##fileformat=VCFv4.3 ##fileDate=20230117 ##source=nanomonsv-0.5.0 ##reference=/projects/jfan_prj/jfan_prj/Nanopore_Testing/2021_nanopore_sv_testing/scratch/depth_testing/POG/COLO829/hg38_no_alt.fa ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##FILTER= ##FILTER= ##FILTER= ##FILTER= ##FILTER= ##FILTER= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##ALT= ##ALT= ##ALT= ##FORMAT= ##FORMAT= #CHROM POS ID REF ALT QUAL FILTER INFO FORMAT TUMOR CONTROL chr1 173094471 r_23_0 A A]chr1:185173615] . PASS SVTYPE=BND;MATEID=r_23_1 TR:VR 123:11 64:0 chr1 185173615 r_23_1 A A]chr1:173094471] . PASS SVTYPE=BND;MATEID=r_23_0 TR:VR 123:11 64:0 chr14 95379595 r_129_0 T T[chr3:95618039[ . PASS SVTYPE=BND;MATEID=r_129_1 TR:VR 80:6 41:0 chr3 95618039 r_129_1 T ]chr14:95379595]T . PASS SVTYPE=BND;MATEID=r_129_0 TR:VR 80:6 41:0 chr17 11706092 i_403 A . PASS END=11706176;SVTYPE=INS;SVINSLEN=698;SVINSSEQ=GTGACAGTCAATATATTGGCAGAGCCTGACAATAATGTGCCCTCACAAATTATCTGTCCTGAAGCTGAACTTAAAATTCAATTAATGGATGACATAAATTTTGTTCCCTAAACTGGAATAAAACTGATGACCTAAAACAAGGTAGAAAGATCCACTGTCTCTTTTCCGTGATTTGTCTCTGGATAAAAGACTAATCTACATCACTTCAAAATGGTAGTCTTGATTCCTCAGCATGGATCCAACTTAGGAAGGTCCTATTGCTTTCCTTTACCCTAAATTGGTACAGGAAAGCCCCCACAATATTTGAAATGTATGAAAGCTAAATGTAGAGAAGTCAAATAGCAAAGGTGTATGTTCTTATTGAGAATACTTTTCCCAGAAAGATTAAAATATTAACAATTATAAAATCCCATTATTTTCACTCTATAGGTCCTACCTTATTCAGGTCCACATAAACTAGCAAGCCCTTAAAAATTTTCATAGGCACTCAGACACCCAAGGAGAGAGACTGCGAGAAAAGAAACAGAGTCATGATAGTTGTACCTCTATTTCCTAAGTACTATCTAAGTATCTTTCTTCCTATGGACACCCACTTCCAGATTCTACTTCTGCAGGGTTCCACAGAAGTCTCCAATCTTCAAATCTTCAGTGTATGAAAGCACAGATTCCTGAAAGAATGGCCTCAAATGACCAAGAGT TR:VR 31:23 22:0 chr2 107026540 r_275_0 G [chr3:77276221[A . Too_low_VAF SVTYPE=BND;MATEID=r_275_1 TR:VR 99:4 56:0 chr3 77276221 r_275_1 A [chr2:107026540[A . Too_low_VAF SVTYPE=BND;MATEID=r_275_0 TR:VR 99:4 56:0 chr2 23143752 r_207 G . PASS END=27574591;SVTYPE=DEL;SVLEN=-4430839 TR:VR 56:3 43:0 chr2 60126525 d_719 G . PASS END=60127031;SVTYPE=DEL;SVLEN=-506 TR:VR 64:25 39:0 chr20 50418404 d_944 A . PASS END=50426717;SVTYPE=DEL;SVLEN=-8313 TR:VR 62:5 39:0 chr22 36126366 i_756 C . PASS END=36126366;SVTYPE=INS;SVINSLEN=411;SVINSSEQ=TTCCTCTCTCTCCTCTCTCTCCTTCCTCTCTCTCCTTCCTTCTCCTTCCTTCCTCTCCCTCCTCTCCTCTCTTCCTCTCCTCCTCTCCTCCCTCTCCTCTCCCTCCTTTCATTCCTCTCTCTCCCTCCTTTCTCTCCTTCCTCTCTCTCCTTTTCTCTCTCTTCCTCTCCCTTCTTTTCTTCCTCCTCTCCCTCCTTTTCTTCCTTCCTCTCCCTCCTTTCATTCCTTCCTCTCTCCCTTTTCTTCCTTCCTCTCCCTCCTTTTCTCTCCCTTCCTCTCCCTCCCTTTCTTCTTCTTTCCTCTCTCCCTCCCTCCTTTCTTTCCTTCCTCTCCTCCTTTTCTTCCTTCCCTCTCCCTCCTTTCCTCCTTCCTCTCCCTCCTTTCTTTCTCCCTTCCTCTCCCTCCCTTTTC TR:VR 37:6 29:0 chr3 155699409 r_347 T . PASS END=155875025;SVTYPE=DEL;SVLEN=-175616 TR:VR 82:9 68:0 chr6 16099921 i_1005 A . Too_small_size END=16099922;SVTYPE=INS;SVINSLEN=41;SVINSSEQ=AGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGGAA TR:VR 42:4 18:0 chr7 152112723 r_391 T . PASS END=152307919;SVTYPE=DUP;SVLEN=195196 TR:VR 59:3 58:0 chr1 101126412 r_10_0 G ]chr20:8078680]T . PASS SVTYPE=BND;MATEID=r_10_1 TR:VR 112:14 45:0 chr20 8078680 r_10_1 T T[chr1:101126412[ . PASS SVTYPE=BND;MATEID=r_10_0 TR:VR 112:14 45:0 chr1 173186882 r_24_0 A [chr1:182090846[A . PASS SVTYPE=BND;MATEID=r_24_1 TR:VR 111:10 44:0 chr1 182090846 r_24_1 A [chr1:173186882[A . PASS SVTYPE=BND;MATEID=r_24_0 TR:VR 111:10 44:0 chr10 36465979 i_99 G . PASS END=36465979;SVTYPE=INS;SVINSLEN=129;SVINSSEQ=TTTGTGCACATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTTTTTTTTTTTTTTTTTTTTTTTTTTTTATTATACTCTAAGTT TR:VR 39:7 31:0 chr16 47311526 d_592 T . PASS END=47312197;SVTYPE=DEL;SVLEN=-671;SVINSLEN=1;SVINSSEQ=A TR:VR 32:3 26:0 chr18 4938980 r_170_0 A A]chr8:90322196] . PASS SVTYPE=BND;MATEID=r_170_1 TR:VR 103:10 64:0 chr8 90322196 r_170_1 G G]chr18:4938980] . PASS SVTYPE=BND;MATEID=r_170_0 TR:VR 103:10 64:0 chr2 10718679 r_195 G . PASS END=51916125;SVTYPE=DUP;SVLEN=41197446 TR:VR 74:12 50:0 chr2 61031160 r_250 A . PASS END=62012698;SVTYPE=DEL;SVLEN=-981538 TR:VR 126:18 54:0 chr6 162626603 r_369 T . PASS END=162967161;SVTYPE=DUP;SVLEN=340558 TR:VR 80:9 55:0 chr10 102504878 r_67_0 G [chr10:118322716[C . PASS SVTYPE=BND;MATEID=r_67_1 TR:VR 74:4 54:0 chr10 118322716 r_67_1 C [chr10:102504878[C . PASS SVTYPE=BND;MATEID=r_67_0 TR:VR 74:4 54:0 chr10 38294738 r_55_0 C C[chr20:23432225[ . Too_low_VAF SVTYPE=BND;MATEID=r_55_1 TR:VR 106:3 63:1 chr20 23432225 r_55_1 A ]chr10:38294738]A . Too_low_VAF SVTYPE=BND;MATEID=r_55_0 TR:VR 106:3 63:1 chr14 96511908 d_387 A . PASS END=96512026;SVTYPE=DEL;SVLEN=-118 TR:VR 38:11 23:0 chr18 4952866 r_171 C . Too_low_VAF END=5124386;SVTYPE=DUP;SVLEN=171520 TR:VR 104:5 62:0 chr2 10722122 r_196_0 G G]chr2:44084457] . PASS SVTYPE=BND;MATEID=r_196_1 TR:VR 68:13 57:0 chr2 44084457 r_196_1 T T]chr2:10722122] . PASS SVTYPE=BND;MATEID=r_196_0 TR:VR 68:13 57:0 chr2 62494756 d_720 C . PASS END=62495447;SVTYPE=DEL;SVLEN=-691 TR:VR 83:9 25:0 chr10 102507239 r_68_0 G G]chr10:116556616] . PASS SVTYPE=BND;MATEID=r_68_1 TR:VR 54:3 48:0 chr10 116556616 r_68_1 G G]chr10:102507239] . PASS SVTYPE=BND;MATEID=r_68_0 TR:VR 54:3 48:0 chr11 67695936 r_87 G . PASS END=74566701;SVTYPE=DEL;SVLEN=-6870765 TR:VR 109:49 67:0 chr14 97679138 d_388 A . PASS END=97679230;SVTYPE=DEL;SVLEN=-92 TR:VR 24:4 27:0 chr15 26610791 d_493 T . PASS END=26611629;SVTYPE=DEL;SVLEN=-838 TR:VR 21:3 29:0 chr17 16369808 r_151_0 A A[chr2:31431156[ . PASS SVTYPE=BND;MATEID=r_151_1 TR:VR 53:11 61:0 chr2 31431156 r_151_1 C ]chr17:16369808]C . PASS SVTYPE=BND;MATEID=r_151_0 TR:VR 53:11 61:0 chr2 107394546 r_276_0 G G[chr3:76205377[ . PASS SVTYPE=BND;MATEID=r_276_1 TR:VR 88:10 48:0 chr3 76205377 r_276_1 A ]chr2:107394546]A . PASS SVTYPE=BND;MATEID=r_276_0 TR:VR 88:10 48:0 chr2 62730951 i_550 A . PASS END=62730996;SVTYPE=INS;SVINSLEN=165;SVINSSEQ=CAGGCAGAGAGAGAGAGACAGAGAGACGGACAGAGAGAGAGACAGGCAGAGAGAGAGAGACAGAGAGACAGACAGAGAGAGAGACAGGCAGAGAGAGAGAGAGAAACAGACAGACAGGGAGAGAGAGAGACTGACAGGCAGAGAAAGAGAATAAGACAGAAGACA TR:VR 80:8 35:1 chr22 41874057 d_1004 T . PASS END=41876332;SVTYPE=DEL;SVLEN=-2275 TR:VR 29:5 28:0 chr3 76640908 r_341_0 A A]chr3:76646640] . PASS SVTYPE=BND;MATEID=r_341_1 TR:VR 58:5 27:0 chr3 76646640 r_341_1 T T]chr3:76640908] . PASS SVTYPE=BND;MATEID=r_341_0 TR:VR 58:5 27:0 chr5 56788727 r_361 T . PASS END=180470036;SVTYPE=DEL;SVLEN=-123681309 TR:VR 78:11 55:0 chr8 100928195 i_1178 G . PASS END=100928196;SVTYPE=INS;SVINSLEN=81;SVINSSEQ=CGTGAACGAAAAAATTAGCCAGGTGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGACTGAGGCAGGAGAACAGCG TR:VR 86:28 30:0 chrX 134276189 d_1535 A . PASS END=134276298;SVTYPE=DEL;SVLEN=-109 TR:VR 42:8 33:0 chrY 56838929 i_1357 C . Too_low_VAF END=56838929;SVTYPE=INS;SVINSLEN=455;SVINSSEQ=ACGTGAGTTTTCACCTATCTCTACACTGACCCACCTAAGTGATGTAACCCTTGTCTAGTTGGAGCCTACTGGAGATTTCTGACATACCTATGCAAAGATCACCGAGGTGATGTAAATCATTTCCAGGCTTTTTTTTTTTTTTTTTTTTTTTTTGAGACGGAGTCTCACTCTGTCGCCCAGGCTGGAGTGCAGTGGCGGGATCTAGGCTCACTGCAAGCTCCGCCTCCCGGGTTCACGCCATTCTCCTGCCTCAGCCTCCCAAGTAGCTGGGACTACAGGCGCCCGCCACTACGCCTGGCTAATTTTTTGTATTTTTAGTAGAGACGGGGTTTCACCGTTTTAGCCGGGATGGTCTCGATCTCCTGACCTCGTGATCCGCCCGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCGCGCCCGGCCCATTTCCAGGCTTTTTGTACA TR:VR 293:3 303:1 chr10 108313642 r_69_0 C [chr5:47115700[AAGTTTCTGAGAATGCTTCTGACTAGTGTGTATGAAGATATCCCTTTTACAAAGAATTCCTCCAAGAGCTACAAATATCCACAAGCAGATTCTACAAAACAGGTGGTTCAAAACTGCTCAATCAAAAGAAAGAGTCAACCC . Too_low_VAF SVTYPE=BND;MATEID=r_69_1;SVINSLEN=140;SVINSSEQ=AAGTTTCTGAGAATGCTTCTGACTAGTGTGTATGAAGATATCCCTTTTACAAAGAATTCCTCCAAGAGCTACAAATATCCACAAGCAGATTCTACAAAACAGGTGGTTCAAAACTGCTCAATCAAAAGAAAGAGTCAACC TR:VR 178:4 72:0 chr5 47115700 r_69_1 C [chr10:108313642[GGTTGACTCTTTCTTTTGATTGAGCAGTTTTGAACCACCTGTTTTGTAGAATCTGCTTGTGGATATTTGTAGCTCTTGGAGGAATTCTTTGTAAAAGGGATATCTTCATACACACTAGTCAGAAGCATTCTCAGAAACTTC . Too_low_VAF SVTYPE=BND;MATEID=r_69_0;SVINSLEN=140;SVINSSEQ=GGTTGACTCTTTCTTTTGATTGAGCAGTTTTGAACCACCTGTTTTGTAGAATCTGCTTGTGGATATTTGTAGCTCTTGGAGGAATTCTTTGTAAAAGGGATATCTTCATACACACTAGTCAGAAGCATTCTCAGAAACTT TR:VR 178:4 72:0 chr11 69300032 r_88_0 C [chr5:44210422[G . PASS SVTYPE=BND;MATEID=r_88_1 TR:VR 178:85 67:0 chr5 44210422 r_88_1 G [chr11:69300032[G . PASS SVTYPE=BND;MATEID=r_88_0 TR:VR 178:85 67:0 chr14_GL000194v1_random 137784 r_130_0 C CT]chr4:49647822] . Too_low_VAF SVTYPE=BND;MATEID=r_130_1;SVINSLEN=1;SVINSSEQ=T TR:VR 260:11 245:0 chr4 49647822 r_130_1 A AA]chr14_GL000194v1_random:137784] . Too_low_VAF SVTYPE=BND;MATEID=r_130_0;SVINSLEN=1;SVINSSEQ=A TR:VR 260:11 245:0 chr18 5179319 r_172_0 A A]chr18:5655735] . PASS SVTYPE=BND;MATEID=r_172_1 TR:VR 90:7 67:0 chr18 5655735 r_172_1 C C]chr18:5179319] . PASS SVTYPE=BND;MATEID=r_172_0 TR:VR 90:7 67:0 chr2 63290337 r_251_0 T T]chr3:1760558] . PASS SVTYPE=BND;MATEID=r_251_1 TR:VR 147:16 44:0 chr3 1760558 r_251_1 T T]chr2:63290337] . PASS SVTYPE=BND;MATEID=r_251_0 TR:VR 147:16 44:0 chr2 91521727 d_829 T . Too_low_VAF END=91521933;SVTYPE=DEL;SVLEN=-206 TR:VR 229:9 180:1 chr8 143321421 i_1206 G . PASS END=143321422;SVTYPE=INS;SVINSLEN=214;SVINSSEQ=ACACACACCACACGACACCTAGCATGCACTCGCACTTTCTGTCCCTACGCACGCCACACACACGCACCCACACACTGCATGCTTGTACACCTTACACGCACGCCACACACACACATCCATCACACACATCCACTGTGCCTGTCTGTCTGCACGCCACACACACGCATGCCACACGCACGCACGCCACACGCACTCTGCACACATCACAGGCACG TR:VR 65:4 35:0 chr10 108316139 r_70_0 C CGGCCATCTTGGCTCCTC[chr5:13419020[ . Too_low_VAF SVTYPE=BND;MATEID=r_70_1;SVINSLEN=17;SVINSSEQ=GGCCATCTTGGCTCCTC TR:VR 104:4 55:1 chr5 13419020 r_70_1 C ]chr10:108316139]GAGGAGCCAAGATGGCCC . Too_low_VAF SVTYPE=BND;MATEID=r_70_0;SVINSLEN=17;SVINSSEQ=GAGGAGCCAAGATGGCC TR:VR 104:4 55:1 chr13 70312105 d_348 T . PASS END=70312162;SVTYPE=DEL;SVLEN=-57 TR:VR 19:6 30:0 chr16 69291756 d_593 A . Too_small_size END=69291802;SVTYPE=DEL;SVLEN=-46 TR:VR 32:8 36:0 chr18 5179367 r_173_0 A ]chr8:78254775]G . PASS SVTYPE=BND;MATEID=r_173_1 TR:VR 135:11 47:0 chr8 78254775 r_173_1 G G[chr18:5179367[ . PASS SVTYPE=BND;MATEID=r_173_0 TR:VR 135:11 47:0 chr2 109536259 r_277 A . PASS END=110115861;SVTYPE=DEL;SVLEN=-579602 TR:VR 66:6 63:0 chr2 64106477 r_252_0 T [chr2:68386327[T . PASS SVTYPE=BND;MATEID=r_252_1 TR:VR 109:6 52:0 chr2 68386327 r_252_1 T [chr2:64106477[T . PASS SVTYPE=BND;MATEID=r_252_0 TR:VR 109:6 52:0 chr22 44754770 r_330 A . PASS END=49645197;SVTYPE=DEL;SVLEN=-4890427;SVINSLEN=26;SVINSSEQ=TGGGTGAATGGAATGATGGGTGTATA TR:VR 68:4 60:0 chr8 75765217 d_1380 A . PASS END=75765958;SVTYPE=DEL;SVLEN=-741 TR:VR 69:26 30:0 chr1 177450478 r_25_0 G G]chr1:177450780] . PASS SVTYPE=BND;MATEID=r_25_1 TR:VR 59:16 22:0 chr1 177450780 r_25_1 A A]chr1:177450478] . PASS SVTYPE=BND;MATEID=r_25_0 TR:VR 59:16 22:0 chr13 70398923 r_120_0 A ]chr8:98086975]T . PASS SVTYPE=BND;MATEID=r_120_1 TR:VR 92:16 56:0 chr8 98086975 r_120_1 T T[chr13:70398923[ . PASS SVTYPE=BND;MATEID=r_120_0 TR:VR 92:16 56:0 chr15 45463128 i_309 A . PASS END=45463128;SVTYPE=INS;SVINSLEN=197;SVINSSEQ=CCACCATCACCACCATCACCATCACCACCACCACCACCACCACCACCACCACCATCACCACCATCACCACCACCATCACCACCACCACCACCACCACCACCACCACCACCACCATCATCACTACCACCACCATCACCATCACCACCACCACCACCACCACCATCACCACCATCACCATCACCACCACTACCACCACC TR:VR 87:5 66:0 chr16 75306122 r_144 T . PASS END=75378648;SVTYPE=DEL;SVLEN=-72526;SVINSLEN=16;SVINSSEQ=TCAAGCTCACAGCGTA TR:VR 52:4 55:0 chr18 52728363 r_185_0 C [chr8:65293669[A . Too_low_VAF SVTYPE=BND;MATEID=r_185_1 TR:VR 91:3 69:0 chr8 65293669 r_185_1 A [chr18:52728363[A . Too_low_VAF SVTYPE=BND;MATEID=r_185_0 TR:VR 91:3 69:0 chr2 64106515 r_253 G . PASS END=66295528;SVTYPE=DEL;SVLEN=-2189013 TR:VR 115:8 54:0 chr2 90393966 d_786 T . Too_low_VAF END=90394465;SVTYPE=DEL;SVLEN=-499;SVINSLEN=3;SVINSSEQ=CTT TR:VR 686:4 409:1 chr4 22004910 i_839 T . PASS END=22004910;SVTYPE=INS;SVINSLEN=112;SVINSSEQ=TAAGCCTCTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTATTATACTCTCAGTTTTAGGGTACATGTTGGAATACTATGCAGCCAT TR:VR 19:5 25:0 chr1 109256901 d_22 A . PASS END=109261025;SVTYPE=DEL;SVLEN=-4124 TR:VR 40:7 33:0 chr1 177450484 r_26_0 C ]chr3:1430637]T . PASS SVTYPE=BND;MATEID=r_26_1 TR:VR 155:16 38:0 chr3 1430637 r_26_1 T T[chr1:177450484[ . PASS SVTYPE=BND;MATEID=r_26_0 TR:VR 155:16 38:0 chr1 245103455 i_72 G . PASS END=245103455;SVTYPE=INS;SVINSLEN=1422;SVINSSEQ=GAGGGGGGACCAGACAGGCCAAGCATTGTTTATTTCAGTCCTCCACCCTGTGAGGCTGACGAGGATCAGAGGTGGTCCTCTGTGGTCAGGAGGGGGGACCAGAGAGGCCAAGCATTGTTTATTTCAGTCCTCCACCCTGTGAGGCTGAGGAGGATGAGAGGTGGTCCTCTGTGGTCAGGAGGGGGGACCAGAGAGGCCAAGCATTGTTTATTTCAGTCCTCCACCCTGTGAGGCTGACGAGGATGAGAGGTGGTCCTCTATGGTCAGGAGGGGGGACCAGAGAGGCCAAGCATTGTTTATTTCAGTCCTCCACCCTGTGAGGCTGAGGAGGATCAGAGGTGGTCCTCTATGGTCAGGAGGGAGACCAGAGAGGCCAAGCATTGTTTATTTCAGTCCCCCACCCTGTGAGGCTGAGGAGGATGAGAGGTGGTCCTCTATGGTCAGGAGGGGGGACCAGAGAGGCCAAGCATTGTTTATTTCAGTCCCCCACCCTGTGAGGCTGAGGAGGATCAGAGGTGGTCCTCTATGGTCAGGAGGGGGGACCAGAGAGGCCAAGCATTGTTTATTTCAGTCCTCCACCCTGTGAGGCTGAGGAGGATCAGAGGTGGTCCTCTATGGTCAGGAGGGAGACCAGAGAGGCCAAGCATTGTTTATTTCAGTCCTCCACCCTGTGAGGCTGAGGAGGATGAGAGGTGGTCCTCTGTGGTCAGGAGGGGGGACCAGAGAGGCCAAGCATTGTTTATTTCAGTCCTCCACCCTGTGAGGCTGACGAGGATGAGAGGTGGTCCTCTATGGTCAGGAGGGGGGACCAGAGAGGCCAAGCATTGTTTATTTCAGTCCTCCACCCTGTGAGGCTGAGGAGGATCAGAGGTGGTCCTCCATGGTCAGGAGGGAGACCAGAGAGGCCAAGCATTGTTTATTTCTTAGTCCTCCACCCTGTGAGGCTGAGGAGGATGAGAGGTGGTCCTCTATGGTCAGGAGGGGGGACCAGAGAGGCCAAGCATTGTTTATTTCAGTCCTCCACCCTGTGAGGCTGAGGAGGATCAGAGGTGGTCCTCTATGGTCAGGAGGGGGACCAGAGAGGCCAAGCATTGTTTATTTCAGTCCTCCACCCTGTGAGGCTGAGGAGGATGAGAGGTGGTCCTCTATGGTCAGGAGGGGGGACCAGAGAGGCCAAGCATTGTTTATTTCAGTCCTCCACCCTGTGAGGCTGACGAGGATGAGAGGTGGTCCTCTATGGTCAGGAGGGAGACCAGAGAGGCCAAGCATTGTTTATTTCAGTCCTCCACCCTGTGAGGCTGACGAGGATCAGAGGTGGTCCTCTATGGTCAGGAGGGAGACCAGAGAGGCCAAGCATTGTTTATTTCAGTCCTCCACCCTGTGAGGCTGAGGAGGATCAGAGGTGGTCCTCTATGGTCAGAG TR:VR 52:3 19:0 chr11 70708171 r_89_0 G G[chr5:41943023[ . PASS SVTYPE=BND;MATEID=r_89_1 TR:VR 175:72 57:0 chr5 41943023 r_89_1 C ]chr11:70708171]C . PASS SVTYPE=BND;MATEID=r_89_0 TR:VR 175:72 57:0 chr13 70399948 r_121_0 A A[chr8:97917587[ . PASS SVTYPE=BND;MATEID=r_121_1 TR:VR 90:16 43:0 chr8 97917587 r_121_1 G ]chr13:70399948]G . PASS SVTYPE=BND;MATEID=r_121_0 TR:VR 90:16 43:0 chr14_GL000225v1_random 56445 d_414 A . Too_low_VAF END=56439;SVTYPE=INS;SVINSLEN=133;SVINSSEQ=GACAAGAGTTACACATCTCCTGGGTGATCAGTACAAAGATATGTCACAAAGCACCCCTGTAGACAAATCACACAAAATTTTTACATCACCTGGGTGATCAGTGGAGATATCTGACACAATTCCCTTTAGGTGC TR:VR 561:5 658:0 chr18 52730910 r_186_0 A A[chr8:81104807[ . Too_low_VAF SVTYPE=BND;MATEID=r_186_1 TR:VR 100:3 59:0 chr8 81104807 r_186_1 G ]chr18:52730910]G . Too_low_VAF SVTYPE=BND;MATEID=r_186_0 TR:VR 100:3 59:0 chr19 34390567 i_509 G . PASS END=34390569;SVTYPE=INS;SVINSLEN=337;SVINSSEQ=ATCTGGGTCTTTCCATATCTGAGGAGGTAGGATAGGATCTGGGTCTGTCCATGTCTGAGGAGGTAGGATCTGGCATTGAATATGAGGATCTGGGTCTGTCAATATCTGAAGAGGTAGGAATCTGGTGCAGGTATAAGATCTGCATCTGTCAATGTCTGAGGAGGTAGGATCTGGCCCTGGTATGAGGATCTGGGTCTGTCAATGTCTGAGAGGTTGGATCTTGTACAAGTATGAGGATCTGGGTCTGTCCATGTCTGAGGAGGTAGGATGGGTGGCACATGTCTGAGGATCTGGATCTGTCTATGTCTCCCCCAGGTCTGGAGCAGGTATAAGGATC TR:VR 51:5 46:1 chr2 66698452 r_254_0 G G[chr3:76641038[ . PASS SVTYPE=BND;MATEID=r_254_1 TR:VR 80:9 48:0 chr3 76641038 r_254_1 C ]chr2:66698452]C . PASS SVTYPE=BND;MATEID=r_254_0 TR:VR 80:9 48:0 chr8 77235725 i_1173 C . PASS END=77235725;SVTYPE=INS;SVINSLEN=57;SVINSSEQ=TAATTTTGCTTTTTTTTTTTTTTTTTTTTTTTTTTTATTATACTCTATGTGGCACAT TR:VR 63:10 26:0 chr9 16089466 d_1420 G . PASS END=16090695;SVTYPE=DEL;SVLEN=-1229 TR:VR 30:4 30:0 chr1 177938208 r_27_0 C ]chr17:44669292]T . PASS SVTYPE=BND;MATEID=r_27_1 TR:VR 101:10 48:0 chr17 44669292 r_27_1 T T[chr1:177938208[ . PASS SVTYPE=BND;MATEID=r_27_0 TR:VR 101:10 48:0 chr10 111840420 r_71_0 A [chr14:28968572[G . Too_low_VAF SVTYPE=BND;MATEID=r_71_1 TR:VR 80:3 53:0 chr14 28968572 r_71_1 G [chr10:111840420[G . Too_low_VAF SVTYPE=BND;MATEID=r_71_0 TR:VR 80:3 53:0 chr11 134928148 d_272 G . PASS END=134928123;SVTYPE=INS;SVINSLEN=119;SVINSSEQ=CTGATTGCTAACCAGTGTTGAGGCATGTGGTCATAGTTGATTGCTAACCAGCGTTGAGGCAGGTGGTGATAGTTGATTGCTAACCAGTGTTGAGGTAAGTGGTCATAGTTGATTGCTAA TR:VR 60:3 22:0 chr11 74580147 r_90_0 A [chr11:74580222[G . PASS SVTYPE=BND;MATEID=r_90_1 TR:VR 110:37 31:0 chr11 74580222 r_90_1 G [chr11:74580147[G . PASS SVTYPE=BND;MATEID=r_90_0 TR:VR 110:37 31:0 chr13 77299503 d_349 A . PASS END=77299600;SVTYPE=DEL;SVLEN=-97 TR:VR 21:5 31:0 chr2 66769580 r_255_0 C [chr2:66775602[T . PASS SVTYPE=BND;MATEID=r_255_1 TR:VR 57:3 34:0 chr2 66775602 r_255_1 T [chr2:66769580[T . PASS SVTYPE=BND;MATEID=r_255_0 TR:VR 57:3 34:0 chr20 57531002 d_947 T . PASS END=57531051;SVTYPE=DEL;SVLEN=-49 TR:VR 50:9 21:0 chr22 45354315 d_1005 T . PASS END=45354416;SVTYPE=DEL;SVLEN=-101 TR:VR 32:9 32:0 chr3 90472170 i_786 C . PASS END=90472170;SVTYPE=INS;SVINSLEN=221;SVINSSEQ=TAGGAAAAAGTAGTTGCAGATTTACTGAAAAGAGTGTTTCAAAACTGCTCTATGAAAATGTATGTTCAACACTGAGAATTGAATGCAAACATCTCAAAGAAGTTTCTGAAAATCCTACTGTCAAGTTTTTGTGTGTAGATATTTCTTTTTCCACAATAGTCCCCAAAGCTCTCCAAATGTCCACTTGCAGATTCTACAAAAAGCGTGTTTCAAAACTGCTC TR:VR 45:8 28:0 chr11 74580218 r_91 G . PASS END=133081421;SVTYPE=DEL;SVLEN=-58501203 TR:VR 158:39 63:0 chr13 80420439 i_243 T . PASS END=80420439;SVTYPE=INS;SVINSLEN=234;SVINSSEQ=CTCCCCACTTCTCACCATCTATCCCATTATCTACCCCCATCTCCCTGCCTCTCCCCCCATCTCCCCTTCTCTCCCCTTCTCCCCACTTCTCGACTCCCCTTCTCCCCATCTTCTCCCCGTCTCCCCACTTCTCCCACATATCCCCACTTCTCCCCCATCTCCCCACTTCTCTCATCTCCCCTTCTCCCCACTTCTCCCCCATTCCCCACTTCTCCCCATCTTTCATCTCCCCAC TR:VR 27:3 21:0 chr15 51621149 d_495 A . PASS END=51621332;SVTYPE=DEL;SVLEN=-183 TR:VR 36:8 33:0 chr2 113988840 r_278_0 T T[chr3:75325045[ . PASS SVTYPE=BND;MATEID=r_278_1 TR:VR 68:14 59:0 chr3 75325045 r_278_1 T ]chr2:113988840]T . PASS SVTYPE=BND;MATEID=r_278_0 TR:VR 68:14 59:0 chr2 68386066 r_256 T . PASS END=89102111;SVTYPE=DEL;SVLEN=-20716045 TR:VR 91:5 59:0 chr20 60314989 i_703 C . PASS END=60315005;SVTYPE=INS;SVINSLEN=196;SVINSSEQ=ATCTATCCATCCATCCTCCATCCATCCTCCCATCCTCCCATCCATTCTCCCATTCATCCATCCATCCATCCATTCCTCCTATCCATCCATCCATCCATCCACCTCCATCCATCCATCCATCCCATCCATCCATCCTTCCATCCATCCATCCACCCACCCTTCCATCCATCCACCCTCCATCCATCCATCCTCCCAT TR:VR 44:3 30:0 chr3 1839056 r_335_0 T T]chr3:80029642] . PASS SVTYPE=BND;MATEID=r_335_1 TR:VR 95:12 52:0 chr3 80029642 r_335_1 T T]chr3:1839056] . PASS SVTYPE=BND;MATEID=r_335_0 TR:VR 95:12 52:0 chr5 102054661 d_1255 C . PASS END=102055351;SVTYPE=DEL;SVLEN=-690 TR:VR 33:6 22:0 chr8 77448052 r_405_0 T [chr8:79251868[AAAAATCCCAAATATCAACTATCTTTTAC . PASS SVTYPE=BND;MATEID=r_405_1;SVINSLEN=28;SVINSSEQ=AAAAATCCCAAATATCAACTATCTTTTA TR:VR 161:9 65:0 chr8 79251868 r_405_1 C [chr8:77448052[TAAAAGATAGTTGATATTTGGGATTTTTC . PASS SVTYPE=BND;MATEID=r_405_0;SVINSLEN=28;SVINSSEQ=TAAAAGATAGTTGATATTTGGGATTTTT TR:VR 161:9 65:0 chr9 18069009 r_433_0 C [chr9:23202404[G . PASS SVTYPE=BND;MATEID=r_433_1 TR:VR 61:6 54:0 chr9 23202404 r_433_1 G [chr9:18069009[G . PASS SVTYPE=BND;MATEID=r_433_0 TR:VR 61:6 54:0 chrX 73108666 r_438_0 A [chrY:9941132[G . Too_low_VAF SVTYPE=BND;MATEID=r_438_1 TR:VR 76:3 45:1 chrY 9941132 r_438_1 G [chrX:73108666[G . Too_low_VAF SVTYPE=BND;MATEID=r_438_0 TR:VR 76:3 45:1 chr1 118522829 r_11 A . PASS END=118777852;SVTYPE=DEL;SVLEN=-255023 TR:VR 81:11 56:0 chr10 113294926 r_72_0 A [chr10:118325488[G . PASS SVTYPE=BND;MATEID=r_72_1 TR:VR 72:6 60:0 chr10 118325488 r_72_1 G [chr10:113294926[G . PASS SVTYPE=BND;MATEID=r_72_0 TR:VR 72:6 60:0 chr13 82328754 d_350 T . PASS END=82329401;SVTYPE=DEL;SVLEN=-647;SVINSLEN=2;SVINSSEQ=TA TR:VR 26:10 26:0 chr16 34948215 d_538 G . Too_small_size END=34948205;SVTYPE=INS;SVINSLEN=13;SVINSSEQ=ATGATTCCTTTTG TR:VR 71:8 39:1 chr18 5615864 r_174_0 C ]chr8:89135773]ATGAAGGAGATACTGGCT . Too_low_VAF SVTYPE=BND;MATEID=r_174_1;SVINSLEN=17;SVINSSEQ=ATGAAGGAGATACTGGC TR:VR 102:5 57:0 chr8 89135773 r_174_1 T TGCCAGTATCTCCTTCAT[chr18:5615864[ . Too_low_VAF SVTYPE=BND;MATEID=r_174_0;SVINSLEN=17;SVINSSEQ=GCCAGTATCTCCTTCAT TR:VR 102:5 57:0 chr2 124326689 r_279_0 C ]chr3:78473341]G . PASS SVTYPE=BND;MATEID=r_279_1 TR:VR 88:25 54:0 chr3 78473341 r_279_1 G G[chr2:124326689[ . PASS SVTYPE=BND;MATEID=r_279_0 TR:VR 88:25 54:0 chr2 69914555 r_257_0 C C[chr8:81578207[ . Too_low_VAF SVTYPE=BND;MATEID=r_257_1 TR:VR 104:4 54:0 chr8 81578207 r_257_1 T ]chr2:69914555]T . Too_low_VAF SVTYPE=BND;MATEID=r_257_0 TR:VR 104:4 54:0 chr8 108265658 d_1386 T . Too_low_VAF END=108265896;SVTYPE=DEL;SVLEN=-238 TR:VR 71:3 26:0 chr8 77497510 r_406 T . Too_low_VAF END=77718547;SVTYPE=DEL;SVLEN=-221037 TR:VR 117:3 55:0 chr1 120106567 d_23 T . PASS END=120106660;SVTYPE=DEL;SVLEN=-93 TR:VR 46:7 33:0 chr10 113309130 r_73_0 C C]chr14:29298642] . Too_low_VAF SVTYPE=BND;MATEID=r_73_1 TR:VR 103:5 63:0 chr14 29298642 r_73_1 T T]chr10:113309130] . Too_low_VAF SVTYPE=BND;MATEID=r_73_0 TR:VR 103:5 63:0 chr17 21854169 i_404 G . Too_low_VAF END=21854172;SVTYPE=INS;SVINSLEN=269;SVINSSEQ=GAATGGAGTCGAATGGAATTGAAAGGAATGGAATCTAATGGAATGGAGTCGAATGGAATAGAATTGAATGGAATGGAACGGAATGGAATGGACTCGAATGGAATGGATTTGAATGGAATAGAATCGAATGGAATGGTATCGAATGGAATGGAATGGAATGCAATGGAATGGAATGGACCCAAATGTAATGGACTCAAATGGAATGGACTCAAATAGAACGGAATTTAAAGGAATGTTCTCGAATGGAACTTATTCAAATAGAAAGGAAT TR:VR 188:8 138:0 chr18 6048677 r_175_0 T T[chr8:85134984[ . PASS SVTYPE=BND;MATEID=r_175_1 TR:VR 82:5 68:0 chr8 85134984 r_175_1 A ]chr18:6048677]A . PASS SVTYPE=BND;MATEID=r_175_0 TR:VR 82:5 68:0 chr2 124845543 r_280_0 T ]chr3:80759291]GCCT . PASS SVTYPE=BND;MATEID=r_280_1;SVINSLEN=3;SVINSSEQ=GCC TR:VR 113:14 55:0 chr3 80759291 r_280_1 T TGGC[chr2:124845543[ . PASS SVTYPE=BND;MATEID=r_280_0;SVINSLEN=3;SVINSSEQ=GGC TR:VR 113:14 55:0 chr2 71918272 r_258 G . PASS END=125346510;SVTYPE=DEL;SVLEN=-53428238 TR:VR 111:7 50:0 chr5 106901142 r_363_0 C C[chr8:128749816[ . Too_low_VAF SVTYPE=BND;MATEID=r_363_1 TR:VR 103:3 62:1 chr8 128749816 r_363_1 T ]chr5:106901142]T . Too_low_VAF SVTYPE=BND;MATEID=r_363_0 TR:VR 103:3 62:1 chr8 77740297 r_407 A . Too_low_VAF END=90349363;SVTYPE=DEL;SVLEN=-12609066 TR:VR 126:5 46:0 chr1 180830954 r_28_0 G [chr17:22537414[A . PASS SVTYPE=BND;MATEID=r_28_1 TR:VR 106:18 53:0 chr17 22537414 r_28_1 A [chr1:180830954[A . PASS SVTYPE=BND;MATEID=r_28_0 TR:VR 106:18 53:0 chr10 113309163 r_74_0 C [chr10:116758284[C . PASS SVTYPE=BND;MATEID=r_74_1 TR:VR 79:20 58:0 chr10 116758284 r_74_1 C [chr10:113309163[C . PASS SVTYPE=BND;MATEID=r_74_0 TR:VR 79:20 58:0 chr11 77691515 r_92_0 A [chr11:133757928[A . Too_low_VAF SVTYPE=BND;MATEID=r_92_1 TR:VR 180:3 54:0 chr11 133757928 r_92_1 A [chr11:77691515[A . Too_low_VAF SVTYPE=BND;MATEID=r_92_0 TR:VR 180:3 54:0 chr18 6049081 r_176_0 T T[chr8:85137333[ . PASS SVTYPE=BND;MATEID=r_176_1 TR:VR 78:8 70:0 chr8 85137333 r_176_1 T ]chr18:6049081]T . PASS SVTYPE=BND;MATEID=r_176_0 TR:VR 78:8 70:0 chr2 125354989 r_281_0 T T]chr3:2220610] . Too_low_VAF SVTYPE=BND;MATEID=r_281_1 TR:VR 126:6 59:0 chr3 2220610 r_281_1 T T]chr2:125354989] . Too_low_VAF SVTYPE=BND;MATEID=r_281_0 TR:VR 126:6 59:0 chr2 75844363 r_259_0 C ]chr8:78280999]T . PASS SVTYPE=BND;MATEID=r_259_1 TR:VR 115:12 36:0 chr8 78280999 r_259_1 T T[chr2:75844363[ . PASS SVTYPE=BND;MATEID=r_259_0 TR:VR 115:12 36:0 chr4 37245306 d_1086 G . PASS END=37246705;SVTYPE=DEL;SVLEN=-1399 TR:VR 22:3 36:0 chr8 77792859 r_408 C . Too_low_VAF END=81007389;SVTYPE=DUP;SVLEN=3214530;SVINSLEN=42;SVINSSEQ=TTCCCAAATATTTGAAATCTGTACCTATAACAGATCATATTT TR:VR 137:6 66:0 chrY 56840787 d_1590 A . Too_low_VAF END=56840942;SVTYPE=DEL;SVLEN=-155;SVINSLEN=19;SVINSSEQ=GATATCTCTGAACCTATCA TR:VR 152:5 151:0 chr1 181590146 r_29_0 C CG[chr17:16385652[ . PASS SVTYPE=BND;MATEID=r_29_1;SVINSLEN=1;SVINSSEQ=G TR:VR 75:9 60:0 chr17 16385652 r_29_1 T ]chr1:181590146]CT . PASS SVTYPE=BND;MATEID=r_29_0;SVINSLEN=1;SVINSSEQ=C TR:VR 75:9 60:0 chr10 113374370 r_75_0 C C[chr15:99258135[ . PASS SVTYPE=BND;MATEID=r_75_1 TR:VR 80:15 61:0 chr15 99258135 r_75_1 A ]chr10:113374370]A . PASS SVTYPE=BND;MATEID=r_75_0 TR:VR 80:15 61:0 chr18 6050907 d_652 T . PASS END=6054036;SVTYPE=DEL;SVLEN=-3129 TR:VR 29:8 34:0 chr2 125527942 r_282_0 T T]chr3:1718363] . PASS SVTYPE=BND;MATEID=r_282_1 TR:VR 160:8 54:0 chr3 1718363 r_282_1 A A]chr2:125527942] . PASS SVTYPE=BND;MATEID=r_282_0 TR:VR 160:8 54:0 chr2 75848412 r_260_0 A A[chr8:77085077[ . PASS SVTYPE=BND;MATEID=r_260_1 TR:VR 115:11 46:0 chr8 77085077 r_260_1 T ]chr2:75848412]T . PASS SVTYPE=BND;MATEID=r_260_0 TR:VR 115:11 46:0 chr2 90386593 i_583 C . Too_low_VAF END=90386593;SVTYPE=INS;SVINSLEN=239;SVINSSEQ=ACCAACGAATGGAACTCAACGGAATCATCATCGAATGGAATCGAATGGAATCATCAAATGAACTCGAATGCAATCATCATAGAATGGAATCGAATGGAATCATCGAATGGAATACAAATGGAATCATCATCGAATGGAAACGAATGGAATCATCATTGAATGGAATCAAATGGAATCATCAAATGGAATCGAATTGAATGCAATCATCGAATGGAATCGAAAGGAATCATCGAATGGAA TR:VR 653:3 406:0 chr8 78254416 r_409 T . PASS END=87683836;SVTYPE=DUP;SVLEN=9429420;SVINSLEN=16;SVINSSEQ=ATATTAATATATAGTA TR:VR 166:11 36:0 chr9 29729331 i_1222 G . PASS END=29729337;SVTYPE=INS;SVINSLEN=84;SVINSSEQ=GGGCCACATGTCTAATAAAGGTGACTGAATCCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA TR:VR 34:5 32:0 chr1 182120533 r_30 A . PASS END=188163261;SVTYPE=DEL;SVLEN=-6042728 TR:VR 134:16 60:0 chr11 79286716 r_93_0 T T]chr5:42049472] . PASS SVTYPE=BND;MATEID=r_93_1 TR:VR 191:80 58:0 chr5 42049472 r_93_1 A A]chr11:79286716] . PASS SVTYPE=BND;MATEID=r_93_0 TR:VR 191:80 58:0 chr17 21857608 d_618 G . Too_low_VAF END=21857662;SVTYPE=INS;SVINSLEN=74;SVINSSEQ=GACTCGAACAAAATGGAATAGAACGGATTGGAATCGAATGGAACAGAATGGAATGGAATGGAATGGAAAGAACC TR:VR 115:3 82:0 chr2 125558160 r_283_0 T T]chr3:2286094] . PASS SVTYPE=BND;MATEID=r_283_1 TR:VR 88:28 50:0 chr3 2286094 r_283_1 T T]chr2:125558160] . PASS SVTYPE=BND;MATEID=r_283_0 TR:VR 88:28 50:0 chr2 75849403 r_261_0 T ]chr8:90437844]TGGCT . PASS SVTYPE=BND;MATEID=r_261_1;SVINSLEN=4;SVINSSEQ=TGGC TR:VR 104:15 39:0 chr8 90437844 r_261_1 T TGCCA[chr2:75849403[ . PASS SVTYPE=BND;MATEID=r_261_0;SVINSLEN=4;SVINSSEQ=GCCA TR:VR 104:15 39:0 chr3 190403907 i_813 T . PASS END=190403907;SVTYPE=INS;SVINSLEN=396;SVINSSEQ=AAGAAAATGAAAAATTTTCTTATCAGCTTATGAAATTAAAATCCATTTTAATGAATTTTTAGAATAGACAAAATGTCCATTCCTATTCAACAAATAGTGTTTCTTTGTAGGTAGAACTAAACTTAAAGTATAATTAAAAAAAAAAAAAAAGAATCTTATATGTGTGTACTATGAGGCATGCACAAAGATGTTCAATGCAGCATTGTTTATAATAGCAAAAAAAAAAAAACCCTGGAAACAAAGCAAATGTTCATTAATAGGAAATCAATTGTATAAACTGTAATGTATTCATTCTATAAAATACTTTTTAAAATAATAAAGCTGATCTTTATGTTCTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA TR:VR 46:9 16:0 chr8 115193901 d_1389 G . PASS END=115193954;SVTYPE=DEL;SVLEN=-53 TR:VR 83:26 23:0 chr8 78494720 d_1381 C . PASS END=78495037;SVTYPE=DEL;SVLEN=-317 TR:VR 61:9 32:0 chr1 182126547 r_31_0 G ]chr17:45610469]G . PASS SVTYPE=BND;MATEID=r_31_1 TR:VR 101:6 56:0 chr17 45610469 r_31_1 G G[chr1:182126547[ . PASS SVTYPE=BND;MATEID=r_31_0 TR:VR 101:6 56:0 chr15 72806998 d_498 C . PASS END=72807018;SVTYPE=INS;SVINSLEN=68;SVINSSEQ=GGGGGGGCTAACCCCCCACCTCCTCTCAGACGGGGCGGCTGGCCGGGCAGAGGGGCTCCTCACTTCCC TR:VR 38:4 35:1 chr17 21866966 i_406 A . PASS END=21866976;SVTYPE=INS;SVINSLEN=253;SVINSSEQ=ATCAAATGACATCAAATGGAATTGAATGTAATGCAGTGGACTGGAGTGGAATGGAAAGCAGATGAATGGACTGTGGTGGAATGGAATTGAATGGAGTGGAGTGGAGTGGACTGGAGTGGAATAGAATGCAATAGAAAAGAAAGGAATGGATTGAGTGAAATGAAATGTGAGCTGAGATTGTGCACTTCAATCCAGCCTGGGTGTCAGAGTGAGATCCTGTCGAAAGAAAGGAAGGAATGGAATGGATTTACAA TR:VR 77:8 70:1 chr2 126160166 d_842 A . PASS END=126160228;SVTYPE=DEL;SVLEN=-62 TR:VR 38:7 26:0 chr5 80432373 r_362_0 G G[chr6:32586188[ . PASS SVTYPE=BND;MATEID=r_362_1 TR:VR 100:5 59:0 chr6 32586188 r_362_1 C ]chr5:80432373]C . PASS SVTYPE=BND;MATEID=r_362_0 TR:VR 100:5 59:0 chr8 116436795 d_1390 A . PASS END=116437287;SVTYPE=DEL;SVLEN=-492 TR:VR 73:11 24:0 chr8 78655015 r_410_0 G G]chr8:82132520] . PASS SVTYPE=BND;MATEID=r_410_1 TR:VR 140:9 50:0 chr8 82132520 r_410_1 T T]chr8:78655015] . PASS SVTYPE=BND;MATEID=r_410_0 TR:VR 140:9 50:0 chr2 142050579 r_284 G . PASS END=142066828;SVTYPE=DEL;SVLEN=-16249 TR:VR 40:6 48:0 chr2 76013315 r_262_0 A AGA[chr8:88926377[ . PASS SVTYPE=BND;MATEID=r_262_1;SVINSLEN=2;SVINSSEQ=GA TR:VR 133:10 59:0 chr8 88926377 r_262_1 T ]chr2:76013315]TCT . PASS SVTYPE=BND;MATEID=r_262_0;SVINSLEN=2;SVINSSEQ=TC TR:VR 133:10 59:0 chr20 31059978 d_901 A . Too_low_VAF END=31060121;SVTYPE=DEL;SVLEN=-143;SVINSLEN=92;SVINSSEQ=TGGAATGGAATGGAATGGAATAAAAGCGGAATGGAATGGAATGGAATCAGAATGGAATGGAATGGAATGGAATGGAATGGAATGGACTATCA TR:VR 770:3 589:1 chr5 108930300 i_960 C . PASS END=108930328;SVTYPE=INS;SVINSLEN=347;SVINSSEQ=TTTTCGCTCCCCTCCTTTGGCCTCCCCCCTTTTTCTCCTCCCCTCCCTTCCCTCCCCTCCTCCCCTCTTCTCCCCTCACCTCTTCTCCCCTTCTTTTTTCCCCTCCCCCTCTCCCTCTCCCTCTCCTTCTGCCTCTCCCTCCCCTCCCCTCTGCCTCTCCTCCCCTCCCCTTTCTCTCCTCTCCCTCCCTCCTCTTCTCCCTCTCCCCCCTCCCCCTCCCCTCCCCTCTCCTTTCCTCCCTCTCCCCTTTTCCTCCCCTTCCCCTCCCCTCTCTCTTTCTCCCTTCTCTTCCCCTCTCCCTCTCCTCCCCTCCCTTCCCCTTCTCCTCTCCCCTCCCTTTCCTCCCC TR:VR 47:3 26:0 chr8 78693835 r_411_0 A A]chr8:85139158] . PASS SVTYPE=BND;MATEID=r_411_1 TR:VR 117:7 69:0 chr8 85139158 r_411_1 A A]chr8:78693835] . PASS SVTYPE=BND;MATEID=r_411_0 TR:VR 117:7 69:0 chr1 182856551 r_32_0 A A]chr2:31431418] . PASS SVTYPE=BND;MATEID=r_32_1 TR:VR 83:10 65:0 chr2 31431418 r_32_1 G G]chr1:182856551] . PASS SVTYPE=BND;MATEID=r_32_0 TR:VR 83:10 65:0 chr10 119057207 r_77_0 T [chrX:146426086[T . PASS SVTYPE=BND;MATEID=r_77_1 TR:VR 71:8 60:0 chrX 146426086 r_77_1 T [chr10:119057207[T . PASS SVTYPE=BND;MATEID=r_77_0 TR:VR 71:8 60:0 chr15 81014014 r_137 A . PASS END=81029928;SVTYPE=DEL;SVLEN=-15914 TR:VR 57:6 39:0 chr16 46384129 r_141_0 A [chr17:40315312[AATTGAATGGAATCATCAATTGGACTCGAATGGAATCATCAAATGGAATCGATTGGAAGTGTCGAC . Too_low_VAF SVTYPE=BND;MATEID=r_141_1;SVINSLEN=65;SVINSSEQ=AATTGAATGGAATCATCAATTGGACTCGAATGGAATCATCAAATGGAATCGATTGGAAGTGTCGA TR:VR 563:3 525:0 chr17 40315312 r_141_1 C [chr16:46384129[TCGACACTTCCAATCGATTCCATTTGATGATTCCATTCGAGTCCAATTGATGATTCCATTCAATTC . Too_low_VAF SVTYPE=BND;MATEID=r_141_0;SVINSLEN=65;SVINSSEQ=TCGACACTTCCAATCGATTCCATTTGATGATTCCATTCGAGTCCAATTGATGATTCCATTCAATT TR:VR 563:3 525:0 chr18 71475155 i_471 T . PASS END=71475155;SVTYPE=INS;SVINSLEN=191;SVINSSEQ=TATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAGATATTAAAGTCTTTATTTGCCCCCCCCCCATTTTTATTTTCAGTAATACAGGGTAAAATGAGTAGGATTACTTGATCTGGCCATCTATGGCCATTTTATGGAATGACAAACTAAGTTCAATACTGATAGAGTTGTATTCTGTGTAT TR:VR 34:5 30:0 chr2 27275109 r_208 G . PASS END=54356995;SVTYPE=DUP;SVLEN=27081886 TR:VR 73:4 45:0 chr2 76216425 r_263_0 C ]chr8:90077393]T . PASS SVTYPE=BND;MATEID=r_263_1 TR:VR 133:9 51:0 chr8 90077393 r_263_1 T T[chr2:76216425[ . PASS SVTYPE=BND;MATEID=r_263_0 TR:VR 133:9 51:0 chr5 110128438 d_1256 T . PASS END=110128486;SVTYPE=DEL;SVLEN=-48 TR:VR 38:17 33:0 chr6 35801035 d_1281 C . PASS END=35801123;SVTYPE=DEL;SVLEN=-88;SVINSLEN=3;SVINSSEQ=AGC TR:VR 41:3 27:0 chr8 144218849 i_1214 T . PASS END=144218874;SVTYPE=INS;SVINSLEN=161;SVINSSEQ=CCCCTCCCCCTCCCCTCCTCCCCTCCCCTCCCCTCCCCTCCTCCCCTCCCCTCTCCCCTCCTCCCCTCCTCCTCCCCCCCCTCCCCTCCTCCCTCTCCCTCCCCCCTCCCCTCCTCCTCCTCCCCCCTCCTCCCCTCCCCTCCTCCCCTCCTCCTCCTCCC TR:VR 77:5 25:0 chr8 78852693 r_412 A . Too_low_VAF END=85647001;SVTYPE=DUP;SVLEN=6794308 TR:VR 269:8 108:0 chr9 42522117 d_1423 A . PASS END=42522259;SVTYPE=DEL;SVLEN=-142 TR:VR 30:12 22:0 chr1 183781933 i_47 T . PASS END=183781933;SVTYPE=INS;SVINSLEN=108;SVINSSEQ=ATTTCTGGGCACTTATTTGGGTGTAAGAAGAGTTGAAAATCATTTTGCAGCAATAAAATAACACATTTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA TR:VR 82:6 22:0 chr10 119196087 r_78_0 A A]chr15:99260259] . PASS SVTYPE=BND;MATEID=r_78_1 TR:VR 79:16 62:0 chr15 99260259 r_78_1 T T]chr10:119196087] . PASS SVTYPE=BND;MATEID=r_78_0 TR:VR 79:16 62:0 chr17 22523208 r_152_0 T T]chr17:22541998] . PASS SVTYPE=BND;MATEID=r_152_1 TR:VR 69:16 56:0 chr17 22541998 r_152_1 T T]chr17:22523208] . PASS SVTYPE=BND;MATEID=r_152_0 TR:VR 69:16 56:0 chr2 143126273 r_285_0 T ]chr8:99385859]T . PASS SVTYPE=BND;MATEID=r_285_1 TR:VR 120:8 64:0 chr8 99385859 r_285_1 T T[chr2:143126273[ . PASS SVTYPE=BND;MATEID=r_285_0 TR:VR 120:8 64:0 chr2 27340148 r_209 C . PASS END=54348136;SVTYPE=DEL;SVLEN=-27007988 TR:VR 103:11 70:0 chr2 77005541 r_264_0 T [chr8:80365289[CAT . Too_low_VAF SVTYPE=BND;MATEID=r_264_1;SVINSLEN=2;SVINSSEQ=CA TR:VR 130:4 55:0 chr8 80365289 r_264_1 T [chr2:77005541[TGT . Too_low_VAF SVTYPE=BND;MATEID=r_264_0;SVINSLEN=2;SVINSSEQ=TG TR:VR 130:4 55:0 chr2 9239454 d_714 G . Too_small_size END=9239494;SVTYPE=DEL;SVLEN=-40 TR:VR 45:13 24:0 chr8 78977553 r_413 T . Too_low_VAF END=88368127;SVTYPE=DEL;SVLEN=-9390574;SVINSLEN=10;SVINSSEQ=ATTTGTATAT TR:VR 161:3 66:0 chr1 185631681 r_33_0 A ]chr2:31430783]G . PASS SVTYPE=BND;MATEID=r_33_1 TR:VR 95:12 63:0 chr2 31430783 r_33_1 G G[chr1:185631681[ . PASS SVTYPE=BND;MATEID=r_33_0 TR:VR 95:12 63:0 chr11 93168391 d_261 G . PASS END=93168913;SVTYPE=DEL;SVLEN=-522 TR:VR 31:6 20:0 chr19 41362640 d_690 C . PASS END=41362724;SVTYPE=DEL;SVLEN=-84 TR:VR 41:10 20:0 chr2 1526366 d_711 G . PASS END=1526978;SVTYPE=DEL;SVLEN=-612;SVINSLEN=104;SVINSSEQ=CGCATCCCTCCAATCCCCTCCACTCTGTGCAACCTCCCCAAATTCCCCCAACTGTGTGCAACCTCCTCAAATCCCTCCCACTCTGTGCAAACTCCCCAAATCCA TR:VR 26:6 22:0 chr2 27350208 r_210_0 A [chr21:26825210[A . PASS SVTYPE=BND;MATEID=r_210_1 TR:VR 78:12 50:0 chr21 26825210 r_210_1 A [chr2:27350208[A . PASS SVTYPE=BND;MATEID=r_210_0 TR:VR 78:12 50:0 chr2 77035402 r_265_0 T [chr2:77036871[T . PASS SVTYPE=BND;MATEID=r_265_1 TR:VR 95:15 29:0 chr2 77036871 r_265_1 T [chr2:77035402[T . PASS SVTYPE=BND;MATEID=r_265_0 TR:VR 95:15 29:0 chr5 2018948 i_912 C . PASS END=2018949;SVTYPE=INS;SVINSLEN=92;SVINSSEQ=GTTACAGGATGCTGGATTCACTGGATGGGAGAACCCCACAGCTGCGTTACAGGATGCTGGATTCACTGGGTGGGAGAATTCCACAGCTGCGT TR:VR 54:8 19:0 chr5 88294761 d_1250 T . PASS END=88296903;SVTYPE=DEL;SVLEN=-2142 TR:VR 30:4 24:0 chr7 25156971 r_371 G . Too_low_VAF END=29577181;SVTYPE=DEL;SVLEN=-4420210 TR:VR 85:3 58:0 chr8 79044602 r_414 A . Too_low_VAF END=86389487;SVTYPE=DUP;SVLEN=7344885;SVINSLEN=15;SVINSSEQ=TATAACTTATTTTCT TR:VR 146:5 53:0 chr1 185911739 r_34_0 G G[chr17:44939006[ . PASS SVTYPE=BND;MATEID=r_34_1 TR:VR 113:12 57:0 chr17 44939006 r_34_1 T ]chr1:185911739]T . PASS SVTYPE=BND;MATEID=r_34_0 TR:VR 113:12 57:0 chr15 89637056 d_502 G . PASS END=89637110;SVTYPE=DEL;SVLEN=-54 TR:VR 31:8 17:0 chr2 27367535 r_211_0 C C[chr7:76047525[ . PASS SVTYPE=BND;MATEID=r_211_1 TR:VR 64:4 58:0 chr7 76047525 r_211_1 A ]chr2:27367535]A . PASS SVTYPE=BND;MATEID=r_211_0 TR:VR 64:4 58:0 chr2 77288599 r_266_0 A [chr8:90115335[TTAAAACTGTGGGTGTCACATCTTATCACC . Too_low_VAF SVTYPE=BND;MATEID=r_266_1;SVINSLEN=29;SVINSSEQ=TTAAAACTGTGGGTGTCACATCTTATCAC TR:VR 155:6 59:0 chr8 90115335 r_266_1 C [chr2:77288599[GTGATAAGATGTGACACCCACAGTTTTAAC . Too_low_VAF SVTYPE=BND;MATEID=r_266_0;SVINSLEN=29;SVINSSEQ=GTGATAAGATGTGACACCCACAGTTTTAA TR:VR 155:6 59:0 chr3 95615707 d_1030 A . PASS END=95617467;SVTYPE=DEL;SVLEN=-1760 TR:VR 43:6 19:0 chr5 11231 i_873 T . PASS END=11231;SVTYPE=INS;SVINSLEN=430;SVINSSEQ=AACCTCAACCCCAACCCCAACCCCAACCCCAACCCCCAACCCCCAACCCCAACCCTAACCCTAACCCTAACCCTAACCCAACCCCAACCCTAACCCTAACCCCAACCCTAACCCTAACCTGGCTAACCCCAACCTCAACTGGCCTAACCCCTAACCCCCAGCCCCAGCCTCAGCCCTAGCCCCCAGCCCCAGCCCCAGCCCTCAACCCAACCCTAACCTCAACCCCAACCCCAACCCCAACCCCCAACCCCAACCCCAACCCCAACCCTAACCCTAACCCCTAACCCTAACCCTAACCCTAACCCTAACCCTAACCCTAACCCTACCCTAACCCTAACCCCAACCCCAACCCCAACCCCAACCCCAACCCTAACCCCTAACCCCTAACCCCTACCCCAACCCCAACCCCAACCTCCCAACCCCAACCCCA TR:VR 93:10 47:1 chr8 144624609 d_1415 G . Too_low_VAF END=144625006;SVTYPE=DEL;SVLEN=-397;SVINSLEN=41;SVINSSEQ=GCGGCCCCGTTCACGGAGCACCCACTGCACACTGCGGCAGC TR:VR 64:3 36:1 chr8 80058174 r_415 A . Too_low_VAF END=88237720;SVTYPE=DEL;SVLEN=-8179546 TR:VR 161:5 55:0 chr9 63823768 i_1225 C . Too_low_VAF END=63823768;SVTYPE=INS;SVINSLEN=729;SVINSSEQ=ACAGACACCACACACACTGCACACACCACACCATGTTCACACACACACACACACCACACACTGCACACACACTGCACAGACACCACACATGCACACACCACCATGTGCACCAGCACACACACAGACACCACAGACACTGCACACTGCACACACCATGTATACATGCACACACCACACACACACACCATGTGCACATGCACACACACCCCAGACACCACACACACAGAGACACCACACTGCACCCACACCATGTATACATGCACACACACCCACACACTGTACACACACCATGTGCACACTGTGTACACACCCCAACACACAGACACAGACACACACACCACACAGTATGTGCACATGTGCACACACCCCCACACCACACACATGAATCTACTACACATACATCACACACATACAGCACCACACGCCACATACACATCACACACCCCTACATACTCCCCACACACACACACACAACCCACACATACTCCCCACACACTGCACACATACATACAACACCAGCACACATAGAGCAAACACATACCTCACATACATACACCACACCACACACATTCTAGCAATATACATCAAGCACACATCAAACACTACACACACCACACACACACAGCACCATGCACACACCTCACATACACCACACATATATCACATACACACACGATACACAGTACACACACACAGCAATACACACAGGCACGCGCACACACACACGTA TR:VR 348:5 328:1 chr1 186303177 r_35_0 C [chr1:196691780[C . PASS SVTYPE=BND;MATEID=r_35_1 TR:VR 127:9 58:0 chr1 196691780 r_35_1 C [chr1:186303177[C . PASS SVTYPE=BND;MATEID=r_35_0 TR:VR 127:9 58:0 chr10 68643869 d_230 T . PASS END=68643923;SVTYPE=DEL;SVLEN=-54 TR:VR 55:12 40:0 chr2 27371295 r_212_0 C ]chr21:39882950]T . PASS SVTYPE=BND;MATEID=r_212_1 TR:VR 78:9 48:0 chr21 39882950 r_212_1 T T[chr2:27371295[ . PASS SVTYPE=BND;MATEID=r_212_0 TR:VR 78:9 48:0 chr2 81007048 d_721 A . PASS END=81007184;SVTYPE=DEL;SVLEN=-136 TR:VR 28:7 19:0 chr3 98384930 d_1031 A . PASS END=98388268;SVTYPE=DEL;SVLEN=-3338 TR:VR 62:7 37:0 chr5 46801124 i_941 T . Too_low_VAF END=46801124;SVTYPE=INS;SVINSLEN=531;SVINSSEQ=TTTGTGATGTGTGCATTCAACTCACAGACTTGAACCTTCCTTTTGAGAGAGCAGTTATGAAACTGTCTTTTTGTAGTATCTGCAAGAGGATATTTGGAGCGATTTGAGGCCTAAGACGGAAAAGGAAATATCTTCACATACAAAATAGACAGAATCATTCTCAGGAACTTCAATGAGATGTGTGCATTCAACTAACAGAGTTGAAACTGTCTTTTGATAGAGCAGTACTGAAACACGCCTTTTTGTACTATCTGCTTGTGGATATTTGGAACAATTTGAGGAATTCGTTGGAAACGGGTATCTTCACATAAAAAGTAGACCTAAGAATTCTCAGAAATTTCTTTGTGAGGTCTGCATACAACTCACAGACTGGAACTTTCTTTTGATAGAGCAGTGTTGAAAGACACTTTATGTACAATCTGCAAGTGTTCATTTTAGAGCGCTTTGTTGCCAATGGTAAAAAAGAAATACCTTCACATAAAAACTAGACAGAAGCAATCTCAGAAACTCCTTTGTGATTTGTGCGTTCAA TR:VR 103:3 51:0 chr6 44746636 d_1282 C . PASS END=44747002;SVTYPE=DEL;SVLEN=-366 TR:VR 41:4 30:0 chr7 26717454 d_1328 G . PASS END=26717667;SVTYPE=DEL;SVLEN=-213 TR:VR 33:7 31:0 chr8 80358044 r_416_0 T [chr8:82864097[T . Too_low_VAF SVTYPE=BND;MATEID=r_416_1 TR:VR 124:3 40:0 chr8 82864097 r_416_1 T [chr8:80358044[T . Too_low_VAF SVTYPE=BND;MATEID=r_416_0 TR:VR 124:3 40:0 chrX 146423068 r_444_0 T T]chrX:146430282] . PASS SVTYPE=BND;MATEID=r_444_1 TR:VR 64:8 33:0 chrX 146430282 r_444_1 T T]chrX:146423068] . PASS SVTYPE=BND;MATEID=r_444_0 TR:VR 64:8 33:0 chr1 186395173 r_36_0 C C]chr1:190152412] . PASS SVTYPE=BND;MATEID=r_36_1 TR:VR 118:15 61:0 chr1 190152412 r_36_1 G G]chr1:186395173] . PASS SVTYPE=BND;MATEID=r_36_0 TR:VR 118:15 61:0 chr2 27418914 r_213_0 T T[chr21:35524748[ . PASS SVTYPE=BND;MATEID=r_213_1 TR:VR 139:11 58:0 chr21 35524748 r_213_1 C ]chr2:27418914]C . PASS SVTYPE=BND;MATEID=r_213_0 TR:VR 139:11 58:0 chr2 81369553 r_267_0 A [chr8:99385974[T . PASS SVTYPE=BND;MATEID=r_267_1 TR:VR 134:13 66:0 chr8 99385974 r_267_1 T [chr2:81369553[T . PASS SVTYPE=BND;MATEID=r_267_0 TR:VR 134:13 66:0 chr2 94666900 r_270 A . PASS END=105347321;SVTYPE=DEL;SVLEN=-10680421 TR:VR 71:7 52:0 chr7 28336810 i_1108 A . PASS END=28336825;SVTYPE=INS;SVINSLEN=501;SVINSSEQ=TTGGTGTAGGCACTTGAAGAGAGCCGGCAAAGGGATCATGACCAACTCAACATTCCAATGGAGGGTATATGATCAAACAGCAAACTGTTTATCATGAATGCAGGATGTGGGCAAACTTATGACTGCGCCTGCCACCAGAAGGTTTGCTGAAGGCAATCACTCCCTGGTGCCGTGCTCGTTGAGGTTATCTACTGGGACGTCTATAGCCTATTGTTTGAAGAATGCAATCTTGCAAGCCTGCTGTAAATCAAACTGCCGACTGATAGTCACCCAACGATCACCTCCTCTTCTTGCTATCTCTTTTACCGAATAAATATGGAGGACTGAAGAAGCTTAGGGCCCTTGTTAACTTGAAGCAAGGAGTCCCCTGACCCTTCTTCCAAATATACTCTTTTGTCTTTGTCTTTATTCCCATGTTTGTCATCCTTTGTTCAGTCCCCCAAGGTCCGTGCAGGTGGCAAAGTGGTGCCCAAACAGGGACTTGAGGACATCGGCAGGCAC TR:VR 45:5 36:1 chr8 121850299 d_1392 G . Too_low_VAF END=121850417;SVTYPE=DEL;SVLEN=-118 TR:VR 97:3 22:0 chr8 80385612 r_417_0 G G]chr8:81180809] . Too_low_VAF SVTYPE=BND;MATEID=r_417_1 TR:VR 138:3 56:0 chr8 81180809 r_417_1 C C]chr8:80385612] . Too_low_VAF SVTYPE=BND;MATEID=r_417_0 TR:VR 138:3 56:0 chr10 121004079 r_79_0 T ]chr14_KI270726v1_random:33000]TCAG . PASS SVTYPE=BND;MATEID=r_79_1;SVINSLEN=3;SVINSSEQ=TCA TR:VR 73:4 42:0 chr14_KI270726v1_random 33000 r_79_1 G GTGA[chr10:121004079[ . PASS SVTYPE=BND;MATEID=r_79_0;SVINSLEN=3;SVINSSEQ=TGA TR:VR 73:4 42:0 chr14_GL000225v1_random 69658 d_425 G . Too_low_VAF END=70117;SVTYPE=DEL;SVLEN=-459;SVINSLEN=46;SVINSSEQ=GACTCTTGTCTTGGATCTGCCTATGGGGTCATAGTGACATATCTCT TR:VR 675:4 768:0 chr2 29614706 r_214_0 C C]chr2:68367647] . Too_low_VAF SVTYPE=BND;MATEID=r_214_1 TR:VR 78:3 50:0 chr2 68367647 r_214_1 T T]chr2:29614706] . Too_low_VAF SVTYPE=BND;MATEID=r_214_0 TR:VR 78:3 50:0 chr2 99904732 r_271 T . PASS END=100228084;SVTYPE=DEL;SVLEN=-323352 TR:VR 75:5 50:0 chr3 993640 r_333_0 T [chr3:1001766[T . PASS SVTYPE=BND;MATEID=r_333_1 TR:VR 98:11 39:0 chr3 1001766 r_333_1 T [chr3:993640[T . PASS SVTYPE=BND;MATEID=r_333_0 TR:VR 98:11 39:0 chr5 24606142 d_1187 A . PASS END=24607573;SVTYPE=DEL;SVLEN=-1431 TR:VR 69:7 32:0 chr7 28995235 i_1109 T . PASS END=28995240;SVTYPE=INS;SVINSLEN=499;SVINSSEQ=CAGTTCTCAGATGTGTAATCTGGCTTTGGAAACCTCCATAAGCATCAGTTCCTTTCTCCTTTCTTTAAAGTAGAAGACTCCATTGTTGCCACCTGGTTTAGCAATGAAGGCTTGAGGTCCCTGAGAAGGCTTCAGTTTGTGAAAAGAAGAACTAGGGGATAGAGTGAATGTGAGAAGATCTATGTTGCCGAGGGAGATACACGTTATGAAAGAATAGATGAAGAATGATATATGAACTTGAGAGAATTGGCACACTTGTGTTGGTTTCACCATGTGTGGTGATAGAATCAACTAACTTGAAGTCCGAGTCGCTAACTTGGTAGACTTGATTTATATGTGAGATTATTCAAATGGTGCCATTCTACAGGACTGATTGTGGGAAACTGAACTAAAAGGCAAGAGGGAGGAATGCATAGTTGGTAGCCTATAAATAAAGGAACAAGAAGGGGCTGGAATTAGCTTACAGCTTGTTTACAACCTCCCTTGGAAGGATGTGGCA TR:VR 32:13 25:0 chr8 80412804 r_418 A . Too_low_VAF END=84327957;SVTYPE=DUP;SVLEN=3915153 TR:VR 130:3 56:0 chrUn_KI270442v1 355063 i_1272 G . PASS END=355063;SVTYPE=INS;SVINSLEN=658;SVINSSEQ=AAGCATTTCTGAGAGATTTCTTTGAGATGTGTGCATTCATCACACAGAGTGGAACCTTTCTTTCGATTGAACAGTTTGGAAACACTCTTTTTTTTTTTTACAATGGTAAATTGAGAAAGTTTGACATTCATGTAATGGACATAACAGTAATGGATGATATGAGGAGGAGGAAAAAGGAAGTAGATATACAGAAAACAAAGAGTAGTGAATAGTGTGGAATTTAGGGTCCACCATCTGCACTGTAATTACTTTATTTTATATTTTATTTTTTTTAATTATACTCTAAGTTTTAGGGTACATGTGCACATTGTGCAGGTTAGTTACATAAGTATACATGTGCCATGCTGGTGTGCTGCACCCACTAACGTGTCATCTAGCATTAGGTATATCTCCTAATGCCTATCCCTCCTCCCTCCCCCGACCCCACCACAGTCCCCAGAGTGTGATATTCCCGTGTCCATGTGTCCATGTGATCTCATTGTTCAATTCCCACCTATGAGTGAGAATATGCGGTGTTTGGTTTTTTGTTCCTTGCGATAGTTTGACTGAGAATGATGTTTTGAAACACTCTTTTTATAGAATCTGAAAGTGGACATTTGGAAGGCCTTGAGGCCTATGGTGGAAAAGGAAATATCTTCATATAGAAAACTAGGCAGAA TR:VR 56:7 37:1 chr19 48761419 i_516 C . Too_small_size END=48761419;SVTYPE=INS;SVINSLEN=45;SVINSSEQ=CAGAGAGAGAGGGGGACAGAGACCCAGAGAGAGAGGGACAGGAAC TR:VR 48:6 20:0 chr2 160292749 d_847 T . Too_small_size END=160292787;SVTYPE=DEL;SVLEN=-38 TR:VR 40:6 41:0 chr20 11243858 r_296_0 A A]chr20:15550331] . Too_low_VAF SVTYPE=BND;MATEID=r_296_1 TR:VR 134:4 50:0 chr20 15550331 r_296_1 T T]chr20:11243858] . Too_low_VAF SVTYPE=BND;MATEID=r_296_0 TR:VR 134:4 50:0 chr4 108045178 d_1125 C . PASS END=108045228;SVTYPE=DEL;SVLEN=-50 TR:VR 33:6 30:0 chr5 11530 i_876 C . Too_low_VAF END=11530;SVTYPE=INS;SVINSLEN=456;SVINSSEQ=CAACCCCAACCCCAACCCCAACCTCAACCCCAACCCCCAACCCCCAACCTCAACTCCCTACCCCAACCTCAACCTCAACCTCAACCCCAACCTCAACCTCAACCCCAACTCCTTAACCCCAACCCCAACTCCTAACCCTAACCCTAACCCCCGAACCCTCAACCCTAACCCCAACTCCAACCCTAACCCCAACCCCCCTCAACCCCAACTCCCTGACCTCGACCTCGACCCCCGACCCCGACCCCGACCCCCGACCCCAACTCCTAAGCTTCAACCCCAACCCTAACCTTCCCCAACCCCCAACCTCAACCCCAACCCCAACCCCAATCCCCCCAACCCTAACCCTAAAACCCTAAACCCTAACCCCAACCCTTAACCCTAACCCCTAACCCCAACCCCCAACCCCAACCCTATCCCCTAACCCCAACCCCAACCCCAACCCCAACCCCAACCCTT TR:VR 106:3 52:1 chr5 24607574 r_357_0 A A[chr8:140826385[ . Too_low_VAF SVTYPE=BND;MATEID=r_357_1 TR:VR 140:3 57:0 chr8 140826385 r_357_1 A ]chr5:24607574]A . Too_low_VAF SVTYPE=BND;MATEID=r_357_0 TR:VR 140:3 57:0 chrX 92071319 d_1533 C . PASS END=92071675;SVTYPE=DEL;SVLEN=-356 TR:VR 37:7 22:0 chr14_GL000225v1_random 69703 d_427 C . Too_low_VAF END=69916;SVTYPE=INS;SVINSLEN=213;SVINSSEQ=TCTGCCCTGATCACCTGGGTCATGTAACTCTTGTCTCGGCTTTGCCTACTGGAAGCGTTGTGACATATCTCCTTGCTGATCAGCCAGGTGATGTCACTTTTGTCTAAGGATATGGCTACAGGGACATTTTGACATGTCACTACACTGATCACACAGCTGATGTATCACTTGTCTGGGCTCTGTCTACAGGGTGCTTTGACACATCTCTGCACT TR:VR 678:3 755:1 chr2 160375172 r_287 C . PASS END=160380377;SVTYPE=DEL;SVLEN=-5205 TR:VR 65:12 30:0 chr20 11243882 r_297 T . Too_low_VAF END=15570082;SVTYPE=DUP;SVLEN=4326200 TR:VR 135:6 53:0 chr21 8421357 r_307_0 T [chr21:33652201[G . Too_low_VAF SVTYPE=BND;MATEID=r_307_1 TR:VR 546:3 517:0 chr21 33652201 r_307_1 G [chr21:8421357[G . Too_low_VAF SVTYPE=BND;MATEID=r_307_0 TR:VR 546:3 517:0 chr5 47052785 i_942 T . PASS END=47052785;SVTYPE=INS;SVINSLEN=172;SVINSSEQ=TTTGATGTGGTCATTCAACTCACAGATTTGAGTATTCCTTTTGAGAGAGCAGTTTTGAAACAGTCTTTTTGTAGTATCTGCAAGTGGATAGTTTTAGCGATGTGAGGCCTAAGATGGAAAAGGAAATATCTACACATACAAACTAAACAGAAGCATTCTCAGAAACTCCTCT TR:VR 30:8 7:0 chr5 97553475 i_958 A . PASS END=97553475;SVTYPE=INS;SVINSLEN=71;SVINSSEQ=TTTTTTTTTTTTTTTTTTTTTTTTTTTTGTTTTGTTGTTTTTTTTTTTTTTTTTATGTGTTTTTTTTTTTT TR:VR 27:7 33:0 chr8 18172227 r_394 A . PASS END=18437090;SVTYPE=DUP;SVLEN=264863 TR:VR 58:6 59:0 chr8 81083186 r_419_0 T [chr8:81739781[C . Too_low_VAF SVTYPE=BND;MATEID=r_419_1 TR:VR 122:3 46:0 chr8 81739781 r_419_1 C [chr8:81083186[C . Too_low_VAF SVTYPE=BND;MATEID=r_419_0 TR:VR 122:3 46:0 chrX 95140180 i_1328 A . PASS END=95140181;SVTYPE=INS;SVINSLEN=63;SVINSSEQ=ATAAATCTGTATGGTATACATATAGATATATAACATCTATGGTATACTATATAGTATATAACA TR:VR 42:3 27:0 chr1 188202704 r_37_0 A A[chr2:31430126[ . PASS SVTYPE=BND;MATEID=r_37_1 TR:VR 94:11 68:0 chr2 31430126 r_37_1 A ]chr1:188202704]A . PASS SVTYPE=BND;MATEID=r_37_0 TR:VR 94:11 68:0 chr10 74955620 r_59_0 C [chr10:75204538[A . PASS SVTYPE=BND;MATEID=r_59_1 TR:VR 98:9 41:0 chr10 75204538 r_59_1 A [chr10:74955620[A . PASS SVTYPE=BND;MATEID=r_59_0 TR:VR 98:9 41:0 chr16 90003566 i_363 C . PASS END=90003566;SVTYPE=INS;SVINSLEN=269;SVINSSEQ=CCCGGCCCGGGCCACCTTACGTGCACGTGGGGCGGGACTTCTATGACTCCTCCCCCGGCCCGGGCCACCTTTACGTGCACGTGGGGCGGGACTTCAGGACTCTCTCCTGGCCCGGGCTACCTTTACATGCACGTGCGGTGGGACTTTCAGTGACTCCCTCCCCCGGCCCGGGCTACTCTACATGCACGTGCGGTGGACCCCTGTGACTCCCCTCCCCCGGCCCGGGCCACCCTTACGCGCACGTGGGGCGGGACTTCTGTGACTCCCTC TR:VR 26:3 23:0 chr7 43592059 r_372 T . PASS END=101110289;SVTYPE=DEL;SVLEN=-57518230 TR:VR 78:10 55:0 chr8 81113397 r_420 T . Too_low_VAF END=82074670;SVTYPE=DEL;SVLEN=-961273 TR:VR 161:3 59:0 chr10 129558556 r_80_0 C [chr14:56427165[T . PASS SVTYPE=BND;MATEID=r_80_1 TR:VR 89:15 63:0 chr14 56427165 r_80_1 T [chr10:129558556[T . PASS SVTYPE=BND;MATEID=r_80_0 TR:VR 89:15 63:0 chr21 9248195 i_732 T . PASS END=9248195;SVTYPE=INS;SVINSLEN=286;SVINSSEQ=GGAGTGGAATGGAATGGAATGGAATGGATTGGAATTGGAATGGAATGGAATGGAGAGGAGAGGAATGGAGTGGAATGGAGTGTAATTGGAAAGGATGGAATGGAATGGAATGCCATGGAATAGAATTAGGAATAGAATGGAATGATGTGGAATGGAATGGAGTAGAATTCAGTGGAGTGGAGTGGAGTGGAGTGGAATGTAATATAATGGAATGGGATGGGATGGAGTGGAATGGAATGGAGTGGAGTGGAGTGGAGTGGAATGGAGTGGAATGGAATGGGATGGG TR:VR 50:6 48:1 chr4 124435213 i_851 C . PASS END=124435213;SVTYPE=INS;SVINSLEN=168;SVINSSEQ=AAAACCGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAGAGTATAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA TR:VR 34:4 19:0 chr8 81331930 r_421 C . Too_low_VAF END=81497987;SVTYPE=DUP;SVLEN=166057 TR:VR 150:4 69:0 chr1 189431096 r_39 T . PASS END=196084992;SVTYPE=DUP;SVLEN=6653896 TR:VR 109:16 57:0 chr10 129564176 r_81_0 C C]chrX:135022717] . PASS SVTYPE=BND;MATEID=r_81_1 TR:VR 81:14 62:0 chrX 135022717 r_81_1 C C]chr10:129564176] . PASS SVTYPE=BND;MATEID=r_81_0 TR:VR 81:14 62:0 chr2 90399000 d_796 A . Too_low_VAF END=90399012;SVTYPE=INS;SVINSLEN=61;SVINSSEQ=TGGATTCGAACAGAATCTTTCAATGAAATTGAATGGAATCAGCATGAAATGGAATCTAAAG TR:VR 632:3 377:1 chr7 49652987 d_1331 A . PASS END=49653090;SVTYPE=DEL;SVLEN=-103 TR:VR 41:3 35:0 chr8 81332098 r_422_0 G G]chr8:81740092] . Too_low_VAF SVTYPE=BND;MATEID=r_422_1 TR:VR 124:3 46:0 chr8 81740092 r_422_1 G G]chr8:81332098] . Too_low_VAF SVTYPE=BND;MATEID=r_422_0 TR:VR 124:3 46:0 chrX 98376087 i_1330 A . PASS END=98376089;SVTYPE=INS;SVINSLEN=229;SVINSSEQ=GGCTTTCACTGCAAGCCTCCCAGGTTTAAGCGATTCTCCCGCCTCAGCTTCCAGAGTAGTTGGGACTACAGGCACACGCCACCACACCCAGCTAATTTTTGTATATGTTTAATAGAGATGGGGTCTCACTATGTTGGCCAGGATGGTGTTGATCTTTTGACCTCGTGATCTGCCCGCCTTGGCCTCCCAAAGTGCTGGGATTACAGGCGTCAGGCACCGCGCCCAGCCA TR:VR 52:3 30:0 chr1 193366331 r_40_0 C [chr17:45608769[C . PASS SVTYPE=BND;MATEID=r_40_1 TR:VR 115:6 48:0 chr17 45608769 r_40_1 C [chr1:193366331[C . PASS SVTYPE=BND;MATEID=r_40_0 TR:VR 115:6 48:0 chr10 129571722 r_82_0 G [chrX:135018571[A . PASS SVTYPE=BND;MATEID=r_82_1 TR:VR 73:11 75:0 chrX 135018571 r_82_1 A [chr10:129571722[A . PASS SVTYPE=BND;MATEID=r_82_0 TR:VR 73:11 75:0 chr10 75173755 r_60_0 A AG[chr8:137523300[ . PASS SVTYPE=BND;MATEID=r_60_1;SVINSLEN=1;SVINSSEQ=G TR:VR 150:9 39:0 chr8 137523300 r_60_1 T ]chr10:75173755]CT . PASS SVTYPE=BND;MATEID=r_60_0;SVINSLEN=1;SVINSSEQ=C TR:VR 150:9 39:0 chr5_GL000208v1_random 22311 i_992 G . PASS END=22311;SVTYPE=INS;SVINSLEN=172;SVINSSEQ=CATCTGTCTAGTTTTCATGTGAAGATATAGACTTTTCCAATGAAGACTTCAAAGTACTGCAATTATCCACTTACAGATTCTACAAAAAGAGTGTTTCAAAATTGCTCTATCTAAAGAAGTGTTCACCTCTGTGAGTTGAAGGCACACATCAAAAAGTAGTTTCTGAGAATCC TR:VR 104:6 49:0 chr8 81479468 r_423_0 C [chr8:81604559[C . Too_low_VAF SVTYPE=BND;MATEID=r_423_1 TR:VR 146:3 54:0 chr8 81604559 r_423_1 C [chr8:81479468[C . Too_low_VAF SVTYPE=BND;MATEID=r_423_0 TR:VR 146:3 54:0 chrX 156029610 d_1551 G . Too_low_VAF END=156029886;SVTYPE=DEL;SVLEN=-276 TR:VR 173:3 195:0 chrX 98377157 i_1331 A . PASS END=98377158;SVTYPE=INS;SVINSLEN=368;SVINSSEQ=TTATTTGCATAAAGTACAGCAAAGAATCACTATTTCTACATAGGCTAGATTTTAGTCTTTTTTTTTTTTTTTTTTTTGAGACAGAGTCTTGCTCTGTTACCCAGGCTGGAGTGCAGTAGCGCGAACTCAGCTCACTGCAAGCTCCGCCTCCTGGGTTCACGCCATTCTCCTGCCTCAGCCTCCCTAGTAGCTGGGACTACAGGCGCCCGCCACCACACCTGGCTAATTTTTTGTATTTTTAGTAGAGACGGGGTTCACCGTGTTAGCCAGGATGGTCTCGATCTCCTGACCTCATGATCCGCCCGCCTTGACCTCCCAAAGTGCTGGGATTACAGGCATGAGCCACCGCACCCAGCCTATTTTGAGTC TR:VR 51:3 30:0 chr1 193377718 r_41_0 C C[chr2:71070670[ . Too_low_VAF SVTYPE=BND;MATEID=r_41_1 TR:VR 99:4 55:0 chr2 71070670 r_41_1 C ]chr1:193377718]C . Too_low_VAF SVTYPE=BND;MATEID=r_41_0 TR:VR 99:4 55:0 chr16 1425140 d_508 T . PASS END=1425831;SVTYPE=DEL;SVLEN=-691 TR:VR 55:5 27:0 chr20 13398256 r_298 G . PASS END=15531042;SVTYPE=DUP;SVLEN=2132786 TR:VR 140:7 59:0 chr5 26412085 d_1188 A . PASS END=26412685;SVTYPE=DEL;SVLEN=-600 TR:VR 59:7 35:0 chr7 4992682 d_1325 C . PASS END=4992744;SVTYPE=DEL;SVLEN=-62 TR:VR 45:8 32:0 chr8 29562591 d_1368 G . Too_small_size END=29562629;SVTYPE=DEL;SVLEN=-38 TR:VR 33:7 18:0 chr8 81497654 r_424 A . Too_low_VAF END=83668103;SVTYPE=DUP;SVLEN=2170449 TR:VR 141:3 61:0 chrUn_KI270467v1 1895 d_1489 T . Too_low_VAF END=1961;SVTYPE=DEL;SVLEN=-66;SVINSLEN=23;SVINSSEQ=TTATGCAGAGTATATAGTATATA TR:VR 803:3 715:0 chr20 13457497 r_299_0 G [chr20:13457607[T . PASS SVTYPE=BND;MATEID=r_299_1 TR:VR 77:7 37:0 chr20 13457607 r_299_1 T [chr20:13457497[T . PASS SVTYPE=BND;MATEID=r_299_0 TR:VR 77:7 37:0 chr7 55353691 r_373_0 A A]chr7:83907356] . PASS SVTYPE=BND;MATEID=r_373_1 TR:VR 71:8 64:0 chr7 83907356 r_373_1 T T]chr7:55353691] . PASS SVTYPE=BND;MATEID=r_373_0 TR:VR 71:8 64:0 chr8 36653981 i_1150 C . PASS END=36653981;SVTYPE=INS;SVINSLEN=207;SVINSSEQ=AAGATGTTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCAATAAACATGTAGATTTATTTTAAGTCAGTTTGGTACATGATACAGATTGGTTTTGCAGTTTTTAATGAACTGAAATAGAAATGTCTAAATACAGCAGTATCTGCCTGTGCAACAAATATCTGTAGTATCTTGAGCCATTA TR:VR 36:5 27:0 chr8 82098883 r_425_0 C [chr8:84327341[A . Too_low_VAF SVTYPE=BND;MATEID=r_425_1 TR:VR 116:3 50:0 chr8 84327341 r_425_1 A [chr8:82098883[A . Too_low_VAF SVTYPE=BND;MATEID=r_425_0 TR:VR 116:3 50:0 chr1 195630723 i_49 G . PASS END=195630723;SVTYPE=INS;SVINSLEN=175;SVINSSEQ=ATATATCTCCCAATGCTATCCCTCCCCCCTCCCCCGACCCCACCACAGTCCCCAGAGTGTGATATTCCCCTTCCTGTGTCCATGTGATCTCATTGTTCAATTCCCACCTATGAGTGAGAATATGCGGTGTTTGGTTTTTTGTTCTTGCGATAGTTTACTGAGAATGATGGTTAAA TR:VR 63:4 26:0 chr10 77792281 r_61 G . Too_low_VAF END=77891677;SVTYPE=DEL;SVLEN=-99396 TR:VR 101:3 57:0 chr12 48206575 d_319 A . PASS END=48209510;SVTYPE=DEL;SVLEN=-2935 TR:VR 52:17 22:0 chr17 1020632 r_146 C . PASS END=12319406;SVTYPE=DEL;SVLEN=-11298774 TR:VR 61:21 67:0 chr2 163174639 r_288_0 A ]chr3:152002005]A . PASS SVTYPE=BND;MATEID=r_288_1 TR:VR 78:10 47:0 chr3 152002005 r_288_1 A A[chr2:163174639[ . PASS SVTYPE=BND;MATEID=r_288_0 TR:VR 78:10 47:0 chr2 41148095 r_216_0 T [chr2:41149232[G . PASS SVTYPE=BND;MATEID=r_216_1 TR:VR 44:13 22:0 chr2 41149232 r_216_1 G [chr2:41148095[G . PASS SVTYPE=BND;MATEID=r_216_0 TR:VR 44:13 22:0 chr5_GL000208v1_random 71327 i_994 T . PASS END=71327;SVTYPE=INS;SVINSLEN=683;SVINSSEQ=GAGGTGAATGAACAGATCACAAAGAAGTTTCTGAGAATGCTTCTATCTAGTGTTTATGTGAAGATATTCCCGTTTCCAGTGGAGGTCTCAAAACAGTCCAAATATCCAATTGCAGATTCTACAAGAAGAGTGTTTCAAAACTGCTCTATGAAAAGGTATGTTCAACACTGTGAGATGAATGCAAACGACACAAAGAAGTTGCTGAGAATGCTTCAGTATAGTTTCCATGTGAAGATATTTCCTTTTCGACCACAGCCCTCAAAGCACTCCAAATGTCTACTTGCAGATTCGATAAAAGAGTTTTTCAAAACTGCTCTATCAAAAGAAAGGTTCAACGCTGTGAGTTGAATCTACATATCACAGAAAAATTTCTGAGAATGCCTCTATCTACTTTTTATGTGAAGACATTTCCAGTTTCCAATGAAGGCCGCAAAGCGCTCCAAATATCTATTGCAGATTCTACAAAAAGAGTGTTTCAAAACTGCTCTATTTAACGAAGGTTCAACTCTGTGAGTTGAATTCACACATCACAAAGATGTTTCTGAGAATGCTTCCATCTAGTTTTTATGTGAAGATATTACTGTTTTCTATGAAGGCCTCAAAGTGGTCCAAATATCCACTTGCAGATTCTACAAAAAGAGGTTTTCAAAACTGCTCTATGAAGAGGTATGTTCAACTCTGTG TR:VR 115:7 59:1 chr7 55353721 r_374_0 C [chr7:83907357[G . PASS SVTYPE=BND;MATEID=r_374_1 TR:VR 71:7 64:0 chr7 83907357 r_374_1 G [chr7:55353721[G . PASS SVTYPE=BND;MATEID=r_374_0 TR:VR 71:7 64:0 chr8 37096904 r_395_0 A [chr8:37098595[G . PASS SVTYPE=BND;MATEID=r_395_1 TR:VR 47:11 30:0 chr8 37098595 r_395_1 G [chr8:37096904[G . PASS SVTYPE=BND;MATEID=r_395_0 TR:VR 47:11 30:0 chr8 82109875 r_426 T . Too_low_VAF END=88078486;SVTYPE=DEL;SVLEN=-5968611 TR:VR 146:3 38:0 chr1 197869188 r_42_0 A A]chr17:45608770] . PASS SVTYPE=BND;MATEID=r_42_1 TR:VR 104:10 52:0 chr17 45608770 r_42_1 T T]chr1:197869188] . PASS SVTYPE=BND;MATEID=r_42_0 TR:VR 104:10 52:0 chr10 8065253 d_170 T . PASS END=8065324;SVTYPE=DEL;SVLEN=-71 TR:VR 28:4 30:0 chr17 1026006 r_147_0 T [chr17:11701299[G . PASS SVTYPE=BND;MATEID=r_147_1 TR:VR 54:20 58:0 chr17 11701299 r_147_1 G [chr17:1026006[G . PASS SVTYPE=BND;MATEID=r_147_0 TR:VR 54:20 58:0 chr2 163174630 r_289_0 A A[chr3:152002001[ . PASS SVTYPE=BND;MATEID=r_289_1 TR:VR 78:8 47:0 chr3 152002001 r_289_1 A ]chr2:163174630]A . PASS SVTYPE=BND;MATEID=r_289_0 TR:VR 78:8 47:0 chr2 41446945 r_217_0 A A]chr2:41960566] . PASS SVTYPE=BND;MATEID=r_217_1 TR:VR 105:32 55:0 chr2 41960566 r_217_1 T T]chr2:41446945] . PASS SVTYPE=BND;MATEID=r_217_0 TR:VR 105:32 55:0 chr2 91478265 d_799 T . Too_low_VAF END=91478352;SVTYPE=DEL;SVLEN=-87 TR:VR 109:4 54:1 chr20 15550327 r_301 A . PASS END=15733180;SVTYPE=DUP;SVLEN=182853;SVINSLEN=10;SVINSSEQ=ATTTTAAAGT TR:VR 134:9 55:0 chr5 12460934 r_354_0 T T]chr5:27520356] . Too_low_VAF SVTYPE=BND;MATEID=r_354_1 TR:VR 132:5 51:0 chr5 27520356 r_354_1 C C]chr5:12460934] . Too_low_VAF SVTYPE=BND;MATEID=r_354_0 TR:VR 132:5 51:0 chr5 29184318 d_1189 A . PASS END=29184444;SVTYPE=DEL;SVLEN=-126 TR:VR 66:6 33:0 chr8 86107137 r_427_0 A [chr8:86892719[T . Too_low_VAF SVTYPE=BND;MATEID=r_427_1 TR:VR 163:5 58:0 chr8 86892719 r_427_1 T [chr8:86107137[T . Too_low_VAF SVTYPE=BND;MATEID=r_427_0 TR:VR 163:5 58:0 chrUn_KI270467v1 3590 d_1491 T . Too_low_VAF END=3687;SVTYPE=INS;SVINSLEN=231;SVINSSEQ=GGAGTACTTTGATATTTTATGTACAGTTAATAATCTATATTTTGGATACTTTGATATTTTATGTTCAGCATATAATATATATTTGATGTACTTTCATATTTTATGTACAGTATAAAATGTATACATGTTAAACTTTCTATATTTTATGTACAGTACAGAATAATATATATCTGGTGTACTTTATTAATATTTTATGTACAGAATAATAATATATATTTGATGTACTTTCAT TR:VR 797:3 752:1 chr1 197870860 r_43_0 T [chr3:1414795[ATAA . PASS SVTYPE=BND;MATEID=r_43_1;SVINSLEN=3;SVINSSEQ=ATA TR:VR 126:11 56:0 chr3 1414795 r_43_1 A [chr1:197870860[TATA . PASS SVTYPE=BND;MATEID=r_43_0;SVINSLEN=3;SVINSSEQ=TAT TR:VR 126:11 56:0 chr14 20528021 r_123 C . PASS END=56429740;SVTYPE=DUP;SVLEN=35901719 TR:VR 95:16 63:0 chr2 41446948 r_218_0 G [chr2:41960583[G . PASS SVTYPE=BND;MATEID=r_218_1 TR:VR 104:25 55:0 chr2 41960583 r_218_1 G [chr2:41446948[G . PASS SVTYPE=BND;MATEID=r_218_0 TR:VR 104:25 55:0 chr20 15738902 r_302 C . Too_low_VAF END=15827362;SVTYPE=DEL;SVLEN=-88460;SVINSLEN=6;SVINSSEQ=TTTTAA TR:VR 129:3 56:0 chr5 12460943 r_355_0 A [chr5:27520365[C . PASS SVTYPE=BND;MATEID=r_355_1 TR:VR 132:8 51:0 chr5 27520365 r_355_1 C [chr5:12460943[C . PASS SVTYPE=BND;MATEID=r_355_0 TR:VR 132:8 51:0 chr8 41404030 r_396_0 A [chr8:52219615[T . PASS SVTYPE=BND;MATEID=r_396_1 TR:VR 97:17 47:0 chr8 52219615 r_396_1 T [chr8:41404030[T . PASS SVTYPE=BND;MATEID=r_396_0 TR:VR 97:17 47:0 chr14 21222999 d_366 G . PASS END=21223054;SVTYPE=DEL;SVLEN=-55 TR:VR 57:11 26:0 chr16 22534770 d_512 A . PASS END=22535082;SVTYPE=DEL;SVLEN=-312;SVINSLEN=60;SVINSSEQ=CCCTCAGCTCCACCCTCAGCAGATGATAATATCAAGATACCTGCTGAGCGTCTGCTGATT TR:VR 88:7 38:1 chr17 28836324 r_155 A . PASS END=30036223;SVTYPE=DEL;SVLEN=-1199899 TR:VR 127:20 62:0 chr2 43045292 r_219_0 C C]chr8:37101998] . PASS SVTYPE=BND;MATEID=r_219_1 TR:VR 87:13 55:0 chr8 37101998 r_219_1 C C]chr2:43045292] . PASS SVTYPE=BND;MATEID=r_219_0 TR:VR 87:13 55:0 chr20 16444343 d_867 T . Too_small_size END=16444378;SVTYPE=DEL;SVLEN=-35 TR:VR 57:8 39:0 chr8 1317595 i_1136 G . PASS END=1317595;SVTYPE=INS;SVINSLEN=354;SVINSSEQ=CGTGTGCGAGTGCAGCGTCTCTCCAACAGTGGTCTACACTCGAGAAACTCGGCAGCTTTAAAAAATAGAGCGTGTGCGAGTACAGCGTCTCTCCCACAGTGGTCTACACTCCGAGAAACTCGGTAGCGTTTAAAAATAGAGCCTGTGCGAGTGCAAGCGTCTCTCCCACAGTGGTCTACACTCGAGAAACTCGGCAGCTTTTTAAAAATAGAGCGTGTGCGAGTGCAGCGTCTCTCAACAGTGGTCTACACTCGAGACACTCGGCAGCGTTTAAAAATAGAGCGTGTGTGCGAGTGCAGCGTCTCTCCAACAGTGGTCTACACTCGAGAAACTCGGCAGCTTTTAAAAATAGAG TR:VR 30:3 26:0 chr8 86813540 d_1382 A . PASS END=86813745;SVTYPE=DEL;SVLEN=-205 TR:VR 97:8 29:0 chrUn_KI270467v1 3754 d_1493 A . Too_small_size;Too_low_VAF END=3733;SVTYPE=INS;SVINSLEN=21;SVINSSEQ=CTTTGATGTATTTGATAGTTT TR:VR 797:3 712:0 chr14 21429794 r_124_0 C C[chrX:135024597[ . PASS SVTYPE=BND;MATEID=r_124_1 TR:VR 82:10 65:0 chrX 135024597 r_124_1 G ]chr14:21429794]G . PASS SVTYPE=BND;MATEID=r_124_0 TR:VR 82:10 65:0 chr2 44052580 r_220_0 A A[chr8:46674083[ . PASS SVTYPE=BND;MATEID=r_220_1 TR:VR 99:20 64:0 chr8 46674083 r_220_1 C ]chr2:44052580]C . PASS SVTYPE=BND;MATEID=r_220_0 TR:VR 99:20 64:0 chr7 57062503 r_375 C . PASS END=73660439;SVTYPE=DEL;SVLEN=-16597936 TR:VR 66:4 26:0 chr10 8245602 r_50_0 C C]chr10:13451374] . PASS SVTYPE=BND;MATEID=r_50_1 TR:VR 88:5 59:0 chr10 13451374 r_50_1 T T]chr10:8245602] . PASS SVTYPE=BND;MATEID=r_50_0 TR:VR 88:5 59:0 chr14 24583809 r_125_0 T [chr7:34800790[ATAACCACAAGCAATTCA . Too_low_VAF SVTYPE=BND;MATEID=r_125_1;SVINSLEN=17;SVINSSEQ=ATAACCACAAGCAATTC TR:VR 92:3 51:1 chr7 34800790 r_125_1 A [chr14:24583809[GAATTGCTTGTGGTTATA . Too_low_VAF SVTYPE=BND;MATEID=r_125_0;SVINSLEN=17;SVINSSEQ=GAATTGCTTGTGGTTAT TR:VR 92:3 51:1 chr17 1052403 i_375 A . Too_small_size END=1052403;SVTYPE=INS;SVINSLEN=45;SVINSSEQ=GGGAGGGTTCCGGAAGGGGCTGGGGGAGGGGTCACAGGGTCAGGG TR:VR 64:8 33:0 chr17 30359612 i_414 G . PASS END=30359612;SVTYPE=INS;SVINSLEN=236;SVINSSEQ=TGTAATATATAATACACATGTATATGTGTAATATATAATATACATGTATATGTGTAATATATAATACACATGTATATGTGTAATATATATTACACATGTATATGTGTAATATATAATACACATGTATATGTGTAATATATAATACACATGTATATGTGTAATATATAATACACATGTATATGTGTATATATATAATACACATGTATATGTGTAATATATAGTTTACACATGTATAT TR:VR 58:3 28:0 chr2 44080364 r_221_0 T ]chr8:50682830]T . PASS SVTYPE=BND;MATEID=r_221_1 TR:VR 82:14 53:0 chr8 50682830 r_221_1 T T[chr2:44080364[ . PASS SVTYPE=BND;MATEID=r_221_0 TR:VR 82:14 53:0 chr7 57064526 r_376 C . PASS END=73924993;SVTYPE=DEL;SVLEN=-16860467 TR:VR 88:6 41:0 chr8 88716796 r_428 A . Too_low_VAF END=89470711;SVTYPE=DEL;SVLEN=-753915 TR:VR 160:3 50:0 chr1 206421102 d_127 T . PASS END=206421160;SVTYPE=DEL;SVLEN=-58 TR:VR 51:5 28:0 chr10 8245615 r_51_0 T ]chrX:67734853]A . PASS SVTYPE=BND;MATEID=r_51_1 TR:VR 86:8 65:0 chrX 67734853 r_51_1 A A[chr10:8245615[ . PASS SVTYPE=BND;MATEID=r_51_0 TR:VR 86:8 65:0 chr12 652913 r_107_0 C C]chr5:56800630] . PASS SVTYPE=BND;MATEID=r_107_1 TR:VR 87:6 53:0 chr5 56800630 r_107_1 T T]chr12:652913] . PASS SVTYPE=BND;MATEID=r_107_0 TR:VR 87:6 53:0 chr17 30996423 r_156 A . PASS END=31196412;SVTYPE=DEL;SVLEN=-199989 TR:VR 107:10 51:0 chr18 9017267 r_177_0 C [chr8:81527455[C . Too_low_VAF SVTYPE=BND;MATEID=r_177_1 TR:VR 96:4 61:0 chr8 81527455 r_177_1 C [chr18:9017267[C . Too_low_VAF SVTYPE=BND;MATEID=r_177_0 TR:VR 96:4 61:0 chr2 182288892 i_651 T . PASS END=182288895;SVTYPE=INS;SVINSLEN=220;SVINSSEQ=GGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGGAGATATACCTAATGCTAGATGACACATTAGTGGGTGCAGCGCACACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAGAGTATAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACACATAAAAAAAA TR:VR 42:6 25:0 chr3 195782259 d_1063 G . PASS END=195782333;SVTYPE=INS;SVINSLEN=74;SVINSSEQ=ACATGAAGAGGGGTGGCGTGACCTGTGGATAATGAGGAAGCATTGGTGACAGGAAGAGGGGTGGTGTCACCTGT TR:VR 41:3 41:1 chr12 652929 d_305 A . PASS END=652972;SVTYPE=INS;SVINSLEN=170;SVINSSEQ=TGGTGAAACCCTATTTCTACTAAAAATATAAAAATTATTTGGGCATGGTGTCACACACCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATCGCTTGAAACTGGGAGGCAGAGGTTGCAGTGAGCTGAGAGTGCGCCACTGCATTCTAGCCTGGGGGACAGACC TR:VR 45:6 32:0 chr18 9018167 r_178_0 T T[chr8:83659857[ . Too_low_VAF SVTYPE=BND;MATEID=r_178_1 TR:VR 81:4 60:0 chr8 83659857 r_178_1 G ]chr18:9018167]G . Too_low_VAF SVTYPE=BND;MATEID=r_178_0 TR:VR 81:4 60:0 chr2 48377484 r_222_0 C ]chr3:79866004]T . PASS SVTYPE=BND;MATEID=r_222_1 TR:VR 123:22 51:0 chr3 79866004 r_222_1 T T[chr2:48377484[ . PASS SVTYPE=BND;MATEID=r_222_0 TR:VR 123:22 51:0 chr8 95124253 i_1177 G . Too_low_VAF END=95124258;SVTYPE=INS;SVINSLEN=85;SVINSSEQ=GAGCAGGAGTAGCACTGATTCTAGACTCCCTGAGAAATTGGTGGGGTCTATCTCAGAAATTCCAGCCAAACTGGCAGTGGGCGCA TR:VR 66:3 34:0 chr2 183478209 r_291_0 T TT[chr8:102159047[ . PASS SVTYPE=BND;MATEID=r_291_1;SVINSLEN=1;SVINSSEQ=T TR:VR 135:8 45:0 chr8 102159047 r_291_1 T ]chr2:183478209]AT . PASS SVTYPE=BND;MATEID=r_291_0;SVINSLEN=1;SVINSSEQ=A TR:VR 135:8 45:0 chr2 48449534 r_223_0 T ]chr21:36878057]G . PASS SVTYPE=BND;MATEID=r_223_1 TR:VR 122:11 48:0 chr21 36878057 r_223_1 G G[chr2:48449534[ . PASS SVTYPE=BND;MATEID=r_223_0 TR:VR 122:11 48:0 chr14_GL000225v1_random 93222 d_439 T . Too_small_size;Too_low_VAF END=93204;SVTYPE=INS;SVINSLEN=50;SVINSSEQ=TTCTACACTGATCACCCAGGTGATGTAACTCTTGTCTTGGATTTGCCTAT TR:VR 713:5 726:0 chr17 32917189 d_626 C . Too_small_size END=32917227;SVTYPE=DEL;SVLEN=-38 TR:VR 42:4 33:0 chr2 18754984 i_542 A . PASS END=18754984;SVTYPE=INS;SVINSLEN=193;SVINSSEQ=TCCTTTATAATATATAATATATATTATATATAACTTTATAATATATAATATATATTATATATAACTTTATAATATATAAATATATATTATATATAACTTTTATATATTATATAATATATATTATATATAACTTTATAATATATAATATATATTATATATAACTTTATAATATATAATATATATTATATATATC TR:VR 43:5 20:0 chr2 48945830 r_224_0 C C]chr2:50698607] . PASS SVTYPE=BND;MATEID=r_224_1 TR:VR 139:39 41:0 chr2 50698607 r_224_1 T T]chr2:48945830] . PASS SVTYPE=BND;MATEID=r_224_0 TR:VR 139:39 41:0 chr8 96636234 d_1385 T . PASS END=96637680;SVTYPE=DEL;SVLEN=-1446 TR:VR 64:10 34:0 chr14_GL000225v1_random 130879 d_484 A . Too_low_VAF END=131155;SVTYPE=DEL;SVLEN=-276;SVINSLEN=2;SVINSSEQ=GG TR:VR 812:3 775:0 chr19 1052741 i_491 G . PASS END=1052741;SVTYPE=INS;SVINSLEN=248;SVINSSEQ=GGGGAGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGAAGGGAGAGAGAGGAGGGGGAGGAGGGGGAGGAGGAGGAGGGGGAGGAGGAGGAGGAGGAGAGGAGGAGAGGGGGAGGAGGAGGGGGAGGAGTAGGGAGGGAGGAGGGAGGAGGAGGGGAGGGAGAGGAGAGGGGAGGAGGAGGAGGGAGGGGGAGGAGAAGAGGAAGAAGAGGAGGAGGAGGAAGAGAGGAGGAGGAGGAGGGGGAGAAGGA TR:VR 27:5 42:0 chr2 49447887 d_717 G . PASS END=49450042;SVTYPE=DEL;SVLEN=-2155 TR:VR 51:7 32:0 chr8 98058940 r_429_0 A [chr8:98087289[AAGTA . PASS SVTYPE=BND;MATEID=r_429_1;SVINSLEN=4;SVINSSEQ=AAGT TR:VR 131:16 48:0 chr8 98087289 r_429_1 A [chr8:98058940[ACTTA . PASS SVTYPE=BND;MATEID=r_429_0;SVINSLEN=4;SVINSSEQ=ACTT TR:VR 131:16 48:0 chr10 86030741 r_64_0 G G]chr10:117132752] . PASS SVTYPE=BND;MATEID=r_64_1 TR:VR 85:20 61:0 chr10 117132752 r_64_1 A A]chr10:86030741] . PASS SVTYPE=BND;MATEID=r_64_0 TR:VR 85:20 61:0 chr2 1908582 r_191_0 A ]chr3:255908]C . PASS SVTYPE=BND;MATEID=r_191_1 TR:VR 98:14 56:0 chr3 255908 r_191_1 C C[chr2:1908582[ . PASS SVTYPE=BND;MATEID=r_191_0 TR:VR 98:14 56:0 chr16 46390213 d_566 A . Too_low_VAF END=46390627;SVTYPE=DEL;SVLEN=-414;SVINSLEN=162;SVINSSEQ=TCATAAAATGGACTCGAATGGAATCATCGAATGCACTCCAATGGAATCAACATCGAACGGACCCTACCGGAATGATCAAATGGACTCGAATGGAATCATTGAATGGAAATGAATGGAATCATTGAATGGACTCAAATGGAATTATCGAACGGGCTCAAATGG TR:VR 979:3 957:0 chr2 192627449 i_652 C . PASS END=192627449;SVTYPE=INS;SVINSLEN=63;SVINSSEQ=TGAAGTTATACAGCTGGTATAGATATTTTTCCTACTAAGAGGGAAATATTTAGAGATTTAATT TR:VR 30:8 25:0 chr2 50439384 r_225_0 A [chr2:50445414[T . PASS SVTYPE=BND;MATEID=r_225_1 TR:VR 89:42 28:0 chr2 50445414 r_225_1 T [chr2:50439384[T . PASS SVTYPE=BND;MATEID=r_225_0 TR:VR 89:42 28:0 chr2 89814911 i_561 C . PASS END=89814911;SVTYPE=INS;SVINSLEN=2451;SVINSSEQ=GTTCGAGGACTTTCCATTACAGTCCATTCCATTATATTCCATTCCATTCATATTCCATTCCCTTCAATTCCATTCAATTCCATTCTACTTGTTTCCATTCCATTTGATTCCATTCCATTCGATTCCATTCCGATTGAGTCCATTCCATTCAATTCCATTCCATTCCATTCCATTCCATTCCGTTCAGTTCGATTCCAATCCATTTGATTCCATTTTGTTCCAGTCCATTCCATTCGAGTCCATTCCAATCCACTCCATTCCATTCGATTCCATTCCATTCGATTCCATTCCACTCGATTCCACTCTATTCCATTCCATTGAATTCCATTCTTTCCATTCCATTGCATTTTATACTATTAAATTACATTGCGTTCCATTGCATTCCACTTGATTACATTCCATTCGATTCCAATCCATTCGAATCAATTACATTGCAATCCATTACATTCGAGTCTGTTCTATTGCAGTCCATTCCATTCTGGTCCATTCCATTCAATTCCATTCCATTTGACTCCATTACATAGTATTGCATTCCATTCGAATCCATTCTATTCAAATCAATTCCATTTGAGAACATTCCATTCGAGTCCATTACATTTCGTTCCGTTCCATTCCATTCCATTCTATGCCATTCCATTCGATTCTATTCCATTCGAGTCCATTCCCATCGAGTCAATTCCATTCCATTCTGTTCAATACCATTCCATTTGATTTTATTCCATTCGACTCCACTCCATTCCATTCCGTTCGGTTAGATTCCATTCAATTCTATTCCTTGCCGTTCCATTCCATTCCGTTCCATTCCATTCCATTCGTTTCCATTCCATTGGAATCCACTCCACTCAAGTTCATTCCATTCAAGACCATTCCATTCGAGTCCATTCCATTCCATTCGATATCTTTCCATTACACTTCAATCCATTCTATTCCTTTCAATTCCATTCAATTCCATTCCATTCGATTCCATTACCTTCGATTCCATTCAATTCCATTCCATTCGATTCCATTCCATTCGACTCTGTTCCATTCGATTCCATTCCATTCCATTCTGTTCCGTTAGATTCCAATCAGTTCGATTCCATTTTCTTTCTGGTCCATTCCCTTCGAGTCCATTCCATTCCAGTCCAATCCATTAGATTCCATTCCATTCAATTCCATTCCATTTCACTCGATTCCACTCCGTTCCATTCCGTTGCATTCCATTCTATTCCATTCCATTGTTTTCCATTCCATTCCATTTGATTACATTCCATTCGATTCCATTCCATTCGAATCAATTACATTGCAATCCATTACATTCACGTCCGTTCTATTCCACTCCATTGAATTCCAGTCCATTCCATTTGATTCCATTCCATTCGATTCCGTTCCATACTATTGCATTCCATTCGTTTCCATTTGCGTTCGAATCAATTCCATTCGACACCATTCCTTTCGAGTCCATTCTATTTGAGTCCATTCCATTCGAGTCCATTACATTTGGATCCATTCCTTTCCATTCCATTCTTTTCATTCGAATCAATTCCATTCGACACCATTCCTTTCGAGTCCATTCTATTTGAGTCCATTCCATTCGAGTCCATTACATTTGGATCCATTCCTTTCCATTCCATTCCATTCCATTCGATGCCATTCCATTCAATTCTATTCCACTTGAGCGCATTCCATTTGAGTCCATTCCATTCCCCTCCATTCTTTTCGATGCCATTCCATTGGATTCTATTCCATTCGATTCCATTCCATTTCATTCCATTCCATCAGATTCCATTCAATTCTATTCCTTTACATTTCATTCCATTAGGTTCCATTTCGTTCCATTCCATTCCATTCGTTTCCATTCCAATCGAGTCCATTCCACTCCAGTTCATTCCGTTTGAGACCATTCCATTTGAGTCCTTTCCATTCGAGTCCAATCCATTCCATTCCATTCCATTCAATATCTTTCCATTACACTCCATTCCTTTCTATTCCTTTCGATTCCATTCAATTCCATTCCATTCCATTCCATTCGACTGCCTTCCATTCGACTCTGTTCCATTCGAGTCCATTCCATTCCATTCCATTCCGTCCTGTTCGATTCCATTATGCTCTTGTCCATTCCATTCAATTCCATTCGATTCCAGTCCATTCCATTTAACTCCATTCCATTCAAGTCCGTTTCATTTCATTACTTCCATTCCATTCCATTCCATTCCGATTGATTCCAATCCGTTCCATTCCATTTTGTTCCATTTCATTCCATTCGAGTCCATTCCATTCTAGTCCATTCTATTACATTGCATTCGAGTCCATTCCATTCCAATCCATTCCATTACATTGCATTCGAGTCCATTCCACTCCATGCTATTCCATCTGAGTCCATTCCATTCCATCCCATTCGAGACCATTCCCTTCCTTTAAATTCCACTCCATTTAACTCGGGTTCATTCCGTTGAATTCCACTGGAGTCAA TR:VR 116:6 65:0 chr3 112166385 r_342_0 G GCTGTTCCGAATCTTGGCTCACAGCCCTCAATAAGTTATTT[chr4:75154801[ . PASS SVTYPE=BND;MATEID=r_342_1;SVINSLEN=40;SVINSSEQ=CTGTTCCGAATCTTGGCTCACAGCCCTCAATAAGTTATTT TR:VR 98:7 57:1 chr4 75154801 r_342_1 A ]chr3:112166385]AAATAACTTATTGAGGGCTGTGAGCCAAGATTCGGAACAGA . PASS SVTYPE=BND;MATEID=r_342_0;SVINSLEN=40;SVINSSEQ=AAATAACTTATTGAGGGCTGTGAGCCAAGATTCGGAACAG TR:VR 98:7 57:1 chrUn_KI270538v1 87496 d_1497 C . Too_low_VAF END=87598;SVTYPE=INS;SVINSLEN=102;SVINSSEQ=CTCAAATCGCTCCAAATATCCACTTGCAGATACTACAATAATACCGTTTCAACACTGCTCTCTCCAATGGAAGGTTCAACTCTGTGAGTTGAATGCACACAT TR:VR 319:7 49:0 chr10 93770722 r_66_0 G G]chr10:111843822] . PASS SVTYPE=BND;MATEID=r_66_1 TR:VR 63:4 46:0 chr10 111843822 r_66_1 T T]chr10:93770722] . PASS SVTYPE=BND;MATEID=r_66_0 TR:VR 63:4 46:0 chr17 39500601 r_157_0 C [chr17:39502673[C . PASS SVTYPE=BND;MATEID=r_157_1 TR:VR 57:8 33:0 chr17 39502673 r_157_1 C [chr17:39500601[C . PASS SVTYPE=BND;MATEID=r_157_0 TR:VR 57:8 33:0 chr2 50443027 r_226 A . PASS END=50694574;SVTYPE=DEL;SVLEN=-251547 TR:VR 137:33 51:0 chr20 24643347 d_874 A . Too_small_size END=24643383;SVTYPE=DEL;SVLEN=-36 TR:VR 66:18 23:0 chr3 123236421 r_343_0 T T]chrX:84460839] . PASS SVTYPE=BND;MATEID=r_343_1 TR:VR 90:9 55:0 chrX 84460839 r_343_1 T T]chr3:123236421] . PASS SVTYPE=BND;MATEID=r_343_0 TR:VR 90:9 55:0 chr6 118259489 i_1033 C . PASS END=118259489;SVTYPE=INS;SVINSLEN=92;SVINSSEQ=CCAAAATATACCCAATTACTGGCAAAAAATGTTATTATTAAACTGATGAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA TR:VR 32:7 22:0 chr6 96574888 r_367 A . PASS END=96585764;SVTYPE=DEL;SVLEN=-10876 TR:VR 47:8 43:0 chrUn_KI270538v1 87731 d_1498 C . Too_low_VAF END=87841;SVTYPE=DEL;SVLEN=-110;SVINSLEN=106;SVINSSEQ=AAAAGGAAGGTTCAACTGTGTGAGTTGAATGCACACATCACAAAGCAGTTTCTGAGAACGCTTCTGTCTAGTTTGTATGTGAAGATATTCCCATTTACACCGTAGG TR:VR 321:5 49:0 chrX 21543602 d_1523 A . Too_small_size END=21543642;SVTYPE=DEL;SVLEN=-40 TR:VR 37:7 23:0 chr11 21994406 d_247 C . PASS END=21994783;SVTYPE=DEL;SVLEN=-377 TR:VR 40:11 21:0 chr17 40309962 r_158_0 T T]chr17:40345362] . PASS SVTYPE=BND;MATEID=r_158_1 TR:VR 94:22 54:0 chr17 40345362 r_158_1 C C]chr17:40309962] . PASS SVTYPE=BND;MATEID=r_158_0 TR:VR 94:22 54:0 chr2 50853711 r_227_0 G GGTACTTTGATATTTTATGTACAGTAT[chr3:93470362[ . Too_low_VAF SVTYPE=BND;MATEID=r_227_1;SVINSLEN=26;SVINSSEQ=GTACTTTGATATTTTATGTACAGTAT TR:VR 539:4 476:0 chr3 93470362 r_227_1 A ]chr2:50853711]ATACTGTACATAAAATATCAAAGTACA . Too_low_VAF SVTYPE=BND;MATEID=r_227_0;SVINSLEN=26;SVINSSEQ=ATACTGTACATAAAATATCAAAGTAC TR:VR 539:4 476:0 chr20 24643390 d_875 T . Too_small_size END=24643432;SVTYPE=DEL;SVLEN=-42;SVINSLEN=6;SVINSSEQ=CTATCA TR:VR 65:18 23:0 chr21 25515252 r_310_0 A A]chr21:25531070] . PASS SVTYPE=BND;MATEID=r_310_1 TR:VR 60:13 46:0 chr21 25531070 r_310_1 G G]chr21:25515252] . PASS SVTYPE=BND;MATEID=r_310_0 TR:VR 60:13 46:0 chr3 123236987 r_344_0 T [chrX:84461893[AA . PASS SVTYPE=BND;MATEID=r_344_1;SVINSLEN=1;SVINSSEQ=A TR:VR 91:10 56:0 chrX 84461893 r_344_1 A [chr3:123236987[TA . PASS SVTYPE=BND;MATEID=r_344_0;SVINSLEN=1;SVINSSEQ=T TR:VR 91:10 56:0 chr3 195788252 d_1068 T . Too_small_size END=195788236;SVTYPE=INS;SVINSLEN=30;SVINSSEQ=GTCGGTGACAGGAAGAGGTGGTGTGACCTG TR:VR 36:3 41:0 chr6 123763976 i_1034 T . PASS END=123764003;SVTYPE=INS;SVINSLEN=127;SVINSSEQ=CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAATTTAACAGCTTTATTGAGGTGTAACCAGCATACAATAAGTTTCACATATTTAACGTACACAAATTTGATGAGTTTTGACAC TR:VR 37:8 23:0 chrUn_KI270538v1 87731 i_1278 C . PASS END=87731;SVTYPE=INS;SVINSLEN=179;SVINSSEQ=CAATGCTCCTATGGAAGGTTCAACTCTGTGAGTTGAATGCACACATCACAAAGCAGTTCCTGAGAATGCTTCTGTCTAGTTTGTATGTGAAGATATTTCCTTTTCCATCATAGGCCTCTAATCGCTCCAAATATCCACTTGGAGATACTACAAAAATACCGTTTCAACACTGCTCTCTC TR:VR 320:16 49:0 chr1 212806746 i_54 C . PASS END=212806746;SVTYPE=INS;SVINSLEN=87;SVINSSEQ=TCTCCATATATATACACACACACACACACACACACACACACACACACACACACACACACACATATACACATATATACACATATATAC TR:VR 59:6 27:0 chr10 952439 i_87 C . PASS END=952439;SVTYPE=INS;SVINSLEN=265;SVINSSEQ=CCAACTGCATAACAGACAACCTTTTAAAGGAAGAAATCGCACCAAAGCCACAACCAACTGCATAACAGACAACCTTTAAAAGGAAGAAATCCTTTCAGCCCAGAACCAACTGCATAAAAGACAACCTTTAAAAGGAAGAAATCGCACCAGCCCAGAACCAACTGCCACATAACAGACAACCTTTAAAAAGGAAGAAATCGCACCAGCCCAGAACCAACTGCATAACAGACAACCTTTAAAGGAAGAAATCAGCACCAGCCACAAC TR:VR 61:6 31:0 chr12 93826220 i_219 T . Too_small_size END=93826220;SVTYPE=INS;SVINSLEN=38;SVINSSEQ=AAGAAATGAATAAAACTATCAATGCTAAATAAAATAAA TR:VR 34:6 29:0 chr14 43158845 d_373 G . PASS END=43160265;SVTYPE=DEL;SVLEN=-1420 TR:VR 52:12 28:0 chr2 19435515 r_197 G . PASS END=66525877;SVTYPE=DUP;SVLEN=47090362 TR:VR 90:10 52:0 chr2 51496414 r_228_0 T T]chr8:83662741] . Too_low_VAF SVTYPE=BND;MATEID=r_228_1 TR:VR 100:4 66:0 chr8 83662741 r_228_1 A A]chr2:51496414] . Too_low_VAF SVTYPE=BND;MATEID=r_228_0 TR:VR 100:4 66:0 chr21 26827990 r_311_0 G GTGGTTA]chr21:26829753] . PASS SVTYPE=BND;MATEID=r_311_1;SVINSLEN=6;SVINSSEQ=TGGTTA TR:VR 34:4 27:0 chr21 26829753 r_311_1 T TTAACCA]chr21:26827990] . PASS SVTYPE=BND;MATEID=r_311_0;SVINSLEN=6;SVINSSEQ=TAACCA TR:VR 34:4 27:0 chr3 123237311 r_345_0 A ATAT[chrX:84453188[ . PASS SVTYPE=BND;MATEID=r_345_1;SVINSLEN=3;SVINSSEQ=TAT TR:VR 90:10 56:0 chrX 84453188 r_345_1 T ]chr3:123237311]ATAT . PASS SVTYPE=BND;MATEID=r_345_0;SVINSLEN=3;SVINSSEQ=ATA TR:VR 90:10 56:0 chr4 171864341 i_858 A . PASS END=171864350;SVTYPE=INS;SVINSLEN=193;SVINSSEQ=TAAATATGCTCACATATGAGGGGTATAGTGATTAAATTCTTCAGGAACTGAAAGAAATTAGATAGCAAGATATGCTAGCATAGTCAGAAATTTTATTTCAGGGTACATACAGATTAAACAAGAAGGTATGTCTATAGTGTAACAAAATAACATTGGAAGCTGTAAATTGCCCACTGAATATTTCCTGATAGAC TR:VR 34:7 29:0 chr4 64251500 r_348 T . PASS END=64325111;SVTYPE=DEL;SVLEN=-73611;SVINSLEN=14;SVINSSEQ=CCACATATCTACTT TR:VR 59:4 53:0 chr16 28884430 d_516 C . PASS END=28885272;SVTYPE=DEL;SVLEN=-842 TR:VR 74:5 44:0 chr2 19453802 r_198_0 A [chr21:35546784[G . PASS SVTYPE=BND;MATEID=r_198_1 TR:VR 123:13 57:0 chr21 35546784 r_198_1 G [chr2:19453802[G . PASS SVTYPE=BND;MATEID=r_198_0 TR:VR 123:13 57:0 chr2 51868924 r_229 A . PASS END=58500491;SVTYPE=DEL;SVLEN=-6631567 TR:VR 82:16 47:0 chr2 90150424 r_269 T . Too_low_VAF END=90219274;SVTYPE=DUP;SVLEN=68850;SVINSLEN=42;SVINSSEQ=TCTGTCTCTAATGTAGATTTATGGATGTGTAGATAGTTTTGG TR:VR 111:3 67:1 chr5 134056094 d_1257 A . PASS END=134056785;SVTYPE=DEL;SVLEN=-691;SVINSLEN=7;SVINSSEQ=TCTTTTT TR:VR 36:11 24:0 chr1 33135885 r_2 G . PASS END=62080566;SVTYPE=DEL;SVLEN=-28944681 TR:VR 77:10 52:0 chr17 43824313 r_159_0 G [chr17:45905929[G . PASS SVTYPE=BND;MATEID=r_159_1 TR:VR 103:6 49:0 chr17 45905929 r_159_1 G [chr17:43824313[G . PASS SVTYPE=BND;MATEID=r_159_0 TR:VR 103:6 49:0 chr2 51901941 r_230_0 C ]chr8:41404361]C . PASS SVTYPE=BND;MATEID=r_230_1 TR:VR 75:17 42:0 chr8 41404361 r_230_1 C C[chr2:51901941[ . PASS SVTYPE=BND;MATEID=r_230_0 TR:VR 75:17 42:0 chr2 91508075 d_812 G . Too_small_size;Too_low_VAF END=91508058;SVTYPE=INS;SVINSLEN=0;SVINSSEQ= TR:VR 231:5 177:0 chr21 30660401 r_313 C . PASS END=33887583;SVTYPE=DUP;SVLEN=3227182 TR:VR 83:10 52:0 chr6 129077269 d_1296 T . PASS END=129077645;SVTYPE=DEL;SVLEN=-376 TR:VR 39:5 24:0 chr1 33135890 r_3_0 A ]chr12:111868439]T . PASS SVTYPE=BND;MATEID=r_3_1 TR:VR 71:8 46:0 chr12 111868439 r_3_1 T T[chr1:33135890[ . PASS SVTYPE=BND;MATEID=r_3_0 TR:VR 71:8 46:0 chr2 51913889 r_231_0 C C[chr8:51879980[ . PASS SVTYPE=BND;MATEID=r_231_1 TR:VR 89:21 55:0 chr8 51879980 r_231_1 A ]chr2:51913889]A . PASS SVTYPE=BND;MATEID=r_231_0 TR:VR 89:21 55:0 chr21 31037051 r_314_0 T T[chr6:131833847[ . PASS SVTYPE=BND;MATEID=r_314_1 TR:VR 85:6 66:0 chr6 131833847 r_314_1 G ]chr21:31037051]G . PASS SVTYPE=BND;MATEID=r_314_0 TR:VR 85:6 66:0 chr6 130670645 d_1297 A . PASS END=130670717;SVTYPE=DEL;SVLEN=-72 TR:VR 51:16 36:0 chr8 137938895 d_1400 A . PASS END=137938942;SVTYPE=DEL;SVLEN=-47 TR:VR 79:8 37:0 chr8 50607538 d_1374 C . PASS END=50607662;SVTYPE=DEL;SVLEN=-124;SVINSLEN=3;SVINSSEQ=AAG TR:VR 58:7 20:0 chr1 222488681 i_58 G . PASS END=222488681;SVTYPE=INS;SVINSLEN=326;SVINSSEQ=TCCGGGAGGGAGGTGGGGGGGGTCAGCCCCCCGCCCGGCCAGACGCCCCATCTGGGAGGGAGGTTGGGGGGTCAGCCCCCCACCTGGCGGCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGAGTCAGCCCCCCGCCCGGCCAGCCGCCCCGTCCGGGAGGGAGGTGGGGGGGTCAGCCCCCCGCCCGGCCAGCCGCCCCATCCGGGAGGGAGGTGGGGGGGTCAGCCCCCGCCCGGCCAGCCGCCCCGTCCGGGAGGTGAGGGGCGCCTCTGCCCGGCCACCCCTACTGGGAAGTGAGGAGCCCCTCTGCCGGGCCAGCCGCCCCAT TR:VR 50:4 34:0 chr11 108794387 r_94_0 T [chr11:120796789[A . PASS SVTYPE=BND;MATEID=r_94_1 TR:VR 65:5 63:0 chr11 120796789 r_94_1 A [chr11:108794387[A . PASS SVTYPE=BND;MATEID=r_94_0 TR:VR 65:5 63:0 chr13 105937616 d_352 G . PASS END=105938065;SVTYPE=DEL;SVLEN=-449 TR:VR 24:6 24:0 chr17 1131221 d_608 C . PASS END=1131454;SVTYPE=DEL;SVLEN=-233;SVINSLEN=136;SVINSSEQ=CCTTGCACACCAAATGCAGTGCCTGACACGCACACAGCTCCCCCCTTTGCACACCAAATGCAGTGCCTGACACGCACACAGCTCCCCCTTTGCACCACCAAATGCAGTGCCTGCCACGTGCACAGCTCCCCTTTGC TR:VR 45:5 37:1 chr2 51914641 r_232_0 A [chr2:54040065[G . PASS SVTYPE=BND;MATEID=r_232_1 TR:VR 81:11 61:0 chr2 54040065 r_232_1 G [chr2:51914641[G . PASS SVTYPE=BND;MATEID=r_232_0 TR:VR 81:11 61:0 chr20 26311094 d_877 T . Too_low_VAF END=26311402;SVTYPE=DEL;SVLEN=-308;SVINSLEN=275;SVINSSEQ=TCTTTGGAAATGGGATATCTTCACATAAAAACTAGACAGAAGAATTCTCAGAAACTTCTTTGTGATGTGTGCATTCAACTCAGAGAGTTGAACCTTTCTTTTGAGAGTGCTGTTTTGAAACACTCTTTTTGTACTATCTGCAATTGGAAACAGGATATCTTAACCGAAACTAGACAGAAGCATTCTCAGAAACTTCTTTGTGAAGTGTGCATTCAACTCACAGAGCTGAACCGATCTTTTGACTCAGCAGTTTAGAAACACTCTTTTTGTAGTAT TR:VR 71:3 29:0 chr21 32565065 r_315_0 T T]chr21:36875368] . PASS SVTYPE=BND;MATEID=r_315_1 TR:VR 101:30 56:0 chr21 36875368 r_315_1 A A]chr21:32565065] . PASS SVTYPE=BND;MATEID=r_315_0 TR:VR 101:30 56:0 chr4 179896155 d_1135 T . PASS END=179896452;SVTYPE=DEL;SVLEN=-297 TR:VR 27:10 27:0 chr4 69496603 d_1112 G . PASS END=69496731;SVTYPE=DEL;SVLEN=-128 TR:VR 18:8 28:0 chr7 63508266 r_377_0 G [chr7:73660440[A . PASS SVTYPE=BND;MATEID=r_377_1 TR:VR 77:4 66:0 chr7 73660440 r_377_1 A [chr7:63508266[A . PASS SVTYPE=BND;MATEID=r_377_0 TR:VR 77:4 66:0 chr11 109501622 r_95_0 T [chr7:5896057[T . PASS SVTYPE=BND;MATEID=r_95_1 TR:VR 90:9 49:0 chr7 5896057 r_95_1 T [chr11:109501622[T . PASS SVTYPE=BND;MATEID=r_95_0 TR:VR 90:9 49:0 chr17 57444930 r_160_0 A A]chr17:82548428] . PASS SVTYPE=BND;MATEID=r_160_1 TR:VR 74:9 59:0 chr17 82548428 r_160_1 T T]chr17:57444930] . PASS SVTYPE=BND;MATEID=r_160_0 TR:VR 74:9 59:0 chr2 20045909 r_199_0 C C[chr3:1745731[ . PASS SVTYPE=BND;MATEID=r_199_1 TR:VR 134:17 46:0 chr3 1745731 r_199_1 C ]chr2:20045909]C . PASS SVTYPE=BND;MATEID=r_199_0 TR:VR 134:17 46:0 chr2 54068071 r_233_0 G G]chr2:58519543] . PASS SVTYPE=BND;MATEID=r_233_1 TR:VR 57:7 68:0 chr2 58519543 r_233_1 G G]chr2:54068071] . PASS SVTYPE=BND;MATEID=r_233_0 TR:VR 57:7 68:0 chr21 32700787 r_316_0 A ]chr3:93470586]TTTGATATTTTATGTACAGTATATAAAATATAGTTTGTGAACTTTGATATTTCATGTAGAGTATATAATATATATTTGGGGTACTTTGATATTTTATGTACAGTATATAATCTATATTTGATGTACTTTCATATTTTATGTACCTAATATATATTTGATGTAATTTCATATTTTCTGTACAGTATATAATGTATAGTTGTGTACTTATATC . Too_low_VAF SVTYPE=BND;MATEID=r_316_1;SVINSLEN=210;SVINSSEQ=TTTGATATTTTATGTACAGTATATAAAATATAGTTTGTGAACTTTGATATTTCATGTAGAGTATATAATATATATTTGGGGTACTTTGATATTTTATGTACAGTATATAATCTATATTTGATGTACTTTCATATTTTATGTACCTAATATATATTTGATGTAATTTCATATTTTCTGTACAGTATATAATGTATAGTTGTGTACTTATAT TR:VR 519:3 492:0 chr3 93470586 r_316_1 C CATATAAGTACACAACTATACATTATATACTGTACAGAAAATATGAAATTACATCAAATATATATTAGGTACATAAAATATGAAAGTACATCAAATATAGATTATATACTGTACATAAAATATCAAAGTACCCCAAATATATATTATATACTCTACATGAAATATCAAAGTTCACAAACTATATTTTATATACTGTACATAAAATATCAAA[chr21:32700787[ . Too_low_VAF SVTYPE=BND;MATEID=r_316_0;SVINSLEN=210;SVINSSEQ=ATATAAGTACACAACTATACATTATATACTGTACAGAAAATATGAAATTACATCAAATATATATTAGGTACATAAAATATGAAAGTACATCAAATATAGATTATATACTGTACATAAAATATCAAAGTACCCCAAATATATATTATATACTCTACATGAAATATCAAAGTTCACAAACTATATTTTATATACTGTACATAAAATATCAAA TR:VR 519:3 492:0 chr8 56302212 r_397 G . PASS END=137525946;SVTYPE=DUP;SVLEN=81223734 TR:VR 150:9 40:0 chr1 143497174 i_38 G . PASS END=143497174;SVTYPE=INS;SVINSLEN=228;SVINSSEQ=CCGGCGGCTTTTTACCCCCCGCCGCCTCAGCTTGTTGCCCGCCACGGCTTTTTACCCCATGCCGCCGCGGCTTTTGCCCGCCGCGGCTTTGTACCCCCCTCGCCGCCGCGGCTTTCTGCCACCCACCCGCCGCCGCGGCTTTTTGCCCCTCCGCCGCCGCGGCACGCCCCCACCCTGCCTCGGCTTTTTGCCCGCCGCGGCTTTTTGCCCCCGCAGCTTTTTGCACCC TR:VR 102:6 65:1 chr11 112342914 r_96 A . PASS END=120794566;SVTYPE=DEL;SVLEN=-8451652;SVINSLEN=42;SVINSSEQ=AGCTTTTAGATGTGATAAGTGAATTTAGTAAAGTTTTAGGAT TR:VR 77:10 57:0 chr11 31517045 r_84 T . Too_low_VAF END=31615736;SVTYPE=DEL;SVLEN=-98691 TR:VR 66:3 54:0 chr14 59749089 r_127_0 T [chrX:50225979[T . PASS SVTYPE=BND;MATEID=r_127_1 TR:VR 120:6 68:0 chrX 50225979 r_127_1 T [chr14:59749089[T . PASS SVTYPE=BND;MATEID=r_127_0 TR:VR 120:6 68:0 chr17 57444934 r_161_0 G [chr17:82548426[T . PASS SVTYPE=BND;MATEID=r_161_1 TR:VR 74:5 59:0 chr17 82548426 r_161_1 T [chr17:57444934[T . PASS SVTYPE=BND;MATEID=r_161_0 TR:VR 74:5 59:0 chr2 54069155 r_234_0 T ]chr8:51891091]C . PASS SVTYPE=BND;MATEID=r_234_1 TR:VR 80:15 68:0 chr8 51891091 r_234_1 C C[chr2:54069155[ . PASS SVTYPE=BND;MATEID=r_234_0 TR:VR 80:15 68:0 chr21 32763332 r_317 G . PASS END=32771044;SVTYPE=DEL;SVLEN=-7712 TR:VR 45:25 39:0 chr7 107009431 d_1351 A . PASS END=107009494;SVTYPE=DEL;SVLEN=-63 TR:VR 17:8 34:0 chr7 63655607 r_378_0 G [chr7:73869400[C . PASS SVTYPE=BND;MATEID=r_378_1 TR:VR 78:8 61:0 chr7 73869400 r_378_1 C [chr7:63655607[C . PASS SVTYPE=BND;MATEID=r_378_0 TR:VR 78:8 61:0 chr9 125262486 d_1430 T . PASS END=125262539;SVTYPE=DEL;SVLEN=-53 TR:VR 38:15 42:0 chr1 230240555 d_133 G . PASS END=230240629;SVTYPE=DEL;SVLEN=-74 TR:VR 45:6 29:0 chr11 114523472 d_262 T . PASS END=114523650;SVTYPE=DEL;SVLEN=-178 TR:VR 34:6 34:0 chr14 66464615 i_260 T . PASS END=66464615;SVTYPE=INS;SVINSLEN=95;SVINSSEQ=GACATCTGCATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTTTCTTTTTTTTTTTTTTTATTATACTCTACCAGCATGGCACATGTAG TR:VR 42:7 19:0 chr17 57901868 r_162_0 A A]chr19:46023561] . PASS SVTYPE=BND;MATEID=r_162_1 TR:VR 83:8 51:0 chr19 46023561 r_162_1 G G]chr17:57901868] . PASS SVTYPE=BND;MATEID=r_162_0 TR:VR 83:8 51:0 chr2 54348153 r_235_0 T T]chr2:54348355] . PASS SVTYPE=BND;MATEID=r_235_1 TR:VR 65:13 34:0 chr2 54348355 r_235_1 T T]chr2:54348153] . PASS SVTYPE=BND;MATEID=r_235_0 TR:VR 65:13 34:0 chr4 18219985 i_838 T . PASS END=18219985;SVTYPE=INS;SVINSLEN=185;SVINSSEQ=TTTTTTTTTTTTTTTTTTTGAGACAGAGTCTTGCTCTGTCGCCCAGGCTGGAGTGCAGTGGCGTGATCTCGGCTCACTGCAAGCTCCGCCTCCCAGGTTCACGCCATTCTCCTGCCTCAGCCTCCGGAGTAGCTGGGACTACAGGCACCCACCACCAAGCCTGGCTAATTTTGTTTCCTGACTTT TR:VR 34:3 37:0 chr5 46265399 d_1197 A . Too_low_VAF END=46265452;SVTYPE=INS;SVINSLEN=277;SVINSSEQ=CCTGCTCCATCAAAAGAAAGTTTTAAATCTGTCAGATGAATTCTCACAGCAAAGAAGTTTCTCAGAAAGATTCATTCTTGTTTTTGTCTAGAGATATTTCCATTTTCACCATAGGCCTCAACACATTCTGAAATATCCCTTTATCTGAAGATATTTCTTTTCAACATAGGCTTCATTGTGTTCCCAATTACCGTTTTGCAGATTCTACAAAAACACTGTTTCCAAACTGCTGCACCAAAAGAAGATTTAACTCTGTGAGATGAAAGAACACATCACA TR:VR 136:3 20:0 chr7 119838615 r_385_0 A [chr7:148477926[A . PASS SVTYPE=BND;MATEID=r_385_1 TR:VR 68:5 49:0 chr7 148477926 r_385_1 A [chr7:119838615[A . PASS SVTYPE=BND;MATEID=r_385_0 TR:VR 68:5 49:0 chr8 59201160 r_399_0 A ATATATAT]chr8:90230459] . Too_low_VAF SVTYPE=BND;MATEID=r_399_1;SVINSLEN=7;SVINSSEQ=TATATAT TR:VR 136:6 58:0 chr8 90230459 r_399_1 T TATATATA]chr8:59201160] . Too_low_VAF SVTYPE=BND;MATEID=r_399_0;SVINSLEN=7;SVINSSEQ=ATATATA TR:VR 136:6 58:0 chr1 143683696 r_14_0 C C[chr20:10277895[ . Too_low_VAF SVTYPE=BND;MATEID=r_14_1 TR:VR 106:4 52:0 chr20 10277895 r_14_1 A ]chr1:143683696]A . Too_low_VAF SVTYPE=BND;MATEID=r_14_0 TR:VR 106:4 52:0 chr1 231799823 r_45_0 T [chrX:2227709[CG . Too_low_VAF SVTYPE=BND;MATEID=r_45_1;SVINSLEN=1;SVINSSEQ=C TR:VR 217:9 167:0 chrX 2227709 r_45_1 G [chr1:231799823[GG . Too_low_VAF SVTYPE=BND;MATEID=r_45_0;SVINSLEN=1;SVINSSEQ=G TR:VR 217:9 167:0 chr11 115164701 r_97 C . PASS END=121039093;SVTYPE=DEL;SVLEN=-5874392 TR:VR 68:7 58:0 chr13 109346822 d_356 T . PASS END=109347460;SVTYPE=DEL;SVLEN=-638;SVINSLEN=9;SVINSSEQ=GTGTGTGTA TR:VR 24:6 30:0 chr14 68334908 i_261 T . PASS END=68334908;SVTYPE=INS;SVINSLEN=65;SVINSSEQ=ATATCATATATTTTATGATATATAGGATAGATATATATTTTATGATATATAGGATAGATATATCA TR:VR 30:7 24:0 chr17 57901887 r_163_0 G [chr19:46023566[G . PASS SVTYPE=BND;MATEID=r_163_1 TR:VR 83:8 51:0 chr19 46023566 r_163_1 G [chr17:57901887[G . PASS SVTYPE=BND;MATEID=r_163_0 TR:VR 83:8 51:0 chr18 1223825 r_168_0 A ATCATGTGAATCTCTGTAATAATACTCCTCACTTAT]chr18:4875115] . PASS SVTYPE=BND;MATEID=r_168_1;SVINSLEN=35;SVINSSEQ=TCATGTGAATCTCTGTAATAATACTCCTCACTTAT TR:VR 130:8 67:0 chr18 4875115 r_168_1 T TATAAGTGAGGAGTATTATTACAGAGATTCACATGA]chr18:1223825] . PASS SVTYPE=BND;MATEID=r_168_0;SVINSLEN=35;SVINSSEQ=ATAAGTGAGGAGTATTATTACAGAGATTCACATGA TR:VR 130:8 67:0 chr19 246596 i_481 A . PASS END=246646;SVTYPE=DEL;SVLEN=-50 TR:VR 46:3 43:0 chr2 54348362 r_236_0 A [chr2:62237774[C . Too_low_VAF SVTYPE=BND;MATEID=r_236_1 TR:VR 147:4 65:0 chr2 62237774 r_236_1 C [chr2:54348362[C . Too_low_VAF SVTYPE=BND;MATEID=r_236_0 TR:VR 147:4 65:0 chr1 143961899 r_15_0 T T[chr20:15570106[ . Too_low_VAF SVTYPE=BND;MATEID=r_15_1 TR:VR 113:3 62:0 chr20 15570106 r_15_1 A ]chr1:143961899]A . Too_low_VAF SVTYPE=BND;MATEID=r_15_0 TR:VR 113:3 62:0 chr18 12535494 r_179_0 T [chr19:34393867[C . PASS SVTYPE=BND;MATEID=r_179_1 TR:VR 65:5 51:0 chr19 34393867 r_179_1 C [chr18:12535494[C . PASS SVTYPE=BND;MATEID=r_179_0 TR:VR 65:5 51:0 chr2 2142743 r_192_0 A A]chr21:36883357] . PASS SVTYPE=BND;MATEID=r_192_1 TR:VR 71:13 65:0 chr21 36883357 r_192_1 A A]chr2:2142743] . PASS SVTYPE=BND;MATEID=r_192_0 TR:VR 71:13 65:0 chr2 55791280 r_237_0 G [chr21:24869973[A . PASS SVTYPE=BND;MATEID=r_237_1 TR:VR 111:20 56:0 chr21 24869973 r_237_1 A [chr2:55791280[A . PASS SVTYPE=BND;MATEID=r_237_0 TR:VR 111:20 56:0 chr5 46268801 i_925 A . Too_low_VAF END=46268804;SVTYPE=INS;SVINSLEN=439;SVINSSEQ=AAACTGTTTCTCAGAACGTTTCTTTCTAGGTGTTTTCTGTAGATATTTCCTTTTTCGTCACAGGCCTCAGTGTGCTCACAAATAACTCTTTGCACTTTCTGCCAGAAGGGTGTTTCCAAACAGCTCCATCAAAGGAAAGATTTAACACTGTGAAATGAATGCACACATCTCAAATCAGCATCTCAGAAAGCTTTTTTCTAGTTTTTTTAAATTATACTTTAAGTTTTAGGGTACATGTGCACAATGTGCAGGTTAGTTGCATATGTATACATGTGCCATGTTGGTGTGCTGCATTTTATCTGATGATATTTCCTTTATCACCACAGTCCTCTTTGTATTACATAATATCCTTTCACAGATGCTATAAAAACAATGTTTCCAAACTCCTCAATCAAAAAACAGGTTTAACTCTGTGAGTTCAATGCACACATGACAAATC TR:VR 120:3 14:0 chr8 60537171 i_1161 T . PASS END=60537171;SVTYPE=INS;SVINSLEN=134;SVINSSEQ=CTAAAACAAAAATTTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTATTATACTCTAAGTTTTAGGGTACATTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAAC TR:VR 48:4 27:0 chr1 143993189 i_40 T . PASS END=143993305;SVTYPE=INS;SVINSLEN=234;SVINSSEQ=ACACTTTTCATCCAACCCAAGATGAGAGACGAAACCCTTGCTATCTCAAAAAACGATCCAAAATGTAATTTGTTTAAAAATGGTAGTTTTTAACTTTTTATTTTATTTGAATAACTTACACTTTTCATCCAACCCAAGATGAGAGACGAAACCCTTGCTATCTCAAAAAACGATCCAAAATGTAATTTGTTTAAAAATGGTAGTTTTTAACTTTTAAAATTGTTCCATCTAAAA TR:VR 60:6 18:0 chr11 120795920 r_98_0 T T]chr18:24871941] . PASS SVTYPE=BND;MATEID=r_98_1 TR:VR 60:9 59:0 chr18 24871941 r_98_1 T T]chr11:120795920] . PASS SVTYPE=BND;MATEID=r_98_0 TR:VR 60:9 59:0 chr17 11705157 i_389 C . PASS END=11705157;SVTYPE=INS;SVINSLEN=361;SVINSSEQ=TTTGCTACCGATGACCTATTTCTCTTTTATTTCCTTTTTAATTATGGCATAATTTCTCAACATAACATGTCAAAACTTATACACCCTTAAATATTAAAAAATAATACAATGTAAGCAATATTTTAAATACAATATTTAATGATTAGATACATTAGGTTTATTATATTACTTATAACATTCCATTATATAAAAATTCATTTTTTGTTTATTTATTCAGATTAAACAACTATTAAGGCTGAATGTCTCATGTCTGTAACCCCAGCACTTTGAGAGGCTGAGGCGAGCAGAACACTTGAGCCCAACAGTTAAAGAAGAGCCTGGGCAACAAGGCAAAACCCTATCTCTACAAAACTCAGCCCAG TR:VR 32:23 24:0 chr17 6537197 r_148_0 A A]chr17:11669622] . PASS SVTYPE=BND;MATEID=r_148_1 TR:VR 51:16 50:0 chr17 11669622 r_148_1 C C]chr17:6537197] . PASS SVTYPE=BND;MATEID=r_148_0 TR:VR 51:16 50:0 chr18 14508730 r_181 A . PASS END=14856860;SVTYPE=DEL;SVLEN=-348130 TR:VR 52:7 53:0 chr2 55792988 r_238 C . PASS END=57394228;SVTYPE=DEL;SVLEN=-1601240 TR:VR 133:26 64:0 chr21 33373113 r_318 A . PASS END=33441823;SVTYPE=DUP;SVLEN=68710 TR:VR 129:9 58:0 chr8 140826375 i_1194 A . PASS END=140826384;SVTYPE=INS;SVINSLEN=1433;SVINSSEQ=CTGTAGGCATTTATCAAAATTCATAGAACTTTACCCTAGAAAGGATGAATTTTACTATCTGTAAATTTTACTTCCCTGCAAATGGCCCAAAGTTGCATGAAATGATGCTCAGCATCACTAATCAGGGAAATACAAATCAAAATCACAATGAGCTATCATCTAACACCTGCTAAGATGACTATTACAGGCCTGGCGCAGTGGCTCACACCTGTAATCCCAGCACTTTGGGAGGTCAAGGTGGGTGGATCACTTGAGGTCAGGAGTTCGAGACCAGCTTGGCCAACAGGGTGAAAGCTTGTCTCTACTAAAAATACAAAAATTAGCCAGGCATGGTGGCATGTCCCTGTAATCCCAGCTACTTGAGAGGCTGAGGCAGGAGAATCGCTTCAACCTGGGAGGTGGAGGTTGCAGTGAGCCGAGATCACACCACTGCACTCCAGCCTGGGTGACAGAATGAGACTCTGTCTCCAAAAACAAAGAACAAACAAACAAAAAAAAGATGGCTTTTATTTAAAAGGATGAATGCAATGTATAAAAAAGATTTTTACCTTCATCGTATTTTTGTTATCAAATATTATTTTAATAATTGAAAACATTTAAACGTTTAAGAGTATGTAATTTTATGAATTACACAGGAAGCAAAACTTACTACATATCCATTATATATCTAAATATGCAGCATCCAGAAAAAAGCATTCATTTAAAAATGTTATTTAGATCAATGGTTTCTTTATTCTACTCTGAGACATTGGCGTTTCAAATAAAAAGATGCCCTAAATTGAATGTTCCATTTTGTTTCCTGTTATTCTTTGATTCTAGCTAGTTATCAGTTGTCAAAACAACAGACTAAGCCTAACACCTAACACCATGTCAAATATATATTTTTTTAATCTCTATAACCTCATCAGAACTTTATTTCCTCAGCTTGGCCTGGACACCCTCAGCTTCAGCAAACAGGGAGTCAGTGCAACAGTGCATAAAATATGAGGGCTCTGAAAGCCTGGGCCTGCTTAGGGGAGTGTGTAATTTAATAAAGTGTTCATTGATGTCAGCACACGGGCTCATCAGACTCATGTTGATGCCGACGCCTGCAGCACAGAGACTCCTAGTCCTAATTAGATGACTGAAGTAAGATTACATTTTCCCTTGGAGACAGGCACAAGGGTGGGAGAGTTACTCTCAAAGGGATTTAGACTTACAAGTATATGATGGAACAGAACAAAAATAGGGAAAGGCACACTTTAGGGAAACCAACGAGGGAAATGAACTTAACAGAGTCGCATTATTTATAAGAAGGAAAGTTAAAAAAACCACCGTCAGGTGTCTGTTGTTCCTACTTTATTCACACAGAAAGTCTGACATAAATTATAAATAAGGAAAAATATTTTTATGACTTATACACTAAGCTTACAACAATCCCTGGCAAATCCCAA TR:VR 82:19 26:0 chr9 133030321 d_1432 G . PASS END=133032150;SVTYPE=DEL;SVLEN=-1829 TR:VR 34:7 32:0 chr1 46240426 r_4_0 G [chr19:36222835[AGGT . PASS SVTYPE=BND;MATEID=r_4_1;SVINSLEN=3;SVINSSEQ=AGG TR:VR 93:7 57:1 chr19 36222835 r_4_1 T [chr1:46240426[CCTT . PASS SVTYPE=BND;MATEID=r_4_0;SVINSLEN=3;SVINSSEQ=CCT TR:VR 93:7 57:1 chr11 120800774 r_99 T . Too_low_VAF END=129083233;SVTYPE=DEL;SVLEN=-8282459 TR:VR 76:3 54:0 chr11 47564712 r_85_0 A [chr11:47565813[A . PASS SVTYPE=BND;MATEID=r_85_1 TR:VR 30:5 30:0 chr11 47565813 r_85_1 A [chr11:47564712[A . PASS SVTYPE=BND;MATEID=r_85_0 TR:VR 30:5 30:0 chr14_KI270723v1_random 19961 r_135_0 C CCCTCCGGTAAAGCTGGAACACTATCTGTTCCTGAGGTATCAGGT]chr14_KI270724v1_random:16865] . Too_low_VAF SVTYPE=BND;MATEID=r_135_1;SVINSLEN=44;SVINSSEQ=CCTCCGGTAAAGCTGGAACACTATCTGTTCCTGAGGTATCAGGT TR:VR 66:3 59:1 chr14_KI270724v1_random 16865 r_135_1 G GACCTGATACCTCAGGAACAGATAGTGTTCCAGCTTTACCGGAGG]chr14_KI270723v1_random:19961] . Too_low_VAF SVTYPE=BND;MATEID=r_135_0;SVINSLEN=44;SVINSSEQ=ACCTGATACCTCAGGAACAGATAGTGTTCCAGCTTTACCGGAGG TR:VR 66:3 59:1 chr18 14508730 r_180 A . PASS END=14855498;SVTYPE=DEL;SVLEN=-346768 TR:VR 51:3 53:0 chr2 55793088 r_239 T . PASS END=59514606;SVTYPE=DUP;SVLEN=3721518;SVINSLEN=2;SVINSSEQ=TG TR:VR 131:10 54:0 chr20 32436689 d_939 C . PASS END=32440252;SVTYPE=DEL;SVLEN=-3563 TR:VR 35:6 31:0 chr21 33385669 r_319_0 T T]chr21:39858294] . PASS SVTYPE=BND;MATEID=r_319_1 TR:VR 94:8 52:0 chr21 39858294 r_319_1 C C]chr21:33385669] . PASS SVTYPE=BND;MATEID=r_319_0 TR:VR 94:8 52:0 chr7 128380862 d_1352 C . Too_small_size END=128380903;SVTYPE=DEL;SVLEN=-41 TR:VR 31:4 22:0 chr8 62211469 i_1162 G . PASS END=62211469;SVTYPE=INS;SVINSLEN=105;SVINSSEQ=AAAATATCATATATAGACATATATGAGAAGATATCATATATAGACATATATAGGAGATATCATATATAGACATATATGGAGAATATCATATATAGACATATATAA TR:VR 67:4 23:0 chr1 147413614 r_16_0 C [chr17:21652121[C . PASS SVTYPE=BND;MATEID=r_16_1 TR:VR 84:6 66:0 chr17 21652121 r_16_1 C [chr1:147413614[C . PASS SVTYPE=BND;MATEID=r_16_0 TR:VR 84:6 66:0 chr18 147961 r_166_0 C ]chr2:77361014]C . PASS SVTYPE=BND;MATEID=r_166_1 TR:VR 112:63 50:0 chr2 77361014 r_166_1 C C[chr18:147961[ . PASS SVTYPE=BND;MATEID=r_166_0 TR:VR 112:63 50:0 chr19 27356683 i_501 T . Too_low_VAF END=27356683;SVTYPE=INS;SVINSLEN=343;SVINSSEQ=TCCAAACTGCTCAAACAAAAGAAAGGTTCAACTATCAGAAATGAATGGACACAACACAAAGAAGTTTCTCAGAATGCCTCTGTCTACTTTTTATGTGAAAATACTTATTTTTCACCACAGGCCTCAAATGTCTCAGAAATATCCCTTTGCAGATTGTACAAAAAGACTGTTTCCAAACTGCTCAATCAAAAGTAGGTTCAAATCTGTGAGGTGAATGCACTCATCACAAAGAAGTTTCTCAGAAAACTTCTCTTTATTTTTTCTGTGAAGATATTTCCTTTTTCACCACAGGCCTCCAAGTGCTCCAAATATCCATATGCAGATTATACAAAAAGAATGTTTC TR:VR 246:12 90:1 chr2 22214279 r_200 G . PASS END=65129943;SVTYPE=DUP;SVLEN=42915664 TR:VR 108:8 55:0 chr2 56236607 r_240_0 A A[chr21:35098374[ . PASS SVTYPE=BND;MATEID=r_240_1 TR:VR 121:29 57:0 chr21 35098374 r_240_1 G ]chr2:56236607]G . PASS SVTYPE=BND;MATEID=r_240_0 TR:VR 121:29 57:0 chr21 33385905 r_320_0 G [chr21:33396358[T . PASS SVTYPE=BND;MATEID=r_320_1 TR:VR 74:7 36:0 chr21 33396358 r_320_1 T [chr21:33385905[T . PASS SVTYPE=BND;MATEID=r_320_0 TR:VR 74:7 36:0 chr4 88780336 d_1116 C . PASS END=88780386;SVTYPE=DEL;SVLEN=-50 TR:VR 37:11 24:0 chr1 147938247 d_121 C . PASS END=147938624;SVTYPE=DEL;SVLEN=-377 TR:VR 52:10 39:0 chr1 46242954 r_5_0 A A]chr19:36222848] . PASS SVTYPE=BND;MATEID=r_5_1 TR:VR 90:8 60:1 chr19 36222848 r_5_1 T T]chr1:46242954] . PASS SVTYPE=BND;MATEID=r_5_0 TR:VR 90:8 60:1 chr12 16037286 r_111_0 A AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]chr12:109193154] . PASS SVTYPE=BND;MATEID=r_111_1;SVINSLEN=36;SVINSSEQ=AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA TR:VR 77:4 51:1 chr12 109193154 r_111_1 T TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT]chr12:16037286] . PASS SVTYPE=BND;MATEID=r_111_0;SVINSLEN=36;SVINSSEQ=TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT TR:VR 77:4 51:1 chr18 147957 r_167_0 A A[chr2:77361012[ . PASS SVTYPE=BND;MATEID=r_167_1 TR:VR 112:7 50:0 chr2 77361012 r_167_1 G ]chr18:147957]G . PASS SVTYPE=BND;MATEID=r_167_0 TR:VR 112:7 50:0 chr19 27356718 i_502 G . Too_low_VAF END=27356718;SVTYPE=INS;SVINSLEN=171;SVINSSEQ=AGATGAATGCAAATATCACAAAAAAGGATTCTCAGAATGCTTCTGTCTAGTTTTTATGTGAAGGTATTTCCTTTTTCACCATAGTCCTCAAAGTGCTCCAAGTATAGATTTGTAGATTCTACAAAAAGACTCTGTCGAAACTACTCAATCAAAAGAAAGGTTGAACACTGT TR:VR 246:7 90:1 chr2 22225204 r_201_0 C C]chr2:27568702] . PASS SVTYPE=BND;MATEID=r_201_1 TR:VR 75:8 52:0 chr2 27568702 r_201_1 T T]chr2:22225204] . PASS SVTYPE=BND;MATEID=r_201_0 TR:VR 75:8 52:0 chr2 90383033 i_569 C . Too_low_VAF END=90383033;SVTYPE=INS;SVINSLEN=465;SVINSSEQ=AAATGCAATTAAAATGGAATCATCATCGAAAGGAATCACATGGAATCATCATCGAATGGAATCATAGGGAAACATCACAGAATGGAATTGAATGGAATCATCAGTTGGACTCGAATGGAATCATCAAATGTACTCGAAGGGACGTGTCAAATGGACTCGAACGGAATCATCATCGAATGGAATCGAATGGGATCATCGAAAGGACTCGAATCAAATCTTCAAAAGCACTCAAAGGAATCATTGTAGAATGGAAATGAATAGAGTCATCAGACAGCCTCGAATGGAAACATCATTGAATGGAATTGATTGGAAACATCGAATTCACTCGAATGGAATCATCATCTGATGGAATTCAATGGAATCATCGAATGGACACAAATGGAATCATCATCAAATGGAATCCATTGGAACGATCGAATGGAATCGCATGGAATTATCAAATGGAATCGAATGCAATCATCATTG TR:VR 584:5 350:0 chr2 90392709 d_774 T . Too_low_VAF END=90392815;SVTYPE=INS;SVINSLEN=111;SVINSSEQ=AGAATGGAATCGTCATCGAATGGAATCGTATGGAATCATCTAATGAACCGAATGGAATCATCGTCGAATTGAATAGAATGCAATCATCATCGAATGGAATCGAATGGAATT TR:VR 688:3 421:1 chr8 65294421 r_401_0 T T]chr8:81605045] . Too_low_VAF SVTYPE=BND;MATEID=r_401_1 TR:VR 134:3 67:0 chr8 81605045 r_401_1 T T]chr8:65294421] . Too_low_VAF SVTYPE=BND;MATEID=r_401_0 TR:VR 134:3 67:0 chrUn_GL000224v1 1 r_434_0 G [chrUn_GL000224v1:3720[AACGTAGGGAAGGGAAACGTAAAGTTGTGT . Too_low_VAF SVTYPE=BND;MATEID=r_434_1;SVINSLEN=29;SVINSSEQ=AACGTAGGGAAGGGAAACGTAAAGTTGTG TR:VR 621:11 475:0 chrUn_GL000224v1 3720 r_434_1 T [chrUn_GL000224v1:1[CACAACTTTACGTTTCCCTTCCCTACGTTT . Too_low_VAF SVTYPE=BND;MATEID=r_434_0;SVINSLEN=29;SVINSSEQ=CACAACTTTACGTTTCCCTTCCCTACGTT TR:VR 621:11 475:0 chr10 21646747 r_52_0 A ]chr16:48350234]CTGATGTGCTAAA . PASS SVTYPE=BND;MATEID=r_52_1;SVINSLEN=12;SVINSSEQ=CTGATGTGCTAA TR:VR 84:7 64:0 chr16 48350234 r_52_1 A ATTAGCACATCAG[chr10:21646747[ . PASS SVTYPE=BND;MATEID=r_52_0;SVINSLEN=12;SVINSSEQ=TTAGCACATCAG TR:VR 84:7 64:0 chr13 113836196 r_122_0 G ]chr8:143243432]G . Too_low_VAF SVTYPE=BND;MATEID=r_122_1 TR:VR 106:3 69:0 chr8 143243432 r_122_1 G G[chr13:113836196[ . Too_low_VAF SVTYPE=BND;MATEID=r_122_0 TR:VR 106:3 69:0 chr18 1869049 r_169 C . PASS END=5888340;SVTYPE=DEL;SVLEN=-4019291;SVINSLEN=43;SVINSSEQ=AAATATAATTTGTGTTGTAGTATATTATATATTTTGTATTTTA TR:VR 108:6 48:0 chr2 22225245 r_202 T . PASS END=22249859;SVTYPE=DUP;SVLEN=24614 TR:VR 82:5 48:0 chr2 57431916 r_241_0 A A]chr2:57437271] . PASS SVTYPE=BND;MATEID=r_241_1 TR:VR 71:21 33:0 chr2 57437271 r_241_1 T T]chr2:57431916] . PASS SVTYPE=BND;MATEID=r_241_0 TR:VR 71:21 33:0 chr21 33652922 d_973 T . PASS END=33653088;SVTYPE=DEL;SVLEN=-166;SVINSLEN=1;SVINSSEQ=T TR:VR 50:4 21:0 chr7 73867727 r_380_0 T TGG]chr8:49883467] . PASS SVTYPE=BND;MATEID=r_380_1;SVINSLEN=2;SVINSSEQ=GG TR:VR 106:9 70:0 chr8 49883467 r_380_1 G GCC]chr7:73867727] . PASS SVTYPE=BND;MATEID=r_380_0;SVINSLEN=2;SVINSSEQ=CC TR:VR 106:9 70:0 chr8 65483725 i_1164 T . PASS END=65483725;SVTYPE=INS;SVINSLEN=90;SVINSSEQ=TTTTTTTTTTTTTTTTTTTTTTTTAAAGATATTAAAGTCTTTATTTGCCCCCCCCCATTTTTATTTTCAGTAATACAGGGTAAAATGAGT TR:VR 57:6 18:0 chrUn_GL000224v1 1044 r_435 A . Too_low_VAF END=3301;SVTYPE=DUP;SVLEN=2257 TR:VR 647:3 448:1 chr1 157720101 r_17 C . PASS END=158202768;SVTYPE=DEL;SVLEN=-482667 TR:VR 85:11 46:0 chr1 49255603 r_6 G . PASS END=49369222;SVTYPE=DEL;SVLEN=-113619 TR:VR 58:16 49:0 chr18 24870119 r_182_0 A [chr18:24872127[TACTTACTATC . PASS SVTYPE=BND;MATEID=r_182_1;SVINSLEN=10;SVINSSEQ=TACTTACTAT TR:VR 34:6 31:0 chr18 24872127 r_182_1 C [chr18:24870119[ATAGTAAGTAC . PASS SVTYPE=BND;MATEID=r_182_0;SVINSLEN=10;SVINSSEQ=ATAGTAAGTA TR:VR 34:6 31:0 chr2 22241778 r_203 T . Too_low_VAF END=29612693;SVTYPE=DEL;SVLEN=-7370915;SVINSLEN=28;SVINSSEQ=GAAAATTATGAAGAGGAGATCTTATCAA TR:VR 72:3 63:0 chr2 57434026 r_242_0 T [chr2:59468492[T . PASS SVTYPE=BND;MATEID=r_242_1 TR:VR 116:25 48:0 chr2 59468492 r_242_1 T [chr2:57434026[T . PASS SVTYPE=BND;MATEID=r_242_0 TR:VR 116:25 48:0 chr20 26599966 i_679 A . PASS END=26599969;SVTYPE=INS;SVINSLEN=98;SVINSSEQ=GAGTGTTTCAAAACTGCTCTCTCAAAAGACATGTTCAACTCTGAGAGTTGAGGACACACATCACAAAGAAGTTTTGAGAATGCTTCTGTCTAGTTTTT TR:VR 51:6 12:0 chr5 165282 d_1159 C . PASS END=165414;SVTYPE=INS;SVINSLEN=219;SVINSSEQ=GGAGCTCACACTAATGCTCTGACGGGGGCGGAGCTCACACTAATGCTCTGACGGGGCGGAGCTCACACTAATGCTGTGACGGGGCGGGGCTCACAGTAATGCTCTGACGGGGCGGAGCTCACACCAATGCTCTGGGACGGGGTGGGGCTCACAGTACTCCTCTGACGGGGCGGCGCTCACACTAATGCTCTGACGGGGTGGAGCTCACACTAATGCTCT TR:VR 49:4 27:0 chr6 156816988 d_1300 A . PASS END=156819296;SVTYPE=DEL;SVLEN=-2308 TR:VR 54:4 23:0 chr7 134176022 d_1353 T . PASS END=134176194;SVTYPE=DEL;SVLEN=-172 TR:VR 29:9 26:0 chr7 73871647 r_381 T . PASS END=73918092;SVTYPE=DUP;SVLEN=46445 TR:VR 99:7 65:0 chr8 65538287 r_402 C . Too_low_VAF END=83666608;SVTYPE=DEL;SVLEN=-18128321 TR:VR 130:3 56:0 chr1 157733326 r_18 G . PASS END=158136140;SVTYPE=DUP;SVLEN=402814 TR:VR 76:14 53:0 chr12 1762553 r_108 A . PASS END=32988351;SVTYPE=DEL;SVLEN=-31225798 TR:VR 79:9 71:0 chr18 26201690 i_464 C . PASS END=26201690;SVTYPE=INS;SVINSLEN=73;SVINSSEQ=GATGAGAAAATATAAAGGTTTATTACTGGATTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA TR:VR 38:3 27:0 chr19 27368492 i_504 A . PASS END=27368492;SVTYPE=INS;SVINSLEN=516;SVINSSEQ=TTCACAAATATCCCTCTGCAGATACTACAAAAATACTGTTTCCAAACTGCTCCATGAAAGGAAAGGTTCAAATCTGTGAGATGAATGCACACATCACAGAGAAGTTTCTCAGAATGCTTCTCTGTAGTTCTTATGTGTAGATGTTTCCTTTTTCACCATAGGTGTCAAAGCACTCTAAATGTACTTTTGCAGATTCTACAGAAAGACTGTTTCCAAACTGCACAATCGAGAGAAAGATTCAACTCCATGAGATGAATGCACACATCACAAAGTCGTCTTTCAGAATGCTTCCGTCTAGTTTTAATTTGAAGATATTTCCTTTTTCACTGTAGGCCTTAAACTGGTCTCAAAAGTCCCTCTGCAGAGACTATAAAAACACGTTTTTCCAAACTGCTCCATCAAAAGTAAGGTTCAACTCTGTGAGATGAATGCAAACTTCACAAAGAGTTTCTCAGAATCCTTCTGTCTTGTTTTTATGTGACGATATTGTCTTTTTCACCATAAGCCTCAAAGTGC TR:VR 259:19 102:1 chr2 22241820 r_204_0 A [chr2:68367853[T . PASS SVTYPE=BND;MATEID=r_204_1 TR:VR 98:10 56:0 chr2 68367853 r_204_1 T [chr2:22241820[T . PASS SVTYPE=BND;MATEID=r_204_0 TR:VR 98:10 56:0 chr2 58481668 r_243_0 T [chr8:46625887[G . PASS SVTYPE=BND;MATEID=r_243_1 TR:VR 102:6 51:0 chr8 46625887 r_243_1 G [chr2:58481668[G . PASS SVTYPE=BND;MATEID=r_243_0 TR:VR 102:6 51:0 chr20 39617467 i_692 G . Too_small_size END=39617467;SVTYPE=INS;SVINSLEN=47;SVINSSEQ=TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATAT TR:VR 33:3 14:0 chr3 141493892 d_1043 C . Too_small_size END=141493936;SVTYPE=DEL;SVLEN=-44 TR:VR 44:14 23:0 chr3 32436453 r_336_0 A A]chr3:32437306] . PASS SVTYPE=BND;MATEID=r_336_1 TR:VR 37:20 34:0 chr3 32437306 r_336_1 C C]chr3:32436453] . PASS SVTYPE=BND;MATEID=r_336_0 TR:VR 37:20 34:0 chr8 65701203 d_1377 G . PASS END=65707501;SVTYPE=DEL;SVLEN=-6298 TR:VR 81:5 43:0 chrX 11725839 i_1317 T . PASS END=11725839;SVTYPE=INS;SVINSLEN=357;SVINSSEQ=AAAACCTGGGACCCCTAGCATTAGGTATATCTCCCAATGCTATCCCTCCCCCCTCCTCCTACCCCACCACAGTCCCCAGAGTGTGATATTCCCCTTCCTGTGTCCATGTGATCTCATTGTTCAATTCCCACCTATGAGTGAGAATATGCGGTGTTTGGTTTTTTGTTCTTGCGATAGTTTACTGAGAATGATGGTTTCCAATTTCATCCATGTCCCTACAAAGGATATGAACTCATGTGCACATGTACCCTAAAACTTAGAGTATAATAAAAAAAAAAAAAAGAAAAGAAAAAGAAACTTCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA TR:VR 32:6 23:0 chr1 158127461 r_19 T . PASS END=158194127;SVTYPE=DUP;SVLEN=66666 TR:VR 74:13 61:0 chr11 129923458 r_101_0 C C]chr11:131035890] . Too_low_VAF SVTYPE=BND;MATEID=r_101_1 TR:VR 90:4 62:0 chr11 131035890 r_101_1 G G]chr11:129923458] . Too_low_VAF SVTYPE=BND;MATEID=r_101_0 TR:VR 90:4 62:0 chr13 19721251 r_115_0 A ]chr21:38708981]G . PASS SVTYPE=BND;MATEID=r_115_1 TR:VR 55:4 60:0 chr21 38708981 r_115_1 G G[chr13:19721251[ . PASS SVTYPE=BND;MATEID=r_115_0 TR:VR 55:4 60:0 chr2 22249886 r_205_0 A [chr2:53716133[G . PASS SVTYPE=BND;MATEID=r_205_1 TR:VR 75:9 49:0 chr2 53716133 r_205_1 G [chr2:22249886[G . PASS SVTYPE=BND;MATEID=r_205_0 TR:VR 75:9 49:0 chr2 58484758 r_244 T . PASS END=58512165;SVTYPE=DEL;SVLEN=-27407 TR:VR 68:4 39:0 chr21 36385618 r_322_0 G [chr7:75517245[C . PASS SVTYPE=BND;MATEID=r_322_1 TR:VR 131:9 59:0 chr7 75517245 r_322_1 C [chr21:36385618[C . PASS SVTYPE=BND;MATEID=r_322_0 TR:VR 131:9 59:0 chr3 1416889 r_334 T . Too_low_VAF END=2168006;SVTYPE=DUP;SVLEN=751117 TR:VR 153:4 50:0 chr3 32436453 r_337_0 A [chr3:32437311[A . PASS SVTYPE=BND;MATEID=r_337_1 TR:VR 37:21 34:0 chr3 32437311 r_337_1 A [chr3:32436453[A . PASS SVTYPE=BND;MATEID=r_337_0 TR:VR 37:21 34:0 chr7 135719473 r_386_0 C [chr7:135722293[C . PASS SVTYPE=BND;MATEID=r_386_1 TR:VR 38:8 28:0 chr7 135722293 r_386_1 C [chr7:135719473[C . PASS SVTYPE=BND;MATEID=r_386_0 TR:VR 38:8 28:0 chr1 158140484 r_20_0 G ]chr17:34707942]G . PASS SVTYPE=BND;MATEID=r_20_1 TR:VR 90:8 61:0 chr17 34707942 r_20_1 G G[chr1:158140484[ . PASS SVTYPE=BND;MATEID=r_20_0 TR:VR 90:8 61:0 chr1 62020252 d_20 T . Too_small_size END=62020295;SVTYPE=DEL;SVLEN=-43 TR:VR 34:5 28:0 chr13 19727629 r_116_0 A A[chr21:38751878[ . PASS SVTYPE=BND;MATEID=r_116_1 TR:VR 56:6 57:0 chr21 38751878 r_116_1 A ]chr13:19727629]A . PASS SVTYPE=BND;MATEID=r_116_0 TR:VR 56:6 57:0 chr2 22259365 r_206_0 A A]chr2:70776412] . PASS SVTYPE=BND;MATEID=r_206_1 TR:VR 79:5 57:0 chr2 70776412 r_206_1 C C]chr2:22259365] . PASS SVTYPE=BND;MATEID=r_206_0 TR:VR 79:5 57:0 chr21 36947588 r_323_0 T [chr6:43587348[G . Too_low_VAF SVTYPE=BND;MATEID=r_323_1 TR:VR 91:4 59:0 chr6 43587348 r_323_1 G [chr21:36947588[G . Too_low_VAF SVTYPE=BND;MATEID=r_323_0 TR:VR 91:4 59:0 chr5 51010999 r_358 A . PASS END=54397137;SVTYPE=DUP;SVLEN=3386138 TR:VR 67:4 53:0 chr7 135720086 r_387 A . PASS END=135722774;SVTYPE=DEL;SVLEN=-2688 TR:VR 38:8 28:0 chr1 15933125 r_0_0 A A[chr22:44707994[ . PASS SVTYPE=BND;MATEID=r_0_1 TR:VR 73:5 59:0 chr22 44707994 r_0_1 A ]chr1:15933125]A . PASS SVTYPE=BND;MATEID=r_0_0 TR:VR 73:5 59:0 chr1 62080546 r_8_0 G G[chr12:111868635[ . PASS SVTYPE=BND;MATEID=r_8_1 TR:VR 79:10 38:0 chr12 111868635 r_8_1 G ]chr1:62080546]G . PASS SVTYPE=BND;MATEID=r_8_0 TR:VR 79:10 38:0 chr13 20291980 r_117_0 T ]chr21:39615862]C . PASS SVTYPE=BND;MATEID=r_117_1 TR:VR 55:8 48:0 chr21 39615862 r_117_1 C C[chr13:20291980[ . PASS SVTYPE=BND;MATEID=r_117_0 TR:VR 55:8 48:0 chr14_GL000225v1_random 39242 d_407 T . Too_low_VAF END=39937;SVTYPE=DEL;SVLEN=-695;SVINSLEN=216;SVINSSEQ=TACATCACCCGGGTGATCCGTACAGAGATACGTGAGAATTCCCGTGTAGGTGGAACCTAGACAAGTGTTTCATCACCTGGGTGATCAGTGCAGGGTATACGTCACAATGCCCCTGAAGGCAGAGCGTAGACAAGAGTTGCTATCACCTGGGTGATCAGTGCAGAGATATGTCACAAAGGCCCTATAGGCAGAGCCTAGACAAGAGTTACATCACTT TR:VR 501:7 625:1 chr2 100070816 r_272_0 T T]chr20:13457638] . PASS SVTYPE=BND;MATEID=r_272_1 TR:VR 112:7 60:0 chr20 13457638 r_272_1 T T]chr2:100070816] . PASS SVTYPE=BND;MATEID=r_272_0 TR:VR 112:7 60:0 chr2 58512086 i_549 A . PASS END=58512086;SVTYPE=INS;SVINSLEN=3936;SVINSSEQ=AGAAAAGAGAGAAGAATCAAATAGATGCAATAAAAAATGATAAAGGGGATATCACCACCGATCCCACAGAAATACAAACTACCATCAGAGAATACCACAAACACCTCTACGCAAATAAACTACAAAATCTAGAAGAAATGGATAAATTCCTCAACACATACACCCTCCCAAGACTAAACCAGGAAGAAGTTGACTCTCTGAATAGACCAATAACAGGATCTGAAATTGTGGCAATAATCAATAGCTTACCAACCAAAAAGAGTCCAGGACCAGATGGATTCACAGCCGAATTCTACCAGAGGTACAAGGAGGAGCTGGTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCTCCCTAACTCATTTTATGAGGCCAGCATCATCCTGATACCAAAGCCGGGCAGAGACACAACCAAAAAAGAGAATTTTAGACCAATATCTTTGATGAGCATTGATGCAAAAATCCTTAATAAAATACTGGCAAACCGAATCCAGCAGCACATCAAAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAGGCTGGTTGAATATATGCAAATCAATAAATATGATCCAGCATATGAACAGAACCAAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAGGCCTTTGACAAAATTCAACAACCTTTCATGCTAAAAACTCTCAATAAATTAGGTATTGATGGGACGTATCTCAAAATAATAAGAGCTATCTATGACAAACCCACAGCCAATATCATACTGAATGAGCAAAAACTGGAAGCATTCCCTTTGAAAACTGGCAGAAGACAGGGATGCCCTCTCTCACAACTCCTATTCAACATAGTGTTGGAAGTTCTGGCCAGGGCAATTAGGCAGGAGAAAGAAATAAAGGGTATTCGATTAGGAAAAGAGGAAGTCAAATTGTCCCTGTTTGCAGATGACATGATTGTATATCTAGAAAACCCCATTGTCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAAAGTCTCAGGATATAAAATCAATGTACAAAAATCACAAGCATTCTTATACACCAATAACAGACAAACAGAGAGCCAAATCATGAGTGAACTCCTATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCCAACTTTATTTTATTTTTTAAACCTTTATTTTAGGTTGAGGGGTACACATGCACGTTTGTTAAATAGGTAAATTATGTGTTGCAATGGAGGGGTGGTTGGTGTACAAATTATTTCATCACCCAGGTAATGAGCATAGTAACTGATAGGTAGTTTTTCAATTTTCACCCTCCTCTCACCCTCCACCCTCAAGTAGTTCCCGGTGTCTGTTTTTACTCTCTTTGTATTCATATGTACTCAGTGTTTAACTTCCACTTATAAGTGAGAACATGGGGTAATTGGTTTTCTGTCCCCGTCTGTGTTAGTTTGCTTAGGATAATGGCCTCCAGCTGCATCCATGTTGATCCATGTTGCTACAAAGAACATACTTCATTATTTTTATGGTTGCATAGTATTCCATGGTATATATGTACCACATTAGCTTTATACAGCCCATCATTGATGGACATTCAGGTTGATTCCATGCTTTTGCTATTGTGAATAGTGCTGCAATGAACATAGGTGTGCATATGTTTTTATGGTAGAATGATCTATATTCCTTTGGGTATATACCCAATAAGGAGATTGCTGGGTCAAATGGTAATTCTGATTTAAGTTCTTTGAGAAATCACCAAACTGCTTTCCACAGTGGCTGAACTAATTTAACTTCCCACCAACAATGTATAAGCATTCCCTTTTCTGTGTAGCTGCACAAGCATCTGTAGTTTTTTGGCTTTTTAGTAATAGCCGTTGCTGCTGGGCATGGCGGCTCATGCCTGTTATCTCAGCACTTTGGGAGGTCAAGGTGGGCAGATCACTTGAGGTCAGTAGTTGGAGACCAGCCTGCCAATGTGGCAAAACCCCATCTCTACTAAAAATACAAAAATTAGCCAGGTATGGTGGAACACACCTGTAGTCCCAGCAACTTAGGAGGCTGAGGGATGAGAATTGCTTGAACCTGGGAGGTGGAGGTTGCAGTGAGCCGAGATAGCACCACTGCACTCCGGCCTGGGTGACAGAGACTCTGTCTAAAAATAATGATAATAAAATAATAATAATAATAACCATTGTGATGGGTGTGAGATTGTATCTTATTGTAGTTTGATTTGCATTTCTCTAATGATTAGTAATGTTGAACATTTTTTCATATGCTCATTATCCACTTGAATGTCTTCTGTTGAAAAGTATTCATGTTATTTGCCTATTGATTTGTTTGAGCTCATCATAAATTCTGGATATTAGACCTTTGTTGGATGCATAGTTTGCAGATATTTTCTCCCATTCTGTAGGTTCTCTGTTTACTCTGTTGATAGTTTCTTTTGCTGTGCAGAAGCTCCTTAGTTTAACTAGGTCCCATTTATCAAATCTTGCTTTTGTTGAAATTGCTTTTGGTGTTGGGACCCTTTTGAATGGAAGACGTTCAACGTAGAGATGGGGTCTTGCTATGTTGCCCCAGCTTGTCTCATTGTCTCCTGGATGAGGAGAATCCAGGTGGTGCTATAGTGACCATGGTTTACAGAAAAGTGTAATTTACATAGTTAAATGCATTGGTCAAACCTTATCGTAGACTGGGCATGGTGGCTCACACCTATAATCCCAGCACTTTGGGAGGCTCAGGTGAGTGGATTGCTTGAGCCCATGAGTAATCTGCCCTGGATTCATAAGCCCAGCCTAGGCCACATGGTAAAACCCCATCTCTATAAAAATTAGAAAAAAAAAAAAAAAAAGCCAGGCATGGTGGTGTGTGGCTGTAGTCTCAGCTATTCCGGAGGCTGAGGTGAGAGAATTACCTGAGCCAAGGAGGTTGAGGCTGCTGTGAGCCAGGATCACACCACTGCACTGCAGCCTGGGAAATGAGAGTGAGACCTTGTCTCAAAAAAAAAAAAAAAAAGAAAAACCCAAAACAACAACAACAACAACAAGAAAACACAAACTTTATCATAACTCAAATAATAGAAATGATAGAGAAAAGAATGCCCCCAGAATCCAACCATCTTAGCCAGATAACATGTCTTTGTGTGTCTGTGTATGCAGTTTCTACTCTATTCATATCCTTTGCCCAATTTTGTGATATTTTAAATCATGAGTCATTGGTTCTCAACTCTGGCTCATGTGAATCTCTAAGGGAGTTTTTACAAGGCCGGGATGACCATGCTCTACCTTGACCTAGAGAATCAGAATCTCAAGAAACTTCTTAAAATGAATCCCAGGACAACATTCTATTTCTGGAGGCAACATCAGTCACTGTGCAGCAGCTACATTGTGTGAGGTAAATACCCGGGGTTCTTTATCTCACGCCAAGAAAATTTAGTACATGGACACACATGAGGAGTTTAGGAGTGGAGGTTTAATAGGCAAAAGAAAAAGAAATAAAGAGAAAGGAAAATAGCTCTCTCTCTAGTGAGAGATTGGGGACTTCTGAGGAAAAGATTTGCCTGTGGCAGATATGCTGGATTTTATAGACAGGCTTGAGGAGGCGGTGTTTAATTTACACAGGGCTCACAGATTGGCTCAAACAGGTATGACATGGGGGAGCTGGCTGCCCCACCCTAATCTTATTATGCAAATGAACTTTCCCATTGGTGGCACCATCTTGTCTGCTCCTTACTGTACACCTGGCTGACAAAGAGAAGGGAAGATGGAGCCACCATCTTGAACATGATTGGTATAAACTGGCAGCATCATCTGCAGCTTGATTTTACAGGCTGCTCTTTGTTAGAAAGGAAAATAATTTGGGGTTGCCTTTCATTAAAAGGAAAATGTTACCAAAGACTTCCGTACTCTCACTATGTG TR:VR 43:10 26:0 chr20 28746126 r_303_0 T TTCATCTCGCAGAGTGGAAGTTTCTTTTGATTGAGCAGTTTGGAAACAGTCTTTTTGTAGAATCTGCAAAGGGATATATGTAGGTGGTTTGAGGTCTATAGTGAAAATGGAAATATCTTCACATAAAAACTAACTGCTCAATGGGAAGAAATTTTTACTTCTGTGTGATAAATGCAAATGTCACAAAGGAGTTACTCAGAAAACTTCTTTCTGCTTTTAATGTGAAGATATTTCCTTTTTCACCATATGCCTCAATGTGCTCGCAGA[chr21:7994349[ . Too_low_VAF SVTYPE=BND;MATEID=r_303_1;SVINSLEN=266;SVINSSEQ=TCATCTCGCAGAGTGGAAGTTTCTTTTGATTGAGCAGTTTGGAAACAGTCTTTTTGTAGAATCTGCAAAGGGATATATGTAGGTGGTTTGAGGTCTATAGTGAAAATGGAAATATCTTCACATAAAAACTAACTGCTCAATGGGAAGAAATTTTTACTTCTGTGTGATAAATGCAAATGTCACAAAGGAGTTACTCAGAAAACTTCTTTCTGCTTTTAATGTGAAGATATTTCCTTTTTCACCATATGCCTCAATGTGCTCGCAGA TR:VR 128:5 139:1 chr21 7994349 r_303_1 T ]chr20:28746126]TCTGCGAGCACATTGAGGCATATGGTGAAAAAGGAAATATCTTCACATTAAAAGCAGAAAGAAGTTTTCTGAGTAACTCCTTTGTGACATTTGCATTTATCACACAGAAGTAAAAATTTCTTCCCATTGAGCAGTTAGTTTTTATGTGAAGATATTTCCATTTTCACTATAGACCTCAAACCACCTACATATATCCCTTTGCAGATTCTACAAAAAGACTGTTTCCAAACTGCTCAATCAAAAGAAACTTCCACTCTGCGAGATGAT . Too_low_VAF SVTYPE=BND;MATEID=r_303_0;SVINSLEN=266;SVINSSEQ=TCTGCGAGCACATTGAGGCATATGGTGAAAAAGGAAATATCTTCACATTAAAAGCAGAAAGAAGTTTTCTGAGTAACTCCTTTGTGACATTTGCATTTATCACACAGAAGTAAAAATTTCTTCCCATTGAGCAGTTAGTTTTTATGTGAAGATATTTCCATTTTCACTATAGACCTCAAACCACCTACATATATCCCTTTGCAGATTCTACAAAAAGACTGTTTCCAAACTGCTCAATCAAAAGAAACTTCCACTCTGCGAGATGA TR:VR 128:5 139:1 chr21 37045479 r_324_0 C C]chr7:135750650] . PASS SVTYPE=BND;MATEID=r_324_1 TR:VR 59:16 50:0 chr7 135750650 r_324_1 C C]chr21:37045479] . PASS SVTYPE=BND;MATEID=r_324_0 TR:VR 59:16 50:0 chr3 43666771 r_338 A . PASS END=43874311;SVTYPE=DEL;SVLEN=-207540 TR:VR 57:4 44:0 chr5 51011032 r_359_0 A A]chr5:51011287] . PASS SVTYPE=BND;MATEID=r_359_1 TR:VR 35:4 26:0 chr5 51011287 r_359_1 T T]chr5:51011032] . PASS SVTYPE=BND;MATEID=r_359_0 TR:VR 35:4 26:0 chr7 75536118 r_382_0 T T]chr7:76051066] . PASS SVTYPE=BND;MATEID=r_382_1 TR:VR 75:7 71:0 chr7 76051066 r_382_1 G G]chr7:75536118] . PASS SVTYPE=BND;MATEID=r_382_0 TR:VR 75:7 71:0 chr8 66263706 d_1378 G . Too_small_size END=66263744;SVTYPE=DEL;SVLEN=-38 TR:VR 66:10 37:0 chr13 20473680 r_118_0 A [chr13:22013939[A . PASS SVTYPE=BND;MATEID=r_118_1 TR:VR 32:3 54:0 chr13 22013939 r_118_1 A [chr13:20473680[A . PASS SVTYPE=BND;MATEID=r_118_0 TR:VR 32:3 54:0 chr2 100309481 r_273 G . PASS END=100326585;SVTYPE=DEL;SVLEN=-17104 TR:VR 61:7 42:0 chr2 59136195 r_246_0 T ]chr7:79418142]A . PASS SVTYPE=BND;MATEID=r_246_1 TR:VR 65:5 57:0 chr7 79418142 r_246_1 A A[chr2:59136195[ . PASS SVTYPE=BND;MATEID=r_246_0 TR:VR 65:5 57:0 chr21 37918264 r_325_0 C [chr7:73850636[C . PASS SVTYPE=BND;MATEID=r_325_1 TR:VR 61:5 47:0 chr7 73850636 r_325_1 C [chr21:37918264[C . PASS SVTYPE=BND;MATEID=r_325_0 TR:VR 61:5 47:0 chr22 25357873 r_328_0 C ]chr8:102158965]A . PASS SVTYPE=BND;MATEID=r_328_1 TR:VR 130:16 51:0 chr8 102158965 r_328_1 A A[chr22:25357873[ . PASS SVTYPE=BND;MATEID=r_328_0 TR:VR 130:16 51:0 chr3 43830 r_332_0 T [chr3:79720321[T . PASS SVTYPE=BND;MATEID=r_332_1 TR:VR 112:45 49:0 chr3 79720321 r_332_1 T [chr3:43830[T . PASS SVTYPE=BND;MATEID=r_332_0 TR:VR 112:45 49:0 chr5 53622958 r_360_0 C [chr5:56430273[TGGG . PASS SVTYPE=BND;MATEID=r_360_1;SVINSLEN=3;SVINSSEQ=TGG TR:VR 69:5 50:0 chr5 56430273 r_360_1 G [chr5:53622958[CCAG . PASS SVTYPE=BND;MATEID=r_360_0;SVINSLEN=3;SVINSSEQ=CCA TR:VR 69:5 50:0 chr1 16075258 r_1_0 G ]chr22:49802896]C . PASS SVTYPE=BND;MATEID=r_1_1 TR:VR 59:3 61:0 chr22 49802896 r_1_1 C C[chr1:16075258[ . PASS SVTYPE=BND;MATEID=r_1_0 TR:VR 59:3 61:0 chr13 21243053 r_119_0 T T[chr2:153251457[ . Too_low_VAF SVTYPE=BND;MATEID=r_119_1 TR:VR 145:3 150:1 chr2 153251457 r_119_1 T ]chr13:21243053]T . Too_low_VAF SVTYPE=BND;MATEID=r_119_0 TR:VR 145:3 150:1 chr19 27378840 d_678 G . PASS END=27379293;SVTYPE=DEL;SVLEN=-453;SVINSLEN=114;SVINSSEQ=TGGATTATTGTGGAAAAGGTAATATCTTCACATAAAAACTACATAGAAGCGTTCTGAGAAACTTCTTTGTGATGTGTGCATTCATCTCAGAGAGTTGAACCATTTCTTTTCATA TR:VR 215:12 90:0 chr2 100332191 r_274 T . PASS END=104711848;SVTYPE=DEL;SVLEN=-4379657 TR:VR 72:8 48:0 chr2 59197251 r_247_0 C ]chr8:41388034]T . PASS SVTYPE=BND;MATEID=r_247_1 TR:VR 87:23 57:0 chr8 41388034 r_247_1 T T[chr2:59197251[ . PASS SVTYPE=BND;MATEID=r_247_0 TR:VR 87:23 57:0 chr2 91516270 d_823 T . Too_low_VAF END=91516551;SVTYPE=DEL;SVLEN=-281;SVINSLEN=47;SVINSSEQ=GAGTGGATTGGCTAGCTTGGCTGGCCGGCTGGCTTGGCAGGCTGGCT TR:VR 259:4 201:1 chr21 38665701 r_326_0 G [chr7:74980729[A . Too_low_VAF SVTYPE=BND;MATEID=r_326_1 TR:VR 71:3 58:0 chr7 74980729 r_326_1 A [chr21:38665701[A . Too_low_VAF SVTYPE=BND;MATEID=r_326_0 TR:VR 71:3 58:0 chr3 152511365 r_346 G . PASS END=152515292;SVTYPE=DEL;SVLEN=-3927 TR:VR 42:9 26:0 chr7 149922747 r_388_0 C C]chr7:149928592] . PASS SVTYPE=BND;MATEID=r_388_1 TR:VR 41:7 34:0 chr7 149928592 r_388_1 A A]chr7:149922747] . PASS SVTYPE=BND;MATEID=r_388_0 TR:VR 41:7 34:0 chrUn_KI270333v1 79 d_1461 A . Too_low_VAF END=237;SVTYPE=DEL;SVLEN=-158 TR:VR 829:3 738:1 chrX 125563094 i_1334 T . PASS END=125563098;SVTYPE=INS;SVINSLEN=241;SVINSSEQ=CACTGCAAGCCTCCCAGGTTTAAGCGATTCTCCCGCCTCAGCTTCCAGAGTAGTTGGGACTACAGGCACACGCCACCACACCCAGCTAATTTTTTATATGTTTAATAGAGATGGGGTCTCACTATGTTGGCCAGGATGGTCTTGATCTTTTGACCTCGTGATCTGCCCGCCTTGGCCTCCCAAAGTGCTGGGATTACAGGCGTCAGGCACCGCGCCCAGCCAAGGGAGGCTTTTTTAAAAA TR:VR 31:5 38:0 chr1 238468988 d_142 T . PASS END=238469142;SVTYPE=DEL;SVLEN=-154 TR:VR 48:30 36:0 chr18 43840342 r_184_0 G [chr18:43869391[A . PASS SVTYPE=BND;MATEID=r_184_1 TR:VR 58:6 47:0 chr18 43869391 r_184_1 A [chr18:43840342[A . PASS SVTYPE=BND;MATEID=r_184_0 TR:VR 58:6 47:0 chr19 27379541 d_679 G . Too_low_VAF END=27379985;SVTYPE=DEL;SVLEN=-444;SVINSLEN=276;SVINSSEQ=GAATAAGTTCACATAAAAACTATACAGAAGCATTTTGAGAAACATTATTAGGATGTGTGCATTCATCTCACAGAGTTTTACCTATCTTTTGATTGAGCAATTTTGAACCACACTTTGTATAGAATCTGCAAGTGGATATTTTAAGCGCTTTGAGGCCAATCGTGGGAAAGGAAATATTTTCACATAAAAACTACACAGAAGCATTCTGAGAAACTTCTTTGTAATATGTGCATTCATCTCACAGAGTTGAACATTTCTTTTGATTGAGCTGTTTTG TR:VR 218:5 92:0 chr2 5924405 r_193_0 T [chr2:44800584[T . PASS SVTYPE=BND;MATEID=r_193_1 TR:VR 62:8 49:0 chr2 44800584 r_193_1 T [chr2:5924405[T . PASS SVTYPE=BND;MATEID=r_193_0 TR:VR 62:8 49:0 chr22 29120621 i_754 G . PASS END=29120621;SVTYPE=INS;SVINSLEN=147;SVINSSEQ=GAGGAGGAGAGGTGATGATGGGAAACACGGAGGAGGGAGAGGTGATGAAGGAAACAGGGAGGAGGAGGAGGTGATGATGAAACAGGAAAGGAGGAACAGTGACGACGGAAAACGGAGGAAGGAGAGGTGCTGACGGAAACAGAGGAA TR:VR 44:6 28:0 chr3 47453379 i_780 T . PASS END=47453379;SVTYPE=INS;SVINSLEN=55;SVINSSEQ=AAAAAAATTTTTAATGGAACAGTCTGGGCAACATAGTGAGACCCCATCTCTTTAA TR:VR 30:21 30:0 chr7 150051667 r_389 T . PASS END=156123875;SVTYPE=DUP;SVLEN=6072208 TR:VR 62:6 48:0 chrX 125566073 i_1335 C . PASS END=125566082;SVTYPE=INS;SVINSLEN=296;SVINSSEQ=AGGCCAGGTGCAGTGGCTCACACCTGTAATCTCAGCATTTTGAGAGGCCAAGGCAGACGGATCACGAGGTCAGGAGATCGAGACGATCCTGGCTAACATGGTGAAACCCCGTCTCTATTAAAAATACAAAAAATTAGCCGGGCATGGTGGGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCATGAACCCAGAGGCAGAGCTTGCAGTGAGCCAAGATCATATCACTGCACTCCAGGATGGGTGACAGAGTGAGACTCTGTCTCAAAAAAAAAAAAAAAAAT TR:VR 37:6 36:1 chr1 169258250 r_21_0 A ]chr17:21270240]G . PASS SVTYPE=BND;MATEID=r_21_1 TR:VR 80:7 50:0 chr17 21270240 r_21_1 G G[chr1:169258250[ . PASS SVTYPE=BND;MATEID=r_21_0 TR:VR 80:7 50:0 chr10 30011486 r_53_0 T [chr10:35090027[AAGTTAATCCACATATA . PASS SVTYPE=BND;MATEID=r_53_1;SVINSLEN=16;SVINSSEQ=AAGTTAATCCACATAT TR:VR 103:7 44:0 chr10 35090027 r_53_1 A [chr10:30011486[ATATGTGGATTAACTTA . PASS SVTYPE=BND;MATEID=r_53_0;SVINSLEN=16;SVINSSEQ=ATATGTGGATTAACTT TR:VR 103:7 44:0 chr2 59515020 r_248_0 C [chr21:26820554[G . PASS SVTYPE=BND;MATEID=r_248_1 TR:VR 83:12 38:0 chr21 26820554 r_248_1 G [chr2:59515020[G . PASS SVTYPE=BND;MATEID=r_248_0 TR:VR 83:12 38:0 chr20 48450431 i_696 T . PASS END=48450460;SVTYPE=INS;SVINSLEN=425;SVINSSEQ=GGGATTGGATGGGGTGGGATGGGATGGGGTAGGATGGGATGGGATGGGATGGGATGGGATGGGATGGGATGGGATGGGATGGGGTGGGATGGGTTGGGATGGGATGGGGTGGGTTGGGATGGGGTGGGGTGGGATGGGATGGGATGGGATGGGGTGGGGTGGGGGTGGGGTGGGATGGGGTGGGATGGGGTGGGATGGGATGGGATGGGATGGGGTGGGATGGGATGGGGTGGGGTGGGATGGGGTGGGGTGGGGTGGGGTGGGGGTGGGGATGGGATGGGATGGGGTGGTGGGGTGGGGGTGGGATGATGGGATGGGGTGGGGGTGGGGATGATTGGATGGGGGTGGATGGATGGATGGATAGATGATGGATACAATGGATGGGGGAGGGATGATGGAGCATTTAGATGTGTGCAGAGCAAACC TR:VR 57:8 37:1 chr22 29126556 d_1002 T . PASS END=29131184;SVTYPE=DEL;SVLEN=-4628;SVINSLEN=2;SVINSSEQ=GG TR:VR 44:10 32:0 chr3 154576426 i_800 T . PASS END=154576426;SVTYPE=INS;SVINSLEN=368;SVINSSEQ=GACATATTTAAAATTCTTTTTTTTTTTTTTTTTTGTTTTGTTGTTTTTTTTTTTTTTTTTTTATGTGTTTTTTTTTTTTTTTTTTTTTTTTTATTATACTCTAAGTTTTAGGGTACATGTGCACATTGTGCAGGTTAGTTACATATGTATACATGTGCCATGCTGGTGCGCTGCACCCACTAATGTGTCATCTAGCATTAGGTATATCTCCCAATGCTATCCCTCCCCCCTCCCCCGACCCCACCACAGTCCCCAGAGTGTGATATTCCCCTTCCTGTGTCCATGTGATCTCATTGTTCAATTCCCACCTATGAGTGAGAATATGCGGTGTTTGGTTTTTTGTTCTTGCGATAGTTTATTTTCTTTAG TR:VR 49:7 29:0 chr7 150328012 r_390 G . PASS END=152093975;SVTYPE=DEL;SVLEN=-1765963 TR:VR 69:5 45:0 chr7 87415800 r_383 T . PASS END=120148271;SVTYPE=DUP;SVLEN=32732471 TR:VR 49:3 42:0 chrX 54547191 r_437_0 T T]chrX:54547396] . PASS SVTYPE=BND;MATEID=r_437_1 TR:VR 68:17 23:0 chrX 54547396 r_437_1 A A]chrX:54547191] . PASS SVTYPE=BND;MATEID=r_437_0 TR:VR 68:17 23:0 chr1 171116064 r_22_0 G [chr1:195984665[A . PASS SVTYPE=BND;MATEID=r_22_1 TR:VR 110:14 50:0 chr1 195984665 r_22_1 A [chr1:171116064[A . PASS SVTYPE=BND;MATEID=r_22_0 TR:VR 110:14 50:0 chr10 30605544 r_54 T . PASS END=48307637;SVTYPE=DEL;SVLEN=-17702093 TR:VR 102:6 49:0 chr17 11706179 r_150_0 T ]chrUn_KI270744v1:41589]A . PASS SVTYPE=BND;MATEID=r_150_1 TR:VR 58:8 45:0 chrUn_KI270744v1 41589 r_150_1 A A[chr17:11706179[ . PASS SVTYPE=BND;MATEID=r_150_0 TR:VR 58:8 45:0 chr2 10690108 r_194_0 C C]chr2:58481619] . PASS SVTYPE=BND;MATEID=r_194_1 TR:VR 72:11 51:0 chr2 58481619 r_194_1 A A]chr2:10690108] . PASS SVTYPE=BND;MATEID=r_194_0 TR:VR 72:11 51:0 chr2 59568413 r_249_0 T T]chr21:35526548] . PASS SVTYPE=BND;MATEID=r_249_1 TR:VR 139:16 46:0 chr21 35526548 r_249_1 G G]chr2:59568413] . PASS SVTYPE=BND;MATEID=r_249_0 TR:VR 139:16 46:0 chr7 150898605 i_1125 T . PASS END=150898606;SVTYPE=INS;SVINSLEN=818;SVINSSEQ=TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTTTTTTTCTTTCTTTTTTTTTTTTTATTATACTTTAAGTTTTAGGGTACATGTGCACATTGTGCAGGTTAGTTACATATGTATACATGTGCCATGCTGGTGCGCTGCACCCACTAATGTGTCATCTAGCATTAGGTATATCTCCCAATGCTATCCCTCCCCCCTCCTCCTACCCCACCACAGTCCCCAGAGTGTGATATTCCCCTTCCTGTGTCCATGTGATCTCATTGTTCAATTCCCACCTATGAGTGAGAATATGCGGTGTTTGGTTTTTTGTTCTTGCGATAGTTTACTGAGAATGATGGTTTCCAATTTCATCCATGTCCCTACAAAGGATATGAACTCATCATTTTTTATGGCTGCATAGTATTCCATGGTGTATATGTGCCACATTTTCTTAATCCAGTCTATCATTGTTGGACATTTGGGTTGGTTCCAAGTCTTTGCTATTGTGAATAGTGCCGCAATAAACATACGTGTGCATGTGTCTTTATAGCAGCATGATTTATACTCATTTGGGTATATACCCAGTAATGGGATGGCTGGGTCAAATGGTATTTCTAGTTCTAGATCCCTGAGGAATCGCCACACTGACTTCCACAATGGTTGAACTAGTTTACAGTCCCACCAACAGTGTAAAAGTGTTCCTATTTCTCCACATCCTCTCCAGCACCTGTTGTTTCCTGACTTTTTAATGATTGCCATTCTAACTGGTGTGAGATGATATCTCATAGTGGTTTTGATTTGCATTTCTCTGATAGCCAGTG TR:VR 28:4 29:0 chrX 56570930 d_1527 C . PASS END=56571352;SVTYPE=DEL;SVLEN=-422;SVINSLEN=1;SVINSSEQ=C TR:VR 35:4 27:0