Data analysis, linear models and differential expression for microarray data.
Gordon Smyth [cre,aut], Yifang Hu [ctb], Matthew Ritchie [ctb], Jeremy Silver [ctb], James Wettenhall [ctb], Davis McCarthy [ctb], Di Wu [ctb], Wei Shi [ctb], Belinda Phipson [ctb], Aaron Lun [ctb], Natalie Thorne [ctb], Alicia Oshlack [ctb], Carolyn de Graaf [ctb], Yunshun Chen [ctb], Mette Langaas [ctb], Egil Ferkingstad [ctb], Marcus Davy [ctb], Francois Pepin [ctb], Dongseok Choi [ctb]
grDevices, graphics, stats, utils, methods
affy, AnnotationDbi, BiasedUrn, Biobase, ellipse, GO.db,
gplots, illuminaio, locfit, MASS, org.Hs.eg.db, splines,
statmod (>= 1.2.2), vsn
ExonArray, GeneExpression, Transcription,
AlternativeSplicing, DifferentialExpression,
DifferentialSplicing, GeneSetEnrichment, DataImport, Bayesian,
Clustering, Regression, TimeCourse, Microarray, MicroRNAArray,
mRNAMicroarray, OneChannel, ProprietaryPlatforms, TwoChannel,
Sequencing, RNASeq, BatchEffect, MultipleComparison,
Normalization, Preprocessing, QualityControl,
BiomedicalInformatics, CellBiology, Cheminformatics,
Epigenetics, FunctionalGenomics, Genetics, ImmunoOncology,
Metabolomics, Proteomics, SystemsBiology, Transcriptomics