##fileformat=VCFv4.3
##fileDate=20230524
##source=nanomonsv-0.5.0
##reference=/projects/jfan_prj/jfan_prj/Nanopore_Testing/2021_nanopore_sv_testing/scratch/depth_testing/POG/COLO829/hg38_no_alt.fa
##contig=<ID=chr1,length=248956422>
##contig=<ID=chr2,length=242193529>
##contig=<ID=chr3,length=198295559>
##contig=<ID=chr4,length=190214555>
##contig=<ID=chr5,length=181538259>
##contig=<ID=chr6,length=170805979>
##contig=<ID=chr7,length=159345973>
##contig=<ID=chr8,length=145138636>
##contig=<ID=chr9,length=138394717>
##contig=<ID=chr10,length=133797422>
##contig=<ID=chr11,length=135086622>
##contig=<ID=chr12,length=133275309>
##contig=<ID=chr13,length=114364328>
##contig=<ID=chr14,length=107043718>
##contig=<ID=chr15,length=101991189>
##contig=<ID=chr16,length=90338345>
##contig=<ID=chr17,length=83257441>
##contig=<ID=chr18,length=80373285>
##contig=<ID=chr19,length=58617616>
##contig=<ID=chr20,length=64444167>
##contig=<ID=chr21,length=46709983>
##contig=<ID=chr22,length=50818468>
##contig=<ID=chrX,length=156040895>
##contig=<ID=chrY,length=57227415>
##contig=<ID=chrM,length=16569>
##contig=<ID=chr1_KI270706v1_random,length=175055>
##contig=<ID=chr1_KI270707v1_random,length=32032>
##contig=<ID=chr1_KI270708v1_random,length=127682>
##contig=<ID=chr1_KI270709v1_random,length=66860>
##contig=<ID=chr1_KI270710v1_random,length=40176>
##contig=<ID=chr1_KI270711v1_random,length=42210>
##contig=<ID=chr1_KI270712v1_random,length=176043>
##contig=<ID=chr1_KI270713v1_random,length=40745>
##contig=<ID=chr1_KI270714v1_random,length=41717>
##contig=<ID=chr2_KI270715v1_random,length=161471>
##contig=<ID=chr2_KI270716v1_random,length=153799>
##contig=<ID=chr3_GL000221v1_random,length=155397>
##contig=<ID=chr4_GL000008v2_random,length=209709>
##contig=<ID=chr5_GL000208v1_random,length=92689>
##contig=<ID=chr9_KI270717v1_random,length=40062>
##contig=<ID=chr9_KI270718v1_random,length=38054>
##contig=<ID=chr9_KI270719v1_random,length=176845>
##contig=<ID=chr9_KI270720v1_random,length=39050>
##contig=<ID=chr11_KI270721v1_random,length=100316>
##contig=<ID=chr14_GL000009v2_random,length=201709>
##contig=<ID=chr14_GL000225v1_random,length=211173>
##contig=<ID=chr14_KI270722v1_random,length=194050>
##contig=<ID=chr14_GL000194v1_random,length=191469>
##contig=<ID=chr14_KI270723v1_random,length=38115>
##contig=<ID=chr14_KI270724v1_random,length=39555>
##contig=<ID=chr14_KI270725v1_random,length=172810>
##contig=<ID=chr14_KI270726v1_random,length=43739>
##contig=<ID=chr15_KI270727v1_random,length=448248>
##contig=<ID=chr16_KI270728v1_random,length=1872759>
##contig=<ID=chr17_GL000205v2_random,length=185591>
##contig=<ID=chr17_KI270729v1_random,length=280839>
##contig=<ID=chr17_KI270730v1_random,length=112551>
##contig=<ID=chr22_KI270731v1_random,length=150754>
##contig=<ID=chr22_KI270732v1_random,length=41543>
##contig=<ID=chr22_KI270733v1_random,length=179772>
##contig=<ID=chr22_KI270734v1_random,length=165050>
##contig=<ID=chr22_KI270735v1_random,length=42811>
##contig=<ID=chr22_KI270736v1_random,length=181920>
##contig=<ID=chr22_KI270737v1_random,length=103838>
##contig=<ID=chr22_KI270738v1_random,length=99375>
##contig=<ID=chr22_KI270739v1_random,length=73985>
##contig=<ID=chrY_KI270740v1_random,length=37240>
##contig=<ID=chrUn_KI270302v1,length=2274>
##contig=<ID=chrUn_KI270304v1,length=2165>
##contig=<ID=chrUn_KI270303v1,length=1942>
##contig=<ID=chrUn_KI270305v1,length=1472>
##contig=<ID=chrUn_KI270322v1,length=21476>
##contig=<ID=chrUn_KI270320v1,length=4416>
##contig=<ID=chrUn_KI270310v1,length=1201>
##contig=<ID=chrUn_KI270316v1,length=1444>
##contig=<ID=chrUn_KI270315v1,length=2276>
##contig=<ID=chrUn_KI270312v1,length=998>
##contig=<ID=chrUn_KI270311v1,length=12399>
##contig=<ID=chrUn_KI270317v1,length=37690>
##contig=<ID=chrUn_KI270412v1,length=1179>
##contig=<ID=chrUn_KI270411v1,length=2646>
##contig=<ID=chrUn_KI270414v1,length=2489>
##contig=<ID=chrUn_KI270419v1,length=1029>
##contig=<ID=chrUn_KI270418v1,length=2145>
##contig=<ID=chrUn_KI270420v1,length=2321>
##contig=<ID=chrUn_KI270424v1,length=2140>
##contig=<ID=chrUn_KI270417v1,length=2043>
##contig=<ID=chrUn_KI270422v1,length=1445>
##contig=<ID=chrUn_KI270423v1,length=981>
##contig=<ID=chrUn_KI270425v1,length=1884>
##contig=<ID=chrUn_KI270429v1,length=1361>
##contig=<ID=chrUn_KI270442v1,length=392061>
##contig=<ID=chrUn_KI270466v1,length=1233>
##contig=<ID=chrUn_KI270465v1,length=1774>
##contig=<ID=chrUn_KI270467v1,length=3920>
##contig=<ID=chrUn_KI270435v1,length=92983>
##contig=<ID=chrUn_KI270438v1,length=112505>
##contig=<ID=chrUn_KI270468v1,length=4055>
##contig=<ID=chrUn_KI270510v1,length=2415>
##contig=<ID=chrUn_KI270509v1,length=2318>
##contig=<ID=chrUn_KI270518v1,length=2186>
##contig=<ID=chrUn_KI270508v1,length=1951>
##contig=<ID=chrUn_KI270516v1,length=1300>
##contig=<ID=chrUn_KI270512v1,length=22689>
##contig=<ID=chrUn_KI270519v1,length=138126>
##contig=<ID=chrUn_KI270522v1,length=5674>
##contig=<ID=chrUn_KI270511v1,length=8127>
##contig=<ID=chrUn_KI270515v1,length=6361>
##contig=<ID=chrUn_KI270507v1,length=5353>
##contig=<ID=chrUn_KI270517v1,length=3253>
##contig=<ID=chrUn_KI270529v1,length=1899>
##contig=<ID=chrUn_KI270528v1,length=2983>
##contig=<ID=chrUn_KI270530v1,length=2168>
##contig=<ID=chrUn_KI270539v1,length=993>
##contig=<ID=chrUn_KI270538v1,length=91309>
##contig=<ID=chrUn_KI270544v1,length=1202>
##contig=<ID=chrUn_KI270548v1,length=1599>
##contig=<ID=chrUn_KI270583v1,length=1400>
##contig=<ID=chrUn_KI270587v1,length=2969>
##contig=<ID=chrUn_KI270580v1,length=1553>
##contig=<ID=chrUn_KI270581v1,length=7046>
##contig=<ID=chrUn_KI270579v1,length=31033>
##contig=<ID=chrUn_KI270589v1,length=44474>
##contig=<ID=chrUn_KI270590v1,length=4685>
##contig=<ID=chrUn_KI270584v1,length=4513>
##contig=<ID=chrUn_KI270582v1,length=6504>
##contig=<ID=chrUn_KI270588v1,length=6158>
##contig=<ID=chrUn_KI270593v1,length=3041>
##contig=<ID=chrUn_KI270591v1,length=5796>
##contig=<ID=chrUn_KI270330v1,length=1652>
##contig=<ID=chrUn_KI270329v1,length=1040>
##contig=<ID=chrUn_KI270334v1,length=1368>
##contig=<ID=chrUn_KI270333v1,length=2699>
##contig=<ID=chrUn_KI270335v1,length=1048>
##contig=<ID=chrUn_KI270338v1,length=1428>
##contig=<ID=chrUn_KI270340v1,length=1428>
##contig=<ID=chrUn_KI270336v1,length=1026>
##contig=<ID=chrUn_KI270337v1,length=1121>
##contig=<ID=chrUn_KI270363v1,length=1803>
##contig=<ID=chrUn_KI270364v1,length=2855>
##contig=<ID=chrUn_KI270362v1,length=3530>
##contig=<ID=chrUn_KI270366v1,length=8320>
##contig=<ID=chrUn_KI270378v1,length=1048>
##contig=<ID=chrUn_KI270379v1,length=1045>
##contig=<ID=chrUn_KI270389v1,length=1298>
##contig=<ID=chrUn_KI270390v1,length=2387>
##contig=<ID=chrUn_KI270387v1,length=1537>
##contig=<ID=chrUn_KI270395v1,length=1143>
##contig=<ID=chrUn_KI270396v1,length=1880>
##contig=<ID=chrUn_KI270388v1,length=1216>
##contig=<ID=chrUn_KI270394v1,length=970>
##contig=<ID=chrUn_KI270386v1,length=1788>
##contig=<ID=chrUn_KI270391v1,length=1484>
##contig=<ID=chrUn_KI270383v1,length=1750>
##contig=<ID=chrUn_KI270393v1,length=1308>
##contig=<ID=chrUn_KI270384v1,length=1658>
##contig=<ID=chrUn_KI270392v1,length=971>
##contig=<ID=chrUn_KI270381v1,length=1930>
##contig=<ID=chrUn_KI270385v1,length=990>
##contig=<ID=chrUn_KI270382v1,length=4215>
##contig=<ID=chrUn_KI270376v1,length=1136>
##contig=<ID=chrUn_KI270374v1,length=2656>
##contig=<ID=chrUn_KI270372v1,length=1650>
##contig=<ID=chrUn_KI270373v1,length=1451>
##contig=<ID=chrUn_KI270375v1,length=2378>
##contig=<ID=chrUn_KI270371v1,length=2805>
##contig=<ID=chrUn_KI270448v1,length=7992>
##contig=<ID=chrUn_KI270521v1,length=7642>
##contig=<ID=chrUn_GL000195v1,length=182896>
##contig=<ID=chrUn_GL000219v1,length=179198>
##contig=<ID=chrUn_GL000220v1,length=161802>
##contig=<ID=chrUn_GL000224v1,length=179693>
##contig=<ID=chrUn_KI270741v1,length=157432>
##contig=<ID=chrUn_GL000226v1,length=15008>
##contig=<ID=chrUn_GL000213v1,length=164239>
##contig=<ID=chrUn_KI270743v1,length=210658>
##contig=<ID=chrUn_KI270744v1,length=168472>
##contig=<ID=chrUn_KI270745v1,length=41891>
##contig=<ID=chrUn_KI270746v1,length=66486>
##contig=<ID=chrUn_KI270747v1,length=198735>
##contig=<ID=chrUn_KI270748v1,length=93321>
##contig=<ID=chrUn_KI270749v1,length=158759>
##contig=<ID=chrUn_KI270750v1,length=148850>
##contig=<ID=chrUn_KI270751v1,length=150742>
##contig=<ID=chrUn_KI270752v1,length=27745>
##contig=<ID=chrUn_KI270753v1,length=62944>
##contig=<ID=chrUn_KI270754v1,length=40191>
##contig=<ID=chrUn_KI270755v1,length=36723>
##contig=<ID=chrUn_KI270756v1,length=79590>
##contig=<ID=chrUn_KI270757v1,length=71251>
##contig=<ID=chrUn_GL000214v1,length=137718>
##contig=<ID=chrUn_KI270742v1,length=186739>
##contig=<ID=chrUn_GL000216v2,length=176608>
##contig=<ID=chrUn_GL000218v1,length=161147>
##contig=<ID=chrEBV,length=171823>
##FILTER=<ID=Duplicate_with_close_SV,Description="When multiple SVs that share breakpoints in close proximity are detected, all but one SVs are filtered.">
##FILTER=<ID=Duplicate_with_insertion,Description="Breakend SVs that are inferred to be the same as any of detected insertions">
##FILTER=<ID=Duplicate_with_close_insertion,Description="When multiple insertions in close proximity are detected, all but one insertions are filtered.">
##FILTER=<ID=SV_with_decoy,Description="SVs involving decoy contigs">
##FILTER=<ID=Too_small_size,Description="Insertions whose size is below the threshould (currently 100bp)">
##FILTER=<ID=Too_low_VAF,Description="SVs whose variant allele frequencies are inferred to be low">
##INFO=<ID=SVTYPE,Number=1,Type=String,Description="Type of structural variant">
##INFO=<ID=SVLEN,Number=1,Type=Integer,Description="Difference in length between REF and ALT alleles">
##INFO=<ID=END,Number=1,Type=Integer,Description="End position of the variant described in this record">
##INFO=<ID=MATEID,Number=1,Type=String,Description="ID of mate breakend">
##INFO=<ID=SVINSLEN,Number=1,Type=Integer,Description="Length of insertion">
##INFO=<ID=SVINSSEQ,Number=1,Type=String,Description="Sequence of insertion">
##ALT=<ID=DEL,Description="Deletion">
##ALT=<ID=INS,Description="Insertion">
##ALT=<ID=DUP,Description="Duplication">
##FORMAT=<ID=TR,Number=1,Type=Integer,Description="The number of reads around the breakpoints">
##FORMAT=<ID=VR,Number=1,Type=Integer,Description="The number of variant supporting reads determined in the validation realignment step">
#CHROM	POS	ID	REF	ALT	QUAL	FILTER	INFO	FORMAT	TUMOR	CONTROL
chr1	62183784	r_9_0	C	C]chr6:32555181]	.	Too_low_VAF	SVTYPE=BND;MATEID=r_9_1	TR:VR	97:4	55:1
chr6	32555181	r_9_1	T	T]chr1:62183784]	.	Too_low_VAF	SVTYPE=BND;MATEID=r_9_0	TR:VR	97:4	55:1
chr11	127930299	d_174	A	<DEL>	.	Too_small_size	END=127930335;SVTYPE=DEL;SVLEN=-36	TR:VR	20:6	27:0
chr20	28516776	r_67_0	G	GAATCTGCAAGTGTTCATTTTGGAGCGCTTTGTTGCCTATGGTGGAAAAAGAAATATCTTCACATAAAATTAGACAGAAGCATTCTCAGAAACTCCTTTGGGATGCGCATGTTCAATTCACAGAGTTCAACTCTGTGATTTGAATGGACACATCCCAGAGGAGTTTCTGAGAATGCTTCTGTCTAGTTTGTATGTGAAGATATCCCGTTTACAACGAATTCCTCAAAGAGCTCCAAATATCCACAAGCAGATCCTACAAAAGCAGTC[chrUn_KI270538v1:54107[	.	Too_low_VAF	SVTYPE=BND;MATEID=r_67_1;SVINSLEN=266;SVINSSEQ=AATCTGCAAGTGTTCATTTTGGAGCGCTTTGTTGCCTATGGTGGAAAAAGAAATATCTTCACATAAAATTAGACAGAAGCATTCTCAGAAACTCCTTTGGGATGCGCATGTTCAATTCACAGAGTTCAACTCTGTGATTTGAATGGACACATCCCAGAGGAGTTTCTGAGAATGCTTCTGTCTAGTTTGTATGTGAAGATATCCCGTTTACAACGAATTCCTCAAAGAGCTCCAAATATCCACAAGCAGATCCTACAAAAGCAGTC	TR:VR	169:5	105:1
chrUn_KI270538v1	54107	r_67_1	T	]chr20:28516776]GACTGCTTTTGTAGGATCTGCTTGTGGATATTTGGAGCTCTTTGAGGAATTCGTTGTAAACGGGATATCTTCACATACAAACTAGACAGAAGCATTCTCAGAAACTCCTCTGGGATGTGTCCATTCAAATCACAGAGTTGAACTCTGTGAATTGAACATGCGCATCCCAAAGGAGTTTCTGAGAATGCTTCTGTCTAATTTTATGTGAAGATATTTCTTTTTCCACCATAGGCAACAAAGCGCTCCAAAATGAACACTTGCAGATTT	.	Too_low_VAF	SVTYPE=BND;MATEID=r_67_0;SVINSLEN=266;SVINSSEQ=GACTGCTTTTGTAGGATCTGCTTGTGGATATTTGGAGCTCTTTGAGGAATTCGTTGTAAACGGGATATCTTCACATACAAACTAGACAGAAGCATTCTCAGAAACTCCTCTGGGATGTGTCCATTCAAATCACAGAGTTGAACTCTGTGAATTGAACATGCGCATCCCAAAGGAGTTTCTGAGAATGCTTCTGTCTAATTTTATGTGAAGATATTTCTTTTTCCACCATAGGCAACAAAGCGCTCCAAAATGAACACTTGCAGATT	TR:VR	169:5	105:1
chr1	109361659	d_9	A	<DEL>	.	PASS	END=109361753;SVTYPE=DEL;SVLEN=-94	TR:VR	30:11	22:0
chr20	28728979	r_68_0	C	]chrY:10933050]ACTGCACTCCAAAC	.	Too_low_VAF	SVTYPE=BND;MATEID=r_68_1;SVINSLEN=13;SVINSSEQ=ACTGCACTCCAAA	TR:VR	138:6	104:0
chrY	10933050	r_68_1	C	CTTTGGAGTGCAGT[chr20:28728979[	.	Too_low_VAF	SVTYPE=BND;MATEID=r_68_0;SVINSLEN=13;SVINSSEQ=TTTGGAGTGCAGT	TR:VR	138:6	104:0
chr1	116994188	d_10	C	<DEL>	.	PASS	END=116994362;SVTYPE=DEL;SVLEN=-174	TR:VR	22:7	16:0
chr17	21842558	d_354	T	<DEL>	.	PASS	END=21843080;SVTYPE=DEL;SVLEN=-522	TR:VR	55:7	41:1
chr4	20049	r_90	T	<DUP>	.	Too_low_VAF	END=190111636;SVTYPE=DUP;SVLEN=190091587	TR:VR	140:4	149:0
chr19	46105148	i_341	T	<INS>	.	Too_small_size	END=46105149;SVTYPE=INS;SVINSLEN=45;SVINSSEQ=TTTTTTGGTTTGTTTGTTTGTTTTTTGTTTGTTTGTTTTGTATTT	TR:VR	14:3	19:0
chr2	228148822	d_482	A	<DEL>	.	PASS	END=228150410;SVTYPE=DEL;SVLEN=-1588;SVINSLEN=1;SVINSSEQ=T	TR:VR	26:11	31:0
chr2	89808179	d_444	G	<DEL>	.	Too_low_VAF	END=89810418;SVTYPE=DEL;SVLEN=-2239;SVINSLEN=160;SVINSSEQ=ACTTGAATGGAATCATCGAATGGTCTTGAATGGAATAATTATCAAACGGAATCAAAAGGAATTATCGAATGGAAACAAATAGAATCTTTGAATGGACTTGAATGGAATCATCGAATGGAACGGAATAGAATAATCAATGAACTCGAATGGAATCATCATT	TR:VR	65:3	37:1
chr2	229934004	d_483	C	<DEL>	.	PASS	END=229934051;SVTYPE=DEL;SVLEN=-47	TR:VR	25:10	26:0
chr3	88973182	r_86_0	G	]chrX:121267978]A	.	PASS	SVTYPE=BND;MATEID=r_86_1	TR:VR	44:4	44:1
chrX	121267978	r_86_1	A	A[chr3:88973182[	.	PASS	SVTYPE=BND;MATEID=r_86_0	TR:VR	44:4	44:1
chr19	54349195	i_346	G	<INS>	.	PASS	END=54349195;SVTYPE=INS;SVINSLEN=92;SVINSSEQ=ATGGAGGACACAGATCCTGAGGATGGATGGATGGAGGACACAGATCCTGAGGGTGGGATGGAGGAGGGAGGACGCAGATCCTGAGGAGTGAA	TR:VR	33:4	18:0
chr3	10685	i_540	C	<INS>	.	Too_low_VAF	END=10685;SVTYPE=INS;SVINSLEN=431;SVINSSEQ=TCCCAACTCCTAACCCCAACTCGCTAACGCTCAACGCCAACCCCCAACCCTAACCCTCCATGAGTAACCTATGCCTCAGTTATAGCCTAGGTGTCATGTGTGCATTAGGAATGCTGCATTTCAGTTCTGGACGCTGCACTTGAACCCTGCAACACAGCCCCTCGCCTTGCCTTGGGAGAATCTCGCATCCAGAGAGGCTTTTCGTTTCCGCCTCCACACTAAACCGTTCTAACTGGTTCCCCAACCTCAACCTCACTTCCCAACAGCCAACGGGAAACCTCAACCTCACCCTCAACCCCAACCCTAACTCCCAACTCCTAACCCCAACCCTAACCCTAACCCTAACCCTAACCTCAACCCCAACTCCGCAACTACCTAGCCCCCTACGCCCTAACCCTGAACCCTAACACAACCCCAACCCTCACCCTCAC	TR:VR	216:5	151:1
chr11	14046540	r_27	A	<DUP>	.	PASS	END=14072489;SVTYPE=DUP;SVLEN=25949	TR:VR	52:3	34:0
chr11	14063851	r_28_0	T	T[chr12:44370667[	.	PASS	SVTYPE=BND;MATEID=r_28_1	TR:VR	52:4	41:0
chr12	44370667	r_28_1	G	]chr11:14063851]G	.	PASS	SVTYPE=BND;MATEID=r_28_0	TR:VR	52:4	41:0
chr18	5128146	r_50_0	A	ATTCGTAA]chr6:32530474]	.	Too_low_VAF	SVTYPE=BND;MATEID=r_50_1;SVINSLEN=7;SVINSSEQ=TTCGTAA	TR:VR	91:4	80:1
chr6	32530474	r_50_1	T	TTTACGAA]chr18:5128146]	.	Too_low_VAF	SVTYPE=BND;MATEID=r_50_0;SVINSLEN=7;SVINSSEQ=TTACGAA	TR:VR	91:4	80:1
chr12	44743090	d_185	A	<DEL>	.	Too_small_size	END=44743130;SVTYPE=DEL;SVLEN=-40	TR:VR	31:5	23:0
chr7	157916870	i_748	C	<INS>	.	PASS	END=157916870;SVTYPE=INS;SVINSLEN=244;SVINSSEQ=CCCCTCCCCAGCTGAAGGTCCCCACCATGGCAGGGGCTGGCCACGCACCCCGGCCACTCCGGGACACGTCCAACACACGTCCCCCTCCCCAGCTGAAGGTCCCCACCATGGCAGGGGGCTGGCCACGCCACCCCGGCCACTCCGGGACACGTCCAATACACGCTCCCCTCCCCAGCTGAAGGTCCCCACCATGGCAGGGGCTGGCCATGCACCCCGGCCACTCCAGGACACGTCCAACACACGT	TR:VR	29:3	13:0
chr12	44744807	d_186	A	<DEL>	.	Too_small_size	END=44744849;SVTYPE=DEL;SVLEN=-42	TR:VR	31:4	23:0
chr18	76394679	d_389	A	<DEL>	.	PASS	END=76394734;SVTYPE=DEL;SVLEN=-55;SVINSLEN=9;SVINSSEQ=GGGCGGGTG	TR:VR	18:4	8:0
chr20	29266412	d_515	A	<DEL>	.	Too_low_VAF	END=29267031;SVTYPE=DEL;SVLEN=-619;SVINSLEN=110;SVINSSEQ=TTTCTTTTTGATGTGTGCATTCAACTCACAGAGTTGAACCTTTCTATTGATTGAACAGTTTTGAAGCACTCTTTTTGTAGAATCTGTAAGTGGATATTTGGAGCGCTTTG	TR:VR	88:3	77:0
chrUn_KI270442v1	57858	i_842	A	<INS>	.	Too_low_VAF	END=57858;SVTYPE=INS;SVINSLEN=250;SVINSSEQ=ATCAAAGGGAATGTAATCGAATGAAATGGAATTGAGTGGAAAGGAATTGAATGGAATGCGCAAAAGTGGAGTGGAGTGTAGTGAAGTGGAACGGAGTGGAAAGGAGGGGGTGGAATGGAAGTGAATGGAGTGGAGTGGAGTGGAATGGAAAGGAATGGAATGGATTCGAAGGGAATGGACTGGAAATGAATGGACTTTGACGGAATGGAAGTGAATTGAATGGAGTGAAATGGAATGGACCCAAATGGCA	TR:VR	88:3	70:1
chr4	49271096	r_91_0	G	]chr9:3784071]G	.	Too_low_VAF	SVTYPE=BND;MATEID=r_91_1	TR:VR	137:4	86:0
chr9	3784071	r_91_1	G	G[chr4:49271096[	.	Too_low_VAF	SVTYPE=BND;MATEID=r_91_0	TR:VR	137:4	86:0
chr14	65102794	d_221	C	<DEL>	.	PASS	END=65102973;SVTYPE=DEL;SVLEN=-179	TR:VR	38:10	20:0
chr3	119868202	d_617	T	<DEL>	.	PASS	END=119868529;SVTYPE=DEL;SVLEN=-327	TR:VR	25:10	11:0
chr19	55946497	d_413	A	<DEL>	.	PASS	END=55946560;SVTYPE=DEL;SVLEN=-63;SVINSLEN=1;SVINSSEQ=A	TR:VR	25:5	9:0
chr8	144946943	i_793	T	<INS>	.	PASS	END=144946943;SVTYPE=INS;SVINSLEN=536;SVINSSEQ=GTCCTGCTGTGGGCCTGTGTCCTGCTGTGGGGCTGTGTCCTTGCTGTGGGGCTGTGTCCTGCTGTGGGCCTGTATCCTGCTGTTGGGCCTGTGTCCTGCTGTTGGGCCTGTGTCCTGCTGTGGGCCTGCAACCCTACTGTGGGCCATACCCTGCTGTGGGCCTGTGTCCTGCCTGTGGGGCCTGTACCCTGCTGTGGGCCATACCCCTCTGTGGGCCTGTACCCTGCTGTGGGCCTGTGTCCTGCTGTGGGCCTCGTATCCTGCTGTTGGGCTTGTGTCCTGCTGTTGGGCTTGTGTCCTGCTGTGGGGCCTGTGTCCTGCTGTGGGGCCTGGTACCCTGCTGTGGGCCTGTACCCTGCTGCGTGGCCTGTATCCTGCTGTGGGCCTGTGTCCTGTTGTGGGGCCTGTGTCCTGCTGTGGGCCTGTATCCTGCTGTTGGGCCTGTATCCTGCTGTTGGGCTTGTGTCCTGCTGTGGGGCCTGTGTCCTGCTGTGGGGCCTGTACCCTGCTGTGGGCCATACCCTTCAGGCTGGTGA	TR:VR	31:3	17:0
chr2	240924508	i_424	A	<INS>	.	PASS	END=240924509;SVTYPE=INS;SVINSLEN=654;SVINSSEQ=ACCCAGTCCCCCACACTAACCCCGGCCCCCACACTAACCCGGCCCCCCACACACTAACCCGGCCCCCACACTAACCCGGCCCCCCACACTAACCCAGTCCCCACACTAACCCAGCCCCCCACACTAACCCGGTCCCCACACTCAACCCAGCCCCCACACTAACCCGGCCCCCCCACACTAACCCAGCTCCCCACACTAACCCAGCCCCCCACACTAACCCGGCCCCCACACTAACCCGGCCCCCCACACCTAACCCAGCCCCCCACACTAACCCGTCCCCCCACACTAACCCAGTCCCCACACTAACCCAGCCCCCCACACCAACCCGGCCCCCACACTAACCCAGCCCCCCACACTAACCCGGCCCCCCACACTAACCCCCGGCCCCCACACACTGCCCCCACCCTAACCCCCACACACTAACCGGCCCCCCACACTGGACCCGGCCCCCACACTAACCCAGCCCCCACACTAACCCAGTCCCCACACTAACCCAGCCCCCACACTAACCCAGTCCCCACACTAACCCGGCCCCCACACCAACCCACGGCCCCCACACTAACCCAACCCCCCCCACACTAATCCGGCCCCCCACACTAACCTGATCCCCCACACTAACCCAGCCCCCACACTAACCCAGCCCCCCACACTAAC	TR:VR	23:4	13:0
chr10	133222750	d_155	T	<DEL>	.	PASS	END=133223155;SVTYPE=DEL;SVLEN=-405;SVINSLEN=118;SVINSSEQ=CCCGGCATGTGTGTGTGTGTGTGTGTGAGAGCCCATCCAGGCATGCTGTTCCCGTGTGTGTGTGTGTGTGTGTGAGAGCCCATCCAGGCATGCTCTTCTCGGCGTGTGTGTGTGTCTG	TR:VR	25:4	10:0
chr12	93378419	r_31	G	<DEL>	.	PASS	END=93394606;SVTYPE=DEL;SVLEN=-16187	TR:VR	31:3	25:0
chr8	26060321	d_794	A	<DEL>	.	Too_small_size	END=26060366;SVTYPE=DEL;SVLEN=-45;SVINSLEN=1;SVINSSEQ=T	TR:VR	12:9	22:0
chr14	85876436	d_224	A	<DEL>	.	PASS	END=85881316;SVTYPE=DEL;SVLEN=-4880	TR:VR	34:12	28:0
chr14	88796195	d_225	T	<DEL>	.	PASS	END=88796263;SVTYPE=DEL;SVLEN=-68;SVINSLEN=25;SVINSSEQ=ATATATTATATATATTATATATATA	TR:VR	27:6	13:0
chr5	45274530	d_693	C	<DEL>	.	PASS	END=45274767;SVTYPE=DEL;SVLEN=-237	TR:VR	30:12	27:0
chr20	64133110	d_553	C	<DEL>	.	PASS	END=64133805;SVTYPE=DEL;SVLEN=-695;SVINSLEN=21;SVINSSEQ=ACCCTCATGTCCTATGAGACC	TR:VR	35:5	12:0
chr4	76608707	i_606	A	<INS>	.	PASS	END=76608708;SVTYPE=INS;SVINSLEN=237;SVINSSEQ=TTGCATAGCATGGCATGGCATGGCATAGCATAGCATTGCATAGCATAGCATAGCATGGCATATGAAGAGCATAGCATGGCATAGCATGGCATAGCATAGCATGGCATGGCATGGCATAGCATAGCATTTGGCATAGCATTAGTACATTGCATAGCATGGCATGGCATAGCATAGCATGGCATAGCACAAGCATAGCATGGCATAGACACGCAGCATAGCATGGCATGGCATAGCAAA	TR:VR	21:3	14:0
chr2	242006941	d_494	G	<INS>	.	PASS	END=242007043;SVTYPE=INS;SVINSLEN=312;SVINSSEQ=CATACAGGGGGAACACACAGTGTGACCGCGTGATTGCCAGTGCACATGGGGGAACACACAGTGTGACCGCGTGATTGCCAGTGCACACGGGGGGAACACACAGTGTGACCGCGTGGATTGCCAGTGCGTACAGGGGAACACACAGTGTGGCTGCGTGATTGCCAGTGCATACAGGGGGAACACACAGTGTGGCTGCGTGATTGCCAGTGCGTGACAGGGGGAACACACAGTGTGACTGCGTGATTGCCAGTGCGTACAGGGGGAACACACAGTGTGACTGCGTGATTGCCAGTGCATACAGGGGGAACACAC	TR:VR	25:7	9:0
chr4	11750924	d_650	T	<DEL>	.	PASS	END=11750992;SVTYPE=DEL;SVLEN=-68	TR:VR	24:12	16:0
chr14_GL000225v1_random	100065	d_284	A	<DEL>	.	Too_low_VAF	END=101125;SVTYPE=DEL;SVLEN=-1060;SVINSLEN=8;SVINSSEQ=TCACTCAG	TR:VR	510:3	335:1
chr17	8208935	r_48	C	<DUP>	.	PASS	END=8300072;SVTYPE=DUP;SVLEN=91137	TR:VR	56:6	35:0
chr2	91477075	d_456	T	<DEL>	.	PASS	END=91477526;SVTYPE=DEL;SVLEN=-451	TR:VR	72:5	52:1
chr1	143497150	i_23	C	<INS>	.	PASS	END=143497150;SVTYPE=INS;SVINSLEN=265;SVINSSEQ=GCCGCGGCTTTTTGCCCCCCGCCGCCTTTTGCAACCCGCCCCTTTTGGCACCCCGCCGCTTTTTGCACCCCGCGGCTTTCTGCCCCCTCGCCGCCGTGGCTTTTTCCCGCCGTGGCTTTTTCCCCCTGCCCCCGGGACTTTTCACCCGCCGCGGCTTTTTGCCCCCCGCCGCTTTTTTGCCCCCCCGCCGCCGCGGCTTTTTTCCCCCGCCGTGGCTTTTCCCCCTGCCCCCGTGGCCTTTTACCCGCCGCAGCTTTTTGCCCAC	TR:VR	68:7	41:1
chrUn_KI270519v1	115561	i_858	A	<INS>	.	PASS	END=115562;SVTYPE=INS;SVINSLEN=438;SVINSSEQ=CCTATTGTGACAAAGGAAATATCTTCACATTCAAAGTATAAAGAAAGTTTCTGAGATACTTCTTTGTGATATGTGTATTCATCTCACAGATTTGAACGTCTCTTTTAATTTAGCCCTTTGGAAACAGTCTTTTTGAAGAATCTGCAAACGGATATATGTGAGCACTTTGAGGCCTATGCAGTGAAAAGAAGTATCTTCACAGAAAAACTATAAAGTAGGTTTCTGAGAAACTGTTTTTTGATGTCTGCATTCATTTCACAGAGGTAAACAATTATTTTCTTTGATCAGTTGGGAAACTCTGTTCTTGTAGGATCTGCTAAGGGACATGTTTGAGTGCCCAGAGCCCTATTGTGAAAAAGATATTGTCTTCACATAAAAACTAGACAGAATTCTACTGAGAAACTGCTTGGTGATGTGCGCATTCATCTCACAGAATTG	TR:VR	78:6	51:1
chr3	186889800	i_568	C	<INS>	.	PASS	END=186889800;SVTYPE=INS;SVINSLEN=66;SVINSSEQ=TTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTCTCTCTCTCTTCTTCTTCTTCTTCTT	TR:VR	40:5	18:0
chr2	26333431	r_58_0	A	]chr4:89723827]AGGAGGGTGGGAAGCAC	.	PASS	SVTYPE=BND;MATEID=r_58_1;SVINSLEN=16;SVINSSEQ=AGGAGGGTGGGAAGCA	TR:VR	45:6	46:0
chr4	89723827	r_58_1	C	CTGCTTCCCACCCTCCT[chr2:26333431[	.	PASS	SVTYPE=BND;MATEID=r_58_0;SVINSLEN=16;SVINSSEQ=TGCTTCCCACCCTCCT	TR:VR	45:6	46:0
chr1	144548977	r_14	T	<DEL>	.	PASS	END=153784833;SVTYPE=DEL;SVLEN=-9235856	TR:VR	82:6	34:0
chr3	192167745	d_629	A	<DEL>	.	Too_small_size	END=192167780;SVTYPE=DEL;SVLEN=-35	TR:VR	39:10	10:0
chr4	93101855	r_93	G	<DEL>	.	PASS	END=93106732;SVTYPE=DEL;SVLEN=-4877	TR:VR	33:7	28:0
chrUn_KI270538v1	81204	i_861	C	<INS>	.	Too_low_VAF	END=81205;SVTYPE=INS;SVINSLEN=344;SVINSSEQ=TGAGAAAGCTTCTGTCTAGTTTTTATTTGAAGGTATTTCCTTTTCCTTCTTAGACCTCAAATCGCTCCAAATATCCGCTTGCAGATACTACAAAAAGACTGTTTCAAAGCTGCTCTCTCAAAAGGAAGGTTCAACTCTGTGAGTTGAATGCACATATTACAAAGCAGTTCCTGAGAATGCTTCTGTCTATTTTTTAGGTGAAGATATCACTTTTTCCAACATAGGCCACAAAGCATTTGAAATGAACACTTGCAGATTCTGCAAAATGTTTGTTTCAACACTGCTGTATCAAAAGAAAGGTTCAACAATGTGAATTGAACACACCCATCACAAAGGAGTTTCTG	TR:VR	116:4	110:0
chr1	146044301	r_15	T	<DEL>	.	PASS	END=148971470;SVTYPE=DEL;SVLEN=-2927169	TR:VR	79:13	38:0
chr4	133339915	r_95_0	A	A]chr4:133352620]	.	PASS	SVTYPE=BND;MATEID=r_95_1	TR:VR	38:3	34:0
chr4	133352620	r_95_1	G	G]chr4:133339915]	.	PASS	SVTYPE=BND;MATEID=r_95_0	TR:VR	38:3	34:0
chr4	93106933	r_94	A	<DEL>	.	PASS	END=93132730;SVTYPE=DEL;SVLEN=-25797	TR:VR	39:7	35:0
chr1_KI270709v1_random	16163	d_416	T	<INS>	.	Too_low_VAF	END=16226;SVTYPE=INS;SVINSLEN=170;SVINSSEQ=CCATTCAATGTTGATTCCTTTTATTCCATTGGATGATGATTCCATTGGAGTCCATTTGATGATGATTCAATTTGAGTCTGTTCAATGATGATTTCATTAGATTTCATTTGATGACTCTATTTTATTCCGTTCGATTATCTGATACCATCTGATTCCATTCAATCATTCCA	TR:VR	539:4	511:0
chr4	133346838	r_96_0	T	[chr4:133357395[ATTGTGA	.	PASS	SVTYPE=BND;MATEID=r_96_1;SVINSLEN=6;SVINSSEQ=ATTGTG	TR:VR	37:4	33:0
chr4	133357395	r_96_1	A	[chr4:133346838[CACAATA	.	PASS	SVTYPE=BND;MATEID=r_96_0;SVINSLEN=6;SVINSSEQ=CACAAT	TR:VR	37:4	33:0
chr13	21243053	r_32_0	T	T[chr2:153251457[	.	PASS	SVTYPE=BND;MATEID=r_32_1	TR:VR	140:7	114:1
chr2	153251457	r_32_1	T	]chr13:21243053]T	.	PASS	SVTYPE=BND;MATEID=r_32_0	TR:VR	140:7	114:1
chr3	195644335	d_631	T	<INS>	.	PASS	END=195644320;SVTYPE=INS;SVINSLEN=78;SVINSSEQ=GTTCTAGATTGAGGGTCGTGCAGCTGCAGACCCGGGAGGAGCTGATGTTCTAGATTGAGGGTCGTGCAGCTGCAGACC	TR:VR	59:4	19:0
chr7	36254055	d_765	A	<DEL>	.	Too_small_size	END=36254090;SVTYPE=DEL;SVLEN=-35	TR:VR	30:8	22:0
chrUn_KI270750v1	94788	d_868	T	<DEL>	.	PASS	END=102237;SVTYPE=DEL;SVLEN=-7449	TR:VR	57:3	46:0
chr11	62620301	d_172	G	<DEL>	.	PASS	END=62623410;SVTYPE=DEL;SVLEN=-3109;SVINSLEN=1;SVINSSEQ=T	TR:VR	20:6	30:0
chr19	24369242	d_407	T	<DEL>	.	PASS	END=24369457;SVTYPE=DEL;SVLEN=-215;SVINSLEN=112;SVINSSEQ=TGCAACACTGTTTTTTTAGTATCTGACAAGGAATATTTGGGAGGGCTTTGAAGCCTACGTTGAAAAGGAAATATCTTCAGATAAAAACTATATAGAAGCTTTCTGGGAAACT	TR:VR	66:5	43:1
chr4	150658758	i_610	T	<INS>	.	PASS	END=150658758;SVTYPE=INS;SVINSLEN=398;SVINSSEQ=CTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCTCTCTCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCTCCC	TR:VR	38:12	22:0
chr16	79012948	r_46	T	<DEL>	.	PASS	END=79091283;SVTYPE=DEL;SVLEN=-78335	TR:VR	45:9	44:0
chr19	24369324	i_332	A	<INS>	.	PASS	END=24369324;SVTYPE=INS;SVINSLEN=234;SVINSSEQ=TAAAAACTAAAAAGAAACTTTCCCAGAATCTGTTTTGTGTTGCTTGCATTCTTCTCACAGAGTTAAACCTTTCTTTTCATTGAGCAGTTATGAAACACTGTTTTTATAGACTCTGTGGAGGGATATATGGGAGCACATTGAGGTTTATGGTGAAAAAGGAAATATCTTCAGATAAATACTATATAAAGTTTTCTGAGAAACAGCTTTGTGATCTGTGAATTTATCTCGTGGAGT	TR:VR	66:4	41:1
chr22	18213370	i_522	A	<INS>	.	Too_small_size	END=18213370;SVTYPE=INS;SVINSLEN=48;SVINSSEQ=TATAGATTTATTTATTATTTATTTATAGTAATATAGATTTATTTATTT	TR:VR	16:4	10:0
chr4	160237226	d_674	A	<DEL>	.	PASS	END=160237341;SVTYPE=DEL;SVLEN=-115	TR:VR	31:7	19:0
chr16	83500150	r_47	G	<DEL>	.	PASS	END=83504886;SVTYPE=DEL;SVLEN=-4736	TR:VR	24:8	23:0
chr19	24394987	r_53_0	A	[chr19:24403126[CTTCTGTGTAGTTTTTATCTGAAGATATTCCTTTTCCACAAAAGGCAACAAAGGTCTCCAAATATCCCCTTGCAGATTCTACAAACAGAGTGTTTCCAAACTCCACAGTCAAAAGAAAAATTAAACTCTGC	.	Too_low_VAF	SVTYPE=BND;MATEID=r_53_1;SVINSLEN=130;SVINSSEQ=CTTCTGTGTAGTTTTTATCTGAAGATATTCCTTTTCCACAAAAGGCAACAAAGGTCTCCAAATATCCCCTTGCAGATTCTACAAACAGAGTGTTTCCAAACTCCACAGTCAAAAGAAAAATTAAACTCTG	TR:VR	97:4	82:0
chr19	24403126	r_53_1	C	[chr19:24394987[CAGAGTTTAATTTTTCTTTTGACTGTGGAGTTTGGAAACACTCTGTTTGTAGAATCTGCAAGGGGATATTTGGAGACCTTTGTTGCCTTTTGTGGAAAAGGAATATCTTCAGATAAAAACTACACAGAAGC	.	Too_low_VAF	SVTYPE=BND;MATEID=r_53_0;SVINSLEN=130;SVINSSEQ=CAGAGTTTAATTTTTCTTTTGACTGTGGAGTTTGGAAACACTCTGTTTGTAGAATCTGCAAGGGGATATTTGGAGACCTTTGTTGCCTTTTGTGGAAAAGGAATATCTTCAGATAAAAACTACACAGAAG	TR:VR	97:4	82:0
chr2	38010854	r_62_0	A	A]chr20:29386064]	.	Too_low_VAF	SVTYPE=BND;MATEID=r_62_1	TR:VR	81:3	46:0
chr20	29386064	r_62_1	T	T]chr2:38010854]	.	Too_low_VAF	SVTYPE=BND;MATEID=r_62_0	TR:VR	81:3	46:0
chr3	195727081	r_87	T	<DEL>	.	Too_low_VAF	END=195746140;SVTYPE=DEL;SVLEN=-19059;SVINSLEN=3;SVINSSEQ=CTG	TR:VR	86:3	69:1
chr15	34412578	r_41	T	<DEL>	.	PASS	END=34560837;SVTYPE=DEL;SVLEN=-148259	TR:VR	48:5	21:0
chr21	41855952	r_83_0	C	[chr22:46469965[A	.	PASS	SVTYPE=BND;MATEID=r_83_1	TR:VR	64:7	77:0
chr22	46469965	r_83_1	A	[chr21:41855952[A	.	PASS	SVTYPE=BND;MATEID=r_83_0	TR:VR	64:7	77:0
chr3	195746512	r_88	T	<DEL>	.	PASS	END=195749161;SVTYPE=DEL;SVLEN=-2649;SVINSLEN=29;SVINSSEQ=TAATTATAATTATTAAATAATTAAATAAT	TR:VR	58:3	48:1
chr1	162150105	d_96	C	<DEL>	.	PASS	END=162150182;SVTYPE=DEL;SVLEN=-77	TR:VR	47:3	17:0
chr20	34807806	r_70_0	T	[chr20:34808468[C	.	PASS	SVTYPE=BND;MATEID=r_70_1	TR:VR	32:9	19:0
chr20	34808468	r_70_1	C	[chr20:34807806[C	.	PASS	SVTYPE=BND;MATEID=r_70_0	TR:VR	32:9	19:0
chr7	57887487	r_105_0	T	]chrUn_KI270442v1:173357]TGCCCTATGGTGGAAACGGAAACATCTTCAAATTAATACTACACAGAAGCATTCAGAGAAACTTCTTTGTGATGAGTGCATTCATCACACAGAGTTGAACCTTTCTTTTGATTGAGCAGTTTTGAAACACTCTCTTTGTGATATGAAGATATTTCCATTTCTACCATAGGCCACAAAGTATTCAAAATGTCCACCTGCAGATTCTACAAAAAGAGTGTTTCCGAACTCCTCAATCAAAAGAAAGGTTCAACTCTGTGAGATGAACGCAAACGG	.	Too_low_VAF	SVTYPE=BND;MATEID=r_105_1;SVINSLEN=272;SVINSSEQ=TGCCCTATGGTGGAAACGGAAACATCTTCAAATTAATACTACACAGAAGCATTCAGAGAAACTTCTTTGTGATGAGTGCATTCATCACACAGAGTTGAACCTTTCTTTTGATTGAGCAGTTTTGAAACACTCTCTTTGTGATATGAAGATATTTCCATTTCTACCATAGGCCACAAAGTATTCAAAATGTCCACCTGCAGATTCTACAAAAAGAGTGTTTCCGAACTCCTCAATCAAAAGAAAGGTTCAACTCTGTGAGATGAACGCAAACG	TR:VR	185:4	96:0
chrUn_KI270442v1	173357	r_105_1	G	GCGTTTGCGTTCATCTCACAGAGTTGAACCTTTCTTTTGATTGAGGAGTTCGGAAACACTCTTTTTGTAGAATCTGCAGGTGGACATTTTGAATACTTTGTGGCCTATGGTAGAAATGGAAATATCTTCATATCACAAAGAGAGTGTTTCAAAACTGCTCAATCAAAAGAAAGGTTCAACTCTGTGTGATGAATGCACTCATCACAAAGAAGTTTCTCTGAATGCTTCTGTGTAGTATTAATTTGAAGATGTTTCCGTTTCCACCATAGGGCA[chr7:57887487[	.	Too_low_VAF	SVTYPE=BND;MATEID=r_105_0;SVINSLEN=272;SVINSSEQ=CGTTTGCGTTCATCTCACAGAGTTGAACCTTTCTTTTGATTGAGGAGTTCGGAAACACTCTTTTTGTAGAATCTGCAGGTGGACATTTTGAATACTTTGTGGCCTATGGTAGAAATGGAAATATCTTCATATCACAAAGAGAGTGTTTCAAAACTGCTCAATCAAAAGAAAGGTTCAACTCTGTGTGATGAATGCACTCATCACAAAGAAGTTTCTCTGAATGCTTCTGTGTAGTATTAATTTGAAGATGTTTCCGTTTCCACCATAGGGCA	TR:VR	185:4	96:0
chr2	91521855	d_469	C	<DEL>	.	Too_low_VAF	END=91521937;SVTYPE=DEL;SVLEN=-82	TR:VR	138:3	54:1
chr20	34882860	r_71	A	<DUP>	.	PASS	END=35131881;SVTYPE=DUP;SVLEN=249021	TR:VR	113:10	28:0
chr19	2621265	d_397	T	<DEL>	.	PASS	END=2622261;SVTYPE=DEL;SVLEN=-996	TR:VR	19:6	19:0
chr20	35027321	r_72	C	<DUP>	.	PASS	END=35040148;SVTYPE=DUP;SVLEN=12827	TR:VR	82:5	23:0
chr13	59217630	d_208	G	<DEL>	.	PASS	END=59217758;SVTYPE=DEL;SVLEN=-128;SVINSLEN=1;SVINSSEQ=G	TR:VR	24:6	16:0
chr20	35028072	r_73	C	<DEL>	.	Too_low_VAF	END=35962699;SVTYPE=DEL;SVLEN=-934627	TR:VR	131:4	27:0
chr6	59530230	i_708	A	<INS>	.	Too_low_VAF	END=59530232;SVTYPE=INS;SVINSLEN=349;SVINSSEQ=TAGAGCAGTTTGGAAACATTGTTTCTGTAGAATCAGCTTGTTTGTATTTGGACCTCTTTGAGGCCTTCGTTGGAAACGGGTTTTCATCTTATAAACCCAGACAGAAGAATTCTCAGAGTCTTCTTTGTGATGTGTGCTTTCAACTCACCGAGATAAAGATTTCTCTTGATAGAGCAATTTGGAAACACTCTTTTTGTAGAATTTGCAAGGGTACCGTAGAGCGCTTTCAGGCCTATGGTAGAAAAGGGAATATCTTTCCATAAAAGGTAGACAGAAGCAATCTCAGAAACTACTTTGTGATGTGTGCATTCAACTCACAAAGAGACTCTGAGAACATTCCTCTTGATAG	TR:VR	352:4	187:0
chr1	171921355	d_98	G	<DEL>	.	PASS	END=171921441;SVTYPE=DEL;SVLEN=-86;SVINSLEN=3;SVINSSEQ=TTT	TR:VR	60:33	25:0
chr2	94219338	d_472	T	<INS>	.	PASS	END=94219402;SVTYPE=INS;SVINSLEN=127;SVINSSEQ=TTGAGATGAAATGGTGAGTAGAAATGAGATGAAATGATGAGACGAAATGACAAAATTGAAAAGAAATTGAAAGGAGATGAGATGAGATAAAATGAGATGAAATGATGAGATGATGGATGAAATGATG	TR:VR	68:6	47:0
chr20	35760665	r_74_0	T	[chrX:152736337[C	.	PASS	SVTYPE=BND;MATEID=r_74_1	TR:VR	54:8	36:0
chrX	152736337	r_74_1	C	[chr20:35760665[C	.	PASS	SVTYPE=BND;MATEID=r_74_0	TR:VR	54:8	36:0
chr1	171921396	d_99	A	<DEL>	.	PASS	END=171921448;SVTYPE=DEL;SVLEN=-52	TR:VR	60:33	25:0
chr20	36044707	r_75_0	C	C]chr20:36048403]	.	PASS	SVTYPE=BND;MATEID=r_75_1	TR:VR	49:4	18:0
chr20	36048403	r_75_1	A	A]chr20:36044707]	.	PASS	SVTYPE=BND;MATEID=r_75_0	TR:VR	49:4	18:0
chr1	174926127	d_100	C	<DEL>	.	PASS	END=174926390;SVTYPE=DEL;SVLEN=-263	TR:VR	39:3	22:0
chr1	260784	r_0_0	T	[chr5:181477720[A	.	Too_low_VAF	SVTYPE=BND;MATEID=r_0_1	TR:VR	138:3	89:0
chr5	181477720	r_0_1	A	[chr1:260784[A	.	Too_low_VAF	SVTYPE=BND;MATEID=r_0_0	TR:VR	138:3	89:0
chr12	127166133	i_145	C	<INS>	.	Too_small_size	END=127166133;SVTYPE=INS;SVINSLEN=46;SVINSSEQ=GGGGCACGCCATCCGCCCTCCGACCGCGCGCGGGGCGCGTGGAGGG	TR:VR	36:5	18:0
chr13	63028414	r_34_0	A	[chrUn_KI270442v1:38139[G	.	Too_low_VAF	SVTYPE=BND;MATEID=r_34_1	TR:VR	90:4	75:0
chrUn_KI270442v1	38139	r_34_1	G	[chr13:63028414[G	.	Too_low_VAF	SVTYPE=BND;MATEID=r_34_0	TR:VR	90:4	75:0
chr15	85897298	i_217	C	<INS>	.	PASS	END=85897298;SVTYPE=INS;SVINSLEN=625;SVINSSEQ=CCCCCACGCCACCGTGTGTGTGTGTCTCTCTCCCGCCCCACGCCCCCGTGTGTGTGTCTCTCTCTCCCCCCCGCCCCCGTGTGTGTCTCTCTCTCTCCCCCCACGCCCCCATGTGTGTGTGTGTCTCTCTCCCCCACGCCCCCGTGTGTGTGTGTCTCTCTCCCCCCACGCCCCGTGTGTGTGTGTGTCTCTCTCCCCCCACGCCCCCATGTGTGTGTGTCTCTCTCTCCCCCCACGCCTCCGTGTGTGTGTGTCTCTCTCTCGCCCCACGCCCCCATGTGTGTGTCTCTCTCCCCCCACGCCCCCGTGTGTGTGTCTCTCTCTCCCCCGCCCCCATGTGTGTGTGTCTCTCCCTCCCCCCACGCCCCCGTGTGTGTGTCTCTCTCTCCCCACGCCTCCGTGTGTGTGTGTCTGTCTCTCTCCCCACGCCTCCATGTGTGTGTGTGTCTCTCCCCACGCCTCCGTGTGTGTGTCTCTCTCTCCCCACGCCTCCGTGTGTGTGTGTCTCTCTCTCCCCACGCCTCCGTGTGTGTGTGTGTGTCTCTCCCCACGCCCCCGTGTGTGTGTGTCTCTCCCCACGCCTCCGTGTGTGTCTCTCTCTCCCCACGCCTCCGTGTGTGTGTGT	TR:VR	57:4	46:1
chr19	28804869	d_409	G	<DEL>	.	PASS	END=28804920;SVTYPE=DEL;SVLEN=-51;SVINSLEN=17;SVINSSEQ=TGTATATGTATATGTAT	TR:VR	35:3	22:0
chr22	49029646	r_84_0	A	[chr4:185239775[T	.	PASS	SVTYPE=BND;MATEID=r_84_1	TR:VR	40:3	40:0
chr4	185239775	r_84_1	T	[chr22:49029646[T	.	PASS	SVTYPE=BND;MATEID=r_84_0	TR:VR	40:3	40:0
chr1	178618836	i_38	A	<INS>	.	PASS	END=178618836;SVTYPE=INS;SVINSLEN=63;SVINSSEQ=GAGAGAGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGG	TR:VR	41:4	17:0
chr13	73208925	i_165	A	<INS>	.	PASS	END=73208925;SVTYPE=INS;SVINSLEN=132;SVINSSEQ=ATATATATATAGAATATATATAGAATATATATAGAATATATATATAGAATATATATAGAATATATATAGAATATATATATAGAATATATATAGAATATATATAGAATATATATATAGAATATATATAGAATA	TR:VR	29:5	23:0
chr16_KI270728v1_random	330202	i_240	C	<INS>	.	PASS	END=330202;SVTYPE=INS;SVINSLEN=315;SVINSSEQ=CCAAATATACATTCACAGAAATGGACAAAAACAGTGTTTACAAGTTTTTGCATGTAAAGAGAGGTGTAACTGTGTGAGCGGAATGTATACATAACAAAGCAGTTTCTCAGAAAGCTTCTTTATAGTTTTTATCTGAAGATATTTCTTTTTCACCATAGTCCTCAATGCCCTCCTAAAAGTCCCTTTGCAGATTCTAAAATATACTGTTTCAAAACTGCTCACTGAAAAGAAAGGTTTAACTCTGAGGGATGAATGCACATATCACAAAGTGGTTTCTAGATAGTTTCCTTCTAGTTTTTATCCTGGGATATTTGC	TR:VR	5:3	7:0
chr20	36166713	r_78_0	T	]chr8:15444501]GG	.	PASS	SVTYPE=BND;MATEID=r_78_1;SVINSLEN=1;SVINSSEQ=G	TR:VR	51:4	44:0
chr8	15444501	r_78_1	G	GC[chr20:36166713[	.	PASS	SVTYPE=BND;MATEID=r_78_0;SVINSLEN=1;SVINSSEQ=C	TR:VR	51:4	44:0
chr10	57839627	r_23_0	T	T]chr4:86996746]	.	Too_low_VAF	SVTYPE=BND;MATEID=r_23_1	TR:VR	62:3	46:0
chr4	86996746	r_23_1	A	A]chr10:57839627]	.	Too_low_VAF	SVTYPE=BND;MATEID=r_23_0	TR:VR	62:3	46:0
chr16_KI270728v1_random	334479	i_241	A	<INS>	.	PASS	END=334479;SVTYPE=INS;SVINSLEN=151;SVINSSEQ=AAGAAAGGTAAAGTCTGTGAGATGAATGCACGCGTCACAAAGCAGTTTATCAGAAAGCTTCTTTCTAGTTTTTATGTGAAGATGATTTCTGTTTCACCATAGGCCTCAAAGCGCTCCCAAATATCCCTTTGCAGATAACTGCTGATTGAAA	TR:VR	4:3	4:0
chr20	36167354	r_79_0	T	[chr8:35922619[C	.	PASS	SVTYPE=BND;MATEID=r_79_1	TR:VR	50:11	40:0
chr8	35922619	r_79_1	C	[chr20:36167354[C	.	PASS	SVTYPE=BND;MATEID=r_79_0	TR:VR	50:11	40:0
chr22	50029430	i_528	C	<INS>	.	PASS	END=50029430;SVTYPE=INS;SVINSLEN=803;SVINSSEQ=CATCACACCATCCTGAAGACCCCCACACACACCCTCGTAAAGACCCCATCACACCGTCCTGAAGGGCCCCACACACACTCGTAAAGACCCCATCACACCATCCTGAAGACCCCACACACCCTCGTAAAGACCCCATCACACCGTCCTGAAGACCCCACACACCCTCGTAAAGACCCCATCACACCGTCCTGAAGACCCCCACACACTCGTAGGAAGACCCCATCACACCATCCTGAAGACCCCACACACCCTCGTAAAGACCCCCATCACACCGTCCTGAAGACCCCACACACTTTCGTAAAGACCCCATCACACCGTCCTGAAGACCCCCACACCCTCGTAAAGACCCCATCACACCATCCTGAAGACCCCCCACACCCTCGTAAAGACCCCATCACACCGTCCTGAAGACCCCACACACCCTCGTAAAGACCCCATCACACCGTCCTGAAGAGCCCCACACACCCTCGTAAAGACCCCATCACACCGTCCTGAAGACCCCACACACCCTCGTAAAGACCCCATCACACCGTCCTCTGGAAGACCCCACACACCCTCGTAAAGACCCCATCACACCGTCCTGAAGACCCCACACACCCTCGTAAAGACCCCATCACACCGTCCTGAAGACCCCACACACACCTCGTAAAGACCCCATCACACCATCCTGAAGACCCCCACACACCCTCGTAAAGACCCCATCACACCGTCCTGAGAGACCCCCCCCCCCCCCCACACACCCCCTCGTAAAGACCCCATCACACCGTCCTGAAGACCCCACACACACACTCGTAGAAGCCATC	TR:VR	22:4	11:0
chr14_GL000225v1_random	44269	r_36	C	<DUP>	.	Too_low_VAF	END=53356;SVTYPE=DUP;SVLEN=9087;SVINSLEN=2;SVINSSEQ=AG	TR:VR	522:6	463:0
chr1	36192367	r_1_0	T	[chr1:36193025[C	.	PASS	SVTYPE=BND;MATEID=r_1_1	TR:VR	33:16	15:0
chr1	36193025	r_1_1	C	[chr1:36192367[C	.	PASS	SVTYPE=BND;MATEID=r_1_0	TR:VR	33:16	15:0
chr10	89597786	r_24_0	T	[chr19:29897881[AT	.	Too_low_VAF	SVTYPE=BND;MATEID=r_24_1;SVINSLEN=1;SVINSSEQ=A	TR:VR	68:3	37:1
chr19	29897881	r_24_1	T	[chr10:89597786[TT	.	Too_low_VAF	SVTYPE=BND;MATEID=r_24_0;SVINSLEN=1;SVINSSEQ=T	TR:VR	68:3	37:1
chr1	44929681	r_3_0	G	G]chr1:48406816]	.	PASS	SVTYPE=BND;MATEID=r_3_1	TR:VR	58:6	47:0
chr1	48406816	r_3_1	A	A]chr1:44929681]	.	PASS	SVTYPE=BND;MATEID=r_3_0	TR:VR	58:6	47:0
chr10	89597791	r_25_0	A	AGAGGCAGG]chr19:29902190]	.	PASS	SVTYPE=BND;MATEID=r_25_1;SVINSLEN=8;SVINSSEQ=GAGGCAGG	TR:VR	65:5	34:0
chr19	29902190	r_25_1	T	TCCTGCCTC]chr10:89597791]	.	PASS	SVTYPE=BND;MATEID=r_25_0;SVINSLEN=8;SVINSSEQ=CCTGCCTC	TR:VR	65:5	34:0
chr4	188904885	i_623	A	<INS>	.	PASS	END=188904885;SVTYPE=INS;SVINSLEN=108;SVINSSEQ=CTGGGGGACACTCTGGGCTTGGGACACTCCTGGGACCTGGGGACCCTCAGGTTGTGGCCAGGGACGCTCTGGTCTGCGGGACGCTCTGGACTGGGGGACACTCTGGGC	TR:VR	24:4	14:0
chr1	45901535	r_4_0	A	[chr1:48416414[C	.	PASS	SVTYPE=BND;MATEID=r_4_1	TR:VR	49:7	35:0
chr1	48416414	r_4_1	C	[chr1:45901535[C	.	PASS	SVTYPE=BND;MATEID=r_4_0	TR:VR	49:7	35:0
chr10	9295452	i_82	A	<INS>	.	PASS	END=9295452;SVTYPE=INS;SVINSLEN=79;SVINSSEQ=TGGTGTCTACACTGCGCATATCCTAAATAACACCCCCTCCCTTGTTCTTCCCTTTCCCTTTCTTTTGGTTATCAATCGT	TR:VR	27:12	7:0
chr17	1117574	i_249	C	<INS>	.	PASS	END=1117574;SVTYPE=INS;SVINSLEN=172;SVINSSEQ=TGAGTCCTCCCAGCGTTATCCCTGAGCCTGAGTTCCTCCCAGCGTTATCCCTGAGCCTGAGTCCTTCCCAGCTTTATCCCTGAGCCTGAGTTCTCCCCAGCGTTATCCCTGAGCCTGAGTTCTCCCCAGCGTTAACCCTGAGCCTGAGTTCTTCCCAGCGTTAACCCTGCTC	TR:VR	27:7	12:0
chr1	48433742	r_5_0	A	A]chr1:54304027]	.	PASS	SVTYPE=BND;MATEID=r_5_1	TR:VR	64:11	32:0
chr1	54304027	r_5_1	C	C]chr1:48433742]	.	PASS	SVTYPE=BND;MATEID=r_5_0	TR:VR	64:11	32:0
chr16	29418772	d_303	C	<DEL>	.	Too_small_size	END=29418813;SVTYPE=DEL;SVLEN=-41	TR:VR	28:8	26:0
chr2	153257476	r_65_0	T	TTCCTGAATTTCTTTG]chr20:29815552]	.	Too_low_VAF	SVTYPE=BND;MATEID=r_65_1;SVINSLEN=15;SVINSSEQ=TCCTGAATTTCTTTG	TR:VR	102:3	70:1
chr20	29815552	r_65_1	T	TCAAAGAAATTCAGGA]chr2:153257476]	.	Too_low_VAF	SVTYPE=BND;MATEID=r_65_0;SVINSLEN=15;SVINSSEQ=CAAAGAAATTCAGGA	TR:VR	102:3	70:1
chr10	9295514	i_84	T	<INS>	.	PASS	END=9295514;SVTYPE=INS;SVINSLEN=77;SVINSSEQ=TTTGGTTATCAATCGTGGTGTCTACACTGCGCATATCCTAAATAACACCCTCCCCTTGTTCTTCCCTTTCCCTTTCT	TR:VR	27:12	7:0
chr1	196636329	r_18_0	A	A]chr1:196640224]	.	PASS	SVTYPE=BND;MATEID=r_18_1	TR:VR	45:3	26:0
chr1	196640224	r_18_1	T	T]chr1:196636329]	.	PASS	SVTYPE=BND;MATEID=r_18_0	TR:VR	45:3	26:0
chr1	49623333	r_6	A	<DUP>	.	PASS	END=146575701;SVTYPE=DUP;SVLEN=96952368;SVINSLEN=4;SVINSSEQ=AATT	TR:VR	56:7	38:0
chr11	10641968	r_26_0	C	[chr11:10645423[G	.	PASS	SVTYPE=BND;MATEID=r_26_1	TR:VR	29:8	21:0
chr11	10645423	r_26_1	G	[chr11:10641968[G	.	PASS	SVTYPE=BND;MATEID=r_26_0	TR:VR	29:8	21:0
chr20	48505311	i_456	C	<INS>	.	PASS	END=48505311;SVTYPE=INS;SVINSLEN=891;SVINSSEQ=TCAAGCCTGGAACAAAGACCTCCTCCTCCCTGGGTCTCCAGCTTCCCAGACCCTCGAATTACAACCAGAATTGCTCCTCCCTGGGTCTGCAGCTCCACCACCCTCAAACTAAAACAAGACCTCTCCTCCCTGGGTCACCAGGTTCCACTGACCCTCGAACTACAACAAAATTGCTCCTCCCTGATCAGCAGCTCCACCAGCCTCAAACTCGAACAAGACTTCTCCTTCCCAGGTTGCCAAGCTACCAGACCCTCGAATTACAACAACATTGCTCCTCCCCTGGGTCTGCAGCTCCACCCACCCTCAGACCAGAAGAAGACCTCTCCACCCCTGGGTCGCCAGCTTCCTGACCCTCGAATTACAACCAAATTGCTCCTCCCTGAGTCGGCAGCTCCACGACCCTCAAACTACAACAAGACCTCTCCTCCCTGGGTCTCCAGCTTCCAGACCCTCGAATTACAACAGAATTGCTCCTCCCTGGGTCTGCAGCTCTACGACCCTCAAACTAGAACAAGACCTCTCCTCCCTGGGTCTCCAGCTTCCGGACCCTTGAATTACAACAACATTGCTCCTGCCTGGGTCTGCAGTTCCACAACCCTCAAACTAAAACAAGACCTCTCCTCCCTGTGTCGCCAGATTCCTGACCCACGAACTACAACAAAATTGCTCCTCCCCTGGTCGGCAGCTCCACGAGCCTCAAACTCGAACAAGACTTCTCCTCCCCAAATTGCCAGCTACCACACCCTCGAATTACAACAACATTGCTCCTCCCTGGGTATGTAGCTCCGACCCTCAGACCAGAACAAGACATCTCCTCCCTGGGTCACCAGCTTCCGGACCCTCCAATTACAACCAAATTGCGCCTCCCTGGTTCGGCAGCACAACAACCTT	TR:VR	54:6	23:0
chr6	7886764	d_734	T	<DEL>	.	PASS	END=7886896;SVTYPE=DEL;SVLEN=-132	TR:VR	31:6	10:0
chr19	36234332	r_55_0	A	A]chr9:129442928]	.	PASS	SVTYPE=BND;MATEID=r_55_1	TR:VR	55:6	38:1
chr9	129442928	r_55_1	G	G]chr19:36234332]	.	PASS	SVTYPE=BND;MATEID=r_55_0	TR:VR	55:6	38:1
chr21	5348639	r_82	A	<DUP>	.	Too_low_VAF	END=10758003;SVTYPE=DUP;SVLEN=5409364;SVINSLEN=157;SVINSSEQ=GGATGAATGCACACATCACAAAGAAGTTTCTTAGAATGCTTCTGTCTAGTTATTATATGAATATATTTTGTTATCCACCATAGGCCTCAAAGCTCTCCAAATGTCCACTTGCAGATTCTACAAAGAGAGTGTTCAGGGAGAGGAACGAAGACAGCTG	TR:VR	240:3	180:1
chr5	144951450	r_101_0	T	TTTTTTTTTTTTTT[chr6:113605763[	.	PASS	SVTYPE=BND;MATEID=r_101_1;SVINSLEN=13;SVINSSEQ=TTTTTTTTTTTTT	TR:VR	46:4	42:1
chr6	113605763	r_101_1	T	]chr5:144951450]AAAAAAAAAAAAAT	.	PASS	SVTYPE=BND;MATEID=r_101_0;SVINSLEN=13;SVINSSEQ=AAAAAAAAAAAAA	TR:VR	46:4	42:1