bulk/SI-GA-G4.bam.gcmets.txt
Picard	GcBiasDetailMetrics	SI-GA-G3	/projects/rcorbettprj2/TechD/10x_vs_inhouse/bams/10X/bulk/SI-GA-G3.bam.gcmets.txt
Picard	GcBiasDetailMetrics	SI-GA-A4	/projects/rcorbettprj2/TechD/10x_vs_inhouse/bams/10X/bulk/SI-GA-A4.bam.gcmets.txt
Picard	GcBiasDetailMetrics	SI-GA-F3	/projects/rcorbettprj2/TechD/10x_vs_inhouse/bams/10X/bulk/SI-GA-F3.bam.gcmets.txt
Picard	GcBiasDetailMetrics	SI-GA-C3	/projects/rcorbettprj2/TechD/10x_vs_inhouse/bams/10X/bulk/SI-GA-C3.bam.gcmets.txt
Picard	GcBiasDetailMetrics	SI-GA-H3	/projects/rcorbettprj2/TechD/10x_vs_inhouse/bams/10X/bulk/SI-GA-H3.bam.gcmets.txt
Picard	GcBiasDetailMetrics	SI-GA-B3	/projects/rcorbettprj2/TechD/10x_vs_inhouse/bams/10X/bulk/SI-GA-B3.bam.gcmets.txt
Picard	GcBiasDetailMetrics	SI-GA-B4	/projects/rcorbettprj2/TechD/10x_vs_inhouse/bams/10X/bulk/SI-GA-B4.bam.gcmets.txt
Picard	GcBiasDetailMetrics	merged_DeadCell	/projects/rcorbettprj2/TechD/10x_vs_inhouse/bams/inhouse/bulk/merged_DeadCell.bam.gcmets.txt
Picard	GcBiasDetailMetrics	SI-GA-C4	/projects/rcorbettprj2/TechD/10x_vs_inhouse/bams/10X/bulk/SI-GA-C4.bam.gcmets.txt
Picard	GcBiasDetailMetrics	merged_DeadCell_1	/projects/rcorbettprj2/TechD/10x_vs_inhouse/bams/inhouse/bulk/merged_DeadCell_1.bam.gcmets.txt
Picard	GcBiasDetailMetrics	SI-GA-H4	/projects/rcorbettprj2/TechD/10x_vs_inhouse/bams/10X/bulk/SI-GA-H4.bam.gcmets.txt
Picard	GcBiasDetailMetrics	merged_DeadCell_2_2	/projects/rcorbettprj2/TechD/10x_vs_inhouse/bams/inhouse/bulk/merged_DeadCell_2_2.bam.gcmets.txt
Picard	GcBiasDetailMetrics	merged_DeadCell_2	/projects/rcorbettprj2/TechD/10x_vs_inhouse/bams/inhouse/bulk/merged_DeadCell_2.bam.gcmets.txt
Picard	GcBiasSummaryMetrics	SI-GA-D3	/projects/rcorbettprj2/TechD/10x_vs_inhouse/bams/10X/bulk/SI-GA-D3.bam.gc.summary.txt
Picard	GcBiasSummaryMetrics	SI-GA-E3	/projects/rcorbettprj2/TechD/10x_vs_inhouse/bams/10X/bulk/SI-GA-E3.bam.gc.summary.txt
Picard	GcBiasSummaryMetrics	SI-GA-D4	/projects/rcorbettprj2/TechD/10x_vs_inhouse/bams/10X/bulk/SI-GA-D4.bam.gc.summary.txt
Picard	GcBiasSummaryMetrics	SI-GA-E4	/projects/rcorbettprj2/TechD/10x_vs_inhouse/bams/10X/bulk/SI-GA-E4.bam.gc.summary.txt
Picard	GcBiasSummaryMetrics	SI-GA-F4	/projects/rcorbettprj2/TechD/10x_vs_inhouse/bams/10X/bulk/SI-GA-F4.bam.gc.summary.txt
Picard	GcBiasSummaryMetrics	SI-GA-A3	/projects/rcorbettprj2/TechD/10x_vs_inhouse/bams/10X/bulk/SI-GA-A3.bam.gc.summary.txt
Picard	GcBiasSummaryMetrics	SI-GA-G4	/projects/rcorbettprj2/TechD/10x_vs_inhouse/bams/10X/bulk/SI-GA-G4.bam.gc.summary.txt
Picard	GcBiasSummaryMetrics	SI-GA-G3	/projects/rcorbettprj2/TechD/10x_vs_inhouse/bams/10X/bulk/SI-GA-G3.bam.gc.summary.txt
Picard	GcBiasSummaryMetrics	SI-GA-A4	/projects/rcorbettprj2/TechD/10x_vs_inhouse/bams/10X/bulk/SI-GA-A4.bam.gc.summary.txt
Picard	GcBiasSummaryMetrics	SI-GA-F3	/projects/rcorbettprj2/TechD/10x_vs_inhouse/bams/10X/bulk/SI-GA-F3.bam.gc.summary.txt
Picard	GcBiasSummaryMetrics	SI-GA-C3	/projects/rcorbettprj2/TechD/10x_vs_inhouse/bams/10X/bulk/SI-GA-C3.bam.gc.summary.txt
Picard	GcBiasSummaryMetrics	SI-GA-H3	/projects/rcorbettprj2/TechD/10x_vs_inhouse/bams/10X/bulk/SI-GA-H3.bam.gc.summary.txt
Picard	GcBiasSummaryMetrics	SI-GA-B3	/projects/rcorbettprj2/TechD/10x_vs_inhouse/bams/10X/bulk/SI-GA-B3.bam.gc.summary.txt
Picard	GcBiasSummaryMetrics	SI-GA-B4	/projects/rcorbettprj2/TechD/10x_vs_inhouse/bams/10X/bulk/SI-GA-B4.bam.gc.summary.txt
Picard	GcBiasSummaryMetrics	merged_DeadCell	/projects/rcorbettprj2/TechD/10x_vs_inhouse/bams/inhouse/bulk/merged_DeadCell.bam.gc.summary.txt
Picard	GcBiasSummaryMetrics	SI-GA-C4	/projects/rcorbettprj2/TechD/10x_vs_inhouse/bams/10X/bulk/SI-GA-C4.bam.gc.summary.txt
Picard	GcBiasSummaryMetrics	merged_DeadCell_1	/projects/rcorbettprj2/TechD/10x_vs_inhouse/bams/inhouse/bulk/merged_DeadCell_1.bam.gc.summary.txt
Picard	GcBiasSummaryMetrics	SI-GA-H4	/projects/rcorbettprj2/TechD/10x_vs_inhouse/bams/10X/bulk/SI-GA-H4.bam.gc.summary.txt
Picard	GcBiasSummaryMetrics	merged_DeadCell_2_2	/projects/rcorbettprj2/TechD/10x_vs_inhouse/bams/inhouse/bulk/merged_DeadCell_2_2.bam.gc.summary.txt
Picard	GcBiasSummaryMetrics	merged_DeadCell_2	/projects/rcorbettprj2/TechD/10x_vs_inhouse/bams/inhouse/bulk/merged_DeadCell_2.bam.gc.summary.txt
Samtools	flagstat	merged_DeadCell_1	/projects/rcorbettprj2/TechD/10x_vs_inhouse/bams/inhouse/bulk/merged_DeadCell_1.bam.flagstat
Samtools	flagstat	merged_DeadCell	/projects/rcorbettprj2/TechD/10x_vs_inhouse/bams/inhouse/bulk/merged_DeadCell.bam.flagstat
Samtools	flagstat	merged_DeadCell_2_2	/projects/rcorbettprj2/TechD/10x_vs_inhouse/bams/inhouse/bulk/merged_DeadCell_2_2.bam.flagstat
Samtools	flagstat	merged_DeadCell_2	/projects/rcorbettprj2/TechD/10x_vs_inhouse/bams/inhouse/bulk/merged_DeadCell_2.bam.flagstat
Samtools	stats	SI-GA-D3	/projects/rcorbettprj2/TechD/10x_vs_inhouse/bams/10X/bulk/SI-GA-D3.bam.stats
Samtools	stats	SI-GA-E3	/projects/rcorbettprj2/TechD/10x_vs_inhouse/bams/10X/bulk/SI-GA-E3.bam.stats
Samtools	stats	SI-GA-D4	/projects/rcorbettprj2/TechD/10x_vs_inhouse/bams/10X/bulk/SI-GA-D4.bam.stats
Samtools	stats	SI-GA-E4	/projects/rcorbettprj2/TechD/10x_vs_inhouse/bams/10X/bulk/SI-GA-E4.bam.stats
Samtools	stats	SI-GA-F4	/projects/rcorbettprj2/TechD/10x_vs_inhouse/bams/10X/bulk/SI-GA-F4.bam.stats
Samtools	stats	SI-GA-A3	/projects/rcorbettprj2/TechD/10x_vs_inhouse/bams/10X/bulk/SI-GA-A3.bam.stats
Samtools	stats	SI-GA-G4	/projects/rcorbettprj2/TechD/10x_vs_inhouse/bams/10X/bulk/SI-GA-G4.bam.stats
Samtools	stats	SI-GA-G3	/projects/rcorbettprj2/TechD/10x_vs_inhouse/bams/10X/bulk/SI-GA-G3.bam.stats
Samtools	stats	SI-GA-A4	/projects/rcorbettprj2/TechD/10x_vs_inhouse/bams/10X/bulk/SI-GA-A4.bam.stats
Samtools	stats	SI-GA-F3	/projects/rcorbettprj2/TechD/10x_vs_inhouse/bams/10X/bulk/SI-GA-F3.bam.stats
Samtools	stats	SI-GA-C3	/projects/rcorbettprj2/TechD/10x_vs_inhouse/bams/10X/bulk/SI-GA-C3.bam.stats
Samtools	stats	SI-GA-H3	/projects/rcorbettprj2/TechD/10x_vs_inhouse/bams/10X/bulk/SI-GA-H3.bam.stats
Samtools	stats	SI-GA-B3	/projects/rcorbettprj2/TechD/10x_vs_inhouse/bams/10X/bulk/SI-GA-B3.bam.stats
Samtools	stats	SI-GA-B4	/projects/rcorbettprj2/TechD/10x_vs_inhouse/bams/10X/bulk/SI-GA-B4.bam.stats
Samtools	stats	merged_DeadCell	/projects/rcorbettprj2/TechD/10x_vs_inhouse/bams/inhouse/bulk/merged_DeadCell.bam.stats
Samtools	stats	SI-GA-C4	/projects/rcorbettprj2/TechD/10x_vs_inhouse/bams/10X/bulk/SI-GA-C4.bam.stats
Samtools	stats	merged_DeadCell_1	/projects/rcorbettprj2/TechD/10x_vs_inhouse/bams/inhouse/bulk/merged_DeadCell_1.bam.stats
Samtools	stats	SI-GA-H4	/projects/rcorbettprj2/TechD/10x_vs_inhouse/bams/10X/bulk/SI-GA-H4.bam.stats
Samtools	stats	merged_DeadCell_2_2	/projects/rcorbettprj2/TechD/10x_vs_inhouse/bams/inhouse/bulk/merged_DeadCell_2_2.bam.stats
Samtools	stats	merged_DeadCell_2	/projects/rcorbettprj2/TechD/10x_vs_inhouse/bams/inhouse/bulk/merged_DeadCell_2.bam.stats
QualiMap	mapped_gc_distribution	SI-GA-D3	/projects/rcorbettprj2/TechD/10x_vs_inhouse/bams/10X/bulk/SI-GA-D3/raw_data_qualimapReport/mapped_reads_gc-content_distribution.txt
QualiMap	mapped_gc_distribution	SI-GA-E3	/projects/rcorbettprj2/TechD/10x_vs_inhouse/bams/10X/bulk/SI-GA-E3/raw_data_qualimapReport/mapped_reads_gc-content_distribution.txt
QualiMap	mapped_gc_distribution	SI-GA-D4	/projects/rcorbettprj2/TechD/10x_vs_inhouse/bams/10X/bulk/SI-GA-D4/raw_data_qualimapReport/mapped_reads_gc-content_distribution.txt
QualiMap	mapped_gc_distribution	SI-GA-E4	/projects/rcorbettprj2/TechD/10x_vs_inhouse/bams/10X/bulk/SI-GA-E4/raw_data_qualimapReport/mapped_reads_gc-content_distribution.txt
QualiMap	mapped_gc_distribution	SI-GA-F4	/projects/rcorbettprj2/TechD/10x_vs_inhouse/bams/10X/bulk/SI-GA-F4/raw_data_qualimapReport/mapped_reads_gc-content_distribution.txt
QualiMap	mapped_gc_distribution	SI-GA-H4	/projects/rcorbettprj2/TechD/10x_vs_inhouse/bams/10X/bulk/SI-GA-H4/raw_data_qualimapReport/mapped_reads_gc-content_distribution.txt
QualiMap	mapped_gc_distribution	SI-GA-G4	/projects/rcorbettprj2/TechD/10x_vs_inhouse/bams/10X/bulk/SI-GA-G4/raw_data_qualimapReport/mapped_reads_gc-content_distribution.txt
QualiMap	mapped_gc_distribution	SI-GA-G3	/projects/rcorbettprj2/TechD/10x_vs_inhouse/bams/10X/bulk/SI-GA-G3/raw_data_qualimapReport/mapped_reads_gc-content_distribution.txt
QualiMap	mapped_gc_distribution	SI-GA-A4	/projects/rcorbettprj2/TechD/10x_vs_inhouse/bams/10X/bulk/SI-GA-A4/raw_data_qualimapReport/mapped_reads_gc-content_distribution.txt
QualiMap	mapped_gc_distribution	SI-GA-F3	/projects/rcorbettprj2/TechD/10x_vs_inhouse/bams/10X/bulk/SI-GA-F3/raw_data_qualimapReport/mapped_reads_gc-content_distribution.txt
QualiMap	mapped_gc_distribution	SI-GA-C3	/projects/rcorbettprj2/TechD/10x_vs_inhouse/bams/10X/bulk/SI-GA-C3/raw_data_qualimapReport/mapped_reads_gc-content_distribution.txt
QualiMap	mapped_gc_distribution	SI-GA-H3	/projects/rcorbettprj2/TechD/10x_vs_inhouse/bams/10X/bulk/SI-GA-H3/raw_data_qualimapReport/mapped_reads_gc-content_distribution.txt
QualiMap	mapped_gc_distribution	SI-GA-B3	/projects/rcorbettprj2/TechD/10x_vs_inhouse/bams/10X/bulk/SI-GA-B3/raw_data_qualimapReport/mapped_reads_gc-content_distribution.txt
QualiMap	mapped_gc_distribution	SI-GA-B4	/projects/rcorbettprj2/TechD/10x_vs_inhouse/bams/10X/bulk/SI-GA-B4/raw_data_qualimapReport/mapped_reads_gc-content_distribution.txt
QualiMap	mapped_gc_distribution	merged_DeadCell	/projects/rcorbettprj2/TechD/10x_vs_inhouse/bams/inhouse/bulk/merged_DeadCell/raw_data_qualimapReport/mapped_reads_gc-content_distribution.txt
QualiMap	mapped_gc_distribution	SI-GA-C4	/projects/rcorbettprj2/TechD/10x_vs_inhouse/bams/10X/bulk/SI-GA-C4/raw_data_qualimapReport/mapped_reads_gc-content_distribution.txt
QualiMap	mapped_gc_distribution	merged_DeadCell_1	/projects/rcorbettprj2/TechD/10x_vs_inhouse/bams/inhouse/bulk/merged_DeadCell_1/raw_data_qualimapReport/mapped_reads_gc-content_distribution.txt
QualiMap	mapped_gc_distribution	SI-GA-A3	/projects/rcorbettprj2/TechD/10x_vs_inhouse/bams/10X/bulk/SI-GA-A3/raw_data_qualimapReport/mapped_reads_gc-content_distribution.txt
QualiMap	mapped_gc_distribution	merged_DeadCell_2_2	/projects/rcorbettprj2/TechD/10x_vs_inhouse/bams/inhouse/bulk/merged_DeadCell_2_2/raw_data_qualimapReport/mapped_reads_gc-content_distribution.txt
QualiMap	mapped_gc_distribution	merged_DeadCell_2	/projects/rcorbettprj2/TechD/10x_vs_inhouse/bams/inhouse/bulk/merged_DeadCell_2/raw_data_qualimapReport/mapped_reads_gc-content_distribution.txt
QualiMap	insert_size_histogram	SI-GA-D3	/projects/rcorbettprj2/TechD/10x_vs_inhouse/bams/10X/bulk/SI-GA-D3/raw_data_qualimapReport/insert_size_histogram.txt
QualiMap	insert_size_histogram	SI-GA-E3	/projects/rcorbettprj2/TechD/10x_vs_inhouse/bams/10X/bulk/SI-GA-E3/raw_data_qualimapReport/insert_size_histogram.txt
QualiMap	insert_size_histogram	SI-GA-D4	/projects/rcorbettprj2/TechD/10x_vs_inhouse/bams/10X/bulk/SI-GA-D4/raw_data_qualimapReport/insert_size_histogram.txt
QualiMap	insert_size_histogram	SI-GA-E4	/projects/rcorbettprj2/TechD/10x_vs_inhouse/bams/10X/bulk/SI-GA-E4/raw_data_qualimapReport/insert_size_histogram.txt
QualiMap	insert_size_histogram	SI-GA-F4	/projects/rcorbettprj2/TechD/10x_vs_inhouse/bams/10X/bulk/SI-GA-F4/raw_data_qualimapReport/insert_size_histogram.txt
QualiMap	insert_size_histogram	SI-GA-H4	/projects/rcorbettprj2/TechD/10x_vs_inhouse/bams/10X/bulk/SI-GA-H4/raw_data_qualimapReport/insert_size_histogram.txt
QualiMap	insert_size_histogram	SI-GA-G4	/projects/rcorbettprj2/TechD/10x_vs_inhouse/bams/10X/bulk/SI-GA-G4/raw_data_qualimapReport/insert_size_histogram.txt
QualiMap	insert_size_histogram	SI-GA-G3	/projects/rcorbettprj2/TechD/10x_vs_inhouse/bams/10X/bulk/SI-GA-G3/raw_data_qualimapReport/insert_size_histogram.txt
QualiMap	insert_size_histogram	SI-GA-A4	/projects/rcorbettprj2/TechD/10x_vs_inhouse/bams/10X/bulk/SI-GA-A4/raw_data_qualimapReport/insert_size_histogram.txt
QualiMap	insert_size_histogram	SI-GA-F3	/projects/rcorbettprj2/TechD/10x_vs_inhouse/bams/10X/bulk/SI-GA-F3/raw_data_qualimapReport/insert_size_histogram.txt
QualiMap	insert_size_histogram	SI-GA-C3	/projects/rcorbettprj2/TechD/10x_vs_inhouse/bams/10X/bulk/SI-GA-C3/raw_data_qualimapReport/insert_size_histogram.txt
QualiMap	insert_size_histogram	SI-GA-H3	/projects/rcorbettprj2/TechD/10x_vs_inhouse/bams/10X/bulk/SI-GA-H3/raw_data_qualimapReport/insert_size_histogram.txt
QualiMap	insert_size_histogram	SI-GA-B3	/projects/rcorbettprj2/TechD/10x_vs_inhouse/bams/10X/bulk/SI-GA-B3/raw_data_qualimapReport/insert_size_histogram.txt
QualiMap	insert_size_histogram	SI-GA-B4	/projects/rcorbettprj2/TechD/10x_vs_inhouse/bams/10X/bulk/SI-GA-B4/raw_data_qualimapReport/insert_size_histogram.txt
QualiMap	insert_size_histogram	merged_DeadCell	/projects/rcorbettprj2/TechD/10x_vs_inhouse/bams/inhouse/bulk/merged_DeadCell/raw_data_qualimapReport/insert_size_histogram.txt
QualiMap	insert_size_histogram	SI-GA-C4	/projects/rcorbettprj2/TechD/10x_vs_inhouse/bams/10X/bulk/SI-GA-C4/raw_data_qualimapReport/insert_size_histogram.txt
QualiMap	insert_size_histogram	merged_DeadCell_1	/projects/rcorbettprj2/TechD/10x_vs_inhouse/bams/inhouse/bulk/merged_DeadCell_1/raw_data_qualimapReport/insert_size_histogram.txt
QualiMap	insert_size_histogram	SI-GA-A3	/projects/rcorbettprj2/TechD/10x_vs_inhouse/bams/10X/bulk/SI-GA-A3/raw_data_qualimapReport/insert_size_histogram.txt
QualiMap	insert_size_histogram	merged_DeadCell_2_2	/projects/rcorbettprj2/TechD/10x_vs_inhouse/bams/inhouse/bulk/merged_DeadCell_2_2/raw_data_qualimapReport/insert_size_histogram.txt
QualiMap	insert_size_histogram	merged_DeadCell_2	/projects/rcorbettprj2/TechD/10x_vs_inhouse/bams/inhouse/bulk/merged_DeadCell_2/raw_data_qualimapReport/insert_size_histogram.txt
QualiMap	genome_results	SI-GA-D3	/projects/rcorbettprj2/TechD/10x_vs_inhouse/bams/10X/bulk/SI-GA-D3/genome_results.txt
QualiMap	genome_results	SI-GA-E3	/projects/rcorbettprj2/TechD/10x_vs_inhouse/bams/10X/bulk/SI-GA-E3/genome_results.txt
QualiMap	genome_results	SI-GA-D4	/projects/rcorbettprj2/TechD/10x_vs_inhouse/bams/10X/bulk/SI-GA-D4/genome_results.txt
QualiMap	genome_results	SI-GA-E4	/projects/rcorbettprj2/TechD/10x_vs_inhouse/bams/10X/bulk/SI-GA-E4/genome_results.txt
QualiMap	genome_results	SI-GA-F4	/projects/rcorbettprj2/TechD/10x_vs_inhouse/bams/10X/bulk/SI-GA-F4/genome_results.txt
QualiMap	genome_results	SI-GA-H4	/projects/rcorbettprj2/TechD/10x_vs_inhouse/bams/10X/bulk/SI-GA-H4/genome_results.txt
QualiMap	genome_results	SI-GA-G4	/projects/rcorbettprj2/TechD/10x_vs_inhouse/bams/10X/bulk/SI-GA-G4/genome_results.txt
QualiMap	genome_results	SI-GA-G3	/projects/rcorbettprj2/TechD/10x_vs_inhouse/bams/10X/bulk/SI-GA-G3/genome_results.txt
QualiMap	genome_results	SI-GA-A4	/projects/rcorbettprj2/TechD/10x_vs_inhouse/bams/10X/bulk/SI-GA-A4/genome_results.txt
QualiMap	genome_results	SI-GA-F3	/projects/rcorbettprj2/TechD/10x_vs_inhouse/bams/10X/bulk/SI-GA-F3/genome_results.txt
QualiMap	genome_results	SI-GA-C3	/projects/rcorbettprj2/TechD/10x_vs_inhouse/bams/10X/bulk/SI-GA-C3/genome_results.txt
QualiMap	genome_results	SI-GA-H3	/projects/rcorbettprj2/TechD/10x_vs_inhouse/bams/10X/bulk/SI-GA-H3/genome_results.txt
QualiMap	genome_results	SI-GA-B3	/projects/rcorbettprj2/TechD/10x_vs_inhouse/bams/10X/bulk/SI-GA-B3/genome_results.txt
QualiMap	genome_results	SI-GA-B4	/projects/rcorbettprj2/TechD/10x_vs_inhouse/bams/10X/bulk/SI-GA-B4/genome_results.txt
QualiMap	genome_results	merged_DeadCell	/projects/rcorbettprj2/TechD/10x_vs_inhouse/bams/inhouse/bulk/merged_DeadCell/genome_results.txt
QualiMap	genome_results	SI-GA-C4	/projects/rcorbettprj2/TechD/10x_vs_inhouse/bams/10X/bulk/SI-GA-C4/genome_results.txt
QualiMap	genome_results	merged_DeadCell_1	/projects/rcorbettprj2/TechD/10x_vs_inhouse/bams/inhouse/bulk/merged_DeadCell_1/genome_results.txt
QualiMap	genome_results	SI-GA-A3	/projects/rcorbettprj2/TechD/10x_vs_inhouse/bams/10X/bulk/SI-GA-A3/genome_results.txt
QualiMap	genome_results	merged_DeadCell_2_2	/projects/rcorbettprj2/TechD/10x_vs_inhouse/bams/inhouse/bulk/merged_DeadCell_2_2/genome_results.txt
QualiMap	genome_results	merged_DeadCell_2	/projects/rcorbettprj2/TechD/10x_vs_inhouse/bams/inhouse/bulk/merged_DeadCell_2/genome_results.txt
QualiMap	coverage_histogram	SI-GA-D3	/projects/rcorbettprj2/TechD/10x_vs_inhouse/bams/10X/bulk/SI-GA-D3/raw_data_qualimapReport/coverage_histogram.txt
QualiMap	coverage_histogram	SI-GA-E3	/projects/rcorbettprj2/TechD/10x_vs_inhouse/bams/10X/bulk/SI-GA-E3/raw_data_qualimapReport/coverage_histogram.txt
QualiMap	coverage_histogram	SI-GA-D4	/projects/rcorbettprj2/TechD/10x_vs_inhouse/bams/10X/bulk/SI-GA-D4/raw_data_qualimapReport/coverage_histogram.txt
QualiMap	coverage_histogram	SI-GA-E4	/projects/rcorbettprj2/TechD/10x_vs_inhouse/bams/10X/bulk/SI-GA-E4/raw_data_qualimapReport/coverage_histogram.txt
QualiMap	coverage_histogram	SI-GA-F4	/projects/rcorbettprj2/TechD/10x_vs_inhouse/bams/10X/bulk/SI-GA-F4/raw_data_qualimapReport/coverage_histogram.txt
QualiMap	coverage_histogram	SI-GA-H4	/projects/rcorbettprj2/TechD/10x_vs_inhouse/bams/10X/bulk/SI-GA-H4/raw_data_qualimapReport/coverage_histogram.txt
QualiMap	coverage_histogram	SI-GA-G4	/projects/rcorbettprj2/TechD/10x_vs_inhouse/bams/10X/bulk/SI-GA-G4/raw_data_qualimapReport/coverage_histogram.txt
QualiMap	coverage_histogram	SI-GA-G3	/projects/rcorbettprj2/TechD/10x_vs_inhouse/bams/10X/bulk/SI-GA-G3/raw_data_qualimapReport/coverage_histogram.txt
QualiMap	coverage_histogram	SI-GA-A4	/projects/rcorbettprj2/TechD/10x_vs_inhouse/bams/10X/bulk/SI-GA-A4/raw_data_qualimapReport/coverage_histogram.txt
QualiMap	coverage_histogram	SI-GA-F3	/projects/rcorbettprj2/TechD/10x_vs_inhouse/bams/10X/bulk/SI-GA-F3/raw_data_qualimapReport/coverage_histogram.txt
QualiMap	coverage_histogram	SI-GA-C3	/projects/rcorbettprj2/TechD/10x_vs_inhouse/bams/10X/bulk/SI-GA-C3/raw_data_qualimapReport/coverage_histogram.txt
QualiMap	coverage_histogram	SI-GA-H3	/projects/rcorbettprj2/TechD/10x_vs_inhouse/bams/10X/bulk/SI-GA-H3/raw_data_qualimapReport/coverage_histogram.txt
QualiMap	coverage_histogram	SI-GA-B3	/projects/rcorbettprj2/TechD/10x_vs_inhouse/bams/10X/bulk/SI-GA-B3/raw_data_qualimapReport/coverage_histogram.txt
QualiMap	coverage_histogram	SI-GA-B4	/projects/rcorbettprj2/TechD/10x_vs_inhouse/bams/10X/bulk/SI-GA-B4/raw_data_qualimapReport/coverage_histogram.txt
QualiMap	coverage_histogram	merged_DeadCell	/projects/rcorbettprj2/TechD/10x_vs_inhouse/bams/inhouse/bulk/merged_DeadCell/raw_data_qualimapReport/coverage_histogram.txt
QualiMap	coverage_histogram	SI-GA-C4	/projects/rcorbettprj2/TechD/10x_vs_inhouse/bams/10X/bulk/SI-GA-C4/raw_data_qualimapReport/coverage_histogram.txt
QualiMap	coverage_histogram	merged_DeadCell_1	/projects/rcorbettprj2/TechD/10x_vs_inhouse/bams/inhouse/bulk/merged_DeadCell_1/raw_data_qualimapReport/coverage_histogram.txt
QualiMap	coverage_histogram	SI-GA-A3	/projects/rcorbettprj2/TechD/10x_vs_inhouse/bams/10X/bulk/SI-GA-A3/raw_data_qualimapReport/coverage_histogram.txt
QualiMap	coverage_histogram	merged_DeadCell_2_2	/projects/rcorbettprj2/TechD/10x_vs_inhouse/bams/inhouse/bulk/merged_DeadCell_2_2/raw_data_qualimapReport/coverage_histogram.txt
QualiMap	coverage_histogram	merged_DeadCell_2	/projects/rcorbettprj2/TechD/10x_vs_inhouse/bams/inhouse/bulk/merged_DeadCell_2/raw_data_qualimapReport/coverage_histogram.txt
FastQ Screen	all_sections	SI-GA-G4	/projects/rcorbettprj2/TechD/10x_vs_inhouse/bams/10X/bulk/SI-GA-G4.bam.fq1_out/SI-GA-G4.bam.fq1_screen.txt
FastQ Screen	all_sections	merged_GSC-gDNA_2	/projects/rcorbettprj2/TechD/10x_vs_inhouse/bams/inhouse/bulk/merged_GSC-gDNA_2.bam.fq1_out/merged_GSC-gDNA_2.bam.fq1_screen.txt
FastQ Screen	all_sections	merged_GSC-gDNA_1	/projects/rcorbettprj2/TechD/10x_vs_inhouse/bams/inhouse/bulk/merged_GSC-gDNA_1.bam.fq1_out/merged_GSC-gDNA_1.bam.fq1_screen.txt
FastQ Screen	all_sections	merged_DeadCell_2_2	/projects/rcorbettprj2/TechD/10x_vs_inhouse/bams/inhouse/bulk/merged_DeadCell_2_2.bam.fq1_out/merged_DeadCell_2_2.bam.fq1_screen.txt
FastQ Screen	all_sections	SI-GA-D3	/projects/rcorbettprj2/TechD/10x_vs_inhouse/bams/10X/bulk/SI-GA-D3.bam.fq1_out/SI-GA-D3.bam.fq1_screen.txt
FastQ Screen	all_sections	SI-GA-D4	/projects/rcorbettprj2/TechD/10x_vs_inhouse/bams/10X/bulk/SI-GA-D4.bam.fq1_out/SI-GA-D4.bam.fq1_screen.txt
FastQ Screen	all_sections	SI-GA-F4	/projects/rcorbettprj2/TechD/10x_vs_inhouse/bams/10X/bulk/SI-GA-F4.bam.fq1_out/SI-GA-F4.bam.fq1_screen.txt
FastQ Screen	all_sections	SI-GA-F3	/projects/rcorbettprj2/TechD/10x_vs_inhouse/bams/10X/bulk/SI-GA-F3.bam.fq1_out/SI-GA-F3.bam.fq1_screen.txt
FastQ Screen	all_sections	SI-GA-B3	/projects/rcorbettprj2/TechD/10x_vs_inhouse/bams/10X/bulk/SI-GA-B3.bam.fq1_out/SI-GA-B3.bam.fq1_screen.txt
FastQ Screen	all_sections	merged_GSC-gDNA_2_2	/projects/rcorbettprj2/TechD/10x_vs_inhouse/bams/inhouse/bulk/merged_GSC-gDNA_2_2.bam.fq1_out/merged_GSC-gDNA_2_2.bam.fq1_screen.txt
FastQ Screen	all_sections	SI-GA-B4	/projects/rcorbettprj2/TechD/10x_vs_inhouse/bams/10X/bulk/SI-GA-B4.bam.fq1_out/SI-GA-B4.bam.fq1_screen.txt
FastQ Screen	all_sections	merged_DeadCell_1	/projects/rcorbettprj2/TechD/10x_vs_inhouse/bams/inhouse/bulk/merged_DeadCell_1.bam.fq1_out/merged_DeadCell_1.bam.fq1_screen.txt
FastQ Screen	all_sections	merged_DeadCell_2	/projects/rcorbettprj2/TechD/10x_vs_inhouse/bams/inhouse/bulk/merged_DeadCell_2.bam.fq1_out/merged_DeadCell_2.bam.fq1_screen.txt
FastQ Screen	all_sections	SI-GA-H4	/projects/rcorbettprj2/TechD/10x_vs_inhouse/bams/10X/bulk/SI-GA-H4.bam.fq1_out/SI-GA-H4.bam.fq1_screen.txt
FastQ Screen	all_sections	merged_GSC-NTC_2_2	/projects/rcorbettprj2/TechD/10x_vs_inhouse/bams/inhouse/bulk/merged_GSC-NTC_2_2.bam.fq1_out/merged_GSC-NTC_2_2.bam.fq1_screen.txt
FastQ Screen	all_sections	SI-GA-H3	/projects/rcorbettprj2/TechD/10x_vs_inhouse/bams/10X/bulk/SI-GA-H3.bam.fq1_out/SI-GA-H3.bam.fq1_screen.txt
FastQ Screen	all_sections	merged_GSC-NCC2_2	/projects/rcorbettprj2/TechD/10x_vs_inhouse/bams/inhouse/bulk/merged_GSC-NCC2_2.bam.fq1_out/merged_GSC-NCC2_2.bam.fq1_screen.txt
FastQ Screen	all_sections	SI-GA-E4	/projects/rcorbettprj2/TechD/10x_vs_inhouse/bams/10X/bulk/SI-GA-E4.bam.fq1_out/SI-GA-E4.bam.fq1_screen.txt
FastQ Screen	all_sections	SI-GA-E3	/projects/rcorbettprj2/TechD/10x_vs_inhouse/bams/10X/bulk/SI-GA-E3.bam.fq1_out/SI-GA-E3.bam.fq1_screen.txt
FastQ Screen	all_sections	merged_GSC-NCC2	/projects/rcorbettprj2/TechD/10x_vs_inhouse/bams/inhouse/bulk/merged_GSC-NCC2.bam.fq1_out/merged_GSC-NCC2.bam.fq1_screen.txt
FastQ Screen	all_sections	merged_GSC-CSC_2	/projects/rcorbettprj2/TechD/10x_vs_inhouse/bams/inhouse/bulk/merged_GSC-CSC_2.bam.fq1_out/merged_GSC-CSC_2.bam.fq1_screen.txt
FastQ Screen	all_sections	merged_GSC-CSC_1	/projects/rcorbettprj2/TechD/10x_vs_inhouse/bams/inhouse/bulk/merged_GSC-CSC_1.bam.fq1_out/merged_GSC-CSC_1.bam.fq1_screen.txt
FastQ Screen	all_sections	merged_GSC-NCC1	/projects/rcorbettprj2/TechD/10x_vs_inhouse/bams/inhouse/bulk/merged_GSC-NCC1.bam.fq1_out/merged_GSC-NCC1.bam.fq1_screen.txt
FastQ Screen	all_sections	SI-GA-G3	/projects/rcorbettprj2/TechD/10x_vs_inhouse/bams/10X/bulk/SI-GA-G3.bam.fq1_out/SI-GA-G3.bam.fq1_screen.txt
FastQ Screen	all_sections	SI-GA-A4	/projects/rcorbettprj2/TechD/10x_vs_inhouse/bams/10X/bulk/SI-GA-A4.bam.fq1_out/SI-GA-A4.bam.fq1_screen.txt
FastQ Screen	all_sections	SI-GA-C3	/projects/rcorbettprj2/TechD/10x_vs_inhouse/bams/10X/bulk/SI-GA-C3.bam.fq1_out/SI-GA-C3.bam.fq1_screen.txt
FastQ Screen	all_sections	SI-GA-C4	/projects/rcorbettprj2/TechD/10x_vs_inhouse/bams/10X/bulk/SI-GA-C4.bam.fq1_out/SI-GA-C4.bam.fq1_screen.txt
FastQ Screen	all_sections	merged_GSC-NTC_2	/projects/rcorbettprj2/TechD/10x_vs_inhouse/bams/inhouse/bulk/merged_GSC-NTC_2.bam.fq1_out/merged_GSC-NTC_2.bam.fq1_screen.txt
FastQ Screen	all_sections	merged_GSC-NTC_1	/projects/rcorbettprj2/TechD/10x_vs_inhouse/bams/inhouse/bulk/merged_GSC-NTC_1.bam.fq1_out/merged_GSC-NTC_1.bam.fq1_screen.txt
FastQ Screen	all_sections	merged_GSC-CSC_2_2	/projects/rcorbettprj2/TechD/10x_vs_inhouse/bams/inhouse/bulk/merged_GSC-CSC_2_2.bam.fq1_out/merged_GSC-CSC_2_2.bam.fq1_screen.txt
FastQ Screen	all_sections	SI-GA-A3	/projects/rcorbettprj2/TechD/10x_vs_inhouse/bams/10X/bulk/SI-GA-A3.bam.fq1_out/SI-GA-A3.bam.fq1_screen.txt