Software infrastructure for efficient representation of full
genomes and their SNPs
Infrastructure shared by all the Biostrings-based genome data
	packages.
Genetics, Infrastructure, DataRepresentation,
SequenceMatching, Annotation, SNP
methods, utils, stats, matrixStats, BiocGenerics, S4Vectors,
IRanges, XVector (>= 0.29.3), GenomeInfoDb, GenomicRanges,
Biostrings, Rsamtools, rtracklayer
BiocManager, Biobase, BSgenome.Celegans.UCSC.ce2,
BSgenome.Hsapiens.UCSC.hg38,
BSgenome.Hsapiens.UCSC.hg38.masked,
BSgenome.Mmusculus.UCSC.mm10, BSgenome.Rnorvegicus.UCSC.rn5,
BSgenome.Scerevisiae.UCSC.sacCer1,
BSgenome.Hsapiens.NCBI.GRCh38,
TxDb.Hsapiens.UCSC.hg38.knownGene,
TxDb.Mmusculus.UCSC.mm10.knownGene,
SNPlocs.Hsapiens.dbSNP144.GRCh38,
XtraSNPlocs.Hsapiens.dbSNP144.GRCh38, hgu95av2probe, RUnit
utils.R OnDiskLongTable_old-class.R OnDiskLongTable-class.R
OnDiskNamedSequences-class.R SNPlocs-class.R
ODLT_SNPlocs-class.R OldFashionSNPlocs-class.R
InjectSNPsHandler-class.R XtraSNPlocs-class.R BSgenome-class.R
available.genomes.R injectSNPs.R getSeq-methods.R
extractAt-methods.R bsapply.R BSgenomeViews-class.R
BSgenome-utils.R export-methods.R BSgenomeForge.R