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VEP run statistics

VEP version (API) 86 (86)
Cache/Database /projects/rmorin/reference/ensembl_vep_cache//homo_sapiens/86_GRCh37
Species homo_sapiens
Command line options 
--cache --dir /projects/rmorin/reference/ensembl_vep_cache/ -i ./DLBCL.vcf -o DLBCL.vep.vcf --vcf --hgvs --symbol --canonical --pick --fasta /projects/rmorin/reference/lcr-modules-references/genomes/grch37/genome_fasta/genome.fa --assembly GRCh37 --offline
Start time 2024-04-19 14:53:32
End time 2024-04-19 14:56:47
Run time 195 seconds
Input file (format) ./DLBCL.vcf (VCF)
Output file DLBCL.vep.vcf [text]

General statistics

Lines of input read 57848
Variants processed 57757
Variants remaining after filtering 57757
Lines of output written 57757
Novel / existing variants -
Overlapped genes 270
Overlapped transcripts 317
Overlapped regulatory features -

Variant classes

 
 

Consequences (most severe)

 
 

Consequences (all)

 
 

Coding consequences

 
 

Variants by chromosome

 
 

Distribution of variants on chromosome 1

 

Distribution of variants on chromosome 2

 

Distribution of variants on chromosome 3

 

Distribution of variants on chromosome 4

 

Distribution of variants on chromosome 5

 

Distribution of variants on chromosome 6

 

Distribution of variants on chromosome 7

 

Distribution of variants on chromosome 8

 

Distribution of variants on chromosome 9

 

Distribution of variants on chromosome 10

 

Distribution of variants on chromosome 11

 

Distribution of variants on chromosome 12

 

Distribution of variants on chromosome 13

 

Distribution of variants on chromosome 14

 

Distribution of variants on chromosome 15

 

Distribution of variants on chromosome 16

 

Distribution of variants on chromosome 17

 

Distribution of variants on chromosome 18

 

Distribution of variants on chromosome 19

 

Distribution of variants on chromosome 20

 

Distribution of variants on chromosome 21

 

Distribution of variants on chromosome 22

 

Distribution of variants on chromosome X

 

Position in protein