##fileformat=VCFv4.3 ##fileDate=20230117 ##source=nanomonsv-0.5.0 ##reference=/projects/jfan_prj/jfan_prj/Nanopore_Testing/2021_nanopore_sv_testing/scratch/depth_testing/POG/COLO829/hg38_no_alt.fa ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##FILTER= ##FILTER= ##FILTER= ##FILTER= ##FILTER= ##FILTER= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##ALT= ##ALT= ##ALT= ##FORMAT= ##FORMAT= #CHROM POS ID REF ALT QUAL FILTER INFO FORMAT TUMOR CONTROL chr1 10372594 r_4 G . PASS END=10862054;SVTYPE=DEL;SVLEN=-489460 TR:VR 42:4 33:0 chr1 16699548 i_3 G . PASS END=16699548;SVTYPE=INS;SVINSLEN=76;SVINSSEQ=GCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCAGCAGCAGCAGCAG TR:VR 26:5 26:0 chr10 122154739 d_113 T . PASS END=122154816;SVTYPE=DEL;SVLEN=-77 TR:VR 26:20 12:0 chr18 56943232 d_402 C . PASS END=56943366;SVTYPE=DEL;SVLEN=-134;SVINSLEN=5;SVINSSEQ=AAAAA TR:VR 11:6 14:0 chr2 1375039 d_434 C . PASS END=1375118;SVTYPE=DEL;SVLEN=-79 TR:VR 25:4 15:0 chr2 183943699 r_215_0 A [chr2:183995871[A . PASS SVTYPE=BND;MATEID=r_215_1 TR:VR 47:3 31:0 chr2 183995871 r_215_1 A [chr2:183943699[A . PASS SVTYPE=BND;MATEID=r_215_0 TR:VR 47:3 31:0 chr20 34877098 r_232_0 G [chr20:34916181[C . PASS SVTYPE=BND;MATEID=r_232_1 TR:VR 41:8 39:0 chr20 34916181 r_232_1 C [chr20:34877098[C . PASS SVTYPE=BND;MATEID=r_232_0 TR:VR 41:8 39:0 chr4 16865692 d_629 C . PASS END=16866340;SVTYPE=DEL;SVLEN=-648 TR:VR 21:7 18:0 chr5 151441991 d_702 T . Too_small_size END=151442035;SVTYPE=DEL;SVLEN=-44 TR:VR 23:4 17:0 chr8 117512389 r_314_0 G [chr8:117537106[A . PASS SVTYPE=BND;MATEID=r_314_1 TR:VR 68:4 19:0 chr8 117537106 r_314_1 A [chr8:117512389[A . PASS SVTYPE=BND;MATEID=r_314_0 TR:VR 68:4 19:0 chr8 70046619 d_805 A . PASS END=70046754;SVTYPE=DEL;SVLEN=-135 TR:VR 20:5 16:0 chr1 105087095 d_20 A . PASS END=105087646;SVTYPE=DEL;SVLEN=-551 TR:VR 18:6 16:0 chr1 169710957 d_70 A . PASS END=169711087;SVTYPE=DEL;SVLEN=-130 TR:VR 26:6 17:0 chr12 42961650 d_152 C . PASS END=42961705;SVTYPE=DEL;SVLEN=-55 TR:VR 11:5 17:0 chr16 34062721 r_120_0 G ]chrY:11326752]CAAAAGTCCTATCACCTGGGTGATCGTGTGTGACAGATGGAGACCCTGTTGAAATAAAGGAGTGGAATGGAAGGGATTGGAATGGAATGGAATGGATAGGAGTGGAGTGAAGTGGAATTGAGTGGAGTGGAGTGGAGTGGAGTGCAGTGGAATGGAATGGAATGGAATGGAATGGTA . Too_low_VAF SVTYPE=BND;MATEID=r_120_1;SVINSLEN=176;SVINSSEQ=CAAAAGTCCTATCACCTGGGTGATCGTGTGTGACAGATGGAGACCCTGTTGAAATAAAGGAGTGGAATGGAAGGGATTGGAATGGAATGGAATGGATAGGAGTGGAGTGAAGTGGAATTGAGTGGAGTGGAGTGGAGTGGAGTGCAGTGGAATGGAATGGAATGGAATGGAATGGT TR:VR 520:3 351:0 chrY 11326752 r_120_1 A AACCATTCCATTCCATTCCATTCCATTCCACTGCACTCCACTCCACTCCACTCCACTCAATTCCACTTCACTCCACTCCTATCCATTCCATTCCATTCCAATCCCTTCCATTCCACTCCTTTATTTCAACAGGGTCTCCATCTGTCACACACGATCACCCAGGTGATAGGACTTTTG[chr16:34062721[ . Too_low_VAF SVTYPE=BND;MATEID=r_120_0;SVINSLEN=176;SVINSSEQ=ACCATTCCATTCCATTCCATTCCATTCCACTGCACTCCACTCCACTCCACTCCACTCAATTCCACTTCACTCCACTCCTATCCATTCCATTCCATTCCAATCCCTTCCATTCCACTCCTTTATTTCAACAGGGTCTCCATCTGTCACACACGATCACCCAGGTGATAGGACTTTTG TR:VR 520:3 351:0 chr18 61614998 d_403 A . PASS END=61615072;SVTYPE=DEL;SVLEN=-74 TR:VR 11:3 14:0 chr2 142809223 r_156 G . PASS END=142949437;SVTYPE=DUP;SVLEN=140214 TR:VR 32:3 34:0 chr2 183943932 r_216 G . PASS END=184000851;SVTYPE=DEL;SVLEN=-56919 TR:VR 47:3 35:0 chr20 34916048 r_233_0 A A]chr20:34985369] . PASS SVTYPE=BND;MATEID=r_233_1 TR:VR 42:6 26:0 chr20 34985369 r_233_1 G G]chr20:34916048] . PASS SVTYPE=BND;MATEID=r_233_0 TR:VR 42:6 26:0 chr3 141405220 d_620 A . PASS END=141405556;SVTYPE=DEL;SVLEN=-336 TR:VR 10:7 11:0 chr4 168793600 r_272 T . PASS END=184973287;SVTYPE=DUP;SVLEN=16179687 TR:VR 36:4 30:0 chr5 154406653 d_703 C . Too_small_size END=154406688;SVTYPE=DEL;SVLEN=-35 TR:VR 23:6 22:0 chr6 158941555 d_742 T . PASS END=158942177;SVTYPE=DEL;SVLEN=-622 TR:VR 15:3 11:0 chr8 117513188 r_315 A . PASS END=117536339;SVTYPE=DEL;SVLEN=-23151 TR:VR 65:5 18:0 chr8 80597364 d_806 A . PASS END=80597455;SVTYPE=DEL;SVLEN=-91 TR:VR 21:4 16:0 chr1 106294611 d_21 T . PASS END=106294837;SVTYPE=DEL;SVLEN=-226 TR:VR 22:5 11:0 chr17 338891 d_352 G . PASS END=338971;SVTYPE=DEL;SVLEN=-80 TR:VR 18:9 13:0 chr18 71719302 d_404 C . Too_small_size END=71719339;SVTYPE=DEL;SVLEN=-37 TR:VR 15:4 15:0 chr2 151734570 r_157 C . PASS END=151736209;SVTYPE=DEL;SVLEN=-1639 TR:VR 20:4 18:0 chr2 183982356 r_217 T . PASS END=184001235;SVTYPE=DUP;SVLEN=18879 TR:VR 32:3 23:0 chr5 165125 d_667 C . Too_small_size END=165112;SVTYPE=INS;SVINSLEN=43;SVINSSEQ=TAACGCTCTGACGGGGCGGGGCTCACAGTAATCCTCTGACGGG TR:VR 26:3 15:0 chr8 117522062 r_316 G . PASS END=117537710;SVTYPE=DUP;SVLEN=15648 TR:VR 59:5 16:0 chr8 82781788 d_807 T . PASS END=82782414;SVTYPE=DEL;SVLEN=-626 TR:VR 19:3 18:0 chr1 10744497 i_1 G . PASS END=10744497;SVTYPE=INS;SVINSLEN=271;SVINSSEQ=AGCAGGGCATGTCCTGGGCACCGACGAGCAGGCATGTCCTGGGCACCACGCAGCAGGCATGTCCTGGGCACCACGAGCAGGCATGTCCTGGGCACCACGAGCAGGCATGTCCTGGGCACCACGAGCAGGCATGTCCTCTGGCACCACGAGCAGGCATGTCCTGGGCACCACGAGCAGGCATGTCCTGGGGCACCACGAGCAGGCATGTCCTGGGCACCACGAGCAGGCATGTCCTGGGCACCACGAGCAGGCATGTCCTGGGCACCACGCA TR:VR 14:4 13:0 chr12 5001477 r_64_0 C ]chr8:19073477]G . PASS SVTYPE=BND;MATEID=r_64_1 TR:VR 27:8 29:0 chr8 19073477 r_64_1 G G[chr12:5001477[ . PASS SVTYPE=BND;MATEID=r_64_0 TR:VR 27:8 29:0 chr18 71913691 r_137 C . PASS END=71922736;SVTYPE=DEL;SVLEN=-9045;SVINSLEN=6;SVINSSEQ=ATATTT TR:VR 27:6 34:0 chr2 152175159 r_158_0 T [chr2:156254698[G . PASS SVTYPE=BND;MATEID=r_158_1 TR:VR 48:10 34:0 chr2 156254698 r_158_1 G [chr2:152175159[G . PASS SVTYPE=BND;MATEID=r_158_0 TR:VR 48:10 34:0 chr2 184043410 r_218_0 G G[chr8:118662203[ . Too_low_VAF SVTYPE=BND;MATEID=r_218_1 TR:VR 88:3 32:0 chr8 118662203 r_218_1 G ]chr2:184043410]G . Too_low_VAF SVTYPE=BND;MATEID=r_218_0 TR:VR 88:3 32:0 chr2 87814293 d_467 C . PASS END=87815831;SVTYPE=DEL;SVLEN=-1538 TR:VR 24:8 17:0 chr22 10718886 d_567 T . PASS END=10719462;SVTYPE=DEL;SVLEN=-576;SVINSLEN=81;SVINSSEQ=CCTTTCGAGTCCATTCCATTCCATTCCATTCCATTCCATTCCAGTCCATTCAATTCCATTCCACTTGAGTCCATTCCATTC TR:VR 110:7 57:1 chr3 150209647 r_259_0 G G]chr7:6990561] . Too_low_VAF SVTYPE=BND;MATEID=r_259_1 TR:VR 62:3 28:0 chr7 6990561 r_259_1 T T]chr3:150209647] . Too_low_VAF SVTYPE=BND;MATEID=r_259_0 TR:VR 62:3 28:0 chr6 161280801 d_743 C . PASS END=161280875;SVTYPE=DEL;SVLEN=-74 TR:VR 20:7 12:0 chr8 117537117 r_317 A . PASS END=117620669;SVTYPE=DUP;SVLEN=83552 TR:VR 77:5 26:0 chr8 84209184 d_808 A . PASS END=84210431;SVTYPE=DEL;SVLEN=-1247 TR:VR 21:6 16:0 chr1 11093791 r_5_0 C [chr1:233202594[A . PASS SVTYPE=BND;MATEID=r_5_1 TR:VR 57:16 19:0 chr1 233202594 r_5_1 A [chr1:11093791[A . PASS SVTYPE=BND;MATEID=r_5_0 TR:VR 57:16 19:0 chr10 128917555 d_114 G . PASS END=128917681;SVTYPE=DEL;SVLEN=-126;SVINSLEN=8;SVINSSEQ=ATGCCAGT TR:VR 26:3 17:0 chr12 5088573 r_65_0 C C[chr8:19073486[ . PASS SVTYPE=BND;MATEID=r_65_1 TR:VR 29:5 21:0 chr8 19073486 r_65_1 G ]chr12:5088573]G . PASS SVTYPE=BND;MATEID=r_65_0 TR:VR 29:5 21:0 chr2 184064823 r_219_0 C ]chr8:118662798]C . Too_low_VAF SVTYPE=BND;MATEID=r_219_1 TR:VR 81:3 27:0 chr8 118662798 r_219_1 C C[chr2:184064823[ . Too_low_VAF SVTYPE=BND;MATEID=r_219_0 TR:VR 81:3 27:0 chr20 57356654 d_538 T . PASS END=57359909;SVTYPE=DEL;SVLEN=-3255;SVINSLEN=8;SVINSSEQ=ATAGGAAT TR:VR 19:7 8:0 chr3 151184345 r_260_0 T T]chr7:146680935] . PASS SVTYPE=BND;MATEID=r_260_1 TR:VR 40:3 32:0 chr7 146680935 r_260_1 T T]chr3:151184345] . PASS SVTYPE=BND;MATEID=r_260_0 TR:VR 40:3 32:0 chr5 173928207 d_704 A . PASS END=173930212;SVTYPE=DEL;SVLEN=-2005 TR:VR 19:7 14:0 chr8 117537266 r_318_0 T T]chr8:117616678] . PASS SVTYPE=BND;MATEID=r_318_1 TR:VR 79:4 25:0 chr8 117616678 r_318_1 C C]chr8:117537266] . PASS SVTYPE=BND;MATEID=r_318_0 TR:VR 79:4 25:0 chr12 64359925 d_154 G . PASS END=64362453;SVTYPE=DEL;SVLEN=-2528 TR:VR 20:8 18:0 chr2 155487033 r_159_0 A [chr8:113038727[C . PASS SVTYPE=BND;MATEID=r_159_1 TR:VR 54:9 30:0 chr8 113038727 r_159_1 C [chr2:155487033[C . PASS SVTYPE=BND;MATEID=r_159_0 TR:VR 54:9 30:0 chr2 184155006 r_220_0 C [chr8:119439539[T . PASS SVTYPE=BND;MATEID=r_220_1 TR:VR 100:5 22:0 chr8 119439539 r_220_1 T [chr2:184155006[T . PASS SVTYPE=BND;MATEID=r_220_0 TR:VR 100:5 22:0 chr2 89674642 r_153 A . PASS END=89677003;SVTYPE=DEL;SVLEN=-2361 TR:VR 35:5 22:0 chr3 156499317 d_622 C . Too_small_size END=156499357;SVTYPE=DEL;SVLEN=-40 TR:VR 20:4 13:0 chr4 182050007 d_662 T . PASS END=182051343;SVTYPE=DEL;SVLEN=-1336 TR:VR 26:3 30:0 chr8 117616491 r_319_0 T [chr8:117689040[A . Too_low_VAF SVTYPE=BND;MATEID=r_319_1 TR:VR 84:4 24:0 chr8 117689040 r_319_1 A [chr8:117616491[A . Too_low_VAF SVTYPE=BND;MATEID=r_319_0 TR:VR 84:4 24:0 chr1 187099406 d_74 A . PASS END=187099637;SVTYPE=DEL;SVLEN=-231 TR:VR 26:14 10:0 chr10 130788924 i_25 A . PASS END=130788931;SVTYPE=INS;SVINSLEN=800;SVINSSEQ=TACAACCTGGTTGAGCAGGGGAAGCAGGAGCAGCAGGGGAGCAGGGGAGCAGGGGAAGCAGGGGAGCAGGGGAGCAGGGAGCAGGGGGAGCAGGGGGAGCAGGGGAGCAGGGAGAGCAGGGGAGCAGGGAAGCAGGGGAAGCAGGGGAGCAGGGGAGCAGGCGAAGGCAGGGGAGCAGGGGAGCAGGGGAAGCAGGGGAGCAGGGGAGCAGGGGAGCAGGGGAAGCAGGGGGAGCAGGGGAGCAGGGGAAGCAGGGGAGCAGGGGAAGCAGGGGAGCAGGGGAGCAGGGGAGCAGGGGAGCAGGGGAGCAGGGGAGCAGGGGAAGCAGGGGAGCAGGGGAGCAGGGGAAGCAGGGGAGCAGGGGAGCAGGGGAAGCAGGGGAGCAGGGGAGCAGGGGAAGCAGGGGAGCAGGCGAGCAGGGGAGCAGGCGAGCAGGGGAGCAGGGGAGCAGGGGGAGCAGGGGAAGCAGGGGAGCAGGCGAGCAGGGGAGCAGGGGAGCAGGGGAAGCAGGGGAGCAGGGGAGAGGGAGCAGGGGAGCAGGGGAGCAGGGGAGCAGGGGAGCAGGCGAGCAGGCGAGCAGGGGAGCAGGGGAGCAGGGGAGCAGGGGAGCAGGGGAGCAGGGGAGCAGGGCGAGCAGGGGAGCAGGGGAGCAGGGGGAGCAGGGGCAGGGGAGCAGGGGAGCAGGGGAAGCAGGGGGAGCAGGGGAGCAGGGGAGCAGGGAAGCAGGGGAGCAGGGGAGCAGGGGAGCAGGGGAGCAGGGAGCAGGGAGCAGGGGAGCAGGGGAGCAGGGGAGCAGCAGG TR:VR 25:4 18:0 chr11 22073847 i_42 T . PASS END=22073847;SVTYPE=INS;SVINSLEN=422;SVINSSEQ=AAAAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGGAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTGAAACTTAGAGTATAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA TR:VR 16:3 19:0 chr12 6808768 r_66_0 T ]chr14:33388943]T . PASS SVTYPE=BND;MATEID=r_66_1 TR:VR 30:4 28:0 chr14 33388943 r_66_1 T T[chr12:6808768[ . PASS SVTYPE=BND;MATEID=r_66_0 TR:VR 30:4 28:0 chr2 155487229 r_160_0 G G[chr8:113028295[ . PASS SVTYPE=BND;MATEID=r_160_1 TR:VR 61:9 28:0 chr8 113028295 r_160_1 T ]chr2:155487229]T . PASS SVTYPE=BND;MATEID=r_160_0 TR:VR 61:9 28:0 chr2 184158820 r_221_0 G G]chr2:195922094] . Too_low_VAF SVTYPE=BND;MATEID=r_221_1 TR:VR 84:4 32:0 chr2 195922094 r_221_1 C C]chr2:184158820] . Too_low_VAF SVTYPE=BND;MATEID=r_221_0 TR:VR 84:4 32:0 chr8 118469481 d_819 G . PASS END=118469554;SVTYPE=DEL;SVLEN=-73 TR:VR 41:4 20:0 chr1 116889856 d_22 G . PASS END=116890030;SVTYPE=DEL;SVLEN=-174 TR:VR 20:6 16:0 chr1 1893077 r_1_0 G ]chr17:41735583]A . PASS SVTYPE=BND;MATEID=r_1_1 TR:VR 55:17 32:0 chr17 41735583 r_1_1 A A[chr1:1893077[ . PASS SVTYPE=BND;MATEID=r_1_0 TR:VR 55:17 32:0 chr12 68378934 r_68_0 A [chr5:173715112[G . PASS SVTYPE=BND;MATEID=r_68_1 TR:VR 40:3 38:0 chr5 173715112 r_68_1 G [chr12:68378934[G . PASS SVTYPE=BND;MATEID=r_68_0 TR:VR 40:3 38:0 chr17 36486361 d_374 T . Too_small_size END=36486397;SVTYPE=DEL;SVLEN=-36 TR:VR 12:6 12:0 chr19 17642341 d_411 G . PASS END=17642396;SVTYPE=DEL;SVLEN=-55 TR:VR 26:14 22:0 chr2 156254879 r_161_0 T TT]chr8:113051791] . PASS SVTYPE=BND;MATEID=r_161_1;SVINSLEN=1;SVINSSEQ=T TR:VR 62:10 33:0 chr8 113051791 r_161_1 A AA]chr2:156254879] . PASS SVTYPE=BND;MATEID=r_161_0;SVINSLEN=1;SVINSSEQ=A TR:VR 62:10 33:0 chr3 174881342 d_623 T . Too_small_size END=174881380;SVTYPE=DEL;SVLEN=-38 TR:VR 18:3 15:0 chr6 167953039 d_745 T . PASS END=167953186;SVTYPE=DEL;SVLEN=-147;SVINSLEN=1;SVINSSEQ=A TR:VR 14:5 21:0 chr8 118676625 r_320 C . Too_low_VAF END=118824389;SVTYPE=DEL;SVLEN=-147764 TR:VR 103:4 26:0 chr8 88047567 d_810 C . Too_small_size END=88047602;SVTYPE=DEL;SVLEN=-35 TR:VR 17:4 16:0 chr1 117193621 r_24 A . PASS END=117197385;SVTYPE=DUP;SVLEN=3764 TR:VR 33:4 19:0 chr1 192276600 d_75 C . Too_small_size END=192276636;SVTYPE=DEL;SVLEN=-36 TR:VR 20:6 18:0 chr11 287347 i_39 G . PASS END=287348;SVTYPE=INS;SVINSLEN=245;SVINSSEQ=GTGAGGAGGGGTAGGAGGTCAGGGAACCCAGGCAGGTGCAGGAAGGGGTTTTGCGGGTGGAGCTTGCGTGCTTGGAAAGCTCCAGAAGCAGCAAGGAAGCCAGGTAGCCGCAGCGGAGTAGGGGATGGGGAGGAGATGAGGTCAGGGAACCCAGGCAGGTGCAGGAGGGGGTTTGCGGGTGGAGCTTGCGTGCTTGGAAAGTTCCAGAAGCAGCAAAGAGGAAGCCAGGTATGGCCGCAGCGGGG TR:VR 11:3 7:0 chr12 68379914 r_69_0 A AG]chr5:159255176] . PASS SVTYPE=BND;MATEID=r_69_1;SVINSLEN=1;SVINSSEQ=G TR:VR 52:3 37:0 chr5 159255176 r_69_1 A AC]chr12:68379914] . PASS SVTYPE=BND;MATEID=r_69_0;SVINSLEN=1;SVINSSEQ=C TR:VR 52:3 37:0 chr19 18415229 d_412 G . PASS END=18415288;SVTYPE=DEL;SVLEN=-59 TR:VR 22:4 13:0 chr2 184633034 r_223_0 C C]chr2:196027307] . PASS SVTYPE=BND;MATEID=r_223_1 TR:VR 46:3 34:0 chr2 196027307 r_223_1 A A]chr2:184633034] . PASS SVTYPE=BND;MATEID=r_223_0 TR:VR 46:3 34:0 chr3 175840236 d_624 T . PASS END=175840432;SVTYPE=DEL;SVLEN=-196 TR:VR 20:3 18:0 chr8 119145994 r_321_0 C C]chr8:119440396] . Too_low_VAF SVTYPE=BND;MATEID=r_321_1 TR:VR 104:4 30:0 chr8 119440396 r_321_1 A A]chr8:119145994] . Too_low_VAF SVTYPE=BND;MATEID=r_321_0 TR:VR 104:4 30:0 chr8 92622903 d_811 A . PASS END=92622998;SVTYPE=DEL;SVLEN=-95 TR:VR 17:10 17:0 chr1 1184116 r_0_0 C [chr17:39004778[C . PASS SVTYPE=BND;MATEID=r_0_1 TR:VR 25:8 34:0 chr17 39004778 r_0_1 C [chr1:1184116[C . PASS SVTYPE=BND;MATEID=r_0_0 TR:VR 25:8 34:0 chr11 2900687 d_123 C . PASS END=2900845;SVTYPE=DEL;SVLEN=-158 TR:VR 12:5 10:0 chr12 7058421 d_147 A . Too_small_size END=7058460;SVTYPE=DEL;SVLEN=-39 TR:VR 8:3 17:0 chr19 2009315 r_138 C . PASS END=2042304;SVTYPE=DUP;SVLEN=32989 TR:VR 47:14 23:0 chr2 157340578 d_508 T . PASS END=157340917;SVTYPE=DEL;SVLEN=-339;SVINSLEN=5;SVINSSEQ=TTCTC TR:VR 22:4 8:0 chr2 190897303 d_513 T . PASS END=190897370;SVTYPE=DEL;SVLEN=-67 TR:VR 19:8 12:0 chr3 176811191 r_262_0 A ]chr5:169239819]T . PASS SVTYPE=BND;MATEID=r_262_1 TR:VR 39:3 30:0 chr5 169239819 r_262_1 T T[chr3:176811191[ . PASS SVTYPE=BND;MATEID=r_262_0 TR:VR 39:3 30:0 chr5 178684214 d_707 T . PASS END=178684282;SVTYPE=DEL;SVLEN=-68 TR:VR 22:15 14:0 chr6 169231845 d_747 T . PASS END=169231913;SVTYPE=DEL;SVLEN=-68 TR:VR 12:5 14:0 chr8 97906046 d_812 T . PASS END=97906226;SVTYPE=DEL;SVLEN=-180 TR:VR 24:7 14:0 chr1 12004407 r_6_0 T T]chr17:40458989] . PASS SVTYPE=BND;MATEID=r_6_1 TR:VR 47:10 42:0 chr17 40458989 r_6_1 A A]chr1:12004407] . PASS SVTYPE=BND;MATEID=r_6_0 TR:VR 47:10 42:0 chr1 1933619 r_2_0 G G[chr17:41735682[ . PASS SVTYPE=BND;MATEID=r_2_1 TR:VR 43:7 31:0 chr17 41735682 r_2_1 T ]chr1:1933619]T . PASS SVTYPE=BND;MATEID=r_2_0 TR:VR 43:7 31:0 chr11 29464129 d_127 A . PASS END=29465065;SVTYPE=DEL;SVLEN=-936 TR:VR 14:3 12:0 chr12 71380711 d_155 T . PASS END=71381945;SVTYPE=DEL;SVLEN=-1234 TR:VR 14:4 13:0 chr17 39441585 d_376 C . PASS END=39442380;SVTYPE=DEL;SVLEN=-795 TR:VR 29:7 22:0 chr2 157694266 r_162_0 A [chr2:194843732[T . PASS SVTYPE=BND;MATEID=r_162_1 TR:VR 45:5 34:0 chr2 194843732 r_162_1 T [chr2:157694266[T . PASS SVTYPE=BND;MATEID=r_162_0 TR:VR 45:5 34:0 chr2 195356029 i_229 T . PASS END=195356029;SVTYPE=INS;SVINSLEN=63;SVINSSEQ=ATGGTATTGCTATATTTAAACATTACAAGATGTAGCAAAAAATAAAAGCTAAACATGTACCTA TR:VR 41:10 24:0 chr3 181401728 d_625 A . PASS END=181401896;SVTYPE=DEL;SVLEN=-168 TR:VR 12:9 17:0 chr8 124715296 r_322_0 C C]chr8:127123810] . PASS SVTYPE=BND;MATEID=r_322_1 TR:VR 76:8 35:0 chr8 127123810 r_322_1 A A]chr8:124715296] . PASS SVTYPE=BND;MATEID=r_322_0 TR:VR 76:8 35:0 chr8 98709856 d_813 T . PASS END=98713104;SVTYPE=DEL;SVLEN=-3248 TR:VR 38:11 17:0 chr1 197621339 i_12 A . PASS END=197621339;SVTYPE=INS;SVINSLEN=1421;SVINSSEQ=GACAACAAAAACAAGCAATGGGGAAAGGAGTCCCTATTCAGCTATGCTAGCTGGTGTAACTGGCTAGCCCTAAACAGAAGGTTGAAACTGGACCCTTTCCTTACACCATATACAAAAATCAACTCAAGATTGATTAAAGACTTAAATGTAACACCTGAAACTATAAAAATGTTGGAAGATAATCTAGGAAATACCATGCTGGACACATGCCCTTGGCAAAGATTTTATGATGAAGACACGTAACACAGTTGCAACAAAAACAAACATTGACAAATGGGACCTAATTAAACTAAAGAGCTTCAGCAAAATAAGCTATCAACAGAATAAACAGACAACGTACAGAAGGGGAGGAAATATGTATAACCTATGCATCCAACAAAAGTCTAATATCCAGAATATATAAGGAATTTAAACAAATTAATCAGCAAGAAATAAACAACCCCATTAAAAAACTGGGCAAAGGACATGAACATTTTTCCAAAGAAGACACCCACATGGCCAACAAATATATGAAAAAATGCTCACCATTACTAATCATTAGAGAAATGAAAATCAAAACCACAATGAGATACCACCTCACATCAGACAAAATGGCTATTACTAAAAAGTAAAAAATAACAGAAGGTCAAAGTGTTGCAGAGAAAAGGGAATGCTTAAACCCTGCTAGTGGGAATGTAAATTAGTTCAGCTATTGTGCAAAGCAGAGTGGCAATTTCCCCAAAGAACTCAAAACTGAATTATCACTTGACACAGCAATCCTATTTTTTTAAATTATACTTTAAGTTCTAGGGTACATGTGCACAACATGGAAGTTTGTTACATATGTATACATATGCCATGTTGGTGTGCTGCACCCATTAACTCGTCATTTACATTAGGTATATCTCCTAATGCTTTCCCTCCCCCCTCCCCCCACCCCACAACAATAGGGTACATGTGCACAAAGTGCAGGTTTGTTACATATGTATACATGTGCCATGTTGGTGTGCTGCACCCATTAACTCGTCATTTACATTAGGTATATCTCCTAATGCTTTCCCTCCCCCCTCCCCCTACCCCACAACAGGCTCCGGTGTGTGATGTTCCCCTTCCAGTGTCCAAGTGTTCTCATTGTTCAATTCCCACCTATGAGTGAGAACATGCGGTGTATGGTTTTTTATTCTTGCGAAAGTTTGCTGAGAATGATGGTTTCCAGCTTCATCCATGTCCCTGCAAAGGACATGAATTCATCGTTTTTTTTTATGGCTGCATAGTATTCCATGGTGTATATCTGCCACATTTTCTTAATCCAGTCTATCATTGTTGGACATTTGGGTTGGTTCCAAGTCTTTGCTATTGCGAATAGTGCCACAATAAACATATGGTGCATGTGTCTTTATAGCAGCATGATTTATAATCCTTTGGGTATATACCCAGTAATG TR:VR 24:4 15:0 chr11 34034826 d_128 A . PASS END=34034877;SVTYPE=DEL;SVLEN=-51 TR:VR 21:4 11:0 chr12 72660619 d_156 C . PASS END=72662873;SVTYPE=DEL;SVLEN=-2254 TR:VR 20:6 15:0 chr16 34576677 i_138 C . Too_low_VAF END=34576677;SVTYPE=INS;SVINSLEN=101;SVINSSEQ=ATCGAATGGACTCGAATAGGAATCATCATCGAATGGAATCGAATGAAATCATAATCGAATGGAATCGAATGGAATCATCATCGAATACAGTCGAATGGAAA TR:VR 92:3 69:1 chr2 1594515 r_146_0 C CC[chr9:35942493[ . PASS SVTYPE=BND;MATEID=r_146_1;SVINSLEN=1;SVINSSEQ=C TR:VR 48:3 36:0 chr9 35942493 r_146_1 C ]chr2:1594515]GC . PASS SVTYPE=BND;MATEID=r_146_0;SVINSLEN=1;SVINSSEQ=G TR:VR 48:3 36:0 chr2 197397406 r_224_0 T T]chr8:119892169] . Too_low_VAF SVTYPE=BND;MATEID=r_224_1 TR:VR 62:3 26:0 chr8 119892169 r_224_1 T T]chr2:197397406] . Too_low_VAF SVTYPE=BND;MATEID=r_224_0 TR:VR 62:3 26:0 chr3 18587039 d_603 A . PASS END=18587535;SVTYPE=DEL;SVLEN=-496 TR:VR 16:4 12:0 chr1 20092802 r_10_0 G G]chr13:111323650] . PASS SVTYPE=BND;MATEID=r_10_1 TR:VR 31:4 25:0 chr13 111323650 r_10_1 C C]chr1:20092802] . PASS SVTYPE=BND;MATEID=r_10_0 TR:VR 31:4 25:0 chr11 38987920 d_129 T . PASS END=38987988;SVTYPE=DEL;SVLEN=-68;SVINSLEN=9;SVINSSEQ=TAAATGAAT TR:VR 19:15 18:0 chr12 75406820 d_157 C . PASS END=75406966;SVTYPE=DEL;SVLEN=-146 TR:VR 23:9 9:0 chr19 23134439 d_415 G . PASS END=23134481;SVTYPE=INS;SVINSLEN=88;SVINSSEQ=TGAGGGGCGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGACCCCTCTGCCTGGCCAGCCGCCCCGTCCTGGAGGGTGGGGGGGGT TR:VR 22:6 21:0 chr2 160238530 r_163 T . PASS END=160268535;SVTYPE=DUP;SVLEN=30005 TR:VR 39:5 31:0 chr2 198226828 r_225_0 A A]chr2:199968579] . PASS SVTYPE=BND;MATEID=r_225_1 TR:VR 53:6 24:0 chr2 199968579 r_225_1 C C]chr2:198226828] . PASS SVTYPE=BND;MATEID=r_225_0 TR:VR 53:6 24:0 chr20 63319633 d_542 C . PASS END=63319696;SVTYPE=DEL;SVLEN=-63 TR:VR 12:5 14:0 chr3 187045666 d_626 A . PASS END=187045829;SVTYPE=DEL;SVLEN=-163 TR:VR 20:10 10:0 chr6 20002281 d_713 A . PASS END=20002384;SVTYPE=DEL;SVLEN=-103 TR:VR 26:13 17:0 chr9 100371306 d_839 T . PASS END=100373529;SVTYPE=DEL;SVLEN=-2223 TR:VR 11:4 18:0 chr1 204471715 i_13 T . PASS END=204471715;SVTYPE=INS;SVINSLEN=367;SVINSSEQ=CACTGGTATTTATCACATGATGGCTTCACTGGTATTCTCACATGATGGCTTCACTGGTATTCTCACATGATGGCTTCACTGGTATTCTCACATGATGGCTTCACTGGTATTCTCACATGATGGCTTCACTGGTATTCTCACATGATGGCTTCACTGGTATTCTCACATGATGGCTTCACTGGTATTCTTTCCACATGGTAAGCTTCACTGGTATTCTCACATGATGGCTTCACTGGTATTCTCACATGATGGCTTCACTGGTATTCTCATGATGGCTTCACTGGTATTCTCACATGATGGCTTCACTGGTATTCTCACATGATGGCTTCACTGGTATTCTCACATGATGGCTTCACTCACAGTAAAC TR:VR 25:3 14:0 chr11 42590003 r_45_0 A A]chr11:46489991] . PASS SVTYPE=BND;MATEID=r_45_1 TR:VR 39:13 25:0 chr11 46489991 r_45_1 T T]chr11:42590003] . PASS SVTYPE=BND;MATEID=r_45_0 TR:VR 39:13 25:0 chr12 76167961 d_158 A . PASS END=76168008;SVTYPE=DEL;SVLEN=-47 TR:VR 15:7 12:0 chr17 40103550 r_132 A . PASS END=40115128;SVTYPE=DUP;SVLEN=11578 TR:VR 40:4 19:0 chr2 162336408 r_164 T . PASS END=177022695;SVTYPE=DUP;SVLEN=14686287 TR:VR 66:10 28:0 chr2 198732834 r_226_0 T [chr8:98976694[T . PASS SVTYPE=BND;MATEID=r_226_1 TR:VR 42:7 31:0 chr8 98976694 r_226_1 T [chr2:198732834[T . PASS SVTYPE=BND;MATEID=r_226_0 TR:VR 42:7 31:0 chr6 29649548 r_285 A . PASS END=29665580;SVTYPE=DEL;SVLEN=-16032 TR:VR 30:14 23:0 chr7 201882 r_294_0 G G]chr9:138239786] . PASS SVTYPE=BND;MATEID=r_294_1 TR:VR 71:5 48:0 chr9 138239786 r_294_1 C C]chr7:201882] . PASS SVTYPE=BND;MATEID=r_294_0 TR:VR 71:5 48:0 chr8 127046669 r_325 T . PASS END=127078279;SVTYPE=DUP;SVLEN=31610 TR:VR 80:5 24:0 chr1 207213813 d_77 A . PASS END=207213891;SVTYPE=DEL;SVLEN=-78 TR:VR 18:3 17:0 chr10 131884148 i_30 A . PASS END=131884148;SVTYPE=INS;SVINSLEN=122;SVINSSEQ=GGGACAGACACCTGCTGGGGAGGGACGGACACCTGCTGGGGAGGGACGGACACCTGCTGGGGGACACGGACACCTGCTGGGGAGGGACAGACACCTGCTGGAGAGGGACAGACACCTGCTGG TR:VR 29:4 11:0 chr11 42590019 r_46_0 A [chr11:46490437[C . PASS SVTYPE=BND;MATEID=r_46_1 TR:VR 38:11 25:0 chr11 46490437 r_46_1 C [chr11:42590019[C . PASS SVTYPE=BND;MATEID=r_46_0 TR:VR 38:11 25:0 chr12 78358047 d_159 G . PASS END=78358468;SVTYPE=DEL;SVLEN=-421 TR:VR 18:5 21:0 chr14 21710282 d_194 G . PASS END=21710532;SVTYPE=DEL;SVLEN=-250;SVINSLEN=1;SVINSSEQ=T TR:VR 18:3 15:0 chr19 2351971 d_408 C . PASS END=2359809;SVTYPE=DEL;SVLEN=-7838 TR:VR 19:11 22:0 chr2 162341192 r_165_0 T T]chr2:177655756] . PASS SVTYPE=BND;MATEID=r_165_1 TR:VR 56:10 28:0 chr2 177655756 r_165_1 A A]chr2:162341192] . PASS SVTYPE=BND;MATEID=r_165_0 TR:VR 56:10 28:0 chr2 199963371 r_227_0 A ]chr8:128663792]G . Too_low_VAF SVTYPE=BND;MATEID=r_227_1 TR:VR 65:3 32:0 chr8 128663792 r_227_1 G G[chr2:199963371[ . Too_low_VAF SVTYPE=BND;MATEID=r_227_0 TR:VR 65:3 32:0 chr8 128080640 d_820 T . PASS END=128080969;SVTYPE=DEL;SVLEN=-329 TR:VR 30:3 21:0 chr9 110097592 d_840 C . PASS END=110097696;SVTYPE=DEL;SVLEN=-104;SVINSLEN=24;SVINSSEQ=CGGACGGGGCGACAGGGCAGAGGC TR:VR 14:4 15:0 chr11 56576021 d_130 T . PASS END=56576438;SVTYPE=DEL;SVLEN=-417 TR:VR 18:3 14:0 chr2 162349904 r_166 A . PASS END=173091939;SVTYPE=DUP;SVLEN=10742035 TR:VR 63:7 27:0 chr9 124127993 d_841 T . PASS END=124128146;SVTYPE=DEL;SVLEN=-153 TR:VR 17:5 13:0 chr1 224349782 d_78 A . PASS END=224349865;SVTYPE=DEL;SVLEN=-83 TR:VR 17:8 16:0 chr10 131885267 i_32 G . PASS END=131885291;SVTYPE=INS;SVINSLEN=404;SVINSSEQ=GGGAGGGACAGACACCTGCTGGGGGGACACAGACACCTGCTGGGGAGGGACAGACACCTGCTGGGGGAGGGACGGACACCTGCTGGGGGACACAGACACCTGCTGGGGAGGGACAGACACCTGCTGGGGAGGGACAGACACCTGCCTGCTGGGGAGGGACAGACACCTGCTGGGGAGGGACAGACACCTGCTGGGGAGGGACGGACACCTGCTGGGGAGGGACAGACACCTGCTGGGGAGGGACAGACACCTGCTGGGGAGGGACGGACACCTGCTGGGGAGGGACGGACACCTGCTGGGGAGGGACAGACACCTGCTGGAGAGGGACAGACACCTGCTGGGGAGGGACAGACACCTGCTGGGGAGGGACGGACACCTGCTGCTGGAGAGGGACGGACACCTCC TR:VR 27:5 11:0 chr11 57967368 r_47_0 A [chr11:57968367[G . PASS SVTYPE=BND;MATEID=r_47_1 TR:VR 36:7 19:0 chr11 57968367 r_47_1 G [chr11:57967368[G . PASS SVTYPE=BND;MATEID=r_47_0 TR:VR 36:7 19:0 chr14 30741456 d_196 A . PASS END=30741618;SVTYPE=DEL;SVLEN=-162 TR:VR 24:4 11:0 chr2 162363846 r_167 T . PASS END=174329719;SVTYPE=DEL;SVLEN=-11965873;SVINSLEN=3;SVINSSEQ=ATG TR:VR 63:6 28:0 chr2 200402465 r_228_0 T [chr2:200423928[G . PASS SVTYPE=BND;MATEID=r_228_1 TR:VR 50:4 22:0 chr2 200423928 r_228_1 G [chr2:200402465[G . PASS SVTYPE=BND;MATEID=r_228_0 TR:VR 50:4 22:0 chr5 259632 d_669 C . PASS END=260466;SVTYPE=DEL;SVLEN=-834;SVINSLEN=3;SVINSSEQ=CGA TR:VR 28:5 13:0 chr7 22915228 r_297_0 T T]chr7:22915747] . PASS SVTYPE=BND;MATEID=r_297_1 TR:VR 53:13 17:0 chr7 22915747 r_297_1 T T]chr7:22915228] . PASS SVTYPE=BND;MATEID=r_297_0 TR:VR 53:13 17:0 chr9 128113929 r_334 A . PASS END=128124799;SVTYPE=DUP;SVLEN=10870 TR:VR 21:3 18:0 chr1 225604733 r_29_0 C ]chr8:116014691]G . PASS SVTYPE=BND;MATEID=r_29_1 TR:VR 51:11 34:0 chr8 116014691 r_29_1 G G[chr1:225604733[ . PASS SVTYPE=BND;MATEID=r_29_0 TR:VR 51:11 34:0 chr2 200840723 d_515 G . PASS END=200841698;SVTYPE=DEL;SVLEN=-975 TR:VR 26:6 21:0 chr20 9816371 d_525 G . PASS END=9816508;SVTYPE=DEL;SVLEN=-137 TR:VR 18:3 16:0 chr3 195898080 r_263 A . PASS END=195956328;SVTYPE=DUP;SVLEN=58248 TR:VR 28:4 24:0 chr5 26279508 d_674 A . PASS END=26280089;SVTYPE=DEL;SVLEN=-581 TR:VR 18:4 8:0 chr1 225605329 r_30 T . PASS END=241566415;SVTYPE=DEL;SVLEN=-15961086;SVINSLEN=1;SVINSSEQ=A TR:VR 52:10 37:0 chr11 61561038 r_49_0 C [chr11:61563412[A . PASS SVTYPE=BND;MATEID=r_49_1 TR:VR 15:4 21:0 chr11 61563412 r_49_1 A [chr11:61561038[A . PASS SVTYPE=BND;MATEID=r_49_0 TR:VR 15:4 21:0 chr19 252837 i_183 G . PASS END=252837;SVTYPE=INS;SVINSLEN=96;SVINSSEQ=CCTGCTTCATGGCTGAAATCGTGTTTTGACCAGCTATGTGTGTCCCTTAATCCACTCAAGTAGATGTCTAAAATTAACTGTCAGAATATTTATGCC TR:VR 29:3 19:0 chr2 163066206 r_168 C . PASS END=164183673;SVTYPE=DEL;SVLEN=-1117467 TR:VR 48:13 27:0 chr2 201382576 r_229_0 T ]chr8:134337141]T . PASS SVTYPE=BND;MATEID=r_229_1 TR:VR 64:14 33:0 chr8 134337141 r_229_1 T T[chr2:201382576[ . PASS SVTYPE=BND;MATEID=r_229_0 TR:VR 64:14 33:0 chr5 27586843 d_675 G . PASS END=27586933;SVTYPE=DEL;SVLEN=-90 TR:VR 19:6 26:0 chr7 26190180 r_298 T . PASS END=26193830;SVTYPE=DEL;SVLEN=-3650 TR:VR 26:14 10:0 chr1 227380904 d_79 C . PASS END=227381446;SVTYPE=DEL;SVLEN=-542 TR:VR 16:3 14:0 chr11 63778583 r_50 A . PASS END=63891004;SVTYPE=DEL;SVLEN=-112421;SVINSLEN=12;SVINSSEQ=AATATCAACCTC TR:VR 23:3 28:0 chr2 1640377 d_435 G . PASS END=1640480;SVTYPE=DEL;SVLEN=-103 TR:VR 16:7 24:0 chr2 201388304 r_230_0 T TAGATGAATTATATGATT]chr2:201390429] . PASS SVTYPE=BND;MATEID=r_230_1;SVINSLEN=17;SVINSSEQ=AGATGAATTATATGATT TR:VR 38:8 22:0 chr2 201390429 r_230_1 T TAATCATATAATTCATCT]chr2:201388304] . PASS SVTYPE=BND;MATEID=r_230_0;SVINSLEN=17;SVINSSEQ=AATCATATAATTCATCT TR:VR 38:8 22:0 chr4 37591116 d_630 T . PASS END=37591348;SVTYPE=DEL;SVLEN=-232;SVINSLEN=1;SVINSSEQ=G TR:VR 13:7 15:0 chr5 28548421 r_273_0 C CAAA]chr5:42954193] . PASS SVTYPE=BND;MATEID=r_273_1;SVINSLEN=3;SVINSSEQ=AAA TR:VR 39:5 23:0 chr5 42954193 r_273_1 G GTTT]chr5:28548421] . PASS SVTYPE=BND;MATEID=r_273_0;SVINSLEN=3;SVINSSEQ=TTT TR:VR 39:5 23:0 chr6 35327702 d_719 C . PASS END=35329494;SVTYPE=DEL;SVLEN=-1792 TR:VR 21:10 19:0 chr9 130376506 d_843 T . PASS END=130377871;SVTYPE=DEL;SVLEN=-1365 TR:VR 14:6 21:0 chr1 231987939 i_14 A . PASS END=231987969;SVTYPE=INS;SVINSLEN=134;SVINSSEQ=TATTAGACAATTAAAATACATTCAATGGGACGGTTTTCAAATTTTGAATAGTAAACACACATACACACACACACACACACACACAAAATCTAAGAACAATAAATACTTTAAAATTCTTCGGTGGGCGGATCACG TR:VR 28:9 15:0 chr11 65094029 d_131 G . PASS END=65099290;SVTYPE=DEL;SVLEN=-5261;SVINSLEN=1;SVINSSEQ=C TR:VR 12:3 13:0 chr14 40878225 d_198 C . PASS END=40878273;SVTYPE=DEL;SVLEN=-48 TR:VR 21:14 7:0 chr2 164285375 r_169_0 G G]chr2:175544905] . PASS SVTYPE=BND;MATEID=r_169_1 TR:VR 81:7 30:0 chr2 175544905 r_169_1 C C]chr2:164285375] . PASS SVTYPE=BND;MATEID=r_169_0 TR:VR 81:7 30:0 chr2 206190650 d_516 A . PASS END=206190721;SVTYPE=DEL;SVLEN=-71 TR:VR 18:7 16:0 chr4 43615681 i_313 G . PASS END=43615681;SVTYPE=INS;SVINSLEN=52;SVINSSEQ=GTTAGGGTTAGGGTTAGGGTTAGGGTTAGGGTTAGGGTTAGGGTTAGGGTTA TR:VR 17:5 14:0 chr5 34059686 d_676 C . PASS END=34059780;SVTYPE=DEL;SVLEN=-94 TR:VR 11:6 17:0 chr7 3141871 d_755 T . PASS END=3141939;SVTYPE=DEL;SVLEN=-68 TR:VR 31:4 16:0 chr9 131129909 d_844 A . PASS END=131130021;SVTYPE=DEL;SVLEN=-112 TR:VR 9:4 8:0 chr1 232145886 d_80 T . PASS END=232146214;SVTYPE=DEL;SVLEN=-328 TR:VR 11:3 13:0 chr11 65500972 d_132 C . PASS END=65501517;SVTYPE=DEL;SVLEN=-545 TR:VR 6:3 12:0 chr14 41061072 d_199 T . Too_small_size END=41061116;SVTYPE=DEL;SVLEN=-44 TR:VR 34:5 17:0 chr17 4594846 r_130 C . PASS END=4606400;SVTYPE=DEL;SVLEN=-11554 TR:VR 25:4 15:0 chr2 165131523 d_509 A . PASS END=165131648;SVTYPE=DEL;SVLEN=-125 TR:VR 27:9 14:0 chr3 30372036 r_245_0 A A]chr3:30372380] . PASS SVTYPE=BND;MATEID=r_245_1 TR:VR 23:3 19:0 chr3 30372380 r_245_1 T T]chr3:30372036] . PASS SVTYPE=BND;MATEID=r_245_0 TR:VR 23:3 19:0 chr1 233494622 d_81 G . Too_small_size END=233494665;SVTYPE=DEL;SVLEN=-43 TR:VR 29:8 20:0 chr11 65686382 r_51 T . PASS END=66969945;SVTYPE=DUP;SVLEN=1283563 TR:VR 36:3 34:0 chr14 42339779 d_200 A . PASS END=42340314;SVTYPE=DEL;SVLEN=-535 TR:VR 16:3 17:0 chr2 166397439 d_510 T . Too_small_size END=166397484;SVTYPE=DEL;SVLEN=-45 TR:VR 32:3 6:0 chr2 20859793 d_440 A . PASS END=20859890;SVTYPE=DEL;SVLEN=-97;SVINSLEN=5;SVINSSEQ=GCTTG TR:VR 19:3 12:0 chr21 10800290 i_254 A . Too_low_VAF END=10800290;SVTYPE=INS;SVINSLEN=542;SVINSSEQ=GAAATATCTCACATAAAAAGTATAAATAGAAGGTTTCTGAGAAACTTCCTTTGAATGTGTGCATTCATCTCACCAACCAAAAACGTTTGTTTTCTTTGAGCAGGTCTGGACAGTCTGTTACCATATCTTCTAAGGGATAATTGTGAGCCGATGGAAGCCTCTGGTGAAACAGGAAATGTCTTCAGCATAAAAACGAGACAGAAGCCAAGCTCAGAAACGTCTTAGTGATTTGACCATTCATCTCAGAAGAGTTGAAACTTTACTATTCATTGAGCAGTTTGGAAACAGTCATTTTCTAGTACTCTGCAAATGGATATTTGGAGCACTCTGAGGCCTATGGTGAAAAAGGAAATATATTCAATATAAATCAGACTGAAGCATTCATAGAAACTTCTTTGAGATGTGTGCATTCATCTCACCGACTAGAATATTTCTTTTTATTGAGCAGATTTGGAACAATCTTTTAGTAGAATCTGCAAAGTGTTTATGCTGTGAGTGCTTTGAGGAATATGGTGGAAAATGAAATACCTTCACAAAAAAAC TR:VR 123:3 65:0 chr3 33121671 d_605 A . PASS END=33121840;SVTYPE=DEL;SVLEN=-169 TR:VR 14:6 18:0 chr4 48691694 d_631 A . PASS END=48691945;SVTYPE=DEL;SVLEN=-251 TR:VR 13:5 18:0 chr5 34888749 r_274 G . PASS END=41480657;SVTYPE=DEL;SVLEN=-6591908 TR:VR 38:5 33:0 chr6 35958496 d_720 A . PASS END=35958587;SVTYPE=DEL;SVLEN=-91 TR:VR 14:3 20:0 chr7 43372468 d_762 A . PASS END=43374240;SVTYPE=DEL;SVLEN=-1772 TR:VR 25:7 21:0 chr8 132375286 r_326 T . PASS END=134270052;SVTYPE=DUP;SVLEN=1894766 TR:VR 60:7 27:0 chr9 136365142 d_845 T . PASS END=136365192;SVTYPE=DEL;SVLEN=-50 TR:VR 15:10 17:0 chr11 66281493 r_52_0 C [chr13:111074920[A . PASS SVTYPE=BND;MATEID=r_52_1 TR:VR 45:8 38:0 chr13 111074920 r_52_1 A [chr11:66281493[A . PASS SVTYPE=BND;MATEID=r_52_0 TR:VR 45:8 38:0 chr14 47614018 d_201 C . PASS END=47614139;SVTYPE=DEL;SVLEN=-121 TR:VR 23:8 14:0 chr17 4650651 d_362 G . PASS END=4650709;SVTYPE=DEL;SVLEN=-58 TR:VR 21:3 20:0 chr19 31230470 d_419 C . PASS END=31230754;SVTYPE=DEL;SVLEN=-284;SVINSLEN=1;SVINSSEQ=A TR:VR 16:5 20:0 chr2 169140802 r_170 C . PASS END=169258360;SVTYPE=DEL;SVLEN=-117558 TR:VR 73:10 37:0 chr2 21492146 d_441 C . PASS END=21492320;SVTYPE=DEL;SVLEN=-174 TR:VR 13:5 13:0 chr3 42510046 d_606 A . PASS END=42510095;SVTYPE=DEL;SVLEN=-49 TR:VR 16:11 17:0 chr6 39465576 r_287 G . PASS END=39518552;SVTYPE=DEL;SVLEN=-52976 TR:VR 42:4 35:0 chr8 133497018 d_826 G . PASS END=133497193;SVTYPE=DEL;SVLEN=-175 TR:VR 45:3 9:0 chr1 2356455 r_3 C . PASS END=8918912;SVTYPE=DEL;SVLEN=-6562457 TR:VR 25:9 29:0 chr11 68079902 r_53 C . PASS END=73540268;SVTYPE=DEL;SVLEN=-5460366 TR:VR 34:5 26:0 chr14 49730862 r_89 C . PASS END=50083877;SVTYPE=DUP;SVLEN=353015 TR:VR 56:8 23:0 chr14_KI270725v1_random 105436 r_104_0 A A[chr22_KI270735v1_random:30997[ . Too_low_VAF SVTYPE=BND;MATEID=r_104_1 TR:VR 103:3 71:0 chr22_KI270735v1_random 30997 r_104_1 T ]chr14_KI270725v1_random:105436]T . Too_low_VAF SVTYPE=BND;MATEID=r_104_0 TR:VR 103:3 71:0 chr17 4883206 d_363 T . PASS END=4883639;SVTYPE=DEL;SVLEN=-433 TR:VR 11:5 17:0 chr2 169332510 r_171 C . PASS END=175826890;SVTYPE=DEL;SVLEN=-6494380 TR:VR 56:9 35:0 chr2 21619402 d_442 T . PASS END=21620044;SVTYPE=DEL;SVLEN=-642 TR:VR 24:4 12:0 chr3 47554130 d_607 T . PASS END=47557979;SVTYPE=DEL;SVLEN=-3849 TR:VR 13:9 21:0 chr5 39307576 d_678 T . PASS END=39308406;SVTYPE=DEL;SVLEN=-830 TR:VR 18:4 16:0 chr6 406493 r_284 G . PASS END=43898355;SVTYPE=DEL;SVLEN=-43491862 TR:VR 41:3 21:0 chr7 4622421 r_295 C . Too_low_VAF END=4758005;SVTYPE=DEL;SVLEN=-135584 TR:VR 78:3 23:0 chr8 133609652 d_827 T . PASS END=133609781;SVTYPE=DEL;SVLEN=-129 TR:VR 51:17 17:0 chr1 241567810 r_32_0 T TCTAATATTTAGAAGC[chr8:116018492[ . PASS SVTYPE=BND;MATEID=r_32_1;SVINSLEN=15;SVINSSEQ=CTAATATTTAGAAGC TR:VR 46:11 32:0 chr8 116018492 r_32_1 A ]chr1:241567810]GCTTCTAAATATTAGA . PASS SVTYPE=BND;MATEID=r_32_0;SVINSLEN=15;SVINSSEQ=GCTTCTAAATATTAG TR:VR 46:11 32:0 chr11 68367399 d_133 T . PASS END=68367510;SVTYPE=DEL;SVLEN=-111 TR:VR 17:9 23:0 chr14 50671586 i_87 T . PASS END=50671586;SVTYPE=INS;SVINSLEN=60;SVINSSEQ=TTTTTTTTTTTTTTTTTTTTTTTTGAGACAAAGTCTTGCTGAAGAAAGTGAACCATTTGT TR:VR 22:5 22:0 chr14_KI270726v1_random 32998 r_105_0 T T[chr7:153166350[ . PASS SVTYPE=BND;MATEID=r_105_1 TR:VR 41:3 34:1 chr7 153166350 r_105_1 T ]chr14_KI270726v1_random:32998]T . PASS SVTYPE=BND;MATEID=r_105_0 TR:VR 41:3 34:1 chr2 170283493 r_172_0 T [chr2:197000380[A . PASS SVTYPE=BND;MATEID=r_172_1 TR:VR 54:8 25:0 chr2 197000380 r_172_1 A [chr2:170283493[A . PASS SVTYPE=BND;MATEID=r_172_0 TR:VR 54:8 25:0 chr2 2195522 d_436 A . PASS END=2195601;SVTYPE=DEL;SVLEN=-79 TR:VR 17:8 14:0 chr21 25157434 d_557 T . PASS END=25158080;SVTYPE=DEL;SVLEN=-646 TR:VR 22:11 18:0 chr6 41105702 d_721 T . PASS END=41105931;SVTYPE=DEL;SVLEN=-229 TR:VR 18:4 11:0 chr7 46683479 r_299_0 C [chr7:46686089[C . PASS SVTYPE=BND;MATEID=r_299_1 TR:VR 23:3 15:0 chr7 46686089 r_299_1 C [chr7:46683479[C . PASS SVTYPE=BND;MATEID=r_299_0 TR:VR 23:3 15:0 chr8 134333695 r_327 A . PASS END=134336839;SVTYPE=DEL;SVLEN=-3144 TR:VR 46:19 11:0 chr9 23407690 r_331_0 T [chr9:23579575[C . PASS SVTYPE=BND;MATEID=r_331_1 TR:VR 29:8 27:0 chr9 23579575 r_331_1 C [chr9:23407690[C . PASS SVTYPE=BND;MATEID=r_331_0 TR:VR 29:8 27:0 chr1 244848363 d_82 T . PASS END=244849572;SVTYPE=DEL;SVLEN=-1209 TR:VR 21:8 15:0 chr10 133679516 r_43_0 C [chr18:107114[C . Too_low_VAF SVTYPE=BND;MATEID=r_43_1 TR:VR 190:3 131:1 chr18 107114 r_43_1 C [chr10:133679516[C . Too_low_VAF SVTYPE=BND;MATEID=r_43_0 TR:VR 190:3 131:1 chr13 18426497 r_76_0 G ]chr2:187454249]A . PASS SVTYPE=BND;MATEID=r_76_1 TR:VR 35:5 28:0 chr2 187454249 r_76_1 A A[chr13:18426497[ . PASS SVTYPE=BND;MATEID=r_76_0 TR:VR 35:5 28:0 chr14 53449362 d_202 G . PASS END=53449553;SVTYPE=DEL;SVLEN=-191 TR:VR 21:3 17:0 chr2 172570663 r_173_0 T T]chr2:174336441] . PASS SVTYPE=BND;MATEID=r_173_1 TR:VR 44:4 33:0 chr2 174336441 r_173_1 C C]chr2:172570663] . PASS SVTYPE=BND;MATEID=r_173_0 TR:VR 44:4 33:0 chr2 22070889 d_443 A . PASS END=22074175;SVTYPE=DEL;SVLEN=-3286 TR:VR 27:4 11:0 chr21 25870776 d_558 A . PASS END=25871383;SVTYPE=DEL;SVLEN=-607 TR:VR 29:11 15:0 chr5 42952367 r_275_0 G [chr5:42956093[T . PASS SVTYPE=BND;MATEID=r_275_1 TR:VR 20:6 15:0 chr5 42956093 r_275_1 T [chr5:42952367[T . PASS SVTYPE=BND;MATEID=r_275_0 TR:VR 20:6 15:0 chr6 42740311 d_722 T . PASS END=42740387;SVTYPE=DEL;SVLEN=-76 TR:VR 23:6 13:0 chr8 13522224 d_797 T . PASS END=13522271;SVTYPE=DEL;SVLEN=-47 TR:VR 14:11 15:0 chr9 23577857 r_332_0 C C]chr9:23928437] . PASS SVTYPE=BND;MATEID=r_332_1 TR:VR 32:8 30:0 chr9 23928437 r_332_1 T T]chr9:23577857] . PASS SVTYPE=BND;MATEID=r_332_0 TR:VR 32:8 30:0 chr11 7923154 d_125 T . PASS END=7923250;SVTYPE=DEL;SVLEN=-96 TR:VR 11:7 14:0 chr14 54883356 d_203 A . PASS END=54883403;SVTYPE=DEL;SVLEN=-47 TR:VR 24:6 15:0 chr15 100390953 r_118_0 T T[chr4:180955671[ . PASS SVTYPE=BND;MATEID=r_118_1 TR:VR 58:3 23:0 chr4 180955671 r_118_1 T ]chr15:100390953]T . PASS SVTYPE=BND;MATEID=r_118_0 TR:VR 58:3 23:0 chr19 42355034 d_420 G . PASS END=42355183;SVTYPE=DEL;SVLEN=-149 TR:VR 16:7 17:0 chr2 172861120 r_174_0 G ]chr8:117534617]A . PASS SVTYPE=BND;MATEID=r_174_1 TR:VR 69:6 21:0 chr8 117534617 r_174_1 A A[chr2:172861120[ . PASS SVTYPE=BND;MATEID=r_174_0 TR:VR 69:6 21:0 chr2 22498554 d_444 T . PASS END=22500424;SVTYPE=DEL;SVLEN=-1870 TR:VR 24:5 19:0 chr22 20909589 d_586 C . PASS END=20911964;SVTYPE=DEL;SVLEN=-2375 TR:VR 19:5 14:0 chr3 6389004 i_299 A . PASS END=6389004;SVTYPE=INS;SVINSLEN=215;SVINSSEQ=CCCTGAATGAGCAGGAAGGCTGCTGTCCATGCACCACAGCATGCTCACCGGCTCATGTTGCTTTCAGGATCACACCCTGAATGAGCAGGAAGGCTGCTGTCCATACACAGCAGCACGCTCACCGGCTCATGTTGTTTGTGATCCTACTGGAATGAGCAGGAAGGCTGCTGTCCATGCACCAGCACGCTCACCTGCTCAGTTGCTTCCTGATCACC TR:VR 12:3 19:0 chr5 44142350 d_679 T . PASS END=44151867;SVTYPE=DEL;SVLEN=-9517 TR:VR 17:5 16:0 chr6 46000795 d_723 C . PASS END=46002239;SVTYPE=DEL;SVLEN=-1444 TR:VR 27:3 16:0 chr7 49711804 d_763 A . Too_small_size END=49711845;SVTYPE=DEL;SVLEN=-41 TR:VR 23:14 19:0 chr8 136004095 d_828 A . PASS END=136004322;SVTYPE=DEL;SVLEN=-227 TR:VR 18:12 19:0 chr9 23584651 r_333 A . PASS END=23920440;SVTYPE=DEL;SVLEN=-335789 TR:VR 28:7 25:0 chrX 102559852 i_471 T . PASS END=102559852;SVTYPE=INS;SVINSLEN=94;SVINSSEQ=ATAATATATTTTTATATAATATATTATAATATAATATATTTTTATATAATATATTATAATATAATATATTTTTATATAATATATTATAATATAA TR:VR 21:9 10:0 chr10 14312664 d_95 A . PASS END=14312720;SVTYPE=DEL;SVLEN=-56 TR:VR 21:17 24:0 chr11 79568623 d_134 G . PASS END=79568928;SVTYPE=DEL;SVLEN=-305 TR:VR 20:6 17:0 chr14 57618008 d_204 T . Too_small_size END=57618047;SVTYPE=DEL;SVLEN=-39 TR:VR 25:6 21:0 chr17 53656016 d_386 A . PASS END=53656328;SVTYPE=DEL;SVLEN=-312 TR:VR 17:10 16:0 chr2 173029756 r_175_0 T T]chr8:117537056] . PASS SVTYPE=BND;MATEID=r_175_1 TR:VR 68:5 33:0 chr8 117537056 r_175_1 G G]chr2:173029756] . PASS SVTYPE=BND;MATEID=r_175_0 TR:VR 68:5 33:0 chr2 230116569 d_517 T . PASS END=230119240;SVTYPE=DEL;SVLEN=-2671 TR:VR 22:10 15:0 chr21 31056996 d_559 A . Too_small_size END=31057039;SVTYPE=DEL;SVLEN=-43 TR:VR 22:5 12:0 chr3 63895966 d_609 C . Too_small_size END=63896010;SVTYPE=DEL;SVLEN=-44 TR:VR 11:9 25:0 chr6 48647001 d_724 A . PASS END=48647470;SVTYPE=DEL;SVLEN=-469 TR:VR 17:3 14:0 chr8 139387359 d_829 G . Too_small_size END=139387396;SVTYPE=DEL;SVLEN=-37 TR:VR 15:8 19:0 chr10 20079079 d_96 C . PASS END=20079145;SVTYPE=DEL;SVLEN=-66 TR:VR 21:10 15:0 chr11 79609118 r_54_0 A [chr2:177756934[G . PASS SVTYPE=BND;MATEID=r_54_1 TR:VR 34:8 30:0 chr2 177756934 r_54_1 G [chr11:79609118[G . PASS SVTYPE=BND;MATEID=r_54_0 TR:VR 34:8 30:0 chr14 58052694 d_205 T . PASS END=58052941;SVTYPE=DEL;SVLEN=-247 TR:VR 24:6 16:0 chr17 57249554 r_133 A . PASS END=57424415;SVTYPE=DUP;SVLEN=174861 TR:VR 31:7 31:0 chr19 45384534 i_195 A . PASS END=45384581;SVTYPE=INS;SVINSLEN=123;SVINSSEQ=TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCGCGCGCGCACGTGTATAATCACAAGTACAAAAGTGCTGTGAAGGAAAACTTCAAGTCACCATAAAGATTGATTATGGGCTGGGTGCAG TR:VR 19:3 15:0 chr2 173113392 r_176_0 T [chr2:174354638[A . PASS SVTYPE=BND;MATEID=r_176_1 TR:VR 42:6 29:0 chr2 174354638 r_176_1 A [chr2:173113392[A . PASS SVTYPE=BND;MATEID=r_176_0 TR:VR 42:6 29:0 chr2 90396407 i_216 A . Too_low_VAF END=90396407;SVTYPE=INS;SVINSLEN=374;SVINSSEQ=TGGAATCGAATAGAATCATTAAATGGACTTGAATGGAAACAACATCGAATGGAATCGAATTTAGTCATTGATTGGCATTGAGTGGAATCATCATTGAATGGAATCTAAGGAAATCATCGAATGGACTGGAGTGGAATCATCGAATGGACTCGAGGGGAATCATCATTGAATGGAATCTAATGGAATAATTGAATGGACTCGAATGGAATAATAGAATGGGCTTGAGTGGAATCATCATCAAATGGAATGAAATGGAATCATCAAATGGACTTGAATGGTAACAACATCGAATGGAATCGAATTTAGTCATTGAATTGCATTGAGTGGAATGATCATTGAATGGAATCTAAGGAAATCATCGAATGGACTCGAGT TR:VR 353:4 176:1 chr21 32974997 r_236_0 C C]chr21:32981102] . PASS SVTYPE=BND;MATEID=r_236_1 TR:VR 31:4 15:0 chr21 32981102 r_236_1 A A]chr21:32974997] . PASS SVTYPE=BND;MATEID=r_236_0 TR:VR 31:4 15:0 chr3 69671407 d_610 T . PASS END=69672010;SVTYPE=DEL;SVLEN=-603 TR:VR 19:14 18:0 chr7 55331510 r_300 G . PASS END=55346197;SVTYPE=DEL;SVLEN=-14687 TR:VR 36:11 23:0 chrX 143510586 d_893 C . PASS END=143510690;SVTYPE=DEL;SVLEN=-104 TR:VR 15:6 16:0 chr13 32018843 d_170 G . Too_small_size END=32018881;SVTYPE=DEL;SVLEN=-38 TR:VR 21:4 13:0 chr17 57300489 r_134 T . PASS END=57309616;SVTYPE=DUP;SVLEN=9127 TR:VR 36:6 29:0 chr2 173142545 r_177 T . PASS END=177645199;SVTYPE=DEL;SVLEN=-4502654 TR:VR 49:8 37:0 chr21 32975007 r_237_0 C [chr21:32981088[ATATGAGATTCTTCAC . PASS SVTYPE=BND;MATEID=r_237_1;SVINSLEN=15;SVINSSEQ=ATATGAGATTCTTCA TR:VR 31:3 15:0 chr21 32981088 r_237_1 C [chr21:32975007[TGAAGAATCTCATATC . PASS SVTYPE=BND;MATEID=r_237_0;SVINSLEN=15;SVINSSEQ=TGAAGAATCTCATAT TR:VR 31:3 15:0 chr3 71358421 d_611 A . PASS END=71359727;SVTYPE=DEL;SVLEN=-1306 TR:VR 14:3 14:0 chr4 49309073 d_637 A . Too_low_VAF END=49311286;SVTYPE=DEL;SVLEN=-2213 TR:VR 273:3 317:0 chrX 148936629 d_894 T . PASS END=148936739;SVTYPE=DEL;SVLEN=-110 TR:VR 7:3 13:0 chr1 248409681 d_87 G . Too_small_size END=248409726;SVTYPE=DEL;SVLEN=-45 TR:VR 13:4 18:0 chr10 25861820 d_97 A . PASS END=25862382;SVTYPE=DEL;SVLEN=-562 TR:VR 26:3 16:0 chr11 84129651 d_136 C . PASS END=84130554;SVTYPE=DEL;SVLEN=-903 TR:VR 25:6 18:0 chr13 41427204 r_77 A . PASS END=43027154;SVTYPE=DEL;SVLEN=-1599950 TR:VR 42:10 37:0 chr14 65035726 d_207 A . PASS END=65036339;SVTYPE=DEL;SVLEN=-613 TR:VR 21:5 12:0 chr16 48250472 d_345 C . PASS END=48250546;SVTYPE=DEL;SVLEN=-74 TR:VR 12:8 17:0 chr17 64782303 i_159 A . Too_small_size END=64782303;SVTYPE=INS;SVINSLEN=46;SVINSSEQ=CCCGTGAGTCTACACTTCCTCTGAGAATCTCAGTGTGTCTGAGGCC TR:VR 16:12 20:0 chr2 173791608 r_178 G . PASS END=183983706;SVTYPE=DUP;SVLEN=10192098 TR:VR 50:3 22:0 chr22 34827269 d_588 C . PASS END=34827320;SVTYPE=DEL;SVLEN=-51 TR:VR 18:5 21:0 chr3 75691285 d_612 C . PASS END=75691441;SVTYPE=DEL;SVLEN=-156 TR:VR 78:8 72:0 chr9 5153466 r_330 C . PASS END=5202823;SVTYPE=DEL;SVLEN=-49357 TR:VR 18:3 31:0 chrY 56872771 d_931 A . PASS END=56872820;SVTYPE=DEL;SVLEN=-49 TR:VR 66:5 47:0 chr11 85439174 r_55_0 T ]chr8:115158053]AAG . PASS SVTYPE=BND;MATEID=r_55_1;SVINSLEN=2;SVINSSEQ=AA TR:VR 52:4 33:0 chr8 115158053 r_55_1 G GTT[chr11:85439174[ . PASS SVTYPE=BND;MATEID=r_55_0;SVINSLEN=2;SVINSSEQ=TT TR:VR 52:4 33:0 chr13 44053641 r_78_0 C C]chr8:113032522] . PASS SVTYPE=BND;MATEID=r_78_1 TR:VR 62:10 34:0 chr8 113032522 r_78_1 A A]chr13:44053641] . PASS SVTYPE=BND;MATEID=r_78_0 TR:VR 62:10 34:0 chr14 72948781 i_88 T . PASS END=72948782;SVTYPE=INS;SVINSLEN=148;SVINSSEQ=GTTTATTTTTAATCAAATGTGTGTGGGGAACAAAGCAGTCGCTCCATCTACTTCCTGTTGGAAGGAATGCTGGGCAGTAATAAATTAGACGGCCCCACCCTCCCAGGGCACACAGGGGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAA TR:VR 15:3 10:0 chr15 20293174 r_106_0 T [chr7:148373053[T . PASS SVTYPE=BND;MATEID=r_106_1 TR:VR 40:4 42:0 chr7 148373053 r_106_1 T [chr15:20293174[T . PASS SVTYPE=BND;MATEID=r_106_0 TR:VR 40:4 42:0 chr16 52549154 r_122 A . PASS END=52691451;SVTYPE=DUP;SVLEN=142297 TR:VR 37:7 40:0 chr17 64782346 i_160 G . Too_small_size END=64782346;SVTYPE=INS;SVINSLEN=46;SVINSSEQ=GCCCCGTGAGTCTACACTTCCTCTGAGAATCTCAGTGTGTCTGGAG TR:VR 16:12 20:0 chr19 50915467 d_421 A . PASS END=50919395;SVTYPE=DEL;SVLEN=-3928 TR:VR 17:4 20:0 chr2 173793567 r_179_0 C CT]chr2:184065701] . Too_low_VAF SVTYPE=BND;MATEID=r_179_1;SVINSLEN=1;SVINSSEQ=T TR:VR 64:3 24:0 chr2 184065701 r_179_1 T TA]chr2:173793567] . Too_low_VAF SVTYPE=BND;MATEID=r_179_0;SVINSLEN=1;SVINSSEQ=A TR:VR 64:3 24:0 chr3 77096779 d_613 C . PASS END=77097003;SVTYPE=DEL;SVLEN=-224 TR:VR 18:12 15:0 chr8 143567650 d_830 C . Too_small_size END=143567689;SVTYPE=DEL;SVLEN=-39 TR:VR 12:3 15:0 chr10 28172465 d_99 T . Too_small_size END=28172503;SVTYPE=DEL;SVLEN=-38 TR:VR 18:3 21:0 chr11 86510288 r_56_0 C CA[chr8:115151543[ . PASS SVTYPE=BND;MATEID=r_56_1;SVINSLEN=1;SVINSSEQ=A TR:VR 48:3 32:0 chr8 115151543 r_56_1 T ]chr11:86510288]TT . PASS SVTYPE=BND;MATEID=r_56_0;SVINSLEN=1;SVINSSEQ=T TR:VR 48:3 32:0 chr14 75169200 d_208 T . Too_small_size END=75169235;SVTYPE=DEL;SVLEN=-35 TR:VR 10:4 14:0 chr15 22434974 d_302 T . PASS END=22435029;SVTYPE=DEL;SVLEN=-55 TR:VR 21:3 18:0 chr16 54174012 r_123 T . PASS END=54363249;SVTYPE=DUP;SVLEN=189237 TR:VR 33:4 26:0 chr2 174377997 r_180_0 C C]chr2:177113262] . PASS SVTYPE=BND;MATEID=r_180_1 TR:VR 43:8 33:0 chr2 177113262 r_180_1 A A]chr2:174377997] . PASS SVTYPE=BND;MATEID=r_180_0 TR:VR 43:8 33:0 chr3 82660488 d_614 T . PASS END=82660969;SVTYPE=DEL;SVLEN=-481 TR:VR 14:4 16:0 chr6 62571573 d_727 G . Too_small_size END=62571611;SVTYPE=DEL;SVLEN=-38 TR:VR 23:8 16:0 chr7 56675034 r_301_0 T [chr7:57484763[GG . PASS SVTYPE=BND;MATEID=r_301_1;SVINSLEN=1;SVINSSEQ=G TR:VR 39:4 27:0 chr7 57484763 r_301_1 G [chr7:56675034[CG . PASS SVTYPE=BND;MATEID=r_301_0;SVINSLEN=1;SVINSSEQ=C TR:VR 39:4 27:0 chr8 144074713 r_328 G . PASS END=144176648;SVTYPE=DUP;SVLEN=101935 TR:VR 33:10 25:0 chr9 68817371 d_834 C . PASS END=68817470;SVTYPE=DEL;SVLEN=-99 TR:VR 16:11 11:0 chr1 28460248 r_11 A . PASS END=28575298;SVTYPE=DUP;SVLEN=115050 TR:VR 41:5 25:0 chr10 3057357 r_33 C . PASS END=3063648;SVTYPE=DEL;SVLEN=-6291;SVINSLEN=1;SVINSSEQ=C TR:VR 25:4 26:0 chr11 88711905 d_137 A . Too_small_size END=88711948;SVTYPE=DEL;SVLEN=-43 TR:VR 21:6 11:0 chr13 47857490 d_171 T . PASS END=47866150;SVTYPE=DEL;SVLEN=-8660 TR:VR 28:6 31:0 chr14 75361908 r_90 G . PASS END=75383468;SVTYPE=DUP;SVLEN=21560 TR:VR 32:6 23:0 chr16 56512099 d_346 G . PASS END=56513892;SVTYPE=DEL;SVLEN=-1793 TR:VR 18:12 17:0 chr19 54096353 i_197 T . PASS END=54096353;SVTYPE=INS;SVINSLEN=274;SVINSSEQ=CTCTCTCTGCCTCCCTCTCTCTCTCTCTGCCTCTCTCTCTCTGCCTCCCTCTCTCTCTGCCTCCCTCTCTCTCTGCCTCCCTCTCTCTCTGCCTGCCTCTCTCTCTGCCTGCCTCTCTCTCTGCCTCCCTCTCTCTGCCTCCCTCTCTCTCTGCCTCCCTCTCTCTCTGCCTCCCTCTCTCTCTGCCTCCCTCTCTCTCTGCCTCCCTCTCTCTCTGCCTCCCCTCTCTCTCTCTGCCTGCCTCTCTCTCTGCCTGCCTCTCTCTCTGCCTCCC TR:VR 18:4 16:0 chr2 174408276 r_181_0 T [chr2:177862416[T . PASS SVTYPE=BND;MATEID=r_181_1 TR:VR 43:3 28:0 chr2 177862416 r_181_1 T [chr2:174408276[T . PASS SVTYPE=BND;MATEID=r_181_0 TR:VR 43:3 28:0 chr22 39891575 d_589 G . PASS END=39891642;SVTYPE=DEL;SVLEN=-67 TR:VR 17:6 19:0 chr3 8308520 d_602 A . PASS END=8308611;SVTYPE=DEL;SVLEN=-91 TR:VR 17:10 14:0 chr9 68819787 d_835 T . Too_small_size END=68819830;SVTYPE=DEL;SVLEN=-43 TR:VR 15:10 9:0 chr1 35105992 d_3 A . PASS END=35106954;SVTYPE=DEL;SVLEN=-962 TR:VR 16:3 15:0 chr11 91555853 d_138 C . PASS END=91555916;SVTYPE=DEL;SVLEN=-63 TR:VR 23:12 11:0 chr13 48393465 d_172 G . PASS END=48393957;SVTYPE=DEL;SVLEN=-492 TR:VR 13:3 23:0 chr14 75377040 r_91_0 T [chr14:75383466[G . PASS SVTYPE=BND;MATEID=r_91_1 TR:VR 29:10 18:0 chr14 75383466 r_91_1 G [chr14:75377040[G . PASS SVTYPE=BND;MATEID=r_91_0 TR:VR 29:10 18:0 chr16 59977097 r_124_0 C C]chr16:59985285] . PASS SVTYPE=BND;MATEID=r_124_1 TR:VR 15:5 21:0 chr16 59985285 r_124_1 A A]chr16:59977097] . PASS SVTYPE=BND;MATEID=r_124_0 TR:VR 15:5 21:0 chr2 174995403 r_182 A . PASS END=194733848;SVTYPE=DUP;SVLEN=19738445 TR:VR 54:5 29:0 chr3 85252991 r_246 T . PASS END=94266490;SVTYPE=DUP;SVLEN=9013499;SVINSLEN=1;SVINSSEQ=A TR:VR 35:4 37:0 chr6 64851419 r_288_0 T T[chr8:37420268[ . PASS SVTYPE=BND;MATEID=r_288_1 TR:VR 29:9 42:0 chr8 37420268 r_288_1 T ]chr6:64851419]T . PASS SVTYPE=BND;MATEID=r_288_0 TR:VR 29:9 42:0 chr8 144336661 r_329 G . PASS END=144394927;SVTYPE=DUP;SVLEN=58266 TR:VR 40:14 27:0 chr9 72463042 d_836 G . Too_small_size END=72463087;SVTYPE=DEL;SVLEN=-45 TR:VR 16:3 15:0 chr1 37356989 d_4 T . PASS END=37357165;SVTYPE=DEL;SVLEN=-176 TR:VR 15:6 15:0 chr11 96472455 d_139 A . PASS END=96472562;SVTYPE=DEL;SVLEN=-107 TR:VR 23:4 14:0 chr14_GL000225v1_random 39304 d_234 C . Too_low_VAF END=40403;SVTYPE=DEL;SVLEN=-1099;SVINSLEN=7;SVINSSEQ=AAGCGTT TR:VR 573:5 374:1 chr16 59977113 r_125_0 A [chr16:59985290[G . PASS SVTYPE=BND;MATEID=r_125_1 TR:VR 15:4 21:0 chr16 59985290 r_125_1 G [chr16:59977113[G . PASS SVTYPE=BND;MATEID=r_125_0 TR:VR 15:4 21:0 chr17 852192 d_357 T . PASS END=852874;SVTYPE=DEL;SVLEN=-682 TR:VR 10:4 15:0 chr19 54846758 d_424 G . PASS END=54846886;SVTYPE=DEL;SVLEN=-128;SVINSLEN=2;SVINSSEQ=TG TR:VR 22:3 11:0 chr2 175001916 r_183 C . PASS END=181528191;SVTYPE=DEL;SVLEN=-6526275 TR:VR 48:5 28:0 chr3 85465636 r_247_0 T [chr7:146667926[AC . PASS SVTYPE=BND;MATEID=r_247_1;SVINSLEN=1;SVINSSEQ=A TR:VR 32:4 36:0 chr7 146667926 r_247_1 C [chr3:85465636[TC . PASS SVTYPE=BND;MATEID=r_247_0;SVINSLEN=1;SVINSSEQ=T TR:VR 32:4 36:0 chr6 77882822 r_289 T . PASS END=77890326;SVTYPE=DEL;SVLEN=-7504 TR:VR 34:14 25:0 chr9 81216278 d_837 G . PASS END=81216336;SVTYPE=DEL;SVLEN=-58 TR:VR 14:6 13:0 chr1 38795848 d_5 C . PASS END=38795895;SVTYPE=DEL;SVLEN=-47 TR:VR 22:12 21:0 chr10 34000644 r_34_0 A ]chr9:93946482]T . PASS SVTYPE=BND;MATEID=r_34_1 TR:VR 34:13 39:0 chr9 93946482 r_34_1 T T[chr10:34000644[ . PASS SVTYPE=BND;MATEID=r_34_0 TR:VR 34:13 39:0 chr13 54881821 d_173 T . PASS END=54881892;SVTYPE=DEL;SVLEN=-71;SVINSLEN=1;SVINSSEQ=A TR:VR 18:5 27:0 chr14 78206893 d_209 T . PASS END=78207048;SVTYPE=DEL;SVLEN=-155 TR:VR 21:4 12:0 chr16 67765244 r_126 T . PASS END=67866824;SVTYPE=DUP;SVLEN=101580 TR:VR 40:5 31:0 chr2 175003942 r_184_0 C [chr2:195821471[CC . PASS SVTYPE=BND;MATEID=r_184_1;SVINSLEN=1;SVINSSEQ=C TR:VR 56:7 27:0 chr2 195821471 r_184_1 C [chr2:175003942[GC . PASS SVTYPE=BND;MATEID=r_184_0;SVINSLEN=1;SVINSSEQ=G TR:VR 56:7 27:0 chr22 43181326 d_591 C . Too_small_size END=43181361;SVTYPE=DEL;SVLEN=-35 TR:VR 14:6 8:0 chr3 85472545 r_248 C . PASS END=111773577;SVTYPE=DEL;SVLEN=-26301032;SVINSLEN=23;SVINSSEQ=CAAAGTATCATGTATTTGGTGGT TR:VR 40:4 29:0 chr5 54622914 r_276_0 T [chr5:54832008[A . PASS SVTYPE=BND;MATEID=r_276_1 TR:VR 41:5 41:0 chr5 54832008 r_276_1 A [chr5:54622914[A . PASS SVTYPE=BND;MATEID=r_276_0 TR:VR 41:5 41:0 chr9 93272177 d_838 G . PASS END=93272603;SVTYPE=DEL;SVLEN=-426 TR:VR 25:8 13:0 chr1 40466637 d_6 G . PASS END=40466804;SVTYPE=DEL;SVLEN=-167;SVINSLEN=5;SVINSSEQ=TAATA TR:VR 17:5 19:0 chr10 35182696 d_100 G . PASS END=35183454;SVTYPE=DEL;SVLEN=-758 TR:VR 29:13 29:0 chr12 121557255 d_161 T . PASS END=121558168;SVTYPE=DEL;SVLEN=-913;SVINSLEN=5;SVINSSEQ=TTTTT TR:VR 12:6 16:0 chr13 60212855 r_80_0 C [chr3:84987630[AA . PASS SVTYPE=BND;MATEID=r_80_1;SVINSLEN=1;SVINSSEQ=A TR:VR 37:3 27:0 chr3 84987630 r_80_1 A [chr13:60212855[TA . PASS SVTYPE=BND;MATEID=r_80_0;SVINSLEN=1;SVINSSEQ=T TR:VR 37:3 27:0 chr15 34895326 d_304 A . PASS END=34895385;SVTYPE=DEL;SVLEN=-59 TR:VR 16:6 11:0 chr16 70406785 i_142 A . PASS END=70406816;SVTYPE=INS;SVINSLEN=176;SVINSSEQ=CAACCCCTCCCCCAAAAAAGTCACCTGGATGAGGCCAGGCGCGGTGGCTCATGCCTGTAATCCCAACACTTTGGGAGGCTGAGGCGGGCGGATCACGAGGTTAGGAAATCGAGACCATCATGGCTAACATGGTGAAACCCCGTCTCTACTAAAAATACACAAAATTAGCCGGGCGT TR:VR 27:8 11:0 chr2 175033058 r_185 A . PASS END=177127182;SVTYPE=DEL;SVLEN=-2094124 TR:VR 59:11 28:0 chr2 29148434 r_149 G . PASS END=29188700;SVTYPE=DEL;SVLEN=-40266 TR:VR 30:14 38:0 chr3 86490542 r_249 A . PASS END=86524974;SVTYPE=DUP;SVLEN=34432;SVINSLEN=9;SVINSSEQ=TTATACATT TR:VR 38:5 26:0 chr5 54712721 r_277_0 T T]chr5:54831998] . PASS SVTYPE=BND;MATEID=r_277_1 TR:VR 48:6 39:0 chr5 54831998 r_277_1 C C]chr5:54712721] . PASS SVTYPE=BND;MATEID=r_277_0 TR:VR 48:6 39:0 chr6 88586479 d_729 A . PASS END=88586785;SVTYPE=DEL;SVLEN=-306;SVINSLEN=1;SVINSSEQ=G TR:VR 13:5 10:0 chr8 144686882 i_432 A . PASS END=144686882;SVTYPE=INS;SVINSLEN=1896;SVINSSEQ=CATTTACAGTGAACACTTCCCACCCCGTGACCACACACTGGCGGTGAGCACTTCCCACCCCGTGACCACACATTTACAGTGAACACTTCCACCCCGTGACCACACACTGGCGGTGAGTACTTCCCACCCCCGTGACCACTCATTTACAGCGAGCACTTCTCACCCCCGTGACCACGCACTGGCGGCAGAGCACTTCCCACCCCTGTGACCACTCATTTACAGCGAGCACTTCCCACCCCGTGACCACACACTGGCGGTGAGCACTTCTACCCCACCCCGTGACCACGCACTGGCGGCGAGCACTTCCCACCCCCGTGACCACTCGTTTACAGCGAGCACTTCCCACCGTGACCACACACTGGCGGCGAGCTGCTTCCCCACCCCCGTGACCACACACTGGCGGCGAGCACTTCCCACCCCCGTGACCACACACTAGCGGCGAGCACTTCCCACCCCCGTGACCACTCATTTACAGCGAGCACTTCTCACCCCCGTGACCACGCACTGGCGGCGAGCACTTCCCCACCCCGTGACCACACACTGGCGGTGAGCACTTCCCACCCCGTGACCACACACACTGGCGGCGAGCACTTCCCACCCCCGTGACCACACGCCTGGCGGTGAGCACTTCCCACCCCGTGACCACACACTAGCGGCGAGCACTTCCCACCCCCCGTGACCACTCATTTACAGCGAGCACTTCTCACCCCCCGTGACCACGCACTGGCGGCGAACACTTCCCACCCCGTGACCACACACTGGCGGTGAGCACTTCCCCACCCCCGTGACCACTCATTCCCAGCGAGCACTTCTCCACCCCCGTGACCACGCACTGGCGACAGGCACTTCCCACCCCCGTGACCACACATTTACAGTGAACACTTCCCACCCCGTGACCACACACTGGCGGTGAGCACTTCCCACCCCGTGACCACACATTTTACGGAGCAGCCCCCCCCCCGTGACCACACACTAGCGGTGAGCACTTCCCACCCCCGTGACCACACACTGGCGGTGAGCACTTCCCACCCCCGTGACCACACACTGGCGGTGAGCACTTCCCACCCCGTGACCACACATTTACAGCGAGCACTTCCCACCCCCGTGACCACGCACTGGCGGCGAGCACTTCCCACCCCGTGACCACACACTGGCGGCGAGCACTTCCCACCCCGTGACCACACACTGGCGGTGAGCACTTCCCACCCCGTGACCACGCACTGGCGGCGAGCACTTCCCACCCCGTGACCACTCATTTACAGCGAGCGCCCCCACCCCGTGACCACACACACTGGCGGCGAGCACTTCCCACCCCGTGACCACACACTGGCGGCTGAGCACTTCCCACCCCCGTGACCACACACTAGCAGCGAGCACTTCCCACCCCCGTGACCACTCATTTACAGCGAGCACTTCCCACCCCCGTGACCACGCACTGGCGGTGAGCACTTCCCACCCCGTGACCACACACTGGCGGTGAGCACTTCCCACCCGTGACCACACACTGGCGGTGAGCACTTCCACCCCCCGTGACCACACACTGGCGGTGAGCACTTCCCCACCCCGTGACCACACACTAGCGGCGAGCACTTCCCACCCCCGTGACCACACTGGCAGCGACCATTTCCACCCCCGTGACGACGCACTGGCAGCAGGAAACTCACCCCGTGACCACGCACTGGCGGCGAGCACTTCCCACCCCCGTGACCACACACTAGCGGCGACCACTTCCCACCCCCGTGACCACTCATTTACAGCCGAGCGCTTCTCACCCCCGTGACCACGCACTGGCGGCGAGCACTTCCCACCCCCGTGACCACTCATTTACAGCGAGCCGCTTCCCACCCCCGTGACCACGCACTGGCGGCGAGCACTTGCCCACCCCCGTGACCACGC TR:VR 18:9 11:0 chr1 40541114 r_12_0 A [chr11:66649595[T . PASS SVTYPE=BND;MATEID=r_12_1 TR:VR 43:6 41:0 chr11 66649595 r_12_1 T [chr1:40541114[T . PASS SVTYPE=BND;MATEID=r_12_0 TR:VR 43:6 41:0 chr10 35657594 r_35_0 A A[chr9:92141544[ . PASS SVTYPE=BND;MATEID=r_35_1 TR:VR 50:13 25:0 chr9 92141544 r_35_1 C ]chr10:35657594]C . PASS SVTYPE=BND;MATEID=r_35_0 TR:VR 50:13 25:0 chr12 122068234 r_70_0 G [chr17:64250217[T . PASS SVTYPE=BND;MATEID=r_70_1 TR:VR 41:8 40:0 chr17 64250217 r_70_1 T [chr12:122068234[T . PASS SVTYPE=BND;MATEID=r_70_0 TR:VR 41:8 40:0 chr14 80380447 r_92_0 G [chr14:80708488[GTGTATAT . PASS SVTYPE=BND;MATEID=r_92_1;SVINSLEN=7;SVINSSEQ=GTGTATA TR:VR 37:3 27:0 chr14 80708488 r_92_1 T [chr14:80380447[TATACACT . PASS SVTYPE=BND;MATEID=r_92_0;SVINSLEN=7;SVINSSEQ=TATACAC TR:VR 37:3 27:0 chr2 175034074 r_186_0 C [chr2:177665086[T . PASS SVTYPE=BND;MATEID=r_186_1 TR:VR 63:9 30:0 chr2 177665086 r_186_1 T [chr2:175034074[T . PASS SVTYPE=BND;MATEID=r_186_0 TR:VR 63:9 30:0 chr5 54768098 r_278 C . PASS END=54832817;SVTYPE=DUP;SVLEN=64719;SVINSLEN=6;SVINSSEQ=GAAGTA TR:VR 44:5 37:0 chr6 91472847 r_290_0 A [chr8:42053774[A . PASS SVTYPE=BND;MATEID=r_290_1 TR:VR 47:6 23:0 chr8 42053774 r_290_1 A [chr6:91472847[A . PASS SVTYPE=BND;MATEID=r_290_0 TR:VR 47:6 23:0 chr8 1626599 d_796 T . PASS END=1626587;SVTYPE=INS;SVINSLEN=156;SVINSSEQ=GGGTGTGGGTTGGACGGCTGTTCCCATCTCTACCCTGCAGCGGGTGCTCACCCTCTGGGTGTGGGTTGGACGGCTGTTCCCATCTGTACCCTGTGGTGGGTGCTCAGCCTCTGGGTGTGGGTTGGACGGTCGTTCCCATCTCTACCCTGCAGCAGG TR:VR 10:6 18:0 chr1 40726568 d_7 C . PASS END=40727382;SVTYPE=DEL;SVLEN=-814 TR:VR 25:11 12:0 chr12 122126716 r_71_0 A A]chr17:64369727] . PASS SVTYPE=BND;MATEID=r_71_1 TR:VR 43:12 24:0 chr17 64369727 r_71_1 C C]chr12:122126716] . PASS SVTYPE=BND;MATEID=r_71_0 TR:VR 43:12 24:0 chr13 61344228 d_174 A . PASS END=61345455;SVTYPE=DEL;SVLEN=-1227;SVINSLEN=1;SVINSSEQ=T TR:VR 24:7 17:0 chr14 80681955 r_93_0 A A]chr22:12624547] . Too_low_VAF SVTYPE=BND;MATEID=r_93_1 TR:VR 85:3 41:0 chr22 12624547 r_93_1 C C]chr14:80681955] . Too_low_VAF SVTYPE=BND;MATEID=r_93_0 TR:VR 85:3 41:0 chr15 40212479 d_305 T . PASS END=40212562;SVTYPE=DEL;SVLEN=-83 TR:VR 27:16 17:0 chr2 175034416 r_187_0 C C]chr2:177127618] . PASS SVTYPE=BND;MATEID=r_187_1 TR:VR 60:10 29:0 chr2 177127618 r_187_1 G G]chr2:175034416] . PASS SVTYPE=BND;MATEID=r_187_0 TR:VR 60:10 29:0 chr22 43705326 d_592 A . PASS END=43705537;SVTYPE=DEL;SVLEN=-211 TR:VR 15:5 18:0 chr3 89659115 r_250 A . PASS END=89703757;SVTYPE=DEL;SVLEN=-44642 TR:VR 27:12 24:0 chr6 99430598 r_291 A . PASS END=99436337;SVTYPE=DUP;SVLEN=5739 TR:VR 27:3 23:0 chr8 24075089 i_403 A . PASS END=24075111;SVTYPE=INS;SVINSLEN=153;SVINSSEQ=AGGGAAGATTCTTGTGATAAGCCCAATAACAAGTAAGAAAGCAATTTTTTATACATAGATCTAGAACAAAAAGGGCTCATGATGAAGAATATTTTATTGAAGCTTAGTGTATTGCTATTTTTCATAAATTGCTGTTTTTGCCTATCCCACAAT TR:VR 11:7 20:0 chr1 41381312 r_13 G . PASS END=41796702;SVTYPE=DUP;SVLEN=415390 TR:VR 35:4 36:0 chr12 122462063 r_72_0 C [chr3:171832258[T . PASS SVTYPE=BND;MATEID=r_72_1 TR:VR 39:4 29:0 chr3 171832258 r_72_1 T [chr12:122462063[T . PASS SVTYPE=BND;MATEID=r_72_0 TR:VR 39:4 29:0 chr13 61735422 r_81_0 T T[chr7:1201625[ . PASS SVTYPE=BND;MATEID=r_81_1 TR:VR 60:7 28:0 chr7 1201625 r_81_1 T ]chr13:61735422]T . PASS SVTYPE=BND;MATEID=r_81_0 TR:VR 60:7 28:0 chr14_GL000225v1_random 40870 d_238 C . Too_low_VAF END=41238;SVTYPE=DEL;SVLEN=-368;SVINSLEN=29;SVINSSEQ=CCTGAGAAAGAGTGCCATCACCTGGTTGA TR:VR 565:4 364:0 chr15 42463102 d_306 C . PASS END=42463198;SVTYPE=DEL;SVLEN=-96 TR:VR 21:5 12:0 chr16 81788360 d_347 A . PASS END=81788409;SVTYPE=DEL;SVLEN=-49 TR:VR 19:7 11:0 chr19 57348939 d_426 G . PASS END=57349170;SVTYPE=DEL;SVLEN=-231 TR:VR 13:5 11:0 chr2 175095589 r_188_0 T [chr2:196160180[C . PASS SVTYPE=BND;MATEID=r_188_1 TR:VR 53:10 31:0 chr2 196160180 r_188_1 C [chr2:175095589[C . PASS SVTYPE=BND;MATEID=r_188_0 TR:VR 53:10 31:0 chr5 65652593 r_279_0 T T]chr5:135403021] . PASS SVTYPE=BND;MATEID=r_279_1 TR:VR 38:10 35:0 chr5 135403021 r_279_1 T T]chr5:65652593] . PASS SVTYPE=BND;MATEID=r_279_0 TR:VR 38:10 35:0 chr8 34237630 d_798 T . PASS END=34237730;SVTYPE=DEL;SVLEN=-100 TR:VR 13:4 12:0 chrX 44858600 d_888 A . PASS END=44863791;SVTYPE=DEL;SVLEN=-5191 TR:VR 15:6 22:0 chr1 42102993 r_14_0 T ]chr11:66305503]T . PASS SVTYPE=BND;MATEID=r_14_1 TR:VR 51:7 42:0 chr11 66305503 r_14_1 T T[chr1:42102993[ . PASS SVTYPE=BND;MATEID=r_14_0 TR:VR 51:7 42:0 chr13 61747909 r_82_0 G ]chr20:32361342]T . PASS SVTYPE=BND;MATEID=r_82_1 TR:VR 32:3 38:0 chr20 32361342 r_82_1 T T[chr13:61747909[ . PASS SVTYPE=BND;MATEID=r_82_0 TR:VR 32:3 38:0 chr14 88792954 d_211 A . PASS END=88793019;SVTYPE=DEL;SVLEN=-65 TR:VR 29:5 7:0 chr15 42847433 d_307 C . PASS END=42847509;SVTYPE=DEL;SVLEN=-76 TR:VR 20:12 18:0 chr2 175490711 r_189 T . Too_low_VAF END=175815565;SVTYPE=DUP;SVLEN=324854 TR:VR 65:3 30:0 chr22 48568064 r_241_0 A [chr22:48571377[T . PASS SVTYPE=BND;MATEID=r_241_1 TR:VR 28:6 24:0 chr22 48571377 r_241_1 T [chr22:48568064[T . PASS SVTYPE=BND;MATEID=r_241_0 TR:VR 28:6 24:0 chr5 65791085 d_687 T . PASS END=65798176;SVTYPE=DEL;SVLEN=-7091 TR:VR 18:3 20:0 chr8 42306534 r_305_0 T T]chr8:43408295] . PASS SVTYPE=BND;MATEID=r_305_1 TR:VR 41:19 33:0 chr8 43408295 r_305_1 G G]chr8:42306534] . PASS SVTYPE=BND;MATEID=r_305_0 TR:VR 41:19 33:0 chr1 43505994 d_8 C . PASS END=43506118;SVTYPE=DEL;SVLEN=-124 TR:VR 27:7 13:0 chr12 122692167 d_162 A . PASS END=122692315;SVTYPE=DEL;SVLEN=-148 TR:VR 13:8 15:0 chr13 62660126 d_175 A . PASS END=62660247;SVTYPE=DEL;SVLEN=-121 TR:VR 15:7 21:0 chr16 85369135 r_129 G . PASS END=85531376;SVTYPE=DUP;SVLEN=162241 TR:VR 38:7 30:0 chr2 175650325 d_511 A . PASS END=175651618;SVTYPE=DEL;SVLEN=-1293 TR:VR 28:3 16:0 chr22 48568610 r_242_0 T T]chr22:48617565] . PASS SVTYPE=BND;MATEID=r_242_1 TR:VR 37:5 32:0 chr22 48617565 r_242_1 C C]chr22:48568610] . PASS SVTYPE=BND;MATEID=r_242_0 TR:VR 37:5 32:0 chr5 69124167 d_688 A . Too_small_size END=69124206;SVTYPE=DEL;SVLEN=-39 TR:VR 19:13 17:0 chrX 49777629 d_889 G . PASS END=49777741;SVTYPE=DEL;SVLEN=-112 TR:VR 16:12 16:0 chr1 44033549 r_15 T . PASS END=44040928;SVTYPE=DUP;SVLEN=7379 TR:VR 30:5 19:0 chr12 125440798 r_74_0 C C[chr20:43050484[ . PASS SVTYPE=BND;MATEID=r_74_1 TR:VR 35:11 28:0 chr20 43050484 r_74_1 T ]chr12:125440798]T . PASS SVTYPE=BND;MATEID=r_74_0 TR:VR 35:11 28:0 chr15 48952460 r_108 G . PASS END=48986285;SVTYPE=DUP;SVLEN=33825 TR:VR 41:5 30:0 chr22 48617211 r_243_0 C [chr22:48618545[CT . PASS SVTYPE=BND;MATEID=r_243_1;SVINSLEN=1;SVINSSEQ=C TR:VR 21:5 13:0 chr22 48618545 r_243_1 T [chr22:48617211[GT . PASS SVTYPE=BND;MATEID=r_243_0;SVINSLEN=1;SVINSSEQ=G TR:VR 21:5 13:0 chr3 90618456 r_251_0 A A]chr3:94281285] . PASS SVTYPE=BND;MATEID=r_251_1 TR:VR 47:3 45:0 chr3 94281285 r_251_1 A A]chr3:90618456] . PASS SVTYPE=BND;MATEID=r_251_0 TR:VR 47:3 45:0 chr5 69625503 d_689 C . PASS END=69625556;SVTYPE=DEL;SVLEN=-53;SVINSLEN=9;SVINSSEQ=GCCTGGCCA TR:VR 35:14 27:0 chr7 63078299 d_776 G . PASS END=63081484;SVTYPE=DEL;SVLEN=-3185 TR:VR 27:10 17:0 chr1 47049587 r_16_0 A ]chr5:34269142]T . PASS SVTYPE=BND;MATEID=r_16_1 TR:VR 57:6 38:0 chr5 34269142 r_16_1 T T[chr1:47049587[ . PASS SVTYPE=BND;MATEID=r_16_0 TR:VR 57:6 38:0 chr12 125440804 r_75_0 A ]chr20:43050473]TAGG . PASS SVTYPE=BND;MATEID=r_75_1;SVINSLEN=3;SVINSSEQ=TAG TR:VR 35:7 28:0 chr20 43050473 r_75_1 G GCTA[chr12:125440804[ . PASS SVTYPE=BND;MATEID=r_75_0;SVINSLEN=3;SVINSSEQ=CTA TR:VR 35:7 28:0 chr13 66368250 i_65 A . PASS END=66368278;SVTYPE=INS;SVINSLEN=352;SVINSSEQ=AGGAATCAACCTCTAGGGCAAACCAGATTATTATTAAAAGTTGAATATAACCAACAGGTACAAAGTTACATTTAAACAGGAGAAATTTAGTTCTATTGCACAGTAGGGTGACTATAGTTAACAATAATGTATTGTACAATTAAAAATAGCTAGGAGAGAGGATTCTGCATCTTATTGCTACAAAGAAATGATAAATGTTTGAGGTGATATATCTGCTAATTACTCTGATTTCCAACTGTTACACAATGTATCAAAACGTCACATTGTATCCCATAAATATGTACAATTATTGCATCAGTGAAAAAAAAAACGTGTATAATCATTGAATACTACATGGCTGATCTCTGCATGT TR:VR 17:3 20:0 chr15 49050761 r_109_0 A ]chr5:52531092]CC . PASS SVTYPE=BND;MATEID=r_109_1;SVINSLEN=1;SVINSSEQ=C TR:VR 32:3 38:0 chr5 52531092 r_109_1 C CG[chr15:49050761[ . PASS SVTYPE=BND;MATEID=r_109_0;SVINSLEN=1;SVINSSEQ=G TR:VR 32:3 38:0 chr2 177020502 r_190 A . PASS END=194762396;SVTYPE=DEL;SVLEN=-17741894 TR:VR 58:14 35:0 chr2 43305240 d_446 A . PASS END=43305317;SVTYPE=DEL;SVLEN=-77 TR:VR 15:3 13:0 chr22 49327685 d_594 C . PASS END=49328018;SVTYPE=DEL;SVLEN=-333 TR:VR 18:4 18:0 chr4 70527017 d_648 G . PASS END=70527075;SVTYPE=DEL;SVLEN=-58 TR:VR 12:6 10:0 chr5 74358951 d_690 A . PASS END=74373998;SVTYPE=DEL;SVLEN=-15047 TR:VR 28:6 24:0 chr1 47049940 r_17_0 A A[chr5:34216565[ . PASS SVTYPE=BND;MATEID=r_17_1 TR:VR 57:4 47:0 chr5 34216565 r_17_1 C ]chr1:47049940]C . PASS SVTYPE=BND;MATEID=r_17_0 TR:VR 57:4 47:0 chr13 67519943 d_176 G . PASS END=67520003;SVTYPE=DEL;SVLEN=-60 TR:VR 26:5 14:0 chr15 53874951 d_308 G . PASS END=53879682;SVTYPE=DEL;SVLEN=-4731 TR:VR 26:6 12:0 chr2 177021209 r_191_0 T [chr2:177022519[T . PASS SVTYPE=BND;MATEID=r_191_1 TR:VR 42:10 18:0 chr2 177022519 r_191_1 T [chr2:177021209[T . PASS SVTYPE=BND;MATEID=r_191_0 TR:VR 42:10 18:0 chr2 45378984 d_447 C . PASS END=45379040;SVTYPE=DEL;SVLEN=-56 TR:VR 14:5 13:0 chr4 85239638 d_649 T . PASS END=85239690;SVTYPE=DEL;SVLEN=-52 TR:VR 15:5 15:0 chr5 79848376 d_691 T . Too_small_size END=79848412;SVTYPE=DEL;SVLEN=-36 TR:VR 20:4 16:0 chr7 6652293 r_296 T . Too_low_VAF END=6693421;SVTYPE=DEL;SVLEN=-41128 TR:VR 61:3 24:0 chrUn_GL000216v2 98581 d_846 A . Too_small_size END=98616;SVTYPE=DEL;SVLEN=-35 TR:VR 78:5 102:0 chrX 54635891 d_890 G . PASS END=54636004;SVTYPE=DEL;SVLEN=-113 TR:VR 10:4 15:0 chr1 48359214 r_18_0 G G[chr18:55289410[ . PASS SVTYPE=BND;MATEID=r_18_1 TR:VR 54:4 37:0 chr18 55289410 r_18_1 C ]chr1:48359214]C . PASS SVTYPE=BND;MATEID=r_18_0 TR:VR 54:4 37:0 chr15 56812576 r_110 A . PASS END=56861152;SVTYPE=DUP;SVLEN=48576 TR:VR 51:7 31:0 chr2 177021907 r_192_0 C C]chr2:177665539] . PASS SVTYPE=BND;MATEID=r_192_1 TR:VR 52:11 35:0 chr2 177665539 r_192_1 A A]chr2:177021907] . PASS SVTYPE=BND;MATEID=r_192_0 TR:VR 52:11 35:0 chr4 85239904 i_319 G . Too_small_size END=85239904;SVTYPE=INS;SVINSLEN=45;SVINSSEQ=CCAATATCCCTAATGAACATTGATGCAAAAATCCTCAATAAATAC TR:VR 15:5 15:0 chr5 81995017 d_692 G . Too_small_size END=81995056;SVTYPE=DEL;SVLEN=-39 TR:VR 17:5 12:0 chr1 48396347 d_9 A . PASS END=48397379;SVTYPE=DEL;SVLEN=-1032 TR:VR 23:7 10:0 chr12 126832254 i_54 C . PASS END=126832254;SVTYPE=INS;SVINSLEN=330;SVINSSEQ=CTCCTCCTCCTCCTCCTCCTCCTTCTCCTCCTTCCTCCTTCTCCTCCTCCTCCTTCTCCTCCTCCTCCTCCTCCTCCTCCTCCTTCTCCTCCTCCTTCTCCTCCTCCTTCTCCTCCTCCTCCTCCTCCTCCTACTCCTCCTCCTCCTCCTCCTCCTCCTCCTTCTCCTCCTCCTCCTTCTCCTCCTCCTCCTCCTTCTCCTCCTTCTCCTCCTTCTCCTCCTTCCATCTCCTTCTCCTCCTCCTCCTCCTTCTCATCATTCATCATAATTATGGCATCATCATCATTATACTCATCATAGTCCTAATCGTAAATAATATAATCATCTTTT TR:VR 17:3 8:0 chr13 74994349 d_178 G . PASS END=74998463;SVTYPE=DEL;SVLEN=-4114 TR:VR 21:11 14:0 chr14 89857905 d_217 A . PASS END=89858726;SVTYPE=DEL;SVLEN=-821;SVINSLEN=1;SVINSSEQ=A TR:VR 23:4 14:0 chr15 56812741 r_111_0 T TGGGGGGGTTGCCACAATTGTG]chr15:74845412] . PASS SVTYPE=BND;MATEID=r_111_1;SVINSLEN=21;SVINSSEQ=GGGGGGGTTGCCACAATTGTG TR:VR 52:7 35:0 chr15 74845412 r_111_1 A ACACAATTGTGGCAACCCCCCC]chr15:56812741] . PASS SVTYPE=BND;MATEID=r_111_0;SVINSLEN=21;SVINSSEQ=CACAATTGTGGCAACCCCCCC TR:VR 52:7 35:0 chr2 177022525 i_227 T . PASS END=177022525;SVTYPE=INS;SVINSLEN=162;SVINSSEQ=TTTGACTACTGGGAGAGCAGCAATTCAAAACATCTTCAGGAATGGTAAAAGAAGACAGAATTGGGAATGGATCAAAACAGATTTAATTGCATTTTGTTAAAAGTTCTTACGATTAGTAATAATAACATACTAATGTAATAAATCATGTCAACAACAATGATT TR:VR 38:19 18:0 chr2 48469553 d_448 A . Too_small_size END=48469567;SVTYPE=DEL;SVLEN=-14;SVINSLEN=1;SVINSSEQ=T TR:VR 22:7 17:0 chr3 94182133 r_254_0 C [chr7:6955810[TTTATTAATTT . PASS SVTYPE=BND;MATEID=r_254_1;SVINSLEN=10;SVINSSEQ=TTTATTAATT TR:VR 63:4 22:0 chr7 6955810 r_254_1 T [chr3:94182133[AATTAATAAAT . PASS SVTYPE=BND;MATEID=r_254_0;SVINSLEN=10;SVINSSEQ=AATTAATAAA TR:VR 63:4 22:0 chr7 107782223 d_787 T . PASS END=107782490;SVTYPE=DEL;SVLEN=-267 TR:VR 12:7 17:0 chrUn_GL000220v1 109858 d_851 C . Too_low_VAF END=109915;SVTYPE=DEL;SVLEN=-57 TR:VR 544:3 443:1 chr1 60980929 d_10 T . PASS END=60981623;SVTYPE=DEL;SVLEN=-694 TR:VR 13:6 13:0 chr12 128142111 d_163 T . PASS END=128144507;SVTYPE=DEL;SVLEN=-2396 TR:VR 15:7 18:0 chr13 79212649 d_179 A . PASS END=79213971;SVTYPE=DEL;SVLEN=-1322 TR:VR 24:3 11:0 chr15 56812747 r_112 T . PASS END=56864598;SVTYPE=DUP;SVLEN=51851;SVINSLEN=40;SVINSSEQ=AGTGTGTTGGGTGCTCTTGTGTATTGCCCAAGGGCAACGA TR:VR 52:3 31:0 chr2 177023146 r_193_0 T TC]chr2:195316296] . PASS SVTYPE=BND;MATEID=r_193_1;SVINSLEN=1;SVINSSEQ=C TR:VR 57:9 29:0 chr2 195316296 r_193_1 G GG]chr2:177023146] . PASS SVTYPE=BND;MATEID=r_193_0;SVINSLEN=1;SVINSSEQ=G TR:VR 57:9 29:0 chr2 5079663 r_147_0 C C[chr7:22915605[ . PASS SVTYPE=BND;MATEID=r_147_1 TR:VR 60:9 34:0 chr7 22915605 r_147_1 C ]chr2:5079663]C . PASS SVTYPE=BND;MATEID=r_147_0 TR:VR 60:9 34:0 chr22_KI270734v1_random 114377 r_244_0 C C]chr8:59570243] . PASS SVTYPE=BND;MATEID=r_244_1 TR:VR 34:7 14:0 chr8 59570243 r_244_1 T T]chr22_KI270734v1_random:114377] . PASS SVTYPE=BND;MATEID=r_244_0 TR:VR 34:7 14:0 chr3 94244579 r_255 A . PASS END=96334795;SVTYPE=DUP;SVLEN=2090216 TR:VR 36:3 33:0 chr7 76313843 r_302 T . PASS END=76543712;SVTYPE=DEL;SVLEN=-229869 TR:VR 46:4 32:0 chrX 81867130 d_892 A . PASS END=81867726;SVTYPE=DEL;SVLEN=-596 TR:VR 14:4 14:0 chr1 64084398 r_19_0 A [chr1:78341582[C . PASS SVTYPE=BND;MATEID=r_19_1 TR:VR 32:4 38:0 chr1 78341582 r_19_1 C [chr1:64084398[C . PASS SVTYPE=BND;MATEID=r_19_0 TR:VR 32:4 38:0 chr14_GL000225v1_random 56327 d_246 C . Too_low_VAF END=56550;SVTYPE=DEL;SVLEN=-223;SVINSLEN=19;SVINSSEQ=CTGGGTGATCAGTGCAGAA TR:VR 548:6 384:1 chr15 65720915 d_309 T . PASS END=65720994;SVTYPE=DEL;SVLEN=-79;SVINSLEN=1;SVINSSEQ=C TR:VR 15:7 14:0 chr17 1031586 d_358 C . PASS END=1031636;SVTYPE=DEL;SVLEN=-50 TR:VR 22:5 13:0 chr2 177024189 r_194_0 A [chr2:177079299[T . PASS SVTYPE=BND;MATEID=r_194_1 TR:VR 48:10 35:0 chr2 177079299 r_194_1 T [chr2:177024189[T . PASS SVTYPE=BND;MATEID=r_194_0 TR:VR 48:10 35:0 chr2 51056371 d_449 A . PASS END=51056440;SVTYPE=DEL;SVLEN=-69 TR:VR 19:4 14:0 chr3 96422764 r_256_0 A A]chr3:97893960] . PASS SVTYPE=BND;MATEID=r_256_1 TR:VR 33:3 37:0 chr3 97893960 r_256_1 T T]chr3:96422764] . PASS SVTYPE=BND;MATEID=r_256_0 TR:VR 33:3 37:0 chr4 90211933 r_264 C . PASS END=90227961;SVTYPE=DUP;SVLEN=16028 TR:VR 30:4 26:0 chr5 91009644 d_694 G . PASS END=91009693;SVTYPE=DEL;SVLEN=-49 TR:VR 22:8 16:0 chr7 77454646 d_779 G . PASS END=77454853;SVTYPE=DEL;SVLEN=-207 TR:VR 17:13 18:0 chr1 66358751 r_20 T . PASS END=66484714;SVTYPE=DUP;SVLEN=125963;SVINSLEN=2;SVINSSEQ=TA TR:VR 29:4 29:0 chr10 45605447 d_110 T . PASS END=45605764;SVTYPE=DEL;SVLEN=-317 TR:VR 22:4 17:0 chr13 83202189 d_180 T . PASS END=83202250;SVTYPE=DEL;SVLEN=-61 TR:VR 17:9 10:0 chr14 92975844 r_95_0 T [chr14:92986512[T . PASS SVTYPE=BND;MATEID=r_95_1 TR:VR 50:7 22:0 chr14 92986512 r_95_1 T [chr14:92975844[T . PASS SVTYPE=BND;MATEID=r_95_0 TR:VR 50:7 22:0 chr2 177025096 r_195 T . PASS END=177624718;SVTYPE=DEL;SVLEN=-599622 TR:VR 49:10 39:0 chr2 52003264 r_151 T . PASS END=200423906;SVTYPE=DUP;SVLEN=148420642 TR:VR 50:5 29:0 chr20 2406824 d_524 A . PASS END=2406920;SVTYPE=DEL;SVLEN=-96 TR:VR 15:6 16:0 chr3 97854796 r_257_0 G [chr3:145705460[T . PASS SVTYPE=BND;MATEID=r_257_1 TR:VR 31:4 38:0 chr3 145705460 r_257_1 T [chr3:97854796[T . PASS SVTYPE=BND;MATEID=r_257_0 TR:VR 31:4 38:0 chr7 7757467 d_756 A . PASS END=7762277;SVTYPE=DEL;SVLEN=-4810 TR:VR 40:3 20:0 chr10 4984762 d_93 A . PASS END=4985235;SVTYPE=DEL;SVLEN=-473 TR:VR 17:6 15:0 chr13 85926113 r_84_0 A ]chr14:30385477]C . PASS SVTYPE=BND;MATEID=r_84_1 TR:VR 35:3 29:0 chr14 30385477 r_84_1 C C[chr13:85926113[ . PASS SVTYPE=BND;MATEID=r_84_0 TR:VR 35:3 29:0 chr14 93680955 i_92 T . PASS END=93680957;SVTYPE=INS;SVINSLEN=52;SVINSSEQ=TTACATTTTCTTATAGTTACATTTACTTTTACTTACTTTACATTTACTTATA TR:VR 37:3 20:0 chr2 177025107 r_196 T . PASS END=177084796;SVTYPE=DUP;SVLEN=59689 TR:VR 48:11 36:0 chr4 100152568 d_653 G . Too_small_size END=100152605;SVTYPE=DEL;SVLEN=-37 TR:VR 21:12 15:0 chr7 78861477 d_780 T . PASS END=78861843;SVTYPE=DEL;SVLEN=-366 TR:VR 24:14 17:0 chr1 71055355 d_12 T . PASS END=71055561;SVTYPE=DEL;SVLEN=-206 TR:VR 22:10 17:0 chr10 51091214 r_37 A . PASS END=54435973;SVTYPE=DUP;SVLEN=3344759 TR:VR 37:5 22:0 chr13 85926929 i_67 C . Too_small_size END=85926929;SVTYPE=INS;SVINSLEN=37;SVINSSEQ=TTATCAGCAATGGCAACAAAAGACAAAATTGACAAAT TR:VR 23:3 14:0 chr14 94402541 d_218 G . PASS END=94402688;SVTYPE=DEL;SVLEN=-147;SVINSLEN=2;SVINSSEQ=CC TR:VR 34:8 14:0 chr15 71622384 d_311 G . PASS END=71622446;SVTYPE=DEL;SVLEN=-62 TR:VR 14:4 24:0 chr2 177025379 r_197_0 C C]chr2:196104723] . PASS SVTYPE=BND;MATEID=r_197_1 TR:VR 62:11 31:0 chr2 196104723 r_197_1 T T]chr2:177025379] . PASS SVTYPE=BND;MATEID=r_197_0 TR:VR 62:11 31:0 chr2 53851535 d_451 G . PASS END=53852326;SVTYPE=DEL;SVLEN=-791;SVINSLEN=63;SVINSSEQ=GTCAGGAGTTCAAGACAAGTTCAAGACCTGTCTCTACTAAAAATACAAAAATGAGCTGGGCAT TR:VR 25:4 16:0 chr22_KI270736v1_random 158501 i_292 A . Too_low_VAF END=158501;SVTYPE=INS;SVINSLEN=556;SVINSSEQ=ATGGAATGAGAAAGTTGAATGGAATGGAATGTGGTGGAGTGGAATGGAAGGGACTGGAATAGTGTTGGGTGGAATGGAATGGAGAGGAGTGTGAATGGAATGGAAGAAGAATGACATGGAAGAGTGGAGTGGATTGGTGTGGAATGTCTAGGAATGGAATGGAATGGAGTGGAGTGGAGTGGAGTGGAGTGAATGGTAGTGAAATGAAGTGAATGGAATGCAGATAGGTGCAATGGATGGGATACAATGGATTGGAACGTATAGAATGGAGTGGAATGGAATGGATTGCAGTGGAGTGGAATGGATTGGAGTGGAATTTATTAGAAAGGAAGTGGAGGGGAATGGAATGGATTGGAATGGAATGTATGGGAATGCAATGCTATGGAATGGAGTAAAGTGGAATGCATTGGAGTTGAATGGAAAGGAATTGAAGTGGAATGGAATGGAATTTGGAGTGGAATGGAATGTAGTGGAGTGGAGTGGAAGGGAATGGAGACGAATGGAATGTAGAATGGTGTGGAATGGAGTGGAATGGAGAGGAAGGAACAGAGTGCAA TR:VR 289:4 215:0 chr4 101878729 d_654 A . PASS END=101878798;SVTYPE=DEL;SVLEN=-69 TR:VR 12:4 20:0 chr4 96156607 r_265 C . PASS END=96166050;SVTYPE=DEL;SVLEN=-9443 TR:VR 19:4 17:0 chr6 100479237 r_292 T . PASS END=100490323;SVTYPE=DUP;SVLEN=11086 TR:VR 40:6 28:0 chr7 78914654 d_781 G . PASS END=78916121;SVTYPE=DEL;SVLEN=-1467 TR:VR 17:7 13:0 chrX 9399050 d_885 C . PASS END=9399108;SVTYPE=DEL;SVLEN=-58 TR:VR 10:3 13:0 chr10 54937757 i_18 A . PASS END=54937763;SVTYPE=INS;SVINSLEN=2787;SVINSSEQ=AGAAATGGATACATTCCTCGACACATACACTCTCCCAAGACTAAACCAGGAAGAAGTTGAATCTCTGAATAGACCAATAACAGGCTCTGAAATTGTGGCAATAATCAATAGTTTACCAACCAAAAAGAGTCCAGGACCAGATGGATTCACAGCCGAATTCTACCAGAGGTACAAGGAGGAACTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCTCCCTAACTCATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCGGTCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCCTTGATGAACATTGATGCAAAAATCCTCAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAGGCTGGTTCAATATACGCAAAGCAATACGTAATCCAGCATATAAACAGAGCCCACATTAAAAACCACATGATTATCTCAATAGATGCAGAAAAAGCCTTTGACAAAATTCAACAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATTTCAAAATAATAAGAGCTATCTATGACAAACCCACAGCCAATATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACTGGCACAAGACAGGGATGCCCTCTCTCACCGCTCCTATTCAACATAGTGTTGGAAGTTCTGGCCAGGGCAATCAGGCAGGAGAAGGAAATAAAGGGTATTCAATTAGGAAAAGAGGAAGTCAAATTATCTCCTGTTTGCAGACGACATGATTGTTTATCTAGAAAACCCCATCGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATACAAAATCAATGTACAAAAATCACAAGCATTCTTATACAACAACAACAGACAAACAGAGAGCCAAATCATGGGTGAACTCCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCCAACTTACAAGGGATGTGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAAGGAAATAAAAGAGGACACAAACAAATGGAAGAACATTCCATGCTCATGGGTAGGAAGAATCAATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTACAGATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACAGAATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATTGCCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCACACTACCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTCAGAAATAATGCCACATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAACAAGCAATGGGGAAAGGATTCCCTATTTAATAAATGGTGCTGGGAAAACTGGCTAGCCATATGTAGAAAGCTGAAACTCGATCCCTCTCTTACACCTTATACAAAAATCAATTCAAGATGGATTAAAGATTTAAACGTTAAACCTAAAACCATAAAAACCCTAGAAGAAAACCTAGGCATTACCATTCAGGACATAGGCATGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGGCAACAAAAGACAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAATTTTCGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGGGTGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGCGGAGAAATAGGAACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAGCCATCCCATTACTGGGTATATACCCAAAGGACTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCAGCACTATTCACAATAGCAAAGACTTGGAACCAACCCAAATGTCCAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTACGCAGCCATAAAAAATGATGAGTTCATATCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGCAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGGAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAGAGTATAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA TR:VR 25:3 21:0 chr2 101925860 d_496 T . PASS END=101925914;SVTYPE=DEL;SVLEN=-54 TR:VR 20:3 20:0 chr2 177026749 r_198_0 A [chr2:181507244[T . PASS SVTYPE=BND;MATEID=r_198_1 TR:VR 52:8 32:0 chr2 181507244 r_198_1 T [chr2:177026749[T . PASS SVTYPE=BND;MATEID=r_198_0 TR:VR 52:8 32:0 chr2 602146 r_145 T . PASS END=4037268;SVTYPE=DEL;SVLEN=-3435122;SVINSLEN=1;SVINSSEQ=T TR:VR 64:11 25:0 chr21 46210118 d_564 G . Too_small_size END=46210160;SVTYPE=DEL;SVLEN=-42;SVINSLEN=2;SVINSSEQ=AA TR:VR 32:4 16:0 chr13 86780126 i_69 T . PASS END=86780126;SVTYPE=INS;SVINSLEN=56;SVINSSEQ=TTCTATATATATTATATATTATATATATTATATATAATATATTATATATAATATAT TR:VR 22:4 15:0 chr14 99108025 d_219 G . PASS END=99108638;SVTYPE=DEL;SVLEN=-613 TR:VR 37:7 14:0 chr15 72270990 d_313 A . PASS END=72271158;SVTYPE=DEL;SVLEN=-168 TR:VR 18:3 14:0 chr2 10830 r_142_0 G [chr2:12561[T . PASS SVTYPE=BND;MATEID=r_142_1 TR:VR 28:12 30:0 chr2 12561 r_142_1 T [chr2:10830[T . PASS SVTYPE=BND;MATEID=r_142_0 TR:VR 28:12 30:0 chr2 177037956 r_199_0 G G]chr2:177666229] . PASS SVTYPE=BND;MATEID=r_199_1 TR:VR 48:8 41:0 chr2 177666229 r_199_1 T T]chr2:177037956] . PASS SVTYPE=BND;MATEID=r_199_0 TR:VR 48:8 41:0 chr2 62938459 d_452 T . PASS END=62938516;SVTYPE=DEL;SVLEN=-57 TR:VR 23:3 15:0 chr1 76027143 r_21 G . PASS END=86592582;SVTYPE=DEL;SVLEN=-10565439;SVINSLEN=17;SVINSSEQ=CAATACATGATTGTAAG TR:VR 33:3 33:0 chr10 61549954 d_111 T . Too_small_size END=61549991;SVTYPE=DEL;SVLEN=-37;SVINSLEN=1;SVINSSEQ=C TR:VR 23:5 19:0 chr13 90762850 d_181 G . Too_small_size END=90762889;SVTYPE=DEL;SVLEN=-39 TR:VR 16:3 19:0 chr14 99213994 d_220 A . PASS END=99214493;SVTYPE=DEL;SVLEN=-499 TR:VR 34:6 11:0 chr15 72473295 r_113_0 T TT[chr17:36934227[ . PASS SVTYPE=BND;MATEID=r_113_1;SVINSLEN=1;SVINSSEQ=T TR:VR 27:5 30:0 chr17 36934227 r_113_1 C ]chr15:72473295]AC . PASS SVTYPE=BND;MATEID=r_113_0;SVINSLEN=1;SVINSSEQ=A TR:VR 27:5 30:0 chr2 10945522 d_439 G . PASS END=10945844;SVTYPE=DEL;SVLEN=-322 TR:VR 24:5 12:0 chr2 177109919 r_200 A . PASS END=196196192;SVTYPE=DUP;SVLEN=19086273 TR:VR 44:6 28:0 chr4 111622868 d_655 A . Too_small_size END=111622910;SVTYPE=DEL;SVLEN=-42;SVINSLEN=3;SVINSSEQ=GGT TR:VR 18:4 14:0 chr6 105866050 d_730 T . PASS END=105866127;SVTYPE=DEL;SVLEN=-77 TR:VR 16:10 11:0 chr7 92330313 r_303_0 A A[chrX:119151438[ . PASS SVTYPE=BND;MATEID=r_303_1 TR:VR 34:3 30:0 chrX 119151438 r_303_1 T ]chr7:92330313]T . PASS SVTYPE=BND;MATEID=r_303_0 TR:VR 34:3 30:0 chr1 76995574 d_13 C . Too_small_size END=76995618;SVTYPE=DEL;SVLEN=-44 TR:VR 14:6 11:0 chr10 74227552 d_112 A . PASS END=74229695;SVTYPE=DEL;SVLEN=-2143 TR:VR 25:7 12:0 chr13 91146554 d_182 G . PASS END=91147517;SVTYPE=DEL;SVLEN=-963 TR:VR 29:4 14:0 chr15 77840759 d_314 A . PASS END=77844770;SVTYPE=DEL;SVLEN=-4011;SVINSLEN=3;SVINSSEQ=CAT TR:VR 12:3 17:0 chr2 116829656 d_497 T . PASS END=116829744;SVTYPE=DEL;SVLEN=-88 TR:VR 16:3 16:0 chr2 177127215 r_201 C . PASS END=195356004;SVTYPE=DUP;SVLEN=18228789 TR:VR 67:11 39:0 chr2 6487413 r_148_0 G ]chr4:10263393]G . PASS SVTYPE=BND;MATEID=r_148_1 TR:VR 46:4 30:0 chr4 10263393 r_148_1 G G[chr2:6487413[ . PASS SVTYPE=BND;MATEID=r_148_0 TR:VR 46:4 30:0 chr4 112285599 r_266 C . PASS END=112495076;SVTYPE=DEL;SVLEN=-209477 TR:VR 25:8 40:0 chr5 105126776 r_280_0 C C]chr5:114593090] . PASS SVTYPE=BND;MATEID=r_280_1 TR:VR 42:11 24:0 chr5 114593090 r_280_1 A A]chr5:105126776] . PASS SVTYPE=BND;MATEID=r_280_0 TR:VR 42:11 24:0 chr6 106713661 r_293 G . PASS END=106803452;SVTYPE=DUP;SVLEN=89791 TR:VR 56:8 33:0 chr7 120931952 i_387 T . PASS END=120931952;SVTYPE=INS;SVINSLEN=1155;SVINSSEQ=AAAGGCGTGGGCAAGGACTTCATGTCCAAAACACCAAAAGCAATGACAACAAAAGACAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAATTTTTGCAACCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGGGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAAACACATGAAGAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAATCAAAACCACTATGAGATATCATCTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGCGGAGAAATAGGAACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTGGAAGTCAGTGTGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAGCCATCCCATTACTGGGTATATACCCAAATGAGTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAATAGCAAAGACTTGGAACCAACCCAAATGTCCAACAATGATAGACTGGATTAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATGATGAGTTCATACCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGGAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAGAGTATAATAAAAAAAAAAAAAAAAAAAAAAAAAAAATAAAGTATCTCATAAACTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA TR:VR 21:4 15:0 chr1 78614742 r_22_0 T T]chr18:55289669] . PASS SVTYPE=BND;MATEID=r_22_1 TR:VR 37:4 30:0 chr18 55289669 r_22_1 G G]chr1:78614742] . PASS SVTYPE=BND;MATEID=r_22_0 TR:VR 37:4 30:0 chr12 133008628 d_168 T . PASS END=133008794;SVTYPE=DEL;SVLEN=-166 TR:VR 13:5 11:0 chr13 93527916 r_85_0 G [chr13:93531806[A . PASS SVTYPE=BND;MATEID=r_85_1 TR:VR 28:3 11:0 chr13 93531806 r_85_1 A [chr13:93527916[A . PASS SVTYPE=BND;MATEID=r_85_0 TR:VR 28:3 11:0 chr14_GL000225v1_random 100302 r_102_0 G ]chr4:190022774]GCTGCCCGGACAACCAGCCAGCGAAG . Too_low_VAF SVTYPE=BND;MATEID=r_102_1;SVINSLEN=25;SVINSSEQ=GCTGCCCGGACAACCAGCCAGCGAA TR:VR 449:4 379:0 chr4 190022774 r_102_1 G GTTCGCTGGCTGGTTGTCCGGGCAGC[chr14_GL000225v1_random:100302[ . Too_low_VAF SVTYPE=BND;MATEID=r_102_0;SVINSLEN=25;SVINSSEQ=TTCGCTGGCTGGTTGTCCGGGCAGC TR:VR 449:4 379:0 chr15 79976351 r_114_0 T ]chr17:27240620]G . PASS SVTYPE=BND;MATEID=r_114_1 TR:VR 25:4 34:0 chr17 27240620 r_114_1 G G[chr15:79976351[ . PASS SVTYPE=BND;MATEID=r_114_0 TR:VR 25:4 34:0 chr2 116829904 d_498 A . PASS END=116830470;SVTYPE=DEL;SVLEN=-566;SVINSLEN=44;SVINSSEQ=CGTATACATGTGTATATACGTATATGTATACATTATATATACGT TR:VR 16:3 16:0 chr2 177127657 r_202 A . PASS END=196172030;SVTYPE=DEL;SVLEN=-19044373 TR:VR 54:12 26:0 chr2 65924197 d_454 T . PASS END=65924326;SVTYPE=DEL;SVLEN=-129 TR:VR 23:10 15:0 chr4 113146405 d_656 G . Too_small_size END=113146440;SVTYPE=DEL;SVLEN=-35 TR:VR 16:3 17:0 chr5 105126819 r_281_0 T [chr5:114593106[A . PASS SVTYPE=BND;MATEID=r_281_1 TR:VR 42:12 24:0 chr5 114593106 r_281_1 A [chr5:105126819[A . PASS SVTYPE=BND;MATEID=r_281_0 TR:VR 42:12 24:0 chr1 144103054 d_64 C . PASS END=144103285;SVTYPE=DEL;SVLEN=-231;SVINSLEN=151;SVINSSEQ=TGGCCGGCTTGGTTGGCTGGGCAGGCCGGCCGGCTTGGCTGGCTGGCTGGTTGGCTGGCTTGGCTAGCTGATCAGGCTTGGCTGGTTGGCTGGCTTGGTTGGCTTGGCTGGCTGGCTTGGATGGCCGGGTGGCTTGTCTGGCCTGGCTGGC TR:VR 58:3 48:1 chr1 80808117 d_14 T . PASS END=80808244;SVTYPE=DEL;SVLEN=-127 TR:VR 17:9 16:0 chr10 8078835 d_94 C . PASS END=8079214;SVTYPE=DEL;SVLEN=-379;SVINSLEN=6;SVINSSEQ=AAATTA TR:VR 26:4 16:0 chr12 17759888 d_148 T . PASS END=17760965;SVTYPE=DEL;SVLEN=-1077 TR:VR 12:7 16:0 chr13 94726823 d_183 T . PASS END=94726951;SVTYPE=DEL;SVLEN=-128 TR:VR 17:4 16:0 chr15 82874104 r_115_0 A ATATTTGGAGCACTTTTTGGCCTATGTTGAAAAATGAAGTATCTTTCCATAAAAACTAGGCAGAAGCTTTTGGAGAAATTTCTTTGTGATGTGTGCATTCATCTCACACAGTTGAACT[chr22:12419157[ . PASS SVTYPE=BND;MATEID=r_115_1;SVINSLEN=117;SVINSSEQ=TATTTGGAGCACTTTTTGGCCTATGTTGAAAAATGAAGTATCTTTCCATAAAAACTAGGCAGAAGCTTTTGGAGAAATTTCTTTGTGATGTGTGCATTCATCTCACACAGTTGAACT TR:VR 72:4 47:0 chr22 12419157 r_115_1 T ]chr15:82874104]AGTTCAACTGTGTGAGATGAATGCACACATCACAAAGAAATTTCTCCAAAAGCTTCTGCCTAGTTTTTATGGAAAGATACTTCATTTTTCAACATAGGCCAAAAAGTGCTCCAAATAT . PASS SVTYPE=BND;MATEID=r_115_0;SVINSLEN=117;SVINSSEQ=AGTTCAACTGTGTGAGATGAATGCACACATCACAAAGAAATTTCTCCAAAAGCTTCTGCCTAGTTTTTATGGAAAGATACTTCATTTTTCAACATAGGCCAAAAAGTGCTCCAAATA TR:VR 72:4 47:0 chr2 177624839 r_203 G . PASS END=177665410;SVTYPE=DUP;SVLEN=40571 TR:VR 62:9 29:0 chr2 66546853 d_455 T . PASS END=66546903;SVTYPE=DEL;SVLEN=-50 TR:VR 25:3 12:0 chr4 130485588 i_324 A . PASS END=130485588;SVTYPE=INS;SVINSLEN=205;SVINSSEQ=GAAAAGTTGTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAGATATTAAAGTCTTTATTTGCCCCCCCCCCATTTTTATTTTCAGTAATACAGGGTAAAATCATGCTTAGTGAATTTTCTTTTAGGAGATGTAAGAGAGTCTACAAATCTTTATTCTACTATTTCCCAAAATATACCCAATTACTGG TR:VR 17:4 14:0 chr5 105127275 d_695 A . Too_small_size END=105127317;SVTYPE=DEL;SVLEN=-42 TR:VR 23:6 14:0 chr7 13037703 d_758 C . PASS END=13039253;SVTYPE=DEL;SVLEN=-1550 TR:VR 41:5 15:0 chr1 14554144 r_7_0 A ]chr14:101984141]AAAAATGTTTGTAGAGACT . PASS SVTYPE=BND;MATEID=r_7_1;SVINSLEN=18;SVINSSEQ=AAAAATGTTTGTAGAGAC TR:VR 63:4 27:0 chr14 101984141 r_7_1 T TGTCTCTACAAACATTTTT[chr1:14554144[ . PASS SVTYPE=BND;MATEID=r_7_0;SVINSLEN=18;SVINSSEQ=GTCTCTACAAACATTTTT TR:VR 63:4 27:0 chr1 88700403 d_15 T . Too_small_size END=88700444;SVTYPE=DEL;SVLEN=-41 TR:VR 21:6 14:0 chr12 1876540 r_62_0 A A[chr2:55529790[ . PASS SVTYPE=BND;MATEID=r_62_1 TR:VR 35:11 29:0 chr2 55529790 r_62_1 G ]chr12:1876540]G . PASS SVTYPE=BND;MATEID=r_62_0 TR:VR 35:11 29:0 chr14_GL000225v1_random 102987 i_114 C . Too_low_VAF END=102987;SVTYPE=INS;SVINSLEN=1772;SVINSSEQ=ATATAGGGAATTTTGACAAATCTCTGCACTGATCACCCAGGTGATTCAACTCTTGTCTAGCATCTGCCTACAGGGTGTATTTGGAAATATCTCTGCACTGATCATCAAGGTGATGTAACTATTGTTCAGGCTCTGCCTACAGGGGCATTTTCACAGATTCCTGAACTGATAACAAAGGTGATGTAAATCTTTCTCTAGGCCTGCCAACAGAGGCGTTTTCACATATCCCTGAACTGATGACAGTAGCGTGATGTAACTCTCTTGCCTAGTGGCTTTGCCCACAGGGGATATTGCAGACATATCTCTGCACTGATCACCCAGGTGATGCAAATCTTCACTATGCTCTGCCTACAGGGGCCATTGTGACATTATCTCCGCACTGATCACCCAGGTGATGTAATTCTTTTCTATTCCCTGCTTTCAAACAGGGCGTTGTGACATCACTCTTTAAAAAACGGATCACCCGGGTTATGTAACCTCTTGTCTAGGCTCTGCCTATGGGGGCATTGTGTCTTATGTCTGCACTGATCACCCAGGAGATGTGAGTCTCTTTTCTAAGTTCTGCCAGGAGGGATTTCTATGGACATATCTCTGCACTGATCGCTGAGGTGATATAAAACTTGTCTAGGCTTTGCCCTACAGTCGGATTTATGACATATCTCTGCAATGATCACCCAGGTGATGTAACTCTTGTCTAGGCTCTGCTTACAGGGGGTATTGTGAGATATCTCTGCACTGATAATCCAGGTGATATAACTCTCTTGTATAGGCTCTACCTACAGGGTCATTTTCACATATCACTGCACTGATCACCGAGGTGATGTAACTATTGTATAGGCTTCGCCCGACAGGGGGGCATTGAGACATACCCGTGCACTGATCACCCAGGTGATGTAACTCTTATGTTGGATATGCCCATGGGGCATTGTGACATATTACTGCACTAATCATCCAGGTGATGGGACTGCTCTGCCTCTAGGCTATGGTATGAGGAGCTTTGTGTCATATCTCTGCCCCTGATCACCCAGATGATGTAACTCTTGTATAGGCTCTGCCTACTGGAGAGCATTGTGACATATCTCCGCACTGATCATCCAGGTGATGTCACTTTTGTCAAGGATATGGCTACAGGGGCATTGTGACATGTCACTGCACTGATCACACAGCTGATGTTACTCTTGTCTAGGCTCTGGCTACGGGGTCTTGTGACACATGTCTGCACTGATCACCCACCTGATGGAATCCTAGTCTAGGCTCTGCCAAAAGGGGGCATTGCGACATAACTCTGCACTGATCACCCAGGTCATGGGACTCTTGTCTAGGCTCTGCCTATGTGCCGGAGTGCATTGTGACATATCTCTGCAGTGATCACGGAGGTGATGTAAATCTTGTCTATATCTGCCTACTGGCGGCATTGTGGAATATTTCTGCATTGATCACCCAGGTGATGGACTTTTGTCTTGGATCTCAGACTATGGGGGCATAGTGACATATTTCTGCACTGATCACTCTTACTGATGTAACCGTCAGGGGAAGCTGGCCAAAAGGACGGAATTGTGACAGATATCTCCACTGATCACCCAGGCGATGTAACAATATTCTTGGGATTTGGCTACCAGGGCAGGCCAGGACATATCTTTGCACTGATAACCAAGGGATGTAACTCTTGTCTAGGCTTGGCCACACAGGGGATTTGTGTCATATTTCTGCACTGATCACCCTGGGGGAGGGAACTCTGCCTACACTCCGCCTACAGGAGGCAGCGATGACTT TR:VR 423:3 381:0 chr18 25963853 d_396 T . PASS END=25964028;SVTYPE=DEL;SVLEN=-175 TR:VR 15:6 17:0 chr2 177625151 r_204 G . PASS END=177664987;SVTYPE=DEL;SVLEN=-39836 TR:VR 61:11 27:0 chr2 69524952 d_456 T . PASS END=69528110;SVTYPE=DEL;SVLEN=-3158 TR:VR 21:6 14:0 chr4 139537993 r_267 G . PASS END=187008458;SVTYPE=DUP;SVLEN=47470465 TR:VR 33:5 34:0 chr6 107456146 d_733 C . PASS END=107458179;SVTYPE=DEL;SVLEN=-2033 TR:VR 21:6 27:0 chr1 14559980 r_8_0 G GTAATGC]chr22:17725981] . PASS SVTYPE=BND;MATEID=r_8_1;SVINSLEN=6;SVINSSEQ=TAATGC TR:VR 56:3 30:0 chr22 17725981 r_8_1 G GGCATTA]chr1:14559980] . PASS SVTYPE=BND;MATEID=r_8_0;SVINSLEN=6;SVINSSEQ=GCATTA TR:VR 56:3 30:0 chr1 92782184 d_16 G . PASS END=92783737;SVTYPE=DEL;SVLEN=-1553 TR:VR 16:6 15:0 chr10 87923332 r_39 C . PASS END=87950367;SVTYPE=DUP;SVLEN=27035 TR:VR 33:13 24:0 chr12 2012840 r_63 C . PASS END=2018691;SVTYPE=DEL;SVLEN=-5851 TR:VR 16:11 25:0 chr18 34221467 d_397 A . PASS END=34221651;SVTYPE=DEL;SVLEN=-184 TR:VR 14:9 9:0 chr2 177625138 r_205_0 T T]chr2:181570070] . PASS SVTYPE=BND;MATEID=r_205_1 TR:VR 56:10 33:0 chr2 181570070 r_205_1 G G]chr2:177625138] . PASS SVTYPE=BND;MATEID=r_205_0 TR:VR 56:10 33:0 chr2 69887466 d_457 G . PASS END=69887609;SVTYPE=DEL;SVLEN=-143 TR:VR 26:13 13:0 chr4 139888369 r_268 C . PASS END=159929833;SVTYPE=DUP;SVLEN=20041464;SVINSLEN=1;SVINSSEQ=G TR:VR 34:4 27:0 chr5 109342880 i_347 G . PASS END=109342880;SVTYPE=INS;SVINSLEN=174;SVINSSEQ=GGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCCGTCCGGGAGGTGAGGGGCGCCTCTGCCCGGCTGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCAGCCGCCCCGTCCGGGAGGGTGGTTGGGGGGTCAGCCCCCGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTG TR:VR 15:5 19:0 chr6 123154409 d_734 T . Too_small_size END=123154445;SVTYPE=DEL;SVLEN=-36 TR:VR 17:3 12:0 chr7 13685282 d_759 T . PASS END=13685471;SVTYPE=DEL;SVLEN=-189 TR:VR 35:7 11:0 chr7 97264705 d_782 G . Too_small_size END=97264750;SVTYPE=DEL;SVLEN=-45 TR:VR 24:14 19:0 chr14 104695275 d_221 G . Too_small_size END=104695314;SVTYPE=DEL;SVLEN=-39 TR:VR 19:3 13:0 chr15 89727788 r_116 C . PASS END=89847002;SVTYPE=DUP;SVLEN=119214 TR:VR 48:7 30:0 chr18 37163858 r_135 T . PASS END=37225283;SVTYPE=DUP;SVLEN=61425;SVINSLEN=2;SVINSSEQ=CC TR:VR 34:3 21:0 chr2 177661255 r_206_0 T [chr2:194802712[T . PASS SVTYPE=BND;MATEID=r_206_1 TR:VR 45:6 33:0 chr2 194802712 r_206_1 T [chr2:177661255[T . PASS SVTYPE=BND;MATEID=r_206_0 TR:VR 45:6 33:0 chr2 79234 r_143 A . PASS END=503211;SVTYPE=DEL;SVLEN=-423977 TR:VR 52:9 32:0 chr4 146884931 d_657 T . Too_small_size END=146884967;SVTYPE=DEL;SVLEN=-36 TR:VR 20:3 22:0 chr5 11077732 d_673 G . PASS END=11082456;SVTYPE=DEL;SVLEN=-4724 TR:VR 21:3 26:0 chr6 128818414 d_735 G . PASS END=128818512;SVTYPE=DEL;SVLEN=-98;SVINSLEN=1;SVINSSEQ=G TR:VR 14:4 16:0 chr7 14392965 d_760 A . PASS END=14393021;SVTYPE=DEL;SVLEN=-56 TR:VR 34:5 9:0 chr8 100426437 i_425 T . PASS END=100426437;SVTYPE=INS;SVINSLEN=3483;SVINSSEQ=CCTGCCAATCACCACCACCACCATTGTAGCTGTTACCGCCGCATGCCACCACTACCACCACCACCACCATCTACCACCACCGCCGTCGACATTACCACCATCACCACCACCACCACTACCACCACCACCATGATGCCACCGTCGTTACCACCGTCACCACCACCACCACCGCCGTCGTTGCCGCCTGCCACCATGACACCCCGCCGCCGCCGCTGCCACCACCACCGCTGCCACCACCACCACCATTGCCACCGCCACCGCCATTACCACCACCGTCACCACCATCATTGCCACCATCGCCACCACCACCACCATCATTACCACCACCACCACTGCCACCTTTTGCCGCCACCACTACCACCACCGTCATTGCCGCCGCCGCCACTGCCACCACCGCCACCATTGCCACCGCCGCATCACCACCGCCATCACCGCCATCATTGCCACCATCACCACCACCACCGCCATCATTACCACCACCACCGCTACCACCTTTACCACCACCGCCACTACCACCGCCACCATCATTGCCGCCACCACCGCTGCCGCCGCCGCCGCCATCGCCGCCGTCATTACCACCATCACCACCGCCACCTGCCACCTTTACCGCCGCCGCCGCTACCACCACCGCCGCCGTTGCCGCCGCCGCCGCCATTACCGCCGCCGCCGCCGTTGCCACCATCACCACCACCATCGCCGCCACCGCCGCCATCGTTGCCGCCGCCGCCGCTGCCGCCGCCGCCGCCGTCGCCGCCGTCGTTGCCACCGTCGCCGCCGCCGCCGCCGCTGCCACCGCCGCCACTGCCGCCGCCGCCGCCATTACCACCGCCACCGCCGTTGCCGCCGTCGCCGCCGCCGCCACCGCCGCCGCCACCATCATTGCCGCCACCACCGCTACCACCGCCGCCGCTGCCGCCGCCACCACTGCCGCCGCCGCCGCCATTACCGCCGCCACCACCGTTGCCACCACCACCGCCGCCGTTGCCACCATCACCACCGCCATCACCACCACCGCCGCCGTCGTTGCCGCCGCCACCGCTGCCGCCACCACCACCGTCGCCGCCGTCATTGCCGCCGTCACCGCCACCACCACCTGCCTTTACCACCGCCGCCGCCACTACCACCACCGCCATTACCACCACCACCACCATTGCCACCATCACCACCGCCGCCGCCACCGCCGCCGCCGTCGTTGCCACCACCGCCGCTGCCGCCGCCGCCGCCGTCGCCGCCATCGTTACCACCATCACCGCCGCCGCCGCGGCTGCCGCCACCGCCGCCGCCGCCGCCGCCGGTGCCACCACCGCCGCCATTGCCACCATCACCGCCGCCGCCGCCTACCACCACCACCGCCATCACCGCCGTCATTGCCGCCATCACCGCCACCGCCGCCGCCTTTACTGCCACCACCACCACCAACACTACCGCCGCCGCCGCTACCACCGCCGCCGCCGTTGCCGCCACCGCCGCCGTTGCCGCCACCATCACCACCATCGTTACCACCGTCGCCGCCACCACCTGCCGCCTTTGCCGCCGCCGCCGCGGCCGCCGCCGCCGCCGCTGCCGCCACCGCCGCCATTACCACCGCCACCGCCGTTACCGCCGCCGTCGCCACCGTCATTACCACCGTCGCCGCCGCCGCCGCCGCCGGCGCCGCCGCCGCCACTGCCGCCACCACCATTGCCACCACCGCCGCCATTACCACCATCGCCGCCGCCACCGCCACCGCCGCCGCCGTCGTTACCACCACCGCCGCTGCCGCCGCCGCCGCCGTCGCCGCCGTCGTTGCCGCCGTCGCCGCCGCCGCCGCCACCTTTACCGCCGCCGCCGCCGCCGCCGCCGTCTTTACCGCCGCCGCCGTTGCCACCACCGCCGCCATTGCCGCCGCCGCTGCCATTACCGCCGCCATCACCGCCGTCGTTACCACCGTCACCGCCACCGCCACCACCTTTACCACCGCCGCCGCCTTTACCGCCGCCGCCGCTGCCACCACCGCCGTTACCGCCGCCGCCGCCGTTGCCGCCGCCGTCACCACCATCGTTACCACCATCGCCGCCGCCGCCGCCGCCTTTACCGCCGCCACCACCTGCCGCCGCCGCCACCACTACCACCACCACCACCGTTGCCACCGCCGCCGCCATTGCCGCCGCCGTCGCCGCCGTCATTGCCGCCATCACCACCACTACCACCACCTTTACCACCGCCGCCGCCTGCCGCCACCACCGCCGTTGCCGCCGCCGCCGCCGTTACCACCGTCGCCGCCGCCGCCGCCACCACCGCCACCGTCATTGCCACCGCCACCACTACCACCACCACCACCGCCATCACCGCCATCATTACCACCATCACCACCACCACCACCACTGTTACCACCACCACCACTACCACCACCACCACCATTACCACCACCACCACCATTACCACCATCACCACCACCACCACTACCACCACCACCACCATCACCACCATCATTACCACCACCATCTACCACCACCACCACCTTTACCACCACCACCACCTTTACCACCACCACCACTACCACCACCACCACCATTACCACCACCACCACCATTACCACCACCATCACCACCATCATTACCACCATCACCACCACCACCAGCCGCCGCTGCCACCACCACCACCACCACCACCACCATCATTACCACCACCACCACTACCACCATCTTACCACCACCACCACCACCATTACCACCACCACCACTACCACCACCACCATCATTACCACCACCACCACTACCACCACCACCACCATTACCACCACCACATCACCACCACCATCACCACCATCATTACCACCATCACCACCACCACCACCACCACCACCACCACCACCACCATCATCCACCACCACCACCACCACCTTTACCACCACCACCACTACCACCACCACCATCATTACCACCACCACCACTACCACCACCACCATTACCACCACCACATCACCACCACCATCACCACCATCATTACCACCATCACCACCACCACCACCACCTTTACCACCACCACCACCACCACCACCATCTTTACCACCACCACCACCACCTTTACCACCACCACCACCACCACCACCATCTTTACCACCACCACCACTACCACCACCACCACCATTACCACCACCACCACCATTACCACCATCACCACCACCACCACTACCACCACCACCACCATCACCACCATCATTACCACCATCACCACCACCACCACCACCTTTACCACCACCACCACCTTTACCACCACCACCCTACCACCACCACCATCATTACCACCACCCTACCACCACCACCATCACCACCATCATTACCACCATCACCACCACCACCACCACGTTTACCACCACCACCACTACCACCACCACCATCATTACCACCACCACCACCACCACCCGCCACCACCACCACCACTACCACCACCACCACCATCATTACCACCACCACCACCACCACCACCACCACCATCATTACC TR:VR 21:4 7:0 chr1 146938233 d_65 T . PASS END=146954901;SVTYPE=DEL;SVLEN=-16668;SVINSLEN=7;SVINSSEQ=GTCAATA TR:VR 31:6 30:0 chr1 95357788 d_17 C . PASS END=95358020;SVTYPE=DEL;SVLEN=-232 TR:VR 16:5 17:0 chr11 109273556 d_140 C . PASS END=109273721;SVTYPE=DEL;SVLEN=-165 TR:VR 18:6 12:0 chr12 21562551 d_149 C . PASS END=21562613;SVTYPE=DEL;SVLEN=-62 TR:VR 13:4 13:0 chr15 93275015 d_317 G . PASS END=93275097;SVTYPE=DEL;SVLEN=-82 TR:VR 22:6 8:0 chr2 120698878 d_502 G . Too_small_size END=120698913;SVTYPE=DEL;SVLEN=-35 TR:VR 23:6 22:0 chr2 177672672 r_207_0 T [chr2:195353390[GA . PASS SVTYPE=BND;MATEID=r_207_1;SVINSLEN=1;SVINSSEQ=G TR:VR 48:11 44:0 chr2 195353390 r_207_1 A [chr2:177672672[CA . PASS SVTYPE=BND;MATEID=r_207_0;SVINSLEN=1;SVINSSEQ=C TR:VR 48:11 44:0 chr2 81696043 d_458 T . Too_small_size END=81696079;SVTYPE=DEL;SVLEN=-36 TR:VR 18:3 17:0 chr4 147691161 d_658 A . PASS END=147691220;SVTYPE=DEL;SVLEN=-59;SVINSLEN=7;SVINSSEQ=TTCTCTC TR:VR 18:9 12:0 chr5 112116200 d_697 A . PASS END=112116277;SVTYPE=DEL;SVLEN=-77 TR:VR 9:4 25:0 chr6 132062012 d_736 G . PASS END=132063314;SVTYPE=DEL;SVLEN=-1302 TR:VR 10:5 11:0 chr7 146784526 d_789 C . Too_small_size END=146784566;SVTYPE=DEL;SVLEN=-40 TR:VR 16:3 12:0 chr8 106803848 d_814 A . PASS END=106804445;SVTYPE=DEL;SVLEN=-597 TR:VR 20:4 18:0 chr8 43403225 r_306_0 T [chr8:43408855[G . PASS SVTYPE=BND;MATEID=r_306_1 TR:VR 30:14 16:0 chr8 43408855 r_306_1 G [chr8:43403225[G . PASS SVTYPE=BND;MATEID=r_306_0 TR:VR 30:14 16:0 chr1 96347562 d_18 G . PASS END=96347951;SVTYPE=DEL;SVLEN=-389 TR:VR 22:6 10:0 chr11 113642360 d_141 A . PASS END=113642421;SVTYPE=DEL;SVLEN=-61 TR:VR 29:8 15:0 chr18 39683936 d_398 G . PASS END=39684380;SVTYPE=DEL;SVLEN=-444 TR:VR 11:7 8:0 chr2 124157083 r_155_0 T T]chr2:151736307] . PASS SVTYPE=BND;MATEID=r_155_1 TR:VR 26:5 31:0 chr2 151736307 r_155_1 T T]chr2:124157083] . PASS SVTYPE=BND;MATEID=r_155_0 TR:VR 26:5 31:0 chr2 177674720 r_208_0 G G]chr2:195356874] . PASS SVTYPE=BND;MATEID=r_208_1 TR:VR 56:11 47:0 chr2 195356874 r_208_1 A A]chr2:177674720] . PASS SVTYPE=BND;MATEID=r_208_0 TR:VR 56:11 47:0 chr2 82961211 r_152_0 A A[chr3:22051082[ . PASS SVTYPE=BND;MATEID=r_152_1 TR:VR 35:3 24:0 chr3 22051082 r_152_1 A ]chr2:82961211]A . PASS SVTYPE=BND;MATEID=r_152_0 TR:VR 35:3 24:0 chr3 113144690 d_616 T . PASS END=113144742;SVTYPE=DEL;SVLEN=-52 TR:VR 17:8 15:0 chr4 150414482 r_269_0 T T]chr4:165140459] . PASS SVTYPE=BND;MATEID=r_269_1 TR:VR 41:4 37:0 chr4 165140459 r_269_1 T T]chr4:150414482] . PASS SVTYPE=BND;MATEID=r_269_0 TR:VR 41:4 37:0 chr6 138663437 d_737 T . PASS END=138663720;SVTYPE=DEL;SVLEN=-283 TR:VR 16:4 14:0 chr8 110451082 d_815 T . PASS END=110452654;SVTYPE=DEL;SVLEN=-1572 TR:VR 26:4 20:0 chr1 150559910 r_26_0 A [chr1:231984119[G . PASS SVTYPE=BND;MATEID=r_26_1 TR:VR 49:9 30:0 chr1 231984119 r_26_1 G [chr1:150559910[G . PASS SVTYPE=BND;MATEID=r_26_0 TR:VR 49:9 30:0 chr1 98785972 d_19 C . Too_small_size END=98786014;SVTYPE=DEL;SVLEN=-42 TR:VR 26:12 22:0 chr12 24533105 d_150 A . PASS END=24533659;SVTYPE=DEL;SVLEN=-554 TR:VR 8:4 14:0 chr2 177922928 r_209_0 T T[chr8:119124061[ . Too_low_VAF SVTYPE=BND;MATEID=r_209_1 TR:VR 73:3 43:0 chr8 119124061 r_209_1 C ]chr2:177922928]C . Too_low_VAF SVTYPE=BND;MATEID=r_209_0 TR:VR 73:3 43:0 chr2 83089311 d_459 C . Too_small_size END=83089346;SVTYPE=DEL;SVLEN=-35 TR:VR 29:14 11:0 chr4 152290602 r_270 A . PASS END=169869600;SVTYPE=DEL;SVLEN=-17578998 TR:VR 33:3 22:0 chr5 127078419 r_282_0 T [chr5:135404787[T . PASS SVTYPE=BND;MATEID=r_282_1 TR:VR 45:9 33:0 chr5 135404787 r_282_1 T [chr5:127078419[T . PASS SVTYPE=BND;MATEID=r_282_0 TR:VR 45:9 33:0 chr6 146431895 d_738 G . PASS END=146431983;SVTYPE=DEL;SVLEN=-88 TR:VR 15:8 14:0 chr8 113028469 r_310 T . PASS END=113038090;SVTYPE=DEL;SVLEN=-9621 TR:VR 54:9 16:0 chr8 49136267 r_307 G . PASS END=49139383;SVTYPE=DEL;SVLEN=-3116;SVINSLEN=10;SVINSSEQ=AGATCGAATT TR:VR 36:16 19:0 chr1 150560143 r_27_0 T T]chr14:75383647] . PASS SVTYPE=BND;MATEID=r_27_1 TR:VR 41:9 32:0 chr14 75383647 r_27_1 T T]chr1:150560143] . PASS SVTYPE=BND;MATEID=r_27_0 TR:VR 41:9 32:0 chr10 100389293 i_20 C . PASS END=100389371;SVTYPE=INS;SVINSLEN=142;SVINSSEQ=GCCCAACTAATTTTTGTATTTTGGTAAAGATGAAGTTTCACCATGTTGTCCAGGCTGGTCTTGAATTCCTGGACTCAAGTGATCCATCCACTTTGGCCTCCCAAAGTGCTGGGATTATACATGTGAGCCACCACAGGGAGGC TR:VR 18:5 18:0 chr14 106212133 r_96 A . PASS END=106214603;SVTYPE=DEL;SVLEN=-2470;SVINSLEN=1;SVINSSEQ=G TR:VR 51:4 38:1 chr18 41360568 d_400 G . PASS END=41360670;SVTYPE=DEL;SVLEN=-102 TR:VR 17:10 14:0 chr2 131625422 d_503 A . PASS END=131625680;SVTYPE=DEL;SVLEN=-258 TR:VR 18:4 19:0 chr2 177932754 r_210 T . PASS END=183996274;SVTYPE=DUP;SVLEN=6063520 TR:VR 42:3 28:0 chr3 119626173 d_617 C . PASS END=119626548;SVTYPE=DEL;SVLEN=-375 TR:VR 15:6 16:0 chr4 152324795 d_659 A . PASS END=152326703;SVTYPE=DEL;SVLEN=-1908 TR:VR 9:4 20:0 chr5 129988456 d_699 T . Too_small_size END=129988496;SVTYPE=DEL;SVLEN=-40 TR:VR 31:10 13:0 chr6 148782129 d_739 G . PASS END=148782895;SVTYPE=DEL;SVLEN=-766 TR:VR 9:6 23:0 chr8 113039079 r_311 C . PASS END=117609761;SVTYPE=DEL;SVLEN=-4570682 TR:VR 65:9 30:0 chr1 152703438 d_66 A . PASS END=152707979;SVTYPE=DEL;SVLEN=-4541 TR:VR 24:9 23:0 chr10 107346519 r_40 T . PASS END=107457089;SVTYPE=DEL;SVLEN=-110570;SVINSLEN=2;SVINSSEQ=AT TR:VR 33:6 45:0 chr12 3558772 d_146 T . Too_small_size END=3558813;SVTYPE=DEL;SVLEN=-41 TR:VR 14:3 13:0 chr16 2175475 r_119_0 C C]chr7:124857904] . PASS SVTYPE=BND;MATEID=r_119_1 TR:VR 43:4 30:0 chr7 124857904 r_119_1 C C]chr16:2175475] . PASS SVTYPE=BND;MATEID=r_119_0 TR:VR 43:4 30:0 chr18 42368704 d_401 T . Too_small_size END=42368749;SVTYPE=DEL;SVLEN=-45 TR:VR 16:4 20:0 chr2 180465137 r_211_0 T T[chrX:17034166[ . PASS SVTYPE=BND;MATEID=r_211_1 TR:VR 31:5 35:0 chrX 17034166 r_211_1 G ]chr2:180465137]G . PASS SVTYPE=BND;MATEID=r_211_0 TR:VR 31:5 35:0 chr6 150147633 d_740 T . Too_small_size END=150147672;SVTYPE=DEL;SVLEN=-39 TR:VR 15:4 20:0 chr7 151520221 d_792 G . Too_small_size END=151520260;SVTYPE=DEL;SVLEN=-39 TR:VR 20:3 15:0 chr8 113039800 r_312 G . PASS END=113051584;SVTYPE=DEL;SVLEN=-11784 TR:VR 57:11 20:0 chr1 159229617 d_67 C . PASS END=159229753;SVTYPE=DEL;SVLEN=-136 TR:VR 17:4 19:0 chr11 119938414 r_60_0 C [chr9:133564041[A . PASS SVTYPE=BND;MATEID=r_60_1 TR:VR 52:4 40:0 chr9 133564041 r_60_1 A [chr11:119938414[A . PASS SVTYPE=BND;MATEID=r_60_0 TR:VR 52:4 40:0 chr2 132811210 d_504 T . PASS END=132812141;SVTYPE=DEL;SVLEN=-931 TR:VR 21:6 15:0 chr2 83874294 d_462 G . PASS END=83874352;SVTYPE=DEL;SVLEN=-58 TR:VR 21:3 12:0 chr4 163485120 d_660 A . Too_small_size END=163485165;SVTYPE=DEL;SVLEN=-45 TR:VR 16:6 24:0 chr6 152253558 i_359 A . PASS END=152253558;SVTYPE=INS;SVINSLEN=442;SVINSSEQ=GCTTTGGAGACTACATGTTTTAATTTTACTGTTCTGACTTTCACAAAATTATTATCAGAACAACGTCTGCAGGATGTCGCAAAGATTAAAAGACAATGAATATGAGAAAATATTTTGTGAATAAAAAAATGAAACTCAAATGTTTGTGATGGTTTTACTCTGTGGTTTTAAGAATGTAAGTGGTAATTTGTGCCTCGTGAAAATTCCATGTACTTCGTTCATGCTACATATTACTGTGTAGTGGTTTGTTTTTTTTTTTTTTTTTTTTTTTTTTTGCAAATCAAAACTCCACATGAAACTCTTGGCCCTAATGACATGTCTCTATTTTATAAAATCTTTCATGTTGGTTAAAAATAACATTCAATTAAAACTTATGTATTCTCAAAGAGTGCTTTTTATTAGGAATGAAAAATCAGCACTAAAAGTTTATCAGCAGCTTTTG TR:VR 14:6 26:0 chr8 113883525 d_816 A . PASS END=113883735;SVTYPE=DEL;SVLEN=-210 TR:VR 28:7 12:0 chr1 160006882 d_68 T . Too_small_size END=160006926;SVTYPE=DEL;SVLEN=-44 TR:VR 17:4 17:0 chr10 108189553 r_41_0 A [chr6:107403061[A . PASS SVTYPE=BND;MATEID=r_41_1 TR:VR 41:3 27:0 chr6 107403061 r_41_1 A [chr10:108189553[A . PASS SVTYPE=BND;MATEID=r_41_0 TR:VR 41:3 27:0 chr11 120874179 d_142 C . PASS END=120874881;SVTYPE=DEL;SVLEN=-702;SVINSLEN=1;SVINSSEQ=A TR:VR 23:3 13:0 chr12 37966747 i_49 A . PASS END=37966782;SVTYPE=INS;SVINSLEN=88;SVINSSEQ=TAGCTGAATTCTAGTTTTCACCCTGGGATATTTGCTTTTTTGCCATTGGCCTCAATGAGTTCCCAAATGTCCATATGCAGAATGGAGA TR:VR 17:4 8:0 chr16 30445461 d_323 C . PASS END=30445624;SVTYPE=DEL;SVLEN=-163 TR:VR 16:6 6:0 chr2 182369374 r_212_0 T T]chr2:185592419] . PASS SVTYPE=BND;MATEID=r_212_1 TR:VR 47:5 39:0 chr2 185592419 r_212_1 T T]chr2:182369374] . PASS SVTYPE=BND;MATEID=r_212_0 TR:VR 47:5 39:0 chr3 126840615 d_618 A . PASS END=126840678;SVTYPE=DEL;SVLEN=-63 TR:VR 17:6 14:0 chr4 165250237 r_271_0 C C]chr4:182343554] . PASS SVTYPE=BND;MATEID=r_271_1 TR:VR 33:4 29:0 chr4 182343554 r_271_1 T T]chr4:165250237] . PASS SVTYPE=BND;MATEID=r_271_0 TR:VR 33:4 29:0 chr7 154688075 d_793 A . PASS END=154689159;SVTYPE=DEL;SVLEN=-1084 TR:VR 13:10 15:0 chr8 114682821 d_817 C . Too_small_size END=114682856;SVTYPE=DEL;SVLEN=-35 TR:VR 28:16 17:0 chr8 59520498 d_803 T . PASS END=59520605;SVTYPE=DEL;SVLEN=-107 TR:VR 25:4 15:0 chr1 161369429 r_28 G . PASS END=161441070;SVTYPE=DUP;SVLEN=71641;SVINSLEN=4;SVINSSEQ=CCCC TR:VR 57:4 47:0 chr10 108316139 r_42_0 C CGGCCATCTTGGCTCCTC[chr5:13419020[ . PASS SVTYPE=BND;MATEID=r_42_1;SVINSLEN=17;SVINSSEQ=GGCCATCTTGGCTCCTC TR:VR 54:3 25:0 chr5 13419020 r_42_1 C ]chr10:108316139]GAGGAGCCAAGATGGCCC . PASS SVTYPE=BND;MATEID=r_42_0;SVINSLEN=17;SVINSSEQ=GAGGAGCCAAGATGGCC TR:VR 54:3 25:0 chr11 126038099 d_143 A . PASS END=126038286;SVTYPE=DEL;SVLEN=-187 TR:VR 18:5 22:0 chr12 37968121 i_50 T . PASS END=37968123;SVTYPE=INS;SVINSLEN=420;SVINSSEQ=TTCTTTCAGCAGTTTGGAAACACTGTATTTTGCAGAATCTTTGAATAAATATTTGGAGTGCTTTGAGGCCTATGGAGAAAAAGGAAGCAGTCAGAAAAAAACTAGATAGAAAATTTCTGATAAAATGCTTTGTGATGTTTGCATTCACCTCACAGAGTTAAACCTTTCTGTCATTTCAACAATTTGCAAACACTGTTTTTGTCTACTCTGCGAATAGACATTTGGGAGCTCATTGTGGCCAATGGTGAAAAAGCTAAAATCTCAGGATGAAAACTAGAAGGAAGCTAGCTGAGAAAATGGGAGCACATTGAGGTTTATGGTGAAAAAGGAAATATCTTTAGATAAAAACTAGAAAGAAGTTTTCTGACAAACTGCTTTGGGATGTGTGCATTCATCTACCTGAGTTACAGCTTCCTTTTG TR:VR 20:6 7:0 chr2 134387099 d_505 T . PASS END=134387356;SVTYPE=DEL;SVLEN=-257 TR:VR 15:3 19:0 chr2 182878558 r_213_0 G [chr2:194556039[T . PASS SVTYPE=BND;MATEID=r_213_1 TR:VR 56:10 37:0 chr2 194556039 r_213_1 T [chr2:182878558[T . PASS SVTYPE=BND;MATEID=r_213_0 TR:VR 56:10 37:0 chr4 165342695 d_661 T . PASS END=165342870;SVTYPE=DEL;SVLEN=-175;SVINSLEN=10;SVINSSEQ=ATATATATAT TR:VR 21:5 17:0 chr5 139494427 d_700 C . PASS END=139494501;SVTYPE=DEL;SVLEN=-74 TR:VR 10:7 6:0 chr6 152278466 d_741 T . Too_small_size END=152278505;SVTYPE=DEL;SVLEN=-39 TR:VR 13:7 15:0 chr8 116679746 d_818 G . PASS END=116679795;SVTYPE=DEL;SVLEN=-49 TR:VR 42:3 18:0 chr1 163039760 d_69 A . PASS END=163039934;SVTYPE=DEL;SVLEN=-174 TR:VR 15:8 9:0 chr12 37969928 i_51 A . PASS END=37969932;SVTYPE=INS;SVINSLEN=336;SVINSSEQ=TTTCAAAGAAGCTTTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAGACGGAGTCTCGCTCTGTCGCCCAGGCTGGACTGCGGACTGCAGTGGCGCAATCTCGGCTCACTGCAAGCTCCGCTTCCCGGGTTCAACGCCATTCTCCTGCCTCAGCCTCCCCAGTAGCTGGGACTACAGGCGCCCGCCACCGCGCCCGGCTAATTTTTTGTATTTTTAGTAGAGACGGGGTTTCACCTTGTTAGCCAGGATGGTCTCGATCTCCTGACCTCATGATCCACCCGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCGCGCCCGGCCCA TR:VR 21:3 6:0 chr18 53242619 r_136 A . PASS END=54433429;SVTYPE=DEL;SVLEN=-1190810 TR:VR 17:6 44:0 chr2 134432870 d_506 G . PASS END=134435587;SVTYPE=DEL;SVLEN=-2717 TR:VR 15:8 21:0 chr2 183020307 r_214 A . PASS END=194703587;SVTYPE=DEL;SVLEN=-11683280;SVINSLEN=38;SVINSSEQ=TACATATATAGAATATATATATATATTCTATATATATA TR:VR 58:6 31:0 chr3 135691968 d_619 G . PASS END=135692905;SVTYPE=DEL;SVLEN=-937 TR:VR 21:3 19:0 chr5 140298355 d_701 A . Too_small_size END=140298394;SVTYPE=DEL;SVLEN=-39 TR:VR 15:4 12:0 chr8 117245884 r_313 T . PASS END=117618112;SVTYPE=DEL;SVLEN=-372228 TR:VR 80:4 41:0 chr8 66624981 d_804 T . PASS END=66625373;SVTYPE=DEL;SVLEN=-392 TR:VR 20:4 12:0