Classification Table of Copy Number Features Devised by Wang et al. for Method 'W'
Add Horizontal Arrow with Text Label to a ggplot
A Best Practice for Signature Extraction and Exposure (Activity) Attribution
Location of Centromeres at Genome Build T2T
Location of Centromeres at Genome Build hg19
Location of Centromeres at Genome Build hg38
Location of Centromeres at Genome Build mm10
Location of Centromeres at Genome Build mm9
Location of Chromosome Cytobands at Genome Build T2T
Location of Chromosome Cytobands at Genome Build hg19
Location of Chromosome Cytobands at Genome Build hg38
Location of Chromosome Cytobands at Genome Build mm10
Location of Chromosome Cytobands at Genome Build mm9
Performs Strand Bias Enrichment Analysis for a Given Sample-by-Component Matrix
Get Aneuploidy Score from Copy Number Profile
Get Adjust P Values from Group Comparison
Get Specified Bayesian NMF Result from Run
Get Ploidy from Absolute Copy Number Profile
Get Comparison Result between Signature Groups
Get Sample Groups from Signature Decomposition Information
Get Overlap Size between Interval x and y
Get proportions of pLOH score from Allele Specific Copy Number Profile
Get Shannon Diversity Index for Signatures
Get Curated Reference Signature Database
Get Signature Exposure from 'Signature' Object
Calculate Association between Signature Exposures and Other Features
Get Reconstructed Profile Cosine Similarity, RSS, etc.
Calculate Similarity between Identified Signatures and Reference Signatures
Output Signature Bootstrap Fitting Results
Read Copy Number Data from ASCAT Result Files
Read Absolute Copy Number Profile from Sequenza Result Directory
Read Structural Variation Data as RS object
Read UCSC Xena Variant Format Data as MAF Object
Show Copy Number Distribution either by Length or Chromosome
Show Copy Number Variation Frequency Profile with Circos
Show Summary Copy Number Profile for Sample Groups
A Simple and General Way for Association Analysis
Show Signature Information in Web Browser
Plot Reference (Mainly COSMIC) Signature Profile
Show Signature Bootstrap Analysis Results
Draw Corrplot for Signature Exposures and Other Features
Extract Signatures through the Automatic Relevance Determination Technique
Convert Signatures between different Genomic Distribution of Components
Fit Signature Exposures with Linear Combination Decomposition
Obtain Bootstrap Distribution of Signature Exposures of a Certain Tumor Sample
Exposure Instability Analysis of Signature Exposures with Bootstrapping
An Unified Interface to Extract Signatures
sigminer: Extract, Analyze and Visualize Signatures for Genomic Variations
A List of Simulated SBS-96 Catalog Matrix
Merged Transcript Location at Genome Build T2T
Merged Transcript Location at Genome Build hg19
Merged Transcript Location at Genome Build hg38
Merged Transcript Location at Genome Build mm10
Merged Transcript Location at Genome Build mm9