##fileformat=VCFv4.3 ##fileDate=20230117 ##source=nanomonsv-0.5.0 ##reference=/projects/jfan_prj/jfan_prj/Nanopore_Testing/2021_nanopore_sv_testing/scratch/depth_testing/POG/COLO829/hg38_no_alt.fa ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##FILTER= ##FILTER= ##FILTER= ##FILTER= ##FILTER= ##FILTER= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##ALT= ##ALT= ##ALT= ##FORMAT= ##FORMAT= #CHROM POS ID REF ALT QUAL FILTER INFO FORMAT TUMOR CONTROL chr1 10414631 d_19 C . PASS END=10414782;SVTYPE=DEL;SVLEN=-151 TR:VR 30:13 12:0 chr10 130785835 i_139 A . PASS END=130785835;SVTYPE=INS;SVINSLEN=107;SVINSSEQ=GGCGAGGTCCACGCAGTGTCTCTCCCTCCAGGGACTTCCGTGCCGTTAGCTAGGAAGGAGGTCCACGCAGTGTCTCTCCTCCAGGGGCTTCCGTGCCCGTTGGCTGG TR:VR 33:4 20:0 chr14 21460578 r_122 C . PASS END=21470371;SVTYPE=DUP;SVLEN=9793 TR:VR 37:6 28:0 chr2 239273887 d_837 G . PASS END=239273966;SVTYPE=DEL;SVLEN=-79 TR:VR 12:8 10:0 chr4 105389655 d_1084 T . PASS END=105391659;SVTYPE=DEL;SVLEN=-2004 TR:VR 38:15 12:0 chr6 78476723 r_295 A . PASS END=78479789;SVTYPE=DUP;SVLEN=3066 TR:VR 35:3 22:0 chr9 14283100 d_1335 C . PASS END=14283387;SVTYPE=DEL;SVLEN=-287 TR:VR 29:3 12:0 chr1 105963303 r_21_0 A [chr2:22099201[GTATGTGTATATATGTATATA . Too_low_VAF SVTYPE=BND;MATEID=r_21_1;SVINSLEN=20;SVINSSEQ=GTATGTGTATATATGTATAT TR:VR 63:3 40:1 chr2 22099201 r_21_1 A [chr1:105963303[ATATACATATATACACATACA . Too_low_VAF SVTYPE=BND;MATEID=r_21_0;SVINSLEN=20;SVINSSEQ=ATATACATATATACACATAC TR:VR 63:3 40:1 chr16 16204284 d_497 G . PASS END=16205703;SVTYPE=DEL;SVLEN=-1419 TR:VR 14:7 13:0 chr21 5311778 i_631 A . Too_low_VAF END=5311778;SVTYPE=INS;SVINSLEN=493;SVINSSEQ=TGCTCTTTTTGGCCGGGCACGGTGGCTCACGTCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCAGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACAGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCAGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCACCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCATCTCAAAAAAAAAAAAAAAAAAAAAAAAAAGAAATGCTCTTTTTGTAGAATCTGAAAGTCAGCATTTGGAGCGCTTTGAGGACCATAGTGGAAAAGGAAATATCTTCACATAAAAACTAGACAGAAGAATTCTGACAGACATCTTTGTGATGTGCGTTAATCTCACAAGGTTGAGCCTTTCTTTTGATTGAACAGTTTGGAGAATC TR:VR 149:4 90:1 chr7 39062438 d_1229 T . PASS END=39062513;SVTYPE=DEL;SVLEN=-75 TR:VR 36:14 20:0 chr9 18076665 d_1336 T . Too_small_size END=18076705;SVTYPE=DEL;SVLEN=-40 TR:VR 36:17 19:0 chr1 109587571 r_22 A . PASS END=109604119;SVTYPE=DEL;SVLEN=-16548 TR:VR 67:22 22:0 chr1 35201145 r_10 A . PASS END=35307427;SVTYPE=DUP;SVLEN=106282 TR:VR 85:14 22:0 chr12 125525538 r_116 C . PASS END=125531593;SVTYPE=DUP;SVLEN=6055;SVINSLEN=5;SVINSSEQ=ACCCT TR:VR 61:10 20:0 chr3 116320872 d_1017 G . PASS END=116321846;SVTYPE=DEL;SVLEN=-974 TR:VR 37:8 21:0 chr4 113688121 r_255 A . PASS END=113692784;SVTYPE=DUP;SVLEN=4663 TR:VR 32:5 18:0 chr6 82252107 d_1198 G . Too_small_size END=82252146;SVTYPE=DEL;SVLEN=-39 TR:VR 25:9 19:0 chr1 3542790 r_1 G . PASS END=3864717;SVTYPE=DUP;SVLEN=321927 TR:VR 59:4 42:0 chr2 23993576 r_177 T . PASS END=103316891;SVTYPE=DUP;SVLEN=79323315 TR:VR 75:18 33:0 chr5 159466452 r_278_0 T T]chr5:159473197] . PASS SVTYPE=BND;MATEID=r_278_1 TR:VR 50:13 20:0 chr5 159473197 r_278_1 C C]chr5:159466452] . PASS SVTYPE=BND;MATEID=r_278_0 TR:VR 50:13 20:0 chr9 27605173 d_1337 A . PASS END=27605702;SVTYPE=DEL;SVLEN=-529 TR:VR 42:10 16:0 chr1 229144746 r_34 A . PASS END=229209128;SVTYPE=DUP;SVLEN=64382 TR:VR 98:9 29:0 chr11 1562190 r_66_0 A ]chr8:20246632]C . PASS SVTYPE=BND;MATEID=r_66_1 TR:VR 61:16 30:0 chr8 20246632 r_66_1 C C[chr11:1562190[ . PASS SVTYPE=BND;MATEID=r_66_0 TR:VR 61:16 30:0 chr13 110440302 r_119 G . PASS END=110454678;SVTYPE=DUP;SVLEN=14376 TR:VR 38:6 26:0 chr16 25552354 r_139_0 G ]chr9:84922512]T . PASS SVTYPE=BND;MATEID=r_139_1 TR:VR 79:14 37:0 chr9 84922512 r_139_1 T T[chr16:25552354[ . PASS SVTYPE=BND;MATEID=r_139_0 TR:VR 79:14 37:0 chr17 13214103 d_609 A . PASS END=13214162;SVTYPE=DEL;SVLEN=-59 TR:VR 20:10 10:0 chr17 73347 d_593 A . Too_small_size END=73390;SVTYPE=DEL;SVLEN=-43 TR:VR 11:8 6:0 chr2 105320147 r_191 A . PASS END=208410140;SVTYPE=DUP;SVLEN=103089993 TR:VR 47:10 29:0 chr3 119713602 d_1019 T . PASS END=119713844;SVTYPE=DEL;SVLEN=-242 TR:VR 35:14 18:0 chr4 121797531 r_256_0 C [chr4:121797858[C . PASS SVTYPE=BND;MATEID=r_256_1 TR:VR 47:12 15:0 chr4 121797858 r_256_1 C [chr4:121797531[C . PASS SVTYPE=BND;MATEID=r_256_0 TR:VR 47:12 15:0 chr5 159471699 r_279_0 T [chr5:171547580[GTAATCACAAGGGA . PASS SVTYPE=BND;MATEID=r_279_1;SVINSLEN=13;SVINSSEQ=GTAATCACAAGGG TR:VR 83:13 34:0 chr5 171547580 r_279_1 A [chr5:159471699[CCCTTGTGATTACA . PASS SVTYPE=BND;MATEID=r_279_0;SVINSLEN=13;SVINSSEQ=CCCTTGTGATTAC TR:VR 83:13 34:0 chr6 165406652 r_301 G . PASS END=165418487;SVTYPE=DEL;SVLEN=-11835 TR:VR 34:10 24:0 chr1 120477511 r_23_0 A A]chr1_KI270714v1_random:12951] . Too_low_VAF SVTYPE=BND;MATEID=r_23_1 TR:VR 70:3 33:0 chr1_KI270714v1_random 12951 r_23_1 G G]chr1:120477511] . Too_low_VAF SVTYPE=BND;MATEID=r_23_0 TR:VR 70:3 33:0 chr11 1569581 r_67_0 A A[chr8:20245549[ . PASS SVTYPE=BND;MATEID=r_67_1 TR:VR 59:11 31:0 chr8 20245549 r_67_1 G ]chr11:1569581]G . PASS SVTYPE=BND;MATEID=r_67_0 TR:VR 59:11 31:0 chr12 130782137 i_204 G . PASS END=130782142;SVTYPE=INS;SVINSLEN=428;SVINSSEQ=GTGGGGGCAGGTGTCGGCTCCATGGTCCCCTCCAGCTGTGAGGCGGGGGGCAGGTGTCAGGCTCCACGGTCCCCCTCCAGCTGTGAGGTGGGGGGCAGGTGTCGGCTCCATGGTCCCCTCCAGCTGTGAGGTGGGGGCAGGTGTCGGCTCCATGGTCCCCTCCAGCTGTGAGGTGGGGGCAGGTGTCGGCTCCATGGTCCCCTCCAGCTGTGAGGTGGGGGCAGGTGTCGGCTCCATGGTCCCCTCCAGCTGTGAGGTGGGGGCAGGTGTCGGCTCCATGGACCCCTCCAGCTGTGAGGTGGGGGCAGGTGTCGGCTCCATGGACCCCTCCAGCTGTGAGGTGGGGGCGGGTGTCGGCTCCATGGACCCCTCCAGCTGTGAGGTGGGGGCAGGTGTCGGCTCATGGACCCCTCCCGACGGTAAGCGGC TR:VR 34:5 20:0 chr17 15466607 r_156 C . PASS END=15475254;SVTYPE=DUP;SVLEN=8647 TR:VR 33:8 27:0 chr17 76708253 r_161 T . PASS END=76752688;SVTYPE=DEL;SVLEN=-44435 TR:VR 63:22 36:0 chr2 111661427 r_192_0 G ]chr3:111302725]G . Too_low_VAF SVTYPE=BND;MATEID=r_192_1 TR:VR 77:3 28:0 chr3 111302725 r_192_1 G G[chr2:111661427[ . Too_low_VAF SVTYPE=BND;MATEID=r_192_0 TR:VR 77:3 28:0 chr3 120290485 r_237 T . PASS END=120299744;SVTYPE=DUP;SVLEN=9259 TR:VR 40:10 16:0 chr4 123761186 d_1086 G . Too_small_size END=123761223;SVTYPE=DEL;SVLEN=-37 TR:VR 42:15 16:0 chr7 50649443 r_306 C . PASS END=50735085;SVTYPE=DUP;SVLEN=85642 TR:VR 84:14 46:0 chr8 59340074 d_1307 T . Too_small_size END=59340111;SVTYPE=DEL;SVLEN=-37 TR:VR 42:3 19:0 chr9 33257724 r_342 C . PASS END=33285066;SVTYPE=DEL;SVLEN=-27342 TR:VR 55:11 34:0 chr11 17435880 r_70_0 T [chr14:37684593[A . PASS SVTYPE=BND;MATEID=r_70_1 TR:VR 72:12 34:0 chr14 37684593 r_70_1 A [chr11:17435880[A . PASS SVTYPE=BND;MATEID=r_70_0 TR:VR 72:12 34:0 chr4 126431976 d_1087 T . Too_small_size END=126432014;SVTYPE=DEL;SVLEN=-38 TR:VR 42:14 18:0 chr5 164825396 r_280 A . PASS END=164856130;SVTYPE=DEL;SVLEN=-30734 TR:VR 54:20 29:0 chr7 5539264 r_303_0 C [chr7:5540232[GC . PASS SVTYPE=BND;MATEID=r_303_1;SVINSLEN=1;SVINSSEQ=G TR:VR 43:19 11:0 chr7 5540232 r_303_1 C [chr7:5539264[CC . PASS SVTYPE=BND;MATEID=r_303_0;SVINSLEN=1;SVINSSEQ=C TR:VR 43:19 11:0 chr8 59953941 r_328 T . PASS END=59961731;SVTYPE=DUP;SVLEN=7790 TR:VR 49:6 19:0 chr9 35560039 d_1338 G . Too_small_size END=35560078;SVTYPE=DEL;SVLEN=-39 TR:VR 26:6 14:0 chrUn_KI270442v1 69861 i_1163 A . Too_low_VAF END=69861;SVTYPE=INS;SVINSLEN=478;SVINSSEQ=GAATGGACAGGACTGGAATGGAATGGAATGCAGTGGAATGGAATGGAATAGAATAAAAGGATTGGAATTGACAGGCATCGAATGGGATCAAGTGGAATGTGGTTAAGTGGAGTGGAGGGGATGGAATGAAATGGAATGTCATGGAATGGAATTGAATGGAGTGGAGTGGAGTGGAATGGGGTGGAATGGAATGGAATGGGAAGGATTGGAATTTAACTGAGTGGAGTGGACTGGAGTGGAATGGAGAGGAATGGAATGGACAGGACTTGAATGGAATGGACTTGAATGGAATGGAATGGAATTGAATGGAGTTGAATGGAATGGAATCGAAAGGAATGGAATTGAATGTAATGGAATCGAATGGAATGGAATTGAATGGACTGAAATTGAATGAAATGGAATTGAATGGAATGGAATTGAAAGGAATGGAATCGAATGGAATGGAATCGAATGGAATGGAATCAAAGGAATTTAATTG TR:VR 127:4 74:1 chrX 101748046 r_371 A . PASS END=101749246;SVTYPE=DUP;SVLEN=1200 TR:VR 36:3 12:0 chr17 2029317 r_154 T . PASS END=2062494;SVTYPE=DUP;SVLEN=33177 TR:VR 42:7 28:0 chr17 78696798 d_626 T . PASS END=78697570;SVTYPE=DEL;SVLEN=-772 TR:VR 30:3 21:0 chr4 127935939 d_1088 G . Too_small_size END=127935980;SVTYPE=DEL;SVLEN=-41 TR:VR 38:17 18:0 chr5 53631307 r_268 G . PASS END=64577975;SVTYPE=DUP;SVLEN=10946668 TR:VR 75:13 35:0 chr7 5551034 r_304_0 A A]chr8:19543028] . PASS SVTYPE=BND;MATEID=r_304_1 TR:VR 80:19 32:0 chr8 19543028 r_304_1 C C]chr7:5551034] . PASS SVTYPE=BND;MATEID=r_304_0 TR:VR 80:19 32:0 chr8 60276585 r_329 A . PASS END=60642282;SVTYPE=DUP;SVLEN=365697 TR:VR 60:4 27:0 chrX 104837187 d_1509 A . PASS END=104841213;SVTYPE=DEL;SVLEN=-4026 TR:VR 29:13 19:0 chr14_GL000225v1_random 25861 i_248 G . Too_low_VAF END=25861;SVTYPE=INS;SVINSLEN=1307;SVINSSEQ=GTGTTGGGATGGTGTTGGGTCAGGGCAGAGCGGTGGCCTCTCTTTCGTGAGGGAACACCTGGCTGTCTATGGAGGGGCGTGTCTTTCCCGACCCCTCTGAACAGACTGACCAGCCTGGGATTCCTGCCTTCTAGGTCTAGGCCCGGTGAGAGACTCCACGCAGCGGAGAATCTGCACTTCAGGGCCTGGGCATGCCGGGGATCCAAAGCCGGCCCAGGTAGCAGCAGGTGATGGGCTGCCCTAGCTGCACACGTGCGGGTTTGCGGGCAGCTGCCTGGACTGTGGGAGCAGCCCGGGCAGAGTTCTCTATGCTTTCCACCACCACACCCCAGCCTGACCACCCCCCTCCCCACCAGCAGGTGACCCCACTCTTCAAAATGTGTCCTCCCCTGGACTCATTGGGTGGAACCCCGTCCCACGATCACCCCGGGCCCGAACGCTTTGTTCAGGTATTCTGACATCCCTCTGGCGGCTCACCTCCTCTGCGCCTCCCGCGCCCACTGTCGCCGGCTCCACTCTTCAGGGGCTTTGCACAGCCTCCCACCTGCCACCATGGAGAGCCTGGCAGGCGGAACGCAGACCTCTGGGCACCCTCTTTGCAGGCCCCTGGCTAGACCTGCGCTCATTGCGCACCCCAGCTGACATGCAAAGGGAGCCCGCTGGCCCTCTCTGTACCCTTGACTCCGTCTACCTTGAAATTCCAGCTGAGGCTCTCCCAAAACCTTCAACGCTGTTCAGTCAAAGCCTGGAGAATAGTTACATCTTCCTTGATCATCAGTTCAGAAATATGTCACAATGCCCCCTCCCTGCGGAGCCTAGAGAAGATGTGCATCATTTGGGTGATCAGTGAAGAGATATATCACAATGTCCCCTGTACAAAAAGCCTGGAAATGATTTCACATCACCTCGGGGATCAGTGCATAGGTATGTCACGGAAATCCCCAGTAGGCTGAACCTAGACAAGGGATACATCACTTAGGTGATCAGTGTAGAGATAATGTTACATGTCTCTCCACTGATCAGACAGAGTGATGGAACATCTCTCTAGTGATCTGCCTGGGGATAAGTCGTGCCAAACCTCCTGTGGGCAGAGAGGTGAAAAGTGTTTCTTCCCTGGGGTGATCAGTGCCTACTGGAGACAATGTGACATATCTGCACTGATCAAACAGGTGATGTCATGTCCCCCTTGTCCAAGGACAGTGGCTACAGGGGCATTGTGACATGTCACTGCACTGATCACACAGCTGATGTAACACTTATCTAGGCTCTGGCTACTGGGGGCTTGTACGACATCTCTGCACTGATCA TR:VR 137:5 75:0 chr19 13717602 r_171_0 A [chr2:96820019[G . PASS SVTYPE=BND;MATEID=r_171_1 TR:VR 63:5 34:0 chr2 96820019 r_171_1 G [chr19:13717602[G . PASS SVTYPE=BND;MATEID=r_171_0 TR:VR 63:5 34:0 chr3 125766909 r_238_0 G G]chr8:12013862] . PASS SVTYPE=BND;MATEID=r_238_1 TR:VR 31:3 24:0 chr8 12013862 r_238_1 C C]chr3:125766909] . PASS SVTYPE=BND;MATEID=r_238_0 TR:VR 31:3 24:0 chr5 168686292 r_281_0 C C]chr5:171580116] . PASS SVTYPE=BND;MATEID=r_281_1 TR:VR 81:18 29:0 chr5 171580116 r_281_1 T T]chr5:168686292] . PASS SVTYPE=BND;MATEID=r_281_0 TR:VR 81:18 29:0 chr6 97734249 d_1200 T . Too_small_size END=97734284;SVTYPE=DEL;SVLEN=-35 TR:VR 30:10 9:0 chr9 38226333 r_343 C . PASS END=38231502;SVTYPE=DEL;SVLEN=-5169 TR:VR 32:13 22:0 chrX 10499461 d_1492 A . PASS END=10499789;SVTYPE=DEL;SVLEN=-328;SVINSLEN=10;SVINSSEQ=AATGAAGTCA TR:VR 51:24 24:0 chr1 3693888 i_9 C . PASS END=3693888;SVTYPE=INS;SVINSLEN=501;SVINSSEQ=CCTCCTCCCGCAATCCCAGCCCTCTGCCTGCAGCCTCAGCCCCTCCTCCCGCAATCCCAGCCCTGCAGCCTCAGCCCCTCCTCCCGCAATCCCAGCCATGCAGCCTCAGCCCCTCCTCCCACAATCCCAGCCATGCAGCCTCAGCCCCTCCTCCCGCAATCCCAGCCCTGCAGCCTCAGCCCCTCCCTCCCGCAATCCCAGCCCTGCAGCCTCAGCCCCTCCTCCCGCAATCCCAGCCCTGCAGCCTCAGCCCCTCCTCCCGCAATCCCAGCCCTGCAGCCTCAGCCCCTCCTCCCGCAATCCCAGCCCTGCCAGCCTCCGCCCCTCCTCCCCACAATCCCAGCCATGCAGCCTCAGCCCCTCCTCCCGCAATCCCAGCCCTGCAGCCTCAGCCCCTCCTCCTGCAATCCCAGCCATGCAGCCTCCGCCCCTCCTCCCGCAATCCCACCCATGCAGCCTCCGCCCCTCCTCCCGCAATCCCAGCCATGCAGCCTCCAGCCC TR:VR 45:6 16:0 chr14 72431103 r_125 G . PASS END=73279063;SVTYPE=DUP;SVLEN=847960 TR:VR 43:3 49:0 chr19 16609500 d_663 C . PASS END=16609628;SVTYPE=DEL;SVLEN=-128 TR:VR 25:5 14:0 chr20 63553118 d_900 T . Too_small_size END=63553160;SVTYPE=DEL;SVLEN=-42 TR:VR 21:6 13:0 chr5 169886169 r_282 A . PASS END=170537739;SVTYPE=DEL;SVLEN=-651570 TR:VR 65:15 36:0 chr5 54097436 r_269 C . Too_low_VAF END=54106777;SVTYPE=DUP;SVLEN=9341 TR:VR 72:3 26:0 chrX 106910479 d_1510 G . PASS END=106911793;SVTYPE=DEL;SVLEN=-1314 TR:VR 31:5 11:0 chr1 14270903 r_6 G . PASS END=14608257;SVTYPE=DEL;SVLEN=-337354 TR:VR 41:12 26:0 chr1 23433848 d_23 G . PASS END=23434048;SVTYPE=DEL;SVLEN=-200 TR:VR 36:14 14:0 chr10 13676753 r_40 C . PASS END=13704375;SVTYPE=DUP;SVLEN=27622 TR:VR 72:12 32:0 chr13 113510113 r_120_0 C CCATCTGAAAA[chr14:78729138[ . PASS SVTYPE=BND;MATEID=r_120_1;SVINSLEN=10;SVINSSEQ=CATCTGAAAA TR:VR 43:3 42:0 chr14 78729138 r_120_1 T ]chr13:113510113]TTTTCAGATGT . PASS SVTYPE=BND;MATEID=r_120_0;SVINSLEN=10;SVINSSEQ=TTTTCAGATG TR:VR 43:3 42:0 chr14 78313616 d_354 G . PASS END=78313868;SVTYPE=DEL;SVLEN=-252 TR:VR 19:11 13:0 chr1 235016106 d_187 C . Too_small_size END=235016151;SVTYPE=DEL;SVLEN=-45 TR:VR 47:5 11:0 chr2 24410357 d_695 G . Too_small_size END=24410399;SVTYPE=DEL;SVLEN=-42 TR:VR 23:3 14:0 chr22 18894282 i_689 A . Too_low_VAF END=18894301;SVTYPE=INS;SVINSLEN=164;SVINSSEQ=TATATATCATGTATAATTTCTTTTTAGACAGAGCCTTGTCCTGTTGCACAGCGTGGAGTACAATGGCGCCATCTTTACTCACTGCAACATCTGCCTCACGGGTTCAAGCGATTGTCCTCCCTCAGCCTCCCAGGTAGCTGGGAGTACACCACACTGGGAGTTGG TR:VR 612:5 464:1 chr5 174777204 d_1166 T . Too_small_size END=174777249;SVTYPE=DEL;SVLEN=-45 TR:VR 34:18 21:0 chr9 40595749 i_1092 G . Too_low_VAF END=40595749;SVTYPE=INS;SVINSLEN=2483;SVINSSEQ=ATGATATGAAATGATGAGATGAATGATGAAATGAAATGATGAGATGAGATGATGAAATGAAATGGTGAGATGAAATGATGAGATGAAATGAAATAGTGAAATGAAATTGAAATAAAATCGAAATGAGATGAAATGATGAGATGATGAAATAAAATGATGAAATGATGAGATGTGATGAGATGAAATGATGAGATGAGATGAGAGATGACATGAAATAATGAAATGAAATTGAAATGAGATAAGATACGAGATGAGATGAAATGATGAGATGAAATGATGAAATGATGAGATAAGATGAAAAGAGTTGATGAGATGATGAGATGAAATGAGATGAAAAGATGAAATGATGAGATGAAATGAAATGATGAGATGAAATGAGGTGAAATGAAATTAGATGAAATGTAATGAGATGAAATGAAATGACATAATGAAATGAAATAATGAAATGAGATGAAATAAAATAATGAAATGATGAAATAATGAAATGAAAATGAAATGGAAATGATGAGATGAGAAGAAATGATGAGATGAAATGATGAAATGATGAGATGAGATAAAATGAGATGAAATGAGATGAGATGAAATGACATAATGAATGAAATGATGAAATGGAATAATGAAATGGAAATGATGAGCTGAGATGCAATGAGTTGAAATGAGATGAAATGATGAAATGATGAGATGAAATGATGAGATGAGATGTGATGAAATGATGACATGAAATGATGACATAAAATGAGATGAAATGAGATGTAATGATGGAATGAGATGAGATGAAATGAGATGAAATGATAGATGAGATAAAATGATATGAAATGATGAGATGAATGATGAGATGATGAGATGAATGATGAAATGAAATGATGAGATGAGATGATGAAATGAAATGGTGAGATGAAATGATGAGATGAAATGAAATAGTGAAATGAAATTGAAATAAAATCGAAATGAGATGAAATGATGAGATGATGAAATAAAATGATGAAATGAGATGTGATGAGATGAAATGATGACATGAAATGATGAGATGAGATGAGATGACATGAAATAATGAAATGAAATTGAAATGAGATAAGATACGAGATGAGATGAAATGATGAGATGAAATGATGAAATGATGAGATAAGATGAAAGGGTTGAGATGATGAGATGAAATGAGATGAAAAGATGAAATGATGAGATGAAATGAAATGATGAGATGAAATGAGGTGAAATGAAATTAGATGAAATGTAATGAGATGAAATGAAATGACATAATGAAATGAAATAATGAAATGAGATGAAATAAAATAATGAAATGATGAAATAATGAAATGAAAATGAAATGGAAATGATGAGATGAGAAGAAATGATGAGATGAAATGATGAAATGATGAGATGAGATAAAATGAGATGAAATGATGAGATGAGATGAAATATGATGAGTTGAAATGACATAATGAATGAAATGATGAAATGGAATAATGAAATGGAAATGATGAGCTGAGATGCAATGAGTTGAAATGAGATGAAATGATGAAATGATGAGATGCAATGATGAGATGAGATGTGATGAAATGATGATATGAAATGATGACATAAAATGAGATGAAATGAGATGTAATGATGGAATGAGATGAGATGAAATGAGATGAAATGATAGATGAGATAAAATGATGATATGAAATGATGAGATGAATGATGAGATGATGAGATGAATGATGAAATGAAATGATGAGATGAGATGATGAAATGAAATGGTGAGATGAAATGATGAGATGAAATGAAATAGTGAAATGAAATTGAAATAAAATCGAAATGAGAGATGAAATGATGAGATGATGAAATTGATGAAATGATGAGATGTGATGAGATGAAATGATGAGATGAGATGAGATGACATGAAATAATGAAATGAAATTGAAATGAGATAAGATACGAGATGAGATGAAATGATGAGATGAAATGATGAAATGATGAGATAAGATGAAAAGAGTTGATGAGATGATGAGATGAAATGAGATGAAAAGATGAAATGATGAGATGAAATGAAATGATGAGATGAAATGAGGTGAAATGAAATTAGATGAAATGTAATGAGATGAAATGAAATGACATAATGAAATGAAATAATGAAATGAGATGAAATAAAATAATGAAATGATGAAATAATGAAATGAAAATGAAATGGAAATGATGAGATAAGAAATGATGAGATGAAATGATGAAATGAGATGAGATAAAATGAGATGAAATGATGAGATGAGATGAAATATGAGATGAAATGACATAATGAATGAAATGATGAAACGGAATAATGAAATGGAAATGATGAGCTGAGATGCAATGAGTTGAAATGAGATGAAATGATGAAATGATGAGATGAAATGATGAGATGAGATGTGATGAAATGACATGAAATGATGACATAAAATGAGATGAAATGAGATGTAATGATGGAATGAGATGAGATGAAATGAGATGAAATGATAGATGAGATAAAA TR:VR 78:3 24:0 chrY 11322932 i_1261 A . Too_low_VAF END=11322932;SVTYPE=INS;SVINSLEN=858;SVINSSEQ=ACGGGCTGATATATGTCACAATATCCTTAGTAGGCAGAGACCAGGCAAGAGTTGGATCACATCGGGATAAGTGCAGAGATATGTCTCAATCCCCTGTGGGCACAGTCTAGACAAGAGTTACATCACCTCGGTTAACAGTGCAGAGAGATGTGTCAAAATGCCCCTGTAGGCAGAGCCTACACAAGTGTTACATCACTTAGGTGATCAGTGCAGAGATATGTCACAATACCCCCTGTAAGCAGAGCCTAGACAAGTGTTACATCACCTGGGTGATCAGTGCAGAGATATGTGACAAGGCCCCTTTAAGCAGAGCATAGGCAATATTTTACATCACCTGAGTGATCAGTGCAGAGATCTGTCAAAATGTCCCTTTGGGCAGAGCTTAGACCGGAGTTACATCACCTGGGTGATCAGTGCAGAGATATGTCTGAATGCCCCCATAGGCAAATCCAAGAGAAGTGTCCGTCATCTGGGTGATCATTGCAGAAATATGTGAGAATGCCCCCTGTAGGCAGAGCCTAGGGAAGAGTCCCAACACCTGGGTGATCAGTGCAGAGATGTTTCACAATGCCCCTGTAGGCAGTGCGAAAGCAAGGGTTACATCACCTAGATGATCAGTGCAGAGATATGTCACAAGGCCCCCTATAGGCAGAGCCTAGAAAAGACTTACATCACCTCGGTGATCAATGCAGTGATATGTCACTATGCCCTGTAGGCAGAGCCTAGTCAAGCATTACATCACCTCGGTGATCAGTGCAGAGATATGTCATAAAGCCCCCATACACAGAGCCAAGACAAGAGTCCCATCACCTGGGTGATCAGTGCAGAGATATGTCACAATACCCCCATAGGCAGATC TR:VR 548:5 286:1 chr1 235495442 r_35 T . PASS END=235501641;SVTYPE=DUP;SVLEN=6199 TR:VR 71:5 16:0 chr10 15445968 d_213 A . Too_small_size END=15446007;SVTYPE=DEL;SVLEN=-39 TR:VR 36:3 12:0 chr10 47334040 r_44 G . PASS END=48580440;SVTYPE=DUP;SVLEN=1246400 TR:VR 71:9 36:0 chr14 87222490 d_356 A . PASS END=87224065;SVTYPE=DEL;SVLEN=-1575 TR:VR 22:12 21:0 chrX 44835394 d_1497 C . PASS END=44848329;SVTYPE=DEL;SVLEN=-12935;SVINSLEN=101;SVINSSEQ=AAAAATTAGGGCTGGGCACGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCTGAGGCGGGCGGATCACAAGGTCAGGAGATCGAGACCATCCTGGC TR:VR 48:11 23:0 chr10 4891644 r_38 C . PASS END=4896253;SVTYPE=DUP;SVLEN=4609 TR:VR 46:13 18:0 chr2 1222469 i_442 T . PASS END=1222470;SVTYPE=INS;SVINSLEN=3896;SVINSSEQ=CGGTCGCTGTAGAGGAAAGCGAGGGCGCAGTGATGGAGGGCGTCTCCCTGTCCCTGCCTGCTGCTGGAGGTGCTGGATCGCTGTAGAGGAAAGTGGTGCAGTGATGGAGGGGCGTCTCCCTGTCCTGCCTGCTGCCGGAGGTGCTGGATGTAGCTGTAGAGGAAAGCGGCGCAGTGATGGAGGGCGCTTCCCTGTCCTGCCTGCTGCTGGAGGTGCTGGATCGCTGTAGAGGAAAGCGGCGCAGTGATGGAGGGCGTCTCCCCTGTCCTGCCTGCTGCTGGAGGTGCTGGATCGCTGTAGAGGAAAGCGGTGCAGTGATGGAGGGCGTCTCCCCGTCCTGCCTGCTGCTGGAGGTGCTGGATCGCTGTAGAGAAAGCGGCGCAGTGATGGAGGGCGTCTCCCTGTCCTGCCTGCTGGTGGAGGTGCTGGATCGCTGTAGGAGGAAAGCGGCGCAGTGATGAGGGGCGCCTCCCTGTCCTGCCTGCTGCTGGAGGTGCTGGATCGCTGTAGAGGAAAGTGGTGCAGTGATGGAGCGTGCGTCCCTGTCCTGCCTGCTGCTGGAGGTGCTGGATCGCTGTAGAGAAAGCGGCGCAGTGGATGGAGGGCGTCTCCCTGTCCTGCCTGCTGCTGGAGGTGCTGGATCGCTGTAGAGGAAAGTGGTGCAGTGATGGAGGGCGTCTCCCTGTCCTGCCTGCTGCTGGAGGTGCTGGATCGCTGCAGAGGAAAGCGGCGCAGTGATGGAGGGCGTCTCTCCTGTCCTGCCTGCTGGTGGAGGTGCTGGATCGCTGTAGAGGAAAGCGGCGCAGTGATGGAGGGCGTCTCCCTGTCCTGCCTGCTGCTGGAGGTGCTGGATCGGCTGTAGAGGAAAGTGGTGCAGTGATGGAGGGCGTCTCCTGTCCTGCTGCTGCTGGAGGTGCTGGATCGCTGGAGAGGAAAGCGGCGCAGTGATGGAGGGCGTCTCCCTGTCCTGCCTGCTGCTGGAGGTGCTGGATCGCTGTAGAGGAAAGTGGTGCAGTGATGGGTGGCGTCTCCCTGTCCTGCCTGCTGCTGGAGGTGCTGGATCGCTGTAGAGGAAAGCGGCGCAGTGATGGAGGGCGTCTCCCTGTCCTGCCTGCTGGTGGAGGTGCTGGATCGCTGTAGAGGAAAGCGTGCAAAGTGGTGGAGGGCGTCTCCCTGTCCTGCCTGCTGCTGGAGGTGCTGGATGCGCTGTAGAGGAAAGTGGTGCAGTGATGGAGGGCGTCTCCTGTCCTGCCTGCTGCTGGAGGTGCTGGATCGCTGTAGAGGAAAGCGGTGCAGTGATGGAGGGCGTCTCCTGTCCTGCCTGCTGCTGGAGGTGCTGGATCGCTGTAGAGGAAAGTGGTGCAGTGATGGAGGGCGTCTCCCTGTCCTGCCTGCTGCTGGAGGGGCTGGATCGCTGTAGAGGAAAGCGGTGCAGTGATGGAGGGCGTCTCCCTGTCCTGCCTGCTGCTGGAGGTGCTGGATCGCCTGTAGAGGAAAGTGGTGCAGTGATGGAGGGCGTCCCCCTGTCCTGCCTGCTGCTGGAGGTGCTGGATCGCTGTAGAGGAAAGTGGTGCAGTGATGGAGGGGCGGTCTCCCTGTCCTGCCTGCTGCTGGAGGTGCTGGATCGCTGTAGAGGAAAGCGGTGCAGTGATGGAGGGCGTCTCCCTGTCCTGCCTGCTGCTGGAGGTGCTGGATCGCTGTAGAGGAAAGTGGTGCAGTGATGGAGGGCGTCTCCCTGTCCTGCCTGCTGCTGGAGGGGCTGGATCGCTGTAGAGGAAAGTGGTGCAGTGATGGAGGGCGTCTCCCTGTCCTGCCTGCTGCTGGAGGTGCTGGATCACTGTAGAGGAAGGCAGTGCAGTGATGGAGTGCGTCCCCCTGTCCTGCCTGCTGCTGGAGGTGCTGGATCGCTGTAGAGGAAAGCGGCGCAGTGATGGAGGCGTCTCCCTGTCCTGCCTGCTGCTGGAGGTGCTGGATCGCTGTAGAGAAAGCGGCGCAGTGATGGAGGGCGTCTCCTGTCCTGCCTGCTGCTGGAAGGGCTGGATCAGCTGTAGAGGAAAGTGGTGCAGTGATGGAGGGCGTCTCCTGTCCTGCCTGCTGCTGGAGGGCTGGATCGCTGTAGAGGAAAGTGGTGCAGTGATGGAGGGCGTCTCCCTGTCCTGCCTGCTGCTGGAGGTGCTGGATCACTGTAGAGGAAGGCAGTGCAGTGATGGAGTGCGTCCCCCTGTCCTGCCTGCTGCTGGAGGTGCTGGATCGCTGTAGAGGAAAGCTGTAGAGGAAAGCAGCGTAGAGGAAAGGGCAAGAGGATGGAGGGCGTCTCCCTGTCCTGCCTGCTGCTGGAGGTGCTGGATCGCTGTAGAGGAAAGTGGGTGCAGTGATGGAGGGCGTCTCCCTGTCCTGCCTGCTGGTGGAAGTGCTGGATCGCTGTAGAGGAAAGTGGTGCAGTGATGGAGGGCGTCTCCCTGTCCTGCCTGCTGCTGGAGGGGCTGGATCGCTGTAGAGGAAAGTGGTGCAGTGATGGAGGGCGTCTCCCTGTCCTGCCTGCTGCTGGAGGTGCTGGATCCGCTGTAGAGGAAGGCAGTGCAGTGATGGAGCGCGTCTCCCTGTCCTGCCTGCTGCTGGAGGTGCTGGATCGCTGTAGAGGAAAGTGGTGCAGTGATGGAGTGCGTCCCCCTGTCCTGCCTGCTGCTGGAGGTGCTGGATCGCTGTAGAGGAAAGCGGCGCAGTGATGGAGGGCGTCTCCCTGTCCTGCCTGCTGCTGGAGGTGCTGGATCGCTGTAGAGGAAAGTGGTGCAGTGATGGAGGGCGTCTCCCTGTCCTGCCTGCTGGTGGAAGTGCTCGGATCGCTGTAGAGGAAAGTGGTGCAGTGATGGAGGGCGTCTCCCTGTCCTGCCTGCTGCTGGAGGGGCTGGATCGCTGTAGAGGAAAGTGGTGCAGTGATGGAGGGCGTCTCCCTGTCCTGCCTGCTGCTGGAGGTGCTGGATCGCTGTAGAGGAAGGCAGTGCAGTGATGGAGTGCGTCTCCCTGTCCTGCCTGCTGCTGGAGGTGCTGGATCGCTGTAGAGGAAAGTGTGCAGTGATGGAGTGCGTTCCCCTGTCCTGCCTGCTGCTGGAGGTGCTGGATCGCTGTAGAGGAAAGCGGCGCAGTGATGGGAGGGCGTCTCTCTGTCCTGCCTGCTGCTGGAGGTGCTGGATCGCTGTAGAGGAAAGTGGTGCAGTGATGGGAGGGCGTCCCTGTCCTGCCTGCTGGTGGAAGTGCTGGATCGCTGTAGAGGAAAGTGGTGCAGTGATGGGAGGGGCGTCTCCCTGTCCTGCCTGCTGCTGGAGGAGCTGGATCGCTGTAGAGGAAAGTGGTGCAGTGATGGAGGGCGTCTCCCTGTCCTGCCTGCTGCTGGAGGTGCTGGATCGCTGTAGAGGAAGGCAGTGCAGTGATGGAGTGCGTCTCCCTGTCCTGCCTGCTGCTGGAGGTGCTGGATCGCTGTAGAGGAAAGTGGTGCAGTGATGGAGGGCGTCTCCCTGTCCTGCCTGCTGCTGGAGTGTGCTGGATCGCTGTAGAGGAAAGCGGGCGCAGTGATGGGAGGGCGTCTCCCTGTCCTGCCTGCTGCTGGAGGTGCTGGATCGCTGTAGAGGAAAGCAGTGCAGTGATGGAGGGCGTCTCCCCGTCCTGCCTGCTGGTGGAAGTGCTGGATCGCTGTAGAGGAAAGCGGTGCAGTGATGGAGGGTATCTCCCTGTCCTGCCTGCTGCTGGAGGTGCTGGATCGCTGTGCAGAGGAAAGCGGCGCAGTGATGGAGGGCGTCTCCCTGTCCTGCCTGCTGCTGGGAGGTGCTGGATCGCTGAGAGAGAAGCGGCGTGCAGTGATGAGGGCGTCTCCCTGTCCTGCCTGCTGCTGGAAGTGCTTG TR:VR 35:7 9:0 chr2 25531813 r_178 T . PASS END=26036006;SVTYPE=DUP;SVLEN=504193 TR:VR 100:12 33:0 chr20 30241689 r_211 T . PASS END=30250444;SVTYPE=DUP;SVLEN=8755 TR:VR 47:3 24:0 chr3 198173338 i_784 T . Too_low_VAF END=198173338;SVTYPE=INS;SVINSLEN=62;SVINSSEQ=AAGAGTTAAGGTTAAGGGTTAAGGTTAGGGTTAAGGTTAAGGTTATTGTTAAGGGTGAGGGT TR:VR 362:6 296:0 chr5 176271329 d_1167 C . PASS END=176271381;SVTYPE=DEL;SVLEN=-52 TR:VR 36:14 15:0 chr7 57887487 r_307_0 T ]chrUn_KI270442v1:173357]TGCCCTATGGTGGAAACGGAAACATCTTCAAATTAATACTACACAGAAGCATTCTGAGAAACTTCTTTGTGATGAGTGCATTCATCACACAGAGTTGAACCTTTCTTTTGATTGAGCAGTTTTGAAACACTCTCTTTGTGATATGAAGATATTTCCATTTCTACCATAGGCCACAAAGTATTCAAATCTGTCCACCTGCAGATTCTACAAAAAGAGTGTTTCCGAACTCCTCAATCAAAAGAAAGGTTCAACTCTGTGAGATGAACGCAAACGG . Too_low_VAF SVTYPE=BND;MATEID=r_307_1;SVINSLEN=273;SVINSSEQ=TGCCCTATGGTGGAAACGGAAACATCTTCAAATTAATACTACACAGAAGCATTCTGAGAAACTTCTTTGTGATGAGTGCATTCATCACACAGAGTTGAACCTTTCTTTTGATTGAGCAGTTTTGAAACACTCTCTTTGTGATATGAAGATATTTCCATTTCTACCATAGGCCACAAAGTATTCAAATCTGTCCACCTGCAGATTCTACAAAAAGAGTGTTTCCGAACTCCTCAATCAAAAGAAAGGTTCAACTCTGTGAGATGAACGCAAACG TR:VR 222:4 131:1 chrUn_KI270442v1 173357 r_307_1 G GCGTTTGCGTTCATCTCACAGAGTTGAACCTTTCTTTTGATTGAGGAGTTCGGAAACACTCTTTTTGTAGAATCTGCAGGTGGACAGATTTGAATACTTTGTGGCCTATGGTAGAAATGGAAATATCTTCATATCACAAAGAGAGTGTTTCAAAACTGCTCAATCAAAAGAAAGGTTCAACTCTGTGTGATGAATGCACTCATCACAAAGAAGTTTCTCAGAATGCTTCTGTGTAGTATTAATTTGAAGATGTTTCCGTTTCCACCATAGGGCA[chr7:57887487[ . Too_low_VAF SVTYPE=BND;MATEID=r_307_0;SVINSLEN=273;SVINSSEQ=CGTTTGCGTTCATCTCACAGAGTTGAACCTTTCTTTTGATTGAGGAGTTCGGAAACACTCTTTTTGTAGAATCTGCAGGTGGACAGATTTGAATACTTTGTGGCCTATGGTAGAAATGGAAATATCTTCATATCACAAAGAGAGTGTTTCAAAACTGCTCAATCAAAAGAAAGGTTCAACTCTGTGTGATGAATGCACTCATCACAAAGAAGTTTCTCAGAATGCTTCTGTGTAGTATTAATTTGAAGATGTTTCCGTTTCCACCATAGGGCA TR:VR 222:4 131:1 chrX 4632407 r_363 C . PASS END=4633195;SVTYPE=DEL;SVLEN=-788 TR:VR 39:13 13:0 chr2 270455 d_687 T . PASS END=270627;SVTYPE=DEL;SVLEN=-172 TR:VR 27:3 19:0 chr20 30358925 r_212_0 T T[chr22:12589850[ . Too_low_VAF SVTYPE=BND;MATEID=r_212_1 TR:VR 134:5 80:1 chr22 12589850 r_212_1 C ]chr20:30358925]C . Too_low_VAF SVTYPE=BND;MATEID=r_212_0 TR:VR 134:5 80:1 chr4 149577321 d_1090 A . Too_small_size END=149577366;SVTYPE=DEL;SVLEN=-45 TR:VR 20:12 21:0 chr7 5849891 r_305 G . PASS END=5856571;SVTYPE=DUP;SVLEN=6680 TR:VR 47:3 15:0 chr8 84914120 d_1308 A . Too_small_size END=84914156;SVTYPE=DEL;SVLEN=-36 TR:VR 38:12 24:0 chr1 3694277 i_14 C . PASS END=3694277;SVTYPE=INS;SVINSLEN=220;SVINSSEQ=CCTCCTCCTGCAATCCCCACCCATGCAGCCTTCAGCCCACTCCTCCCGCAATCCCAGCCCTGCAGCCTCAGCCCCTCCTCCTGCAATCCCAGCCCTGCAGACCCTCAGCCCTCCTCCTGCAATCCCAGCCATGCAGCCTCAGCCCCTCCTCCCGCAATCCCAGCCCTGCACAGCCTCCACCCCTCCTCCCGCAATCCCAGCCATGCAGCCTCAGCCCCTC TR:VR 45:3 15:0 chr10 53039724 r_45 G . PASS END=53165655;SVTYPE=DEL;SVLEN=-125931 TR:VR 46:11 32:0 chr11 23545692 d_276 A . Too_small_size END=23545735;SVTYPE=DEL;SVLEN=-43 TR:VR 41:14 18:0 chr20 30522022 d_863 G . PASS END=30527065;SVTYPE=DEL;SVLEN=-5043 TR:VR 35:9 18:0 chr3 132119267 r_239 T . PASS END=132124126;SVTYPE=DUP;SVLEN=4859 TR:VR 51:9 21:0 chr4 156728100 d_1091 T . PASS END=156728147;SVTYPE=DEL;SVLEN=-47 TR:VR 20:10 17:0 chrX 48629804 d_1498 T . PASS END=48630762;SVTYPE=DEL;SVLEN=-958 TR:VR 53:18 23:0 chr11 24574843 d_277 G . Too_small_size END=24574881;SVTYPE=DEL;SVLEN=-38 TR:VR 48:10 24:0 chr3 138305577 r_240 C . Too_low_VAF END=138973676;SVTYPE=DUP;SVLEN=668099 TR:VR 73:3 41:0 chr5 56243320 d_1156 G . Too_small_size END=56243355;SVTYPE=DEL;SVLEN=-35 TR:VR 55:15 18:0 chrX 115466812 r_372 T . PASS END=115656438;SVTYPE=DUP;SVLEN=189626 TR:VR 74:10 26:0 chr1 3694456 i_16 C . PASS END=3694456;SVTYPE=INS;SVINSLEN=426;SVINSSEQ=CTCCCCGAAATCCCAGCCCTGCAGCCTCAGCCCCTCCTCCCGCAATCCCAGCCATGCAGCCTCAGCCCCCTCCTCCCGCAATCCCAGCCATGCAGCCTCAGCCCCCTCCTCCCACAATCCCACCCATGCAGCCTCAGCCCCTCCTCCTGCAATCCCACCCATGCATCTTCCAGCCCCTCCTCCCGCAATCCCAGCCCTGCAGCCTCAGCCCCTCCTCCTGCAATCCCAGCCCTGCAGCCTCAGCCCCTCCTCCTGCAATCCCAGCCATGCAGCCTCAGCCCCTCCTCCCGCAATCCCAGCCCTGCAGCCTCCACCCCTCCTCCCGCAATCCCAGCCATGCAGCCTCAGCCCCTCCTCCTGCAATCCCAGCCATGCATCTTCAGCCTCCTCCTCCCGCAATCCCAGCCCTGCAGCCTCCACCCCTCC TR:VR 44:7 15:0 chr10 20092528 r_41 G . PASS END=20957401;SVTYPE=DUP;SVLEN=864873;SVINSLEN=2;SVINSSEQ=AA TR:VR 81:26 36:0 chr11 26968593 r_71_0 C [chr4:119263486[A . Too_low_VAF SVTYPE=BND;MATEID=r_71_1 TR:VR 102:3 29:0 chr4 119263486 r_71_1 A [chr11:26968593[A . Too_low_VAF SVTYPE=BND;MATEID=r_71_0 TR:VR 102:3 29:0 chr16 34572957 d_505 T . Too_low_VAF END=34573047;SVTYPE=DEL;SVLEN=-90;SVINSLEN=70;SVINSSEQ=CCTCGAATGGAATCTAATGAAATCACCGAATGGACACGAATGGAATCATCCTGTGGATTTGAGTGGAATC TR:VR 150:3 65:0 chr4 16570477 r_247 A . PASS END=16582262;SVTYPE=DUP;SVLEN=11785 TR:VR 45:6 23:0 chr5 17812375 i_874 T . PASS END=17812375;SVTYPE=INS;SVINSLEN=475;SVINSSEQ=ATATAAATATATATATATAAATATAAATATATATATAAATATATAAATATAATATATATATATATATATATATATATATAAATATATATATAAATATATATATAAATATATATATATATAAATATATATATAAATATATATAAATATATATATAAATATATATATAAATATATATATAAATATATATATAAATATATATATAAATATATATATATATATATATATATATATATATATATATATATATATATATATAAATATATATATAAATATATATATATATATATATATATATATATATATATAAATATATATATATATATATATATATATATATATATATATATAGGATATCACTATAAATATATTGCCCAGCCTGGTTTTGAACTATAATATCAACTAATCCTCCTATATATATATATATATATATATTATATATAATATGTACATATCTATTATATATATATAATATAAA TR:VR 32:4 15:0 chr7 107545234 d_1249 C . PASS END=107545285;SVTYPE=DEL;SVLEN=-51 TR:VR 40:10 25:0 chr7 158089640 d_1282 C . PASS END=158089960;SVTYPE=DEL;SVLEN=-320;SVINSLEN=48;SVINSSEQ=TTCCCCTGACGAAAGGGGGAGTCTTCACACACATCCTTCCTCCCTGAT TR:VR 69:4 15:0 chr8 87165092 d_1309 T . PASS END=87165171;SVTYPE=DEL;SVLEN=-79 TR:VR 24:5 18:0 chrUn_KI270442v1 94956 i_1166 T . Too_low_VAF END=94956;SVTYPE=INS;SVINSLEN=287;SVINSSEQ=GCAATGCAATGGAATGGAATGGAATGGAATCAACTTGAATGGAATGGAATGGAATGGAATGGATTGGAATCGAATGGAATGGAATGGAATTGAATGCATTTGAATTGAATGGACCTGGAAGAGAATTGGAATGGAATGGAATGGAATGGAATGGAAGTGGCCTCGAATGCAATGGAATGGAATGGAATCATCTTCGAATGGAATGCAGTTGAATGGAATGGTAATCGAATGGAATGGAATGGACTAGAATGGAATGGAATGGAATTTGAGAGGAATGGAATGGAACG TR:VR 168:3 85:1 chrX 50440114 r_367 A . PASS END=51114809;SVTYPE=DUP;SVLEN=674695 TR:VR 83:17 35:0 chr1 241481421 d_188 G . PASS END=241481516;SVTYPE=DEL;SVLEN=-95;SVINSLEN=6;SVINSSEQ=ATTTTA TR:VR 52:7 26:0 chr10 21785381 d_214 C . PASS END=21785581;SVTYPE=DEL;SVLEN=-200 TR:VR 31:3 17:0 chr10 56891593 r_46_0 T T]chr9:121671675] . PASS SVTYPE=BND;MATEID=r_46_1 TR:VR 93:15 37:0 chr9 121671675 r_46_1 T T]chr10:56891593] . PASS SVTYPE=BND;MATEID=r_46_0 TR:VR 93:15 37:0 chr11 27515738 r_72_0 A A]chr4:119263672] . Too_low_VAF SVTYPE=BND;MATEID=r_72_1 TR:VR 99:3 28:0 chr4 119263672 r_72_1 A A]chr11:27515738] . Too_low_VAF SVTYPE=BND;MATEID=r_72_0 TR:VR 99:3 28:0 chr19 21697956 r_173_0 A AC]chr3:77788795] . PASS SVTYPE=BND;MATEID=r_173_1;SVINSLEN=1;SVINSSEQ=C TR:VR 106:8 54:0 chr3 77788795 r_173_1 T TG]chr19:21697956] . PASS SVTYPE=BND;MATEID=r_173_0;SVINSLEN=1;SVINSSEQ=G TR:VR 106:8 54:0 chr22 28171061 r_224 T . PASS END=28177454;SVTYPE=DUP;SVLEN=6393 TR:VR 31:4 30:0 chr4 52199459 i_817 C . PASS END=52199478;SVTYPE=INS;SVINSLEN=368;SVINSSEQ=GTGTGTGCTCAGTGTGGTGTGGTGGTGTGTGTGTGGTGTGTGTGGTGTATGTGTGGGGGTGTGTGTGTGTGTGGGGGTGTGTGGTGTGTGTGGGGGTGTGTGGTGTGTGTGGTGTGTGTGGTGTGTTGTGTGTGGTGTGTGTGTGTGTGTGTGGTGTGTGGGGGTGTGCATATGTGTGGGGTGTGTGTGTGGTGTGTGGTGTGTGTGTGTGTGTGTGTGTGTGGTGTGTGTGTGTGTGTGTGTGTTGTGTGTGGGGTGTGTGTGGTGTGGGTGTGTGGGGGGTGTGTGTGGTGTGTAGTGTATGTGTTTGGTGTGTGGTGTGTGTGGTGTGTGGGGAGTGTGTGGTGTGTGTGGTGTGTGTGTGTGTG TR:VR 58:4 19:0 chr5 58899407 r_270 C . PASS END=58904729;SVTYPE=DUP;SVLEN=5322 TR:VR 64:7 22:0 chr7 107650645 r_311 A . PASS END=107853549;SVTYPE=DUP;SVLEN=202904 TR:VR 108:17 40:0 chr8 142760792 i_1074 C . PASS END=142760792;SVTYPE=INS;SVINSLEN=99;SVINSSEQ=TAATTCAGTGGTTTCTCACGCACCATACAATCCACCCGTTTATAGTGGGTAATTCAGTGGTTTGTCATGCAGCATACAATCCACCCGTTTACAGTGGGT TR:VR 51:3 8:0 chr8 92692958 r_331 C . PASS END=92697816;SVTYPE=DUP;SVLEN=4858 TR:VR 43:6 21:0 chrX 55488472 d_1500 A . PASS END=55489378;SVTYPE=DEL;SVLEN=-906 TR:VR 33:16 18:0 chr1 241963933 d_189 A . Too_small_size END=241963969;SVTYPE=DEL;SVLEN=-36 TR:VR 43:11 15:0 chr11 29274845 d_278 T . Too_small_size END=29274886;SVTYPE=DEL;SVLEN=-41 TR:VR 39:9 13:0 chr12 1417227 r_95 A . PASS END=1431820;SVTYPE=DUP;SVLEN=14593;SVINSLEN=3;SVINSSEQ=CAC TR:VR 69:7 24:0 chr2 124554350 d_824 A . PASS END=124554515;SVTYPE=DEL;SVLEN=-165;SVINSLEN=2;SVINSSEQ=TT TR:VR 35:3 17:0 chr3 143120492 d_1025 T . PASS END=143120792;SVTYPE=DEL;SVLEN=-300 TR:VR 40:9 13:0 chr4 169692871 r_257 C . PASS END=169742884;SVTYPE=DUP;SVLEN=50013 TR:VR 39:3 43:0 chr9 4361431 r_339 C . PASS END=4846984;SVTYPE=DUP;SVLEN=485553 TR:VR 116:26 41:0 chr12 15245 r_93_0 T [chr12:17918[G . PASS SVTYPE=BND;MATEID=r_93_1 TR:VR 53:9 44:0 chr12 17918 r_93_1 G [chr12:15245[G . PASS SVTYPE=BND;MATEID=r_93_0 TR:VR 53:9 44:0 chr14 92741441 r_126 A . PASS END=93656427;SVTYPE=DUP;SVLEN=914986 TR:VR 53:18 48:0 chr16 34589466 d_506 G . Too_low_VAF;Too_small_size END=34589486;SVTYPE=DEL;SVLEN=-20 TR:VR 585:4 210:0 chr17 21972767 d_612 G . Too_low_VAF END=21972813;SVTYPE=INS;SVINSLEN=46;SVINSSEQ=AATGGTACTGTATTAACCTGAGAGGAATGGAGTGGAATGGAATGGA TR:VR 217:4 94:1 chr2 91508670 i_556 G . PASS END=91508671;SVTYPE=INS;SVINSLEN=310;SVINSSEQ=CTGGCTTGGCTCACTGGCTGGGTGGCTGGCCTGGCTAGTTGGGCGGCTTGGCTGGCTTGGCTGGCTGGGCGGCTTGGCTGGCTTGGCTGGCTGGCTTGGCTGGCTTGGGTGGCTTGGCTGGAGTGGCTTGGCTGGGAGGCTTGGCTGGCTGGCTGGCTGGCTGGCCGGTGGCTTGGCCGGTTGGCTGGCCGAGTGGCTTGGCCAGCTTGGCTGGCCGAGTGGATTGGCTGGGCCAGTGCCCATGGCCGGCTGGCTTGGCAGGATGGATGGCATGTTGGCTGGCTTGGCTGCCTTGGCTGGCTGGGTGGCT TR:VR 197:10 82:1 chr22 38927873 i_694 A . PASS END=38927873;SVTYPE=INS;SVINSLEN=90;SVINSSEQ=GGACCCAACACGGCGCAACCGCTCAGCCCGAGAGGCGGGTGTATTGTCGTCAACCAACATCTGAATGACGCTTGCAAACTGAATTTGCCG TR:VR 27:15 26:0 chr3 29486117 d_996 A . PASS END=29486191;SVTYPE=DEL;SVLEN=-74;SVINSLEN=2;SVINSSEQ=TG TR:VR 31:19 20:0 chr4 56261397 d_1079 A . Too_small_size END=56261440;SVTYPE=DEL;SVLEN=-43 TR:VR 70:12 13:0 chr5 59839254 r_271_0 C CAATCTGCTAT]chr5:59869737] . PASS SVTYPE=BND;MATEID=r_271_1;SVINSLEN=10;SVINSSEQ=AATCTGCTAT TR:VR 77:6 35:0 chr5 59869737 r_271_1 T TATAGCAGATT]chr5:59839254] . PASS SVTYPE=BND;MATEID=r_271_0;SVINSLEN=10;SVINSSEQ=ATAGCAGATT TR:VR 77:6 35:0 chr8 98587690 r_332 C . PASS END=99125928;SVTYPE=DUP;SVLEN=538238 TR:VR 152:26 42:0 chr9 4474745 r_340 G . PASS END=6150236;SVTYPE=DUP;SVLEN=1675491 TR:VR 110:12 31:0 chr1 242589006 d_191 G . Too_small_size END=242589042;SVTYPE=DEL;SVLEN=-36 TR:VR 27:9 18:0 chr1 43434931 r_11_0 T ]chr13:39406036]G . PASS SVTYPE=BND;MATEID=r_11_1 TR:VR 81:22 46:0 chr13 39406036 r_11_1 G G[chr1:43434931[ . PASS SVTYPE=BND;MATEID=r_11_0 TR:VR 81:22 46:0 chr10 61596762 r_47_0 T ]chr3:17612113]A . PASS SVTYPE=BND;MATEID=r_47_1 TR:VR 65:13 40:0 chr3 17612113 r_47_1 A A[chr10:61596762[ . PASS SVTYPE=BND;MATEID=r_47_0 TR:VR 65:13 40:0 chr13 24029195 d_323 C . Too_small_size END=24029234;SVTYPE=DEL;SVLEN=-39 TR:VR 19:9 23:0 chr14 97741989 d_364 T . PASS END=97742042;SVTYPE=DEL;SVLEN=-53 TR:VR 25:6 23:0 chr17 220676 i_334 C . PASS END=220676;SVTYPE=INS;SVINSLEN=546;SVINSSEQ=ACATCAGCTCTCAGGCCTCCACTGGGGTGAGACAATAGACCCAAGCACATCAGCTCTCAGGCCTCCACTCACTGAGACAATAGACCCAAGAACAACAGCTCTGAGGCCTCCACTCACTGAGACAATAGGCCCAAGCACAACAGCTCTGAGGCCTCCACTCACTGAGACAACAGACCCAAGAACAACATTGGCTCTGAGGCCTCCACTCACTGAGACAGTAGGCCCAAGCACAACAGCTCTGAGGCCTCCACTCACTGAGACAACAGACCCAAGAACAACAGCTCTGAGGCCTCCACTCACTGAGACAATAGGCCCAAGCACATCAGCTCTGAGTCCCTCCACTCACTGAGACAATAGACCCAAGCACAACAGCTCTGAGGTCTCCACTCACTGAGACAATAGACCCAAGCACATCAGCTCTGAGGCCTCCACTCGTGAGACAATAGACCCAAGCACAACAGCTCTGAGGGCTCCACTCCACTGAGACAATAGACCCAAGTGCATCAGCTCTGAGGGCTCCAGTCACTGAGACAATAGACCCAAGAA TR:VR 23:4 8:0 chr2 126574550 r_194 G . PASS END=126584765;SVTYPE=DUP;SVLEN=10215 TR:VR 48:12 26:0 chr2 32916624 r_179_0 G GACGGGGGGGGGGGGGGACGGGGGGG[chr9:137502686[ . Too_low_VAF SVTYPE=BND;MATEID=r_179_1;SVINSLEN=25;SVINSSEQ=ACGGGGGGGGGGGGGGACGGGGGGG TR:VR 283:9 207:0 chr9 137502686 r_179_1 G ]chr2:32916624]CCCCCCCGTCCCCCCCCCCCCCCGTG . Too_low_VAF SVTYPE=BND;MATEID=r_179_0;SVINSLEN=25;SVINSSEQ=CCCCCCCGTCCCCCCCCCCCCCCGT TR:VR 283:9 207:0 chr20 8657590 r_206 G . PASS END=8892652;SVTYPE=DEL;SVLEN=-235062 TR:VR 70:29 43:0 chr22 38927962 i_695 C . PASS END=38927962;SVTYPE=INS;SVINSLEN=93;SVINSSEQ=GGACCCAACACGGCGCAACCGCTCAGCCCGAGAGGCGGGGTGTATTGTCGTCAACCAACATCTGAATGACGCTTGCAAACTGAATTTGCCGTG TR:VR 27:15 26:0 chr4 182025306 d_1093 G . PASS END=182025802;SVTYPE=DEL;SVLEN=-496;SVINSLEN=1;SVINSSEQ=A TR:VR 21:13 21:0 chr4 57131934 r_250_0 T T]chr4:121819884] . PASS SVTYPE=BND;MATEID=r_250_1 TR:VR 86:22 41:0 chr4 121819884 r_250_1 A A]chr4:57131934] . PASS SVTYPE=BND;MATEID=r_250_0 TR:VR 86:22 41:0 chr5 59840898 r_272_0 A [chr5:59914760[GA . PASS SVTYPE=BND;MATEID=r_272_1;SVINSLEN=1;SVINSSEQ=G TR:VR 76:13 34:0 chr5 59914760 r_272_1 A [chr5:59840898[CA . PASS SVTYPE=BND;MATEID=r_272_0;SVINSLEN=1;SVINSSEQ=C TR:VR 76:13 34:0 chr7 112133655 r_312 G . PASS END=112412202;SVTYPE=DUP;SVLEN=278547 TR:VR 132:10 33:0 chr1 2436603 r_0_0 C C]chr9:136608511] . Too_low_VAF SVTYPE=BND;MATEID=r_0_1 TR:VR 123:3 48:0 chr9 136608511 r_0_1 G G]chr1:2436603] . Too_low_VAF SVTYPE=BND;MATEID=r_0_0 TR:VR 123:3 48:0 chr1 43512661 r_12_0 T TGATACTCTGGTGAGCTCAGTTACAATACAGAATAA[chr13:39406083[ . PASS SVTYPE=BND;MATEID=r_12_1;SVINSLEN=35;SVINSSEQ=GATACTCTGGTGAGCTCAGTTACAATACAGAATAA TR:VR 93:14 32:0 chr13 39406083 r_12_1 T ]chr1:43512661]TTATTCTGTATTGTAACTGAGCTCACCAGAGTATCT . PASS SVTYPE=BND;MATEID=r_12_0;SVINSLEN=35;SVINSSEQ=TTATTCTGTATTGTAACTGAGCTCACCAGAGTATC TR:VR 93:14 32:0 chr10 63773470 r_48_0 T T]chr7:69683349] . PASS SVTYPE=BND;MATEID=r_48_1 TR:VR 49:10 24:0 chr7 69683349 r_48_1 T T]chr10:63773470] . PASS SVTYPE=BND;MATEID=r_48_0 TR:VR 49:10 24:0 chr11 32340364 r_73 G . PASS END=32343022;SVTYPE=DUP;SVLEN=2658 TR:VR 53:5 15:0 chr8 99701878 d_1311 T . PASS END=99702239;SVTYPE=DEL;SVLEN=-361 TR:VR 56:11 17:0 chr9 476495 r_338 T . Too_low_VAF END=1160689;SVTYPE=DUP;SVLEN=684194 TR:VR 67:3 31:0 chrX 62547345 d_1501 G . PASS END=62547392;SVTYPE=DEL;SVLEN=-47 TR:VR 33:9 14:0 chr11 34663918 r_74_0 A ]chr2:88699928]T . PASS SVTYPE=BND;MATEID=r_74_1 TR:VR 82:8 49:0 chr2 88699928 r_74_1 T T[chr11:34663918[ . PASS SVTYPE=BND;MATEID=r_74_0 TR:VR 82:8 49:0 chr13 30765056 d_324 A . PASS END=30765130;SVTYPE=DEL;SVLEN=-74 TR:VR 16:8 21:0 chr2 41401070 r_180 T . PASS END=41429615;SVTYPE=DUP;SVLEN=28545 TR:VR 55:3 23:0 chr4 1844031 d_1051 C . PASS END=1844970;SVTYPE=DEL;SVLEN=-939 TR:VR 19:10 27:0 chr4 59526888 d_1080 T . PASS END=59526946;SVTYPE=DEL;SVLEN=-58 TR:VR 48:16 28:0 chr5 180771349 d_1173 C . PASS END=180777883;SVTYPE=DEL;SVLEN=-6534 TR:VR 26:21 16:0 chr1 48977873 d_25 A . PASS END=48978011;SVTYPE=DEL;SVLEN=-138 TR:VR 39:3 20:0 chr11 34869449 r_75_0 A A]chr2:96820281] . PASS SVTYPE=BND;MATEID=r_75_1 TR:VR 68:5 32:0 chr2 96820281 r_75_1 A A]chr11:34869449] . PASS SVTYPE=BND;MATEID=r_75_0 TR:VR 68:5 32:0 chr2 130668709 d_825 A . PASS END=130669219;SVTYPE=DEL;SVLEN=-510 TR:VR 27:6 4:0 chr2 47670125 r_181 C . PASS END=47717816;SVTYPE=DEL;SVLEN=-47691;SVINSLEN=3;SVINSSEQ=TCA TR:VR 55:3 36:0 chr3 41223718 d_997 G . PASS END=41226445;SVTYPE=DEL;SVLEN=-2727 TR:VR 23:13 13:0 chr4 63203071 i_819 A . PASS END=63203072;SVTYPE=INS;SVINSLEN=475;SVINSSEQ=GTAGGTATATAGTATATATATACTATATATAGGTATATATATATATATACTATATATAGTAGGTATATAGTATATATATACTATATATAGTAGGTATATAGTATATATATATTATATATAGTAGGTATAGTATATATATACTATATATATATAGGTATATAGTATATATACTATGGGGGGGGGGGGGGTAGGTATATAGTATATATATACTATATATATAGTATATATATACCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCTAGTAGGTATATAGTATATATATACTATATATAGTAGGTATATAGTATATATATACTATATATAGTAGGTATATAGTATATATATACTATATATATGTAGATATAGGAT TR:VR 64:5 28:0 chr5 6390941 d_1112 G . PASS END=6392003;SVTYPE=DEL;SVLEN=-1062 TR:VR 38:13 9:0 chr9 106353879 d_1349 G . PASS END=106354366;SVTYPE=DEL;SVLEN=-487 TR:VR 30:19 24:0 chr1 244663180 r_37 C . PASS END=244672312;SVTYPE=DUP;SVLEN=9132 TR:VR 71:7 19:0 chr1 53776640 r_13_0 T [chr1:66930295[G . PASS SVTYPE=BND;MATEID=r_13_1 TR:VR 85:12 33:0 chr1 66930295 r_13_1 G [chr1:53776640[G . PASS SVTYPE=BND;MATEID=r_13_0 TR:VR 85:12 33:0 chr13 42128495 r_117 T . PASS END=42135630;SVTYPE=DUP;SVLEN=7135 TR:VR 36:9 17:0 chr2 133259147 r_195 C . PASS END=133266812;SVTYPE=DUP;SVLEN=7665 TR:VR 46:3 24:0 chr2 48484463 d_697 G . PASS END=48484532;SVTYPE=DEL;SVLEN=-69 TR:VR 34:10 24:0 chr3 4583609 r_226 A . PASS END=4974623;SVTYPE=DUP;SVLEN=391014 TR:VR 78:6 36:0 chrX 66002947 d_1502 A . PASS END=66002994;SVTYPE=DEL;SVLEN=-47 TR:VR 28:10 15:0 chr1 245589164 d_193 T . PASS END=245589214;SVTYPE=DEL;SVLEN=-50 TR:VR 34:11 24:0 chr1 53780012 r_14_0 A A]chr1:66934914] . PASS SVTYPE=BND;MATEID=r_14_1 TR:VR 88:13 33:0 chr1 66934914 r_14_1 T T]chr1:53780012] . PASS SVTYPE=BND;MATEID=r_14_0 TR:VR 88:13 33:0 chr10 72951635 r_50_0 A [chr7:151071390[C . PASS SVTYPE=BND;MATEID=r_50_1 TR:VR 68:10 34:0 chr7 151071390 r_50_1 C [chr10:72951635[C . PASS SVTYPE=BND;MATEID=r_50_0 TR:VR 68:10 34:0 chr16 36026783 d_511 T . PASS END=36026908;SVTYPE=INS;SVINSLEN=126;SVINSSEQ=CCAAAACTTCTTTGTGACGTGTGCATTATTCTCACAGAGTTGAACTTTTCTTTTGATGGAGGAGATTTGAAACACTCTTTTGGCAGAATCTGCAAGTGGATATTTTGTTCCCTTTGTGGCTTATTT TR:VR 48:6 13:0 chr2 53755977 r_182 A . PASS END=62703248;SVTYPE=DEL;SVLEN=-8947271 TR:VR 80:15 32:0 chr3 157005846 d_1029 A . PASS END=157005924;SVTYPE=DEL;SVLEN=-78 TR:VR 35:3 14:0 chr3 46834942 r_228_0 T T]chr8:122757067] . Too_low_VAF SVTYPE=BND;MATEID=r_228_1 TR:VR 77:3 32:0 chr8 122757067 r_228_1 G G]chr3:46834942] . Too_low_VAF SVTYPE=BND;MATEID=r_228_0 TR:VR 77:3 32:0 chr4 67715161 d_1081 G . PASS END=67715223;SVTYPE=DEL;SVLEN=-62 TR:VR 40:21 17:0 chr9 108553091 d_1350 T . PASS END=108553148;SVTYPE=DEL;SVLEN=-57 TR:VR 42:15 13:0 chr10 73113202 r_51_0 A A[chr3:157171490[ . PASS SVTYPE=BND;MATEID=r_51_1 TR:VR 72:12 34:0 chr3 157171490 r_51_1 A ]chr10:73113202]A . PASS SVTYPE=BND;MATEID=r_51_0 TR:VR 72:12 34:0 chr16 36121663 r_141_0 A ]chr2:90402511]ACTCGAATGGAATCATCATCTGATGGAATTCAATGGAATCATCGAATGGACACAAATGGAATCATCATCAAATGGAATCCATTGGAACGATCGAATGGAATCGCATGGAATTATCAC . Too_low_VAF SVTYPE=BND;MATEID=r_141_1;SVINSLEN=116;SVINSSEQ=ACTCGAATGGAATCATCATCTGATGGAATTCAATGGAATCATCGAATGGACACAAATGGAATCATCATCAAATGGAATCCATTGGAACGATCGAATGGAATCGCATGGAATTATCA TR:VR 424:12 234:1 chr2 90402511 r_141_1 C CTGATAATTCCATGCGATTCCATTCGATCGTTCCAATGGATTCCATTTGATGATGATTCCATTTGTGTCCATTCGATGATTCCATTGAATTCCATCAGATGATGATTCCATTCGAGT[chr16:36121663[ . Too_low_VAF SVTYPE=BND;MATEID=r_141_0;SVINSLEN=116;SVINSSEQ=TGATAATTCCATGCGATTCCATTCGATCGTTCCAATGGATTCCATTTGATGATGATTCCATTTGTGTCCATTCGATGATTCCATTGAATTCCATCAGATGATGATTCCATTCGAGT TR:VR 424:12 234:1 chr2 54579587 r_183 A . PASS END=54648849;SVTYPE=DUP;SVLEN=69262 TR:VR 57:12 24:0 chr3 53736356 r_229_0 A [chr7:72813619[C . PASS SVTYPE=BND;MATEID=r_229_1 TR:VR 44:12 41:0 chr7 72813619 r_229_1 C [chr3:53736356[C . PASS SVTYPE=BND;MATEID=r_229_0 TR:VR 44:12 41:0 chr9 110509028 d_1351 T . PASS END=110510085;SVTYPE=DEL;SVLEN=-1057 TR:VR 35:25 10:0 chr1 149474942 r_27_0 C C]chr6:107996965] . PASS SVTYPE=BND;MATEID=r_27_1 TR:VR 144:35 43:0 chr6 107996965 r_27_1 T T]chr1:149474942] . PASS SVTYPE=BND;MATEID=r_27_0 TR:VR 144:35 43:0 chr12 33004999 d_302 T . Too_small_size END=33005041;SVTYPE=DEL;SVLEN=-42 TR:VR 36:27 16:0 chr16 4161809 r_138_0 A [chr16:11526499[G . PASS SVTYPE=BND;MATEID=r_138_1 TR:VR 28:3 25:0 chr16 11526499 r_138_1 G [chr16:4161809[G . PASS SVTYPE=BND;MATEID=r_138_0 TR:VR 28:3 25:0 chr2 56567405 d_698 A . Too_small_size END=56567447;SVTYPE=DEL;SVLEN=-42 TR:VR 21:16 15:0 chr4 74440976 r_251 T . PASS END=74888719;SVTYPE=DUP;SVLEN=447743 TR:VR 81:17 41:0 chr5 7269771 r_261_0 A A]chr5:59799312] . PASS SVTYPE=BND;MATEID=r_261_1 TR:VR 94:5 32:0 chr5 59799312 r_261_1 T T]chr5:7269771] . PASS SVTYPE=BND;MATEID=r_261_0 TR:VR 94:5 32:0 chr7 64765790 r_308 G . PASS END=64777552;SVTYPE=DUP;SVLEN=11762 TR:VR 59:8 25:0 chrX 139597373 r_373 G . PASS END=139601985;SVTYPE=DUP;SVLEN=4612 TR:VR 48:10 17:0 chrX 69438468 d_1503 G . Too_low_VAF END=69454333;SVTYPE=DEL;SVLEN=-15865 TR:VR 68:3 25:0 chr1 150384539 r_28_0 T [chr20:6088270[G . PASS SVTYPE=BND;MATEID=r_28_1 TR:VR 64:11 35:0 chr20 6088270 r_28_1 G [chr1:150384539[G . PASS SVTYPE=BND;MATEID=r_28_0 TR:VR 64:11 35:0 chr1 246232650 i_84 G . PASS END=246232650;SVTYPE=INS;SVINSLEN=289;SVINSSEQ=AGGAAGCCTCCTTCAATCCACACTGTGATGAACATATACCACACAGAGGAGAAGCATATATTTCAATTCACACTGTGATGAACATATACCACAGAGGAGAAGCACTCCTTCAATTCACACTGTGATGAACATATACACCACAGAGGAGAAGCACTCCTTCAATTCACACTGTGATGAACATATACCACACAGAGGAGAAGCACTCCTTCAATTCACACTGCTGATGAACATATACCACAGAGGAGAAACGCTCCTCAATTCACCTTGTGATGAACATATACCACACAAA TR:VR 49:6 12:0 chr1 58331084 r_15 C . Too_low_VAF END=58375605;SVTYPE=DEL;SVLEN=-44521 TR:VR 67:3 42:0 chr12 33009478 r_98_0 T [chr12:33009487[CACACAA . PASS SVTYPE=BND;MATEID=r_98_1;SVINSLEN=6;SVINSSEQ=CACACA TR:VR 51:16 17:0 chr12 33009487 r_98_1 A [chr12:33009478[TGTGTGA . PASS SVTYPE=BND;MATEID=r_98_0;SVINSLEN=6;SVINSSEQ=TGTGTG TR:VR 51:16 17:0 chr2 59313574 d_699 A . Too_small_size END=59313609;SVTYPE=DEL;SVLEN=-35 TR:VR 39:17 19:0 chr4 77331559 d_1082 C . PASS END=77331871;SVTYPE=DEL;SVLEN=-312 TR:VR 30:13 18:0 chr7 67998743 d_1238 A . Too_small_size END=67998785;SVTYPE=DEL;SVLEN=-42 TR:VR 32:4 18:0 chr9 118488565 d_1353 A . Too_small_size END=118488603;SVTYPE=DEL;SVLEN=-38 TR:VR 34:5 24:0 chr1 150499045 d_175 G . PASS END=150499185;SVTYPE=DEL;SVLEN=-140 TR:VR 36:3 18:0 chr12 33127503 r_99_0 G [chr4:180955667[T . PASS SVTYPE=BND;MATEID=r_99_1 TR:VR 69:5 35:1 chr4 180955667 r_99_1 T [chr12:33127503[T . PASS SVTYPE=BND;MATEID=r_99_0 TR:VR 69:5 35:1 chr13 59483518 d_328 T . Too_small_size END=59483562;SVTYPE=DEL;SVLEN=-44 TR:VR 31:4 15:0 chr15 101897098 r_136_0 A [chr15:101901848[A . PASS SVTYPE=BND;MATEID=r_136_1 TR:VR 60:20 18:0 chr15 101901848 r_136_1 A [chr15:101897098[A . PASS SVTYPE=BND;MATEID=r_136_0 TR:VR 60:20 18:0 chr2 64765656 d_700 A . PASS END=64765704;SVTYPE=DEL;SVLEN=-48 TR:VR 38:13 22:0 chr4 77398817 r_252 C . PASS END=77720908;SVTYPE=DUP;SVLEN=322091 TR:VR 89:14 24:0 chr6 32486909 r_286 T . PASS END=32510887;SVTYPE=DEL;SVLEN=-23978;SVINSLEN=1;SVINSSEQ=C TR:VR 22:4 10:0 chr9 121668948 r_354_0 C [chr9:121669990[C . PASS SVTYPE=BND;MATEID=r_354_1 TR:VR 63:12 15:0 chr9 121669990 r_354_1 C [chr9:121668948[C . PASS SVTYPE=BND;MATEID=r_354_0 TR:VR 63:12 15:0 chr1 61482917 d_26 A . PASS END=61482972;SVTYPE=DEL;SVLEN=-55 TR:VR 39:18 17:0 chr11 46024414 r_77 A . PASS END=46025458;SVTYPE=DUP;SVLEN=1044 TR:VR 18:3 14:0 chr12 33127522 r_100_0 C CTT]chr4:180957136] . PASS SVTYPE=BND;MATEID=r_100_1;SVINSLEN=2;SVINSSEQ=TT TR:VR 70:5 35:1 chr4 180957136 r_100_1 C CAA]chr12:33127522] . PASS SVTYPE=BND;MATEID=r_100_0;SVINSLEN=2;SVINSSEQ=AA TR:VR 70:5 35:1 chr15 101908637 r_137_0 T TTTCCTAAGCTCTTCTGGCATCCATGGCTTATAATGCACTATCTGCTGTCAAACTTATTGAGGATCCT]chr2:179257997] . PASS SVTYPE=BND;MATEID=r_137_1;SVINSLEN=67;SVINSSEQ=TTCCTAAGCTCTTCTGGCATCCATGGCTTATAATGCACTATCTGCTGTCAAACTTATTGAGGATCCT TR:VR 94:11 30:0 chr2 179257997 r_137_1 A AAGGATCCTCAATAAGTTTGACAGCAGATAGTGCATTATAAGCCATGGATGCCAGAAGAGCTTAGGAA]chr15:101908637] . PASS SVTYPE=BND;MATEID=r_137_0;SVINSLEN=67;SVINSSEQ=AGGATCCTCAATAAGTTTGACAGCAGATAGTGCATTATAAGCCATGGATGCCAGAAGAGCTTAGGAA TR:VR 94:11 30:0 chr19 31674507 d_669 G . PASS END=31675531;SVTYPE=DEL;SVLEN=-1024 TR:VR 45:18 20:0 chr2 66664963 r_184 T . PASS END=66669118;SVTYPE=DUP;SVLEN=4155 TR:VR 50:3 16:0 chr3 158404983 r_242 G . PASS END=158831429;SVTYPE=DUP;SVLEN=426446 TR:VR 81:13 32:0 chr7 72834423 r_309_0 T [chr7:72922389[A . PASS SVTYPE=BND;MATEID=r_309_1 TR:VR 64:7 41:0 chr7 72922389 r_309_1 A [chr7:72834423[A . PASS SVTYPE=BND;MATEID=r_309_0 TR:VR 64:7 41:0 chr10 77324510 d_255 G . Too_small_size END=77324555;SVTYPE=DEL;SVLEN=-45 TR:VR 20:9 22:0 chr11 46268218 i_160 C . PASS END=46268218;SVTYPE=INS;SVINSLEN=537;SVINSSEQ=TCCATCCTGCTGCAGATCATCTTGGTTTCTGACCTTGGTGCCTGACTCCCTCACCCAGCCTTGCCTTATCTTCCACATGAGACTCTTGGAACCATCATTTTTTGATACAATCTCAGCTTCCCTTTAAGCCATAATTTTAGCCTTTCCTTCTGCTTGGTTGCCTCAAGCTGCCTTAGTGAAGTTTGACCTGGGGCCTCCTCCCGCATAGCACGAAATTGGCTGGAATTGCCTGTGATCTGGGAGCCAACACTGACGGCTACTAGCTTTGTTGTTCTTAGGAGTCCCTTTAAGAAGTCCTGGCCCAGATTAAATGCACCCCATAACCGCTTCCTGCTGGCAAGCTCTGTGACTCTCCCTGGTGGCAGCACATACTAACACAACAGCACCTTGCTTCTGAAAGGGAAAGGGAGGAAAAGGAAGGCTCAGAGCCATGGTAAATTAAGACAGATTGCATTCCCGAAACTGGGTTGAGACCTGCTGAGTGTGCAGAGAGGTACAGCAAATGAGAGTTTTGTTTTTAATTTGAGACAACACGAT TR:VR 21:15 13:0 chr12 33411790 r_101_0 T T[chr21:43686664[ . PASS SVTYPE=BND;MATEID=r_101_1 TR:VR 85:14 37:0 chr21 43686664 r_101_1 G ]chr12:33411790]G . PASS SVTYPE=BND;MATEID=r_101_0 TR:VR 85:14 37:0 chr13 63749407 d_329 A . Too_small_size END=63749453;SVTYPE=DEL;SVLEN=-46 TR:VR 25:14 18:0 chr3 6388602 i_721 T . PASS END=6388603;SVTYPE=INS;SVINSLEN=75;SVINSSEQ=GCACCACAGCACGCTCACCGGCTCATGTTGCTTTCAGGATCACCCTTGAATGAGCAGGAAGGCTGCTGTCCATGC TR:VR 39:6 22:0 chr4 90576987 r_253 C . PASS END=90612070;SVTYPE=DUP;SVLEN=35083 TR:VR 73:10 32:0 chr5 78607719 d_1158 C . Too_small_size END=78607762;SVTYPE=DEL;SVLEN=-43 TR:VR 27:16 13:0 chr7 127128400 r_313 C . PASS END=127129188;SVTYPE=DUP;SVLEN=788 TR:VR 51:6 19:0 chrX 79672797 d_1505 A . PASS END=79672862;SVTYPE=DEL;SVLEN=-65 TR:VR 32:11 13:0 chr1 66926069 r_16_0 A [chr20:31982413[T . PASS SVTYPE=BND;MATEID=r_16_1 TR:VR 63:11 33:0 chr20 31982413 r_16_1 T [chr1:66926069[T . PASS SVTYPE=BND;MATEID=r_16_0 TR:VR 63:11 33:0 chr10 817979 d_209 G . PASS END=818926;SVTYPE=DEL;SVLEN=-947 TR:VR 37:8 24:0 chr13 67937195 r_118 G . PASS END=67941554;SVTYPE=DEL;SVLEN=-4359 TR:VR 21:12 23:0 chr3 66714773 d_998 G . PASS END=66714908;SVTYPE=DEL;SVLEN=-135 TR:VR 36:10 30:0 chr5 21012219 d_1131 G . Too_small_size END=21012256;SVTYPE=DEL;SVLEN=-37 TR:VR 39:14 14:0 chr7 127128921 r_314 T . PASS END=127134543;SVTYPE=DUP;SVLEN=5622 TR:VR 56:3 20:0 chr9 83201335 r_345 G . PASS END=83251831;SVTYPE=DUP;SVLEN=50496 TR:VR 76:8 33:0 chrX 80996943 d_1506 C . PASS END=80997204;SVTYPE=DEL;SVLEN=-261 TR:VR 39:6 14:0 chr1 66926215 r_17_0 C C]chr20:32676684] . PASS SVTYPE=BND;MATEID=r_17_1 TR:VR 76:12 33:0 chr20 32676684 r_17_1 G G]chr1:66926215] . PASS SVTYPE=BND;MATEID=r_17_0 TR:VR 76:12 33:0 chr10 85361559 r_52_0 A AAAAAAAAAAA[chr6:19792884[ . PASS SVTYPE=BND;MATEID=r_52_1;SVINSLEN=10;SVINSSEQ=AAAAAAAAAA TR:VR 67:8 47:1 chr6 19792884 r_52_1 A ]chr10:85361559]TTTTTTTTTTA . PASS SVTYPE=BND;MATEID=r_52_0;SVINSLEN=10;SVINSSEQ=TTTTTTTTTT TR:VR 67:8 47:1 chr16 48510487 r_142 A . PASS END=48670069;SVTYPE=DUP;SVLEN=159582 TR:VR 82:15 34:0 chr2 90392949 i_525 G . Too_low_VAF END=90392949;SVTYPE=INS;SVINSLEN=275;SVINSSEQ=AATGGAATTGAATGGAATCGTCTTTGAGTGGAATCTAAAGGAATCACCGAATGGAGCTCCAATCATCGGATGGAATCGAGTGGAATCATCGAATGTCGTCGAATGCAATCATCATCGAATGGAATTGAATGGAATGATCGAATGGAAACGAATGGAATCATAGAATGGACTCGAATGCAATCATCATTGAATGGAATAAAATGGAATCATCATGGAATGGAATTGAATGGGATCATCGAATGGACTCGAAAGGAATTATGCTCGAATGGAATCTA TR:VR 623:5 332:1 chr3 172205375 d_1031 C . PASS END=172205575;SVTYPE=DEL;SVLEN=-200 TR:VR 39:21 19:0 chr4 95450065 r_254 A . PASS END=95461358;SVTYPE=DUP;SVLEN=11293 TR:VR 43:6 17:0 chr7 76715153 r_310 T . PASS END=76738558;SVTYPE=DUP;SVLEN=23405 TR:VR 65:9 37:0 chr9 84094128 r_346 C . PASS END=84129945;SVTYPE=DUP;SVLEN=35817 TR:VR 71:7 36:0 chr1 15660887 r_7 C . PASS END=15666621;SVTYPE=DUP;SVLEN=5734 TR:VR 38:3 27:0 chr1 67466580 r_18 A . PASS END=67474678;SVTYPE=DEL;SVLEN=-8098;SVINSLEN=6;SVINSSEQ=GCTGGG TR:VR 44:13 14:0 chr16 50225288 r_143 A . PASS END=50246613;SVTYPE=DUP;SVLEN=21325 TR:VR 86:8 21:0 chr2 73186418 r_185 A . PASS END=73213192;SVTYPE=DUP;SVLEN=26774 TR:VR 102:13 29:0 chr3 172401007 d_1032 C . PASS END=172401127;SVTYPE=INS;SVINSLEN=137;SVINSSEQ=CAGCTCCCAGGTTCAAGTGATTCCCCTGCCTCAGCCTCCCAAGTAGCTGGGGATTACAGGCACTCGCCACCATGCCCGGATAATTTTTTTTTTTTTTTTTGAGTTGGAGTCTTGCTCTGTCGCCCAGGCTGGAGTGC TR:VR 56:11 13:0 chr5 22322896 r_264 T . PASS END=22657230;SVTYPE=DUP;SVLEN=334334 TR:VR 76:17 34:0 chr9 84917306 r_347_0 T [chr9:84918733[G . PASS SVTYPE=BND;MATEID=r_347_1 TR:VR 60:16 24:0 chr9 84918733 r_347_1 G [chr9:84917306[G . PASS SVTYPE=BND;MATEID=r_347_0 TR:VR 60:16 24:0 chr13 78935201 d_331 C . PASS END=78936206;SVTYPE=DEL;SVLEN=-1005 TR:VR 34:15 17:0 chr3 172478892 r_243 A . Too_low_VAF END=172644116;SVTYPE=DUP;SVLEN=165224 TR:VR 99:3 44:0 chr3 72572757 r_232_0 A A]chr8:120758260] . PASS SVTYPE=BND;MATEID=r_232_1 TR:VR 112:12 42:0 chr8 120758260 r_232_1 T T]chr3:72572757] . PASS SVTYPE=BND;MATEID=r_232_0 TR:VR 112:12 42:0 chr7 158395279 i_1005 A . PASS END=158395282;SVTYPE=INS;SVINSLEN=472;SVINSSEQ=GCCGCGAGGGTGAGGGGCGAGGGTGAGGGGCGAGGGGCGAGGGGGCGGCGCGAGGGGCCAGGGGCCAGGGCGAGTGGGCGAGGGGCAGGCGCGAGGGGCGAGGGGCCAGGGGCGAGGGCGTGAGGGGTGAGGGGCGAGGGGTGAGGGCGAGGGGCCAGGGCGAGGGGCGAGGGGCGCAGGCGCGAGGGGCGAGGGGCGAGGGCGAGGCGCGAGGGGCGAGGGGCCAGGGCGAGGCGCGAGGGGTGAGGGGTGAGGGGGTGCGGGCGAGGGGCGCAGGCGCGAGGGGCCAGGGGGCGAGGGCGAGGGCGCGAGGGGTGAGGGGGTGAGGGGTGCGGGGCGAGGCGCGAGGGGCGAGGGGCGAGGCGCGAGGGGTGAGGGGTGAGGGGTGCGGGGCGAGGCGCGAGGGGCGAGGGGCGAGGGGCGAGGGGTGAGGGGTGCGTGGGCGAGGGCGAGGCGTGCGAGGGGCCAGGGG TR:VR 36:9 15:0 chr7 863356 r_302_0 G [chr7:100352232[G . PASS SVTYPE=BND;MATEID=r_302_1 TR:VR 62:18 39:0 chr7 100352232 r_302_1 G [chr7:863356[G . PASS SVTYPE=BND;MATEID=r_302_0 TR:VR 62:18 39:0 chr9 87013858 r_348 G . Too_low_VAF END=87179756;SVTYPE=DUP;SVLEN=165898 TR:VR 99:3 33:0 chr10 92375146 r_54_0 G [chr8:52948907[T . PASS SVTYPE=BND;MATEID=r_54_1 TR:VR 52:3 35:1 chr8 52948907 r_54_1 T [chr10:92375146[T . PASS SVTYPE=BND;MATEID=r_54_0 TR:VR 52:3 35:1 chr11 5228408 d_273 T . PASS END=5228502;SVTYPE=DEL;SVLEN=-94 TR:VR 33:10 22:0 chr5 32859125 d_1132 C . PASS END=32859398;SVTYPE=DEL;SVLEN=-273 TR:VR 33:11 20:0 chr7 158395413 d_1285 G . PASS END=158395437;SVTYPE=INS;SVINSLEN=30;SVINSSEQ=GGTGAGGGGTGAGGGGTGAGGGCGAGGGGT TR:VR 36:3 15:0 chr7 89216781 d_1241 C . PASS END=89216941;SVTYPE=DEL;SVLEN=-160 TR:VR 34:10 11:0 chr9 88028279 d_1345 C . PASS END=88028446;SVTYPE=DEL;SVLEN=-167 TR:VR 43:17 10:0 chrX 14681887 d_1494 A . PASS END=14681936;SVTYPE=DEL;SVLEN=-49;SVINSLEN=1;SVINSSEQ=C TR:VR 39:3 23:0 chr1 69589015 d_29 A . PASS END=69589160;SVTYPE=DEL;SVLEN=-145 TR:VR 19:6 18:0 chr16 57232169 r_145 T . PASS END=57467339;SVTYPE=DUP;SVLEN=235170 TR:VR 72:10 32:0 chr21 7946163 d_924 T . Too_low_VAF;Too_small_size END=7946172;SVTYPE=DEL;SVLEN=-9 TR:VR 424:3 250:1 chr4_GL000008v2_random 145064 r_258_0 A A]chr4_GL000008v2_random:145121] . PASS SVTYPE=BND;MATEID=r_258_1 TR:VR 75:16 49:0 chr4_GL000008v2_random 145121 r_258_1 A A]chr4_GL000008v2_random:145064] . PASS SVTYPE=BND;MATEID=r_258_0 TR:VR 75:16 49:0 chr5 82595685 d_1159 G . Too_small_size END=82595720;SVTYPE=DEL;SVLEN=-35 TR:VR 26:21 14:0 chr6 35521524 r_287 C . PASS END=35657429;SVTYPE=DUP;SVLEN=135905 TR:VR 75:12 42:0 chr9 89448315 r_349 C . PASS END=89470313;SVTYPE=DEL;SVLEN=-21998 TR:VR 65:14 29:0 chrX 149021724 r_374 T . PASS END=149022554;SVTYPE=DEL;SVLEN=-830 TR:VR 34:3 23:0 chrX 83426564 d_1507 T . Too_small_size END=83426604;SVTYPE=DEL;SVLEN=-40 TR:VR 24:8 14:0 chr13 98165704 d_333 G . PASS END=98168201;SVTYPE=DEL;SVLEN=-2497 TR:VR 38:5 13:0 chr2 168108656 r_197 C . PASS END=168116137;SVTYPE=DUP;SVLEN=7481 TR:VR 53:5 21:0 chr5 34132466 d_1134 T . PASS END=34135642;SVTYPE=DEL;SVLEN=-3176;SVINSLEN=17;SVINSSEQ=GTAATTATATACAGATG TR:VR 27:4 19:0 chr6 35925298 r_288_0 A [chr6:35930680[T . PASS SVTYPE=BND;MATEID=r_288_1 TR:VR 38:5 27:0 chr6 35930680 r_288_1 T [chr6:35925298[T . PASS SVTYPE=BND;MATEID=r_288_0 TR:VR 38:5 27:0 chr7 129849901 d_1258 C . PASS END=129849987;SVTYPE=DEL;SVLEN=-86 TR:VR 55:15 13:0 chr8 30806242 r_322 G . PASS END=30813879;SVTYPE=DUP;SVLEN=7637 TR:VR 25:7 19:0 chr9 91696271 d_1346 T . PASS END=91699512;SVTYPE=DEL;SVLEN=-3241;SVINSLEN=1;SVINSSEQ=G TR:VR 59:12 21:0 chr1 70794926 r_19_0 C C]chr1:74279084] . PASS SVTYPE=BND;MATEID=r_19_1 TR:VR 76:9 34:0 chr1 74279084 r_19_1 A A]chr1:70794926] . PASS SVTYPE=BND;MATEID=r_19_0 TR:VR 76:9 34:0 chr2 169695525 d_827 T . PASS END=169695648;SVTYPE=DEL;SVLEN=-123 TR:VR 28:12 17:0 chr2 85545624 r_186 C . PASS END=85550956;SVTYPE=DUP;SVLEN=5332 TR:VR 56:11 20:0 chr21 30263203 d_942 A . Too_small_size END=30263248;SVTYPE=DEL;SVLEN=-45 TR:VR 35:11 21:0 chr4 29178044 r_248 T . PASS END=29201409;SVTYPE=DEL;SVLEN=-23365 TR:VR 31:18 28:0 chr5 36986217 r_265_0 G [chr5:36990990[T . PASS SVTYPE=BND;MATEID=r_265_1 TR:VR 44:10 12:0 chr5 36990990 r_265_1 T [chr5:36986217[T . PASS SVTYPE=BND;MATEID=r_265_0 TR:VR 44:10 12:0 chr8 33790975 r_323_0 A [chr8:96921393[A . PASS SVTYPE=BND;MATEID=r_323_1 TR:VR 80:17 31:0 chr8 96921393 r_323_1 A [chr8:33790975[A . PASS SVTYPE=BND;MATEID=r_323_0 TR:VR 80:17 31:0 chr9 94398134 r_350 A . PASS END=94421594;SVTYPE=DEL;SVLEN=-23460 TR:VR 87:12 33:0 chrUn_KI270519v1 94675 d_1451 G . PASS END=95124;SVTYPE=DEL;SVLEN=-449;SVINSLEN=110;SVINSSEQ=GAGAGCTTTTAGGCCTATGGTGGAAAAGGAAATATCTTCACATAAAAACTAGACAGAAGCATTCTGAGAAACTTCTTTGTGATGTGTGCATTCAACTCACAGAGTTGAAC TR:VR 77:4 38:1 chr1 70794923 r_20_0 A [chr1:74279088[C . PASS SVTYPE=BND;MATEID=r_20_1 TR:VR 76:20 34:0 chr1 74279088 r_20_1 C [chr1:70794923[C . PASS SVTYPE=BND;MATEID=r_20_0 TR:VR 76:20 34:0 chr10 97645497 r_56_0 A A]chr16:75352447] . PASS SVTYPE=BND;MATEID=r_56_1 TR:VR 87:7 34:0 chr16 75352447 r_56_1 G G]chr10:97645497] . PASS SVTYPE=BND;MATEID=r_56_0 TR:VR 87:7 34:0 chr17_KI270729v1_random 62317 d_640 T . PASS END=62319;SVTYPE=INS;SVINSLEN=220;SVINSSEQ=TGATTATGATTCTACTAGAGTCCATTCAATGACTCCATTCGAGTCCATTCAAATGAATTCCATTCGATTCCATTCGATGATTCCATTCGATTCCATTTGATGATTCCATTCGAGTCCATTTAATCATTACAGTCGAGTCCATTTGGTGATTCCACTGGATTTCTTTTGATAATGATACCATTCCATTACATTTGATGATGATCCCATTCAATTTCATTTG TR:VR 40:9 19:0 chr2 170649080 i_570 T . PASS END=170649080;SVTYPE=INS;SVINSLEN=62;SVINSSEQ=AAAATAATATATAATGTATATTATATATAAAATAATATATAATGTAATATATTATATAATAA TR:VR 38:3 17:0 chr2 85816316 r_187 C . PASS END=85818665;SVTYPE=DUP;SVLEN=2349 TR:VR 48:7 22:0 chr21 32518153 r_219 G . PASS END=34841391;SVTYPE=DEL;SVLEN=-2323238 TR:VR 73:21 17:0 chr3 184598127 r_245 T . PASS END=184609129;SVTYPE=DUP;SVLEN=11002 TR:VR 52:22 21:0 chr4 29615303 d_1052 A . Too_small_size END=29615343;SVTYPE=DEL;SVLEN=-40 TR:VR 23:11 18:0 chr5 36990744 r_266_0 A AGACAGTTTTGTAGCACAACTACAGGCTTAGCTCCTTTATTT]chr5:37327864] . PASS SVTYPE=BND;MATEID=r_266_1;SVINSLEN=41;SVINSSEQ=GACAGTTTTGTAGCACAACTACAGGCTTAGCTCCTTTATTT TR:VR 77:10 31:0 chr5 37327864 r_266_1 T TAAATAAAGGAGCTAAGCCTGTAGTTGTGCTACAAAACTGTC]chr5:36990744] . PASS SVTYPE=BND;MATEID=r_266_0;SVINSLEN=41;SVINSSEQ=AAATAAAGGAGCTAAGCCTGTAGTTGTGCTACAAAACTGTC TR:VR 77:10 31:0 chr9 94561164 r_351 T . Too_low_VAF END=94562570;SVTYPE=DUP;SVLEN=1406;SVINSLEN=1;SVINSSEQ=G TR:VR 64:3 23:0 chr1 160668275 r_29_0 C [chr1:160688698[AGAAAT . PASS SVTYPE=BND;MATEID=r_29_1;SVINSLEN=5;SVINSSEQ=AGAAA TR:VR 98:13 35:0 chr1 160688698 r_29_1 T [chr1:160668275[TTTCTT . PASS SVTYPE=BND;MATEID=r_29_0;SVINSLEN=5;SVINSSEQ=TTTCT TR:VR 98:13 35:0 chr12 437925 d_297 A . PASS END=438018;SVTYPE=DEL;SVLEN=-93 TR:VR 23:3 14:0 chr14 101816755 d_365 A . PASS END=101818127;SVTYPE=DEL;SVLEN=-1372 TR:VR 21:12 23:0 chr14_GL000225v1_random 111579 d_449 G . Too_low_VAF END=111652;SVTYPE=DEL;SVLEN=-73;SVINSLEN=6;SVINSSEQ=TCCCAT TR:VR 271:3 190:1 chr2 86830540 d_703 C . PASS END=86830589;SVTYPE=DEL;SVLEN=-49 TR:VR 48:12 23:0 chr5 37312243 r_267 A . PASS END=37317982;SVTYPE=DUP;SVLEN=5739 TR:VR 66:4 18:0 chr6 40733238 r_290 G . PASS END=41248484;SVTYPE=DUP;SVLEN=515246 TR:VR 79:11 39:0 chr7 9777677 d_1224 T . PASS END=9777725;SVTYPE=DEL;SVLEN=-48 TR:VR 34:16 19:0 chr9 94561355 d_1347 T . Too_low_VAF;Too_small_size END=94561395;SVTYPE=DEL;SVLEN=-40 TR:VR 61:3 22:0 chr1 160751241 r_30_0 G G]chr1:160845656] . PASS SVTYPE=BND;MATEID=r_30_1 TR:VR 113:11 33:0 chr1 160845656 r_30_1 G G]chr1:160751241] . PASS SVTYPE=BND;MATEID=r_30_0 TR:VR 113:11 33:0 chr11 108944137 d_289 T . PASS END=108944185;SVTYPE=DEL;SVLEN=-48 TR:VR 35:25 14:0 chr12 45975769 r_102_0 A ]chr19:19064739]G . PASS SVTYPE=BND;MATEID=r_102_1 TR:VR 74:7 36:0 chr19 19064739 r_102_1 G G[chr12:45975769[ . PASS SVTYPE=BND;MATEID=r_102_0 TR:VR 74:7 36:0 chr2 179257854 r_198_0 A [chr5:168685916[C . PASS SVTYPE=BND;MATEID=r_198_1 TR:VR 76:18 32:0 chr5 168685916 r_198_1 C [chr2:179257854[C . PASS SVTYPE=BND;MATEID=r_198_0 TR:VR 76:18 32:0 chr3 185494963 d_1035 A . PASS END=185495041;SVTYPE=DEL;SVLEN=-78;SVINSLEN=1;SVINSSEQ=A TR:VR 34:22 19:0 chr4 31815181 i_797 T . PASS END=31815181;SVTYPE=INS;SVINSLEN=406;SVINSSEQ=AAAATATATCTTATATACAATAAAACATGATATATGTTATATACAAAATATATAATATATTATATCTATTATATAATATATAATATATATATTGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAACTAGCCGGGCGTAGTGGTGGGCGCCTGTAGTCCCAGCTACTTAGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAATGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCAACAGAGGGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAATATATAT TR:VR 63:8 37:0 chr5 37378571 d_1135 T . PASS END=37378813;SVTYPE=DEL;SVLEN=-242;SVINSLEN=126;SVINSSEQ=GCACTCCAGCCTGGGCGACAGAGGCTCCGTCTCAAAACAAAAACAAAAACAAAAAAAAAAACAAACCAAAACAAAAAACCAAAAATTAGCCGGCACCTGTAATCCCAGCTACTCCGGAGGCTGAGG TR:VR 37:9 20:0 chr6 40848667 r_291 T . PASS END=40858620;SVTYPE=DEL;SVLEN=-9953 TR:VR 56:16 24:0 chr7 136308778 d_1262 G . PASS END=136309274;SVTYPE=DEL;SVLEN=-496 TR:VR 55:11 17:0 chr7 98890248 d_1243 A . PASS END=98890298;SVTYPE=DEL;SVLEN=-50 TR:VR 25:10 14:0 chrX 86278797 r_368_0 A A]chrX:86295958] . Too_low_VAF SVTYPE=BND;MATEID=r_368_1 TR:VR 64:3 23:0 chrX 86295958 r_368_1 T T]chrX:86278797] . Too_low_VAF SVTYPE=BND;MATEID=r_368_0 TR:VR 64:3 23:0 chr11 62824830 r_78_0 T ]chr2:138108530]T . PASS SVTYPE=BND;MATEID=r_78_1 TR:VR 54:8 24:0 chr2 138108530 r_78_1 T T[chr11:62824830[ . PASS SVTYPE=BND;MATEID=r_78_0 TR:VR 54:8 24:0 chr12 45975997 r_103_0 C C[chr19:19061058[ . PASS SVTYPE=BND;MATEID=r_103_1 TR:VR 72:7 35:0 chr19 19061058 r_103_1 G ]chr12:45975997]G . PASS SVTYPE=BND;MATEID=r_103_0 TR:VR 72:7 35:0 chr19 4450824 r_169 T . PASS END=4463802;SVTYPE=DUP;SVLEN=12978 TR:VR 31:7 9:0 chr2 181342293 r_199 G . PASS END=181867716;SVTYPE=DUP;SVLEN=525423 TR:VR 83:15 35:0 chr21 40202376 d_943 A . Too_small_size END=40202411;SVTYPE=DEL;SVLEN=-35 TR:VR 42:15 23:0 chr3 1925969 r_225 A . PASS END=37254048;SVTYPE=DUP;SVLEN=35328079 TR:VR 59:6 36:0 chr8 41068423 r_324_0 A [chr9:123083909[G . PASS SVTYPE=BND;MATEID=r_324_1 TR:VR 130:9 50:0 chr9 123083909 r_324_1 G [chr8:41068423[G . PASS SVTYPE=BND;MATEID=r_324_0 TR:VR 130:9 50:0 chr9 96095300 r_352 A . PASS END=121461422;SVTYPE=DUP;SVLEN=25366122;SVINSLEN=1;SVINSSEQ=T TR:VR 121:15 36:0 chrX 156030057 i_1247 T . Too_low_VAF END=156030057;SVTYPE=INS;SVINSLEN=281;SVINSSEQ=GACAGTTGAGGTTGGGGTTGAGGCCAACAGGGGTTGGGGAACAGGGTTAGGCCGTTAGGAGTTAGGTCAGTTGGGGTCAATAGGTCATCAGGTCAGGGTCCAGGGTCAGGGTCGAGGTTGCCAGGTCAGGGGTTGAGGTTGAGGTTGAGGTTGAGGTTGAGGAGTTGGGGGTTAGGGTTGTGGGTTAGGGTTAGGGAACAGGTTTAGGGTTGGGGTTGAGGTTAAGGGTTAGGGTTAGGGTTGAGGTAGGAGTTGGAGGGTTAGGGTTAGGGTTAGGGCCA TR:VR 234:5 179:0 chrX 86278812 r_369_0 G [chrX:86295968[T . PASS SVTYPE=BND;MATEID=r_369_1 TR:VR 64:4 23:0 chrX 86295968 r_369_1 T [chrX:86278812[T . PASS SVTYPE=BND;MATEID=r_369_0 TR:VR 64:4 23:0 chr11 62824991 r_79_0 A AGCAG[chr2:137231805[ . PASS SVTYPE=BND;MATEID=r_79_1;SVINSLEN=4;SVINSSEQ=GCAG TR:VR 58:8 39:0 chr2 137231805 r_79_1 T ]chr11:62824991]CTGCT . PASS SVTYPE=BND;MATEID=r_79_0;SVINSLEN=4;SVINSSEQ=CTGC TR:VR 58:8 39:0 chr12 45991723 r_104 A . PASS END=46001292;SVTYPE=DUP;SVLEN=9569 TR:VR 56:3 22:0 chr2 96544736 r_189 A . PASS END=96552575;SVTYPE=DUP;SVLEN=7839 TR:VR 55:9 23:0 chr3 100033074 r_235 A . PASS END=100039995;SVTYPE=DEL;SVLEN=-6921;SVINSLEN=4;SVINSSEQ=AAAG TR:VR 49:22 21:0 chr5 44160539 d_1136 T . PASS END=44160717;SVTYPE=DEL;SVLEN=-178 TR:VR 33:12 15:0 chr6 41276147 d_1185 G . PASS END=41278005;SVTYPE=DEL;SVLEN=-1858 TR:VR 45:13 26:0 chr8 41068597 r_325_0 T T]chr9:123784024] . PASS SVTYPE=BND;MATEID=r_325_1 TR:VR 122:9 37:0 chr9 123784024 r_325_1 G G]chr8:41068597] . PASS SVTYPE=BND;MATEID=r_325_0 TR:VR 122:9 37:0 chr9 96372355 r_353 C . PASS END=120716955;SVTYPE=DEL;SVLEN=-24344600 TR:VR 111:38 33:0 chr1 167629923 r_31 T . PASS END=167647544;SVTYPE=DUP;SVLEN=17621;SVINSLEN=1;SVINSSEQ=G TR:VR 100:17 18:0 chr1 85198615 i_33 T . PASS END=85198615;SVTYPE=INS;SVINSLEN=81;SVINSSEQ=GCAAAAATCAAATTCATTCTTAAAGGAACTATATTTATTACTTTAAAAATCCTTGAATGTTTACTACTGAGGGCATTAAAG TR:VR 26:8 19:0 chr12 47109796 r_105 G . PASS END=66173086;SVTYPE=DEL;SVLEN=-19063290 TR:VR 60:15 46:0 chr15 20636724 r_130_0 C [chr9:94152487[T . PASS SVTYPE=BND;MATEID=r_130_1 TR:VR 74:4 37:0 chr9 94152487 r_130_1 T [chr15:20636724[T . PASS SVTYPE=BND;MATEID=r_130_0 TR:VR 74:4 37:0 chr16 72139109 r_148 C . PASS END=72255942;SVTYPE=DUP;SVLEN=116833 TR:VR 77:13 38:0 chr2 18753561 r_176 A . PASS END=18760581;SVTYPE=DUP;SVLEN=7020;SVINSLEN=2;SVINSSEQ=TG TR:VR 32:7 19:0 chr2 97088162 r_190 T . Too_low_VAF END=97930686;SVTYPE=DUP;SVLEN=842524 TR:VR 68:3 31:0 chr6 45355001 d_1186 G . PASS END=45355057;SVTYPE=DEL;SVLEN=-56 TR:VR 42:7 19:0 chr7 140197681 d_1264 C . PASS END=140199162;SVTYPE=DEL;SVLEN=-1481 TR:VR 35:11 18:0 chr1 89655256 d_30 T . PASS END=89655382;SVTYPE=DEL;SVLEN=-126 TR:VR 34:8 15:0 chr11 11247230 r_69_0 C C[chr15:85896283[ . Too_low_VAF SVTYPE=BND;MATEID=r_69_1 TR:VR 66:3 52:1 chr15 85896283 r_69_1 T ]chr11:11247230]T . Too_low_VAF SVTYPE=BND;MATEID=r_69_0 TR:VR 66:3 52:1 chr16 73919649 d_588 T . Too_small_size END=73919686;SVTYPE=DEL;SVLEN=-37 TR:VR 33:3 23:0 chr2 190919777 r_200 A . PASS END=190927445;SVTYPE=DUP;SVLEN=7668 TR:VR 53:5 18:0 chr20 10017631 d_846 T . PASS END=10017736;SVTYPE=DEL;SVLEN=-105 TR:VR 39:15 11:0 chr21 41962019 r_220 G . PASS END=42080523;SVTYPE=DUP;SVLEN=118504 TR:VR 77:11 37:0 chr3 100054239 r_236 C . PASS END=100113901;SVTYPE=DEL;SVLEN=-59662 TR:VR 59:13 28:0 chr6 4774486 d_1177 T . PASS END=4774677;SVTYPE=DEL;SVLEN=-191 TR:VR 38:10 18:0 chr11 113376496 r_86 A . PASS END=113379591;SVTYPE=DUP;SVLEN=3095 TR:VR 37:8 12:0 chr12 53141978 r_106_0 G [chr2:115525615[GG . PASS SVTYPE=BND;MATEID=r_106_1;SVINSLEN=1;SVINSSEQ=G TR:VR 60:5 28:0 chr2 115525615 r_106_1 G [chr12:53141978[CG . PASS SVTYPE=BND;MATEID=r_106_0;SVINSLEN=1;SVINSSEQ=C TR:VR 60:5 28:0 chr16 74666842 r_149 C . PASS END=75434823;SVTYPE=DUP;SVLEN=767981 TR:VR 99:9 30:0 chr19 51622072 i_426 A . PASS END=51622072;SVTYPE=INS;SVINSLEN=299;SVINSSEQ=TTTTTTGGAATTTAACCCTCTTATATTTTTTAAATACTTTCATTCTGCATTCTGATAAGGAATCAGAAAATGCACTTTTAAAAAGATAGCATTTACAATAGCAACAAAAACTGGTATTTAGGAAGAAAAATAACAAAAGATGTGTAAGACCTGTGTGAAGAAACTCTACATTATCTCTTTAAAACACTTAAAAATATTTAAAGGAATAGAGAGAGAAAGACCTACTGTCATGGATAAGAAGGCATGAATTTCTAAACAAGTAAATTTTTTCCACATTGAGCTATAGATTCAATGTATTT TR:VR 40:3 12:0 chr20 10500914 d_847 G . PASS END=10501026;SVTYPE=DEL;SVLEN=-112 TR:VR 44:14 18:0 chrX 89978471 d_1508 G . PASS END=89980026;SVTYPE=DEL;SVLEN=-1555 TR:VR 33:10 19:0 chr1 92012782 d_31 C . PASS END=92013295;SVTYPE=DEL;SVLEN=-513;SVINSLEN=6;SVINSSEQ=CAACCA TR:VR 44:11 17:0 chr12 53551067 d_304 A . PASS END=53551131;SVTYPE=DEL;SVLEN=-64 TR:VR 19:9 15:0 chr16 75118932 r_150 T . Too_low_VAF END=75402011;SVTYPE=DUP;SVLEN=283079 TR:VR 87:3 25:0 chr20 11397604 r_207 A . PASS END=11424453;SVTYPE=DEL;SVLEN=-26849;SVINSLEN=3;SVINSSEQ=TAT TR:VR 66:5 38:0 chr6 51549708 d_1187 G . PASS END=51553421;SVTYPE=DEL;SVLEN=-3713;SVINSLEN=2;SVINSSEQ=CC TR:VR 42:18 26:0 chr1 179123907 i_63 A . Too_small_size END=179123910;SVTYPE=INS;SVINSLEN=43;SVINSSEQ=AACGTGAGCCACCACACCCAGCCAGGCCAACTTATTTTTAATA TR:VR 52:8 23:0 chr1 94114733 d_32 T . PASS END=94114796;SVTYPE=DEL;SVLEN=-63 TR:VR 34:12 22:0 chr11 115733360 d_290 A . PASS END=115733419;SVTYPE=DEL;SVLEN=-59 TR:VR 26:6 21:0 chr12 545722 i_181 G . PASS END=545725;SVTYPE=INS;SVINSLEN=226;SVINSSEQ=ATGATGAGGGAGGAGAGCGAGGGACGGGAAGGAGTGGGGAGGAGGAGTGGGGGAGGTAAGAGGAATGGGGAGGGGAGCGAGGGAGTGGGGAGGAGAGAGAGGGTGGGGAGGTGAGGGAGTGGGGAGGAGCGAGGAGTGGGGAGAGGTGAGAGGAGTGGGGAGGTGCGAGGAGTGGGGAGGTGAGAGGGGAGTGGGGAGGTGAGAGGGTGGGGAGGTAAGAGGGAAT TR:VR 31:5 15:0 chr18 13334420 r_165_0 G G[chr8:19542755[ . PASS SVTYPE=BND;MATEID=r_165_1 TR:VR 63:20 40:0 chr8 19542755 r_165_1 T ]chr18:13334420]T . PASS SVTYPE=BND;MATEID=r_165_0 TR:VR 63:20 40:0 chr20 18131344 r_208_0 C [chr7:115568143[G . Too_low_VAF SVTYPE=BND;MATEID=r_208_1 TR:VR 98:4 32:0 chr7 115568143 r_208_1 G [chr20:18131344[G . Too_low_VAF SVTYPE=BND;MATEID=r_208_0 TR:VR 98:4 32:0 chr21 43696836 r_221_0 A ]chr8:42421854]C . PASS SVTYPE=BND;MATEID=r_221_1 TR:VR 82:11 23:0 chr8 42421854 r_221_1 C C[chr21:43696836[ . PASS SVTYPE=BND;MATEID=r_221_0 TR:VR 82:11 23:0 chr6 51583117 r_292 G . PASS END=51590058;SVTYPE=DUP;SVLEN=6941 TR:VR 61:8 21:0 chr7 142450120 r_315 G . Too_low_VAF END=142526501;SVTYPE=DUP;SVLEN=76381 TR:VR 116:3 40:0 chr10 101610647 r_57 G . PASS END=102182486;SVTYPE=DUP;SVLEN=571839;SVINSLEN=2;SVINSSEQ=TT TR:VR 55:16 31:0 chr11 82355191 r_81 T . PASS END=82358957;SVTYPE=DUP;SVLEN=3766 TR:VR 31:6 19:0 chr16 77450053 r_151_0 T [chr16:77842570[A . PASS SVTYPE=BND;MATEID=r_151_1 TR:VR 73:5 40:0 chr16 77842570 r_151_1 A [chr16:77450053[A . PASS SVTYPE=BND;MATEID=r_151_0 TR:VR 73:5 40:0 chr17 4051160 r_155 G . PASS END=4054645;SVTYPE=DUP;SVLEN=3485 TR:VR 30:4 17:0 chr18 13722872 d_646 C . Too_small_size END=13722909;SVTYPE=DEL;SVLEN=-37 TR:VR 21:16 17:0 chr20 31448825 d_889 C . PASS END=31448888;SVTYPE=DEL;SVLEN=-63;SVINSLEN=3;SVINSSEQ=TAA TR:VR 31:12 14:0 chr21 43699300 r_222_0 T T]chr21:44266165] . PASS SVTYPE=BND;MATEID=r_222_1 TR:VR 98:12 23:0 chr21 44266165 r_222_1 C C]chr21:43699300] . PASS SVTYPE=BND;MATEID=r_222_0 TR:VR 98:12 23:0 chr7 144488606 i_974 G . PASS END=144488606;SVTYPE=INS;SVINSLEN=285;SVINSSEQ=AGGCACACACACATGGCACCCACATGCACACACACACACGCGTGCACGTGGAGGCACACACACGGGTGCACCCACATGCACACACACACGTGCACGTGGGAGGCACACATGGGTGCACCCACATGCACACACACACGTGCACGTGGAGGCACACACATGGGTGCACCCACATGCACACACACACACGTGCACGGAGGCACACACATGGGTGCACCCACATGCACACACACACGTGCACGTGGAGGCACACACATGGGTGCACCCACATGCACACACGTGCAGGTA TR:VR 44:4 16:0 chr8 1103395 d_1290 G . Too_small_size END=1103339;SVTYPE=INS;SVINSLEN=0;SVINSSEQ= TR:VR 15:7 11:0 chrUn_KI270742v1 7798 d_1457 C . Too_low_VAF END=8486;SVTYPE=DEL;SVLEN=-688 TR:VR 77:3 48:0 chr10 102308936 r_58_0 T [chr10:102850056[TT . PASS SVTYPE=BND;MATEID=r_58_1;SVINSLEN=1;SVINSSEQ=T TR:VR 78:13 32:0 chr10 102850056 r_58_1 T [chr10:102308936[AT . PASS SVTYPE=BND;MATEID=r_58_0;SVINSLEN=1;SVINSSEQ=A TR:VR 78:13 32:0 chr11 118537741 r_87 T . Too_low_VAF END=118637418;SVTYPE=DUP;SVLEN=99677 TR:VR 67:3 21:0 chr11 82991864 d_286 A . PASS END=82992034;SVTYPE=DEL;SVLEN=-170 TR:VR 23:10 16:0 chr12 59621189 r_107 T . PASS END=75832335;SVTYPE=DUP;SVLEN=16211146 TR:VR 68:16 36:0 chr16 77450550 r_152_0 C C]chr16:77845934] . PASS SVTYPE=BND;MATEID=r_152_1 TR:VR 79:13 40:0 chr16 77845934 r_152_1 T T]chr16:77450550] . PASS SVTYPE=BND;MATEID=r_152_0 TR:VR 79:13 40:0 chr19 54596580 d_677 G . PASS END=54596891;SVTYPE=DEL;SVLEN=-311 TR:VR 33:5 15:0 chr20 19545344 r_209 G . PASS END=19548781;SVTYPE=DUP;SVLEN=3437 TR:VR 42:3 24:0 chr3 102999688 d_1014 A . PASS END=102999757;SVTYPE=DEL;SVLEN=-69;SVINSLEN=1;SVINSSEQ=T TR:VR 36:15 21:0 chr5 95175301 r_273 A . PASS END=95185978;SVTYPE=DUP;SVLEN=10677 TR:VR 32:13 27:0 chr1 186114165 d_180 A . PASS END=186115249;SVTYPE=DEL;SVLEN=-1084 TR:VR 47:23 17:0 chr10 102852344 i_132 T . PASS END=102852408;SVTYPE=INS;SVINSLEN=342;SVINSSEQ=CATGCACATAAACTCAATAAAGTTTATTAAGGACAAAAAGTAAACAGTAAATGAGATTCAACGGAGACATATGAATCCAGAGAAGGGCTAAACTTTAGAAAGAAAAAAGGAAAACATCTTTCCTATCCAAGGAAAACCTATAAACAGATGGAGAAGTCCACAGTTGCATCATCTGGGTAAAACAGAGAAGACAGAGCTGGAAACCGCGGGCAGCTTGTGCCAACACGCTCGGGGAAGGCAAATGGAAGAAGACGCCCGTGCTCAAATGGTGACCATTACCAGGGCCAGACCTATTCATGCCAGCAGCATGATCCTAGTTTCTAGATGCCGGAACAAAAGCAT TR:VR 49:9 11:0 chr11 120084330 d_291 C . PASS END=120084747;SVTYPE=DEL;SVLEN=-417;SVINSLEN=84;SVINSSEQ=TTCACCTCGGCATTTCCCACAACAGTGCTCCACCTGCCTCACCTCGGCATTTCCCACAACAGTGGTCCACCTGCCTCACCTCGG TR:VR 30:3 15:0 chr11 85462185 r_82 A . PASS END=85512509;SVTYPE=DEL;SVLEN=-50324 TR:VR 33:13 42:0 chr12 59621344 r_108 A . PASS END=75830136;SVTYPE=DEL;SVLEN=-16208792;SVINSLEN=1;SVINSSEQ=A TR:VR 65:16 33:0 chr16 79143222 r_153 C . Too_low_VAF END=79578726;SVTYPE=DUP;SVLEN=435504 TR:VR 71:3 31:0 chr2 198162280 r_201 A . PASS END=198190134;SVTYPE=DEL;SVLEN=-27854 TR:VR 57:4 37:0 chr20 22943779 d_848 T . PASS END=22943831;SVTYPE=DEL;SVLEN=-52 TR:VR 37:3 15:0 chr6 57960427 r_293 C . PASS END=57987136;SVTYPE=DEL;SVLEN=-26709 TR:VR 53:13 39:0 chrUn_KI270745v1 11695 d_1458 C . Too_small_size END=11738;SVTYPE=DEL;SVLEN=-43 TR:VR 8:8 4:0 chr10 104312691 r_59_0 C ]chr14:42810388]AAT . PASS SVTYPE=BND;MATEID=r_59_1;SVINSLEN=2;SVINSSEQ=AA TR:VR 96:15 34:0 chr14 42810388 r_59_1 T TTT[chr10:104312691[ . PASS SVTYPE=BND;MATEID=r_59_0;SVINSLEN=2;SVINSSEQ=TT TR:VR 96:15 34:0 chr11 86705335 d_287 G . PASS END=86705664;SVTYPE=DEL;SVLEN=-329 TR:VR 20:8 13:0 chr18 23358890 r_166 T . PASS END=23362490;SVTYPE=DUP;SVLEN=3600 TR:VR 34:10 21:0 chr19 55448943 d_679 A . PASS END=55448992;SVTYPE=INS;SVINSLEN=96;SVINSSEQ=CCCACCCAGACACCACACACACTGTACACACACCACACACACCCCACACACCACACACACAGTGCACAAACCACACACCACACACACACCACACCA TR:VR 38:3 24:0 chr20 24432970 r_210_0 A ]chr4:161894951]T . PASS SVTYPE=BND;MATEID=r_210_1 TR:VR 58:4 46:0 chr4 161894951 r_210_1 T T[chr20:24432970[ . PASS SVTYPE=BND;MATEID=r_210_0 TR:VR 58:4 46:0 chr20 36609218 i_614 C . PASS END=36609219;SVTYPE=INS;SVINSLEN=111;SVINSSEQ=ACACACACACACACACACACACACACACACACACACTATATATAGAGTTTCGCTGTTGCCCAGGCACACACACACACACACACACACACACACACACACACACACACACAC TR:VR 29:14 18:0 chr8 121546178 d_1314 A . PASS END=121546719;SVTYPE=DEL;SVLEN=-541 TR:VR 59:12 20:0 chrX 1681746 i_1213 T . PASS END=1681746;SVTYPE=INS;SVINSLEN=281;SVINSSEQ=CCCTCTCTTTCTCTCTCTCTTTCTCTCTTTCTCTCTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCTCTCTTTCTCTCTCTTTCTCTTTCTCTCTCTCTCTCTCTCTCTTTCTCTCTCTCTTTCTCTCTCTCTTTCTCTCTCTCTTTCTCTTCTCTCTTTCTCTCTCTCTCTCTTTCTCTCTTTCTCTCTCTTTCTCTCTTTCTCTCTCTTTCTCTCTCTCTCTCTTTCTCTCTTTCTCTCTTTCCCTCTCTTTCTCTCTCTCTCTCTCTCTCT TR:VR 30:3 16:0 chr1 187518146 d_182 C . Too_small_size END=187518183;SVTYPE=DEL;SVLEN=-37 TR:VR 37:8 17:0 chr10 104316118 r_60_0 C C[chr14:42335921[ . PASS SVTYPE=BND;MATEID=r_60_1 TR:VR 84:12 28:0 chr14 42335921 r_60_1 C ]chr10:104316118]C . PASS SVTYPE=BND;MATEID=r_60_0 TR:VR 84:12 28:0 chr11 8702005 r_68 T . PASS END=9804040;SVTYPE=DUP;SVLEN=1102035 TR:VR 79:18 37:0 chr12 6894145 d_300 A . Too_small_size END=6894186;SVTYPE=DEL;SVLEN=-41 TR:VR 36:19 10:0 chr15 35531347 r_131 A . PASS END=35539112;SVTYPE=DUP;SVLEN=7765;SVINSLEN=1;SVINSSEQ=C TR:VR 34:8 24:0 chr18 24234631 d_649 C . PASS END=24234855;SVTYPE=DEL;SVLEN=-224 TR:VR 20:15 22:0 chr2 202808851 r_203 A . PASS END=202816925;SVTYPE=DUP;SVLEN=8074 TR:VR 45:9 19:0 chr2 90395159 d_781 T . Too_low_VAF END=90395328;SVTYPE=DEL;SVLEN=-169;SVINSLEN=1;SVINSSEQ=G TR:VR 629:3 319:1 chr7 150351244 r_316 G . PASS END=150360015;SVTYPE=DUP;SVLEN=8771;SVINSLEN=41;SVINSSEQ=ATCCACCACACACAACCCATCACACACACAACCCACCACAC TR:VR 76:7 17:0 chr8 125434238 r_333 G . PASS END=125712488;SVTYPE=DUP;SVLEN=278250;SVINSLEN=1;SVINSSEQ=C TR:VR 123:23 41:0 chr11 89721170 r_83_0 A ]chr14:55771038]T . PASS SVTYPE=BND;MATEID=r_83_1 TR:VR 49:12 36:0 chr14 55771038 r_83_1 T T[chr11:89721170[ . PASS SVTYPE=BND;MATEID=r_83_0 TR:VR 49:12 36:0 chr15 45956169 d_488 G . PASS END=45957745;SVTYPE=DEL;SVLEN=-1576 TR:VR 20:15 23:0 chr18 24238804 r_167_0 A A[chr4_GL000008v2_random:137872[ . PASS SVTYPE=BND;MATEID=r_167_1 TR:VR 90:7 52:0 chr4_GL000008v2_random 137872 r_167_1 T ]chr18:24238804]T . PASS SVTYPE=BND;MATEID=r_167_0 TR:VR 90:7 52:0 chr20 2648909 d_843 A . PASS END=2648965;SVTYPE=DEL;SVLEN=-56 TR:VR 27:11 18:0 chr3 105929180 d_1015 T . PASS END=105929230;SVTYPE=DEL;SVLEN=-50 TR:VR 25:14 15:0 chr7 150970853 r_317 G . Too_low_VAF END=151487885;SVTYPE=DUP;SVLEN=517032 TR:VR 98:3 40:0 chr1 197168416 d_184 G . PASS END=197170611;SVTYPE=DEL;SVLEN=-2195 TR:VR 44:3 14:0 chr10 116565752 r_61_0 A A[chr3:159763626[ . PASS SVTYPE=BND;MATEID=r_61_1 TR:VR 81:11 32:0 chr3 159763626 r_61_1 G ]chr10:116565752]G . PASS SVTYPE=BND;MATEID=r_61_0 TR:VR 81:11 32:0 chr11 124533124 r_88 A . PASS END=124542465;SVTYPE=DUP;SVLEN=9341 TR:VR 61:7 16:0 chr2 203925183 d_833 T . PASS END=203925976;SVTYPE=DEL;SVLEN=-793 TR:VR 46:3 19:0 chr5_GL000208v1_random 86074 i_901 G . PASS END=86074;SVTYPE=INS;SVINSLEN=511;SVINSSEQ=CGGTCCAAATATCCACTTGCGGATCCCACAAACAGAGTGTTTCAAAACTGCTCTAAGGAAAGGTATGTTCAACTCTGTGAGTTTACTGCAAACATCCTAAAGAAGTTTCTGAGAATGCTGCTGTCTGGTTTATTGTGAATATATTTTCTTTTCCGCCATAGCCCTCAAAGAGCTCCAAATATCCACTTTCAGATTCTACAGAGTGTTTCAAAACTGCTCTATCCAAAAAAAAGTTTCAACTCGGTGAGTCGAATGCACATATCACAAAGCAGTTTCTGAGAATGCTTTCGTCTATTTTTCCCAGGAAGATATTTCCTTTTGGACCGTAGGCCTCAAATCGCTCCAGATATCCACATGCAGATTCTACAAAAAGAGTGTTTCCAAACTGCCCTATCAAAAGGAAGGTTCAACTCTGGTAGTTGAATGCAAACATCACAAAGAAGTTTCTCAGAATGCTTCTGTCTAGTTGTCATGGAGGCAGATATTTCTTTTTCTACCATAGGTCTCAAAG TR:VR 40:4 14:0 chr8 125858607 d_1316 C . Too_small_size END=125858643;SVTYPE=DEL;SVLEN=-36 TR:VR 57:13 15:0 chr9 13539941 r_341 T . PASS END=13584540;SVTYPE=DUP;SVLEN=44599 TR:VR 104:15 32:0 chrX 1819080 d_1485 T . PASS END=1819067;SVTYPE=INS;SVINSLEN=111;SVINSSEQ=AATCACAACAGTAATATGATACTACCGCCGCATGAGCAGTAATAACAGTAATATGATACTACCGCCGCATGAGAGCAGTAATAACAACAGTAATATGATACTACCACTACA TR:VR 47:5 14:0 chr11 9008274 d_275 G . Too_small_size END=9008312;SVTYPE=DEL;SVLEN=-38 TR:VR 50:22 18:0 chr2 205275809 r_204 C . PASS END=205495902;SVTYPE=DUP;SVLEN=220093 TR:VR 96:18 44:0 chr22 10721676 d_950 C . PASS END=10721890;SVTYPE=DEL;SVLEN=-214;SVINSLEN=9;SVINSSEQ=CTCTCCATT TR:VR 111:7 65:1 chr7 152724163 r_318 T . PASS END=153152046;SVTYPE=DUP;SVLEN=427883;SVINSLEN=3;SVINSSEQ=ATC TR:VR 100:24 37:0 chrX 19442349 r_364_0 T [chrX:111100430[T . PASS SVTYPE=BND;MATEID=r_364_1 TR:VR 79:16 40:0 chrX 111100430 r_364_1 T [chrX:19442349[T . PASS SVTYPE=BND;MATEID=r_364_0 TR:VR 79:16 40:0 chr1 2673805 d_7 T . Too_low_VAF END=2673872;SVTYPE=INS;SVINSLEN=70;SVINSSEQ=GAGCCTCTGACAGCCTGGAACAGCACTCTGCACCCCCAGGAGAGCATCTGACAGCCTGGAACAGCGCGCA TR:VR 141:6 53:0 chr11 95175087 d_288 G . PASS END=95175595;SVTYPE=DEL;SVLEN=-508;SVINSLEN=5;SVINSSEQ=AATAA TR:VR 43:37 18:0 chr15 60170779 r_132_0 G ]chr5:59915804]A . PASS SVTYPE=BND;MATEID=r_132_1 TR:VR 62:10 40:0 chr5 59915804 r_132_1 A A[chr15:60170779[ . PASS SVTYPE=BND;MATEID=r_132_0 TR:VR 62:10 40:0 chr18 49888521 d_650 G . PASS END=49888568;SVTYPE=DEL;SVLEN=-47 TR:VR 21:13 15:0 chr3 90720961 i_742 G . PASS END=90720961;SVTYPE=INS;SVINSLEN=512;SVINSSEQ=TGTTTCATAACTGGTCTATCAAAAGAAAGGTTAAACTCAGTGAGTTGAACCCACACATCACAAAGTAGTTTCTGAGAATCATTCTGTCTAGTTTTCCTGCGAAGATATTGCCTTTTCTACCATAGGCCTCAAACGCCGCTAAATATCCACCTGGAAATTCTACAAAAACTGAGTTTCAGAAGTGCTCTATTGAAAGGAAGCTTCAACTCTGTGAGTTGAAGGTACACATCACAAAGAAGTTTCTGAGAATTCTTCTGTCTAGTTGTAAATGAAGAAATCACGTTTCACACGAAGGCCACAAAGAGGTCCAAATATCCACTTGCAGATTCTACAAGAAGAGTGTTTCGTAACTGGTCTATCAAAAGAAAGGTTAAACTCAGTGAGTTGAACCCACACATCACAAAGTAGTTTCTGAGAATCATTCTGTCTAGTTTTCCTACGAAGATATTGCCTTTTCTAACATAGGCCTCAAACGGCGCTAAATATCCCCCTGGAAATTCTACAAAAACTGA TR:VR 21:3 3:0 chrX 19448789 r_365_0 C CCATGGTCATGGTGAGCTCTTAAAATTTAAGA]chrX:111100410] . PASS SVTYPE=BND;MATEID=r_365_1;SVINSLEN=31;SVINSSEQ=CATGGTCATGGTGAGCTCTTAAAATTTAAGA TR:VR 84:8 40:0 chrX 111100410 r_365_1 C CTCTTAAATTTTAAGAGCTCACCATGACCATG]chrX:19448789] . PASS SVTYPE=BND;MATEID=r_365_0;SVINSLEN=31;SVINSSEQ=TCTTAAATTTTAAGAGCTCACCATGACCATG TR:VR 84:8 40:0 chr11 128271215 r_89_0 A A[chr15:70729657[ . Too_low_VAF SVTYPE=BND;MATEID=r_89_1 TR:VR 76:3 43:0 chr15 70729657 r_89_1 G ]chr11:128271215]G . Too_low_VAF SVTYPE=BND;MATEID=r_89_0 TR:VR 76:3 43:0 chr11 95354435 r_84 G . PASS END=96014863;SVTYPE=DUP;SVLEN=660428;SVINSLEN=3;SVINSSEQ=TTA TR:VR 132:38 35:0 chr12 76379771 r_109 T . PASS END=76381456;SVTYPE=DUP;SVLEN=1685 TR:VR 30:3 24:0 chr14 16096530 d_346 A . Too_low_VAF END=16096645;SVTYPE=DEL;SVLEN=-115;SVINSLEN=19;SVINSSEQ=TGTACAGTATATAATCTAT TR:VR 654:5 546:1 chr17 4385350 d_607 C . Too_small_size END=4385386;SVTYPE=DEL;SVLEN=-36 TR:VR 20:13 12:0 chrX 20844456 d_1496 A . PASS END=20844518;SVTYPE=DEL;SVLEN=-62 TR:VR 28:11 16:0 chr1 207178418 r_32 C . PASS END=207179234;SVTYPE=DUP;SVLEN=816 TR:VR 50:4 18:0 chr11 95510025 r_85 G . Too_low_VAF END=96121257;SVTYPE=DUP;SVLEN=611232 TR:VR 122:5 47:0 chr15 65447466 d_491 A . PASS END=65447523;SVTYPE=DEL;SVLEN=-57 TR:VR 29:10 21:0 chr18 61582017 d_652 T . PASS END=61582066;SVTYPE=DEL;SVLEN=-49 TR:VR 17:5 19:0 chr6 104452562 r_298_0 G G]chr6:104474616] . PASS SVTYPE=BND;MATEID=r_298_1 TR:VR 72:7 24:0 chr6 104474616 r_298_1 A A]chr6:104452562] . PASS SVTYPE=BND;MATEID=r_298_0 TR:VR 72:7 24:0 chr8 128430588 d_1320 A . PASS END=128430650;SVTYPE=DEL;SVLEN=-62 TR:VR 58:27 19:0 chr14 16096530 d_347 A . Too_low_VAF END=16096645;SVTYPE=DEL;SVLEN=-115;SVINSLEN=19;SVINSSEQ=TGTACAGTATATAATCTAT TR:VR 655:5 548:1 chr15 69832536 i_288 G . PASS END=69832536;SVTYPE=INS;SVINSLEN=66;SVINSSEQ=GAGGGGAGGGGAGGAGAAAGGAGGGGAGGGGAGGGAAAGGGAGGGGAGGGGAGGAGAAGGTGAGAG TR:VR 36:3 16:0 chr17 45334056 r_158 T . PASS END=45344883;SVTYPE=DUP;SVLEN=10827 TR:VR 39:10 22:0 chr18 625307 r_164 A . PASS END=670472;SVTYPE=DEL;SVLEN=-45165 TR:VR 54:11 33:0 chr19 8998949 r_170 T . PASS END=9148819;SVTYPE=DUP;SVLEN=149870 TR:VR 43:6 24:0 chr20 50886520 r_214_0 C C]chr20:50926202] . PASS SVTYPE=BND;MATEID=r_214_1 TR:VR 53:7 29:0 chr20 50926202 r_214_1 A A]chr20:50886520] . PASS SVTYPE=BND;MATEID=r_214_0 TR:VR 53:7 29:0 chr6 104465271 r_299_0 T [chr6:104474626[CGG . PASS SVTYPE=BND;MATEID=r_299_1;SVINSLEN=2;SVINSSEQ=CG TR:VR 63:7 21:0 chr6 104474626 r_299_1 G [chr6:104465271[CGG . PASS SVTYPE=BND;MATEID=r_299_0;SVINSLEN=2;SVINSSEQ=CG TR:VR 63:7 21:0 chr10 124547636 r_63_0 A ]chr9:126698261]CATTCCT . PASS SVTYPE=BND;MATEID=r_63_1;SVINSLEN=6;SVINSSEQ=CATTCC TR:VR 95:34 47:0 chr9 126698261 r_63_1 T TGGAATG[chr10:124547636[ . PASS SVTYPE=BND;MATEID=r_63_0;SVINSLEN=6;SVINSSEQ=GGAATG TR:VR 95:34 47:0 chr12 85291710 d_306 G . Too_small_size END=85291749;SVTYPE=DEL;SVLEN=-39 TR:VR 31:15 28:0 chr16 88142773 d_592 T . PASS END=88142862;SVTYPE=DEL;SVLEN=-89 TR:VR 29:10 19:0 chr20 50910196 r_215_0 C [chr20:50938808[C . PASS SVTYPE=BND;MATEID=r_215_1 TR:VR 54:9 35:0 chr20 50938808 r_215_1 C [chr20:50910196[C . PASS SVTYPE=BND;MATEID=r_215_0 TR:VR 54:9 35:0 chr21 45896903 i_679 T . PASS END=45896903;SVTYPE=INS;SVINSLEN=355;SVINSSEQ=GGGCCATTGTCTCTGTAGGAAAGGCAGACATGGCACATAGAACCAGAGATGCACTGCCCGGGCCATTGTCTCTGTAGGAAAGGCGGCCGCGGCACATAGAACTGGAGACGCACTGCTCTGGGCCATTGTCTCTGTAGGAAAGGCGGACATGGCACATAGAACCGGAGATGCACTGCCCGGGCCATTGTCTCTGTAGGAAAGGCAGACATGGCACATAGGAACCGAGACGCACTGCCTGGGCCATTGTCTCTGTAGGAAAGGCAGACATGGCATAGAACCAGAGATGCACTGCCCGGGCCATTGTCTCTGTAGGAAAGGCAGACATGGCACATAGAACCGGGAGATGCACTGCCCG TR:VR 52:8 10:0 chr5 154825428 d_1164 G . PASS END=154825972;SVTYPE=DEL;SVLEN=-544;SVINSLEN=258;SVINSSEQ=TGGGCAGGTTATGAGGTCAGGAGATTGAGACCATCCTGGCTAACATGGTGAAACCTCGTCTCTACGAAAAATACAAAAACTTAGCTAGGCGTGGTGGCATGCACTTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATCACTTGAATCCGGGAGGCGGAGGTTGTAGTGAGCCACCGAGATCATGCCACTGCACTCTAGCCTCGGTGACAGAGCAAGACTCCATCTCAAAAAAAAAGGCAGGCCGGTGCTGCC TR:VR 19:10 24:0 chr12 8607751 r_97_0 A A]chr4:145491622] . PASS SVTYPE=BND;MATEID=r_97_1 TR:VR 63:14 32:0 chr4 145491622 r_97_1 G G]chr12:8607751] . PASS SVTYPE=BND;MATEID=r_97_0 TR:VR 63:14 32:0 chr20 53801055 d_893 G . Too_small_size END=53801097;SVTYPE=DEL;SVLEN=-42 TR:VR 44:4 9:0 chr5 156867379 r_274_0 C [chr5:156869796[C . PASS SVTYPE=BND;MATEID=r_274_1 TR:VR 35:16 9:0 chr5 156869796 r_274_1 C [chr5:156867379[C . PASS SVTYPE=BND;MATEID=r_274_0 TR:VR 35:16 9:0 chr6 114229873 i_927 C . Too_small_size END=114229873;SVTYPE=INS;SVINSLEN=39;SVINSSEQ=CTGTGAAGGATGAGCAACTTAACAAATAGCACTAATGGC TR:VR 17:10 20:0 chr8 130926811 r_334 A . PASS END=130935856;SVTYPE=DUP;SVLEN=9045 TR:VR 82:9 25:0 chr1 2684416 d_12 G . Too_small_size END=2684395;SVTYPE=INS;SVINSLEN=60;SVINSSEQ=CCTGGAACAGCTCCCTGCACCCTCAGGTGCGCACGTGACAGCCTGGAACAGCACCCACAC TR:VR 128:7 45:1 chr12 86662812 r_111_0 G ]chr2:177935922]TTGATCATGGAGCAT . PASS SVTYPE=BND;MATEID=r_111_1;SVINSLEN=14;SVINSSEQ=TTGATCATGGAGCA TR:VR 65:15 38:0 chr2 177935922 r_111_1 T TTGCTCCATGATCAA[chr12:86662812[ . PASS SVTYPE=BND;MATEID=r_111_0;SVINSLEN=14;SVINSSEQ=TGCTCCATGATCAA TR:VR 65:15 38:0 chr15 73946862 r_134_0 T T[chr22:36335629[ . PASS SVTYPE=BND;MATEID=r_134_1 TR:VR 50:8 25:0 chr22 36335629 r_134_1 C ]chr15:73946862]C . PASS SVTYPE=BND;MATEID=r_134_0 TR:VR 50:8 25:0 chr20 55191835 d_894 A . PASS END=55191898;SVTYPE=DEL;SVLEN=-63 TR:VR 21:4 11:0 chr5 157257829 r_275 C . PASS END=158982364;SVTYPE=DEL;SVLEN=-1724535 TR:VR 75:24 33:0 chr8 43421342 d_1303 G . PASS END=43422486;SVTYPE=DEL;SVLEN=-1144 TR:VR 38:16 15:0 chr10 124989213 r_64_0 C C[chr21:43958067[ . PASS SVTYPE=BND;MATEID=r_64_1 TR:VR 97:35 29:0 chr21 43958067 r_64_1 G ]chr10:124989213]G . PASS SVTYPE=BND;MATEID=r_64_0 TR:VR 97:35 29:0 chr12 109129665 r_114 C . PASS END=109133050;SVTYPE=DUP;SVLEN=3385 TR:VR 52:9 17:0 chr12 86662801 r_112_0 T T[chr2:177935935[ . PASS SVTYPE=BND;MATEID=r_112_1 TR:VR 66:12 38:0 chr2 177935935 r_112_1 C ]chr12:86662801]C . PASS SVTYPE=BND;MATEID=r_112_0 TR:VR 66:12 38:0 chr17 60165219 r_160_0 T [chr4:55169522[G . PASS SVTYPE=BND;MATEID=r_160_1 TR:VR 72:11 36:0 chr4 55169522 r_160_1 G [chr17:60165219[G . PASS SVTYPE=BND;MATEID=r_160_0 TR:VR 72:11 36:0 chr18 75525410 d_653 T . Too_small_size END=75525446;SVTYPE=DEL;SVLEN=-36 TR:VR 19:13 14:0 chr2 209654068 r_205 T . PASS END=210220471;SVTYPE=DUP;SVLEN=566403 TR:VR 53:12 40:0 chr3 11081 d_987 G . Too_low_VAF END=11296;SVTYPE=DEL;SVLEN=-215;SVINSLEN=13;SVINSSEQ=CAGAGAGGCGCGC TR:VR 241:3 196:1 chr5 157329033 r_276_0 A [chr5:161355735[T . PASS SVTYPE=BND;MATEID=r_276_1 TR:VR 48:12 31:0 chr5 161355735 r_276_1 T [chr5:157329033[T . PASS SVTYPE=BND;MATEID=r_276_0 TR:VR 48:12 31:0 chr6 116579046 d_1202 T . Too_small_size END=116579088;SVTYPE=DEL;SVLEN=-42 TR:VR 20:14 18:0 chr10 125560705 d_258 G . PASS END=125564953;SVTYPE=DEL;SVLEN=-4248 TR:VR 50:4 19:0 chr12 88398986 r_113 T . PASS END=96643146;SVTYPE=DEL;SVLEN=-8244160 TR:VR 57:10 40:0 chr2 214113376 d_834 G . PASS END=214122130;SVTYPE=DEL;SVLEN=-8754 TR:VR 20:7 15:0 chr2 88181564 i_466 T . PASS END=88181564;SVTYPE=INS;SVINSLEN=99;SVINSSEQ=CCCTCTCTCTCCCCTCTCTCTCCCTCTCTCTCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCCTCTCTCTCCCTCTCTCTCCCTCTAGAAAAGGAGC TR:VR 59:3 65:1 chr20 28780345 d_853 A . Too_low_VAF END=28780455;SVTYPE=INS;SVINSLEN=112;SVINSSEQ=AAAGATAGGTTCAACTCTCTGAGTTGAATGCATACATCATAAAGAAGTATCTCAGAATGCTTTTGTGAAGTTTTTACGTGAAGATATTTCCTTTTCCACCAAGTAGTCCTGA TR:VR 204:6 99:1 chr20 60466092 d_895 A . PASS END=60466148;SVTYPE=DEL;SVLEN=-56 TR:VR 41:10 15:0 chr5 158922423 r_277_0 A A]chr5:160947496] . PASS SVTYPE=BND;MATEID=r_277_1 TR:VR 53:14 43:0 chr5 160947496 r_277_1 T T]chr5:158922423] . PASS SVTYPE=BND;MATEID=r_277_0 TR:VR 53:14 43:0 chr7 21198074 d_1225 A . PASS END=21198200;SVTYPE=DEL;SVLEN=-126 TR:VR 32:16 11:0 chr9 137819349 i_1135 C . PASS END=137819349;SVTYPE=INS;SVINSLEN=419;SVINSSEQ=TGAGGCGCCGTGTACCGAGACCGTAGAGAGGCCGATTGAGGGGCGCCGTGTACCGAGACTGTAGAGAGGCCGACTTAGAGAGCGCCGTGTACCGAGACTGTAGAGAGGCCGATTGAGGGGCGCCGTGTACCGAGACCGTAGAGAGGCCGACTGAGGGGCGCCGTGTACCGAGACCGTAGAGAGGCCGACTGAGGGGCGCCGTGTACCGAGACTGTAGAGAGGCCGACTTAGGGGCGCCGTGTACCGAGACTGTAGAGAGGCCGATTGAGGGGCGCCATGTACCGAGACCGTAGGAGAGGCCGACTGAGGGGCGCCGTGTACCGAGACCGTAGAGGCCGATTGAGGGGCGCCGTGTACCGAGACTGTAGAGAGGCCGACTTAGGGGCGCCGTGTACCGAGACCGTAGAGAGAGGCCGATT TR:VR 22:3 11:0 chr1 21291958 r_9 T . PASS END=21396772;SVTYPE=DUP;SVLEN=104814 TR:VR 69:9 37:0 chr12 111070278 d_312 G . PASS END=111070476;SVTYPE=DEL;SVLEN=-198 TR:VR 40:11 24:0 chr15 84794106 d_492 G . PASS END=84794617;SVTYPE=DEL;SVLEN=-511 TR:VR 23:14 11:0 chr3 11162 d_989 G . Too_low_VAF END=11290;SVTYPE=DEL;SVLEN=-128;SVINSLEN=14;SVINSSEQ=CAGGCGCAGAGAGG TR:VR 97:4 72:1 chr1 214053304 r_33 A . Too_low_VAF END=214873795;SVTYPE=DUP;SVLEN=820491 TR:VR 96:3 39:0 chr15 88249647 d_493 G . PASS END=88249744;SVTYPE=DEL;SVLEN=-97 TR:VR 22:13 13:0 chr5 15926200 d_1124 T . PASS END=15926346;SVTYPE=DEL;SVLEN=-146;SVINSLEN=19;SVINSSEQ=TGCTTAATTTAGGATTAGC TR:VR 39:3 18:0 chr8 48757850 r_326 T . PASS END=48771112;SVTYPE=DEL;SVLEN=-13262 TR:VR 42:10 34:0 chr12 963009 r_94 C . PASS END=990311;SVTYPE=DUP;SVLEN=27302 TR:VR 84:9 27:0 chr15 98771469 r_135_0 A ]chr3:173189291]GTGAATAAAGCT . PASS SVTYPE=BND;MATEID=r_135_1;SVINSLEN=11;SVINSSEQ=GTGAATAAAGC TR:VR 63:14 33:0 chr3 173189291 r_135_1 T TGCTTTATTCAC[chr15:98771469[ . PASS SVTYPE=BND;MATEID=r_135_0;SVINSLEN=11;SVINSSEQ=GCTTTATTCAC TR:VR 63:14 33:0 chr3 99660615 r_233 T . Too_low_VAF END=100729511;SVTYPE=DUP;SVLEN=1068896 TR:VR 66:3 31:0 chr6 139315488 r_300 T . PASS END=139848965;SVTYPE=DUP;SVLEN=533477 TR:VR 58:10 32:0 chr1 31003794 d_24 C . PASS END=31004027;SVTYPE=DEL;SVLEN=-233 TR:VR 36:15 24:0 chr12 98009314 d_308 C . Too_small_size END=98009349;SVTYPE=DEL;SVLEN=-35 TR:VR 37:13 14:0 chr17 10860625 d_608 A . PASS END=10860684;SVTYPE=DEL;SVLEN=-59 TR:VR 24:11 17:0 chr17 67260673 d_624 C . Too_small_size END=67260713;SVTYPE=DEL;SVLEN=-40 TR:VR 37:11 10:0 chr3 99859164 r_234 A . PASS END=99865292;SVTYPE=DUP;SVLEN=6128 TR:VR 50:7 28:0 chr6 149676342 d_1203 C . PASS END=149676566;SVTYPE=DEL;SVLEN=-224 TR:VR 20:12 23:0 chr6 74382379 d_1197 T . PASS END=74384811;SVTYPE=DEL;SVLEN=-2432 TR:VR 42:4 24:0 chr7 155406882 i_983 C . PASS END=155406882;SVTYPE=INS;SVINSLEN=357;SVINSSEQ=GGAGTGTGGAGCTGTGGGAGTGTGGGAGTGTGGGAGTGTGGGGTGTGGAGTGTGGGTGAGTGTGGGGTGTGGGAGTGTGGGGTGTGAGAGTGTGGGTGTGAGTGTGGAGTGTGAGGTGTGGGAGTGTGGAGTGTGGAGTGTGGGAGTGGTGAGTGTGATAGGGTGTGGGAGTGTGGAGTGTGGAGTGTGGGAGTGTGGGGTGTGAGTGTGTGGTGTGAGAGTGTGGGGTGTGGTGAGTGTGGGGTGTGAGAGTGTGGGTGTGGGGTGTGGGAGTGTGGGGTGTGAGAGTGTGGCTGTGTGAGTGTGGGGTGTGGGAGTGTGGGTGTGTGGAGTGTGGAGTGTGGAGTGTGAGAGTGT TR:VR 37:6 20:0 chr7 37380105 d_1228 G . PASS END=37384442;SVTYPE=DEL;SVLEN=-4337 TR:VR 40:3 13:0 chr8 48933005 r_327 T . PASS END=48940919;SVTYPE=DUP;SVLEN=7914 TR:VR 70:16 21:0