#CHROM	POS	ID	REF	ALT	QUAL	FILTER	INFO	FORMAT	NORMAL	TUMOR
1	10393	.	C	T	.	PASS	NT=ref;QSS=29;QSS_NT=29;SGT=CC->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=DOWNSTREAM(MODIFIER|||||WASH7P|unprocessed_pseudogene|NON_CODING|ENST00000423562||1),DOWNSTREAM(MODIFIER|||||WASH7P|unprocessed_pseudogene|NON_CODING|ENST00000438504||1),DOWNSTREAM(MODIFIER|||||WASH7P|unprocessed_pseudogene|NON_CODING|ENST00000488147||1),DOWNSTREAM(MODIFIER|||||WASH7P|unprocessed_pseudogene|NON_CODING|ENST00000538476||1),DOWNSTREAM(MODIFIER|||||WASH7P|unprocessed_pseudogene|NON_CODING|ENST00000541675||1),INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||DDX11L1|processed_transcript|NON_CODING|ENST00000456328||1),UPSTREAM(MODIFIER|||||DDX11L1|transcribed_unprocessed_pseudogene|NON_CODING|ENST00000450305||1),UPSTREAM(MODIFIER|||||DDX11L1|unprocessed_pseudogene|NON_CODING|ENST00000515242||1),UPSTREAM(MODIFIER|||||DDX11L1|unprocessed_pseudogene|NON_CODING|ENST00000518655||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	110:16:15:0:0,0:94,264:0,0:0,4	263:30:18:0:0,0:223,558:0,0:10,28
1	136506	.	C	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->CG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=DOWNSTREAM(MODIFIER|||||RP11-34P13.10|processed_pseudogene|NON_CODING|ENST00000442987||1),DOWNSTREAM(MODIFIER|||||RP11-34P13.11|processed_pseudogene|NON_CODING|ENST00000435839||1),DOWNSTREAM(MODIFIER|||||RP11-34P13.11|processed_pseudogene|NON_CODING|ENST00000537461||1),DOWNSTREAM(MODIFIER|||||RP11-34P13.12|antisense|NON_CODING|ENST00000484859||1),DOWNSTREAM(MODIFIER|||||RP11-34P13.14|antisense|NON_CODING|ENST00000493797||1),INTRON(MODIFIER|||||RP11-34P13.11|processed_pseudogene|NON_CODING|ENST00000423372|1|1),INTRON(MODIFIER|||||RP11-34P13.11|processed_pseudogene|NON_CODING|ENST00000494149|1|1),UPSTREAM(MODIFIER|||||RP11-34P13.7|antisense|NON_CODING|ENST00000453576||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:6:0:0:0,0:26,40:0,2:0,0	49:9:0:0:1,1:34,67:5,10:0,0
1	564766	.	T	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=EXON(MODIFIER|||||MTND1P23|unprocessed_pseudogene|NON_CODING|ENST00000416931|1|1),INTRON(MODIFIER|||||RP5-857K21.4|processed_transcript|NON_CODING|ENST00000440200|1|1),UPSTREAM(MODIFIER|||||MTND2P28|unprocessed_pseudogene|NON_CODING|ENST00000457540||1),UPSTREAM(MODIFIER|||||RP5-857K21.10|unprocessed_pseudogene|NON_CODING|ENST00000514057||1),UPSTREAM(MODIFIER|||||RP5-857K21.11|unprocessed_pseudogene|NON_CODING|ENST00000416718||1),UPSTREAM(MODIFIER|||||RP5-857K21.14|unprocessed_pseudogene|NON_CODING|ENST00000467115||1),UPSTREAM(MODIFIER|||||RP5-857K21.5|lincRNA|NON_CODING|ENST00000452176||1),UPSTREAM(MODIFIER|||||RP5-857K21.7|unprocessed_pseudogene|NON_CODING|ENST00000427426||1),UPSTREAM(MODIFIER|||||hsa-mir-6723|unprocessed_pseudogene|NON_CODING|ENST00000414273||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:0:0:0:0,0:0,0:0,0:32,33	95:2:0:0:0,0:8,11:0,0:85,86
1	595382	.	G	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP5-857K21.4|processed_transcript|NON_CODING|ENST00000440200|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:0:0:0:0,0:0,0:31,34:0,0	86:0:0:0:0,0:0,0:74,75:12,12
1	726036	.	C	A	.	PASS	NT=ref;QSS=31;QSS_NT=31;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||RP11-206L10.9|lincRNA|NON_CODING|ENST00000358533||1),DOWNSTREAM(MODIFIER|||||RP11-206L10.9|lincRNA|NON_CODING|ENST00000586928||1),DOWNSTREAM(MODIFIER|||||RP11-206L10.9|lincRNA|NON_CODING|ENST00000591702||1),INTRON(MODIFIER|||||RP11-206L10.9|lincRNA|NON_CODING|ENST00000429505|1|1),INTRON(MODIFIER|||||RP11-206L10.9|lincRNA|NON_CODING|ENST00000585745|1|1),INTRON(MODIFIER|||||RP11-206L10.9|lincRNA|NON_CODING|ENST00000585768|1|1),INTRON(MODIFIER|||||RP11-206L10.9|lincRNA|NON_CODING|ENST00000586288|1|1),INTRON(MODIFIER|||||RP11-206L10.9|lincRNA|NON_CODING|ENST00000587530|1|1),INTRON(MODIFIER|||||RP11-206L10.9|lincRNA|NON_CODING|ENST00000588951|1|1),INTRON(MODIFIER|||||RP11-206L10.9|lincRNA|NON_CODING|ENST00000589531|1|1),INTRON(MODIFIER|||||RP11-206L10.9|lincRNA|NON_CODING|ENST00000590848|1|1),INTRON(MODIFIER|||||RP11-206L10.9|lincRNA|NON_CODING|ENST00000591440|1|1),INTRON(MODIFIER|||||RP11-206L10.9|lincRNA|NON_CODING|ENST00000593022|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	66:4:10:0:0,0:62,108:0,3:0,0	185:15:37:0:12,25:156,239:2,7:0,1
1	727815	rs77874774	T	C	.	PASS	NT=ref;QSS=24;QSS_NT=24;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||RP11-206L10.9|lincRNA|NON_CODING|ENST00000591702||1),INTRON(MODIFIER|||||RP11-206L10.9|lincRNA|NON_CODING|ENST00000429505|1|1),INTRON(MODIFIER|||||RP11-206L10.9|lincRNA|NON_CODING|ENST00000585745|1|1),INTRON(MODIFIER|||||RP11-206L10.9|lincRNA|NON_CODING|ENST00000585768|1|1),INTRON(MODIFIER|||||RP11-206L10.9|lincRNA|NON_CODING|ENST00000586288|1|1),INTRON(MODIFIER|||||RP11-206L10.9|lincRNA|NON_CODING|ENST00000587530|1|1),INTRON(MODIFIER|||||RP11-206L10.9|lincRNA|NON_CODING|ENST00000588951|1|1),INTRON(MODIFIER|||||RP11-206L10.9|lincRNA|NON_CODING|ENST00000589531|1|1),INTRON(MODIFIER|||||RP11-206L10.9|lincRNA|NON_CODING|ENST00000590848|1|1),INTRON(MODIFIER|||||RP11-206L10.9|lincRNA|NON_CODING|ENST00000591440|1|1),INTRON(MODIFIER|||||RP11-206L10.9|lincRNA|NON_CODING|ENST00000593022|1|1);RSPOS=727815;dbSNPBuildID=131;SSR=0;SAO=0;VP=050000000001040102000100;WGT=1;VC=SNV;VLD;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	48:1:0:0:0,0:0,0:0,0:47,48	111:0:0:0:0,0:12,17:0,0:99,99
1	824870	.	A	G	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	45:0:0:0:45,47:0,0:0,0:0,0	124:2:0:0:115,128:0,0:7,12:0,0
1	1128016	.	G	A	.	PASS	NT=ref;QSS=31;QSS_NT=31;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||673|TTLL10|protein_coding|CODING|ENST00000379289|13|1),INTRON(MODIFIER||||673|TTLL10|protein_coding|CODING|ENST00000379290|13|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	64:1:0:0:0,0:0,0:63,67:0,0	175:8:0:0:8,12:0,1:159,172:0,0
1	1138176	.	T	G	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||169|TNFRSF18|protein_coding|CODING|ENST00000486728||1),DOWNSTREAM(MODIFIER||||234|TNFRSF18|protein_coding|CODING|ENST00000379265||1),DOWNSTREAM(MODIFIER||||241|TNFRSF18|protein_coding|CODING|ENST00000379268||1),DOWNSTREAM(MODIFIER||||255|TNFRSF18|protein_coding|CODING|ENST00000328596||1),DOWNSTREAM(MODIFIER||||673|TTLL10|protein_coding|CODING|ENST00000379289||1),DOWNSTREAM(MODIFIER||||673|TTLL10|protein_coding|CODING|ENST00000379290||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	47:3:0:0:0,0:0,1:0,1:44,49	94:9:0:0:0,0:0,2:9,11:76,86
1	1475301	.	T	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||194|SSU72|protein_coding|CODING|ENST00000291386||1),DOWNSTREAM(MODIFIER|||||SSU72|retained_intron|CODING|ENST00000378725||1),DOWNSTREAM(MODIFIER|||||SSU72|retained_intron|CODING|ENST00000378726||1),INTRON(MODIFIER||||173|TMEM240|protein_coding|CODING|ENST00000378733|1|1),INTRON(MODIFIER||||173|TMEM240|protein_coding|CODING|ENST00000425828|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:3:0:0:0,0:0,0:0,0:31,36	46:3:0:0:0,0:4,4:1,3:38,51
1	2256596	.	C	T	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||497|MORN1|protein_coding|CODING|ENST00000378531|12|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:1:0:0:0,0:37,51:0,0:0,0	75:9:0:0:0,0:58,110:1,1:7,7
1	2380764	.	T	C	.	PASS	NT=ref;QSS=25;QSS_NT=25;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	50:1:0:0:0,0:0,0:0,0:49,51	76:0:0:0:0,0:6,6:0,0:70,71
1	2623230	.	C	T	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||369|TTC34|protein_coding|CODING|ENST00000401094|4|1),INTRON(MODIFIER||||566|TTC34|protein_coding|CODING|ENST00000401095|4|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	76:3:0:0:1,1:70,87:0,0:2,3	166:4:0:0:1,1:151,183:2,3:8,10
1	2628666	.	G	T	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=GG->GT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER||||369|TTC34|protein_coding|CODING|ENST00000401094|4|1),INTRON(MODIFIER||||566|TTC34|protein_coding|CODING|ENST00000401095|4|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	105:13:0:0:0,0:0,0:92,144:0,1	196:30:0:0:0,0:0,0:155,248:11,12
1	2769429	.	G	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:2:0:0:0,1:0,0:33,46:1,1	51:2:0:0:7,9:0,1:42,77:0,0
1	2933561	.	G	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER||||377|ACTRT2|protein_coding|CODING|ENST00000378404||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:1:0:0:0,0:0,0:30,35:1,1	85:1:0:0:11,13:0,0:73,82:0,0
1	3181067	.	A	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1092|PRDM16|protein_coding|CODING|ENST00000512462|2|1),INTRON(MODIFIER||||1177|PRDM16|protein_coding|CODING|ENST00000514189|3|1),INTRON(MODIFIER||||1178|PRDM16|protein_coding|CODING|ENST00000511072|3|1),INTRON(MODIFIER||||1256|PRDM16|protein_coding|CODING|ENST00000442529|3|1),INTRON(MODIFIER||||1257|PRDM16|protein_coding|CODING|ENST00000378391|3|1),INTRON(MODIFIER||||1275|PRDM16|protein_coding|CODING|ENST00000441472|3|1),INTRON(MODIFIER||||1276|PRDM16|protein_coding|CODING|ENST00000270722|3|1),INTRON(MODIFIER||||1276|PRDM16|protein_coding|CODING|ENST00000378398|3|1),INTRON(MODIFIER|||||PRDM16|processed_transcript|CODING|ENST00000463591|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:1:0:0:37,37:0,0:1,2:0,0	97:12:0:0:70,71:1,3:14,24:0,0
1	3242610	rs7550644	G	A	.	PASS	NT=ref;QSS=18;QSS_NT=15;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1092|PRDM16|protein_coding|CODING|ENST00000512462|2|1),INTRON(MODIFIER||||1177|PRDM16|protein_coding|CODING|ENST00000514189|3|1),INTRON(MODIFIER||||1178|PRDM16|protein_coding|CODING|ENST00000511072|3|1),INTRON(MODIFIER||||1256|PRDM16|protein_coding|CODING|ENST00000442529|3|1),INTRON(MODIFIER||||1257|PRDM16|protein_coding|CODING|ENST00000378391|3|1),INTRON(MODIFIER||||1275|PRDM16|protein_coding|CODING|ENST00000441472|3|1),INTRON(MODIFIER||||1276|PRDM16|protein_coding|CODING|ENST00000270722|3|1),INTRON(MODIFIER||||1276|PRDM16|protein_coding|CODING|ENST00000378398|3|1),INTRON(MODIFIER|||||PRDM16|processed_transcript|CODING|ENST00000463591|1|1);RSPOS=3242610;GMAF=0.0582;dbSNPBuildID=116;SSR=0;SAO=0;VP=050000080001040016000100;GENEINFO=PRDM16:63976;WGT=1;VC=SNV;INT;VLD;KGPhase1;KGPROD;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	23:0:0:0:0,0:2,2:21,22:0,0	70:15:0:0:9,14:4,10:40,47:2,3
1	4124627	.	T	G	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	50:6:0:0:0,0:0,0:0,0:44,56	110:9:0:0:0,0:0,3:9,14:92,108
1	4726662	rs80211253	C	T	.	PASS	NT=ref;QSS=26;QSS_NT=26;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||411|AJAP1|protein_coding|CODING|ENST00000378190|1|1),INTRON(MODIFIER||||411|AJAP1|protein_coding|CODING|ENST00000378191|1|1);RSPOS=4726662;dbSNPBuildID=131;SSR=0;SAO=0;VP=050000080001000102000100;GENEINFO=AJAP1:55966;WGT=1;VC=SNV;INT;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	25:1:0:0:0,1:22,23:2,2:0,0	58:8:0:0:1,2:36,44:0,1:13,16
1	5107211	.	G	T	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:1:0:0:0,0:0,0:38,39:0,0	105:0:0:0:0,0:0,0:98,103:7,7
1	5107331	.	G	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:0:0:0:0,0:0,0:35,35:0,0	95:1:0:0:6,6:0,0:88,90:0,0
1	5172550	.	A	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=AA->AC;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	60:4:0:0:56,81:0,2:0,3:0,0	135:26:0:0:102,177:6,13:1,3:0,0
1	5447166	.	T	G	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:1:0:0:0,0:0,0:0,1:39,62	85:9:0:0:0,0:0,0:10,16:66,127
1	5653460	.	A	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-154H17.1|lincRNA|NON_CODING|ENST00000413887|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	46:1:0:0:44,45:1,1:0,0:0,0	116:1:0:0:102,103:13,13:0,0:0,0
1	5734853	.	C	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	105:39:0:0:0,0:66,125:0,0:0,1	182:50:0:0:0,0:125,221:0,0:7,16
1	6643000	.	A	G	.	PASS	NT=ref;QSS=23;QSS_NT=23;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||291|ZBTB48|protein_coding|CODING|ENST00000435905||1),DOWNSTREAM(MODIFIER||||309|ZBTB48|protein_coding|CODING|ENST00000319084||1),DOWNSTREAM(MODIFIER||||480|TAS1R1|protein_coding|CODING|ENST00000328191||1),DOWNSTREAM(MODIFIER||||587|TAS1R1|protein_coding|CODING|ENST00000351136||1),DOWNSTREAM(MODIFIER||||841|TAS1R1|protein_coding|CODING|ENST00000333172||1),INTRON(MODIFIER||||229|ZBTB48|protein_coding|CODING|ENST00000488936|2|1),INTRON(MODIFIER||||688|ZBTB48|protein_coding|CODING|ENST00000377674|3|1),UPSTREAM(MODIFIER|||||ZBTB48|nonsense_mediated_decay|CODING|ENST00000466813||1),UPSTREAM(MODIFIER|||||ZBTB48|retained_intron|CODING|ENST00000482360||1),UPSTREAM(MODIFIER|||||ZBTB48|retained_intron|CODING|ENST00000498342||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	45:0:0:0:45,45:0,0:0,0:0,0	129:4:0:0:117,120:0,0:8,9:0,2
1	10274536	.	T	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER||||1153|KIF1B|protein_coding|CODING|ENST00000377093|1|1),INTRON(MODIFIER||||1770|KIF1B|protein_coding|CODING|ENST00000263934|1|1),INTRON(MODIFIER||||1816|KIF1B|protein_coding|CODING|ENST00000377086|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	43:0:0:0:0,0:0,0:0,0:43,52	92:4:0:0:0,0:4,4:0,0:84,98
1	10547645	.	G	A	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||160|PEX14|protein_coding|CODING|ENST00000491661|1|1),INTRON(MODIFIER||||313|PEX14|protein_coding|CODING|ENST00000538836|1|1),INTRON(MODIFIER||||377|PEX14|protein_coding|CODING|ENST00000356607|1|1),INTRON(MODIFIER|||||PEX14|retained_intron|CODING|ENST00000472851|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	42:0:0:0:0,0:0,0:42,42:0,0	83:0:0:0:9,10:0,0:74,74:0,0
1	11205639	.	T	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||2549|MTOR|protein_coding|CODING|ENST00000361445|32|1),INTRON(MODIFIER|||||MTOR-AS1|antisense|NON_CODING|ENST00000420480|3|1),INTRON(MODIFIER|||||MTOR-AS1|antisense|NON_CODING|ENST00000445982|3|1),UPSTREAM(MODIFIER|||||MTOR|processed_transcript|CODING|ENST00000495435||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:1:0:0:0,0:1,1:1,1:30,32	84:3:0:0:4,4:0,0:0,0:77,80
1	11310351	.	A	G	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||2549|MTOR|protein_coding|CODING|ENST00000361445|6|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:3:0:0:33,38:0,0:1,1:0,0	97:5:0:0:73,77:2,3:16,17:1,2
1	11822186	.	G	T	.	PASS	NT=ref;QSS=25;QSS_NT=25;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|Ggt/Tgt|G115C|1473|C1orf167|protein_coding|CODING|ENST00000433342|1|1),UPSTREAM(MODIFIER||||242|C1orf167|protein_coding|CODING|ENST00000435090||1),UPSTREAM(MODIFIER|||||C1orf167|processed_transcript|CODING|ENST00000484153||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	52:2:0:0:0,0:1,1:49,51:0,0	98:0:0:0:1,1:0,0:88,88:9,9
1	12855318	rs111963106	G	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER||||229|PRAMEF1|protein_coding|CODING|ENST00000400814|1|1),INTRON(MODIFIER||||474|PRAMEF1|protein_coding|CODING|ENST00000332296|3|1);RSPOS=12855318;dbSNPBuildID=132;SSR=0;SAO=0;VP=050000080001000102000100;GENEINFO=PRAMEF1:65121;WGT=1;VC=SNV;INT;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	27:4:0:0:0,1:0,0:23,30:0,0	53:13:0:0:8,14:0,0:32,49:0,0
1	13350395	.	T	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||RP11-248D7.2|unprocessed_pseudogene|NON_CODING|ENST00000453094||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	28:1:0:0:0,0:0,1:0,0:27,27	59:1:0:0:0,0:8,13:0,0:50,53
1	14979184	.	T	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||421|KAZN|protein_coding|CODING|ENST00000422387|1|1),INTRON(MODIFIER||||421|KAZN|protein_coding|CODING|ENST00000503743|2|1),INTRON(MODIFIER||||775|KAZN|protein_coding|CODING|ENST00000376030|1|1),INTRON(MODIFIER|||||KAZN|retained_intron|CODING|ENST00000491547|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	16:0:0:0:0,0:0,0:0,0:16,37	30:2:0:0:0,0:6,11:0,0:22,59
1	15808977	.	C	G	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||124|CELA2B|protein_coding|CODING|ENST00000422901||1),INTRON(MODIFIER||||269|CELA2B|protein_coding|CODING|ENST00000375910|4|1),INTRON(MODIFIER|||||CELA2B|processed_transcript|CODING|ENST00000494280|5|1),UPSTREAM(MODIFIER|||||CELA2B|processed_transcript|CODING|ENST00000488764||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:0:0:0:0,0:39,39:0,0:0,0	93:2:0:0:0,0:82,84:9,9:0,0
1	16010432	.	C	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER||||1019|PLEKHM2|protein_coding|CODING|ENST00000375799||1),UPSTREAM(MODIFIER||||999|PLEKHM2|protein_coding|CODING|ENST00000375793||1),UPSTREAM(MODIFIER|||||AL121992.1|miRNA|NON_CODING|ENST00000584345||1),UPSTREAM(MODIFIER|||||PLEKHM2|processed_transcript|CODING|ENST00000462455||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:1:0:0:0,0:29,29:2,3:0,0	83:9:0:0:0,0:62,68:4,7:8,8
1	16469518	.	A	G	.	PASS	NT=ref;QSS=24;QSS_NT=24;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||976|EPHA2|protein_coding|CODING|ENST00000358432|3|1),INTRON(MODIFIER|||||EPHA2|processed_transcript|CODING|ENST00000480202|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	26:1:0:0:25,28:0,0:0,0:0,0	52:4:0:0:37,38:0,0:11,17:0,0
1	16841561	.	G	A	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=EXON(MODIFIER|||||RP4-798A10.7|lincRNA|NON_CODING|ENST00000562878|1|1),UPSTREAM(MODIFIER|||||RNU1-1|snRNA|NON_CODING|ENST00000383925||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	41:0:0:0:0,0:0,0:41,66:0,0	101:2:0:0:6,8:0,0:92,154:1,2
1	16906843	.	G	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||NBPF1|processed_transcript|NON_CODING|ENST00000392963|11|1),INTRON(MODIFIER|||||NBPF1|processed_transcript|NON_CODING|ENST00000430580|8|1),UPSTREAM(MODIFIER|||||NBPF1|processed_transcript|NON_CODING|ENST00000287968||1),UPSTREAM(MODIFIER|||||NBPF1|processed_transcript|NON_CODING|ENST00000432949||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	43:0:0:0:1,1:0,0:42,56:0,0	77:1:0:0:23,27:0,0:53,78:0,0
1	17041355	.	T	C	.	PASS	NT=ref;QSS=45;QSS_NT=45;SGT=TT->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER|||||ESPNP|processed_transcript|NON_CODING|ENST00000492551|1|1),INTRON(MODIFIER|||||ESPNP|transcribed_unprocessed_pseudogene|NON_CODING|ENST00000270691|1|1),INTRON(MODIFIER|||||RP1-163M9.6|processed_pseudogene|NON_CODING|ENST00000549765|1|1),UPSTREAM(MODIFIER|||||RP1-163M9.6|processed_pseudogene|NON_CODING|ENST00000535711||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	105:3:0:0:0,0:0,1:0,0:102,105	300:1:0:0:0,0:16,16:0,0:283,290
1	17085872	rs1806514;COSM1127271	A	G	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||15|MST1P9|protein_coding|CODING|ENST00000545160||1),NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|Tgg/Cgg|W307R|564|MST1P9|protein_coding|CODING|ENST00000389184|10|1),NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|Tgg/Cgg|W317R|689|MST1P9|protein_coding|CODING|ENST00000334998|8|1),NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|Tgg/Cgg|W317R|715|MST1P9|protein_coding|CODING|ENST00000442552|8|1),UPSTREAM(MODIFIER|||||MST1P9|nonsense_mediated_decay|CODING|ENST00000455405||1),UPSTREAM(MODIFIER|||||MST1P9|retained_intron|CODING|ENST00000544155||1);RSPOS=17085872;RV;dbSNPBuildID=92;SSR=1;SAO=0;VP=050100000209000102000140;GENEINFO=MST1P9:11223;WGT=1;VC=SNV;SLO;REF;CFL;GNO;OTHERKG;GENE=MST1P9;STRAND=-;CDS=c.919T>C;AA=p.W307R;CNT=1	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	90:0:0:0:90,90:0,0:0,0:0,0	196:2:0:0:182,187:2,2:10,12:0,0
1	17197439	rs202127903	G	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->GT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=UPSTREAM(MODIFIER|||||RP11-108M9.3|lincRNA|NON_CODING|ENST00000438002||1),UPSTREAM(MODIFIER|||||RP11-108M9.3|lincRNA|NON_CODING|ENST00000451828||1),UPSTREAM(MODIFIER|||||RP11-108M9.3|lincRNA|NON_CODING|ENST00000453554||1),UPSTREAM(MODIFIER|||||RP11-108M9.3|lincRNA|NON_CODING|ENST00000457856||1),UPSTREAM(MODIFIER|||||U1|snRNA|NON_CODING|ENST00000362684||1),UTR_3_PRIME(MODIFIER||||131|BX284668.1|protein_coding|CODING|ENST00000356370|2|1);RSPOS=17197439;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	103:1:0:0:0,0:0,0:101,104:1,2	241:3:0:0:0,0:0,0:228,242:10,11
1	19867724	.	G	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:0:1:0:0,0:0,0:30,30:0,0	84:1:2:0:0,0:0,0:77,79:6,6
1	20600577	.	C	G	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:0:0:0:0,0:35,35:0,0:0,0	95:7:0:0:0,0:78,85:10,12:0,1
1	20708963	rs74439179	A	G	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP4-749H3.1|lincRNA|NON_CODING|ENST00000426428|6|1);RSPOS=20708963;dbSNPBuildID=131;SSR=0;SAO=0;VP=050000080005000102000100;GENEINFO=LOC339505:339505;WGT=1;VC=SNV;INT;ASP;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:0:0:0:34,53:0,0:0,0:0,0	70:0:2:0:66,116:0,0:4,7:0,0
1	21379727	.	C	T	.	PASS	NT=ref;QSS=24;QSS_NT=24;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1585|EIF4G3|protein_coding|CODING|ENST00000400422|3|1),INTRON(MODIFIER||||216|EIF4G3|protein_coding|CODING|ENST00000438975|3|1),INTRON(MODIFIER||||219|EIF4G3|protein_coding|CODING|ENST00000411888|3|1),INTRON(MODIFIER||||504|EIF4G3|protein_coding|CODING|ENST00000374927|1|1),INTRON(MODIFIER||||630|EIF4G3|protein_coding|CODING|ENST00000356916|4|1),UPSTREAM(MODIFIER||||1305|EIF4G3|protein_coding|CODING|ENST00000374935||1),UPSTREAM(MODIFIER||||1585|EIF4G3|protein_coding|CODING|ENST00000264211||1),UPSTREAM(MODIFIER||||1591|EIF4G3|protein_coding|CODING|ENST00000374937||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	49:2:0:0:0,0:47,53:0,0:0,0	108:3:0:0:0,0:95,105:1,1:9,15
1	21379843	.	A	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=AA->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER||||1585|EIF4G3|protein_coding|CODING|ENST00000400422|3|1),INTRON(MODIFIER||||216|EIF4G3|protein_coding|CODING|ENST00000438975|3|1),INTRON(MODIFIER||||219|EIF4G3|protein_coding|CODING|ENST00000411888|3|1),INTRON(MODIFIER||||504|EIF4G3|protein_coding|CODING|ENST00000374927|1|1),INTRON(MODIFIER||||630|EIF4G3|protein_coding|CODING|ENST00000356916|4|1),UPSTREAM(MODIFIER||||1305|EIF4G3|protein_coding|CODING|ENST00000374935||1),UPSTREAM(MODIFIER||||1585|EIF4G3|protein_coding|CODING|ENST00000264211||1),UPSTREAM(MODIFIER||||1591|EIF4G3|protein_coding|CODING|ENST00000374937||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	41:3:0:0:35,39:3,5:0,1:0,0	114:9:0:0:91,97:3,5:11,17:0,0
1	21379854	.	G	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1585|EIF4G3|protein_coding|CODING|ENST00000400422|3|1),INTRON(MODIFIER||||216|EIF4G3|protein_coding|CODING|ENST00000438975|3|1),INTRON(MODIFIER||||219|EIF4G3|protein_coding|CODING|ENST00000411888|3|1),INTRON(MODIFIER||||504|EIF4G3|protein_coding|CODING|ENST00000374927|1|1),INTRON(MODIFIER||||630|EIF4G3|protein_coding|CODING|ENST00000356916|4|1),UPSTREAM(MODIFIER||||1305|EIF4G3|protein_coding|CODING|ENST00000374935||1),UPSTREAM(MODIFIER||||1585|EIF4G3|protein_coding|CODING|ENST00000264211||1),UPSTREAM(MODIFIER||||1591|EIF4G3|protein_coding|CODING|ENST00000374937||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	43:5:0:0:0,0:0,0:38,48:0,0	115:6:0:0:7,9:0,0:102,108:0,0
1	26014461	.	G	T	.	PASS	NT=ref;QSS=28;QSS_NT=28;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||450|MAN1C1|protein_coding|CODING|ENST00000263979|3|1),INTRON(MODIFIER||||630|MAN1C1|protein_coding|CODING|ENST00000374332|2|1),INTRON(MODIFIER|||||MAN1C1|processed_transcript|CODING|ENST00000473891|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	49:0:0:0:0,0:0,0:49,49:0,0	107:0:0:0:0,0:0,0:91,92:16,16
1	28390889	rs2311501	C	A	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||447|EYA3|protein_coding|CODING|ENST00000436342|1|1),INTRON(MODIFIER||||520|EYA3|protein_coding|CODING|ENST00000545175|1|1),INTRON(MODIFIER||||527|EYA3|protein_coding|CODING|ENST00000540618|1|1),INTRON(MODIFIER||||536|EYA3|protein_coding|CODING|ENST00000373863|1|1),INTRON(MODIFIER||||573|EYA3|protein_coding|CODING|ENST00000373871|1|1),INTRON(MODIFIER|||||EYA3|processed_transcript|CODING|ENST00000471498|1|1);RSPOS=28390889;RV;dbSNPBuildID=100;SSR=0;SAO=0;VP=050100080005000002000100;GENEINFO=EYA3:2140;WGT=1;VC=SNV;SLO;INT;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	44:4:0:0:0,0:40,44:0,0:0,0	94:4:1:0:5,6:85,88:0,0:0,0
1	28688864	.	T	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	42:0:0:0:0,0:0,0:0,0:42,44	115:2:0:0:0,0:5,5:0,0:108,111
1	29465564	.	A	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	46:1:0:0:42,43:1,1:1,1:1,1	84:6:0:0:68,72:2,2:0,0:8,11
1	29515768	rs188444822	T	G	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||297|MECR|protein_coding|CODING|ENST00000373791||1),DOWNSTREAM(MODIFIER||||373|MECR|protein_coding|CODING|ENST00000263702||1),DOWNSTREAM(MODIFIER|||||MECR|nonsense_mediated_decay|CODING|ENST00000463412||1),DOWNSTREAM(MODIFIER|||||MECR|processed_transcript|CODING|ENST00000473030||1),DOWNSTREAM(MODIFIER|||||MECR|processed_transcript|CODING|ENST00000475773||1),DOWNSTREAM(MODIFIER|||||MECR|processed_transcript|CODING|ENST00000478505||1),DOWNSTREAM(MODIFIER|||||MECR|processed_transcript|CODING|ENST00000483435||1),INTERGENIC(MODIFIER||||||||||1);RSPOS=29515768;GMAF=0.0192;dbSNPBuildID=135;SSR=0;SAO=0;VP=050000000005000014000100;WGT=1;VC=SNV;ASP;KGPhase1;KGPROD	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	41:1:0:0:0,0:0,0:0,0:40,41	91:1:0:0:0,0:0,0:5,5:85,86
1	31612995	.	G	A	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	46:2:0:0:0,0:0,0:44,47:0,0	85:8:0:0:6,7:1,1:70,78:0,0
1	31613031	.	T	C	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=TT->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	50:2:0:0:0,0:0,0:1,1:47,50	98:8:0:0:0,1:5,5:0,0:85,93
1	31752501	.	A	G	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||357|SNRNP40|protein_coding|CODING|ENST00000263694|5|1),INTRON(MODIFIER||||409|SNRNP40|protein_coding|CODING|ENST00000446633|5|1),INTRON(MODIFIER|||||SNRNP40|processed_transcript|CODING|ENST00000474025|2|1),INTRON(MODIFIER|||||SNRNP40|processed_transcript|CODING|ENST00000489853|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:2:0:0:38,40:0,0:0,0:0,0	98:2:0:0:90,92:0,0:6,6:0,0
1	32632494	.	G	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||KPNA6|processed_transcript|CODING|ENST00000469790||1),INTRON(MODIFIER||||320|KPNA6|protein_coding|CODING|ENST00000446515|8|1),INTRON(MODIFIER||||533|KPNA6|protein_coding|CODING|ENST00000537234|11|1),INTRON(MODIFIER||||536|KPNA6|protein_coding|CODING|ENST00000373625|11|1),INTRON(MODIFIER||||541|KPNA6|protein_coding|CODING|ENST00000545542|11|1),INTRON(MODIFIER|||||KPNA6|processed_transcript|CODING|ENST00000471599|11|1),UPSTREAM(MODIFIER|||||RP4-622L5.2|processed_transcript|NON_CODING|ENST00000515055||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	51:3:0:0:1,1:0,0:47,50:0,0	99:1:0:0:5,6:0,0:93,94:0,0
1	38216978	.	T	C	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||snoU13|snoRNA|NON_CODING|ENST00000459008||1),INTRON(MODIFIER||||1008|EPHA10|protein_coding|CODING|ENST00000373048|5|1),INTRON(MODIFIER||||1014|EPHA10|protein_coding|CODING|ENST00000427468|5|1),INTRON(MODIFIER||||155|EPHA10|protein_coding|CODING|ENST00000540011|1|1),INTRON(MODIFIER||||543|EPHA10|protein_coding|CODING|ENST00000330210|1|1),INTRON(MODIFIER|||||EPHA10|nonsense_mediated_decay|CODING|ENST00000437645|1|1),INTRON(MODIFIER|||||EPHA10|processed_transcript|CODING|ENST00000446149|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	47:1:0:0:0,0:0,0:0,0:46,48	107:3:0:0:0,0:6,6:1,1:97,100
1	39019799	.	C	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:0:0:0:0,0:35,35:0,0:0,0	87:0:0:0:0,0:78,78:0,0:9,9
1	40005043	.	G	T	.	PASS	NT=ref;QSS=24;QSS_NT=24;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||PPIEL|unprocessed_pseudogene|NON_CODING|ENST00000427240|6|1),INTRON(MODIFIER|||||RP11-69E11.4|processed_transcript|NON_CODING|ENST00000417869|2|1),INTRON(MODIFIER|||||RP11-69E11.4|processed_transcript|NON_CODING|ENST00000431553|1|1),INTRON(MODIFIER|||||RP11-69E11.4|processed_transcript|NON_CODING|ENST00000440190|1|1),INTRON(MODIFIER|||||RP11-69E11.4|processed_transcript|NON_CODING|ENST00000450157|1|1),UPSTREAM(MODIFIER|||||RP11-69E11.4|processed_transcript|NON_CODING|ENST00000458207||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	48:0:0:0:0,0:0,0:48,48:0,0	96:1:0:0:0,0:0,0:89,91:6,6
1	40799112	.	A	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=EXON(MODIFIER|||||RP1-228H13.1|processed_pseudogene|NON_CODING|ENST00000430225|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	46:0:0:0:46,46:0,0:0,0:0,0	87:2:0:0:78,80:0,0:7,9:0,0
1	40799115	.	A	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=EXON(MODIFIER|||||RP1-228H13.1|processed_pseudogene|NON_CODING|ENST00000430225|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	46:0:0:0:46,46:0,0:0,0:0,0	87:2:0:0:78,79:0,0:7,9:0,1
1	41740570	.	G	T	.	PASS	NT=ref;QSS=26;QSS_NT=26;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-399E6.1|lincRNA|NON_CODING|ENST00000445073|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	52:0:0:0:0,0:0,0:52,52:0,0	99:0:0:0:0,0:0,0:92,92:7,7
1	41992451	.	A	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AC;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER||||2405|HIVEP3|protein_coding|CODING|ENST00000372584|4|1),INTRON(MODIFIER||||2405|HIVEP3|protein_coding|CODING|ENST00000429157|4|1),INTRON(MODIFIER||||2406|HIVEP3|protein_coding|CODING|ENST00000247584|4|1),INTRON(MODIFIER||||2406|HIVEP3|protein_coding|CODING|ENST00000372583|5|1),INTRON(MODIFIER|||||HIVEP3|processed_transcript|CODING|ENST00000460604|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	22:2:0:0:20,24:0,1:0,0:0,0	64:6:1:0:47,57:11,18:0,0:0,0
1	41997236	rs190238889	A	G	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER||||2405|HIVEP3|protein_coding|CODING|ENST00000372584|4|1),INTRON(MODIFIER||||2405|HIVEP3|protein_coding|CODING|ENST00000429157|4|1),INTRON(MODIFIER||||2406|HIVEP3|protein_coding|CODING|ENST00000247584|4|1),INTRON(MODIFIER||||2406|HIVEP3|protein_coding|CODING|ENST00000372583|5|1),INTRON(MODIFIER|||||HIVEP3|processed_transcript|CODING|ENST00000460604|2|1),UPSTREAM(MODIFIER|||||RP11-486B10.3|antisense|NON_CODING|ENST00000440249||1);RSPOS=41997236;GMAF=0.1941;dbSNPBuildID=135;SSR=0;SAO=0;VP=050000080005000014000100;GENEINFO=HIVEP3:59269;WGT=1;VC=SNV;INT;ASP;KGPhase1;KGPROD	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	20:1:0:0:19,34:0,0:0,2:0,0	47:6:0:0:31,66:0,0:10,21:0,0
1	42697995	.	G	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||381|FOXJ3|protein_coding|CODING|ENST00000445886|4|1),INTRON(MODIFIER||||588|FOXJ3|protein_coding|CODING|ENST00000361776|4|1),INTRON(MODIFIER||||622|FOXJ3|protein_coding|CODING|ENST00000361346|4|1),INTRON(MODIFIER||||622|FOXJ3|protein_coding|CODING|ENST00000372572|6|1),INTRON(MODIFIER||||622|FOXJ3|protein_coding|CODING|ENST00000372573|4|1),INTRON(MODIFIER||||622|FOXJ3|protein_coding|CODING|ENST00000545068|4|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	22:0:0:0:0,0:0,0:22,23:0,0	67:0:0:0:0,0:0,0:56,56:11,13
1	43216248	.	C	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||LEPRE1|retained_intron|CODING|ENST00000463465||1),INTRON(MODIFIER||||697|LEPRE1|protein_coding|CODING|ENST00000397054|10|1),INTRON(MODIFIER||||736|LEPRE1|protein_coding|CODING|ENST00000296388|10|1),INTRON(MODIFIER||||804|LEPRE1|protein_coding|CODING|ENST00000236040|10|1),INTRON(MODIFIER|||||LEPRE1|retained_intron|CODING|ENST00000460031|9|1),INTRON(MODIFIER|||||LEPRE1|retained_intron|CODING|ENST00000481465|3|1),INTRON(MODIFIER|||||LEPRE1|retained_intron|CODING|ENST00000495874|10|1),UPSTREAM(MODIFIER|||||LEPRE1|processed_transcript|CODING|ENST00000462474||1),UPSTREAM(MODIFIER|||||LEPRE1|retained_intron|CODING|ENST00000460831||1),UPSTREAM(MODIFIER|||||LEPRE1|retained_intron|CODING|ENST00000472802||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	43:2:0:0:0,0:40,47:0,0:1,1	117:4:0:0:0,0:106,114:0,0:7,7
1	43294169	.	A	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||ERMAP|processed_transcript|CODING|ENST00000470938||1),INTRON(MODIFIER||||475|ERMAP|protein_coding|CODING|ENST00000372514|1|1),INTRON(MODIFIER||||475|ERMAP|protein_coding|CODING|ENST00000372517|2|1),INTRON(MODIFIER|||||ERMAP|processed_transcript|CODING|ENST00000487556|2|1),UPSTREAM(MODIFIER||||385|ERMAP|protein_coding|CODING|ENST00000328249||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:1:0:0:34,36:0,0:0,0:0,0	88:1:0:0:79,83:0,0:1,1:7,7
1	43625431	.	T	A	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||106|FAM183A|protein_coding|CODING|ENST00000410048||1),DOWNSTREAM(MODIFIER||||134|FAM183A|protein_coding|CODING|ENST00000335282||1),DOWNSTREAM(MODIFIER||||134|FAM183A|protein_coding|CODING|ENST00000409706||1),DOWNSTREAM(MODIFIER||||138|FAM183A|protein_coding|CODING|ENST00000409396||1),DOWNSTREAM(MODIFIER||||306|EBNA1BP2|protein_coding|CODING|ENST00000236051||1),DOWNSTREAM(MODIFIER||||361|EBNA1BP2|protein_coding|CODING|ENST00000431635||1),DOWNSTREAM(MODIFIER||||44|FAM183A|protein_coding|CODING|ENST00000409337||1),DOWNSTREAM(MODIFIER||||82|FAM183A|protein_coding|CODING|ENST00000410025||1),DOWNSTREAM(MODIFIER|||||EBNA1BP2|processed_transcript|CODING|ENST00000463906||1),DOWNSTREAM(MODIFIER|||||FAM183A|retained_intron|CODING|ENST00000481753||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:1:0:0:0,0:0,0:0,0:34,35	85:0:0:0:7,7:0,0:0,0:78,78
1	48255536	.	C	G	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||517|TRABD2B|protein_coding|CODING|ENST00000371865|4|1),INTRON(MODIFIER|||||TRABD2B|processed_transcript|CODING|ENST00000435576|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:2:0:0:0,0:32,34:0,0:0,0	90:0:0:0:0,0:83,83:7,7:0,0
1	48848700	.	G	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||248|SPATA6|protein_coding|CODING|ENST00000371841|4|1),INTRON(MODIFIER||||416|SPATA6|protein_coding|CODING|ENST00000396199|8|1),INTRON(MODIFIER||||472|SPATA6|protein_coding|CODING|ENST00000371843|9|1),INTRON(MODIFIER||||488|SPATA6|protein_coding|CODING|ENST00000371847|9|1),INTRON(MODIFIER|||||SPATA6|processed_transcript|CODING|ENST00000490850|4|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	25:6:0:0:0,0:0,0:19,33:0,0	50:10:0:0:7,11:0,1:33,47:0,0
1	51982983	.	C	A	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||259|EPS15|protein_coding|CODING|ENST00000371727|1|1),INTRON(MODIFIER||||762|EPS15|protein_coding|CODING|ENST00000371730|1|1),INTRON(MODIFIER||||896|EPS15|protein_coding|CODING|ENST00000371733|1|1),INTRON(MODIFIER|||||EPS15|ambiguous_orf|CODING|ENST00000465467|1|1),INTRON(MODIFIER|||||EPS15|ambiguous_orf|CODING|ENST00000471391|1|1),UPSTREAM(MODIFIER|||||RP11-191G24.1|ambiguous_orf|NON_CODING|ENST00000426017||1),UPSTREAM(MODIFIER|||||RP11-191G24.1|antisense|NON_CODING|ENST00000415031||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	44:0:0:0:0,0:44,44:0,0:0,0	108:0:0:0:7,7:101,102:0,0:0,0
1	52574799	.	T	C	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:2:0:0:0,0:0,0:0,0:38,42	72:4:0:0:0,0:6,6:0,0:62,73
1	53222506	.	C	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||U2|snRNA|NON_CODING|ENST00000516209||1),INTRON(MODIFIER||||566|ZYG11B|protein_coding|CODING|ENST00000545132|2|1),INTRON(MODIFIER||||674|ZYG11B|protein_coding|CODING|ENST00000443756|2|1),INTRON(MODIFIER||||744|ZYG11B|protein_coding|CODING|ENST00000294353|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:0:1:0:0,0:33,33:0,0:0,0	96:6:1:0:1,1:80,82:0,0:9,13
1	53930360	rs61738842	G	A	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||DMRTB1|processed_transcript|CODING|ENST00000463126||1),SYNONYMOUS_CODING(LOW|SILENT|ccG/ccA|P267|342|DMRTB1|protein_coding|CODING|ENST00000371445|3|1);RSPOS=53930360;GMAF=0.0394;dbSNPBuildID=129;SSR=0;SAO=0;VP=050100000305050516000100;GENEINFO=DMRTB1:63948;WGT=1;VC=SNV;SLO;REF;SYN;ASP;VLD;G5;HD;GNO;KGPhase1;KGPROD;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	44:0:0:0:0,0:0,0:44,44:0,0	93:1:0:0:8,8:0,0:84,85:0,1
1	56131611	.	T	C	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-466L17.1|lincRNA|NON_CODING|ENST00000422374|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	18:0:0:0:0,0:0,0:0,0:18,18	54:1:0:0:0,0:12,13:1,1:40,40
1	57759302	.	A	G	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||213|DAB1|protein_coding|CODING|ENST00000371230|1|1),INTRON(MODIFIER||||555|DAB1|protein_coding|CODING|ENST00000371233|1|1),INTRON(MODIFIER||||555|DAB1|protein_coding|CODING|ENST00000371234|3|1),INTRON(MODIFIER||||555|DAB1|protein_coding|CODING|ENST00000371236|3|1),INTRON(MODIFIER|||||DAB1|processed_transcript|CODING|ENST00000473821|1|1),INTRON(MODIFIER|||||DAB1|processed_transcript|CODING|ENST00000485760|7|1),UPSTREAM(MODIFIER||||203|DAB1|protein_coding|CODING|ENST00000332102||1),UPSTREAM(MODIFIER||||238|DAB1|protein_coding|CODING|ENST00000371232||1),UPSTREAM(MODIFIER||||469|DAB1|protein_coding|CODING|ENST00000439789||1),UPSTREAM(MODIFIER||||537|DAB1|protein_coding|CODING|ENST00000414851||1),UPSTREAM(MODIFIER||||553|DAB1|protein_coding|CODING|ENST00000420954||1),UPSTREAM(MODIFIER||||588|DAB1|protein_coding|CODING|ENST00000371231||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:0:0:0:33,33:0,0:0,0:0,0	105:3:0:0:96,99:0,0:6,6:0,0
1	57972350	.	G	C	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||555|DAB1|protein_coding|CODING|ENST00000371234|3|1),INTRON(MODIFIER||||555|DAB1|protein_coding|CODING|ENST00000371236|3|1),INTRON(MODIFIER|||||DAB1|processed_transcript|CODING|ENST00000485760|7|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:0:0:0:0,0:0,0:32,32:0,0	97:0:0:0:0,0:13,13:84,84:0,0
1	58034706	.	G	A	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||555|DAB1|protein_coding|CODING|ENST00000371234|3|1),INTRON(MODIFIER||||555|DAB1|protein_coding|CODING|ENST00000371236|3|1),INTRON(MODIFIER|||||DAB1|processed_transcript|CODING|ENST00000485760|7|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:0:0:0:0,0:0,0:39,40:0,0	96:0:0:0:11,11:0,0:85,88:0,0
1	58439801	.	T	G	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||555|DAB1|protein_coding|CODING|ENST00000371234|1|1),INTRON(MODIFIER||||555|DAB1|protein_coding|CODING|ENST00000371236|1|1),INTRON(MODIFIER|||||DAB1|processed_transcript|CODING|ENST00000485760|5|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	42:0:0:0:0,0:0,0:0,0:42,42	114:0:0:0:0,0:0,0:10,10:104,104
1	58490853	.	A	C	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||555|DAB1|protein_coding|CODING|ENST00000371234|1|1),INTRON(MODIFIER||||555|DAB1|protein_coding|CODING|ENST00000371236|1|1),INTRON(MODIFIER|||||DAB1|processed_transcript|CODING|ENST00000485760|5|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:1:0:0:38,39:0,0:0,0:0,0	114:1:0:0:105,106:8,8:0,0:0,0
1	59646337	.	G	A	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-470E16.1|lincRNA|NON_CODING|ENST00000436225|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:0:0:0:0,0:0,0:39,39:0,0	94:0:0:0:5,5:0,0:88,89:1,1
1	60682229	.	A	T	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:0:0:0:38,38:0,0:0,0:0,0	107:0:0:0:100,100:1,1:0,0:6,6
1	60831473	.	G	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:1:0:0:0,0:0,0:37,38:0,0	98:0:0:0:5,5:0,0:93,93:0,0
1	62610449	.	A	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1801|INADL|protein_coding|CODING|ENST00000371158|41|1),INTRON(MODIFIER|||||INADL|nonsense_mediated_decay|CODING|ENST00000484937|29|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	28:0:0:0:28,28:0,0:0,0:0,0	54:4:0:0:46,47:0,0:0,0:4,7
1	63629902	.	C	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||RP11-335E6.2|lincRNA|NON_CODING|ENST00000455038||1),INTRON(MODIFIER|||||LINC00466|processed_transcript|NON_CODING|ENST00000447183|8|1),UPSTREAM(MODIFIER|||||LINC00466|processed_transcript|NON_CODING|ENST00000432537||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:0:0:0:0,0:29,29:1,1:0,0	98:0:0:0:0,0:89,89:0,0:9,9
1	64268870	.	C	G	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||393|ROR1|protein_coding|CODING|ENST00000371080|1|1),INTRON(MODIFIER||||937|ROR1|protein_coding|CODING|ENST00000371079|1|1),INTRON(MODIFIER|||||ROR1|processed_transcript|CODING|ENST00000482426|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	42:0:0:0:0,0:42,42:0,0:0,0	115:0:0:0:0,0:102,103:13,13:0,0
1	64600970	.	G	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||388|ROR1|protein_coding|CODING|ENST00000545203|1|1),INTRON(MODIFIER||||393|ROR1|protein_coding|CODING|ENST00000371080|4|1),INTRON(MODIFIER||||937|ROR1|protein_coding|CODING|ENST00000371079|4|1),INTRON(MODIFIER|||||ROR1|processed_transcript|CODING|ENST00000482426|4|1),INTRON(MODIFIER|||||RP11-24J23.2|antisense|NON_CODING|ENST00000424995|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:1:0:0:0,0:0,0:30,31:0,0	99:0:0:0:0,0:6,6:93,93:0,0
1	66631636	.	A	G	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||146|PDE4B|protein_coding|CODING|ENST00000412480|1|1),INTRON(MODIFIER||||721|PDE4B|protein_coding|CODING|ENST00000423207|1|1),INTRON(MODIFIER||||736|PDE4B|protein_coding|CODING|ENST00000329654|3|1),INTRON(MODIFIER||||736|PDE4B|protein_coding|CODING|ENST00000341517|3|1),INTRON(MODIFIER||||736|PDE4B|protein_coding|CODING|ENST00000371049|2|1),INTRON(MODIFIER|||||PDE4B|processed_transcript|CODING|ENST00000526666|2|1),INTRON(MODIFIER|||||PDE4B|processed_transcript|CODING|ENST00000532040|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:0:0:0:36,36:0,0:0,0:0,0	80:0:0:0:70,70:0,0:10,10:0,0
1	66653259	.	C	T	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||146|PDE4B|protein_coding|CODING|ENST00000412480|1|1),INTRON(MODIFIER||||721|PDE4B|protein_coding|CODING|ENST00000423207|1|1),INTRON(MODIFIER||||736|PDE4B|protein_coding|CODING|ENST00000329654|3|1),INTRON(MODIFIER||||736|PDE4B|protein_coding|CODING|ENST00000341517|3|1),INTRON(MODIFIER||||736|PDE4B|protein_coding|CODING|ENST00000371049|2|1),INTRON(MODIFIER|||||PDE4B|processed_transcript|CODING|ENST00000526666|2|1),INTRON(MODIFIER|||||PDE4B|processed_transcript|CODING|ENST00000532040|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	44:0:0:0:0,0:44,44:0,0:0,0	116:1:0:0:0,1:106,109:0,0:9,9
1	66661342	.	A	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||146|PDE4B|protein_coding|CODING|ENST00000412480|1|1),INTRON(MODIFIER||||721|PDE4B|protein_coding|CODING|ENST00000423207|1|1),INTRON(MODIFIER||||736|PDE4B|protein_coding|CODING|ENST00000329654|3|1),INTRON(MODIFIER||||736|PDE4B|protein_coding|CODING|ENST00000341517|3|1),INTRON(MODIFIER||||736|PDE4B|protein_coding|CODING|ENST00000371049|2|1),INTRON(MODIFIER|||||PDE4B|processed_transcript|CODING|ENST00000526666|2|1),INTRON(MODIFIER|||||PDE4B|processed_transcript|CODING|ENST00000532040|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:0:0:0:32,33:0,0:0,0:0,0	93:0:0:0:89,89:0,0:4,4:0,0
1	66703416	.	A	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||146|PDE4B|protein_coding|CODING|ENST00000412480|1|1),INTRON(MODIFIER||||721|PDE4B|protein_coding|CODING|ENST00000423207|1|1),INTRON(MODIFIER||||736|PDE4B|protein_coding|CODING|ENST00000329654|3|1),INTRON(MODIFIER||||736|PDE4B|protein_coding|CODING|ENST00000341517|3|1),INTRON(MODIFIER||||736|PDE4B|protein_coding|CODING|ENST00000371049|2|1),INTRON(MODIFIER|||||PDE4B|processed_transcript|CODING|ENST00000526666|2|1),INTRON(MODIFIER|||||PDE4B|processed_transcript|CODING|ENST00000532040|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	28:0:0:0:28,28:0,0:0,0:0,0	101:1:0:0:91,92:0,0:9,9:0,0
1	66773552	.	C	G	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||146|PDE4B|protein_coding|CODING|ENST00000412480|5|1),INTRON(MODIFIER||||721|PDE4B|protein_coding|CODING|ENST00000423207|5|1),INTRON(MODIFIER||||736|PDE4B|protein_coding|CODING|ENST00000329654|7|1),INTRON(MODIFIER||||736|PDE4B|protein_coding|CODING|ENST00000341517|7|1),INTRON(MODIFIER||||736|PDE4B|protein_coding|CODING|ENST00000371049|6|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:1:0:0:0,0:38,39:0,0:0,0	92:1:0:0:0,0:83,83:8,8:0,1
1	67271635	rs201779714	C	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER||||135|INSL5|protein_coding|CODING|ENST00000304526||1);RSPOS=67271635;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:0:0:0:0,0:32,36:0,0:0,1	61:0:0:0:1,1:54,68:0,0:6,10
1	67451537	.	G	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||565|MIER1|protein_coding|CODING|ENST00000401041||1),INTRON(MODIFIER||||370|MIER1|protein_coding|CODING|ENST00000355977|13|1),INTRON(MODIFIER||||433|MIER1|protein_coding|CODING|ENST00000401042|13|1),INTRON(MODIFIER||||450|MIER1|protein_coding|CODING|ENST00000371016|15|1),INTRON(MODIFIER||||470|MIER1|protein_coding|CODING|ENST00000371018|15|1),INTRON(MODIFIER||||486|MIER1|protein_coding|CODING|ENST00000371014|14|1),UTR_3_PRIME(MODIFIER||||512|MIER1|protein_coding|CODING|ENST00000355356|13|1),UTR_3_PRIME(MODIFIER||||529|MIER1|protein_coding|CODING|ENST00000357692|15|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:1:0:0:0,0:0,0:28,29:1,1	85:5:0:0:1,1:7,8:72,76:0,0
1	67829194	rs111799393	C	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||659|IL12RB2|protein_coding|CODING|ENST00000371000|9|1),INTRON(MODIFIER||||659|IL12RB2|protein_coding|CODING|ENST00000541374|10|1),INTRON(MODIFIER||||776|IL12RB2|protein_coding|CODING|ENST00000544434|9|1),INTRON(MODIFIER||||862|IL12RB2|protein_coding|CODING|ENST00000262345|9|1);RSPOS=67829194;GMAF=0.0078;dbSNPBuildID=132;SSR=0;SAO=0;VP=050000080001040116000100;GENEINFO=IL12RB2:3595;WGT=1;VC=SNV;INT;VLD;GNO;KGPhase1;KGPROD;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:0:0:0:0,0:39,40:0,0:1,1	105:0:0:0:0,0:100,105:0,0:5,5
1	68784627	.	A	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=AA->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	41:2:0:0:39,40:0,1:0,0:0,0	93:1:0:0:84,88:0,0:8,8:0,0
1	70477562	COSM1213919	C	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||RP11-181B18.1|antisense|NON_CODING|ENST00000414132||1),NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|Cgg/Tgg|R325W|1537|LRRC7|protein_coding|CODING|ENST00000035383|10|1),NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|Cgg/Tgg|R330W|1495|LRRC7|protein_coding|CODING|ENST00000310961|13|1),UTR_5_PRIME(MODIFIER||||821|LRRC7|protein_coding|CODING|ENST00000415775|10|1);GENE=LRRC7;STRAND=+;CDS=c.973C>T;AA=p.R325W;CNT=1	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:0:0:0:0,0:30,30:0,0:0,0	115:2:0:0:0,1:103,104:0,0:10,10
1	71725400	.	T	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||ZRANB2-AS2|lincRNA|NON_CODING|ENST00000413421|7|1),INTRON(MODIFIER|||||ZRANB2-AS2|lincRNA|NON_CODING|ENST00000583678|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	27:0:0:0:0,0:0,0:0,0:27,27	80:2:0:0:6,7:0,0:0,0:72,73
1	72118721	.	A	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||226|NEGR1|protein_coding|CODING|ENST00000306821|4|1),INTRON(MODIFIER||||308|NEGR1|protein_coding|CODING|ENST00000434200|3|1),INTRON(MODIFIER||||354|NEGR1|protein_coding|CODING|ENST00000357731|4|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:2:0:0:33,35:0,0:0,0:0,0	127:1:0:0:113,115:0,0:0,0:13,14
1	72687886	.	G	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||308|NEGR1|protein_coding|CODING|ENST00000434200|1|1),INTRON(MODIFIER||||354|NEGR1|protein_coding|CODING|ENST00000357731|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:0:0:0:0,0:0,0:34,34:0,0	108:0:0:0:0,0:1,1:99,99:8,8
1	73332244	.	G	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP4-660H19.1|lincRNA|NON_CODING|ENST00000445976|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:0:0:0:0,0:0,0:33,33:0,0	106:1:0:0:7,7:0,0:98,98:0,1
1	74059438	.	C	A	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	45:0:0:0:0,0:45,45:0,0:0,0	81:1:0:0:5,5:74,75:1,1:0,0
1	74847099	.	C	T	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||187|FPGT-TNNI3K|protein_coding|CODING|ENST00000534020|3|1),INTRON(MODIFIER||||835|FPGT-TNNI3K|protein_coding|CODING|ENST00000326637|17|1),INTRON(MODIFIER||||843|FPGT-TNNI3K|protein_coding|CODING|ENST00000370899|19|1),INTRON(MODIFIER||||936|FPGT-TNNI3K|protein_coding|CODING|ENST00000370891|19|1),INTRON(MODIFIER||||936|FPGT-TNNI3K|protein_coding|CODING|ENST00000557284|19|1),UPSTREAM(MODIFIER|||||RP11-439H8.4|antisense|NON_CODING|ENST00000415549||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:0:0:0:0,0:39,39:0,0:0,0	104:1:0:0:0,0:95,97:1,1:7,7
1	77048384	.	G	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||305|ST6GALNAC3|protein_coding|CODING|ENST00000328299|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:0:0:0:0,0:0,0:34,34:0,0	86:1:0:0:0,0:0,0:79,80:6,6
1	78327733	.	C	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=EXON(MODIFIER|||||FAM73A|processed_transcript|CODING|ENST00000476203|6|1),INTRON(MODIFIER||||595|FAM73A|protein_coding|CODING|ENST00000443751|11|1),INTRON(MODIFIER||||632|FAM73A|protein_coding|CODING|ENST00000370791|12|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:0:0:0:0,0:34,36:0,0:0,0	99:2:0:0:0,0:91,95:1,1:5,6
1	78492551	.	G	T	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||GIPC2|processed_transcript|CODING|ENST00000476882|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:0:0:0:0,0:0,0:40,40:0,0	110:0:0:0:0,0:0,0:100,101:10,10
1	79126995	.	C	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||194|IFI44|protein_coding|CODING|ENST00000438486||1),INTRON(MODIFIER||||444|IFI44|protein_coding|CODING|ENST00000370747|7|1),INTRON(MODIFIER|||||IFI44|processed_transcript|CODING|ENST00000470323|6|1),INTRON(MODIFIER|||||IFI44|processed_transcript|CODING|ENST00000472152|5|1),INTRON(MODIFIER|||||IFI44|processed_transcript|CODING|ENST00000485662|2|1),INTRON(MODIFIER|||||IFI44|processed_transcript|CODING|ENST00000495254|5|1),UPSTREAM(MODIFIER|||||IFI44|processed_transcript|CODING|ENST00000476911||1),UPSTREAM(MODIFIER|||||RP4-641G12.3|processed_pseudogene|NON_CODING|ENST00000427236||1),UTR_3_PRIME(MODIFIER||||129|IFI44|protein_coding|CODING|ENST00000545124|6|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	26:1:0:0:0,0:25,27:0,0:0,0	96:1:0:0:0,0:83,85:0,0:12,12
1	79783434	.	T	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	13:0:0:0:0,0:0,0:0,0:13,13	80:0:0:0:0,0:17,18:0,0:63,65
1	80410302	.	G	A	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:0:0:0:0,0:0,0:37,37:0,0	119:0:0:0:6,6:0,0:112,113:1,1
1	81366208	.	C	G	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:1:0:0:0,0:34,35:0,0:0,0	98:1:0:0:0,1:89,90:8,8:0,0
1	82605155	.	G	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:0:0:0:0,0:0,0:32,32:0,0	107:1:0:0:0,0:0,0:95,96:11,11
1	82643685	.	C	T	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:0:0:0:0,0:36,36:0,0:0,0	102:1:0:0:0,0:92,93:0,0:9,9
1	82838242	.	G	C	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:0:0:0:0,0:0,0:37,37:0,0	92:1:0:0:0,0:5,5:85,86:1,1
1	83024667	.	C	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:0:0:0:0,0:35,36:0,0:0,0	110:0:0:0:0,0:103,103:0,0:7,7
1	84591665	rs148928162	C	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||257|PRKACB|protein_coding|CODING|ENST00000370688|1|1),INTRON(MODIFIER||||351|PRKACB|protein_coding|CODING|ENST00000370689|1|1);RSPOS=84591665;GMAF=0.0037;dbSNPBuildID=134;SSR=0;SAO=0;VP=050000080005000014000100;GENEINFO=PRKACB:5567;WGT=1;VC=SNV;INT;ASP;KGPhase1;KGPROD	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:1:0:0:0,0:34,36:0,0:0,0	81:1:0:0:0,1:75,76:1,1:4,5
1	85832350	.	T	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||182|DDAH1|protein_coding|CODING|ENST00000535924|2|1),INTRON(MODIFIER||||185|DDAH1|protein_coding|CODING|ENST00000542148|1|1),INTRON(MODIFIER||||192|DDAH1|protein_coding|CODING|ENST00000426972|1|1),INTRON(MODIFIER||||285|DDAH1|protein_coding|CODING|ENST00000284031|1|1),INTRON(MODIFIER||||285|DDAH1|protein_coding|CODING|ENST00000539042|1|1),INTRON(MODIFIER|||||DDAH1|processed_transcript|CODING|ENST00000474200|2|1),INTRON(MODIFIER|||||DDAH1|processed_transcript|CODING|ENST00000483110|2|1),INTRON(MODIFIER|||||RP11-131L23.1|processed_transcript|NON_CODING|ENST00000426125|1|1),INTRON(MODIFIER|||||RP11-131L23.1|processed_transcript|NON_CODING|ENST00000427819|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:1:0:0:0,1:0,0:0,0:29,29	90:1:0:0:0,0:10,11:0,0:79,79
1	86340712	.	C	T	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1693|COL24A1|protein_coding|CODING|ENST00000436319|34|1),INTRON(MODIFIER||||1714|COL24A1|protein_coding|CODING|ENST00000370571|34|1),INTRON(MODIFIER|||||COL24A1|nonsense_mediated_decay|CODING|ENST00000426639|35|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:0:0:0:0,0:36,36:0,0:0,0	92:0:0:0:1,1:83,83:0,0:8,8
1	86970511	.	G	A	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||914|CLCA1|protein_coding|CODING|ENST00000234701||1),DOWNSTREAM(MODIFIER||||914|CLCA1|protein_coding|CODING|ENST00000394711||1),DOWNSTREAM(MODIFIER|||||CLCA1|processed_transcript|CODING|ENST00000495894||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:0:0:0:0,0:0,0:38,38:0,0	97:2:0:0:9,9:0,0:86,88:0,0
1	88377870	.	A	G	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:0:0:0:37,38:0,0:0,0:0,0	99:2:0:0:83,84:0,0:14,15:0,0
1	88377948	.	C	A	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:0:0:0:0,0:32,32:0,0:0,0	100:1:0:0:13,13:85,86:0,0:1,1
1	88377998	.	A	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:0:0:0:30,30:0,0:0,0:0,0	107:1:0:0:92,93:13,13:1,1:0,0
1	89216621	.	C	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||604|PKN2|protein_coding|CODING|ENST00000316005|2|1),INTRON(MODIFIER||||827|PKN2|protein_coding|CODING|ENST00000370505|1|1),INTRON(MODIFIER||||936|PKN2|protein_coding|CODING|ENST00000370513|2|1),INTRON(MODIFIER||||984|PKN2|protein_coding|CODING|ENST00000370521|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:0:0:0:0,0:35,35:0,0:0,0	110:0:0:0:5,5:105,105:0,0:0,0
1	91415844	rs112904027	A	G	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=AA->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER||||105|ZNF644|protein_coding|CODING|ENST00000347275|2|1),INTRON(MODIFIER||||105|ZNF644|protein_coding|CODING|ENST00000361321|2|1),INTRON(MODIFIER||||1327|ZNF644|protein_coding|CODING|ENST00000337393|2|1),INTRON(MODIFIER||||1327|ZNF644|protein_coding|CODING|ENST00000370440|2|1),INTRON(MODIFIER|||||ZNF644|processed_transcript|CODING|ENST00000467231|3|1),INTRON(MODIFIER|||||ZNF644|processed_transcript|CODING|ENST00000498303|2|1);RSPOS=91415844;dbSNPBuildID=132;SSR=0;SAO=0;VP=050000080001000102000100;GENEINFO=ZNF644:84146;WGT=1;VC=SNV;INT;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	27:0:0:0:26,28:1,1:0,0:0,0	34:1:0:0:27,31:0,0:6,6:0,0
1	91934326	.	A	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	52:2:0:0:50,53:0,0:0,0:0,0	117:2:0:0:107,109:0,0:7,7:1,1
1	96005048	.	A	T	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-286B14.1|lincRNA|NON_CODING|ENST00000432146|1|1),INTRON(MODIFIER|||||RP11-286B14.1|lincRNA|NON_CODING|ENST00000456933|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	44:1:0:0:43,45:0,0:0,0:0,0	104:1:0:0:93,94:0,0:0,0:10,10
1	96005049	.	A	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=AA->AC;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER|||||RP11-286B14.1|lincRNA|NON_CODING|ENST00000432146|1|1),INTRON(MODIFIER|||||RP11-286B14.1|lincRNA|NON_CODING|ENST00000456933|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	44:1:0:0:43,44:0,1:0,0:0,0	103:1:0:0:92,93:10,10:0,0:0,0
1	97296924	.	A	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	27:0:0:0:27,27:0,0:0,0:0,0	101:1:0:0:92,93:0,0:8,8:0,0
1	97423599	.	T	A	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:0:0:0:0,0:0,0:0,0:36,36	91:0:0:0:8,8:0,0:0,0:83,83
1	97999198	.	G	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1025|DPYD|protein_coding|CODING|ENST00000370192|12|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:0:0:0:0,0:0,0:30,30:0,0	100:3:0:0:0,0:0,0:91,94:6,6
1	98586151	.	A	G	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:0:0:0:38,38:0,0:0,0:0,0	112:0:0:0:105,106:0,0:7,7:0,0
1	98601699	.	T	A	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:0:0:0:0,0:0,0:0,0:38,38	117:3:0:0:6,6:0,1:0,0:108,110
1	98694797	.	G	A	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP5-1070A16.1|processed_transcript|NON_CODING|ENST00000418344|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:1:0:0:0,0:0,0:35,36:0,0	85:1:0:0:9,9:0,0:75,76:0,0
1	98994358	.	T	C	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	43:0:0:0:0,0:0,0:0,0:43,43	133:0:0:0:0,0:5,5:0,0:128,128
1	99288857	.	T	A	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:0:0:0:0,0:0,0:0,0:36,36	104:1:0:0:8,8:0,0:0,0:95,96
1	99587402	.	A	T	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP5-896L10.1|processed_transcript|NON_CODING|ENST00000425113|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	42:0:0:0:42,42:0,0:0,0:0,0	111:0:0:0:101,101:0,0:0,0:10,11
1	103670525	.	T	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:0:0:0:0,0:0,0:0,0:30,30	95:1:0:0:0,0:5,5:0,0:89,90
1	104520876	.	C	G	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:0:0:0:0,0:36,36:0,0:0,0	106:0:0:0:0,0:97,97:9,9:0,0
1	105807035	.	T	C	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=TT->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:0:0:0:0,0:0,0:0,0:40,40	90:2:0:0:0,0:4,4:0,0:84,86
1	105948754	.	G	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	28:0:0:0:0,0:0,0:28,28:0,0	96:1:0:0:11,11:1,1:83,84:0,0
1	106235510	.	G	C	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	42:0:0:0:0,0:0,0:42,42:0,0	108:2:0:0:0,0:10,11:96,97:0,0
1	106739199	.	C	A	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:0:0:0:0,0:34,34:0,0:1,1	110:2:0:0:9,11:99,99:0,0:0,0
1	107066953	.	A	G	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:0:0:0:38,38:0,0:0,0:0,0	101:1:0:0:89,90:0,0:11,11:0,0
1	107191704	.	C	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:0:0:0:0,0:35,35:0,0:0,0	109:3:0:0:0,0:96,100:0,0:10,10
1	107670005	.	G	A	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:0:0:0:0,0:0,0:38,38:0,0	111:3:0:0:9,9:0,0:99,102:0,0
1	107769721	.	C	T	.	PASS	NT=ref;QSS=25;QSS_NT=25;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||364|NTNG1|protein_coding|CODING|ENST00000294649|2|1),INTRON(MODIFIER||||364|NTNG1|protein_coding|CODING|ENST00000370076|2|1),INTRON(MODIFIER||||438|NTNG1|protein_coding|CODING|ENST00000370074|2|1),INTRON(MODIFIER||||460|NTNG1|protein_coding|CODING|ENST00000370067|2|1),INTRON(MODIFIER||||460|NTNG1|protein_coding|CODING|ENST00000370070|2|1),INTRON(MODIFIER||||480|NTNG1|protein_coding|CODING|ENST00000370066|1|1),INTRON(MODIFIER||||480|NTNG1|protein_coding|CODING|ENST00000370071|2|1),INTRON(MODIFIER||||494|NTNG1|protein_coding|CODING|ENST00000370065|1|1),INTRON(MODIFIER||||494|NTNG1|protein_coding|CODING|ENST00000370072|2|1),INTRON(MODIFIER||||505|NTNG1|protein_coding|CODING|ENST00000370061|2|1),INTRON(MODIFIER||||539|NTNG1|protein_coding|CODING|ENST00000370068|2|1),INTRON(MODIFIER||||539|NTNG1|protein_coding|CODING|ENST00000370073|2|1),INTRON(MODIFIER||||539|NTNG1|protein_coding|CODING|ENST00000542803|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	47:2:0:0:0,0:45,47:0,0:0,0	110:2:0:0:0,1:93,95:0,0:15,15
1	110249829	.	A	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||191|GSTM2|protein_coding|CODING|ENST00000460717||1),EXON(MODIFIER|||||GSTM2|TEC|CODING|ENST00000581919|1|1),INTRON(MODIFIER||||220|GSTM2|protein_coding|CODING|ENST00000369831|7|1),INTRON(MODIFIER||||85|GSTM1|protein_coding|CODING|ENST00000483399|4|1),INTRON(MODIFIER|||||RP4-735C1.4|processed_transcript|NON_CODING|ENST00000429410|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:1:0:0:32,33:0,0:0,0:0,0	104:0:0:0:98,99:1,1:0,0:5,7
1	112589923	.	G	A	.	PASS	NT=ref;QSS=23;QSS_NT=23;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	44:0:0:0:0,0:0,0:44,44:0,0	86:2:0:0:8,8:0,0:76,78:0,0
1	113182509	.	G	T	.	PASS	NT=ref;QSS=27;QSS_NT=27;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||286|CAPZA1|protein_coding|CODING|ENST00000263168|1|1),INTRON(MODIFIER|||||CAPZA1|processed_transcript|CODING|ENST00000476936|1|1),INTRON(MODIFIER|||||CAPZA1|processed_transcript|CODING|ENST00000485542|1|1),INTRON(MODIFIER|||||CAPZA1|processed_transcript|CODING|ENST00000498626|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	58:1:0:0:0,0:0,1:57,96:0,1	116:8:0:0:0,0:0,1:100,169:8,16
1	113352111	.	T	G	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:2:0:0:0,0:0,0:0,0:38,41	128:2:0:0:0,0:0,0:11,11:115,117
1	113539506	.	A	G	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-31F15.1|processed_transcript|NON_CODING|ENST00000435800|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	44:0:0:0:43,43:1,1:0,0:0,0	103:3:0:0:91,94:1,1:8,8:0,0
1	113745345	.	C	T	.	PASS	NT=ref;QSS=25;QSS_NT=25;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||RP11-389O22.5|processed_pseudogene|NON_CODING|ENST00000412567||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	49:0:0:0:0,0:49,50:0,0:0,0	104:0:0:0:0,0:94,94:0,0:10,10
1	116169667	rs181395058	A	T	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=116169667;GMAF=0.0005;dbSNPBuildID=135;SSR=0;SAO=0;VP=050000000005000014000100;WGT=1;VC=SNV;ASP;KGPhase1;KGPROD	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:0:0:0:37,37:0,0:0,0:0,0	108:1:0:0:97,98:0,0:0,0:10,14
1	116169673	rs184202978	G	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=116169673;GMAF=0.0018;dbSNPBuildID=135;SSR=0;SAO=0;VP=050000000005000014000100;WGT=1;VC=SNV;ASP;KGPhase1;KGPROD	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:0:0:0:0,0:0,0:37,37:0,0	110:1:0:0:9,14:0,0:100,100:0,0
1	116395622	.	G	A	.	PASS	NT=ref;QSS=24;QSS_NT=24;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||RP11-485H8.2|processed_pseudogene|NON_CODING|ENST00000452680||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	48:0:0:0:0,0:0,0:47,47:1,1	104:1:0:0:8,8:0,0:95,97:0,0
1	117186158	.	G	T	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1194|IGSF3|protein_coding|CODING|ENST00000369486|2|1),INTRON(MODIFIER||||1214|IGSF3|protein_coding|CODING|ENST00000318837|1|1),INTRON(MODIFIER||||1214|IGSF3|protein_coding|CODING|ENST00000369483|2|1),INTRON(MODIFIER|||||IGSF3|processed_transcript|CODING|ENST00000481589|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	50:0:0:0:0,0:0,0:50,51:0,0	109:1:0:0:0,0:0,0:103,104:5,5
1	119096836	.	G	A	.	PASS	NT=ref;QSS=23;QSS_NT=23;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	46:0:0:0:0,0:0,0:46,47:0,0	111:2:0:0:9,9:0,0:100,102:0,0
1	119138223	.	C	A	.	PASS	NT=ref;QSS=33;QSS_NT=33;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	66:0:0:0:0,0:65,65:1,1:0,0	130:1:0:0:17,17:112,113:0,0:0,0
1	120635999	rs199743827	C	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=120635999;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	46:1:0:0:0,0:44,47:0,0:1,1	115:1:0:0:0,0:107,116:0,0:7,9
1	121363783	.	G	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->GT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:1:0:0:0,0:0,0:38,60:0,0	114:1:0:0:0,1:0,1:108,151:5,6
1	121374873	.	A	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=AA->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:0:0:0:38,40:0,0:0,1:0,0	102:1:0:0:92,103:0,0:9,14:0,0
1	121401858	.	A	G	.	PASS	NT=ref;QSS=26;QSS_NT=26;SGT=AA->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	115:1:0:0:114,163:0,0:0,3:0,0	288:2:0:0:273,394:0,0:13,24:0,0
1	121481934	.	A	C	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	67:11:0:0:55,177:1,9:0,0:0,0	175:25:0:0:142,416:8,22:0,0:0,4
1	142553632	rs80335282	C	T	.	PASS	NT=ref;QSS=34;QSS_NT=34;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||AL583842.1|lincRNA|NON_CODING|ENST00000445662|1|1);RSPOS=142553632;dbSNPBuildID=131;SSR=0;SAO=0;VP=050000000005040102000100;WGT=1;VC=SNV;ASP;VLD;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	113:0:0:0:0,0:112,161:0,0:1,4	349:3:0:0:0,0:334,499:0,0:12,32
1	142577963	.	C	T	.	PASS	NT=ref;QSS=32;QSS_NT=32;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||AL583842.2|lincRNA|NON_CODING|ENST00000415979|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	78:3:0:0:0,0:75,81:0,0:0,1	208:5:0:0:0,0:195,209:0,0:8,20
1	142578000	.	G	A	.	PASS	NT=ref;QSS=31;QSS_NT=31;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||AL583842.2|lincRNA|NON_CODING|ENST00000415979|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	71:1:0:0:0,0:0,0:69,73:1,1	203:5:0:0:9,16:1,1:188,202:0,1
1	142578005	.	G	A	.	PASS	NT=ref;QSS=33;QSS_NT=33;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||AL583842.2|lincRNA|NON_CODING|ENST00000415979|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	72:2:0:0:0,0:0,0:70,74:0,0	207:2:0:0:9,16:0,0:196,209:0,0
1	142579883	.	G	T	.	PASS	NT=ref;QSS=44;QSS_NT=44;SGT=GG->GT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER|||||AL583842.2|lincRNA|NON_CODING|ENST00000415979|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	97:1:0:0:0,0:0,0:96,101:0,1	290:0:0:0:0,0:0,0:277,287:13,18
1	142625313	rs200442702	A	T	.	PASS	NT=ref;QSS=30;QSS_NT=30;SGT=AA->AT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=DOWNSTREAM(MODIFIER|||||AL583842.3|processed_transcript|NON_CODING|ENST00000400755||1),DOWNSTREAM(MODIFIER|||||AL583842.3|processed_transcript|NON_CODING|ENST00000412092||1),DOWNSTREAM(MODIFIER|||||AL583842.3|processed_transcript|NON_CODING|ENST00000413650||1),DOWNSTREAM(MODIFIER|||||AL583842.3|processed_transcript|NON_CODING|ENST00000446205||1),INTRON(MODIFIER|||||AL583842.3|processed_transcript|NON_CODING|ENST00000411746|2|1),INTRON(MODIFIER|||||AL583842.3|processed_transcript|NON_CODING|ENST00000426408|2|1),INTRON(MODIFIER|||||AL583842.6|processed_transcript|NON_CODING|ENST00000369381|7|1);RSPOS=142625313;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	109:2:0:0:106,120:0,0:1,1:0,2	338:10:0:0:317,348:0,0:0,0:11,20
1	142680516	.	C	T	.	PASS	NT=ref;QSS=37;QSS_NT=37;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||AL583842.3|processed_transcript|NON_CODING|ENST00000411746|2|1),INTRON(MODIFIER|||||AL583842.6|processed_transcript|NON_CODING|ENST00000369381|6|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	87:10:0:0:0,0:77,98:0,0:0,0	200:8:0:0:0,0:182,217:0,0:10,16
1	142680597	.	C	A	.	PASS	NT=ref;QSS=41;QSS_NT=41;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||AL583842.3|processed_transcript|NON_CODING|ENST00000411746|2|1),INTRON(MODIFIER|||||AL583842.6|processed_transcript|NON_CODING|ENST00000369381|6|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	88:3:0:0:0,0:85,102:0,0:0,0	191:6:0:0:9,16:176,216:0,0:0,0
1	142682240	rs201178844	C	A	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=CC->AC;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER|||||AL583842.3|processed_transcript|NON_CODING|ENST00000411746|2|1),INTRON(MODIFIER|||||AL583842.6|processed_transcript|NON_CODING|ENST00000369381|6|1);RSPOS=142682240;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	61:0:0:0:0,1:61,64:0,0:0,0	126:1:0:0:12,12:113,132:0,0:0,0
1	142682356	rs199882968	C	T	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=CC->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER|||||AL583842.3|processed_transcript|NON_CODING|ENST00000411746|2|1),INTRON(MODIFIER|||||AL583842.6|processed_transcript|NON_CODING|ENST00000369381|6|1);RSPOS=142682356;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	59:1:0:0:0,0:58,61:0,0:0,1	127:2:0:0:0,0:114,127:0,0:11,13
1	142682505	.	T	C	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=TT->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER|||||AL583842.3|processed_transcript|NON_CODING|ENST00000411746|2|1),INTRON(MODIFIER|||||AL583842.6|processed_transcript|NON_CODING|ENST00000369381|6|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	51:0:0:0:0,0:0,1:0,0:51,55	129:0:0:0:0,0:16,19:1,1:112,128
1	142696457	.	A	G	.	PASS	NT=ref;QSS=29;QSS_NT=29;SGT=AA->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=DOWNSTREAM(MODIFIER|||||AL583842.7|unprocessed_pseudogene|NON_CODING|ENST00000418064||1),INTRON(MODIFIER|||||AL583842.3|processed_transcript|NON_CODING|ENST00000411746|2|1),INTRON(MODIFIER|||||AL583842.6|processed_transcript|NON_CODING|ENST00000369381|5|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	63:0:0:0:63,76:0,0:0,3:0,0	179:1:0:0:170,209:0,0:8,22:0,0
1	142701286	rs200667043	A	G	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||AL583842.3|processed_transcript|NON_CODING|ENST00000411746|2|1),INTRON(MODIFIER|||||AL583842.6|processed_transcript|NON_CODING|ENST00000369381|2|1),INTRON(MODIFIER|||||AL583842.7|unprocessed_pseudogene|NON_CODING|ENST00000418064|1|1);RSPOS=142701286;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000080005000002000100;WGT=1;VC=SNV;INT;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:0:0:0:32,36:0,0:0,0:0,0	89:0:0:0:82,97:0,0:7,13:0,0
1	142705021	.	C	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||AL583842.3|processed_transcript|NON_CODING|ENST00000411746|2|1),INTRON(MODIFIER|||||AL583842.6|processed_transcript|NON_CODING|ENST00000369381|2|1),INTRON(MODIFIER|||||AL583842.7|unprocessed_pseudogene|NON_CODING|ENST00000418064|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	48:0:0:0:0,0:46,55:2,3:0,0	133:3:0:0:2,2:102,118:26,40:0,0
1	142711369	.	G	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||ANKRD20A12P|unprocessed_pseudogene|NON_CODING|ENST00000416817||1),EXON(MODIFIER|||||AL583842.6|processed_transcript|NON_CODING|ENST00000369381|2|1),INTRON(MODIFIER|||||AL583842.3|processed_transcript|NON_CODING|ENST00000411746|2|1),INTRON(MODIFIER|||||AL583842.7|unprocessed_pseudogene|NON_CODING|ENST00000418064|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:0:0:0:0,0:0,0:29,36:0,0	106:0:0:0:11,15:0,0:95,117:0,0
1	142711590	.	C	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||ANKRD20A12P|unprocessed_pseudogene|NON_CODING|ENST00000416817||1),INTRON(MODIFIER|||||AL583842.3|processed_transcript|NON_CODING|ENST00000411746|2|1),INTRON(MODIFIER|||||AL583842.6|processed_transcript|NON_CODING|ENST00000369381|1|1),INTRON(MODIFIER|||||AL583842.7|unprocessed_pseudogene|NON_CODING|ENST00000418064|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:1:0:0:0,1:34,35:1,1:0,0	120:3:0:0:1,1:108,114:0,0:8,10
1	142711874	.	A	C	.	PASS	NT=ref;QSS=27;QSS_NT=27;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||ANKRD20A12P|unprocessed_pseudogene|NON_CODING|ENST00000416817||1),INTRON(MODIFIER|||||AL583842.3|processed_transcript|NON_CODING|ENST00000411746|2|1),INTRON(MODIFIER|||||AL583842.6|processed_transcript|NON_CODING|ENST00000369381|1|1),INTRON(MODIFIER|||||AL583842.7|unprocessed_pseudogene|NON_CODING|ENST00000418064|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	54:0:0:0:54,57:0,0:0,0:0,0	153:2:0:0:137,140:14,17:0,0:0,0
1	142711892	.	T	A	.	PASS	NT=ref;QSS=27;QSS_NT=27;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||ANKRD20A12P|unprocessed_pseudogene|NON_CODING|ENST00000416817||1),INTRON(MODIFIER|||||AL583842.3|processed_transcript|NON_CODING|ENST00000411746|2|1),INTRON(MODIFIER|||||AL583842.6|processed_transcript|NON_CODING|ENST00000369381|1|1),INTRON(MODIFIER|||||AL583842.7|unprocessed_pseudogene|NON_CODING|ENST00000418064|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	53:0:0:0:0,0:0,0:0,0:53,55	150:1:0:0:15,18:0,0:0,0:134,136
1	142711926	.	G	C	.	PASS	NT=ref;QSS=24;QSS_NT=24;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||ANKRD20A12P|unprocessed_pseudogene|NON_CODING|ENST00000416817||1),INTRON(MODIFIER|||||AL583842.3|processed_transcript|NON_CODING|ENST00000411746|2|1),INTRON(MODIFIER|||||AL583842.6|processed_transcript|NON_CODING|ENST00000369381|1|1),INTRON(MODIFIER|||||AL583842.7|unprocessed_pseudogene|NON_CODING|ENST00000418064|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	47:0:0:0:0,0:0,0:47,49:0,0	159:2:0:0:0,0:15,17:142,144:0,0
1	142725744	rs77367280	T	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||AL583842.3|processed_transcript|NON_CODING|ENST00000411746|3|1),INTRON(MODIFIER|||||ANKRD20A12P|unprocessed_pseudogene|NON_CODING|ENST00000416817|3|1);RSPOS=142725744;dbSNPBuildID=131;SSR=0;SAO=0;VP=050000000009000102000100;WGT=1;VC=SNV;CFL;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:0:0:0:0,0:0,0:0,0:36,37	107:2:0:0:0,0:7,8:1,1:97,99
1	142813243	.	C	G	.	PASS	NT=ref;QSS=27;QSS_NT=27;SGT=CC->CG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=EXON(MODIFIER|||||ANKRD20A14P|unprocessed_pseudogene|NON_CODING|ENST00000457776|5|1),INTRON(MODIFIER|||||RP11-423O2.5|processed_transcript|NON_CODING|ENST00000423385|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	77:0:0:0:3,3:74,80:0,0:0,0	241:0:0:0:3,3:227,239:11,12:0,0
1	142853621	rs189922110	G	A	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=142853621;dbSNPBuildID=135;SSR=0;SAO=0;VP=050000080005000002000100;GENEINFO=LOC100652887:100652887;WGT=1;VC=SNV;INT;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	45:0:0:0:0,1:0,0:45,56:0,0	85:5:0:0:11,24:0,0:69,97:0,0
1	142865337	.	A	C	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:0:0:0:34,81:0,0:0,0:0,0	62:1:0:0:54,139:7,8:0,0:0,0
1	142884123	.	C	T	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=CC->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	61:1:0:0:0,0:60,77:0,0:0,0	203:1:0:0:0,0:191,253:0,0:11,12
1	143140928	.	G	C	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=GG->CG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER|||||BX571672.1|processed_transcript|NON_CODING|ENST00000428930|1|1),INTRON(MODIFIER|||||BX571672.1|processed_transcript|NON_CODING|ENST00000436680|1|1),INTRON(MODIFIER|||||BX571672.1|processed_transcript|NON_CODING|ENST00000438000|1|1),INTRON(MODIFIER|||||BX571672.1|processed_transcript|NON_CODING|ENST00000447407|1|1),INTRON(MODIFIER|||||BX571672.1|processed_transcript|NON_CODING|ENST00000454861|1|1),INTRON(MODIFIER|||||BX571672.2|lincRNA|NON_CODING|ENST00000422129|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	88:0:0:0:0,0:0,4:88,93:0,0	247:2:0:0:0,0:16,18:229,241:0,1
1	143160105	.	G	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=DOWNSTREAM(MODIFIER|||||BX571672.1|processed_transcript|NON_CODING|ENST00000454861||1),INTRON(MODIFIER|||||BX571672.1|processed_transcript|NON_CODING|ENST00000428930|1|1),INTRON(MODIFIER|||||BX571672.1|processed_transcript|NON_CODING|ENST00000436680|1|1),INTRON(MODIFIER|||||BX571672.1|processed_transcript|NON_CODING|ENST00000438000|1|1),INTRON(MODIFIER|||||BX571672.1|processed_transcript|NON_CODING|ENST00000447407|1|1),INTRON(MODIFIER|||||BX571672.2|lincRNA|NON_CODING|ENST00000422129|1|1),INTRON(MODIFIER|||||BX571672.4|lincRNA|NON_CODING|ENST00000424474|1|1),UPSTREAM(MODIFIER|||||MIR3118-2|miRNA|NON_CODING|ENST00000582397||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	46:0:0:0:0,1:0,0:46,49:0,0	148:0:0:0:9,10:0,0:138,147:1,1
1	143174936	.	C	T	.	PASS	NT=ref;QSS=27;QSS_NT=27;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||BX571672.4|lincRNA|NON_CODING|ENST00000424474||1),INTRON(MODIFIER|||||BX571672.1|processed_transcript|NON_CODING|ENST00000428930|1|1),INTRON(MODIFIER|||||BX571672.1|processed_transcript|NON_CODING|ENST00000436680|1|1),INTRON(MODIFIER|||||BX571672.1|processed_transcript|NON_CODING|ENST00000438000|1|1),INTRON(MODIFIER|||||BX571672.1|processed_transcript|NON_CODING|ENST00000447407|1|1),INTRON(MODIFIER|||||BX571672.2|lincRNA|NON_CODING|ENST00000422129|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	63:0:0:0:0,0:62,66:0,0:1,1	175:0:0:0:0,0:163,183:0,0:12,14
1	143188520	.	T	C	.	PASS	NT=ref;QSS=36;QSS_NT=36;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||BX571672.2|lincRNA|NON_CODING|ENST00000412204||1),DOWNSTREAM(MODIFIER|||||BX571672.2|lincRNA|NON_CODING|ENST00000447389||1),EXON(MODIFIER|||||BX571672.2|lincRNA|NON_CODING|ENST00000413897|6|1),EXON(MODIFIER|||||BX571672.2|lincRNA|NON_CODING|ENST00000420598|5|1),EXON(MODIFIER|||||BX571672.2|lincRNA|NON_CODING|ENST00000437267|2|1),INTRON(MODIFIER|||||BX571672.1|processed_transcript|NON_CODING|ENST00000428930|1|1),INTRON(MODIFIER|||||BX571672.1|processed_transcript|NON_CODING|ENST00000436680|1|1),INTRON(MODIFIER|||||BX571672.1|processed_transcript|NON_CODING|ENST00000438000|1|1),INTRON(MODIFIER|||||BX571672.1|processed_transcript|NON_CODING|ENST00000447407|1|1),INTRON(MODIFIER|||||BX571672.2|lincRNA|NON_CODING|ENST00000422129|1|1),UPSTREAM(MODIFIER|||||BX571672.3|lincRNA|NON_CODING|ENST00000425124||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	112:0:0:0:0,0:1,3:0,0:111,140	288:3:0:0:0,0:11,13:0,0:274,333
1	143188521	.	G	A	.	PASS	NT=ref;QSS=29;QSS_NT=29;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||BX571672.2|lincRNA|NON_CODING|ENST00000412204||1),DOWNSTREAM(MODIFIER|||||BX571672.2|lincRNA|NON_CODING|ENST00000447389||1),EXON(MODIFIER|||||BX571672.2|lincRNA|NON_CODING|ENST00000413897|6|1),EXON(MODIFIER|||||BX571672.2|lincRNA|NON_CODING|ENST00000420598|5|1),EXON(MODIFIER|||||BX571672.2|lincRNA|NON_CODING|ENST00000437267|2|1),INTRON(MODIFIER|||||BX571672.1|processed_transcript|NON_CODING|ENST00000428930|1|1),INTRON(MODIFIER|||||BX571672.1|processed_transcript|NON_CODING|ENST00000436680|1|1),INTRON(MODIFIER|||||BX571672.1|processed_transcript|NON_CODING|ENST00000438000|1|1),INTRON(MODIFIER|||||BX571672.1|processed_transcript|NON_CODING|ENST00000447407|1|1),INTRON(MODIFIER|||||BX571672.2|lincRNA|NON_CODING|ENST00000422129|1|1),UPSTREAM(MODIFIER|||||BX571672.3|lincRNA|NON_CODING|ENST00000425124||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	112:0:0:0:1,3:0,0:111,140:0,0	285:3:0:0:10,12:0,0:272,331:0,0
1	143188554	.	C	G	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=CC->CG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=DOWNSTREAM(MODIFIER|||||BX571672.2|lincRNA|NON_CODING|ENST00000412204||1),DOWNSTREAM(MODIFIER|||||BX571672.2|lincRNA|NON_CODING|ENST00000447389||1),EXON(MODIFIER|||||BX571672.2|lincRNA|NON_CODING|ENST00000413897|6|1),EXON(MODIFIER|||||BX571672.2|lincRNA|NON_CODING|ENST00000420598|5|1),EXON(MODIFIER|||||BX571672.2|lincRNA|NON_CODING|ENST00000437267|2|1),INTRON(MODIFIER|||||BX571672.1|processed_transcript|NON_CODING|ENST00000428930|1|1),INTRON(MODIFIER|||||BX571672.1|processed_transcript|NON_CODING|ENST00000436680|1|1),INTRON(MODIFIER|||||BX571672.1|processed_transcript|NON_CODING|ENST00000438000|1|1),INTRON(MODIFIER|||||BX571672.1|processed_transcript|NON_CODING|ENST00000447407|1|1),INTRON(MODIFIER|||||BX571672.2|lincRNA|NON_CODING|ENST00000422129|1|1),UPSTREAM(MODIFIER|||||BX571672.3|lincRNA|NON_CODING|ENST00000425124||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	80:0:0:0:0,0:80,107:0,0:0,0	216:3:0:0:0,0:204,259:9,10:0,1
1	143188555	rs199615651	A	G	.	PASS	NT=ref;QSS=32;QSS_NT=32;SGT=AA->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=DOWNSTREAM(MODIFIER|||||BX571672.2|lincRNA|NON_CODING|ENST00000412204||1),DOWNSTREAM(MODIFIER|||||BX571672.2|lincRNA|NON_CODING|ENST00000447389||1),EXON(MODIFIER|||||BX571672.2|lincRNA|NON_CODING|ENST00000413897|6|1),EXON(MODIFIER|||||BX571672.2|lincRNA|NON_CODING|ENST00000420598|5|1),EXON(MODIFIER|||||BX571672.2|lincRNA|NON_CODING|ENST00000437267|2|1),INTRON(MODIFIER|||||BX571672.1|processed_transcript|NON_CODING|ENST00000428930|1|1),INTRON(MODIFIER|||||BX571672.1|processed_transcript|NON_CODING|ENST00000436680|1|1),INTRON(MODIFIER|||||BX571672.1|processed_transcript|NON_CODING|ENST00000438000|1|1),INTRON(MODIFIER|||||BX571672.1|processed_transcript|NON_CODING|ENST00000447407|1|1),INTRON(MODIFIER|||||BX571672.2|lincRNA|NON_CODING|ENST00000422129|1|1),UPSTREAM(MODIFIER|||||BX571672.3|lincRNA|NON_CODING|ENST00000425124||1);RSPOS=143188555;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	78:0:0:0:78,104:0,0:0,0:0,0	213:3:0:0:201,255:0,0:9,10:0,0
1	143221558	.	C	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||BX571672.5|processed_transcript|NON_CODING|ENST00000429121||1),INTRON(MODIFIER|||||BX571672.1|processed_transcript|NON_CODING|ENST00000428930|1|1),INTRON(MODIFIER|||||BX571672.1|processed_transcript|NON_CODING|ENST00000438000|2|1),INTRON(MODIFIER|||||BX571672.1|processed_transcript|NON_CODING|ENST00000447407|2|1),INTRON(MODIFIER|||||BX571672.5|processed_transcript|NON_CODING|ENST00000422716|7|1),INTRON(MODIFIER|||||BX571672.5|processed_transcript|NON_CODING|ENST00000435585|3|1),INTRON(MODIFIER|||||BX571672.5|processed_transcript|NON_CODING|ENST00000437865|3|1),INTRON(MODIFIER|||||BX571672.5|processed_transcript|NON_CODING|ENST00000439302|8|1),INTRON(MODIFIER|||||BX571672.5|processed_transcript|NON_CODING|ENST00000456937|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:0:0:0:0,0:29,31:0,0:0,0	96:1:0:0:9,11:86,91:0,0:0,0
1	143237910	.	C	T	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=CC->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=DOWNSTREAM(MODIFIER|||||BX571672.1|processed_transcript|NON_CODING|ENST00000438000||1),INTRON(MODIFIER|||||BX571672.5|processed_transcript|NON_CODING|ENST00000416367|5|1),INTRON(MODIFIER|||||BX571672.5|processed_transcript|NON_CODING|ENST00000422716|1|1),INTRON(MODIFIER|||||BX571672.5|processed_transcript|NON_CODING|ENST00000429121|1|1),INTRON(MODIFIER|||||BX571672.5|processed_transcript|NON_CODING|ENST00000439302|2|1),INTRON(MODIFIER|||||BX571672.5|processed_transcript|NON_CODING|ENST00000453561|1|1),UPSTREAM(MODIFIER|||||BX571672.5|processed_transcript|NON_CODING|ENST00000412196||1),UPSTREAM(MODIFIER|||||BX571672.5|processed_transcript|NON_CODING|ENST00000427309||1),UPSTREAM(MODIFIER|||||BX571672.5|processed_transcript|NON_CODING|ENST00000449527||1),UPSTREAM(MODIFIER|||||BX571672.5|processed_transcript|NON_CODING|ENST00000456568||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	64:0:0:0:0,0:64,66:0,0:0,0	161:4:0:0:2,2:147,161:0,0:8,10
1	143273924	.	A	G	.	PASS	NT=ref;QSS=24;QSS_NT=24;SGT=AA->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER|||||BX571672.5|processed_transcript|NON_CODING|ENST00000416367|1|1),UPSTREAM(MODIFIER|||||BX571672.5|processed_transcript|NON_CODING|ENST00000439302||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	84:0:0:0:84,100:0,1:0,2:0,0	258:3:0:0:247,283:0,0:8,8:0,0
1	143275723	.	A	T	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||BX571672.5|processed_transcript|NON_CODING|ENST00000416367||1),UPSTREAM(MODIFIER|||||BX571672.5|processed_transcript|NON_CODING|ENST00000439302||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	115:0:0:0:113,142:0,0:0,0:2,5	318:11:0:0:288,380:0,1:1,1:18,23
1	143428032	rs191833010	A	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||BX004987.4|processed_transcript|NON_CODING|ENST00000436326||1),INTRON(MODIFIER|||||BX004987.4|processed_transcript|NON_CODING|ENST00000423249|1|1),INTRON(MODIFIER|||||BX004987.4|processed_transcript|NON_CODING|ENST00000424068|2|1),INTRON(MODIFIER|||||BX004987.4|processed_transcript|NON_CODING|ENST00000432361|2|1),INTRON(MODIFIER|||||BX004987.4|processed_transcript|NON_CODING|ENST00000443548|2|1),INTRON(MODIFIER|||||BX004987.4|processed_transcript|NON_CODING|ENST00000443766|4|1),UPSTREAM(MODIFIER|||||MIR3118-1|miRNA|NON_CODING|ENST00000584879||1);RSPOS=143428032;dbSNPBuildID=135;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:0:0:0:30,38:0,0:0,0:0,0	98:0:0:0:88,98:0,0:0,0:10,10
1	143467149	.	G	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=EXON(MODIFIER|||||BX004987.4|processed_transcript|NON_CODING|ENST00000424068|1|1),EXON(MODIFIER|||||BX004987.4|processed_transcript|NON_CODING|ENST00000432361|1|1),INTRON(MODIFIER|||||BX004987.4|processed_transcript|NON_CODING|ENST00000329536|1|1),INTRON(MODIFIER|||||BX004987.4|processed_transcript|NON_CODING|ENST00000419027|1|1),INTRON(MODIFIER|||||BX004987.4|processed_transcript|NON_CODING|ENST00000436326|1|1),INTRON(MODIFIER|||||BX004987.4|processed_transcript|NON_CODING|ENST00000443548|1|1),INTRON(MODIFIER|||||BX004987.4|processed_transcript|NON_CODING|ENST00000443766|1|1),UPSTREAM(MODIFIER|||||BX004987.4|processed_transcript|NON_CODING|ENST00000423249||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	91:1:0:0:1,4:0,0:89,100:0,0	212:3:0:0:13,16:0,0:195,219:1,2
1	143468176	rs74569078	G	A	.	PASS	NT=ref;QSS=25;QSS_NT=25;SGT=GG->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||BX004987.4|processed_transcript|NON_CODING|ENST00000329536||1),UPSTREAM(MODIFIER|||||BX004987.4|processed_transcript|NON_CODING|ENST00000419027||1),UPSTREAM(MODIFIER|||||BX004987.4|processed_transcript|NON_CODING|ENST00000423249||1),UPSTREAM(MODIFIER|||||BX004987.4|processed_transcript|NON_CODING|ENST00000424068||1),UPSTREAM(MODIFIER|||||BX004987.4|processed_transcript|NON_CODING|ENST00000432361||1),UPSTREAM(MODIFIER|||||BX004987.4|processed_transcript|NON_CODING|ENST00000436326||1),UPSTREAM(MODIFIER|||||BX004987.4|processed_transcript|NON_CODING|ENST00000443548||1),UPSTREAM(MODIFIER|||||BX004987.4|processed_transcript|NON_CODING|ENST00000443766||1);RSPOS=143468176;dbSNPBuildID=131;SSR=0;SAO=0;VP=050000000009040102000100;WGT=1;VC=SNV;CFL;VLD;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	83:0:0:0:0,3:0,0:83,93:0,0	234:5:0:0:14,26:0,0:215,240:0,0
1	143469508	rs77208520	T	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->GT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||BX004987.4|processed_transcript|NON_CODING|ENST00000329536||1),UPSTREAM(MODIFIER|||||BX004987.4|processed_transcript|NON_CODING|ENST00000419027||1),UPSTREAM(MODIFIER|||||BX004987.4|processed_transcript|NON_CODING|ENST00000423249||1),UPSTREAM(MODIFIER|||||BX004987.4|processed_transcript|NON_CODING|ENST00000424068||1),UPSTREAM(MODIFIER|||||BX004987.4|processed_transcript|NON_CODING|ENST00000432361||1),UPSTREAM(MODIFIER|||||BX004987.4|processed_transcript|NON_CODING|ENST00000436326||1),UPSTREAM(MODIFIER|||||BX004987.4|processed_transcript|NON_CODING|ENST00000443548||1),UPSTREAM(MODIFIER|||||BX004987.4|processed_transcript|NON_CODING|ENST00000443766||1);RSPOS=143469508;dbSNPBuildID=131;SSR=0;SAO=0;VP=050000000009040102000100;WGT=1;VC=SNV;CFL;VLD;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	103:0:0:0:0,0:0,0:2,4:101,109	236:2:0:0:0,0:0,0:15,18:219,232
1	143484183	.	C	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	70:0:0:0:0,0:69,73:0,0:1,1	265:2:0:0:0,0:249,261:0,0:14,20
1	143485873	.	G	A	.	PASS	NT=ref;QSS=31;QSS_NT=31;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	97:1:0:0:1,1:0,0:95,112:0,0	213:1:0:0:18,21:0,0:194,228:0,0
1	143506974	.	C	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER|||||BX004987.6|lincRNA|NON_CODING|ENST00000429884|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	78:1:0:0:0,0:77,110:0,0:0,0	216:2:0:0:0,0:205,310:0,1:9,13
1	143540959	.	G	A	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	28:2:0:0:0,1:0,0:26,34:0,0	99:1:0:0:15,23:3,5:80,112:0,0
1	143925304	.	T	C	.	PASS	NT=ref;QSS=28;QSS_NT=28;SGT=TT->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER|||||SRGAP2B|processed_transcript|NON_CODING|ENST00000467933|2|1),INTRON(MODIFIER|||||SRGAP2B|transcribed_unprocessed_pseudogene|NON_CODING|ENST00000491897|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	63:1:0:0:0,0:0,1:0,0:62,64	128:1:0:0:0,0:10,13:0,0:117,122
1	144520381	.	C	G	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||268|AL592284.2|protein_coding|CODING|ENST00000538264|1|1),INTRON(MODIFIER|||||AL592284.1|antisense|NON_CODING|ENST00000411760|1|1),INTRON(MODIFIER|||||AL592284.1|antisense|NON_CODING|ENST00000411941|1|1),INTRON(MODIFIER|||||AL592284.1|antisense|NON_CODING|ENST00000414344|2|1),INTRON(MODIFIER|||||AL592284.1|antisense|NON_CODING|ENST00000426786|2|1),INTRON(MODIFIER|||||AL592284.1|antisense|NON_CODING|ENST00000430014|1|1),INTRON(MODIFIER|||||AL592284.1|antisense|NON_CODING|ENST00000435404|1|1),INTRON(MODIFIER|||||AL592284.1|antisense|NON_CODING|ENST00000437785|1|1),INTRON(MODIFIER|||||AL592284.1|antisense|NON_CODING|ENST00000442509|1|1),INTRON(MODIFIER|||||AL592284.1|antisense|NON_CODING|ENST00000458262|1|1),UPSTREAM(MODIFIER|||||AL592284.1|antisense|NON_CODING|ENST00000444883||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	21:1:0:0:0,0:20,24:0,1:0,0	37:2:0:0:0,0:28,33:7,10:0,0
1	144520384	.	C	G	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->CG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER||||268|AL592284.2|protein_coding|CODING|ENST00000538264|1|1),INTRON(MODIFIER|||||AL592284.1|antisense|NON_CODING|ENST00000411760|1|1),INTRON(MODIFIER|||||AL592284.1|antisense|NON_CODING|ENST00000411941|1|1),INTRON(MODIFIER|||||AL592284.1|antisense|NON_CODING|ENST00000414344|2|1),INTRON(MODIFIER|||||AL592284.1|antisense|NON_CODING|ENST00000426786|2|1),INTRON(MODIFIER|||||AL592284.1|antisense|NON_CODING|ENST00000430014|1|1),INTRON(MODIFIER|||||AL592284.1|antisense|NON_CODING|ENST00000435404|1|1),INTRON(MODIFIER|||||AL592284.1|antisense|NON_CODING|ENST00000437785|1|1),INTRON(MODIFIER|||||AL592284.1|antisense|NON_CODING|ENST00000442509|1|1),INTRON(MODIFIER|||||AL592284.1|antisense|NON_CODING|ENST00000458262|1|1),UPSTREAM(MODIFIER|||||AL592284.1|antisense|NON_CODING|ENST00000444883||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	21:1:0:0:0,0:20,24:0,1:0,0	38:3:0:0:0,0:28,35:7,10:0,0
1	144588090	.	G	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:1:0:0:0,0:0,0:31,32:0,0	96:1:0:0:7,9:0,0:88,94:0,0
1	144618710	.	A	G	.	PASS	NT=ref;QSS=30;QSS_NT=30;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||NBPF8|lincRNA|NON_CODING|ENST00000448172|5|1),INTRON(MODIFIER|||||NBPF8|processed_transcript|NON_CODING|ENST00000421407|9|1),INTRON(MODIFIER|||||NBPF8|processed_transcript|NON_CODING|ENST00000423405|9|1),INTRON(MODIFIER|||||NBPF8|processed_transcript|NON_CODING|ENST00000427261|1|1),INTRON(MODIFIER|||||NBPF8|processed_transcript|NON_CODING|ENST00000428366|3|1),INTRON(MODIFIER|||||NBPF8|processed_transcript|NON_CODING|ENST00000429694|8|1),INTRON(MODIFIER|||||NBPF8|processed_transcript|NON_CODING|ENST00000437133|7|1),INTRON(MODIFIER|||||NBPF8|processed_transcript|NON_CODING|ENST00000446541|6|1),INTRON(MODIFIER|||||NBPF8|processed_transcript|NON_CODING|ENST00000449960|5|1),INTRON(MODIFIER|||||NBPF8|transcribed_unprocessed_pseudogene|NON_CODING|ENST00000589820|3|1),INTRON(MODIFIER|||||NBPF8|unprocessed_pseudogene|NON_CODING|ENST00000334866|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	104:3:0:0:100,114:0,0:1,2:0,0	243:0:0:0:226,263:0,0:16,20:1,1
1	144899853	rs111981208	C	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||740|PDE4DIP|protein_coding|CODING|ENST00000479408||1),INTRON(MODIFIER||||1132|PDE4DIP|protein_coding|CODING|ENST00000313431|17|1),INTRON(MODIFIER||||2240|PDE4DIP|protein_coding|CODING|ENST00000313382|24|1),INTRON(MODIFIER||||2346|PDE4DIP|protein_coding|CODING|ENST00000369354|21|1),INTRON(MODIFIER||||2362|PDE4DIP|protein_coding|CODING|ENST00000369356|21|1),INTRON(MODIFIER||||2431|PDE4DIP|protein_coding|CODING|ENST00000530740|24|1),INTRON(MODIFIER||||2482|PDE4DIP|protein_coding|CODING|ENST00000369359|24|1),INTRON(MODIFIER||||969|PDE4DIP|protein_coding|CODING|ENST00000369349|21|1),INTRON(MODIFIER||||988|PDE4DIP|protein_coding|CODING|ENST00000369351|21|1),INTRON(MODIFIER|||||PDE4DIP|processed_transcript|CODING|ENST00000467859|9|1),INTRON(MODIFIER|||||PDE4DIP|processed_transcript|CODING|ENST00000524974|1|1),INTRON(MODIFIER|||||PDE4DIP|processed_transcript|CODING|ENST00000533963|1|1),INTRON(MODIFIER|||||PDE4DIP|retained_intron|CODING|ENST00000525886|2|1),UTR_3_PRIME(MODIFIER||||1116|PDE4DIP|protein_coding|CODING|ENST00000529945|17|1);RSPOS=144899853;dbSNPBuildID=132;SSR=0;SAO=0;VP=050000080001000002000100;GENEINFO=PDE4DIP:9659;WGT=1;VC=SNV;INT;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:1:0:0:0,0:34,35:0,0:0,0	104:1:0:0:0,0:95,96:1,1:7,8
1	144899863	rs79766284	A	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||740|PDE4DIP|protein_coding|CODING|ENST00000479408||1),INTRON(MODIFIER||||1132|PDE4DIP|protein_coding|CODING|ENST00000313431|17|1),INTRON(MODIFIER||||2240|PDE4DIP|protein_coding|CODING|ENST00000313382|24|1),INTRON(MODIFIER||||2346|PDE4DIP|protein_coding|CODING|ENST00000369354|21|1),INTRON(MODIFIER||||2362|PDE4DIP|protein_coding|CODING|ENST00000369356|21|1),INTRON(MODIFIER||||2431|PDE4DIP|protein_coding|CODING|ENST00000530740|24|1),INTRON(MODIFIER||||2482|PDE4DIP|protein_coding|CODING|ENST00000369359|24|1),INTRON(MODIFIER||||969|PDE4DIP|protein_coding|CODING|ENST00000369349|21|1),INTRON(MODIFIER||||988|PDE4DIP|protein_coding|CODING|ENST00000369351|21|1),INTRON(MODIFIER|||||PDE4DIP|processed_transcript|CODING|ENST00000467859|9|1),INTRON(MODIFIER|||||PDE4DIP|processed_transcript|CODING|ENST00000524974|1|1),INTRON(MODIFIER|||||PDE4DIP|processed_transcript|CODING|ENST00000533963|1|1),INTRON(MODIFIER|||||PDE4DIP|retained_intron|CODING|ENST00000525886|2|1),UTR_3_PRIME(MODIFIER||||1116|PDE4DIP|protein_coding|CODING|ENST00000529945|17|1);RSPOS=144899863;dbSNPBuildID=131;SSR=0;SAO=0;VP=050000080005000002000100;GENEINFO=PDE4DIP:9659;WGT=1;VC=SNV;INT;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:1:0:0:33,34:0,0:0,0:0,0	104:1:0:0:96,97:0,0:0,0:7,8
1	145124353	rs71237330	C	T	.	PASS	NT=ref;QSS=27;QSS_NT=27;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=145124353;RV;dbSNPBuildID=130;SSR=0;SAO=0;VP=050100000009040102000100;WGT=1;VC=SNV;SLO;CFL;VLD;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	88:0:0:0:0,0:88,88:0,0:0,0	203:1:0:0:1,2:193,197:0,0:8,11
1	145183967	.	C	T	.	PASS	NT=ref;QSS=28;QSS_NT=28;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	57:1:0:0:0,0:56,58:0,0:0,0	154:1:0:0:0,0:144,146:0,0:9,9
1	145242805	rs111281211	C	T	.	PASS	NT=ref;QSS=27;QSS_NT=27;SGT=CC->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER||||230|NOTCH2NL|protein_coding|CODING|ENST00000344859|1|1),INTRON(MODIFIER||||236|NOTCH2NL|protein_coding|CODING|ENST00000362074|1|1),INTRON(MODIFIER||||236|NOTCH2NL|protein_coding|CODING|ENST00000369340|2|1),INTRON(MODIFIER|||||RP11-458D21.5|nonsense_mediated_decay|NON_CODING|ENST00000468030|1|1);RSPOS=145242805;dbSNPBuildID=132;SSR=0;SAO=0;VP=050000080005000002000100;GENEINFO=NOTCH2NL:388677;WGT=1;VC=SNV;INT;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	74:0:0:0:0,0:74,75:0,0:0,2	196:1:0:0:0,0:184,191:0,0:11,13
1	145299875	.	C	A	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=CC->AC;SOMATIC;TQSS=2;TQSS_NT=2;EFF=EXON(MODIFIER|||||NBPF10|processed_transcript|CODING|ENST00000464433|6|1),EXON(MODIFIER|||||NBPF10|processed_transcript|CODING|ENST00000490598|6|1),INTRON(MODIFIER||||673|NBPF10|protein_coding|CODING|ENST00000369339|7|1),NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|aaC/aaA|N233K|763|NBPF10|protein_coding|CODING|ENST00000448873|6|1),NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|aaC/aaA|N308K|3553|NBPF10|protein_coding|CODING|ENST00000342960|6|1),NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|aaC/aaA|N37K|669|NBPF10|protein_coding|CODING|ENST00000369338|2|1),UPSTREAM(MODIFIER|||||NBPF10|processed_transcript|CODING|ENST00000465839||1),UTR_3_PRIME(MODIFIER|||||RP11-458D21.5|nonsense_mediated_decay|NON_CODING|ENST00000468030|11|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	76:1:0:0:2,3:73,85:0,0:0,0	176:2:0:0:7,10:167,195:0,0:0,0
1	145354071	.	G	C	.	PASS	NT=ref;QSS=25;QSS_NT=25;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||3553|NBPF10|protein_coding|CODING|ENST00000342960|65|1),INTRON(MODIFIER||||669|NBPF10|protein_coding|CODING|ENST00000369338|14|1),INTRON(MODIFIER||||673|NBPF10|protein_coding|CODING|ENST00000369339|15|1),INTRON(MODIFIER||||763|NBPF10|protein_coding|CODING|ENST00000448873|13|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	109:0:28:0:0,0:1,2:108,140:0,1	352:2:48:0:0,0:16,22:333,425:1,1
1	145368473	rs1043749	G	C	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=GG->CG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=DOWNSTREAM(MODIFIER||||763|NBPF10|protein_coding|CODING|ENST00000448873||1),DOWNSTREAM(MODIFIER|||||RP11-458D21.2|antisense|NON_CODING|ENST00000421937||1),NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|cGt/cCt|R3484P|3553|NBPF10|protein_coding|CODING|ENST00000342960|84|1),NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|cGt/cCt|R600P|669|NBPF10|protein_coding|CODING|ENST00000369338|16|1),NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|cGt/cCt|R604P|673|NBPF10|protein_coding|CODING|ENST00000369339|17|1);RSPOS=145368473;dbSNPBuildID=86;SSR=1;SAO=0;VP=050100000011030102000140;WGT=1;VC=SNV;SLO;OTH;G5A;G5;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	88:0:0:0:0,0:0,5:88,91:0,0	237:3:0:0:0,0:8,21:226,232:0,0
1	146399728	.	T	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||3331|NBPF12|protein_coding|CODING|ENST00000442909|8|1),INTRON(MODIFIER||||790|NBPF12|protein_coding|CODING|ENST00000309471|7|1),INTRON(MODIFIER||||838|NBPF12|protein_coding|CODING|ENST00000446760|10|1),UPSTREAM(MODIFIER||||67|NBPF12|protein_coding|CODING|ENST00000439206||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:0:0:0:0,0:0,0:0,0:33,34	117:1:0:0:0,0:7,12:0,0:109,111
1	146482086	.	T	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	44:0:0:0:0,0:0,0:0,0:44,44	97:0:0:0:4,5:0,0:0,0:93,93
1	146482115	.	A	C	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	43:0:0:0:43,43:0,0:0,0:0,0	93:0:0:0:89,89:4,5:0,0:0,0
1	146902844	.	G	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:1:0:0:0,0:0,0:32,33:0,0	114:1:0:0:0,0:0,0:108,109:5,5
1	147421942	.	C	T	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||455|GPR89B|protein_coding|CODING|ENST00000314163|5|1),INTRON(MODIFIER|||||GPR89B|processed_transcript|CODING|ENST00000468618|4|1),INTRON(MODIFIER|||||GPR89B|processed_transcript|CODING|ENST00000478307|5|1),INTRON(MODIFIER|||||GPR89B|processed_transcript|CODING|ENST00000488165|5|1),UPSTREAM(MODIFIER|||||GPR89B|processed_transcript|CODING|ENST00000461786||1),UPSTREAM(MODIFIER|||||GPR89B|processed_transcript|CODING|ENST00000491975||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	47:3:0:0:0,1:44,48:0,0:0,0	90:3:0:0:2,2:80,86:0,0:5,6
1	148004386	.	G	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||249|NBPF14|protein_coding|CODING|ENST00000434489||1),DOWNSTREAM(MODIFIER|||||RP3-328E19.4|processed_pseudogene|NON_CODING|ENST00000416378||1),UTR_3_PRIME(MODIFIER||||187|NBPF14|protein_coding|CODING|ENST00000415551|8|1),UTR_3_PRIME(MODIFIER||||269|NBPF14|protein_coding|CODING|ENST00000369368|8|1),UTR_3_PRIME(MODIFIER||||921|NBPF14|protein_coding|CODING|ENST00000369219|22|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:0:0:0:0,0:0,0:31,35:0,0	126:2:0:0:0,0:8,11:116,121:0,0
1	148531046	rs200279880	A	G	.	PASS	NT=ref;QSS=26;QSS_NT=26;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=148531046;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	53:0:0:0:53,59:0,0:0,0:0,0	105:0:0:0:97,98:0,0:8,9:0,0
1	148552589	rs143759005	T	A	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||NBPF15|processed_transcript|CODING|ENST00000464336||1),UPSTREAM(MODIFIER|||||NBPF15|processed_transcript|CODING|ENST00000478419||1),UPSTREAM(MODIFIER|||||NBPF15|processed_transcript|CODING|ENST00000488031||1);RSPOS=148552589;dbSNPBuildID=134;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	44:1:0:0:0,0:0,0:1,1:42,43	110:2:0:0:12,14:0,0:0,0:96,98
1	148560404	rs11486117	G	A	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||NBPF15|processed_transcript|CODING|ENST00000464336|3|1),INTRON(MODIFIER|||||NBPF15|processed_transcript|CODING|ENST00000478419|1|1),INTRON(MODIFIER|||||NBPF15|processed_transcript|CODING|ENST00000488031|2|1),UPSTREAM(MODIFIER||||670|NBPF15|protein_coding|CODING|ENST00000369187||1),UPSTREAM(MODIFIER||||670|NBPF15|protein_coding|CODING|ENST00000442702||1),UPSTREAM(MODIFIER|||||NBPF15|processed_transcript|CODING|ENST00000492711||1);RSPOS=148560404;GMAF=0.082;dbSNPBuildID=120;SSR=0;SAO=0;VP=050000080001070117000100;GENEINFO=NBPF15:284565;WGT=1;VC=SNV;INT;VLD;G5A;G5;GNO;KGPhase1;KGPROD;OTHERKG;PH3	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:0:0:0:0,0:0,0:39,39:0,0	121:0:0:0:7,8:0,0:114,114:0,0
1	148677592	.	T	C	.	PASS	NT=ref;QSS=27;QSS_NT=27;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	59:0:0:0:0,0:0,0:0,0:59,77	167:0:0:0:0,0:9,12:0,0:158,200
1	148827319	.	C	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	28:0:0:0:0,0:28,35:0,0:0,1	63:1:0:0:1,1:54,68:0,0:7,9
1	148827348	.	G	A	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:0:0:0:0,1:0,0:29,37:0,0	78:1:0:0:12,16:0,1:65,85:0,0
1	148854951	.	G	A	.	PASS	NT=ref;QSS=27;QSS_NT=27;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||RP11-763B22.6|lincRNA|NON_CODING|ENST00000456469||1),INTRON(MODIFIER|||||RP11-763B22.9|unprocessed_pseudogene|NON_CODING|ENST00000444424|1|1),UPSTREAM(MODIFIER|||||RP11-763B22.7|processed_pseudogene|NON_CODING|ENST00000444165||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	84:13:0:0:1,3:1,1:69,127:0,1	140:19:0:0:8,15:0,1:113,210:0,3
1	149029262	.	G	T	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	78:9:0:0:0,2:0,0:68,102:1,2	239:28:0:0:0,9:0,0:199,289:12,18
1	149051138	rs72477349	C	G	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->CG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER|||||RP11-744H18.1|unprocessed_pseudogene|NON_CODING|ENST00000449715|10|1);RSPOS=149051138;dbSNPBuildID=130;SSR=0;SAO=0;VP=050100000005040102000100;WGT=1;VC=SNV;SLO;ASP;VLD;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	47:1:0:0:0,0:46,47:0,1:0,0	107:1:0:0:0,1:101,103:5,8:0,0
1	149684179	rs202208441	C	T	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=149684179;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	57:12:0:0:1,1:44,64:0,0:0,1	170:36:0:0:0,0:127,172:0,2:7,8
1	149684187	rs3862217	T	C	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=TT->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=149684187;dbSNPBuildID=108;SSR=0;SAO=0;VP=050100000005000002000100;WGT=1;VC=SNV;SLO;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	56:3:0:0:0,1:0,2:0,0:53,60	180:8:0:0:0,2:10,11:0,1:162,176
1	150726720	.	G	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||281|CTSS|protein_coding|CODING|ENST00000448301|3|1),INTRON(MODIFIER||||331|CTSS|protein_coding|CODING|ENST00000368985|4|1),INTRON(MODIFIER|||||CTSS|processed_transcript|CODING|ENST00000480760|3|1),UPSTREAM(MODIFIER|||||CTSS|processed_transcript|CODING|ENST00000472977||1),UPSTREAM(MODIFIER|||||CTSS|processed_transcript|CODING|ENST00000483930||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:2:0:0:0,0:0,0:33,35:0,0	74:2:0:0:5,6:0,0:67,70:0,0
1	151124857	.	A	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER||||184|TNFAIP8L2|protein_coding|CODING|ENST00000368910||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	27:0:0:0:27,27:0,0:0,0:0,0	104:2:0:0:90,94:1,1:0,0:11,11
1	152267262	rs71625179	T	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||FLG-AS1|antisense|NON_CODING|ENST00000420707|3|1),INTRON(MODIFIER|||||FLG-AS1|processed_transcript|NON_CODING|ENST00000593011|1|1);RSPOS=152267262;GMAF=0.0284;dbSNPBuildID=130;SSR=0;SAO=0;VP=050100000005000116000100;WGT=1;VC=SNV;SLO;ASP;GNO;KGPhase1;KGPROD;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	28:1:0:0:0,0:0,0:0,0:27,28	108:0:0:0:0,0:9,10:0,0:99,99
1	152407893	.	G	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->CG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER|||||RP1-91G5.3|processed_transcript|NON_CODING|ENST00000411804|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	23:0:0:0:0,0:1,2:22,22:0,0	59:1:0:0:0,0:15,19:43,44:0,0
1	152525451	.	G	T	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	48:1:0:0:0,1:0,0:47,47:0,0	112:2:0:0:0,1:0,0:105,106:5,7
1	152922156	.	G	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||RP1-13P20.6|antisense|NON_CODING|ENST00000419578||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	45:0:0:0:0,0:0,0:45,45:0,0	128:0:0:0:9,9:0,0:119,121:0,0
1	154015384	.	C	T	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1736|NUP210L|protein_coding|CODING|ENST00000271854|27|1),INTRON(MODIFIER||||1888|NUP210L|protein_coding|CODING|ENST00000368559|27|1),INTRON(MODIFIER||||669|NUP210L|protein_coding|CODING|ENST00000368553|5|1),UPSTREAM(MODIFIER|||||U6|snRNA|NON_CODING|ENST00000363350||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:0:0:0:0,0:35,38:0,0:0,0	84:3:0:0:0,0:72,77:0,0:9,9
1	154352003	.	G	A	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||RP11-350G8.3|processed_pseudogene|NON_CODING|ENST00000437336||1),UPSTREAM(MODIFIER|||||RP11-350G8.4|processed_pseudogene|NON_CODING|ENST00000449634||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	51:2:0:0:0,0:1,1:48,50:0,0	119:2:0:0:9,9:0,0:107,110:1,1
1	154573138	.	C	T	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||ADAR|processed_transcript|CODING|ENST00000471068||1),DOWNSTREAM(MODIFIER|||||ADAR|processed_transcript|CODING|ENST00000494866||1),DOWNSTREAM(MODIFIER|||||ADAR|processed_transcript|CODING|ENST00000526905||1),EXON(MODIFIER|||||ADAR|retained_intron|CODING|ENST00000463920|3|1),INTRON(MODIFIER||||1194|ADAR|protein_coding|CODING|ENST00000529168|1|1),INTRON(MODIFIER||||1226|ADAR|protein_coding|CODING|ENST00000368474|2|1),INTRON(MODIFIER||||1269|ADAR|protein_coding|CODING|ENST00000292205|2|1),INTRON(MODIFIER||||931|ADAR|protein_coding|CODING|ENST00000368471|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	45:1:0:0:0,0:44,46:0,0:0,0	99:3:0:0:0,0:88,93:0,0:8,8
1	154573139	.	A	G	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||ADAR|processed_transcript|CODING|ENST00000471068||1),DOWNSTREAM(MODIFIER|||||ADAR|processed_transcript|CODING|ENST00000494866||1),DOWNSTREAM(MODIFIER|||||ADAR|processed_transcript|CODING|ENST00000526905||1),EXON(MODIFIER|||||ADAR|retained_intron|CODING|ENST00000463920|3|1),INTRON(MODIFIER||||1194|ADAR|protein_coding|CODING|ENST00000529168|1|1),INTRON(MODIFIER||||1226|ADAR|protein_coding|CODING|ENST00000368474|2|1),INTRON(MODIFIER||||1269|ADAR|protein_coding|CODING|ENST00000292205|2|1),INTRON(MODIFIER||||931|ADAR|protein_coding|CODING|ENST00000368471|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	45:1:0:0:44,46:0,0:0,0:0,0	100:3:0:0:89,93:0,1:8,8:0,0
1	154650181	.	A	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=AA->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:0:0:0:38,38:0,0:0,1:0,0	104:1:0:0:96,96:0,0:7,10:0,0
1	155070102	.	A	G	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:0:0:0:38,38:0,0:0,0:0,0	94:0:0:0:89,90:0,0:5,5:0,0
1	155574432	.	C	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||DAP3P1|processed_pseudogene|NON_CODING|ENST00000441522||1),DOWNSTREAM(MODIFIER|||||RP11-29H23.4|antisense|NON_CODING|ENST00000456382||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:0:0:0:0,0:35,35:0,0:0,0	87:0:0:0:0,0:83,83:0,0:4,4
1	158903506	.	C	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||149|PYHIN1|protein_coding|CODING|ENST00000458222|2|1),INTRON(MODIFIER||||245|PYHIN1|protein_coding|CODING|ENST00000368135|1|1),INTRON(MODIFIER||||452|PYHIN1|protein_coding|CODING|ENST00000392252|1|1),INTRON(MODIFIER||||461|PYHIN1|protein_coding|CODING|ENST00000392254|1|1),INTRON(MODIFIER||||483|PYHIN1|protein_coding|CODING|ENST00000368138|1|1),INTRON(MODIFIER||||492|PYHIN1|protein_coding|CODING|ENST00000368140|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:0:0:0:0,0:31,31:0,0:0,0	102:1:0:0:9,9:92,93:0,0:0,0
1	158927022	.	T	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||452|PYHIN1|protein_coding|CODING|ENST00000392252|7|1),INTRON(MODIFIER||||461|PYHIN1|protein_coding|CODING|ENST00000392254|7|1),INTRON(MODIFIER||||483|PYHIN1|protein_coding|CODING|ENST00000368138|7|1),INTRON(MODIFIER||||492|PYHIN1|protein_coding|CODING|ENST00000368140|7|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	28:0:0:0:0,0:0,0:0,0:28,32	83:1:0:0:10,13:0,0:0,0:72,88
1	160257855	.	G	C	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||1224|COPA|protein_coding|CODING|ENST00000241704||1),DOWNSTREAM(MODIFIER||||1233|COPA|protein_coding|CODING|ENST00000368069||1),INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER||||209|PEX19|protein_coding|CODING|ENST00000440949||1),UPSTREAM(MODIFIER||||234|PEX19|protein_coding|CODING|ENST00000392220||1),UPSTREAM(MODIFIER||||299|PEX19|protein_coding|CODING|ENST00000368072||1),UPSTREAM(MODIFIER||||751|DCAF8|protein_coding|CODING|ENST00000555195||1),UPSTREAM(MODIFIER||||751|RP11-574F21.3|protein_coding|CODING|ENST00000556710||1),UPSTREAM(MODIFIER|||||PEX19|nonsense_mediated_decay|CODING|ENST00000462644||1),UPSTREAM(MODIFIER|||||PEX19|nonsense_mediated_decay|CODING|ENST00000472750||1),UPSTREAM(MODIFIER|||||PEX19|nonsense_mediated_decay|CODING|ENST00000532643||1),UPSTREAM(MODIFIER|||||PEX19|processed_transcript|CODING|ENST00000532508||1),UPSTREAM(MODIFIER|||||PEX19|processed_transcript|CODING|ENST00000533104||1),UPSTREAM(MODIFIER|||||PEX19|processed_transcript|CODING|ENST00000533699||1),UPSTREAM(MODIFIER|||||PEX19|retained_intron|CODING|ENST00000524939||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	42:1:0:0:0,0:0,0:41,43:0,0	122:3:0:0:0,0:7,7:112,117:0,0
1	161531305	rs1036616	G	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||254|FCGR3A|protein_coding|CODING|ENST00000540048|2|1),UPSTREAM(MODIFIER|||||RP11-5K23.5|antisense|NON_CODING|ENST00000419446||1);RSPOS=161531305;dbSNPBuildID=92;SSR=0;SAO=0;VP=050100000005030102000100;WGT=1;VC=SNV;SLO;ASP;G5A;G5;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	48:2:0:0:1,1:0,0:45,46:0,0	113:3:0:0:12,16:0,0:98,100:0,0
1	161802948	.	C	A	.	PASS	NT=ref;QSS=30;QSS_NT=30;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||670|ATF6|protein_coding|CODING|ENST00000367942|9|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	60:0:0:0:0,0:60,60:0,0:0,0	109:2:0:0:7,11:100,103:0,0:0,0
1	161802973	.	A	C	.	PASS	NT=ref;QSS=27;QSS_NT=27;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||670|ATF6|protein_coding|CODING|ENST00000367942|9|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	55:1:0:0:54,56:0,0:0,0:0,0	109:0:0:0:103,103:6,11:0,0:0,0
1	162436044	.	T	C	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=TT->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	51:3:0:0:0,1:1,2:0,1:47,48	82:3:0:0:0,0:9,15:0,0:70,73
1	163755098	.	A	G	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	43:0:0:0:43,43:0,0:0,0:0,0	103:0:0:0:91,91:0,0:12,12:0,0
1	164006861	.	T	A	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:0:0:0:0,0:0,0:0,0:39,39	110:2:0:0:6,7:0,0:0,0:102,104
1	166419129	rs184069996	G	A	.	PASS	NT=ref;QSS=28;QSS_NT=28;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-479J7.1|lincRNA|NON_CODING|ENST00000448643|2|1);RSPOS=166419129;GMAF=0.0005;dbSNPBuildID=135;SSR=0;SAO=0;VP=050000000005000014000100;WGT=1;VC=SNV;ASP;KGPhase1;KGPROD	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	48:0:0:0:0,0:0,0:48,48:0,0	82:2:0:0:12,12:0,0:68,69:0,0
1	166998947	.	A	G	.	PASS	NT=ref;QSS=24;QSS_NT=24;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	49:0:0:0:48,48:1,1:0,0:0,0	106:6:0:0:93,97:0,1:7,9:0,0
1	167381231	rs145573672	G	A	.	PASS	NT=ref;QSS=27;QSS_NT=27;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=EXON(MODIFIER|||||POU2F1|nonsense_mediated_decay|CODING|ENST00000558944|14|1),EXON(MODIFIER|||||POU2F1|retained_intron|CODING|ENST00000557874|13|1),NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|Gtg/Atg|V416M|561|POU2F1|protein_coding|CODING|ENST00000443275|10|1),NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|Gtg/Atg|V468M|703|POU2F1|protein_coding|CODING|ENST00000429375|13|1),NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|Gtg/Atg|V506M|741|POU2F1|protein_coding|CODING|ENST00000367865|16|1),NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|Gtg/Atg|V508M|653|POU2F1|protein_coding|CODING|ENST00000420254|15|1),NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|Gtg/Atg|V508M|743|POU2F1|protein_coding|CODING|ENST00000271411|15|1),NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|Gtg/Atg|V508M|743|POU2F1|protein_coding|CODING|ENST00000541643|14|1),NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|Gtg/Atg|V520M|755|POU2F1|protein_coding|CODING|ENST00000367862|14|1),NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|Gtg/Atg|V520M|755|POU2F1|protein_coding|CODING|ENST00000560232|14|1),NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|Gtg/Atg|V531M|766|POU2F1|protein_coding|CODING|ENST00000367866|14|1);RSPOS=167381231;dbSNPBuildID=134;SSR=0;SAO=0;VP=050000000a05000002000100;GENEINFO=POU2F1:5451;WGT=1;VC=SNV;NSM;REF;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	55:1:0:0:0,0:0,0:54,55:0,0	96:0:0:0:11,11:1,1:84,85:0,0
1	167458318	.	G	A	.	PASS	NT=ref;QSS=24;QSS_NT=24;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||163|CD247|protein_coding|CODING|ENST00000392122|1|1),INTRON(MODIFIER||||164|CD247|protein_coding|CODING|ENST00000362089|1|1),INTRON(MODIFIER|||||CD247|processed_transcript|CODING|ENST00000479979|1|1),INTRON(MODIFIER|||||CD247|processed_transcript|CODING|ENST00000483825|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	47:0:0:0:0,0:0,0:47,47:0,0	109:1:0:0:8,8:0,0:100,101:0,0
1	168578734	.	C	T	.	PASS	NT=ref;QSS=29;QSS_NT=29;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	59:0:0:0:0,0:59,59:0,0:0,0	91:0:0:0:0,0:84,84:0,0:7,7
1	168692112	.	A	G	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||201|DPT|protein_coding|CODING|ENST00000367817|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:0:0:0:35,35:0,0:0,0:0,0	81:1:0:0:75,76:0,0:5,5:0,0
1	172119625	.	T	G	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||444|DNM3|protein_coding|CODING|ENST00000523513|13|1),INTRON(MODIFIER||||639|DNM3|protein_coding|CODING|ENST00000520906|14|1),INTRON(MODIFIER||||859|DNM3|protein_coding|CODING|ENST00000367731|14|1),INTRON(MODIFIER||||863|DNM3|protein_coding|CODING|ENST00000358155|14|1),INTRON(MODIFIER||||869|DNM3|protein_coding|CODING|ENST00000355305|15|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	45:0:0:0:0,0:0,0:0,0:45,45	121:0:0:0:0,0:0,0:5,5:116,116
1	172384083	.	A	G	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||859|DNM3|protein_coding|CODING|ENST00000367731||1),DOWNSTREAM(MODIFIER||||863|DNM3|protein_coding|CODING|ENST00000358155||1),INTRON(MODIFIER||||221|DNM3|protein_coding|CODING|ENST00000485254|3|1),INTRON(MODIFIER|||||PIGC|processed_transcript|CODING|ENST00000475059|1|1),INTRON(MODIFIER|||||PIGC|processed_transcript|CODING|ENST00000484368|2|1),INTRON(MODIFIER|||||PIGC|processed_transcript|CODING|ENST00000488806|2|1),INTRON(MODIFIER|||||PIGC|processed_transcript|CODING|ENST00000489002|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:1:0:0:36,37:0,0:0,0:0,0	103:0:0:0:94,96:0,0:9,9:0,0
1	172587122	rs202137688	T	A	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||U6|snRNA|NON_CODING|ENST00000516134||1);RSPOS=172587122;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000000001000402000100;WGT=1;VC=SNV;HD;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:0:0:0:0,0:0,0:0,0:36,36	114:0:0:0:7,7:0,0:0,0:107,108
1	172587126	.	C	T	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||U6|snRNA|NON_CODING|ENST00000516134||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:0:0:0:0,0:36,36:0,0:0,0	116:0:0:0:0,0:109,110:0,0:7,7
1	172587158	.	G	T	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||U6|snRNA|NON_CODING|ENST00000516134||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:1:0:0:0,0:0,0:37,38:0,0	130:1:0:0:0,0:0,0:123,123:6,7
1	172587159	.	C	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||U6|snRNA|NON_CODING|ENST00000516134||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:1:0:0:0,0:35,36:1,1:0,0	128:1:0:0:0,0:120,120:1,1:6,7
1	172905112	rs143130048	G	T	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP1-15D23.2|antisense|NON_CODING|ENST00000432694|1|1);RSPOS=172905112;GMAF=0.0009;dbSNPBuildID=134;SSR=0;SAO=0;VP=050000000005000014000100;WGT=1;VC=SNV;ASP;KGPhase1;KGPROD	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:0:0:0:0,0:0,0:39,39:0,0	112:1:0:0:0,0:0,0:103,104:8,8
1	173336165	.	A	C	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||RP11-296O14.2|processed_pseudogene|NON_CODING|ENST00000432815||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:0:0:0:39,39:0,0:0,0:0,0	120:0:0:0:110,110:10,10:0,0:0,0
1	174319199	.	G	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||AL022400.1|miRNA|NON_CODING|ENST00000585310||1),INTRON(MODIFIER||||252|RABGAP1L|protein_coding|CODING|ENST00000367689|11|1),INTRON(MODIFIER||||581|RABGAP1L|protein_coding|CODING|ENST00000457696|11|1),INTRON(MODIFIER||||605|RABGAP1L|protein_coding|CODING|ENST00000357444|11|1),INTRON(MODIFIER||||815|RABGAP1L|protein_coding|CODING|ENST00000251507|11|1),INTRON(MODIFIER|||||RABGAP1L|processed_transcript|CODING|ENST00000367690|4|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:6:0:0:0,0:0,1:31,47:0,0	80:11:0:0:6,6:0,3:62,112:1,1
1	174319215	.	T	C	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||AL022400.1|miRNA|NON_CODING|ENST00000585310||1),INTRON(MODIFIER||||252|RABGAP1L|protein_coding|CODING|ENST00000367689|11|1),INTRON(MODIFIER||||581|RABGAP1L|protein_coding|CODING|ENST00000457696|11|1),INTRON(MODIFIER||||605|RABGAP1L|protein_coding|CODING|ENST00000357444|11|1),INTRON(MODIFIER||||815|RABGAP1L|protein_coding|CODING|ENST00000251507|11|1),INTRON(MODIFIER|||||RABGAP1L|processed_transcript|CODING|ENST00000367690|4|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	41:4:0:0:0,0:0,0:2,5:35,46	85:8:0:0:0,0:7,11:2,7:68,103
1	174520112	rs11802790	G	A	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||605|RABGAP1L|protein_coding|CODING|ENST00000357444||1),INTRON(MODIFIER||||815|RABGAP1L|protein_coding|CODING|ENST00000251507|13|1),INTRON(MODIFIER|||||RABGAP1L|processed_transcript|CODING|ENST00000526253|3|1);RSPOS=174520112;GMAF=0.0861;dbSNPBuildID=120;SSR=0;SAO=0;VP=050000080001040016000100;GENEINFO=RABGAP1L:9910;WGT=1;VC=SNV;INT;VLD;KGPhase1;KGPROD;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:1:0:0:0,0:0,0:34,35:0,0	103:4:5:0:13,17:1,1:84,84:1,1
1	174749656	.	G	A	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||358|RABGAP1L|protein_coding|CODING|ENST00000325589|3|1),INTRON(MODIFIER||||377|RABGAP1L|protein_coding|CODING|ENST00000367687|3|1),INTRON(MODIFIER||||378|RABGAP1L|protein_coding|CODING|ENST00000347255|3|1),INTRON(MODIFIER||||815|RABGAP1L|protein_coding|CODING|ENST00000251507|18|1),INTRON(MODIFIER|||||RABGAP1L|nonsense_mediated_decay|CODING|ENST00000469553|3|1),INTRON(MODIFIER|||||RABGAP1L|processed_transcript|CODING|ENST00000367686|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:0:0:0:0,0:0,0:38,38:0,0	120:1:0:0:16,16:0,0:103,105:0,0
1	177133523	.	G	T	.	PASS	NT=ref;QSS=23;QSS_NT=23;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1216|ASTN1|protein_coding|CODING|ENST00000424564|1|1),INTRON(MODIFIER||||1228|ASTN1|protein_coding|CODING|ENST00000367657|1|1),INTRON(MODIFIER||||1294|ASTN1|protein_coding|CODING|ENST00000361833|1|1),INTRON(MODIFIER||||1302|ASTN1|protein_coding|CODING|ENST00000367654|1|1),INTRON(MODIFIER|||||ASTN1|processed_transcript|CODING|ENST00000281881|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	46:1:0:0:0,0:0,0:45,46:0,0	78:2:0:0:0,0:0,0:68,70:8,8
1	177368280	rs12746143	A	T	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP1-35C21.2|lincRNA|NON_CODING|ENST00000438575|2|1),INTRON(MODIFIER|||||RP1-35C21.2|lincRNA|NON_CODING|ENST00000458070|3|1);RSPOS=177368280;GMAF=0.1296;dbSNPBuildID=121;SSR=0;SAO=0;VP=050000080001040116000100;GENEINFO=LOC100506128:100506128;WGT=1;VC=SNV;INT;VLD;GNO;KGPhase1;KGPROD;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	17:0:0:0:17,18:0,0:0,0:0,0	36:0:0:0:24,26:0,0:0,0:12,12
1	177484151	.	T	G	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP1-35C21.2|lincRNA|NON_CODING|ENST00000438575|2|1),INTRON(MODIFIER|||||RP1-35C21.2|lincRNA|NON_CODING|ENST00000458070|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:1:0:0:0,0:1,1:0,0:31,32	120:0:0:0:0,0:0,0:10,10:110,110
1	177535350	.	C	T	.	PASS	NT=ref;QSS=35;QSS_NT=35;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP1-35C21.2|lincRNA|NON_CODING|ENST00000438575|2|1),INTRON(MODIFIER|||||RP1-35C21.2|lincRNA|NON_CODING|ENST00000458070|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	54:0:0:0:0,0:54,54:0,0:0,0	119:2:0:0:1,1:97,99:0,0:19,20
1	178125752	.	G	C	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1269|RASAL2|protein_coding|CODING|ENST00000448150|1|1),INTRON(MODIFIER||||1280|RASAL2|protein_coding|CODING|ENST00000367649|1|1),INTRON(MODIFIER|||||RASAL2|processed_transcript|CODING|ENST00000465723|4|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:0:0:0:0,0:0,0:39,39:0,0	109:0:0:0:0,0:6,6:103,103:0,0
1	179504937	.	G	A	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1012|AXDND1|protein_coding|CODING|ENST00000367618|25|1),INTRON(MODIFIER||||872|AXDND1|protein_coding|CODING|ENST00000434088|21|1),INTRON(MODIFIER|||||AXDND1|nonsense_mediated_decay|CODING|ENST00000511157|25|1),INTRON(MODIFIER|||||AXDND1|processed_transcript|CODING|ENST00000484455|1|1),INTRON(MODIFIER|||||AXDND1|processed_transcript|CODING|ENST00000484883|8|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	42:0:0:0:0,0:0,0:42,42:0,0	110:1:0:0:7,10:0,0:101,103:1,1
1	180655933	.	A	C	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||631|XPR1|protein_coding|CODING|ENST00000367589|2|1),INTRON(MODIFIER||||696|XPR1|protein_coding|CODING|ENST00000367590|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:0:0:0:36,36:0,0:0,0:0,0	109:0:0:0:102,102:7,7:0,0:0,0
1	181035074	.	A	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||341|MR1|protein_coding|CODING|ENST00000367580||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:1:0:0:29,30:0,0:0,0:0,0	105:2:0:0:98,98:5,7:0,0:0,0
1	181676058	.	G	T	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1877|CACNA1E|protein_coding|CODING|ENST00000367567|7|1),INTRON(MODIFIER||||2202|CACNA1E|protein_coding|CODING|ENST00000358338|7|1),INTRON(MODIFIER||||2251|CACNA1E|protein_coding|CODING|ENST00000526775|7|1),INTRON(MODIFIER||||2264|CACNA1E|protein_coding|CODING|ENST00000357570|7|1),INTRON(MODIFIER||||2270|CACNA1E|protein_coding|CODING|ENST00000367570|7|1),INTRON(MODIFIER||||2294|CACNA1E|protein_coding|CODING|ENST00000360108|7|1),INTRON(MODIFIER||||2313|CACNA1E|protein_coding|CODING|ENST00000367573|7|1),INTRON(MODIFIER||||437|CACNA1E|protein_coding|CODING|ENST00000524607|8|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:2:0:0:0,1:0,0:38,39:0,0	94:0:0:0:0,0:0,0:89,89:5,5
1	182285739	.	A	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||GS1-122H1.2|processed_transcript|NON_CODING|ENST00000449842||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:1:0:0:31,32:0,0:0,0:0,0	79:1:0:0:74,84:0,0:4,4:0,0
1	182478550	.	A	G	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1076|RGSL1|protein_coding|CODING|ENST00000294854|9|1),INTRON(MODIFIER||||984|RGSL1|protein_coding|CODING|ENST00000542961|10|1),INTRON(MODIFIER|||||RGSL1|nonsense_mediated_decay|CODING|ENST00000415960|3|1),INTRON(MODIFIER|||||RGSL1|nonsense_mediated_decay|CODING|ENST00000443996|10|1),INTRON(MODIFIER|||||RGSL1|retained_intron|CODING|ENST00000436031|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	22:0:0:0:21,31:1,2:0,1:0,0	26:3:0:0:17,32:0,1:6,9:0,0
1	182513824	.	C	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1076|RGSL1|protein_coding|CODING|ENST00000294854|15|1),INTRON(MODIFIER||||984|RGSL1|protein_coding|CODING|ENST00000542961|16|1),INTRON(MODIFIER|||||RGSL1|nonsense_mediated_decay|CODING|ENST00000415960|9|1),INTRON(MODIFIER|||||RGSL1|nonsense_mediated_decay|CODING|ENST00000443996|16|1),INTRON(MODIFIER|||||RGSL1|retained_intron|CODING|ENST00000436031|7|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:0:0:0:0,0:32,32:0,0:0,0	99:2:0:0:0,0:92,95:0,0:5,5
1	187490848	.	C	T	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:1:0:0:0,0:37,38:0,0:0,0	93:1:0:0:0,0:86,87:0,0:6,6
1	188127356	.	C	T	.	PASS	NT=ref;QSS=25;QSS_NT=25;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||7SK|misc_RNA|NON_CODING|ENST00000410308||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	50:0:0:0:0,0:50,50:0,0:0,0	104:1:0:0:0,0:97,101:0,0:6,6
1	188269540	.	G	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:0:0:0:0,0:0,0:33,33:0,0	112:2:0:0:0,0:0,0:105,107:5,5
1	189067505	.	A	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:1:0:0:28,29:0,0:0,0:0,0	102:1:0:0:93,95:0,0:8,8:0,0
1	189457546	.	C	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	46:0:0:0:0,0:46,46:0,0:0,2	110:0:0:0:0,0:104,104:0,0:6,9
1	189457567	.	G	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->GT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	44:0:0:0:0,0:0,0:44,44:0,2	109:0:0:0:0,0:0,0:103,103:6,9
1	189531451	.	G	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	16:1:0:0:0,0:0,0:15,16:0,0	29:1:0:0:6,7:0,0:21,22:1,1
1	189548657	.	G	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:1:0:0:0,0:0,0:30,31:0,0	104:0:0:0:9,9:0,0:95,96:0,0
1	190580079	.	A	T	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:0:0:0:33,33:0,0:0,0:0,0	106:0:0:0:92,92:0,0:0,0:14,14
1	190722346	.	A	C	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-463J7.2|processed_transcript|NON_CODING|ENST00000413356|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	46:0:0:0:45,45:0,0:1,1:0,0	94:0:0:0:90,90:4,4:0,0:0,0
1	191065881	.	C	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	28:0:0:0:0,0:28,28:0,0:0,0	109:2:0:0:6,6:101,103:0,0:0,0
1	192121522	.	G	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:0:0:0:0,0:0,0:30,30:0,0	101:0:0:0:9,9:0,0:92,92:0,0
1	193877719	.	T	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:0:0:0:0,0:0,0:0,0:31,31	103:3:0:0:7,8:0,0:1,1:92,94
1	193877721	.	A	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:0:0:0:31,31:0,0:0,0:0,0	103:3:0:0:93,95:0,0:0,0:7,8
1	194639746	.	C	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:0:0:0:0,0:31,31:0,0:0,0	114:1:0:0:11,11:102,103:0,0:0,0
1	195373380	.	T	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	28:0:0:0:0,0:0,0:0,0:28,28	100:0:0:0:0,0:7,7:0,0:93,93
1	195456540	.	T	G	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:0:0:0:0,0:0,0:0,0:35,35	124:0:0:0:0,0:0,0:9,9:115,115
1	198101005	.	G	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:2:0:0:0,0:0,0:31,33:0,0	111:2:0:0:9,9:0,0:100,103:0,0
1	198486145	.	T	G	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:1:0:0:0,0:0,0:0,0:34,35	135:9:0:0:0,0:0,0:7,11:119,125
1	198577439	.	G	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:0:0:0:0,0:0,0:29,29:1,1	116:0:0:0:13,13:1,1:102,102:0,0
1	200492182	.	C	T	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=CC->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	54:0:0:0:0,0:54,55:0,0:0,1	113:3:0:0:0,0:103,105:0,0:7,7
1	200786224	.	A	G	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1462|CAMSAP2|protein_coding|CODING|ENST00000413307|4|1),INTRON(MODIFIER||||1478|CAMSAP2|protein_coding|CODING|ENST00000358823|4|1),INTRON(MODIFIER||||1489|CAMSAP2|protein_coding|CODING|ENST00000236925|4|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:2:0:0:34,35:0,1:0,0:0,0	87:0:0:0:83,83:0,0:4,4:0,0
1	201206485	rs61818186	C	T	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=201206485;dbSNPBuildID=129;SSR=0;SAO=0;VP=050000000009000002000100;WGT=1;VC=SNV;CFL;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	44:0:0:0:0,0:44,51:0,0:0,0	99:0:0:0:0,0:93,111:0,0:6,9
1	202048404	.	A	C	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	44:1:0:0:43,45:0,0:0,1:0,0	96:4:0:0:85,88:6,8:1,4:0,0
1	202222534	.	T	G	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||231|LGR6|protein_coding|CODING|ENST00000423542|4|1),INTRON(MODIFIER||||828|LGR6|protein_coding|CODING|ENST00000439764|4|1),INTRON(MODIFIER||||915|LGR6|protein_coding|CODING|ENST00000255432|4|1),INTRON(MODIFIER||||967|LGR6|protein_coding|CODING|ENST00000367278|4|1),INTRON(MODIFIER|||||LGR6|nonsense_mediated_decay|CODING|ENST00000487787|4|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:0:0:0:0,0:0,0:0,0:34,34	94:3:0:0:0,0:0,0:5,6:86,93
1	202222536	.	C	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER||||231|LGR6|protein_coding|CODING|ENST00000423542|4|1),INTRON(MODIFIER||||828|LGR6|protein_coding|CODING|ENST00000439764|4|1),INTRON(MODIFIER||||915|LGR6|protein_coding|CODING|ENST00000255432|4|1),INTRON(MODIFIER||||967|LGR6|protein_coding|CODING|ENST00000367278|4|1),INTRON(MODIFIER|||||LGR6|nonsense_mediated_decay|CODING|ENST00000487787|4|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:0:0:0:0,0:36,36:0,0:0,0	93:3:0:0:0,0:85,93:0,0:5,5
1	203749695	.	C	G	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||398|LAX1|protein_coding|CODING|ENST00000442561||1),DOWNSTREAM(MODIFIER|||||LAX1|processed_transcript|CODING|ENST00000367215||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:0:0:0:0,0:33,33:0,0:0,0	122:2:0:0:0,0:112,115:8,10:0,0
1	206260039	.	G	T	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||SNORD60|snoRNA|NON_CODING|ENST00000516883||1),INTRON(MODIFIER||||172|C1orf186|protein_coding|CODING|ENST00000331555|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	41:1:0:0:0,0:0,0:40,41:0,0	107:0:0:0:0,0:0,0:101,102:6,6
1	206561774	rs199978579	G	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER||||251|SRGAP2|protein_coding|CODING|ENST00000419187|1|1),INTRON(MODIFIER||||703|SRGAP2|protein_coding|CODING|ENST00000414359|2|1),INTRON(MODIFIER||||931|SRGAP2|protein_coding|CODING|ENST00000414007|1|1),UPSTREAM(MODIFIER|||||SRGAP2|processed_transcript|CODING|ENST00000483628||1);RSPOS=206561774;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:1:0:0:0,0:0,0:32,34:0,0	86:0:0:0:11,11:0,0:75,78:0,0
1	209097888	.	G	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	27:0:0:0:0,0:0,0:27,27:0,0	115:2:0:0:0,0:1,1:105,107:7,7
1	209618597	.	G	A	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	41:0:0:0:0,0:0,0:41,43:0,0	89:0:0:0:5,5:0,0:84,84:0,0
1	211018755	rs201848755	G	C	.	PASS	NT=ref;QSS=24;QSS_NT=24;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||962|KCNH1|protein_coding|CODING|ENST00000367007|7|1),INTRON(MODIFIER||||989|KCNH1|protein_coding|CODING|ENST00000271751|7|1);RSPOS=211018755;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000080005000002000100;WGT=1;VC=SNV;INT;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	50:1:0:0:1,1:0,1:48,73:0,0	119:1:0:0:0,0:8,9:109,162:1,1
1	211149771	.	C	G	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||962|KCNH1|protein_coding|CODING|ENST00000367007|6|1),INTRON(MODIFIER||||989|KCNH1|protein_coding|CODING|ENST00000271751|6|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:0:0:0:0,0:36,40:0,0:0,0	127:4:0:0:0,0:116,120:7,10:0,0
1	211991290	.	C	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||370|LPGAT1|protein_coding|CODING|ENST00000366996|2|1),INTRON(MODIFIER||||370|LPGAT1|protein_coding|CODING|ENST00000366997|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:2:0:0:0,0:37,38:0,1:0,0	106:0:0:0:0,0:102,102:0,0:4,4
1	212494506	.	T	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||PPP2R5A|processed_transcript|CODING|ENST00000498123||1),INTRON(MODIFIER||||429|PPP2R5A|protein_coding|CODING|ENST00000537030|1|1),INTRON(MODIFIER||||486|PPP2R5A|protein_coding|CODING|ENST00000261461|1|1),INTRON(MODIFIER||||486|PPP2R5A|protein_coding|CODING|ENST00000542178|2|1),INTRON(MODIFIER|||||PPP2R5A|processed_transcript|CODING|ENST00000479259|2|1),INTRON(MODIFIER|||||PPP2R5A|processed_transcript|CODING|ENST00000498129|2|1),INTRON(MODIFIER|||||RP11-384C4.7|processed_transcript|NON_CODING|ENST00000442146|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	46:2:0:0:0,0:1,1:1,3:42,45	89:5:1:0:0,0:11,13:2,2:71,77
1	214153616	.	A	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||PROX1-AS1|antisense|NON_CODING|ENST00000451396|1|1),UPSTREAM(MODIFIER||||229|PROX1|protein_coding|CODING|ENST00000471129||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:3:0:0:27,30:0,0:0,0:0,0	65:3:0:0:51,52:10,12:1,1:0,0
1	215677836	.	C	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:0:0:0:0,0:31,31:0,0:0,0	100:1:0:0:0,0:87,89:0,0:12,12
1	216203457	rs34321074	G	A	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||5202|USH2A|protein_coding|CODING|ENST00000307340|32|1),INTRON(MODIFIER||||5226|USH2A|protein_coding|CODING|ENST00000366943|32|1);RSPOS=216203457;dbSNPBuildID=126;SSR=0;SAO=0;VP=050100080001000102000100;GENEINFO=USH2A:7399;WGT=1;VC=SNV;SLO;INT;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	43:0:0:0:0,0:0,0:42,42:1,1	143:4:0:0:9,12:0,0:128,130:2,2
1	216679765	.	A	T	.	PASS	NT=ref;QSS=23;QSS_NT=23;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||435|ESRRG|protein_coding|CODING|ENST00000493748||1),UTR_3_PRIME(MODIFIER||||396|ESRRG|protein_coding|CODING|ENST00000463665|8|1),UTR_3_PRIME(MODIFIER||||435|ESRRG|protein_coding|CODING|ENST00000359162|8|1),UTR_3_PRIME(MODIFIER||||435|ESRRG|protein_coding|CODING|ENST00000360012|7|1),UTR_3_PRIME(MODIFIER||||435|ESRRG|protein_coding|CODING|ENST00000361395|8|1),UTR_3_PRIME(MODIFIER||||435|ESRRG|protein_coding|CODING|ENST00000361525|9|1),UTR_3_PRIME(MODIFIER||||435|ESRRG|protein_coding|CODING|ENST00000366938|8|1),UTR_3_PRIME(MODIFIER||||435|ESRRG|protein_coding|CODING|ENST00000366940|9|1),UTR_3_PRIME(MODIFIER||||435|ESRRG|protein_coding|CODING|ENST00000487276|9|1),UTR_3_PRIME(MODIFIER||||435|ESRRG|protein_coding|CODING|ENST00000493603|9|1),UTR_3_PRIME(MODIFIER||||442|ESRRG|protein_coding|CODING|ENST00000391890|9|1),UTR_3_PRIME(MODIFIER||||458|ESRRG|protein_coding|CODING|ENST00000408911|7|1),UTR_3_PRIME(MODIFIER||||470|ESRRG|protein_coding|CODING|ENST00000366937|8|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	45:0:0:0:45,46:0,0:0,0:0,0	106:10:0:0:87,97:0,0:0,0:9,9
1	217981934	.	G	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||361|SPATA17|protein_coding|CODING|ENST00000366933|9|1),INTRON(MODIFIER|||||SPATA17|processed_transcript|CODING|ENST00000471021|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:0:0:0:0,0:0,0:29,29:0,0	100:0:0:0:0,0:8,8:92,93:0,0
1	219037879	.	G	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:0:0:0:0,0:0,0:31,31:0,0	97:1:0:0:6,6:0,0:90,91:0,0
1	221057426	.	C	T	.	PASS	NT=ref;QSS=24;QSS_NT=24;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||150|HLX|protein_coding|CODING|ENST00000427693|3|1),INTRON(MODIFIER||||274|HLX|protein_coding|CODING|ENST00000549319|1|1),INTRON(MODIFIER||||488|HLX|protein_coding|CODING|ENST00000366903|3|1),UPSTREAM(MODIFIER|||||HLA-AS1|antisense|NON_CODING|ENST00000552026||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	48:0:0:0:0,0:48,48:0,0:0,0	99:2:0:0:0,0:92,94:0,0:5,5
1	222661840	.	C	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:5:0:0:0,0:30,53:0,0:0,0	51:5:0:0:0,0:40,82:0,0:6,8
1	222661843	.	C	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:5:0:0:0,0:29,54:0,0:0,0	50:5:0:0:6,8:39,81:0,0:0,0
1	222947600	.	G	A	.	PASS	NT=ref;QSS=23;QSS_NT=23;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	45:0:0:0:0,0:0,0:45,45:0,0	104:1:0:0:8,8:0,1:95,99:0,0
1	225019846	.	G	A	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:0:0:0:0,0:0,0:39,40:0,0	96:0:0:0:8,8:0,0:88,88:0,0
1	227237996	.	G	C	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1638|CDC42BPA|protein_coding|CODING|ENST00000366767|20|1),INTRON(MODIFIER||||1691|CDC42BPA|protein_coding|CODING|ENST00000366764|21|1),INTRON(MODIFIER||||1699|CDC42BPA|protein_coding|CODING|ENST00000535525|21|1),INTRON(MODIFIER||||1719|CDC42BPA|protein_coding|CODING|ENST00000366769|21|1),INTRON(MODIFIER||||1732|CDC42BPA|protein_coding|CODING|ENST00000366765|22|1),INTRON(MODIFIER||||1754|CDC42BPA|protein_coding|CODING|ENST00000366766|22|1),INTRON(MODIFIER||||1781|CDC42BPA|protein_coding|CODING|ENST00000334218|21|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	41:0:0:0:0,0:0,0:41,41:0,0	79:0:0:0:0,0:10,10:69,69:0,0
1	230072312	.	G	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:0:0:0:0,0:0,0:36,36:0,0	84:0:0:0:0,0:4,4:80,80:0,0
1	230165927	.	G	A	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:0:0:0:0,0:0,0:36,36:0,0	87:0:0:0:5,5:0,0:82,83:0,0
1	230718352	.	G	A	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:0:0:0:0,0:0,0:39,39:0,0	104:1:0:0:7,7:0,0:94,95:2,2
1	231868708	rs111746051	G	T	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||547|DISC1|protein_coding|CODING|ENST00000295051|3|1),INTRON(MODIFIER||||559|DISC1|protein_coding|CODING|ENST00000537876|3|1),INTRON(MODIFIER||||579|DISC1|protein_coding|CODING|ENST00000539444|3|1),INTRON(MODIFIER||||609|DISC1|protein_coding|CODING|ENST00000535944|3|1),INTRON(MODIFIER||||678|DISC1|protein_coding|CODING|ENST00000366636|3|1),INTRON(MODIFIER||||695|DISC1|protein_coding|CODING|ENST00000535983|3|1),INTRON(MODIFIER||||755|DISC1|protein_coding|CODING|ENST00000366633|3|1),INTRON(MODIFIER||||832|DISC1|protein_coding|CODING|ENST00000366637|3|1),INTRON(MODIFIER||||854|DISC1|protein_coding|CODING|ENST00000439617|3|1);RSPOS=231868708;dbSNPBuildID=132;SSR=0;SAO=0;VP=050000080005000102000100;GENEINFO=TSNAX-DISC1:100303453|DISC1:27185;WGT=1;VC=SNV;INT;ASP;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:0:0:0:0,0:0,0:37,37:0,0	124:2:0:0:0,0:0,0:113,115:9,9
1	231868726	rs61835387	G	T	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||547|DISC1|protein_coding|CODING|ENST00000295051|3|1),INTRON(MODIFIER||||559|DISC1|protein_coding|CODING|ENST00000537876|3|1),INTRON(MODIFIER||||579|DISC1|protein_coding|CODING|ENST00000539444|3|1),INTRON(MODIFIER||||609|DISC1|protein_coding|CODING|ENST00000535944|3|1),INTRON(MODIFIER||||678|DISC1|protein_coding|CODING|ENST00000366636|3|1),INTRON(MODIFIER||||695|DISC1|protein_coding|CODING|ENST00000535983|3|1),INTRON(MODIFIER||||755|DISC1|protein_coding|CODING|ENST00000366633|3|1),INTRON(MODIFIER||||832|DISC1|protein_coding|CODING|ENST00000366637|3|1),INTRON(MODIFIER||||854|DISC1|protein_coding|CODING|ENST00000439617|3|1);RSPOS=231868726;dbSNPBuildID=129;SSR=16;SAO=0;VP=050000080001000102000100;GENEINFO=TSNAX-DISC1:100303453|DISC1:27185;WGT=1;VC=SNV;INT;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:0:0:0:0,0:0,0:40,40:0,0	121:3:0:0:0,0:0,0:110,112:8,9
1	231868730	rs61835412	A	G	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||547|DISC1|protein_coding|CODING|ENST00000295051|3|1),INTRON(MODIFIER||||559|DISC1|protein_coding|CODING|ENST00000537876|3|1),INTRON(MODIFIER||||579|DISC1|protein_coding|CODING|ENST00000539444|3|1),INTRON(MODIFIER||||609|DISC1|protein_coding|CODING|ENST00000535944|3|1),INTRON(MODIFIER||||678|DISC1|protein_coding|CODING|ENST00000366636|3|1),INTRON(MODIFIER||||695|DISC1|protein_coding|CODING|ENST00000535983|3|1),INTRON(MODIFIER||||755|DISC1|protein_coding|CODING|ENST00000366633|3|1),INTRON(MODIFIER||||832|DISC1|protein_coding|CODING|ENST00000366637|3|1),INTRON(MODIFIER||||854|DISC1|protein_coding|CODING|ENST00000439617|3|1);RSPOS=231868730;dbSNPBuildID=129;SSR=16;SAO=0;VP=05000008000500010e000100;GENEINFO=TSNAX-DISC1:100303453|DISC1:27185;WGT=1;VC=SNV;INT;ASP;GNO;KGPilot123;KGPROD;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:0:0:0:40,40:0,0:0,0:0,0	120:3:0:0:106,108:0,0:11,12:0,0
1	232468358	rs9701508	T	C	.	PASS	NT=ref;QSS=27;QSS_NT=27;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=232468358;dbSNPBuildID=119;SSR=0;SAO=0;VP=050000000001000002000100;WGT=1;VC=SNV;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	53:0:0:0:0,0:0,0:0,0:53,55	138:2:0:0:1,1:10,15:0,1:125,132
1	233705717	.	A	C	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:0:0:0:38,38:0,0:0,0:0,0	114:0:0:0:103,104:11,11:0,0:0,0
1	234923121	rs74859799	G	A	.	PASS	NT=ref;QSS=29;QSS_NT=29;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=234923121;RV;dbSNPBuildID=131;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	42:0:0:0:0,0:0,0:42,42:0,0	122:1:0:0:26,35:0,0:95,100:0,0
1	235079079	.	G	A	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:0:0:0:0,0:0,0:33,33:0,0	88:0:0:0:8,8:1,1:78,78:1,1
1	235458590	.	T	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1226|ARID4B|protein_coding|CODING|ENST00000349213|2|1),INTRON(MODIFIER||||1312|ARID4B|protein_coding|CODING|ENST00000264183|2|1),INTRON(MODIFIER||||1312|ARID4B|protein_coding|CODING|ENST00000366603|2|1),INTRON(MODIFIER||||482|ARID4B|protein_coding|CODING|ENST00000418304|2|1),INTRON(MODIFIER|||||ARID4B|nonsense_mediated_decay|CODING|ENST00000421364|2|1),INTRON(MODIFIER|||||ARID4B|retained_intron|CODING|ENST00000466653|2|1),INTRON(MODIFIER|||||ARID4B|retained_intron|CODING|ENST00000491632|2|1),UPSTREAM(MODIFIER|||||RPL23AP23|processed_pseudogene|NON_CODING|ENST00000452590||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:1:0:0:0,0:0,0:0,0:28,28	100:3:0:0:0,0:5,6:0,0:92,96
1	236202140	rs11584007	A	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1114|NID1|protein_coding|CODING|ENST00000366595|4|1),INTRON(MODIFIER||||1247|NID1|protein_coding|CODING|ENST00000264187|4|1);RSPOS=236202140;GMAF=0.0467;dbSNPBuildID=120;SSR=0;SAO=0;VP=050000080001040016000100;GENEINFO=NID1:4811;WGT=1;VC=SNV;INT;VLD;KGPhase1;KGPROD;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	14:1:0:0:13,14:0,0:0,0:0,0	77:5:0:0:53,56:0,0:0,0:19,21
1	236202145	rs183381247	T	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1114|NID1|protein_coding|CODING|ENST00000366595|4|1),INTRON(MODIFIER||||1247|NID1|protein_coding|CODING|ENST00000264187|4|1);RSPOS=236202145;GMAF=0.0307;dbSNPBuildID=135;SSR=0;SAO=0;VP=050000080005000014000100;GENEINFO=NID1:4811;WGT=1;VC=SNV;INT;ASP;KGPhase1;KGPROD	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	14:2:0:0:0,0:0,0:0,0:12,14	81:5:0:0:1,1:0,0:19,21:56,59
1	236240551	.	A	G	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	43:0:0:0:42,43:1,1:0,0:0,0	122:1:0:0:111,111:0,0:10,12:0,0
1	237669794	.	C	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||4951|RYR2|protein_coding|CODING|ENST00000542537|21|1),INTRON(MODIFIER||||4967|RYR2|protein_coding|CODING|ENST00000366574|22|1),INTRON(MODIFIER||||4973|RYR2|protein_coding|CODING|ENST00000360064|23|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:5:0:0:0,0:34,39:0,0:0,0	101:5:0:0:0,0:89,95:1,1:6,6
1	238644503	.	G	A	.	PASS	NT=ref;QSS=23;QSS_NT=23;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=EXON(MODIFIER|||||RP11-371I1.2|processed_transcript|NON_CODING|ENST00000400946|2|1),UPSTREAM(MODIFIER|||||RP11-177F15.1|processed_transcript|NON_CODING|ENST00000442726||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	45:1:0:0:0,0:0,0:44,45:0,0	104:1:0:0:11,11:0,0:92,93:0,0
1	239778660	rs12080951	C	T	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||CHRM3|processed_transcript|CODING|ENST00000468573|3|1);RSPOS=239778660;GMAF=0.1795;dbSNPBuildID=120;SSR=0;SAO=0;VP=05010000000105051f000100;WGT=1;VC=SNV;SLO;VLD;G5;HD;GNO;KGPhase1;KGPilot123;KGPROD;OTHERKG;PH3	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:1:0:0:0,0:39,40:0,0:0,0	96:1:0:0:0,0:87,87:0,1:8,8
1	240163258	.	G	A	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	48:0:0:0:0,0:0,0:48,49:0,0	104:2:0:0:4,4:1,1:97,99:0,0
1	240781025	.	G	A	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	45:2:0:0:0,0:0,0:43,45:0,0	78:2:0:0:4,4:0,0:72,74:0,0
1	241578994	.	A	T	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:0:0:0:39,42:0,0:0,1:0,0	99:0:0:0:93,94:0,0:0,0:6,6
1	242132219	.	G	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:3:0:0:0,0:0,0:28,31:0,0	71:4:0:0:7,8:0,0:60,63:0,0
1	242288598	rs12144680	C	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||444|PLD5|protein_coding|CODING|ENST00000442594|6|1),INTRON(MODIFIER||||474|PLD5|protein_coding|CODING|ENST00000427495|5|1),INTRON(MODIFIER||||536|PLD5|protein_coding|CODING|ENST00000536534|5|1),INTRON(MODIFIER|||||PLD5|nonsense_mediated_decay|CODING|ENST00000314833|4|1),INTRON(MODIFIER|||||PLD5|nonsense_mediated_decay|CODING|ENST00000366545|6|1),INTRON(MODIFIER|||||PLD5|nonsense_mediated_decay|CODING|ENST00000467561|5|1);RSPOS=242288598;GMAF=0.1268;dbSNPBuildID=120;SSR=0;SAO=0;VP=05010008000507051f000100;GENEINFO=PLD5:200150;WGT=1;VC=SNV;SLO;INT;ASP;VLD;G5A;G5;HD;GNO;KGPhase1;KGPilot123;KGPROD;OTHERKG;PH3	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:0:0:0:0,0:29,29:0,0:0,0	116:0:0:0:0,0:105,105:0,0:11,11
1	242756250	.	G	A	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:0:0:0:0,0:0,0:34,34:0,0	95:5:0:0:7,7:0,0:83,89:0,0
1	242786522	.	A	G	.	PASS	NT=ref;QSS=25;QSS_NT=25;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	50:0:0:0:50,50:0,0:0,0:0,0	124:1:0:0:113,113:0,0:10,11:0,0
1	243131941	.	A	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:0:0:0:29,30:0,0:0,0:0,0	77:0:0:0:72,74:0,0:0,0:5,6
1	245031455	.	A	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AC;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER||||806|HNRNPU|protein_coding|CODING|ENST00000444376||1),UPSTREAM(MODIFIER||||825|HNRNPU|protein_coding|CODING|ENST00000283179||1),UPSTREAM(MODIFIER|||||HNRNPU|retained_intron|CODING|ENST00000476241||1),UPSTREAM(MODIFIER|||||HNRNPU|retained_intron|CODING|ENST00000483966||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	47:6:0:0:41,47:0,1:0,0:0,0	111:8:0:0:95,105:8,8:0,0:0,0
1	245598354	.	T	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=TT->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER||||2108|KIF26B|protein_coding|CODING|ENST00000407071|4|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:0:0:0:0,0:1,2:1,1:31,33	82:2:1:0:0,0:18,20:0,0:62,66
1	246685247	rs79818523	C	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-690C23.2|processed_transcript|NON_CODING|ENST00000366308|1|1),INTRON(MODIFIER|||||RP11-690C23.4|unprocessed_pseudogene|NON_CODING|ENST00000398739|1|1);RSPOS=246685247;dbSNPBuildID=131;SSR=0;SAO=0;VP=050000080005000002000100;GENEINFO=LOC255654:255654;WGT=1;VC=SNV;INT;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:4:0:0:0,1:35,45:0,0:0,0	69:5:0:0:0,0:58,72:0,0:6,6
1	247031293	.	C	T	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||2266|AHCTF1|protein_coding|CODING|ENST00000391829|24|1),INTRON(MODIFIER||||2275|AHCTF1|protein_coding|CODING|ENST00000326225|24|1),INTRON(MODIFIER||||2301|AHCTF1|protein_coding|CODING|ENST00000366508|24|1),INTRON(MODIFIER|||||AHCTF1|processed_transcript|CODING|ENST00000470300|14|1),INTRON(MODIFIER|||||AHCTF1|processed_transcript|CODING|ENST00000483900|2|1),UPSTREAM(MODIFIER|||||AHCTF1|retained_intron|CODING|ENST00000477526||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	43:3:0:0:0,0:40,43:0,0:0,0	86:6:0:0:0,0:75,77:0,0:5,9
1	247210637	.	G	A	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||RP11-551G24.2|processed_pseudogene|NON_CODING|ENST00000439523||1),INTRON(MODIFIER||||389|ZNF670|protein_coding|CODING|ENST00000366503|1|1),INTRON(MODIFIER|||||ZNF670|nonsense_mediated_decay|CODING|ENST00000465049|1|1),INTRON(MODIFIER|||||ZNF670|nonsense_mediated_decay|CODING|ENST00000474541|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:1:0:0:0,0:0,0:37,38:0,0	101:2:0:0:5,6:0,0:94,96:0,0
1	247279206	.	G	T	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||FGFR3P6|processed_pseudogene|NON_CODING|ENST00000457012|1|1),UPSTREAM(MODIFIER||||237|C1orf229|protein_coding|CODING|ENST00000408893||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:0:0:0:0,0:0,0:37,41:0,0	91:1:0:0:0,0:0,0:84,94:6,6
1	247428656	.	G	A	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:0:0:0:0,0:0,0:40,40:0,0	85:1:0:0:5,6:0,0:77,78:2,2
1	247568989	rs10399849	G	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=247568989;dbSNPBuildID=119;SSR=0;SAO=0;VP=050000000005000102000100;WGT=1;VC=SNV;ASP;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:1:0:0:0,0:0,0:33,34:0,0	90:2:0:0:7,7:0,1:81,86:0,0
1	247597043	rs11810980	T	A	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1036|NLRP3|protein_coding|CODING|ENST00000336119|4|1),INTRON(MODIFIER||||1036|NLRP3|protein_coding|CODING|ENST00000391828|6|1),INTRON(MODIFIER||||922|NLRP3|protein_coding|CODING|ENST00000348069|3|1),INTRON(MODIFIER||||979|NLRP3|protein_coding|CODING|ENST00000366496|4|1),INTRON(MODIFIER||||979|NLRP3|protein_coding|CODING|ENST00000366497|5|1),INTRON(MODIFIER||||979|NLRP3|protein_coding|CODING|ENST00000391827|3|1);RSPOS=247597043;dbSNPBuildID=120;SSR=0;SAO=0;VP=050000080001000102000100;GENEINFO=NLRP3:114548;WGT=1;VC=SNV;INT;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	19:0:0:0:0,0:0,0:0,0:19,21	60:2:0:0:13,18:1,1:0,0:44,58
1	247597055	rs28559821	G	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1036|NLRP3|protein_coding|CODING|ENST00000336119|4|1),INTRON(MODIFIER||||1036|NLRP3|protein_coding|CODING|ENST00000391828|6|1),INTRON(MODIFIER||||922|NLRP3|protein_coding|CODING|ENST00000348069|3|1),INTRON(MODIFIER||||979|NLRP3|protein_coding|CODING|ENST00000366496|4|1),INTRON(MODIFIER||||979|NLRP3|protein_coding|CODING|ENST00000366497|5|1),INTRON(MODIFIER||||979|NLRP3|protein_coding|CODING|ENST00000391827|3|1);RSPOS=247597055;dbSNPBuildID=125;SSR=0;SAO=0;VP=050000080011000102000100;GENEINFO=NLRP3:114548;WGT=1;VC=SNV;INT;OTH;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	21:0:0:0:1,1:0,0:20,22:0,0	67:2:0:0:17,25:0,0:47,57:1,1
1	247685537	rs180819158	T	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||GCSAML-AS1|antisense|NON_CODING|ENST00000420469||1),INTRON(MODIFIER||||103|GCSAML|protein_coding|CODING|ENST00000463359|1|1),INTRON(MODIFIER||||103|GCSAML|protein_coding|CODING|ENST00000527084|1|1),INTRON(MODIFIER||||103|GCSAML|protein_coding|CODING|ENST00000527541|1|1),INTRON(MODIFIER||||115|GCSAML|protein_coding|CODING|ENST00000366489|1|1),INTRON(MODIFIER||||115|GCSAML|protein_coding|CODING|ENST00000366491|1|1),INTRON(MODIFIER||||133|GCSAML|protein_coding|CODING|ENST00000366490|1|1),INTRON(MODIFIER||||73|GCSAML|protein_coding|CODING|ENST00000529512|1|1),INTRON(MODIFIER||||79|GCSAML|protein_coding|CODING|ENST00000526896|1|1),INTRON(MODIFIER|||||GCSAML|processed_transcript|CODING|ENST00000531662|2|1);RSPOS=247685537;dbSNPBuildID=135;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:5:0:0:0,0:0,0:0,2:31,37	78:7:0:0:0,0:8,16:2,4:61,64
1	248606949	rs56275517	T	G	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||OR2T7|processed_pseudogene|NON_CODING|ENST00000460972||1),INTERGENIC(MODIFIER||||||||||1);RSPOS=248606949;dbSNPBuildID=129;SSR=0;SAO=0;VP=050100000005000102000100;WGT=1;VC=SNV;SLO;ASP;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	42:0:0:0:0,0:0,0:0,0:42,45	132:1:0:0:0,0:0,0:5,5:126,131
1	248645779	.	G	A	.	PASS	NT=ref;QSS=29;QSS_NT=29;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||RP11-407H12.8|antisense|NON_CODING|ENST00000450847||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	59:0:0:0:0,0:0,0:59,60:0,0	152:1:0:0:9,9:0,0:141,142:1,1
2	426888	rs78519454	C	T	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||AC105393.2|lincRNA|NON_CODING|ENST00000449119||1),DOWNSTREAM(MODIFIER|||||AC105393.2|lincRNA|NON_CODING|ENST00000449621||1),INTERGENIC(MODIFIER||||||||||1);RSPOS=426888;dbSNPBuildID=131;SSR=0;SAO=0;VP=050000000001040102000100;WGT=1;VC=SNV;VLD;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	24:5:0:0:0,0:19,31:0,2:0,1	26:3:0:0:0,0:15,20:1,2:7,10
2	632615	.	G	C	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	41:1:0:0:0,0:0,0:40,41:0,0	115:3:0:0:0,0:13,14:98,99:1,2
2	703410	.	G	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:0:0:0:0,0:0,0:32,33:0,0	101:0:0:0:7,11:0,0:94,94:0,0
2	740579	rs111448389	C	T	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||AC116609.2|lincRNA|NON_CODING|ENST00000425850||1),UPSTREAM(MODIFIER|||||AC116609.3|lincRNA|NON_CODING|ENST00000431542||1);RSPOS=740579;dbSNPBuildID=132;SSR=0;SAO=0;VP=050000000001000102000100;WGT=1;VC=SNV;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	95:33:0:0:0,0:61,130:0,0:1,3	229:68:0:0:1,2:152,282:0,4:8,37
2	874187	.	T	C	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:2:0:0:0,0:0,0:0,0:29,33	79:8:0:0:0,0:11,20:0,0:60,63
2	1112548	.	T	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||412|SNTG2|protein_coding|CODING|ENST00000407292|2|1),INTRON(MODIFIER||||539|SNTG2|protein_coding|CODING|ENST00000308624|4|1),INTRON(MODIFIER|||||SNTG2|nonsense_mediated_decay|CODING|ENST00000450962|5|1),INTRON(MODIFIER|||||SNTG2|nonsense_mediated_decay|CODING|ENST00000452177|5|1),INTRON(MODIFIER|||||SNTG2|processed_transcript|CODING|ENST00000463442|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	49:1:0:0:0,0:1,1:1,1:46,48	93:7:0:0:0,0:10,12:2,2:74,82
2	1163971	rs28377122	A	G	.	PASS	NT=ref;QSS=24;QSS_NT=24;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||SNTG2|nonsense_mediated_decay|CODING|ENST00000450962||1),INTRON(MODIFIER||||412|SNTG2|protein_coding|CODING|ENST00000407292|2|1),INTRON(MODIFIER||||539|SNTG2|protein_coding|CODING|ENST00000308624|7|1),INTRON(MODIFIER|||||SNTG2|processed_transcript|CODING|ENST00000463442|5|1),INTRON(MODIFIER|||||SNTG2|processed_transcript|CODING|ENST00000467759|2|1),INTRON(MODIFIER|||||SNTG2|processed_transcript|CODING|ENST00000475201|2|1),INTRON(MODIFIER|||||SNTG2|processed_transcript|CODING|ENST00000494178|2|1);RSPOS=1163971;dbSNPBuildID=125;SSR=0;SAO=0;VP=050000080001000002000100;GENEINFO=SNTG2:54221;WGT=1;VC=SNV;INT;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	44:1:0:0:43,50:0,0:0,0:0,0	74:5:0:0:57,71:2,5:10,13:0,1
2	1238886	.	T	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=TT->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER||||412|SNTG2|protein_coding|CODING|ENST00000407292|3|1),INTRON(MODIFIER||||539|SNTG2|protein_coding|CODING|ENST00000308624|9|1),INTRON(MODIFIER|||||SNTG2|processed_transcript|CODING|ENST00000494178|4|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	66:3:0:0:0,0:1,3:0,2:62,62	117:8:0:0:0,0:10,11:0,3:99,106
2	1532508	.	C	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->CG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER||||154|TPO|protein_coding|CODING|ENST00000425083|3|1),INTRON(MODIFIER||||363|TPO|protein_coding|CODING|ENST00000469607|5|1),INTRON(MODIFIER||||760|TPO|protein_coding|CODING|ENST00000349624|14|1),INTRON(MODIFIER||||760|TPO|protein_coding|CODING|ENST00000382198|13|1),INTRON(MODIFIER||||864|TPO|protein_coding|CODING|ENST00000422464|11|1),INTRON(MODIFIER||||876|TPO|protein_coding|CODING|ENST00000382201|14|1),INTRON(MODIFIER||||889|TPO|protein_coding|CODING|ENST00000346956|14|1),INTRON(MODIFIER||||929|TPO|protein_coding|CODING|ENST00000337415|15|1),INTRON(MODIFIER||||933|TPO|protein_coding|CODING|ENST00000329066|15|1),INTRON(MODIFIER||||933|TPO|protein_coding|CODING|ENST00000345913|15|1),INTRON(MODIFIER|||||TPO|processed_transcript|CODING|ENST00000479902|2|1),INTRON(MODIFIER|||||TPO|processed_transcript|CODING|ENST00000497517|5|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	47:8:0:0:0,0:39,48:0,2:0,0	139:25:0:0:0,0:109,138:5,14:0,0
2	1581198	.	G	T	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||AC141930.2|lincRNA|NON_CODING|ENST00000419028|1|1),INTRON(MODIFIER|||||AC144450.1|antisense|NON_CODING|ENST00000438247|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	43:0:0:0:0,0:0,0:43,43:0,0	117:3:0:0:0,0:0,0:103,106:11,11
2	1710491	rs79349141	G	C	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1479|PXDN|protein_coding|CODING|ENST00000252804|1|1),INTRON(MODIFIER||||223|PXDN|protein_coding|CODING|ENST00000425171|1|1),INTRON(MODIFIER|||||PXDN|processed_transcript|CODING|ENST00000485177|1|1);RSPOS=1710491;dbSNPBuildID=131;SSR=0;SAO=0;VP=050000080001040102000100;GENEINFO=PXDN:7837;WGT=1;VC=SNV;INT;VLD;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	23:1:0:0:0,0:0,0:22,29:0,0	48:4:0:0:0,0:8,11:35,48:1,1
2	1833530	.	C	T	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=CC->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=DOWNSTREAM(MODIFIER|||||AC093390.1|antisense|NON_CODING|ENST00000426976||1),INTRON(MODIFIER||||1184|MYT1L|protein_coding|CODING|ENST00000428368|21|1),INTRON(MODIFIER||||1186|MYT1L|protein_coding|CODING|ENST00000399161|21|1),INTRON(MODIFIER||||184|MYT1L|protein_coding|CODING|ENST00000407844|3|1),INTRON(MODIFIER||||202|MYT1L|protein_coding|CODING|ENST00000399157|2|1),INTRON(MODIFIER|||||MYT1L|processed_transcript|CODING|ENST00000471668|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	17:0:0:0:0,0:17,19:0,0:0,1	49:0:0:0:0,0:35,41:0,0:14,17
2	1925670	.	C	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1184|MYT1L|protein_coding|CODING|ENST00000428368|10|1),INTRON(MODIFIER||||1186|MYT1L|protein_coding|CODING|ENST00000399161|10|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:0:0:0:0,0:32,32:0,0:0,0	97:2:0:0:0,0:85,87:0,0:10,10
2	1943941	.	G	C	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1184|MYT1L|protein_coding|CODING|ENST00000428368|9|1),INTRON(MODIFIER||||1186|MYT1L|protein_coding|CODING|ENST00000399161|9|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	42:0:0:0:0,0:0,0:42,43:0,0	93:1:0:0:0,0:6,7:85,89:1,1
2	2000345	rs13022323	T	C	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||MYT1L|processed_transcript|CODING|ENST00000479156||1),INTRON(MODIFIER||||1184|MYT1L|protein_coding|CODING|ENST00000428368|5|1),INTRON(MODIFIER||||1186|MYT1L|protein_coding|CODING|ENST00000399161|5|1);RSPOS=2000345;RV;dbSNPBuildID=121;SSR=0;SAO=0;VP=050000080001040102000100;GENEINFO=MYT1L:23040;WGT=1;VC=SNV;INT;VLD;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:3:0:0:0,0:0,1:1,2:27,37	71:7:0:0:0,0:11,16:1,1:52,65
2	3024149	.	T	C	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||AC019118.2|lincRNA|NON_CODING|ENST00000457478|3|1),UPSTREAM(MODIFIER|||||AC074264.1|miRNA|NON_CODING|ENST00000584133||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:0:0:0:0,0:0,0:0,0:39,39	89:0:0:0:0,0:4,6:0,0:85,85
2	3038804	.	G	A	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||AC019118.2|lincRNA|NON_CODING|ENST00000457478|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	41:5:0:0:0,0:0,0:36,42:0,0	114:8:0:0:10,11:1,1:95,109:0,0
2	3174427	.	C	G	.	PASS	NT=ref;QSS=29;QSS_NT=29;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	67:8:0:0:0,1:59,67:0,0:0,1	131:8:0:0:0,0:113,122:6,6:4,5
2	3174432	.	A	G	.	PASS	NT=ref;QSS=27;QSS_NT=27;SGT=AA->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	64:8:0:0:56,62:0,3:0,1:0,0	126:6:0:0:113,121:1,1:6,6:0,0
2	3188409	.	C	A	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||387|TSSC1|protein_coding|CODING|ENST00000382125||1),DOWNSTREAM(MODIFIER||||414|TSSC1|protein_coding|CODING|ENST00000398659||1),DOWNSTREAM(MODIFIER|||||TSSC1|nonsense_mediated_decay|CODING|ENST00000455162||1),DOWNSTREAM(MODIFIER|||||TSSC1|processed_transcript|CODING|ENST00000478754||1),DOWNSTREAM(MODIFIER|||||TSSC1|retained_intron|CODING|ENST00000496433||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	49:2:0:0:0,0:47,51:0,0:0,0	110:0:0:0:6,6:104,108:0,0:0,0
2	4244062	.	C	A	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:0:0:0:0,0:35,35:0,0:0,0	108:0:0:0:8,8:99,99:1,1:0,0
2	5623828	.	C	T	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	41:0:0:0:0,0:41,42:0,0:0,0	111:0:0:0:0,0:102,103:0,0:9,9
2	9289455	.	C	T	.	PASS	NT=ref;QSS=25;QSS_NT=25;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||RP11-734K21.4|lincRNA|NON_CODING|ENST00000474561||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	51:2:0:0:0,0:49,51:0,0:0,0	98:1:0:0:0,0:92,93:0,0:5,5
2	10727370	rs79520083	C	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||638|NOL10|protein_coding|CODING|ENST00000345985|18|1),INTRON(MODIFIER||||638|NOL10|protein_coding|CODING|ENST00000542668|18|1),INTRON(MODIFIER||||662|NOL10|protein_coding|CODING|ENST00000538384|18|1),INTRON(MODIFIER||||688|NOL10|protein_coding|CODING|ENST00000381685|19|1),UPSTREAM(MODIFIER|||||AC092687.5|antisense|NON_CODING|ENST00000414538||1);RSPOS=10727370;GMAF=0.1996;dbSNPBuildID=131;SSR=0;SAO=0;VP=050000080005040116000100;GENEINFO=NOL10:79954;WGT=1;VC=SNV;INT;ASP;VLD;GNO;KGPhase1;KGPROD;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	14:1:1:0:0,0:13,14:0,0:0,0	51:2:0:0:0,0:38,40:0,0:11,12
2	11094227	.	A	T	.	PASS	NT=ref;QSS=27;QSS_NT=27;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	77:5:0:0:72,129:0,0:0,3:0,2	193:15:0:0:169,263:0,0:1,1:8,16
2	13199377	.	C	G	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:0:0:0:0,0:36,36:0,0:0,0	121:1:0:0:0,0:107,108:13,13:0,0
2	13822457	.	G	C	.	PASS	NT=ref;QSS=24;QSS_NT=24;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	47:0:0:0:0,0:0,0:47,47:0,0	121:2:0:0:0,0:12,12:106,108:1,1
2	15682372	rs12998629	T	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||2251|NBAS|protein_coding|CODING|ENST00000441750|6|1),INTRON(MODIFIER||||2371|NBAS|protein_coding|CODING|ENST00000281513|6|1);RSPOS=15682372;dbSNPBuildID=121;SSR=0;SAO=0;VP=050000080005000002000100;GENEINFO=NBAS:51594;WGT=1;VC=SNV;INT;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	16:1:0:0:0,0:0,0:0,0:15,18	43:0:0:0:0,0:8,11:0,0:35,39
2	16342046	.	T	C	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=TT->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	47:0:0:0:0,0:0,0:0,0:47,47	101:3:0:0:0,0:4,4:0,0:94,99
2	17141672	.	C	T	.	PASS	NT=ref;QSS=25;QSS_NT=25;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	50:0:0:0:1,1:49,49:0,0:0,0	96:0:0:0:0,0:90,90:0,0:6,6
2	18773388	.	G	A	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER||||204|NT5C1B|protein_coding|CODING|ENST00000416783||1),UPSTREAM(MODIFIER||||532|NT5C1B-RDH14|protein_coding|CODING|ENST00000444297||1),UPSTREAM(MODIFIER||||550|NT5C1B|protein_coding|CODING|ENST00000304081||1),UPSTREAM(MODIFIER||||602|NT5C1B-RDH14|protein_coding|CODING|ENST00000532967||1),UPSTREAM(MODIFIER||||610|NT5C1B|protein_coding|CODING|ENST00000359846||1),UPSTREAM(MODIFIER|||||NT5C1B|nonsense_mediated_decay|CODING|ENST00000406971||1),UPSTREAM(MODIFIER|||||NT5C1B|processed_transcript|CODING|ENST00000460052||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:0:0:0:0,0:0,0:38,38:0,0	94:0:0:0:4,4:0,0:90,90:0,0
2	19269374	.	C	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||AC092594.1|lincRNA|NON_CODING|ENST00000418165|3|1),INTRON(MODIFIER|||||AC092594.1|lincRNA|NON_CODING|ENST00000432142|3|1),INTRON(MODIFIER|||||AC092594.1|lincRNA|NON_CODING|ENST00000449124|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:0:0:0:0,0:35,35:0,0:0,0	101:1:0:0:0,0:96,97:4,4:0,0
2	19704982	.	A	G	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:0:0:0:31,31:0,0:0,0:0,0	88:0:0:0:77,77:2,2:9,9:0,0
2	21785473	.	A	C	.	PASS	NT=ref;QSS=26;QSS_NT=26;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||AC011752.1|lincRNA|NON_CODING|ENST00000451476||1),INTRON(MODIFIER|||||AC067959.1|lincRNA|NON_CODING|ENST00000435237|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	42:0:0:0:42,42:0,0:0,0:0,0	94:1:0:0:78,79:15,15:0,0:0,0
2	22686784	.	C	G	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||AC068490.2|lincRNA|NON_CODING|ENST00000450551|1|1),INTRON(MODIFIER|||||AC096570.2|lincRNA|NON_CODING|ENST00000419013|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	42:0:0:0:0,0:42,42:0,0:0,0	97:0:0:0:1,1:92,92:4,4:0,0
2	22827223	.	G	A	.	PASS	NT=ref;QSS=25;QSS_NT=25;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	50:0:0:0:0,0:0,0:50,50:0,0	89:1:0:0:8,8:0,0:80,81:0,0
2	24030927	rs13009370	C	T	.	PASS	NT=ref;QSS=19;QSS_NT=18;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1458|ATAD2B|protein_coding|CODING|ENST00000238789|18|1),INTRON(MODIFIER|||||ATAD2B|processed_transcript|CODING|ENST00000474583|7|1),INTRON(MODIFIER|||||ATAD2B|processed_transcript|CODING|ENST00000498006|2|1);RSPOS=24030927;GMAF=0.1378;dbSNPBuildID=121;SSR=0;SAO=0;VP=050000080001040016000100;GENEINFO=ATAD2B:54454;WGT=1;VC=SNV;INT;VLD;KGPhase1;KGPROD;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	20:0:0:0:1,1:19,19:0,0:0,0	34:1:0:0:1,2:25,25:0,0:7,8
2	24393580	.	T	C	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||319|FAM228B|protein_coding|CODING|ENST00000407625||1),DOWNSTREAM(MODIFIER||||323|FAM228B|protein_coding|CODING|ENST00000420135||1),DOWNSTREAM(MODIFIER||||40|FAM228B|protein_coding|CODING|ENST00000448919||1),DOWNSTREAM(MODIFIER|||||FAM228B|nonsense_mediated_decay|CODING|ENST00000417898||1),DOWNSTREAM(MODIFIER|||||FAM228B|nonsense_mediated_decay|CODING|ENST00000457370||1),DOWNSTREAM(MODIFIER|||||FAM228B|processed_transcript|CODING|ENST00000468799||1),INTRON(MODIFIER|||||AC008073.7|antisense|NON_CODING|ENST00000428344|1|1),INTRON(MODIFIER|||||AC008073.7|antisense|NON_CODING|ENST00000438414|1|1),INTRON(MODIFIER|||||RP11-507M3.1|nonsense_mediated_decay|NON_CODING|ENST00000584973|6|1),UPSTREAM(MODIFIER||||206|FAM228A|protein_coding|CODING|ENST00000295150||1),UPSTREAM(MODIFIER|||||FAM228A|nonsense_mediated_decay|CODING|ENST00000456591||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:0:0:0:0,0:0,0:0,0:32,32	76:0:0:0:0,0:9,10:0,0:67,68
2	25297692	.	G	A	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||728|EFR3B|protein_coding|CODING|ENST00000401432|1|1),INTRON(MODIFIER||||782|EFR3B|protein_coding|CODING|ENST00000402191|1|1),INTRON(MODIFIER||||817|EFR3B|protein_coding|CODING|ENST00000403714|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	41:0:0:0:0,0:0,0:41,41:0,0	91:1:0:0:10,10:0,0:80,81:0,0
2	29442261	.	C	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||152|ALK|protein_coding|CODING|ENST00000453137||1),INTRON(MODIFIER||||1620|ALK|protein_coding|CODING|ENST00000389048|23|1),INTRON(MODIFIER||||450|ALK|protein_coding|CODING|ENST00000431873|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:0:0:0:0,0:32,32:0,0:0,0	100:0:0:0:9,9:91,91:0,0:0,0
2	29454886	.	G	A	.	PASS	NT=ref;QSS=25;QSS_NT=25;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1620|ALK|protein_coding|CODING|ENST00000389048|15|1),INTRON(MODIFIER||||450|ALK|protein_coding|CODING|ENST00000431873|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	50:0:0:0:0,0:0,0:50,50:0,0	92:0:0:0:9,9:0,0:83,83:0,0
2	30963936	.	G	A	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||CAPN13|nonsense_mediated_decay|CODING|ENST00000458085||1),DOWNSTREAM(MODIFIER|||||CAPN13|retained_intron|CODING|ENST00000465450||1),INTRON(MODIFIER||||669|CAPN13|protein_coding|CODING|ENST00000295055|15|1),INTRON(MODIFIER||||669|CAPN13|protein_coding|CODING|ENST00000534090|15|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	42:0:0:0:0,0:0,0:42,42:0,0	110:0:0:0:10,10:0,0:100,101:0,0
2	32672454	.	T	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||4857|BIRC6|protein_coding|CODING|ENST00000421745|21|1),INTRON(MODIFIER|||||BIRC6|retained_intron|CODING|ENST00000483194|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	70:8:1:0:0,1:2,5:2,4:58,80	111:5:0:0:1,2:8,11:2,3:95,131
2	34596350	.	G	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:0:0:0:0,0:0,0:35,35:0,0	102:1:0:0:6,6:1,1:94,95:0,0
2	35073911	.	C	A	.	PASS	NT=ref;QSS=27;QSS_NT=27;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||AC012593.1|lincRNA|NON_CODING|ENST00000453451|2|1),INTRON(MODIFIER|||||AC012593.1|lincRNA|NON_CODING|ENST00000585391|1|1),INTRON(MODIFIER|||||AC012593.1|lincRNA|NON_CODING|ENST00000586769|1|1),INTRON(MODIFIER|||||AC012593.1|lincRNA|NON_CODING|ENST00000588650|1|1),INTRON(MODIFIER|||||AC012593.1|lincRNA|NON_CODING|ENST00000588944|1|1),INTRON(MODIFIER|||||AC012593.1|lincRNA|NON_CODING|ENST00000591221|1|1),INTRON(MODIFIER|||||AC012593.1|lincRNA|NON_CODING|ENST00000592523|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	45:0:0:0:0,0:45,45:0,0:0,0	99:0:0:0:15,15:84,84:0,0:0,0
2	35422304	.	T	G	.	PASS	NT=ref;QSS=23;QSS_NT=23;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	48:0:0:0:0,0:0,0:0,0:48,48	105:1:0:0:0,0:0,0:5,5:99,100
2	39349329	.	A	G	.	PASS	NT=ref;QSS=23;QSS_NT=23;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||101|SOS1|protein_coding|CODING|ENST00000451331|1|1),INTRON(MODIFIER||||314|SOS1|protein_coding|CODING|ENST00000428721|1|1),UPSTREAM(MODIFIER||||1318|SOS1|protein_coding|CODING|ENST00000395038||1),UPSTREAM(MODIFIER||||1333|SOS1|protein_coding|CODING|ENST00000402219||1),UPSTREAM(MODIFIER||||1333|SOS1|protein_coding|CODING|ENST00000426016||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	46:1:0:0:45,46:0,0:0,0:0,0	131:1:0:0:123,124:0,0:7,8:0,0
2	39901343	.	T	A	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||297|TMEM178A|protein_coding|CODING|ENST00000281961|1|1),INTRON(MODIFIER|||||TMEM178A|processed_transcript|CODING|ENST00000437068|1|1),INTRON(MODIFIER|||||TMEM178A|processed_transcript|CODING|ENST00000482239|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	42:1:0:0:0,0:0,0:0,0:41,42	113:0:0:0:6,6:0,0:0,0:107,107
2	40543375	.	T	G	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||937|SLC8A1|protein_coding|CODING|ENST00000402441|2|1),INTRON(MODIFIER||||937|SLC8A1|protein_coding|CODING|ENST00000405269|2|1),INTRON(MODIFIER||||937|SLC8A1|protein_coding|CODING|ENST00000406391|1|1),INTRON(MODIFIER||||937|SLC8A1|protein_coding|CODING|ENST00000406785|2|1),INTRON(MODIFIER||||937|SLC8A1|protein_coding|CODING|ENST00000542024|1|1),INTRON(MODIFIER||||965|SLC8A1|protein_coding|CODING|ENST00000408028|1|1),INTRON(MODIFIER||||968|SLC8A1|protein_coding|CODING|ENST00000405901|1|1),INTRON(MODIFIER||||968|SLC8A1|protein_coding|CODING|ENST00000542756|2|1),INTRON(MODIFIER||||973|SLC8A1|protein_coding|CODING|ENST00000332839|1|1),INTRON(MODIFIER||||973|SLC8A1|protein_coding|CODING|ENST00000403092|2|1),INTRON(MODIFIER|||||SLC8A1|nonsense_mediated_decay|CODING|ENST00000407929|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	43:0:0:0:0,0:0,0:0,0:43,43	113:1:0:0:0,0:1,1:13,13:98,99
2	42210423	rs77314924	A	T	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=42210423;dbSNPBuildID=131;SSR=0;SAO=0;VP=050000000001000102000100;WGT=1;VC=SNV;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:1:0:0:32,38:0,0:0,0:0,0	67:3:0:0:55,67:0,0:0,0:9,12
2	42540385	.	C	T	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||245|EML4|protein_coding|CODING|ENST00000453191|4|1),INTRON(MODIFIER||||923|EML4|protein_coding|CODING|ENST00000402711|16|1),INTRON(MODIFIER||||981|EML4|protein_coding|CODING|ENST00000318522|17|1),INTRON(MODIFIER||||992|EML4|protein_coding|CODING|ENST00000401738|18|1),INTRON(MODIFIER|||||EML4|retained_intron|CODING|ENST00000406175|8|1),UPSTREAM(MODIFIER|||||EML4|processed_transcript|CODING|ENST00000472632||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:0:0:0:0,0:38,38:0,0:0,0	114:0:0:0:0,0:107,107:0,0:7,7
2	43394294	rs201289481	G	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1097|THADA|protein_coding|CODING|ENST00000330266|19|1);RSPOS=43394294;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	27:0:0:0:0,0:0,0:27,27:0,0	81:4:0:0:5,6:0,1:72,75:0,0
2	44516200	.	C	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->CG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER||||142|SLC3A1|protein_coding|CODING|ENST00000427285|2|1),INTRON(MODIFIER||||391|SLC3A1|protein_coding|CODING|ENST00000410056|4|1),INTRON(MODIFIER||||407|SLC3A1|protein_coding|CODING|ENST00000409380|1|1),INTRON(MODIFIER||||502|SLC3A1|protein_coding|CODING|ENST00000409741|4|1),INTRON(MODIFIER||||564|SLC3A1|protein_coding|CODING|ENST00000409229|4|1),INTRON(MODIFIER||||564|SLC3A1|protein_coding|CODING|ENST00000409387|4|1),INTRON(MODIFIER||||685|SLC3A1|protein_coding|CODING|ENST00000260649|4|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:1:0:0:0,0:39,41:0,0:0,0	83:1:0:0:0,1:77,78:5,5:0,0
2	45923012	rs143724402	C	T	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||126|PRKCE|protein_coding|CODING|ENST00000421201|2|1),INTRON(MODIFIER||||737|PRKCE|protein_coding|CODING|ENST00000306156|1|1),INTRON(MODIFIER|||||PRKCE|processed_transcript|CODING|ENST00000462720|1|1),INTRON(MODIFIER|||||PRKCE|processed_transcript|CODING|ENST00000467135|2|1),INTRON(MODIFIER|||||PRKCE|processed_transcript|CODING|ENST00000476675|3|1),INTRON(MODIFIER|||||PRKCE|processed_transcript|CODING|ENST00000480453|1|1),UPSTREAM(MODIFIER|||||PRKCE|processed_transcript|CODING|ENST00000485176||1),UPSTREAM(MODIFIER|||||PRKCE|processed_transcript|CODING|ENST00000497602||1);RSPOS=45923012;GMAF=0.0046;dbSNPBuildID=134;SSR=0;SAO=0;VP=050000080005000014000100;GENEINFO=PRKCE:5581;WGT=1;VC=SNV;INT;ASP;KGPhase1;KGPROD	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:0:0:0:1,1:38,38:0,0:0,0	116:0:0:0:0,0:102,102:0,0:14,14
2	47660159	.	C	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||868|MSH2|protein_coding|CODING|ENST00000543555|8|1),INTRON(MODIFIER||||921|MSH2|protein_coding|CODING|ENST00000406134|7|1),INTRON(MODIFIER||||934|MSH2|protein_coding|CODING|ENST00000233146|7|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:1:0:0:0,0:31,36:1,2:0,0	73:4:0:0:0,0:62,76:2,2:5,5
2	48653992	.	T	C	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	46:1:0:0:0,0:0,0:0,0:45,46	90:0:0:0:0,0:5,5:1,1:84,85
2	49602976	.	C	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:0:0:0:0,0:35,36:0,0:0,0	109:0:0:0:8,14:100,100:1,1:0,0
2	50041668	.	C	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	28:0:0:0:0,0:28,28:0,0:0,0	110:0:0:0:0,0:102,102:0,0:8,8
2	50220431	.	G	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1477|NRXN1|protein_coding|CODING|ENST00000406316|20|1),INTRON(MODIFIER||||1477|NRXN1|protein_coding|CODING|ENST00000406859|21|1),INTRON(MODIFIER||||1499|NRXN1|protein_coding|CODING|ENST00000402717|21|1),INTRON(MODIFIER||||1499|NRXN1|protein_coding|CODING|ENST00000405472|20|1),INTRON(MODIFIER||||1507|NRXN1|protein_coding|CODING|ENST00000401669|21|1),INTRON(MODIFIER||||1547|NRXN1|protein_coding|CODING|ENST00000404971|22|1),INTRON(MODIFIER||||442|NRXN1|protein_coding|CODING|ENST00000342183|4|1),INTRON(MODIFIER||||495|NRXN1|protein_coding|CODING|ENST00000401710|7|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:1:0:0:0,0:0,0:30,31:0,0	104:0:0:0:0,0:0,0:95,95:9,9
2	50304037	.	G	T	.	PASS	NT=ref;QSS=23;QSS_NT=23;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1477|NRXN1|protein_coding|CODING|ENST00000406316|19|1),INTRON(MODIFIER||||1477|NRXN1|protein_coding|CODING|ENST00000406859|20|1),INTRON(MODIFIER||||1499|NRXN1|protein_coding|CODING|ENST00000402717|19|1),INTRON(MODIFIER||||1499|NRXN1|protein_coding|CODING|ENST00000405472|18|1),INTRON(MODIFIER||||1507|NRXN1|protein_coding|CODING|ENST00000401669|19|1),INTRON(MODIFIER||||1547|NRXN1|protein_coding|CODING|ENST00000404971|20|1),INTRON(MODIFIER||||442|NRXN1|protein_coding|CODING|ENST00000342183|3|1),INTRON(MODIFIER||||495|NRXN1|protein_coding|CODING|ENST00000401710|6|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	45:0:0:0:0,0:0,0:45,45:0,0	107:0:0:0:0,0:0,0:102,102:5,5
2	50306104	.	C	A	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1477|NRXN1|protein_coding|CODING|ENST00000406316|19|1),INTRON(MODIFIER||||1477|NRXN1|protein_coding|CODING|ENST00000406859|20|1),INTRON(MODIFIER||||1499|NRXN1|protein_coding|CODING|ENST00000402717|19|1),INTRON(MODIFIER||||1499|NRXN1|protein_coding|CODING|ENST00000405472|18|1),INTRON(MODIFIER||||1507|NRXN1|protein_coding|CODING|ENST00000401669|19|1),INTRON(MODIFIER||||1547|NRXN1|protein_coding|CODING|ENST00000404971|20|1),INTRON(MODIFIER||||442|NRXN1|protein_coding|CODING|ENST00000342183|3|1),INTRON(MODIFIER||||495|NRXN1|protein_coding|CODING|ENST00000401710|6|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:0:0:0:0,0:38,38:0,0:0,0	101:1:0:0:12,12:88,89:0,0:0,0
2	50497255	.	G	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1477|NRXN1|protein_coding|CODING|ENST00000406316|17|1),INTRON(MODIFIER||||1477|NRXN1|protein_coding|CODING|ENST00000406859|18|1),INTRON(MODIFIER||||1499|NRXN1|protein_coding|CODING|ENST00000402717|17|1),INTRON(MODIFIER||||1499|NRXN1|protein_coding|CODING|ENST00000405472|16|1),INTRON(MODIFIER||||1507|NRXN1|protein_coding|CODING|ENST00000401669|17|1),INTRON(MODIFIER||||1547|NRXN1|protein_coding|CODING|ENST00000404971|18|1),INTRON(MODIFIER||||442|NRXN1|protein_coding|CODING|ENST00000342183|1|1),INTRON(MODIFIER||||495|NRXN1|protein_coding|CODING|ENST00000401710|4|1),INTRON(MODIFIER|||||NRXN1|processed_transcript|CODING|ENST00000331040|11|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:3:0:0:0,0:0,0:27,30:0,0	111:1:0:0:5,5:0,0:105,106:0,0
2	51044491	.	T	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1477|NRXN1|protein_coding|CODING|ENST00000406316|5|1),INTRON(MODIFIER||||1477|NRXN1|protein_coding|CODING|ENST00000406859|5|1),INTRON(MODIFIER||||1499|NRXN1|protein_coding|CODING|ENST00000402717|5|1),INTRON(MODIFIER||||1499|NRXN1|protein_coding|CODING|ENST00000405472|5|1),INTRON(MODIFIER||||1507|NRXN1|protein_coding|CODING|ENST00000401669|5|1),INTRON(MODIFIER||||1547|NRXN1|protein_coding|CODING|ENST00000404971|6|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:2:0:0:0,0:0,0:0,0:30,32	113:1:0:0:10,10:0,0:0,0:102,103
2	51920179	.	G	C	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||AC007682.1|processed_transcript|NON_CODING|ENST00000440698|5|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:0:0:0:0,0:0,0:37,37:0,0	102:0:0:0:0,0:8,8:94,95:0,0
2	52873305	.	T	A	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:0:0:0:0,0:0,0:0,0:35,35	103:0:0:0:11,11:0,0:0,0:92,92
2	57177464	.	T	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:0:0:0:0,0:0,0:0,0:33,33	99:1:0:0:8,8:0,0:0,0:90,91
2	58754866	rs200460648	T	G	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||AC007092.1|lincRNA|NON_CODING|ENST00000422723|2|1),INTRON(MODIFIER|||||AC007092.1|lincRNA|NON_CODING|ENST00000427421|1|1),INTRON(MODIFIER|||||AC007092.1|lincRNA|NON_CODING|ENST00000429095|2|1),INTRON(MODIFIER|||||AC007092.1|lincRNA|NON_CODING|ENST00000429664|1|1),INTRON(MODIFIER|||||AC007092.1|lincRNA|NON_CODING|ENST00000449448|1|1),INTRON(MODIFIER|||||AC007092.1|lincRNA|NON_CODING|ENST00000452840|2|1),INTRON(MODIFIER|||||AC007092.1|lincRNA|NON_CODING|ENST00000455219|2|1);RSPOS=58754866;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000080005000002000100;WGT=1;VC=SNV;INT;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:0:0:0:0,0:0,0:0,0:36,37	97:3:0:0:0,0:0,0:7,9:87,88
2	64197444	.	G	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||824|VPS54|protein_coding|CODING|ENST00000354504|2|1),INTRON(MODIFIER||||965|VPS54|protein_coding|CODING|ENST00000409558|4|1),INTRON(MODIFIER||||965|VPS54|protein_coding|CODING|ENST00000483277|5|1),INTRON(MODIFIER||||977|VPS54|protein_coding|CODING|ENST00000272322|4|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:0:0:0:0,0:0,0:32,33:0,0	103:3:0:0:0,0:0,0:93,100:7,9
2	65256430	.	G	C	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||AC007386.4|antisense|NON_CODING|ENST00000415327||1),DOWNSTREAM(MODIFIER|||||AC007386.4|antisense|NON_CODING|ENST00000430134||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:0:0:0:0,0:0,0:39,39:0,0	82:1:0:0:0,0:11,11:70,72:0,0
2	65676075	rs75813168	A	G	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||AC012370.3|lincRNA|NON_CODING|ENST00000453714||1),INTRON(MODIFIER|||||AC074391.1|processed_transcript|NON_CODING|ENST00000377977|1|1),INTRON(MODIFIER|||||AC074391.1|processed_transcript|NON_CODING|ENST00000536804|1|1);RSPOS=65676075;dbSNPBuildID=131;SSR=0;SAO=0;VP=050000000001000102000100;WGT=1;VC=SNV;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:2:0:0:36,39:0,0:0,0:0,0	92:1:0:0:82,86:0,0:9,9:0,0
2	65800040	.	C	G	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||AC074391.1|processed_transcript|NON_CODING|ENST00000377977|4|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	42:0:0:0:0,0:42,42:0,0:0,0	93:4:0:0:0,0:82,86:7,9:0,0
2	65827995	.	C	A	.	PASS	NT=ref;QSS=29;QSS_NT=29;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||AC007389.3|lincRNA|NON_CODING|ENST00000420724|2|1),INTRON(MODIFIER|||||AC074391.1|processed_transcript|NON_CODING|ENST00000377977|4|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	66:4:0:0:0,2:60,91:2,2:0,0	116:15:0:0:7,12:94,141:0,6:0,1
2	67883472	.	C	T	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||AC010987.5|lincRNA|NON_CODING|ENST00000419809|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:1:0:0:0,0:37,39:0,1:0,0	102:0:0:0:0,0:94,99:0,0:8,9
2	69338230	.	A	C	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||333|ANTXR1|protein_coding|CODING|ENST00000409829|10|1),INTRON(MODIFIER||||368|ANTXR1|protein_coding|CODING|ENST00000409349|10|1),INTRON(MODIFIER||||564|ANTXR1|protein_coding|CODING|ENST00000303714|10|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	50:0:0:0:49,49:1,1:0,0:0,0	143:1:0:0:123,132:19,28:0,0:0,0
2	70324289	.	C	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||AC016700.2|lincRNA|NON_CODING|ENST00000455541||1),INTRON(MODIFIER|||||AC016700.3|lincRNA|NON_CODING|ENST00000442326|2|1),UPSTREAM(MODIFIER|||||AC016700.3|lincRNA|NON_CODING|ENST00000457870||1),UPSTREAM(MODIFIER|||||AC016700.3|retained_intron|NON_CODING|ENST00000424748||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:2:0:0:0,0:30,32:0,0:0,0	105:9:0:0:0,0:89,99:7,8:0,0
2	70376000	.	G	A	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||574|C2orf42|protein_coding|CODING|ENST00000264434||1),DOWNSTREAM(MODIFIER||||574|C2orf42|protein_coding|CODING|ENST00000420306||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	44:0:0:0:0,0:0,0:44,45:0,0	107:2:0:0:10,10:0,0:95,98:0,0
2	71388323	.	A	G	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	48:3:0:0:44,57:1,2:0,1:0,0	108:9:0:0:87,111:1,4:11,17:0,2
2	71575204	.	G	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1024|ZNF638|protein_coding|CODING|ENST00000544512|1|1),INTRON(MODIFIER||||1139|ZNF638|protein_coding|CODING|ENST00000355812|1|1),INTRON(MODIFIER||||196|ZNF638|protein_coding|CODING|ENST00000437658|1|1),INTRON(MODIFIER||||1978|ZNF638|protein_coding|CODING|ENST00000264447|1|1),INTRON(MODIFIER||||1978|ZNF638|protein_coding|CODING|ENST00000409544|1|1),INTRON(MODIFIER||||28|ZNF638|protein_coding|CODING|ENST00000417778|3|1),INTRON(MODIFIER||||35|ZNF638|protein_coding|CODING|ENST00000454122|1|1),INTRON(MODIFIER||||61|ZNF638|protein_coding|CODING|ENST00000454278|2|1),INTRON(MODIFIER||||61|ZNF638|protein_coding|CODING|ENST00000455226|2|1),INTRON(MODIFIER||||814|ZNF638|protein_coding|CODING|ENST00000377802|1|1),INTRON(MODIFIER||||918|ZNF638|protein_coding|CODING|ENST00000410075|1|1),INTRON(MODIFIER|||||ZNF638|processed_transcript|CODING|ENST00000464375|1|1),INTRON(MODIFIER|||||ZNF638|processed_transcript|CODING|ENST00000466330|1|1),INTRON(MODIFIER|||||ZNF638|processed_transcript|CODING|ENST00000466975|1|1),INTRON(MODIFIER|||||ZNF638|processed_transcript|CODING|ENST00000475743|1|1),INTRON(MODIFIER|||||ZNF638|processed_transcript|CODING|ENST00000487707|2|1),INTRON(MODIFIER|||||ZNF638|processed_transcript|CODING|ENST00000494621|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:0:0:0:0,0:0,0:31,31:0,0	106:0:0:0:4,4:0,0:102,102:0,0
2	71999616	.	G	A	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:0:0:0:0,0:0,0:38,38:0,0	112:3:0:0:9,10:0,0:100,103:0,0
2	72380100	.	C	T	.	PASS	NT=ref;QSS=24;QSS_NT=24;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER||||512|CYP26B1|protein_coding|CODING|ENST00000001146||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	48:1:0:0:0,0:47,47:0,0:0,0	99:2:0:0:0,0:91,93:1,1:5,6
2	72778683	.	G	C	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||681|EXOC6B|protein_coding|CODING|ENST00000410104|8|1),INTRON(MODIFIER||||811|EXOC6B|protein_coding|CODING|ENST00000272427|8|1),INTRON(MODIFIER|||||EXOC6B|nonsense_mediated_decay|CODING|ENST00000410112|7|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:2:0:0:0,0:0,0:35,40:0,0	85:5:0:0:0,0:8,11:72,79:0,0
2	74388795	.	A	T	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||148|MOB1A|protein_coding|CODING|ENST00000409969||1),DOWNSTREAM(MODIFIER|||||MOB1A|retained_intron|CODING|ENST00000463975||1),INTRON(MODIFIER||||216|MOB1A|protein_coding|CODING|ENST00000396049|4|1),INTRON(MODIFIER|||||MOB1A|processed_transcript|CODING|ENST00000495286|4|1),INTRON(MODIFIER|||||MOB1A|processed_transcript|CODING|ENST00000497054|4|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:2:0:0:37,38:0,1:0,1:0,0	97:2:0:0:88,91:0,0:0,0:7,7
2	74701024	.	T	C	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||743|CCDC142|protein_coding|CODING|ENST00000290418||1),DOWNSTREAM(MODIFIER|||||CCDC142|retained_intron|CODING|ENST00000473278||1),DOWNSTREAM(MODIFIER|||||CCDC142|retained_intron|CODING|ENST00000486335||1),DOWNSTREAM(MODIFIER|||||CCDC142|retained_intron|CODING|ENST00000497232||1),UPSTREAM(MODIFIER||||112|MRPL53|protein_coding|CODING|ENST00000258105||1),UPSTREAM(MODIFIER||||70|MRPL53|protein_coding|CODING|ENST00000409710||1),UPSTREAM(MODIFIER|||||MRPL53|retained_intron|CODING|ENST00000467349||1),UPSTREAM(MODIFIER|||||MRPL53|retained_intron|CODING|ENST00000468875||1),UTR_3_PRIME(MODIFIER||||750|CCDC142|protein_coding|CODING|ENST00000393965|9|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:0:0:0:0,0:0,0:0,0:35,38	87:0:0:0:0,0:6,6:0,0:81,87
2	75441903	.	T	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:0:0:0:0,0:0,0:0,0:29,34	73:1:0:0:7,10:0,0:0,0:65,76
2	75441923	rs140102526	G	C	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=75441923;GMAF=0.1781;dbSNPBuildID=134;SSR=0;SAO=0;VP=050000000005000014000100;WGT=1;VC=SNV;ASP;KGPhase1;KGPROD	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:1:0:0:0,0:0,0:33,39:0,0	86:0:0:0:0,0:9,12:77,87:0,0
2	75890827	.	A	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||199|GCFC2|protein_coding|CODING|ENST00000427862||1),DOWNSTREAM(MODIFIER||||743|GCFC2|protein_coding|CODING|ENST00000409857||1),DOWNSTREAM(MODIFIER|||||GCFC2|processed_transcript|CODING|ENST00000472230||1),DOWNSTREAM(MODIFIER|||||GCFC2|processed_transcript|CODING|ENST00000492826||1),EXON(MODIFIER|||||GCFC2|processed_transcript|CODING|ENST00000470197|13|1),INTRON(MODIFIER||||292|MRPL19|protein_coding|CODING|ENST00000409374|6|1),INTRON(MODIFIER||||79|MRPL19|protein_coding|CODING|ENST00000453233|2|1),INTRON(MODIFIER|||||GCFC2|processed_transcript|CODING|ENST00000470285|2|1),INTRON(MODIFIER|||||MRPL19|nonsense_mediated_decay|CODING|ENST00000358788|4|1),INTRON(MODIFIER|||||MRPL19|processed_transcript|CODING|ENST00000492255|1|1),UTR_3_PRIME(MODIFIER||||254|GCFC2|protein_coding|CODING|ENST00000541687|16|1),UTR_3_PRIME(MODIFIER||||781|GCFC2|protein_coding|CODING|ENST00000321027|17|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:0:0:0:32,32:0,0:0,0:0,0	101:0:0:0:94,94:0,0:0,0:7,7
2	76882294	.	T	C	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	49:2:0:0:0,0:0,0:0,0:47,49	87:0:0:0:0,0:4,4:0,0:83,83
2	76892126	.	A	T	.	PASS	NT=ref;QSS=25;QSS_NT=25;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	50:0:0:0:50,51:0,0:0,0:0,0	101:0:0:0:93,93:0,0:0,0:8,8
2	77407999	.	G	C	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||590|LRRTM4|protein_coding|CODING|ENST00000409093|3|1),INTRON(MODIFIER||||590|LRRTM4|protein_coding|CODING|ENST00000409884|3|1),INTRON(MODIFIER||||591|LRRTM4|protein_coding|CODING|ENST00000409911|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:0:0:0:0,0:0,0:40,40:0,0	97:0:0:0:0,0:6,6:91,91:0,0
2	78624179	.	G	A	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:0:0:0:0,0:0,0:39,40:0,0	95:3:0:0:7,8:0,0:85,87:0,0
2	79507789	rs201723779	A	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||905|CTNNA2|protein_coding|CODING|ENST00000466387|2|1),UPSTREAM(MODIFIER|||||CTNNA2|processed_transcript|CODING|ENST00000496251||1);RSPOS=79507789;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	44:0:0:0:43,43:0,0:1,1:0,0	92:0:0:0:77,77:2,2:13,13:0,0
2	81080849	.	T	C	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||AC084193.1|lincRNA|NON_CODING|ENST00000450290|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	47:0:0:0:0,0:0,0:0,0:47,47	89:3:0:0:0,0:5,5:0,0:81,84
2	81159406	.	G	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:0:0:0:0,1:0,0:34,36:0,0	105:3:0:0:6,11:0,1:96,103:0,0
2	83226760	.	C	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	27:0:0:0:0,0:27,27:0,0:0,0	116:1:0:0:0,0:106,107:0,0:9,9
2	83303058	rs76235110	C	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=83303058;GMAF=0.0316;dbSNPBuildID=132;SSR=0;SAO=0;VP=050100000001070116000100;WGT=1;VC=SNV;SLO;VLD;G5A;G5;GNO;KGPhase1;KGPROD;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:1:0:0:0,0:32,33:0,0:0,0	95:1:0:0:0,0:88,89:0,0:6,6
2	83625156	.	G	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:1:0:0:0,0:0,0:32,33:0,0	102:1:0:0:6,7:0,0:95,95:0,0
2	84207532	rs201335029	A	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=84207532;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	46:0:0:0:45,45:1,1:0,0:0,1	106:0:0:0:100,100:1,1:0,0:5,11
2	84598073	rs201540213	A	G	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=AA->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=84598073;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	41:0:0:0:41,47:0,0:0,2:0,0	108:0:0:0:102,109:1,1:5,9:0,0
2	86772696	rs6715885	C	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||156|CHMP3|protein_coding|CODING|ENST00000409225|1|1),INTRON(MODIFIER||||182|CHMP3|protein_coding|CODING|ENST00000409727|1|1),INTRON(MODIFIER||||220|RNF103-CHMP3|protein_coding|CODING|ENST00000440757|2|1),INTRON(MODIFIER||||222|CHMP3|protein_coding|CODING|ENST00000263856|1|1),INTRON(MODIFIER||||251|CHMP3|protein_coding|CODING|ENST00000439940|3|1),INTRON(MODIFIER|||||CHMP3|processed_transcript|CODING|ENST00000393773|1|1),INTRON(MODIFIER|||||CHMP3|processed_transcript|CODING|ENST00000485465|1|1),INTRON(MODIFIER|||||CHMP3|processed_transcript|CODING|ENST00000486404|1|1),UPSTREAM(MODIFIER|||||CHMP3|processed_transcript|CODING|ENST00000409810||1),UPSTREAM(MODIFIER|||||CHMP3|processed_transcript|CODING|ENST00000466032||1);RSPOS=86772696;dbSNPBuildID=116;SSR=0;SAO=0;VP=050000080001040002000100;GENEINFO=CHMP3:51652|RNF103-CHMP3:100526767;WGT=1;VC=SNV;INT;VLD;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:3:0:0:0,0:27,30:0,0:0,0	51:7:0:0:0,0:38,48:1,1:5,5
2	87591477	.	C	A	.	PASS	NT=ref;QSS=26;QSS_NT=26;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||AC068279.1|pseudogene|NON_CODING|ENST00000393756||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	68:0:0:0:1,1:67,68:0,0:0,0	244:10:1:0:25,32:209,219:0,1:0,0
2	87655390	rs189384671	G	A	.	PASS	NT=ref;QSS=43;QSS_NT=43;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=87655390;dbSNPBuildID=135;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	105:14:0:0:0,1:0,4:90,140:1,4	238:36:0:0:10,18:1,6:191,290:0,2
2	88683539	.	G	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||U6|snRNA|NON_CODING|ENST00000390831||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:0:0:0:0,0:0,0:31,31:0,0	88:3:0:0:0,0:0,0:80,83:5,5
2	88949318	.	C	T	.	PASS	NT=ref;QSS=23;QSS_NT=23;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	46:0:0:0:0,0:46,47:0,0:0,0	107:1:0:0:0,0:100,101:0,0:6,6
2	89073963	.	A	G	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||ANKRD36BP2|processed_transcript|NON_CODING|ENST00000443770||1),INTRON(MODIFIER|||||ANKRD36BP2|processed_transcript|NON_CODING|ENST00000393515|2|1),INTRON(MODIFIER|||||ANKRD36BP2|processed_transcript|NON_CODING|ENST00000393525|2|1),INTRON(MODIFIER|||||ANKRD36BP2|processed_transcript|NON_CODING|ENST00000421951|2|1),INTRON(MODIFIER|||||ANKRD36BP2|processed_transcript|NON_CODING|ENST00000427055|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	54:0:0:0:54,59:0,0:0,1:0,0	172:1:0:0:165,180:0,0:6,9:0,0
2	89093308	.	A	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||ANKRD36BP2|processed_transcript|NON_CODING|ENST00000393515|12|1),INTRON(MODIFIER|||||ANKRD36BP2|processed_transcript|NON_CODING|ENST00000393525|12|1),INTRON(MODIFIER|||||ANKRD36BP2|transcribed_unprocessed_pseudogene|NON_CODING|ENST00000575193|9|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:0:0:0:40,46:0,0:0,0:0,0	117:0:0:0:112,117:0,0:5,7:0,0
2	89857367	.	T	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:5:20:0:0,0:0,4:0,0:35,102	95:7:71:0:0,0:5,16:0,0:83,247
2	90372625	.	A	T	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=AA->AT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	65:3:0:0:60,103:0,0:2,2:0,2	188:8:0:0:169,266:0,1:3,4:8,12
2	90412784	.	C	T	.	PASS	NT=ref;QSS=30;QSS_NT=30;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	61:0:0:0:0,0:61,85:0,0:0,0	235:4:0:0:1,1:219,284:0,1:11,14
2	90413541	.	G	T	.	PASS	NT=ref;QSS=25;QSS_NT=25;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	71:5:0:0:0,0:0,0:66,88:0,1	150:13:0:0:0,0:1,4:128,181:8,12
2	90430095	.	A	G	.	PASS	NT=ref;QSS=31;QSS_NT=31;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	114:3:0:0:110,139:0,0:1,1:0,0	324:9:0:0:305,349:0,0:10,11:0,0
2	90434954	.	T	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	93:1:0:0:0,0:1,4:0,0:91,113	252:0:0:0:0,0:10,18:0,0:242,291
2	90439170	.	G	C	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	41:0:0:0:0,0:0,1:41,48:0,0	143:0:0:0:0,0:6,9:137,151:0,0
2	90471311	.	A	G	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	91:0:0:0:90,94:0,0:1,1:0,0	215:4:0:0:197,226:0,0:14,16:0,0
2	90473949	.	A	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=AA->AC;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	48:1:0:0:47,52:0,1:0,0:0,0	125:4:0:0:114,134:7,10:0,1:0,0
2	91651988	rs190252724	A	G	.	PASS	NT=ref;QSS=23;QSS_NT=23;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=91651988;dbSNPBuildID=135;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	103:4:0:0:99,136:0,0:0,2:0,0	281:33:0:0:240,363:0,1:8,20:0,0
2	91651993	rs111781722	T	C	.	PASS	NT=ref;QSS=31;QSS_NT=31;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=91651993;dbSNPBuildID=132;SSR=0;SAO=0;VP=050100000001000102000100;WGT=1;VC=SNV;SLO;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	102:4:0:0:0,0:0,2:0,0:98,139	291:35:0:0:0,0:9,21:0,0:247,377
2	91661584	.	T	A	.	PASS	NT=ref;QSS=24;QSS_NT=24;SGT=TT->AT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	87:1:0:0:1,2:0,0:0,0:85,108	293:3:0:0:17,22:0,0:0,0:273,322
2	91675361	.	C	T	.	PASS	NT=ref;QSS=41;QSS_NT=41;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||IGKV1OR2-118|unprocessed_pseudogene|NON_CODING|ENST00000405516||1),UPSTREAM(MODIFIER|||||IGKV1OR2-118|unprocessed_pseudogene|NON_CODING|ENST00000455863||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	84:0:0:0:0,0:84,96:0,0:0,0	261:2:0:0:1,1:232,260:0,0:26,26
2	91705081	.	A	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AC;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	97:7:0:0:88,139:2,5:0,1:0,0	254:11:0:0:225,337:16,19:2,2:0,1
2	91706876	.	T	C	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:3:0:0:0,0:0,0:0,2:35,46	69:5:0:0:0,0:7,13:1,1:56,84
2	91740296	rs11489055	C	T	.	PASS	NT=ref;QSS=30;QSS_NT=30;SGT=CC->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||AC018696.7|pseudogene|NON_CODING|ENST00000437744||1);RSPOS=91740296;dbSNPBuildID=120;SSR=0;SAO=0;VP=050000000001000002000100;WGT=1;VC=SNV;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	62:0:0:0:0,0:62,75:0,0:0,1	170:1:0:0:0,0:151,184:0,0:18,28
2	91903531	rs202208519	A	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||AC027612.3|processed_transcript|NON_CODING|ENST00000436174||1),UPSTREAM(MODIFIER|||||AC027612.3|transcribed_unprocessed_pseudogene|NON_CODING|ENST00000445955||1);RSPOS=91903531;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:0:0:0:32,35:1,1:0,0:0,0	107:0:0:0:94,98:0,0:0,0:13,17
2	91973871	.	T	G	.	PASS	NT=ref;QSS=33;QSS_NT=33;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||GGT8P|unprocessed_pseudogene|NON_CODING|ENST00000418938||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	87:5:0:0:0,0:0,0:0,1:82,98	252:18:0:0:0,0:0,1:12,23:222,265
2	91987401	.	G	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	64:4:0:0:1,3:0,3:59,85:0,0	206:13:0:0:12,29:0,17:181,249:0,0
2	91987458	.	T	A	.	PASS	NT=ref;QSS=27;QSS_NT=27;SGT=TT->AT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	65:3:0:0:0,2:0,0:0,0:62,93	228:10:0:0:16,32:0,0:0,0:202,306
2	92042856	.	A	C	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||AC127391.3|processed_pseudogene|NON_CODING|ENST00000411737||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	43:0:0:0:43,43:0,0:0,0:0,0	103:1:1:0:95,97:7,9:0,0:0,0
2	92078085	.	C	T	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||SLC9B1P2|unprocessed_pseudogene|NON_CODING|ENST00000398120|5|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:0:0:0:0,0:39,45:0,0:0,0	167:1:0:0:1,1:158,180:0,0:7,13
2	92084225	rs200191093	C	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->AC;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER|||||SLC9B1P2|unprocessed_pseudogene|NON_CODING|ENST00000398120|3|1);RSPOS=92084225;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	47:1:0:0:0,2:46,57:0,0:0,0	101:1:0:0:11,23:89,110:0,0:0,0
2	92155673	.	A	C	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||CHEK2P3|unprocessed_pseudogene|NON_CODING|ENST00000416118||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:0:0:0:38,38:0,0:0,0:0,0	93:0:0:0:88,88:5,7:0,0:0,0
2	92243495	.	G	T	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=GG->GT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	77:2:4:0:0,2:0,0:75,97:0,2	197:5:16:0:2,2:0,0:174,219:16,18
2	92251206	rs75752911	C	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=92251206;dbSNPBuildID=131;SSR=0;SAO=0;VP=050000000005000102000100;WGT=1;VC=SNV;ASP;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:0:0:0:0,0:36,36:0,0:0,1	121:0:0:0:0,0:112,112:0,0:9,13
2	92254160	.	G	T	.	PASS	NT=ref;QSS=27;QSS_NT=27;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	56:1:0:0:0,0:0,0:55,72:0,1	198:7:0:0:0,0:0,0:169,206:22,24
2	92254167	.	G	T	.	PASS	NT=ref;QSS=27;QSS_NT=27;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	58:2:0:0:2,3:1,1:53,66:0,1	200:4:0:0:4,6:4,8:168,192:20,22
2	92259250	.	G	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	66:0:0:0:0,0:0,0:66,76:0,1	148:5:0:0:0,0:0,0:131,168:12,20
2	92259424	.	T	C	.	PASS	NT=ref;QSS=24;QSS_NT=24;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	60:10:0:0:0,0:0,2:1,1:49,80	274:51:0:0:0,0:9,20:0,0:214,304
2	92264464	.	C	G	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=CC->CG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	76:2:0:0:0,0:74,99:0,2:0,1	214:3:0:0:0,0:196,265:15,18:0,1
2	92273022	.	G	A	.	PASS	NT=ref;QSS=26;QSS_NT=26;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	61:9:0:0:0,2:0,1:52,127:0,0	138:14:0:0:10,17:0,2:114,307:0,0
2	92275672	rs62147395	A	C	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=92275672;dbSNPBuildID=129;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	42:1:0:0:41,44:0,0:0,0:0,0	108:1:0:0:102,105:5,6:0,0:0,0
2	92282869	.	T	G	.	PASS	NT=ref;QSS=24;QSS_NT=24;SGT=TT->GT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	73:1:0:0:0,0:0,0:0,5:72,111	177:16:0:0:0,0:0,0:8,18:153,251
2	92282885	.	A	C	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=AA->AC;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	72:2:0:0:70,107:0,6:0,0:0,0	165:14:1:0:143,235:7,17:0,0:1,1
2	92285817	.	T	A	.	PASS	NT=ref;QSS=25;QSS_NT=25;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	88:1:1:0:1,1:0,0:0,0:86,119	222:3:0:0:9,20:0,1:0,0:210,282
2	92302307	.	G	C	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	55:1:0:0:0,0:1,1:52,61:1,1	126:12:0:0:0,0:9,13:101,135:4,5
2	95402186	.	A	G	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||AC073464.4|processed_pseudogene|NON_CODING|ENST00000424978||1),UPSTREAM(MODIFIER|||||CNN2P8|processed_pseudogene|NON_CODING|ENST00000421872||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:0:0:0:36,36:0,0:0,1:0,0	104:1:0:0:94,95:0,1:9,17:0,0
2	95402187	.	C	G	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||AC073464.4|processed_pseudogene|NON_CODING|ENST00000424978||1),UPSTREAM(MODIFIER|||||CNN2P8|processed_pseudogene|NON_CODING|ENST00000421872||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:0:0:0:0,0:36,36:0,1:0,0	103:1:0:0:0,0:93,95:9,17:0,0
2	95424063	rs76205936	C	G	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=CC->CG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=DOWNSTREAM(MODIFIER|||||AC073464.7|processed_pseudogene|NON_CODING|ENST00000412994||1),DOWNSTREAM(MODIFIER|||||CYP4F32P|unprocessed_pseudogene|NON_CODING|ENST00000426492||1),INTERGENIC(MODIFIER||||||||||1);RSPOS=95424063;dbSNPBuildID=131;SSR=0;SAO=0;VP=05010008000500010e000100;GENEINFO=LOC90499:90499;WGT=1;VC=SNV;SLO;INT;ASP;GNO;KGPilot123;KGPROD;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	46:0:0:0:0,0:46,47:0,1:0,0	123:1:0:0:0,0:115,115:7,12:0,0
2	95424083	rs80164439	T	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||AC073464.7|processed_pseudogene|NON_CODING|ENST00000412994||1),DOWNSTREAM(MODIFIER|||||CYP4F32P|unprocessed_pseudogene|NON_CODING|ENST00000426492||1),INTERGENIC(MODIFIER||||||||||1);RSPOS=95424083;dbSNPBuildID=131;SSR=0;SAO=0;VP=05000008000500000e000100;GENEINFO=LOC90499:90499;WGT=1;VC=SNV;INT;ASP;KGPilot123;KGPROD;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	48:1:0:0:0,1:0,0:0,0:47,49	133:2:0:0:6,11:0,0:0,1:125,125
2	95424104	.	T	C	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=TT->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=DOWNSTREAM(MODIFIER|||||AC073464.7|processed_pseudogene|NON_CODING|ENST00000412994||1),DOWNSTREAM(MODIFIER|||||CYP4F32P|unprocessed_pseudogene|NON_CODING|ENST00000426492||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	48:1:0:0:0,0:0,1:1,1:46,47	125:0:0:0:0,0:7,11:1,1:117,117
2	95424133	.	T	C	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=TT->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=DOWNSTREAM(MODIFIER|||||AC073464.7|processed_pseudogene|NON_CODING|ENST00000412994||1),DOWNSTREAM(MODIFIER|||||CYP4F32P|unprocessed_pseudogene|NON_CODING|ENST00000426492||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	41:1:0:0:0,0:0,1:0,0:40,41	130:0:0:0:0,0:7,12:1,1:122,123
2	95424141	.	A	G	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=AA->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=DOWNSTREAM(MODIFIER|||||AC073464.7|processed_pseudogene|NON_CODING|ENST00000412994||1),DOWNSTREAM(MODIFIER|||||CYP4F32P|unprocessed_pseudogene|NON_CODING|ENST00000426492||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:1:0:0:39,40:0,0:0,1:0,0	133:1:0:0:125,127:0,0:7,12:0,0
2	95424165	.	G	A	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=GG->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=DOWNSTREAM(MODIFIER|||||AC073464.7|processed_pseudogene|NON_CODING|ENST00000412994||1),DOWNSTREAM(MODIFIER|||||CYP4F32P|unprocessed_pseudogene|NON_CODING|ENST00000426492||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	44:1:0:0:0,1:0,0:43,44:0,0	130:2:0:0:7,10:0,0:121,124:0,0
2	95474048	.	C	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->AC;SOMATIC;TQSS=2;TQSS_NT=2;EFF=DOWNSTREAM(MODIFIER|||||ANKRD20A8P|retained_intron|NON_CODING|ENST00000590226||1),INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||AC073464.11|unprocessed_pseudogene|NON_CODING|ENST00000429823||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:0:0:0:0,2:33,33:0,0:0,0	99:3:0:0:7,21:89,91:0,0:0,0
2	95488671	.	G	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||ANKRD20A8P|processed_transcript|NON_CODING|ENST00000432432|12|1),INTRON(MODIFIER|||||ANKRD20A8P|transcribed_unprocessed_pseudogene|NON_CODING|ENST00000446135|12|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:1:0:0:0,0:0,0:35,37:0,0	114:1:0:0:12,12:0,0:100,100:1,1
2	95507088	rs200578953	G	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||ANKRD20A8P|processed_transcript|NON_CODING|ENST00000432432|6|1),INTRON(MODIFIER|||||ANKRD20A8P|transcribed_unprocessed_pseudogene|NON_CODING|ENST00000446135|6|1);RSPOS=95507088;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000080005000002000100;WGT=1;VC=SNV;INT;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:0:0:0:0,0:0,0:37,38:0,0	124:3:0:0:6,7:0,0:115,119:0,0
2	96607216	.	A	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER||||1778|ANKRD36C|protein_coding|CODING|ENST00000456556|19|1),INTRON(MODIFIER|||||ANKRD36C|nonsense_mediated_decay|CODING|ENST00000528268|19|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	54:0:0:0:54,65:0,0:0,0:0,0	164:5:0:0:151,191:1,1:7,8:0,0
2	96619571	rs143643625	A	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=AA->AC;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER||||1778|ANKRD36C|protein_coding|CODING|ENST00000456556|14|1),INTRON(MODIFIER|||||ANKRD36C|nonsense_mediated_decay|CODING|ENST00000528268|14|1);RSPOS=96619571;dbSNPBuildID=134;SSR=0;SAO=0;VP=050000080005000002000100;GENEINFO=ANKRD36C:400986;WGT=1;VC=SNV;INT;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	50:2:0:0:48,52:0,1:0,0:0,0	166:1:0:0:156,167:8,12:1,1:0,0
2	97206586	.	A	G	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||526|ARID5A|protein_coding|CODING|ENST00000454558|1|1),INTRON(MODIFIER||||594|ARID5A|protein_coding|CODING|ENST00000357485|1|1),INTRON(MODIFIER|||||ARID5A|nonsense_mediated_decay|CODING|ENST00000412735|1|1),INTRON(MODIFIER|||||ARID5A|retained_intron|CODING|ENST00000467498|1|1),INTRON(MODIFIER|||||ARID5A|retained_intron|CODING|ENST00000470579|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	42:0:0:0:42,42:0,0:0,0:0,0	104:1:0:0:95,96:0,0:8,9:0,0
2	97409757	.	T	C	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER||||203|LMAN2L|protein_coding|CODING|ENST00000534882||1),UPSTREAM(MODIFIER||||210|LMAN2L|protein_coding|CODING|ENST00000537039||1),UPSTREAM(MODIFIER||||214|LMAN2L|protein_coding|CODING|ENST00000426463||1),UPSTREAM(MODIFIER||||348|LMAN2L|protein_coding|CODING|ENST00000264963||1),UPSTREAM(MODIFIER||||359|LMAN2L|protein_coding|CODING|ENST00000377079||1),UPSTREAM(MODIFIER|||||LMAN2L|nonsense_mediated_decay|CODING|ENST00000434524||1),UPSTREAM(MODIFIER|||||LMAN2L|nonsense_mediated_decay|CODING|ENST00000434865||1),UPSTREAM(MODIFIER|||||LMAN2L|nonsense_mediated_decay|CODING|ENST00000440610||1),UPSTREAM(MODIFIER|||||LMAN2L|nonsense_mediated_decay|CODING|ENST00000446780||1),UPSTREAM(MODIFIER|||||LMAN2L|nonsense_mediated_decay|CODING|ENST00000449221||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:1:0:0:0,0:0,0:1,2:38,39	90:0:0:0:0,0:6,7:1,1:83,83
2	103677551	.	C	G	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:0:0:0:0,0:39,39:0,3:0,0	123:5:0:0:1,1:109,110:8,33:0,0
2	103677560	.	G	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:0:0:0:0,0:0,0:39,39:0,3	122:5:0:0:0,0:0,0:112,113:5,30
2	103677660	.	A	G	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:1:0:0:38,39:0,0:0,3:0,0	125:0:0:0:109,109:0,0:16,46:0,0
2	103677688	.	T	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	44:1:0:0:0,0:0,2:0,0:43,44	125:0:0:0:0,0:11,28:0,0:114,114
2	105090667	.	C	T	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||AC013402.2|processed_transcript|NON_CODING|ENST00000414442|2|1),INTRON(MODIFIER|||||AC013402.2|processed_transcript|NON_CODING|ENST00000447380|1|1),INTRON(MODIFIER|||||AC013402.2|retained_intron|NON_CODING|ENST00000429464|1|1),INTRON(MODIFIER|||||AC013402.2|retained_intron|NON_CODING|ENST00000451400|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:0:0:0:0,0:38,38:0,0:0,0	93:1:0:0:0,0:84,84:0,0:8,9
2	105440926	rs201255667	A	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||AC018730.1|antisense|NON_CODING|ENST00000413121|1|1),INTRON(MODIFIER|||||AC018730.1|antisense|NON_CODING|ENST00000443988|1|1),INTRON(MODIFIER|||||AC018730.1|antisense|NON_CODING|ENST00000447876|1|1),INTRON(MODIFIER|||||AC018730.1|antisense|NON_CODING|ENST00000454729|1|1),INTRON(MODIFIER|||||AC018730.1|antisense|NON_CODING|ENST00000458253|1|1);RSPOS=105440926;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000080005000002000100;WGT=1;VC=SNV;INT;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:3:0:0:32,49:0,1:1,3:0,0	77:10:1:0:55,107:0,0:12,32:0,2
2	105660233	.	C	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||396|MRPS9|protein_coding|CODING|ENST00000258455|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:0:0:0:0,0:34,34:0,0:0,0	96:3:0:0:0,0:87,88:0,0:6,8
2	109880825	.	C	T	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||715|SH3RF3|protein_coding|CODING|ENST00000418513|1|1),INTRON(MODIFIER||||882|SH3RF3|protein_coding|CODING|ENST00000309415|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	46:5:0:0:0,0:41,47:0,0:0,0	130:7:0:0:0,0:115,124:0,1:8,9
2	110256515	.	G	A	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||882|SH3RF3|protein_coding|CODING|ENST00000309415|9|1),UPSTREAM(MODIFIER||||55|SH3RF3|protein_coding|CODING|ENST00000444352||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:0:0:0:0,0:0,0:40,40:0,0	105:3:0:0:6,7:0,0:96,98:0,0
2	113789037	.	T	A	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||157|IL36B|protein_coding|CODING|ENST00000327407|2|1),INTRON(MODIFIER||||164|IL36B|protein_coding|CODING|ENST00000259213|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:0:0:0:0,0:0,0:0,0:35,35	114:2:0:0:5,5:0,0:0,1:107,109
2	114347740	rs3982688	G	A	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||WASH2P|unprocessed_pseudogene|NON_CODING|ENST00000326632|2|1),INTRON(MODIFIER|||||WASH2P|unprocessed_pseudogene|NON_CODING|ENST00000453662|1|1),INTRON(MODIFIER|||||WASH2P|unprocessed_pseudogene|NON_CODING|ENST00000538033|1|1),INTRON(MODIFIER|||||WASH2P|unprocessed_pseudogene|NON_CODING|ENST00000542901|2|1);RSPOS=114347740;dbSNPBuildID=108;SSR=0;SAO=0;VP=050100080005000002000100;GENEINFO=WASH2P:375260;WGT=1;VC=SNV;SLO;INT;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	46:1:0:0:0,0:0,0:45,47:0,0	108:0:0:0:8,8:0,0:100,104:0,0
2	114373633	rs200328980	C	T	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||AL078621.11|processed_transcript|NON_CODING|ENST00000391616|2|1),INTRON(MODIFIER|||||AL078621.11|processed_transcript|NON_CODING|ENST00000416673|2|1),UPSTREAM(MODIFIER|||||AL078621.11|transcribed_processed_pseudogene|NON_CODING|ENST00000449021||1);RSPOS=114373633;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000080005000002000100;WGT=1;VC=SNV;INT;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:1:0:0:0,0:37,43:0,1:0,0	129:1:0:0:0,0:114,123:0,0:14,15
2	117595237	rs200560958	T	C	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=117595237;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:0:6:0:0,0:0,0:0,0:30,30	84:3:41:0:0,0:11,14:0,0:70,72
2	117801828	rs201844314	G	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=117801828;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:0:0:0:0,0:0,0:30,30:0,0	137:5:0:0:13,14:1,1:116,119:2,4
2	118595332	.	T	C	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=EXON(MODIFIER|||||AC009404.2|lincRNA|NON_CODING|ENST00000439955|3|1),EXON(MODIFIER|||||AC009404.2|lincRNA|NON_CODING|ENST00000445332|1|1),INTRON(MODIFIER|||||AC009404.2|lincRNA|NON_CODING|ENST00000420330|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:0:0:0:0,0:0,0:0,0:38,38	112:4:0:0:0,0:6,6:0,0:102,106
2	118734657	.	G	A	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||630|CCDC93|protein_coding|CODING|ENST00000319432|8|1),INTRON(MODIFIER||||631|CCDC93|protein_coding|CODING|ENST00000376300|8|1),INTRON(MODIFIER|||||CCDC93|processed_transcript|CODING|ENST00000460781|4|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	42:3:0:0:0,0:0,0:39,42:0,0	94:3:0:0:6,6:0,0:84,87:1,1
2	119887325	.	G	A	.	PASS	NT=ref;QSS=23;QSS_NT=23;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	46:1:0:0:0,0:0,0:45,46:0,0	102:0:0:0:5,5:0,0:97,97:0,0
2	121111302	.	C	T	.	PASS	NT=ref;QSS=24;QSS_NT=24;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||407|INHBB|protein_coding|CODING|ENST00000295228||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	48:0:0:0:0,0:48,49:0,0:0,0	104:3:0:0:0,0:92,95:0,0:9,9
2	121317483	.	T	C	.	PASS	NT=ref;QSS=24;QSS_NT=24;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||AC073257.1|lincRNA|NON_CODING|ENST00000432474||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	49:1:0:0:0,0:0,0:0,0:48,49	126:0:0:0:0,0:8,8:0,0:118,119
2	121317747	.	A	C	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||AC073257.1|lincRNA|NON_CODING|ENST00000432474||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:0:0:0:38,38:0,0:0,0:0,0	97:0:0:0:88,88:8,8:1,1:0,0
2	122472731	.	G	T	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||AC018737.1|processed_transcript|NON_CODING|ENST00000419902|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:0:0:0:0,0:0,0:35,36:0,0	104:1:0:0:0,0:1,1:91,92:11,11
2	123027187	.	T	C	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:1:0:0:0,0:0,0:0,0:39,40	94:0:0:0:0,0:10,10:0,0:84,84
2	124680366	.	C	T	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:1:0:0:0,0:39,40:0,0:0,0	108:1:0:0:0,0:93,94:1,1:13,13
2	125350814	.	A	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1306|CNTNAP5|protein_coding|CODING|ENST00000431078|11|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:0:0:0:31,31:0,0:1,1:0,0	85:0:0:0:76,83:0,0:0,0:9,10
2	125417804	.	G	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1306|CNTNAP5|protein_coding|CODING|ENST00000431078|13|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:0:0:0:0,0:0,0:31,31:0,0	107:1:0:0:9,9:0,0:97,97:0,1
2	125773523	.	C	G	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:0:0:0:0,0:32,32:0,0:0,0	111:0:0:0:0,0:101,101:10,10:0,0
2	125798128	.	G	T	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:0:0:0:0,0:0,0:37,37:0,0	95:1:0:0:0,0:0,0:89,89:5,5
2	126420443	.	G	A	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:0:0:0:0,0:0,0:35,35:0,0	118:1:0:0:6,7:0,0:111,111:0,0
2	126496384	.	A	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||AC097499.1|lincRNA|NON_CODING|ENST00000430692|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:0:0:0:32,32:0,0:0,0:0,0	112:1:0:0:104,105:0,0:0,0:7,7
2	128841161	.	A	G	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:0:0:0:36,36:0,0:0,0:0,0	133:1:0:0:123,124:1,1:8,8:0,0
2	129229628	.	G	T	.	PASS	NT=ref;QSS=25;QSS_NT=25;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	53:3:0:0:0,0:0,0:50,54:0,0	112:6:0:0:0,0:0,0:98,106:8,8
2	132029646	.	G	C	.	PASS	NT=ref;QSS=24;QSS_NT=24;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||309|PLEKHB2|protein_coding|CODING|ENST00000303908|5|1),INTRON(MODIFIER||||309|PLEKHB2|protein_coding|CODING|ENST00000404460|6|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	53:0:0:0:0,0:0,0:53,57:0,0	114:1:0:0:0,0:6,7:107,110:0,0
2	132041993	.	T	A	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=TT->AT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER||||309|PLEKHB2|protein_coding|CODING|ENST00000303908|5|1),INTRON(MODIFIER||||309|PLEKHB2|protein_coding|CODING|ENST00000404460|6|1),UPSTREAM(MODIFIER||||118|CYP4F31P|protein_coding|CODING|ENST00000416266||1),UPSTREAM(MODIFIER|||||AC131180.4|processed_transcript|NON_CODING|ENST00000560285||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	58:4:0:0:0,1:0,0:2,4:52,60	131:6:0:0:8,12:0,1:1,2:116,126
2	132129944	rs201963622	T	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||MTND6P10|unprocessed_pseudogene|NON_CODING|ENST00000437240||1),EXON(MODIFIER|||||MTND4P21|unprocessed_pseudogene|NON_CODING|ENST00000453886|1|1),UPSTREAM(MODIFIER|||||AC073869.13|unprocessed_pseudogene|NON_CODING|ENST00000424905||1),UPSTREAM(MODIFIER|||||MTND5P23|unprocessed_pseudogene|NON_CODING|ENST00000430812||1);RSPOS=132129944;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:1:0:0:0,0:0,0:0,0:35,35	117:3:0:0:0,0:5,7:0,0:109,112
2	132251999	rs200140796	G	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||AC093838.4|processed_pseudogene|NON_CODING|ENST00000416745|1|1),INTRON(MODIFIER|||||AC093838.4|processed_pseudogene|NON_CODING|ENST00000426369|1|1),INTRON(MODIFIER|||||AC093838.4|processed_pseudogene|NON_CODING|ENST00000538598|1|1),INTRON(MODIFIER|||||AC093838.4|processed_pseudogene|NON_CODING|ENST00000543513|1|1),INTRON(MODIFIER|||||AC093838.4|processed_transcript|NON_CODING|ENST00000438378|1|1),INTRON(MODIFIER|||||AC093838.4|transcribed_processed_pseudogene|NON_CODING|ENST00000415574|1|1),UPSTREAM(MODIFIER||||158|MZT2A|protein_coding|CODING|ENST00000309451||1),UPSTREAM(MODIFIER|||||MIR4784|miRNA|NON_CODING|ENST00000579560||1),UPSTREAM(MODIFIER|||||MZT2A|processed_transcript|CODING|ENST00000410036||1),UPSTREAM(MODIFIER|||||MZT2A|processed_transcript|CODING|ENST00000488586||1),UPSTREAM(MODIFIER|||||MZT2A|retained_intron|CODING|ENST00000445782||1),UPSTREAM(MODIFIER|||||MZT2A|retained_intron|CODING|ENST00000491265||1);RSPOS=132251999;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000080005000002000100;WGT=1;VC=SNV;INT;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:3:0:0:0,0:0,0:31,36:0,0	110:3:0:0:7,7:0,0:100,104:0,0
2	132518820	.	G	T	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||203|C2orf27A|protein_coding|CODING|ENST00000355171|3|1),INTRON(MODIFIER|||||C2orf27A|processed_transcript|CODING|ENST00000481510|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:0:0:0:0,0:0,0:40,40:0,0	122:3:0:0:0,0:0,0:111,112:8,15
2	132769129	.	T	A	.	PASS	NT=ref;QSS=51;QSS_NT=51;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	109:2:0:0:0,0:0,0:0,0:107,140	294:5:0:0:15,20:0,0:0,0:274,354
2	132770482	.	C	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->AC;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	59:0:0:0:0,0:59,83:0,0:0,0	140:0:0:0:6,7:134,174:0,0:0,1
2	132771386	.	G	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	56:1:0:0:0,1:0,0:55,62:0,0	148:5:0:0:6,8:0,0:137,165:0,0
2	132778498	.	T	A	.	PASS	NT=ref;QSS=36;QSS_NT=36;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	76:1:0:0:0,1:0,0:0,0:75,92	239:13:0:0:12,16:6,11:0,0:208,296
2	132778731	.	T	C	.	PASS	NT=ref;QSS=30;QSS_NT=30;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	62:2:0:0:0,0:0,0:0,0:60,75	202:2:0:0:1,1:15,17:1,1:183,220
2	132778740	.	T	A	.	PASS	NT=ref;QSS=31;QSS_NT=31;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	64:2:0:0:0,0:0,0:0,0:62,77	207:3:0:0:13,15:1,1:0,0:190,233
2	132778814	.	G	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	83:2:0:0:1,1:0,0:80,103:0,0	279:3:0:0:18,22:0,1:257,318:1,1
2	132778830	.	C	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	82:2:0:0:1,1:79,103:0,0:0,0	283:4:0:0:21,23:258,324:0,0:0,0
2	132778893	.	A	T	.	PASS	NT=ref;QSS=24;QSS_NT=24;SGT=AA->AT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	55:1:0:0:54,64:0,0:0,0:0,1	188:1:0:0:180,212:1,1:0,0:6,8
2	132784178	.	A	G	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	49:0:0:0:49,56:0,0:0,1:0,0	125:1:0:0:118,124:1,1:5,6:0,0
2	132787160	.	T	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=TT->AT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	52:0:0:0:0,2:0,0:0,0:52,66	164:0:0:0:7,12:0,0:0,0:157,190
2	132804762	rs62162462	C	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=132804762;dbSNPBuildID=129;SSR=0;SAO=0;VP=050000000001000002000100;WGT=1;VC=SNV;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	108:2:0:0:0,0:105,131:0,0:1,2	338:3:0:0:0,0:311,370:0,0:24,26
2	132810451	.	C	T	.	PASS	NT=ref;QSS=23;QSS_NT=23;SGT=CC->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	90:0:0:0:0,0:89,111:0,0:1,4	264:2:0:0:0,0:251,319:0,0:11,17
2	132812281	rs80152647	T	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=132812281;dbSNPBuildID=131;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	45:0:0:0:0,0:0,1:0,0:45,49	146:0:0:0:0,0:15,21:0,0:131,159
2	132814201	.	T	A	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	87:0:0:0:0,1:1,1:0,0:86,102	209:6:0:0:6,12:1,1:0,0:196,246
2	132814410	.	A	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=AA->AC;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	99:1:0:0:97,129:1,1:0,0:0,0	279:5:0:0:263,338:10,10:1,1:0,0
2	132816485	.	A	G	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	41:0:0:0:41,41:0,0:0,1:0,0	116:2:0:0:101,102:0,0:13,18:0,1
2	132816507	.	C	T	.	PASS	NT=ref;QSS=24;QSS_NT=24;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	47:0:0:0:0,0:47,47:0,0:0,0	114:0:0:0:0,0:103,103:0,0:11,16
2	132816515	.	C	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	46:0:0:0:1,1:45,45:0,0:0,0	107:0:0:0:11,16:96,96:0,0:0,0
2	132816544	rs113486892	G	A	.	PASS	NT=ref;QSS=23;QSS_NT=23;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=132816544;dbSNPBuildID=132;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	44:0:0:0:0,0:0,0:44,44:0,0	109:1:0:0:12,17:0,0:95,96:1,1
2	132831573	.	C	T	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	43:1:0:0:0,0:42,48:0,0:0,0	120:1:0:0:0,0:113,125:0,0:6,7
2	132842261	.	T	C	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=TT->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||AC098826.4|unprocessed_pseudogene|NON_CODING|ENST00000433943||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	48:1:0:0:0,0:0,1:0,0:47,50	111:0:0:0:0,0:10,12:0,0:101,101
2	132842290	.	G	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->GT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||AC098826.4|unprocessed_pseudogene|NON_CODING|ENST00000433943||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	44:1:0:0:0,0:0,0:43,45:0,1	118:1:0:0:0,0:0,0:103,104:14,16
2	132890473	rs113516846	T	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=TT->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=EXON(MODIFIER|||||AC098826.5|unprocessed_pseudogene|NON_CODING|ENST00000452011|4|1);RSPOS=132890473;dbSNPBuildID=132;SSR=0;SAO=0;VP=050000000001000002000100;WGT=1;VC=SNV;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	42:0:0:0:0,0:0,1:0,0:42,42	113:0:0:0:0,0:5,5:0,0:108,108
2	132943845	.	C	T	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=CC->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER|||||ANKRD30BL|processed_transcript|CODING|ENST00000470729|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:0:0:0:0,0:40,40:0,0:0,1	123:2:0:0:0,0:105,105:0,0:16,20
2	132966989	.	C	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER|||||ANKRD30BL|processed_transcript|CODING|ENST00000470729|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	72:21:0:0:0,3:51,89:0,2:0,4	181:43:0:0:0,5:130,271:0,3:8,18
2	132969510	.	G	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER|||||ANKRD30BL|processed_transcript|CODING|ENST00000470729|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	45:5:0:0:0,3:0,0:40,53:0,1	160:19:0:0:6,20:0,3:135,181:0,1
2	132984099	rs199721407	A	G	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=AA->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER|||||ANKRD30BL|processed_transcript|CODING|ENST00000470729|1|1);RSPOS=132984099;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000080005000002000100;WGT=1;VC=SNV;INT;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	51:2:0:0:49,56:0,0:0,2:0,0	121:5:0:0:110,135:0,0:6,15:0,0
2	132988503	rs199681549	A	G	.	PASS	NT=ref;QSS=25;QSS_NT=25;SGT=AA->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER|||||ANKRD30BL|processed_transcript|CODING|ENST00000470729|1|1);RSPOS=132988503;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000080005000002000100;WGT=1;VC=SNV;INT;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	60:2:0:0:58,60:0,0:0,2:0,0	105:2:0:0:94,97:0,1:9,22:0,0
2	132988508	.	T	C	.	PASS	NT=ref;QSS=28;QSS_NT=28;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||ANKRD30BL|processed_transcript|CODING|ENST00000470729|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	59:0:0:0:2,2:0,1:0,0:57,58	102:2:0:0:1,1:8,20:0,0:91,96
2	133000043	.	C	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||ANKRD30BL|processed_transcript|CODING|ENST00000470729|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	54:10:0:0:0,1:43,77:0,0:1,2	159:31:0:0:0,5:121,218:0,0:7,17
2	133000081	.	G	A	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||ANKRD30BL|processed_transcript|CODING|ENST00000470729|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	45:11:0:0:0,1:0,1:34,64:0,1	150:27:0:0:7,19:0,0:116,199:0,4
2	133008844	rs111642389	G	C	.	PASS	NT=ref;QSS=44;QSS_NT=44;SGT=GG->CG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=DOWNSTREAM(MODIFIER|||||RNA5-8SP5|rRNA|NON_CODING|ENST00000365304||1),INTRON(MODIFIER|||||ANKRD30BL|processed_transcript|CODING|ENST00000470729|1|1);RSPOS=133008844;dbSNPBuildID=132;SSR=0;SAO=0;VP=050100080001000102000100;GENEINFO=ANKRD30BL:554226;WGT=1;VC=SNV;SLO;INT;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	102:0:0:0:0,0:0,2:102,113:0,0	345:2:0:0:1,1:12,14:329,370:1,1
2	133021981	.	C	T	.	PASS	NT=ref;QSS=34;QSS_NT=34;SGT=CC->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=DOWNSTREAM(MODIFIER|||||CDC27P1|processed_pseudogene|NON_CODING|ENST00000445384||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	108:2:0:0:0,0:106,122:0,0:0,4	238:8:0:0:0,0:211,278:0,1:19,30
2	133022012	.	G	T	.	PASS	NT=ref;QSS=41;QSS_NT=41;SGT=GG->GT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=DOWNSTREAM(MODIFIER|||||CDC27P1|processed_pseudogene|NON_CODING|ENST00000445384||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	100:1:0:0:0,0:0,0:99,112:0,3	224:3:0:0:1,1:0,0:213,276:7,15
2	133023431	.	C	T	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=CC->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=DOWNSTREAM(MODIFIER|||||CDC27P1|processed_pseudogene|NON_CODING|ENST00000445384||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	103:6:0:0:0,0:96,101:1,1:0,2	165:2:0:0:0,0:155,159:1,1:7,8
2	133116419	rs72865327	T	C	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=TT->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=DOWNSTREAM(MODIFIER|||||FAM201B|processed_pseudogene|NON_CODING|ENST00000545408||1),INTERGENIC(MODIFIER||||||||||1);RSPOS=133116419;dbSNPBuildID=131;SSR=0;SAO=0;VP=050000000005000502000100;WGT=1;VC=SNV;ASP;HD;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	61:1:0:0:0,0:0,0:0,0:60,64	184:4:0:0:0,2:8,8:0,0:172,176
2	133118825	.	G	T	.	PASS	NT=ref;QSS=26;QSS_NT=26;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	51:0:0:0:0,0:0,0:51,56:0,0	137:9:0:0:0,0:1,1:120,138:7,13
2	133293257	.	C	G	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||453|GPR39|protein_coding|CODING|ENST00000329321|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:1:0:0:0,0:36,36:0,0:0,0	82:0:0:0:0,0:73,73:9,9:0,0
2	134094456	.	G	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||U6|snRNA|NON_CODING|ENST00000516879||1),INTRON(MODIFIER||||1909|NCKAP5|protein_coding|CODING|ENST00000317721|1|1),INTRON(MODIFIER||||1909|NCKAP5|protein_coding|CODING|ENST00000409261|3|1),INTRON(MODIFIER||||590|NCKAP5|protein_coding|CODING|ENST00000405974|1|1),INTRON(MODIFIER||||590|NCKAP5|protein_coding|CODING|ENST00000409213|3|1),INTRON(MODIFIER||||68|NCKAP5|protein_coding|CODING|ENST00000358991|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:1:0:0:0,0:0,0:30,31:0,0	96:2:0:0:6,7:0,0:88,89:0,0
2	135725332	.	G	A	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=GG->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER||||1215|YSK4|protein_coding|CODING|ENST00000358371|7|1),INTRON(MODIFIER||||1328|YSK4|protein_coding|CODING|ENST00000375845|9|1),INTRON(MODIFIER||||460|YSK4|protein_coding|CODING|ENST00000392917|7|1),INTRON(MODIFIER||||462|YSK4|protein_coding|CODING|ENST00000392918|8|1),INTRON(MODIFIER||||510|YSK4|protein_coding|CODING|ENST00000375844|8|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	47:0:0:0:0,0:0,0:47,47:0,0	98:1:0:0:7,13:0,0:90,91:0,0
2	135725343	.	T	G	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1215|YSK4|protein_coding|CODING|ENST00000358371|7|1),INTRON(MODIFIER||||1328|YSK4|protein_coding|CODING|ENST00000375845|9|1),INTRON(MODIFIER||||460|YSK4|protein_coding|CODING|ENST00000392917|7|1),INTRON(MODIFIER||||462|YSK4|protein_coding|CODING|ENST00000392918|8|1),INTRON(MODIFIER||||510|YSK4|protein_coding|CODING|ENST00000375844|8|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	46:0:0:0:0,0:0,0:0,0:46,46	98:1:0:0:0,0:0,0:7,13:90,91
2	135725410	.	C	T	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1215|YSK4|protein_coding|CODING|ENST00000358371|7|1),INTRON(MODIFIER||||1328|YSK4|protein_coding|CODING|ENST00000375845|9|1),INTRON(MODIFIER||||460|YSK4|protein_coding|CODING|ENST00000392917|7|1),INTRON(MODIFIER||||462|YSK4|protein_coding|CODING|ENST00000392918|8|1),INTRON(MODIFIER||||510|YSK4|protein_coding|CODING|ENST00000375844|8|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	53:0:0:0:0,0:53,53:0,0:0,0	114:5:0:0:0,0:104,109:0,0:5,8
2	137656149	.	G	C	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1606|THSD7B|protein_coding|CODING|ENST00000409968|2|1),INTRON(MODIFIER||||1609|THSD7B|protein_coding|CODING|ENST00000272643|1|1),INTRON(MODIFIER|||||THSD7B|processed_transcript|CODING|ENST00000472720|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:1:0:0:1,1:2,2:31,32:0,0	60:7:0:0:0,0:14,18:39,42:0,0
2	137791144	rs182988050	T	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1578|THSD7B|protein_coding|CODING|ENST00000413152|1|1),INTRON(MODIFIER||||1606|THSD7B|protein_coding|CODING|ENST00000409968|2|1),INTRON(MODIFIER||||1609|THSD7B|protein_coding|CODING|ENST00000272643|1|1),INTRON(MODIFIER|||||THSD7B|processed_transcript|CODING|ENST00000472720|3|1);RSPOS=137791144;GMAF=0.0005;dbSNPBuildID=135;SSR=0;SAO=0;VP=050000080005000014000100;GENEINFO=THSD7B:80731;WGT=1;VC=SNV;INT;ASP;KGPhase1;KGPROD	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:0:0:0:0,0:0,0:0,0:33,33	112:1:0:0:0,0:8,8:0,0:103,104
2	139029044	.	C	A	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:0:0:0:0,0:34,35:0,0:0,0	95:1:0:0:7,7:87,88:0,0:0,0
2	139539207	.	G	A	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER||||264|NXPH2|protein_coding|CODING|ENST00000272641||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:0:0:0:0,0:0,0:39,39:0,0	90:1:0:0:9,9:0,0:80,81:0,0
2	140036049	.	C	A	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:0:0:0:0,0:34,34:0,0:0,0	105:0:0:0:7,7:98,98:0,0:0,0
2	141845999	.	C	T	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||4599|LRP1B|protein_coding|CODING|ENST00000389484|7|1),INTRON(MODIFIER||||780|LRP1B|protein_coding|CODING|ENST00000434794|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	46:1:0:0:0,0:45,47:0,0:0,0	113:0:0:0:0,0:106,106:0,0:7,7
2	143764079	.	G	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->CG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER||||465|KYNU|protein_coding|CODING|ENST00000264170|10|1),INTRON(MODIFIER||||465|KYNU|protein_coding|CODING|ENST00000409512|11|1),UPSTREAM(MODIFIER|||||AC013444.2|miRNA|NON_CODING|ENST00000408242||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	19:0:0:0:0,0:0,1:19,19:0,0	66:2:0:0:0,0:12,18:52,53:0,0
2	145313688	.	A	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	41:0:0:0:41,42:0,0:0,0:0,0	110:2:0:0:101,102:0,0:6,8:1,1
2	149270531	.	C	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=EXON(MODIFIER|||||MBD5|retained_intron|CODING|ENST00000496893|5|1),UTR_3_PRIME(MODIFIER||||1494|MBD5|protein_coding|CODING|ENST00000407073|15|1),UTR_3_PRIME(MODIFIER||||1727|MBD5|protein_coding|CODING|ENST00000404807|10|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:1:0:0:0,0:35,36:0,0:0,0	111:1:0:0:1,1:99,99:0,1:10,10
2	149940161	.	C	T	.	PASS	NT=ref;QSS=27;QSS_NT=27;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||183|LYPD6B|protein_coding|CODING|ENST00000409029|1|1),INTRON(MODIFIER||||183|LYPD6B|protein_coding|CODING|ENST00000409876|1|1),INTRON(MODIFIER||||207|LYPD6B|protein_coding|CODING|ENST00000409642|1|1),INTRON(MODIFIER|||||LYPD6B|processed_transcript|CODING|ENST00000473800|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	55:0:0:0:0,0:55,55:0,0:0,0	112:1:0:0:0,0:101,101:0,1:10,10
2	150111212	.	C	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	28:0:0:0:0,0:28,28:0,0:0,0	107:0:0:0:0,0:101,105:0,0:6,6
2	150915138	.	T	C	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	43:1:0:0:0,0:0,0:0,0:42,43	102:2:0:0:0,0:8,9:0,0:92,93
2	151908501	.	G	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER||||91|AC023469.1|protein_coding|CODING|ENST00000409243||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:0:0:0:0,0:0,0:29,29:0,0	120:1:0:0:0,1:13,13:106,106:0,0
2	152732481	.	G	A	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=DOWNSTREAM(MODIFIER||||107|CACNB4|protein_coding|CODING|ENST00000434468||1),INTRON(MODIFIER||||458|CACNB4|protein_coding|CODING|ENST00000201943|5|1),INTRON(MODIFIER||||473|CACNB4|protein_coding|CODING|ENST00000397327|5|1),INTRON(MODIFIER||||486|CACNB4|protein_coding|CODING|ENST00000534999|4|1),INTRON(MODIFIER||||487|CACNB4|protein_coding|CODING|ENST00000360283|4|1),INTRON(MODIFIER||||502|CACNB4|protein_coding|CODING|ENST00000427385|5|1),INTRON(MODIFIER||||515|CACNB4|protein_coding|CODING|ENST00000439467|4|1),INTRON(MODIFIER||||520|CACNB4|protein_coding|CODING|ENST00000539935|5|1),INTRON(MODIFIER||||521|CACNB4|protein_coding|CODING|ENST00000339254|5|1),INTRON(MODIFIER|||||CACNB4|retained_intron|CODING|ENST00000470066|4|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	51:7:0:0:0,1:1,1:43,53:0,0	98:9:0:0:7,9:0,0:82,100:0,0
2	153797403	.	T	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	27:0:0:0:0,0:0,0:0,0:27,27	93:1:0:0:0,0:8,8:1,1:83,84
2	155426545	rs12989962	A	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=155426545;GMAF=0.2885;dbSNPBuildID=121;SSR=0;SAO=0;VP=050100000005000116000100;WGT=1;VC=SNV;SLO;ASP;GNO;KGPhase1;KGPROD;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	14:0:0:0:14,14:0,0:0,0:0,0	62:3:0:0:46,47:0,0:0,0:13,16
2	155740356	.	C	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:0:0:0:0,0:40,40:0,0:0,0	98:2:0:0:0,0:92,95:0,0:4,4
2	156651451	.	C	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:0:0:0:1,1:33,33:0,0:0,0	99:0:0:0:0,0:90,90:0,0:9,9
2	156887320	.	G	T	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||AC073551.1|processed_pseudogene|NON_CODING|ENST00000450741||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	42:0:0:0:0,0:0,0:42,42:0,0	103:1:0:0:0,0:0,0:93,94:9,9
2	157219346	.	C	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:1:0:0:0,0:30,31:0,0:0,0	88:0:0:0:0,0:82,82:0,0:6,6
2	157513173	.	G	A	.	PASS	NT=ref;QSS=24;QSS_NT=24;SGT=GG->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	47:0:0:0:0,0:0,0:47,47:0,0	104:1:0:0:13,13:0,0:90,91:0,0
2	157832065	.	C	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:1:0:0:0,0:31,32:0,0:0,0	104:0:0:0:6,6:98,98:0,0:0,0
2	158081378	.	G	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:1:0:0:0,0:0,0:28,29:0,0	100:2:0:0:0,0:0,0:88,90:10,10
2	159200200	.	C	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||255|CCDC148|protein_coding|CODING|ENST00000409889|3|1),INTRON(MODIFIER||||299|CCDC148|protein_coding|CODING|ENST00000536771|1|1),INTRON(MODIFIER||||591|CCDC148|protein_coding|CODING|ENST00000283233|3|1),INTRON(MODIFIER||||600|CCDC148|protein_coding|CODING|ENST00000409187|4|1),INTRON(MODIFIER|||||CCDC148|nonsense_mediated_decay|CODING|ENST00000417066|1|1),INTRON(MODIFIER|||||CCDC148|nonsense_mediated_decay|CODING|ENST00000448656|2|1),INTRON(MODIFIER|||||CCDC148|nonsense_mediated_decay|CODING|ENST00000451554|2|1),INTRON(MODIFIER|||||CCDC148|nonsense_mediated_decay|CODING|ENST00000454257|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:0:0:0:0,0:40,40:0,0:0,0	99:2:0:0:4,4:93,95:0,0:0,0
2	159704992	.	G	A	.	PASS	NT=ref;QSS=24;QSS_NT=24;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||113|DAPL1|protein_coding|CODING|ENST00000409042|4|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	53:1:0:0:0,0:0,0:52,53:0,0	100:0:0:0:7,10:0,0:93,93:0,0
2	162319211	.	C	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||SLC4A10|processed_transcript|CODING|ENST00000482861|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:1:0:0:0,0:34,36:0,0:0,0	114:3:0:0:0,0:103,106:0,0:8,8
2	163580718	.	T	A	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1196|KCNH7|protein_coding|CODING|ENST00000332142|2|1),INTRON(MODIFIER||||732|KCNH7|protein_coding|CODING|ENST00000328032|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:0:0:0:0,0:0,0:0,0:37,37	101:1:0:0:14,15:0,0:0,0:86,86
2	164036116	.	A	T	.	PASS	NT=ref;QSS=26;QSS_NT=26;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	52:0:0:0:52,53:0,0:0,0:0,0	83:3:0:0:73,76:0,0:0,0:7,8
2	167299574	.	C	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1682|SCN7A|protein_coding|CODING|ENST00000409855|13|1),INTRON(MODIFIER||||862|SCN7A|protein_coding|CODING|ENST00000419992|14|1),INTRON(MODIFIER|||||SCN7A|nonsense_mediated_decay|CODING|ENST00000424326|13|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:0:0:0:0,0:32,32:0,0:0,0	119:0:0:0:0,0:110,111:0,0:9,9
2	167325029	.	C	T	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1682|SCN7A|protein_coding|CODING|ENST00000409855|6|1),INTRON(MODIFIER||||401|SCN7A|protein_coding|CODING|ENST00000441411|6|1),INTRON(MODIFIER||||862|SCN7A|protein_coding|CODING|ENST00000419992|7|1),INTRON(MODIFIER|||||SCN7A|nonsense_mediated_decay|CODING|ENST00000424326|6|1),UPSTREAM(MODIFIER|||||SCN7A|retained_intron|CODING|ENST00000497562||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:0:0:0:0,0:37,37:0,0:0,0	97:2:0:0:0,0:88,89:0,0:7,8
2	168207431	rs199695685	G	T	.	PASS	NT=ref;QSS=23;QSS_NT=23;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||AC074363.1|lincRNA|NON_CODING|ENST00000442316|1|1);RSPOS=168207431;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000000009000402000100;WGT=1;VC=SNV;CFL;HD;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	45:0:0:0:0,0:0,0:45,45:0,0	132:0:0:0:0,0:0,0:124,124:8,10
2	169487157	.	G	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||384|CERS6|protein_coding|CODING|ENST00000305747|3|1),INTRON(MODIFIER||||392|CERS6|protein_coding|CODING|ENST00000392687|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	27:0:0:0:0,0:0,0:27,27:0,0	101:0:0:0:0,0:5,5:96,97:0,0
2	171533212	.	A	C	.	PASS	NT=ref;QSS=23;QSS_NT=23;SGT=AA->AC;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER|||||AC007277.3|processed_transcript|NON_CODING|ENST00000428156|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	49:0:0:0:49,49:0,0:0,0:0,0	97:2:0:0:84,85:11,11:0,0:0,0
2	174159141	.	C	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||RP11-1O7.1|processed_pseudogene|NON_CODING|ENST00000433054||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:1:0:0:0,0:33,35:0,0:0,0	107:0:0:0:1,1:99,101:0,0:7,7
2	174340959	.	C	G	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||AC073465.2|processed_pseudogene|NON_CODING|ENST00000448468||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	44:0:0:0:0,0:44,44:0,0:0,0	111:0:0:0:0,0:105,105:6,6:0,0
2	174525199	.	G	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:1:0:0:0,0:0,0:29,30:0,0	97:0:0:0:0,0:0,0:90,90:7,7
2	176113679	.	G	T	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:0:0:0:0,0:0,0:39,39:0,0	121:1:0:0:0,1:0,0:115,115:5,5
2	177637409	.	G	T	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||AC092162.1|processed_transcript|NON_CODING|ENST00000451851|4|1),INTRON(MODIFIER|||||AC092162.1|retained_intron|NON_CODING|ENST00000428283|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:0:0:0:0,0:0,0:35,35:0,0	111:2:0:0:0,0:0,0:95,97:14,14
2	180077555	.	C	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER||||142|SESTD1|protein_coding|CODING|ENST00000435047|1|1),INTRON(MODIFIER||||145|SESTD1|protein_coding|CODING|ENST00000440010|1|1),INTRON(MODIFIER||||696|SESTD1|protein_coding|CODING|ENST00000428443|1|1),INTRON(MODIFIER|||||SESTD1|nonsense_mediated_decay|CODING|ENST00000452991|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	55:0:0:0:0,0:55,55:0,0:0,3	102:1:0:0:0,0:96,97:0,0:5,8
2	180077622	.	G	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER||||142|SESTD1|protein_coding|CODING|ENST00000435047|1|1),INTRON(MODIFIER||||145|SESTD1|protein_coding|CODING|ENST00000440010|1|1),INTRON(MODIFIER||||696|SESTD1|protein_coding|CODING|ENST00000428443|1|1),INTRON(MODIFIER|||||SESTD1|nonsense_mediated_decay|CODING|ENST00000452991|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	47:0:0:0:0,3:0,0:47,47:0,0	97:0:0:0:5,8:0,0:92,92:0,0
2	182094808	.	T	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||AC104820.2|lincRNA|NON_CODING|ENST00000424170|2|1),INTRON(MODIFIER|||||AC104820.2|lincRNA|NON_CODING|ENST00000424655|2|1),INTRON(MODIFIER|||||AC104820.2|lincRNA|NON_CODING|ENST00000428474|2|1),INTRON(MODIFIER|||||AC104820.2|lincRNA|NON_CODING|ENST00000435411|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:0:0:0:0,0:0,0:0,0:32,32	102:0:0:0:4,4:0,0:0,0:98,98
2	182211576	.	C	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||AC104820.2|lincRNA|NON_CODING|ENST00000424655||1),INTRON(MODIFIER|||||AC104820.2|lincRNA|NON_CODING|ENST00000428474|2|1),INTRON(MODIFIER|||||AC104820.2|lincRNA|NON_CODING|ENST00000435411|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:1:0:0:0,0:37,43:0,0:0,0	115:2:0:0:0,0:104,129:0,0:9,18
2	183362009	.	G	C	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||441|PDE1A|protein_coding|CODING|ENST00000536095|1|1),INTRON(MODIFIER||||535|PDE1A|protein_coding|CODING|ENST00000358139|1|1),INTRON(MODIFIER||||535|PDE1A|protein_coding|CODING|ENST00000410103|2|1),INTRON(MODIFIER||||545|PDE1A|protein_coding|CODING|ENST00000331935|1|1),INTRON(MODIFIER||||545|PDE1A|protein_coding|CODING|ENST00000435564|1|1),INTRON(MODIFIER||||552|PDE1A|protein_coding|CODING|ENST00000456212|1|1),INTRON(MODIFIER|||||PDE1A|processed_transcript|CODING|ENST00000462938|1|1),INTRON(MODIFIER|||||PDE1A|processed_transcript|CODING|ENST00000482782|2|1),INTRON(MODIFIER|||||PDE1A|processed_transcript|CODING|ENST00000495511|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	44:3:0:0:0,0:0,0:41,44:0,0	87:3:0:0:0,0:7,8:77,80:0,0
2	188942148	.	G	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||AC068718.1|lincRNA|NON_CODING|ENST00000434418|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:0:0:0:0,0:0,0:33,34:0,0	96:1:0:0:7,7:0,0:88,89:0,0
2	189307401	.	G	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||167|GULP1|protein_coding|CODING|ENST00000409637|2|1),INTRON(MODIFIER||||167|GULP1|protein_coding|CODING|ENST00000410051|2|1),INTRON(MODIFIER||||201|GULP1|protein_coding|CODING|ENST00000409805|2|1),INTRON(MODIFIER||||291|GULP1|protein_coding|CODING|ENST00000409843|2|1),INTRON(MODIFIER||||304|GULP1|protein_coding|CODING|ENST00000359135|2|1),INTRON(MODIFIER||||304|GULP1|protein_coding|CODING|ENST00000409580|3|1),INTRON(MODIFIER||||304|GULP1|protein_coding|CODING|ENST00000409609|2|1),INTRON(MODIFIER||||304|GULP1|protein_coding|CODING|ENST00000409830|2|1),INTRON(MODIFIER||||67|GULP1|protein_coding|CODING|ENST00000409927|2|1),INTRON(MODIFIER|||||GULP1|processed_transcript|CODING|ENST00000479019|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:0:0:0:0,0:0,0:34,34:0,0	126:1:0:0:6,6:0,0:119,120:0,0
2	192201642	.	G	A	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1078|MYO1B|protein_coding|CODING|ENST00000339514|4|1),INTRON(MODIFIER||||1107|MYO1B|protein_coding|CODING|ENST00000392316|3|1),INTRON(MODIFIER||||1136|MYO1B|protein_coding|CODING|ENST00000304164|4|1),INTRON(MODIFIER||||1136|MYO1B|protein_coding|CODING|ENST00000392318|4|1),INTRON(MODIFIER||||148|MYO1B|protein_coding|CODING|ENST00000438652|4|1),INTRON(MODIFIER||||162|MYO1B|protein_coding|CODING|ENST00000418908|4|1),INTRON(MODIFIER||||302|MYO1B|protein_coding|CODING|ENST00000451437|4|1),INTRON(MODIFIER|||||MYO1B|retained_intron|CODING|ENST00000471904|4|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:0:0:0:0,0:0,0:37,37:0,0	108:1:0:0:10,10:0,0:97,97:0,1
2	194724435	.	G	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	27:0:0:0:0,0:0,0:27,27:0,0	106:4:0:0:7,7:0,0:95,100:0,0
2	194995291	.	G	C	.	PASS	NT=ref;QSS=26;QSS_NT=26;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||GLULP6|processed_pseudogene|NON_CODING|ENST00000399502||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	51:0:0:0:0,0:0,0:51,51:0,0	101:3:0:0:0,0:11,11:87,89:0,1
2	195072425	.	T	A	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	48:2:0:0:0,0:0,0:0,0:46,48	87:0:0:0:4,4:0,0:1,1:82,82
2	195095423	.	C	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:1:0:0:0,0:30,31:0,0:0,0	95:3:0:0:0,0:81,84:0,0:11,11
2	195610295	.	G	T	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||AC006196.1|lincRNA|NON_CODING|ENST00000447194|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:0:0:0:0,0:0,0:39,39:0,0	107:1:0:0:0,0:1,1:94,94:11,12
2	198505107	.	C	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->AC;SOMATIC;TQSS=2;TQSS_NT=2;EFF=DOWNSTREAM(MODIFIER||||115|RFTN2|protein_coding|CODING|ENST00000429081||1),INTRON(MODIFIER||||501|RFTN2|protein_coding|CODING|ENST00000295049|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	51:1:0:0:0,1:50,54:0,0:0,0	113:2:0:0:6,9:105,120:0,0:0,5
2	198554812	.	A	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER||||86|AC011997.1|protein_coding|CODING|ENST00000409845||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	43:0:0:0:43,48:0,0:0,1:0,0	89:0:0:0:83,95:0,0:6,8:0,0
2	199655047	.	C	T	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:0:0:0:0,0:36,36:0,0:0,0	105:1:0:0:0,0:97,97:0,0:7,8
2	199857580	.	A	C	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||AC018717.1|lincRNA|NON_CODING|ENST00000456031|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:0:0:0:34,34:0,0:0,0:0,0	90:1:0:0:83,84:5,5:1,1:0,0
2	200288167	.	C	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||615|SATB2|protein_coding|CODING|ENST00000428695|2|1),INTRON(MODIFIER||||674|SATB2|protein_coding|CODING|ENST00000443023|2|1),INTRON(MODIFIER||||733|SATB2|protein_coding|CODING|ENST00000260926|4|1),INTRON(MODIFIER||||733|SATB2|protein_coding|CODING|ENST00000417098|3|1),INTRON(MODIFIER||||733|SATB2|protein_coding|CODING|ENST00000457245|4|1),INTRON(MODIFIER|||||SATB2|nonsense_mediated_decay|CODING|ENST00000440919|3|1),INTRON(MODIFIER|||||SATB2|processed_transcript|CODING|ENST00000484124|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	42:0:0:0:0,0:42,43:0,0:0,0	121:0:0:0:6,6:115,115:0,0:0,0
2	200837321	.	G	A	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	44:1:0:0:0,0:0,0:43,44:0,0	95:1:0:0:8,8:1,1:85,86:0,0
2	201980515	.	T	C	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER||||128|CFLAR|protein_coding|CODING|ENST00000441224||1),UPSTREAM(MODIFIER||||221|CFLAR|protein_coding|CODING|ENST00000341222||1),UPSTREAM(MODIFIER||||250|CFLAR|protein_coding|CODING|ENST00000395148||1),UPSTREAM(MODIFIER||||292|CFLAR|protein_coding|CODING|ENST00000342795||1),UPSTREAM(MODIFIER||||300|CFLAR|protein_coding|CODING|ENST00000355558||1),UPSTREAM(MODIFIER||||384|CFLAR|protein_coding|CODING|ENST00000443227||1),UPSTREAM(MODIFIER||||445|CFLAR|protein_coding|CODING|ENST00000341582||1),UPSTREAM(MODIFIER||||462|CFLAR|protein_coding|CODING|ENST00000340870||1),UPSTREAM(MODIFIER||||480|CFLAR|protein_coding|CODING|ENST00000309955||1),UPSTREAM(MODIFIER||||480|CFLAR|protein_coding|CODING|ENST00000423241||1),UPSTREAM(MODIFIER||||63|CFLAR|protein_coding|CODING|ENST00000433445||1),UPSTREAM(MODIFIER|||||CFLAR|nonsense_mediated_decay|CODING|ENST00000439154||1),UPSTREAM(MODIFIER|||||CFLAR|processed_transcript|CODING|ENST00000490965||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	42:0:0:0:0,0:0,0:0,0:42,42	122:1:0:0:0,0:5,7:1,1:115,117
2	202030596	.	T	A	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||300|CFLAR|protein_coding|CODING|ENST00000355558||1),DOWNSTREAM(MODIFIER||||384|CFLAR|protein_coding|CODING|ENST00000443227||1),DOWNSTREAM(MODIFIER||||445|CFLAR|protein_coding|CODING|ENST00000341582||1),DOWNSTREAM(MODIFIER||||462|CFLAR|protein_coding|CODING|ENST00000340870||1),DOWNSTREAM(MODIFIER||||462|CFLAR|protein_coding|CODING|ENST00000457277||1),DOWNSTREAM(MODIFIER||||480|CFLAR|protein_coding|CODING|ENST00000309955||1),DOWNSTREAM(MODIFIER||||480|CFLAR|protein_coding|CODING|ENST00000423241||1),DOWNSTREAM(MODIFIER|||||CFLAR|retained_intron|CODING|ENST00000474842||1),DOWNSTREAM(MODIFIER|||||CFLAR|retained_intron|CODING|ENST00000479953||1),INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||AC007283.4|processed_pseudogene|NON_CODING|ENST00000424739||1),UPSTREAM(MODIFIER|||||AC007283.5|lincRNA|NON_CODING|ENST00000434645||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	44:0:0:0:0,0:0,0:0,0:44,44	114:0:0:0:7,9:0,0:0,0:107,107
2	202428214	.	G	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->GT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER||||1820|ALS2CR11|protein_coding|CODING|ENST00000439140|9|1),INTRON(MODIFIER||||395|ALS2CR11|protein_coding|CODING|ENST00000439802|9|1),INTRON(MODIFIER||||550|ALS2CR11|protein_coding|CODING|ENST00000450242|9|1),INTRON(MODIFIER||||623|ALS2CR11|protein_coding|CODING|ENST00000286195|9|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:4:0:0:0,0:0,0:35,43:0,0	56:0:0:0:0,0:0,0:52,58:4,4
2	202428246	.	T	C	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1820|ALS2CR11|protein_coding|CODING|ENST00000439140|9|1),INTRON(MODIFIER||||395|ALS2CR11|protein_coding|CODING|ENST00000439802|9|1),INTRON(MODIFIER||||550|ALS2CR11|protein_coding|CODING|ENST00000450242|9|1),INTRON(MODIFIER||||623|ALS2CR11|protein_coding|CODING|ENST00000286195|9|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	45:1:0:0:0,0:0,0:0,0:44,49	89:7:0:0:0,0:6,8:0,0:76,83
2	202844302	.	T	C	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:1:0:0:0,0:0,0:0,0:38,40	75:2:0:0:0,0:6,7:0,0:67,73
2	204122723	rs11684604	G	C	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||257|CYP20A1|protein_coding|CODING|ENST00000443941|4|1),INTRON(MODIFIER||||462|CYP20A1|protein_coding|CODING|ENST00000356079|4|1),INTRON(MODIFIER||||470|CYP20A1|protein_coding|CODING|ENST00000429815|4|1),INTRON(MODIFIER|||||CYP20A1|nonsense_mediated_decay|CODING|ENST00000428265|3|1),INTRON(MODIFIER|||||CYP20A1|nonsense_mediated_decay|CODING|ENST00000431118|3|1),INTRON(MODIFIER|||||CYP20A1|nonsense_mediated_decay|CODING|ENST00000449301|4|1),INTRON(MODIFIER|||||CYP20A1|processed_transcript|CODING|ENST00000461371|2|1),INTRON(MODIFIER|||||CYP20A1|processed_transcript|CODING|ENST00000463131|2|1),INTRON(MODIFIER|||||CYP20A1|processed_transcript|CODING|ENST00000489360|2|1),UPSTREAM(MODIFIER|||||Metazoa_SRP|misc_RNA|NON_CODING|ENST00000577235||1);RSPOS=204122723;dbSNPBuildID=120;SSR=0;SAO=0;VP=050000080001040102000100;GENEINFO=CYP20A1:57404;WGT=1;VC=SNV;INT;VLD;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:1:0:0:0,0:0,0:37,37:0,1	111:3:0:0:0,0:6,8:101,102:1,1
2	205069555	.	C	T	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	43:1:0:0:0,0:42,43:0,0:0,0	120:2:0:0:0,1:110,113:0,0:8,10
2	205922081	.	C	T	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1104|PARD3B|protein_coding|CODING|ENST00000349953|4|1),INTRON(MODIFIER||||1136|PARD3B|protein_coding|CODING|ENST00000351153|4|1),INTRON(MODIFIER||||1143|PARD3B|protein_coding|CODING|ENST00000358768|4|1),INTRON(MODIFIER||||1205|PARD3B|protein_coding|CODING|ENST00000406610|4|1),INTRON(MODIFIER|||||PARD3B|processed_transcript|CODING|ENST00000462231|4|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:0:1:0:0,0:36,36:1,1:0,0	89:1:0:0:0,0:81,83:1,2:6,6
2	206034496	.	C	G	.	PASS	NT=ref;QSS=23;QSS_NT=23;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1104|PARD3B|protein_coding|CODING|ENST00000349953|11|1),INTRON(MODIFIER||||1136|PARD3B|protein_coding|CODING|ENST00000351153|11|1),INTRON(MODIFIER||||1143|PARD3B|protein_coding|CODING|ENST00000358768|10|1),INTRON(MODIFIER||||1205|PARD3B|protein_coding|CODING|ENST00000406610|11|1),INTRON(MODIFIER|||||PARD3B|processed_transcript|CODING|ENST00000462231|11|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	46:0:0:0:0,0:46,46:0,0:0,0	94:0:0:0:0,0:86,86:8,8:0,0
2	208702738	.	C	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER||||761|PLEKHM3|protein_coding|CODING|ENST00000427836|7|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	42:1:0:0:0,0:41,42:0,0:0,0	104:3:0:0:0,0:93,96:0,0:8,8
2	208735432	.	C	A	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||717|PLEKHM3|protein_coding|CODING|ENST00000389247|6|1),INTRON(MODIFIER||||761|PLEKHM3|protein_coding|CODING|ENST00000427836|6|1),UPSTREAM(MODIFIER|||||AC083900.1|sense_intronic|NON_CODING|ENST00000421964||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:0:0:0:0,0:37,37:0,0:0,0	108:1:0:0:6,6:101,102:0,0:0,0
2	209502436	.	A	G	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRAGENIC(MODIFIER|||||PTH2R||CODING|||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	46:0:0:0:46,47:0,0:0,0:0,0	109:0:0:0:102,103:0,0:7,7:0,0
2	209738140	.	G	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:0:0:0:0,0:0,0:35,35:0,0	122:0:0:0:0,0:0,0:114,114:8,8
2	211121625	.	G	C	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:0:0:0:0,0:0,0:39,40:0,0	98:2:0:0:0,0:7,7:89,91:0,0
2	211362613	.	C	T	.	PASS	NT=ref;QSS=23;QSS_NT=23;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||120|CPS1|protein_coding|CODING|ENST00000417946|1|1),INTRON(MODIFIER||||120|CPS1|protein_coding|CODING|ENST00000518043|1|1),INTRON(MODIFIER||||1506|CPS1|protein_coding|CODING|ENST00000430249|1|1),INTRON(MODIFIER||||156|CPS1|protein_coding|CODING|ENST00000523702|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	42:0:0:0:0,0:42,44:0,0:0,0	89:3:0:0:0,0:75,78:0,0:11,14
2	211362617	rs35013022	C	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||120|CPS1|protein_coding|CODING|ENST00000417946|1|1),INTRON(MODIFIER||||120|CPS1|protein_coding|CODING|ENST00000518043|1|1),INTRON(MODIFIER||||1506|CPS1|protein_coding|CODING|ENST00000430249|1|1),INTRON(MODIFIER||||156|CPS1|protein_coding|CODING|ENST00000523702|1|1);RSPOS=211362617;GMAF=0.266;dbSNPBuildID=126;SSR=0;SAO=0;VP=050100080005070116000100;GENEINFO=CPS1:1373;WGT=1;VC=SNV;SLO;INT;ASP;VLD;G5A;G5;GNO;KGPhase1;KGPROD;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	41:0:0:0:0,0:40,42:0,0:1,1	88:3:0:0:0,0:74,75:0,0:11,15
2	212452352	.	T	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1292|ERBB4|protein_coding|CODING|ENST00000436443|19|1),INTRON(MODIFIER||||1298|ERBB4|protein_coding|CODING|ENST00000402597|19|1),INTRON(MODIFIER||||1308|ERBB4|protein_coding|CODING|ENST00000342788|19|1),INTRON(MODIFIER|||||ERBB4|retained_intron|CODING|ENST00000484594|19|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:1:0:0:0,0:0,0:0,0:33,34	93:3:0:0:0,0:4,6:0,0:86,89
2	212966063	.	A	G	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||127|ERBB4|protein_coding|CODING|ENST00000435846|2|1),INTRON(MODIFIER||||1292|ERBB4|protein_coding|CODING|ENST00000436443|2|1),INTRON(MODIFIER||||1298|ERBB4|protein_coding|CODING|ENST00000402597|2|1),INTRON(MODIFIER||||1308|ERBB4|protein_coding|CODING|ENST00000342788|2|1),INTRON(MODIFIER|||||ERBB4|retained_intron|CODING|ENST00000484594|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:0:0:0:35,35:0,0:0,0:0,0	93:1:0:0:85,86:0,0:7,7:0,0
2	213568142	rs188500634	T	C	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||AC093865.1|processed_transcript|NON_CODING|ENST00000415387|4|1);RSPOS=213568142;GMAF=0.0009;dbSNPBuildID=135;SSR=0;SAO=0;VP=050000000005000014000100;WGT=1;VC=SNV;ASP;KGPhase1;KGPROD	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:1:0:0:0,0:0,0:0,1:38,39	96:0:0:0:0,0:8,8:0,0:88,88
2	214438246	.	C	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||255|SPAG16|protein_coding|CODING|ENST00000451561|1|1),INTRON(MODIFIER||||537|SPAG16|protein_coding|CODING|ENST00000374309|8|1),INTRON(MODIFIER||||631|SPAG16|protein_coding|CODING|ENST00000331683|10|1),INTRON(MODIFIER|||||AC114499.1|antisense|NON_CODING|ENST00000451880|1|1),INTRON(MODIFIER|||||SPAG16|nonsense_mediated_decay|CODING|ENST00000406979|12|1),INTRON(MODIFIER|||||SPAG16|nonsense_mediated_decay|CODING|ENST00000452556|8|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:0:0:0:0,0:34,34:0,0:0,0	128:2:0:0:1,1:116,118:0,0:9,9
2	214721463	.	G	A	.	PASS	NT=ref;QSS=25;QSS_NT=25;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||255|SPAG16|protein_coding|CODING|ENST00000451561|1|1),INTRON(MODIFIER||||537|SPAG16|protein_coding|CODING|ENST00000374309|8|1),INTRON(MODIFIER||||631|SPAG16|protein_coding|CODING|ENST00000331683|10|1),INTRON(MODIFIER|||||SPAG16|nonsense_mediated_decay|CODING|ENST00000406979|12|1),INTRON(MODIFIER|||||SPAG16|nonsense_mediated_decay|CODING|ENST00000452556|8|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	52:2:0:0:0,0:0,0:50,52:0,0	95:2:0:0:8,9:0,0:85,87:0,0
2	215231804	.	G	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||255|SPAG16|protein_coding|CODING|ENST00000451561|5|1),INTRON(MODIFIER||||537|SPAG16|protein_coding|CODING|ENST00000374309|13|1),INTRON(MODIFIER||||631|SPAG16|protein_coding|CODING|ENST00000331683|15|1),INTRON(MODIFIER|||||AC107218.3|processed_transcript|NON_CODING|ENST00000412896|3|1),INTRON(MODIFIER|||||AC107218.3|processed_transcript|NON_CODING|ENST00000437883|4|1),INTRON(MODIFIER|||||SPAG16|nonsense_mediated_decay|CODING|ENST00000406979|17|1),INTRON(MODIFIER|||||SPAG16|processed_transcript|CODING|ENST00000480494|4|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:0:0:0:0,0:0,0:33,33:0,0	94:1:0:0:0,0:0,0:86,86:7,8
2	218464603	.	A	G	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=EXON(MODIFIER|||||DIRC3|processed_transcript|CODING|ENST00000474063|1|1),EXON(MODIFIER|||||DIRC3|processed_transcript|CODING|ENST00000486365|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	44:0:0:0:44,44:0,0:0,0:0,0	87:1:0:0:81,82:0,0:5,5:0,0
2	219032748	.	C	A	.	PASS	NT=ref;QSS=27;QSS_NT=27;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER||||350|CXCR1|protein_coding|CODING|ENST00000295683||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	55:0:0:0:0,0:55,55:0,0:0,0	110:0:0:0:6,6:104,105:0,0:0,0
2	219727628	.	A	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||365|WNT6|protein_coding|CODING|ENST00000233948|1|1),INTRON(MODIFIER|||||WNT6|processed_transcript|CODING|ENST00000486233|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	41:0:0:0:40,41:1,1:0,0:0,0	88:2:0:0:79,79:0,0:7,9:0,0
2	219823043	.	G	A	.	PASS	NT=ref;QSS=24;QSS_NT=24;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||AC097468.7|processed_transcript|NON_CODING|ENST00000429343|1|1),UPSTREAM(MODIFIER||||367|CDK5R2|protein_coding|CODING|ENST00000302625||1),UPSTREAM(MODIFIER|||||KRT8P30|processed_pseudogene|NON_CODING|ENST00000432100||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	47:0:0:0:0,0:0,0:47,47:0,0	115:1:0:0:12,13:0,1:102,102:0,0
2	221143753	.	C	T	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||AC114765.1|lincRNA|NON_CODING|ENST00000432993|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	44:2:0:0:0,0:42,46:0,0:0,0	106:5:0:0:0,0:90,95:0,1:11,12
2	221915950	.	A	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:0:0:0:29,29:0,0:0,0:0,0	103:0:0:0:94,94:0,0:0,0:9,9
2	222109748	.	G	C	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:0:0:0:0,0:0,0:36,37:0,0	85:4:0:0:0,0:8,9:73,76:0,0
2	222444439	.	A	G	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:1:0:0:37,39:1,1:0,0:0,0	113:2:0:0:101,102:2,4:8,8:0,0
2	222470364	.	C	T	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	42:2:0:0:0,0:40,42:0,0:0,0	103:0:0:0:1,1:96,96:0,0:6,6
2	223681413	.	G	A	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=GG->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	21:1:0:0:0,0:0,0:20,25:0,0	24:2:0:0:5,6:0,1:17,29:0,0
2	223681448	.	C	T	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	22:2:0:0:0,0:19,24:1,1:0,0	25:4:0:0:0,0:13,30:0,0:8,8
2	225196248	.	A	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:1:0:0:34,35:0,0:0,0:0,0	96:0:0:0:87,87:1,1:0,0:8,8
2	225434590	.	A	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||702|CUL3|protein_coding|CODING|ENST00000344951|1|1),INTRON(MODIFIER||||768|CUL3|protein_coding|CODING|ENST00000264414|1|1),UPSTREAM(MODIFIER||||744|CUL3|protein_coding|CODING|ENST00000409096||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	28:1:0:0:27,30:0,0:0,0:0,0	69:4:0:0:61,64:4,5:0,0:0,0
2	226062668	.	G	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:0:0:0:0,0:0,0:30,30:0,0	127:2:0:0:0,0:0,0:114,116:11,11
2	228957249	.	A	G	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1671|SPHKAP|protein_coding|CODING|ENST00000344657|3|1),INTRON(MODIFIER||||1700|SPHKAP|protein_coding|CODING|ENST00000392056|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:1:0:0:35,36:0,0:0,0:0,0	110:4:0:0:99,105:0,0:7,7:0,0
2	229692436	.	G	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:0:0:0:0,0:0,0:32,32:0,0	101:0:0:0:9,9:0,0:92,93:0,0
2	229724283	.	G	A	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||PID1|processed_transcript|CODING|ENST00000482518|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:0:0:0:0,0:0,0:37,37:0,0	99:2:0:0:10,11:0,0:87,88:0,0
2	230802906	.	C	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||157|FBXO36|protein_coding|CODING|ENST00000373652|2|1),INTRON(MODIFIER||||168|FBXO36|protein_coding|CODING|ENST00000409992|1|1),INTRON(MODIFIER||||188|FBXO36|protein_coding|CODING|ENST00000283946|1|1),INTRON(MODIFIER|||||FBXO36|retained_intron|CODING|ENST00000465090|1|1),UPSTREAM(MODIFIER|||||FBXO36-IT1|sense_intronic|NON_CODING|ENST00000432957||1),UPSTREAM(MODIFIER|||||U6|snRNA|NON_CODING|ENST00000516524||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:2:0:0:0,0:33,37:1,1:0,0	98:7:0:0:5,6:85,91:1,1:0,0
2	231480797	.	A	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:1:0:0:34,35:0,0:0,0:0,0	110:1:0:0:102,104:0,0:7,7:0,1
2	231841419	.	C	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	27:0:0:0:0,0:27,27:0,0:0,0	88:0:0:0:0,0:78,78:0,0:10,10
2	232305548	.	G	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||AC017104.4|processed_pseudogene|NON_CODING|ENST00000417000||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:0:0:0:0,0:0,0:32,32:0,0	102:2:0:0:10,12:1,1:89,92:0,0
2	232511111	.	C	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||Metazoa_SRP|misc_RNA|NON_CODING|ENST00000481141||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:1:0:0:0,0:30,31:0,0:0,0	96:2:0:0:6,6:87,89:1,1:0,0
2	232695611	.	T	C	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:0:0:0:1,1:0,0:2,2:35,38	100:3:0:0:0,0:9,10:3,3:85,100
2	232698283	.	T	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	48:2:0:0:0,0:1,1:1,1:44,50	101:3:0:0:0,0:10,12:0,1:88,91
2	232876633	.	C	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||143|DIS3L2|protein_coding|CODING|ENST00000441279|1|1),INTRON(MODIFIER||||249|DIS3L2|protein_coding|CODING|ENST00000409401|1|1),INTRON(MODIFIER||||356|DIS3L2|protein_coding|CODING|ENST00000360410|1|1),INTRON(MODIFIER||||603|DIS3L2|protein_coding|CODING|ENST00000273009|1|1),INTRON(MODIFIER||||885|DIS3L2|protein_coding|CODING|ENST00000325385|1|1),INTRON(MODIFIER|||||AC105461.1|antisense|NON_CODING|ENST00000413841|1|1),INTRON(MODIFIER|||||DIS3L2|nonsense_mediated_decay|CODING|ENST00000390005|1|1),INTRON(MODIFIER|||||DIS3L2|nonsense_mediated_decay|CODING|ENST00000445090|1|1),UPSTREAM(MODIFIER||||885|DIS3L2|protein_coding|CODING|ENST00000409307||1),UPSTREAM(MODIFIER|||||DIS3L2|nonsense_mediated_decay|CODING|ENST00000433430||1),UPSTREAM(MODIFIER|||||DIS3L2|processed_transcript|CODING|ENST00000470087||1),UPSTREAM(MODIFIER|||||DIS3L2|retained_intron|CODING|ENST00000464554||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:1:0:0:0,0:35,36:0,0:0,0	93:1:0:0:0,0:88,90:0,0:4,4
2	235292809	.	C	A	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:0:0:0:0,0:37,37:0,0:0,0	121:2:0:0:9,11:110,112:0,0:0,0
2	236445263	.	C	G	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||116|AGAP1|protein_coding|CODING|ENST00000402604|1|1),INTRON(MODIFIER||||405|AGAP1|protein_coding|CODING|ENST00000409457|1|1),INTRON(MODIFIER||||804|AGAP1|protein_coding|CODING|ENST00000336665|1|1),INTRON(MODIFIER||||857|AGAP1|protein_coding|CODING|ENST00000304032|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:3:0:0:0,0:35,39:0,0:0,0	91:4:0:0:1,1:81,89:5,6:0,0
2	236908234	.	T	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1069|AGAP1|protein_coding|CODING|ENST00000409538|12|1),INTRON(MODIFIER||||696|AGAP1|protein_coding|CODING|ENST00000428334|9|1),INTRON(MODIFIER||||804|AGAP1|protein_coding|CODING|ENST00000336665|12|1),INTRON(MODIFIER||||857|AGAP1|protein_coding|CODING|ENST00000304032|13|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:1:0:0:0,0:0,0:1,1:29,30	116:8:0:0:0,0:9,10:1,2:98,106
2	238962843	.	T	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-526L8.1|nonsense_mediated_decay|NON_CODING|ENST00000449191|8|1),INTRON(MODIFIER|||||RP11-526L8.1|nonsense_mediated_decay|NON_CODING|ENST00000449891|7|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:0:0:0:0,0:0,0:0,0:29,30	97:2:0:0:0,0:6,6:0,0:89,93
2	239609825	.	C	T	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:0:0:0:0,0:40,40:0,0:0,0	119:0:0:0:0,0:114,114:0,0:5,5
2	239686007	rs62189939	C	T	.	PASS	NT=ref;QSS=23;QSS_NT=23;SGT=CC->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=239686007;dbSNPBuildID=129;SSR=0;SAO=0;VP=050000000001000002000100;WGT=1;VC=SNV;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	26:1:0:0:0,0:25,52:0,0:0,1	42:1:0:0:0,0:29,111:0,0:12,21
2	239691923	.	T	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:2:0:0:0,0:0,0:0,0:30,34	111:10:0:0:5,7:0,0:0,2:96,104
2	239718522	rs150907314	G	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=239718522;dbSNPBuildID=134;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:0:0:0:0,0:1,1:29,29:0,0	100:1:0:0:11,11:0,1:88,89:0,0
2	240046628	rs74000700	G	A	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||HDAC4|retained_intron|CODING|ENST00000461113||1),INTRON(MODIFIER||||1084|HDAC4|protein_coding|CODING|ENST00000345617|12|1),INTRON(MODIFIER||||668|HDAC4|protein_coding|CODING|ENST00000543185|6|1),INTRON(MODIFIER||||737|HDAC4|protein_coding|CODING|ENST00000541256|10|1),INTRON(MODIFIER|||||HDAC4|retained_intron|CODING|ENST00000463007|11|1),INTRON(MODIFIER|||||HDAC4|retained_intron|CODING|ENST00000493582|12|1),INTRON(MODIFIER|||||HDAC4|retained_intron|CODING|ENST00000535493|11|1);RSPOS=240046628;dbSNPBuildID=130;SSR=0;SAO=0;VP=050100080001040102000100;GENEINFO=HDAC4:9759;WGT=1;VC=SNV;SLO;INT;VLD;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	54:4:0:0:0,0:0,0:50,57:0,0	135:16:0:0:6,14:0,2:112,128:1,3
2	240393095	.	G	A	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	43:1:0:0:0,0:0,0:42,43:0,0	106:2:0:0:8,9:0,0:96,96:0,0
2	240612385	rs187380796	C	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=240612385;GMAF=0.0211;dbSNPBuildID=135;SSR=0;SAO=0;VP=050000000005000014000100;WGT=1;VC=SNV;ASP;KGPhase1;KGPROD	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:5:0:0:0,0:34,39:0,0:0,0	105:4:0:0:0,0:92,97:1,1:8,8
2	240705631	rs201100691	A	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||58|AC093802.1|protein_coding|CODING|ENST00000407524|2|1);RSPOS=240705631;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000080005000002000100;WGT=1;VC=SNV;INT;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:1:1:0:33,34:0,0:0,0:0,0	92:0:0:0:87,87:0,0:5,5:0,0
2	241064496	.	A	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||252|MYEOV2|protein_coding|CODING|ENST00000307266||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:6:0:0:25,30:0,0:1,2:0,0	106:16:0:0:70,72:1,1:19,32:0,1
2	241097046	.	C	T	.	PASS	NT=ref;QSS=26;QSS_NT=26;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	50:1:0:0:0,0:49,51:0,0:0,0	99:6:0:0:0,0:81,91:0,1:12,13
2	241125129	.	A	G	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:1:0:0:32,34:0,0:0,0:0,0	102:3:0:0:90,93:0,0:9,11:0,0
2	241556421	.	A	C	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||309|GPR35|protein_coding|CODING|ENST00000319838|3|1),INTRON(MODIFIER||||309|GPR35|protein_coding|CODING|ENST00000403859|3|1),INTRON(MODIFIER||||340|GPR35|protein_coding|CODING|ENST00000438013|3|1),UTR_3_PRIME(MODIFIER||||139|CAPN10|protein_coding|CODING|ENST00000270364|4|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	45:1:0:0:44,46:0,0:0,0:0,0	127:3:0:0:114,116:9,9:1,2:0,0
2	241580426	.	C	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:5:0:0:0,0:33,44:0,0:0,1	64:10:0:0:0,0:48,63:0,0:6,13
2	241987323	.	C	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1324|SNED1|protein_coding|CODING|ENST00000401884|8|1),INTRON(MODIFIER||||1352|SNED1|protein_coding|CODING|ENST00000405547|8|1),INTRON(MODIFIER||||1380|SNED1|protein_coding|CODING|ENST00000342631|8|1),INTRON(MODIFIER||||1413|SNED1|protein_coding|CODING|ENST00000310397|8|1),INTRON(MODIFIER|||||AC005237.4|antisense|NON_CODING|ENST00000458377|1|1),UPSTREAM(MODIFIER|||||SNED1|processed_transcript|CODING|ENST00000469006||1),UPSTREAM(MODIFIER|||||SNED1|retained_intron|CODING|ENST00000483962||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:0:0:0:0,0:36,36:0,0:1,1	89:2:0:0:0,0:74,77:1,1:12,17
2	242530007	rs79624012	T	A	.	PASS	NT=ref;QSS=24;QSS_NT=24;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||THAP4|processed_transcript|CODING|ENST00000497486||1),INTRON(MODIFIER||||165|THAP4|protein_coding|CODING|ENST00000402136|4|1),INTRON(MODIFIER||||192|THAP4|protein_coding|CODING|ENST00000402545|4|1),INTRON(MODIFIER||||577|THAP4|protein_coding|CODING|ENST00000407315|5|1),INTRON(MODIFIER|||||THAP4|retained_intron|CODING|ENST00000321679|1|1);RSPOS=242530007;dbSNPBuildID=131;SSR=0;SAO=0;VP=050000080005040102000100;GENEINFO=THAP4:51078;WGT=1;VC=SNV;INT;ASP;VLD;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	49:1:0:0:0,2:0,0:0,3:48,83	147:11:0:0:9,19:1,5:1,9:125,189
2	242838695	.	T	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||90|AC131097.4|protein_coding|CODING|ENST00000401641|2|1),INTRON(MODIFIER||||95|AC131097.4|protein_coding|CODING|ENST00000404031|2|1),INTRON(MODIFIER||||99|AC131097.4|protein_coding|CODING|ENST00000452112|2|1),INTRON(MODIFIER|||||AC131097.3|processed_transcript|NON_CODING|ENST00000415434|2|1),INTRON(MODIFIER|||||AC131097.3|processed_transcript|NON_CODING|ENST00000429947|2|1),INTRON(MODIFIER|||||AC131097.3|processed_transcript|NON_CODING|ENST00000430555|2|1),INTRON(MODIFIER|||||AC131097.3|processed_transcript|NON_CODING|ENST00000457686|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:4:1:0:0,2:0,0:0,1:27,84	73:15:0:0:5,18:0,0:1,3:52,175
2	242985349	rs117627261	A	G	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||AC093642.6|lincRNA|NON_CODING|ENST00000446593||1),INTRON(MODIFIER|||||AC131097.3|processed_transcript|NON_CODING|ENST00000415434|3|1);RSPOS=242985349;GMAF=0.114;dbSNPBuildID=132;SSR=0;SAO=0;VP=050000000005070016000100;WGT=1;VC=SNV;ASP;VLD;G5A;G5;KGPhase1;KGPROD;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	43:1:0:0:42,44:0,0:0,0:0,0	100:2:0:0:93,97:0,0:5,5:0,0
3	644372	rs113209223	C	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->CG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER|||||AC090044.1|processed_transcript|NON_CODING|ENST00000420823|2|1),INTRON(MODIFIER|||||AC090044.1|processed_transcript|NON_CODING|ENST00000442809|2|1);RSPOS=644372;dbSNPBuildID=132;SSR=0;SAO=0;VP=050000000001040102000100;WGT=1;VC=SNV;VLD;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	41:0:0:0:0,0:41,45:0,3:0,0	143:1:0:0:0,0:125,135:17,26:0,0
3	1072985	.	T	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->GT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:0:0:0:0,0:0,0:0,1:35,35	118:2:0:0:0,0:0,0:5,10:111,114
3	1121743	.	T	A	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:3:0:0:0,0:0,0:0,0:36,39	104:12:0:0:6,6:0,0:0,0:86,99
3	1241868	.	C	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1028|CNTN6|protein_coding|CODING|ENST00000350110|2|1),INTRON(MODIFIER||||1028|CNTN6|protein_coding|CODING|ENST00000446702|2|1),INTRON(MODIFIER||||956|CNTN6|protein_coding|CODING|ENST00000539053|1|1),INTRON(MODIFIER|||||CNTN6|nonsense_mediated_decay|CODING|ENST00000394261|3|1),INTRON(MODIFIER|||||CNTN6|nonsense_mediated_decay|CODING|ENST00000397479|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	27:0:0:0:0,0:27,28:0,0:0,0	92:2:0:0:9,9:81,84:0,0:0,0
3	1972626	.	G	T	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:0:0:0:0,0:0,0:36,36:0,0	114:2:0:0:0,0:0,0:105,107:7,7
3	2292431	.	G	T	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1026|CNTN4|protein_coding|CODING|ENST00000397461|1|1),INTRON(MODIFIER||||1026|CNTN4|protein_coding|CODING|ENST00000418658|2|1),INTRON(MODIFIER||||115|CNTN4|protein_coding|CODING|ENST00000422330|1|1),INTRON(MODIFIER||||53|CNTN4|protein_coding|CODING|ENST00000455083|2|1),INTRON(MODIFIER|||||CNTN4|nonsense_mediated_decay|CODING|ENST00000427741|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:0:0:0:0,0:0,0:38,38:0,0	91:0:0:0:0,0:0,0:87,89:4,4
3	3411775	.	G	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||AC026188.1|lincRNA|NON_CODING|ENST00000420000|3|1),INTRON(MODIFIER|||||AC026188.1|lincRNA|NON_CODING|ENST00000451031|2|1),INTRON(MODIFIER|||||AC026188.1|lincRNA|NON_CODING|ENST00000455703|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:0:0:0:0,0:0,0:30,30:0,0	102:0:0:0:0,0:11,11:90,91:1,1
3	5192053	.	T	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||163|ARL8B|protein_coding|CODING|ENST00000419534|1|1),INTRON(MODIFIER||||186|ARL8B|protein_coding|CODING|ENST00000256496|1|1),INTRON(MODIFIER|||||ARL8B|nonsense_mediated_decay|CODING|ENST00000429403|2|1),INTRON(MODIFIER|||||ARL8B|nonsense_mediated_decay|CODING|ENST00000455168|1|1),INTRON(MODIFIER|||||ARL8B|retained_intron|CODING|ENST00000444332|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:0:0:0:0,0:0,0:1,1:31,34	96:4:0:0:0,0:5,7:0,0:87,90
3	7984147	.	C	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	46:0:0:0:0,0:45,45:1,1:0,0	106:1:0:0:0,0:97,107:8,12:0,0
3	8088170	.	A	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||AC087859.1|processed_transcript|NON_CODING|ENST00000446281|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	53:2:0:0:49,51:1,1:0,0:1,2	137:4:0:0:122,129:11,11:0,0:0,0
3	10157316	.	G	A	.	PASS	NT=ref;QSS=24;QSS_NT=24;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=UPSTREAM(MODIFIER||||105|BRK1|protein_coding|CODING|ENST00000256463||1),UTR_5_PRIME(MODIFIER||||75|BRK1|protein_coding|CODING|ENST00000530758|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	47:0:0:0:0,0:0,0:47,47:0,0	113:1:0:0:6,6:0,0:106,107:0,0
3	10218634	.	C	A	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=CC->AC;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER||||625|IRAK2|protein_coding|CODING|ENST00000256458|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	49:0:0:0:0,0:49,50:0,0:0,0	85:1:0:0:5,5:79,84:0,0:0,0
3	10223932	.	T	C	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||625|IRAK2|protein_coding|CODING|ENST00000256458|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:1:0:0:0,0:0,0:0,0:36,39	92:4:0:0:1,1:6,6:0,0:81,89
3	11209242	.	T	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||487|HRH1|protein_coding|CODING|ENST00000431010|1|1),INTRON(MODIFIER||||487|HRH1|protein_coding|CODING|ENST00000438284|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	53:0:0:0:0,0:0,0:0,0:53,54	125:1:0:0:0,0:6,7:0,0:118,121
3	11765671	.	A	G	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||AC090939.1|processed_transcript|NON_CODING|ENST00000414047|1|1),INTRON(MODIFIER|||||AC090939.2|lincRNA|NON_CODING|ENST00000426495|1|1),UPSTREAM(MODIFIER||||168|VGLL4|protein_coding|CODING|ENST00000417206||1),UPSTREAM(MODIFIER||||199|VGLL4|protein_coding|CODING|ENST00000418000||1),UPSTREAM(MODIFIER||||222|VGLL4|protein_coding|CODING|ENST00000445411||1),UPSTREAM(MODIFIER||||290|VGLL4|protein_coding|CODING|ENST00000273038||1),UPSTREAM(MODIFIER||||295|VGLL4|protein_coding|CODING|ENST00000404339||1),UPSTREAM(MODIFIER|||||VGLL4|nonsense_mediated_decay|CODING|ENST00000417466||1),UPSTREAM(MODIFIER|||||VGLL4|nonsense_mediated_decay|CODING|ENST00000426568||1),UPSTREAM(MODIFIER|||||VGLL4|processed_transcript|CODING|ENST00000463387||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:1:0:0:38,39:0,0:0,0:0,0	111:1:0:0:100,102:1,1:9,10:0,0
3	14678428	.	G	A	.	PASS	NT=ref;QSS=23;QSS_NT=23;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	47:1:0:0:0,0:0,0:46,47:0,0	119:1:0:0:12,12:0,0:106,107:0,0
3	16612793	.	A	G	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:1:0:0:31,32:0,0:0,0:0,0	93:6:1:0:82,88:0,0:5,5:0,0
3	20109260	rs7645350	A	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||832|KAT2B|protein_coding|CODING|ENST00000263754|1|1),INTRON(MODIFIER|||||KAT2B|processed_transcript|CODING|ENST00000426228|1|1);RSPOS=20109260;GMAF=0.4995;dbSNPBuildID=116;SSR=0;SAO=0;VP=050100080005040116000100;GENEINFO=KAT2B:8850;WGT=1;VC=SNV;SLO;INT;ASP;VLD;GNO;KGPhase1;KGPROD;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:0:0:0:32,33:0,1:0,0:0,0	96:0:0:0:89,90:0,0:7,8:0,0
3	20896840	.	C	T	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	45:4:0:0:0,0:39,52:2,2:0,0	68:6:0:0:0,0:55,67:1,2:6,10
3	20917117	.	G	C	.	PASS	NT=ref;QSS=27;QSS_NT=27;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	54:0:0:0:0,0:0,0:54,54:0,0	95:1:0:0:0,0:6,6:88,89:0,0
3	21752847	.	A	G	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||395|ZNF385D|protein_coding|CODING|ENST00000281523|1|1),INTRON(MODIFIER|||||ZNF385D|nonsense_mediated_decay|CODING|ENST00000446749|1|1),INTRON(MODIFIER|||||ZNF385D|processed_transcript|CODING|ENST00000478967|1|1),INTRON(MODIFIER|||||ZNF385D|processed_transcript|CODING|ENST00000494108|3|1),INTRON(MODIFIER|||||ZNF385D|processed_transcript|CODING|ENST00000494118|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:0:0:0:38,40:0,0:0,0:0,0	100:0:0:0:91,91:0,0:9,9:0,0
3	21752871	.	C	T	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||395|ZNF385D|protein_coding|CODING|ENST00000281523|1|1),INTRON(MODIFIER|||||ZNF385D|nonsense_mediated_decay|CODING|ENST00000446749|1|1),INTRON(MODIFIER|||||ZNF385D|processed_transcript|CODING|ENST00000478967|1|1),INTRON(MODIFIER|||||ZNF385D|processed_transcript|CODING|ENST00000494108|3|1),INTRON(MODIFIER|||||ZNF385D|processed_transcript|CODING|ENST00000494118|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	41:0:0:0:0,0:41,42:0,0:0,0	102:1:0:0:0,0:92,93:0,0:9,9
3	21753178	.	G	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||395|ZNF385D|protein_coding|CODING|ENST00000281523|1|1),INTRON(MODIFIER|||||ZNF385D|nonsense_mediated_decay|CODING|ENST00000446749|1|1),INTRON(MODIFIER|||||ZNF385D|processed_transcript|CODING|ENST00000478967|1|1),INTRON(MODIFIER|||||ZNF385D|processed_transcript|CODING|ENST00000494108|3|1),INTRON(MODIFIER|||||ZNF385D|processed_transcript|CODING|ENST00000494118|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:0:0:0:0,0:0,0:35,35:0,0	108:0:0:0:0,0:0,0:101,101:7,7
3	24324606	.	G	A	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||102|THRB|protein_coding|CODING|ENST00000447414|2|1),INTRON(MODIFIER||||113|THRB|protein_coding|CODING|ENST00000431815|2|1),INTRON(MODIFIER||||120|THRB|protein_coding|CODING|ENST00000453729|3|1),INTRON(MODIFIER||||121|THRB|protein_coding|CODING|ENST00000415021|3|1),INTRON(MODIFIER||||121|THRB|protein_coding|CODING|ENST00000447875|4|1),INTRON(MODIFIER||||131|THRB|protein_coding|CODING|ENST00000413780|3|1),INTRON(MODIFIER||||461|THRB|protein_coding|CODING|ENST00000356447|2|1),INTRON(MODIFIER||||461|THRB|protein_coding|CODING|ENST00000396671|3|1),INTRON(MODIFIER||||461|THRB|protein_coding|CODING|ENST00000416420|4|1),INTRON(MODIFIER||||62|THRB|protein_coding|CODING|ENST00000418247|3|1),INTRON(MODIFIER||||66|THRB|protein_coding|CODING|ENST00000428492|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:1:0:0:0,0:0,0:38,47:0,0	85:0:0:0:5,9:0,0:80,99:0,0
3	24324619	.	C	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||102|THRB|protein_coding|CODING|ENST00000447414|2|1),INTRON(MODIFIER||||113|THRB|protein_coding|CODING|ENST00000431815|2|1),INTRON(MODIFIER||||120|THRB|protein_coding|CODING|ENST00000453729|3|1),INTRON(MODIFIER||||121|THRB|protein_coding|CODING|ENST00000415021|3|1),INTRON(MODIFIER||||121|THRB|protein_coding|CODING|ENST00000447875|4|1),INTRON(MODIFIER||||131|THRB|protein_coding|CODING|ENST00000413780|3|1),INTRON(MODIFIER||||461|THRB|protein_coding|CODING|ENST00000356447|2|1),INTRON(MODIFIER||||461|THRB|protein_coding|CODING|ENST00000396671|3|1),INTRON(MODIFIER||||461|THRB|protein_coding|CODING|ENST00000416420|4|1),INTRON(MODIFIER||||62|THRB|protein_coding|CODING|ENST00000418247|3|1),INTRON(MODIFIER||||66|THRB|protein_coding|CODING|ENST00000428492|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:2:0:0:0,0:37,50:0,0:0,0	94:2:0:0:5,8:87,108:0,0:0,0
3	24324630	.	A	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||102|THRB|protein_coding|CODING|ENST00000447414|2|1),INTRON(MODIFIER||||113|THRB|protein_coding|CODING|ENST00000431815|2|1),INTRON(MODIFIER||||120|THRB|protein_coding|CODING|ENST00000453729|3|1),INTRON(MODIFIER||||121|THRB|protein_coding|CODING|ENST00000415021|3|1),INTRON(MODIFIER||||121|THRB|protein_coding|CODING|ENST00000447875|4|1),INTRON(MODIFIER||||131|THRB|protein_coding|CODING|ENST00000413780|3|1),INTRON(MODIFIER||||461|THRB|protein_coding|CODING|ENST00000356447|2|1),INTRON(MODIFIER||||461|THRB|protein_coding|CODING|ENST00000396671|3|1),INTRON(MODIFIER||||461|THRB|protein_coding|CODING|ENST00000416420|4|1),INTRON(MODIFIER||||62|THRB|protein_coding|CODING|ENST00000418247|3|1),INTRON(MODIFIER||||66|THRB|protein_coding|CODING|ENST00000428492|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:1:0:0:37,49:0,0:0,0:0,0	104:2:0:0:97,118:0,0:0,0:5,9
3	27238453	.	C	T	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1172|NEK10|protein_coding|CODING|ENST00000429845|26|1),INTRON(MODIFIER||||404|NEK10|protein_coding|CODING|ENST00000357467|7|1),INTRON(MODIFIER||||427|NEK10|protein_coding|CODING|ENST00000383770|4|1),INTRON(MODIFIER||||474|NEK10|protein_coding|CODING|ENST00000383771|4|1),INTRON(MODIFIER||||484|NEK10|protein_coding|CODING|ENST00000295720|4|1),INTRON(MODIFIER|||||NEK10|retained_intron|CODING|ENST00000574215|8|1),UPSTREAM(MODIFIER|||||NEK10|processed_transcript|CODING|ENST00000460447||1),UPSTREAM(MODIFIER|||||NEK10|processed_transcript|CODING|ENST00000498182||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	43:0:0:0:0,0:43,44:0,0:0,0	116:1:0:0:0,0:105,105:0,0:10,11
3	28773064	.	T	A	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||AC109586.1|antisense|NON_CODING|ENST00000432518|2|1),INTRON(MODIFIER|||||AC109586.1|antisense|NON_CODING|ENST00000443912|1|1),INTRON(MODIFIER|||||AC109586.1|antisense|NON_CODING|ENST00000445077|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:1:0:0:0,0:0,0:0,0:34,35	119:4:0:0:14,16:0,0:0,0:101,103
3	30384269	.	C	T	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	43:1:0:0:0,0:42,43:0,0:0,0	95:2:0:0:1,1:86,90:1,1:5,5
3	30619887	.	G	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:2:0:0:0,0:0,0:30,31:0,1	101:3:0:0:8,9:0,0:90,92:0,0
3	32950396	.	A	G	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	41:0:0:0:39,40:2,2:0,0:0,0	106:1:0:0:100,103:0,0:5,5:0,0
3	32950400	.	T	G	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	42:0:0:0:0,0:0,0:0,0:42,43	107:1:0:0:0,0:0,1:8,8:98,100
3	32978040	.	C	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:0:0:0:0,0:32,32:0,0:0,0	98:1:0:0:0,0:89,91:0,0:8,8
3	33699275	.	G	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1273|CLASP2|protein_coding|CODING|ENST00000461133|1|1),INTRON(MODIFIER||||1293|CLASP2|protein_coding|CODING|ENST00000480013|1|1),INTRON(MODIFIER||||1505|CLASP2|protein_coding|CODING|ENST00000359576|7|1),INTRON(MODIFIER||||1513|CLASP2|protein_coding|CODING|ENST00000399362|7|1),INTRON(MODIFIER||||1514|CLASP2|protein_coding|CODING|ENST00000468888|7|1),INTRON(MODIFIER||||177|CLASP2|protein_coding|CODING|ENST00000496954|1|1),INTRON(MODIFIER||||995|CLASP2|protein_coding|CODING|ENST00000307312|7|1),INTRON(MODIFIER|||||CLASP2|processed_transcript|CODING|ENST00000482896|1|1),INTRON(MODIFIER|||||CLASP2|processed_transcript|CODING|ENST00000498331|2|1),INTRON(MODIFIER|||||CLASP2|retained_intron|CODING|ENST00000486796|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:0:0:0:0,0:0,0:34,34:0,0	122:2:0:0:1,2:0,0:112,113:7,7
3	35581303	.	A	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:0:3:0:32,33:0,0:0,0:0,0	114:4:7:0:104,116:0,0:0,0:6,6
3	36479372	.	C	A	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||251|STAC|protein_coding|CODING|ENST00000434649|1|1),INTRON(MODIFIER||||341|STAC|protein_coding|CODING|ENST00000457375|1|1),INTRON(MODIFIER||||402|STAC|protein_coding|CODING|ENST00000273183|1|1),INTRON(MODIFIER|||||STAC|nonsense_mediated_decay|CODING|ENST00000427486|1|1),INTRON(MODIFIER|||||STAC|processed_transcript|CODING|ENST00000476388|2|1),INTRON(MODIFIER|||||STAC|processed_transcript|CODING|ENST00000486143|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:1:0:0:0,0:34,35:0,0:0,0	84:0:0:0:11,11:73,74:0,0:0,0
3	36588382	.	G	C	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||341|STAC|protein_coding|CODING|ENST00000457375||1),UTR_3_PRIME(MODIFIER||||402|STAC|protein_coding|CODING|ENST00000273183|11|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	45:0:0:0:0,0:0,0:45,45:0,0	107:1:0:0:0,0:5,5:101,102:0,0
3	37287547	.	A	G	.	PASS	NT=ref;QSS=23;QSS_NT=23;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||117|GOLGA4|protein_coding|CODING|ENST00000431105|1|1),INTRON(MODIFIER||||166|GOLGA4|protein_coding|CODING|ENST00000444882|1|1),INTRON(MODIFIER||||2230|GOLGA4|protein_coding|CODING|ENST00000361924|1|1),INTRON(MODIFIER||||2243|GOLGA4|protein_coding|CODING|ENST00000356847|1|1),INTRON(MODIFIER||||444|GOLGA4|protein_coding|CODING|ENST00000450863|1|1),INTRON(MODIFIER||||584|GOLGA4|protein_coding|CODING|ENST00000429018|1|1),INTRON(MODIFIER|||||GOLGA4|processed_transcript|CODING|ENST00000419177|1|1),INTRON(MODIFIER|||||GOLGA4|processed_transcript|CODING|ENST00000435830|2|1),UPSTREAM(MODIFIER|||||AC097359.1|pseudogene|NON_CODING|ENST00000313442||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	46:0:0:0:46,46:0,0:0,0:0,0	100:1:0:0:90,92:0,0:9,9:0,0
3	38094513	.	C	T	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||AC144536.4|processed_pseudogene|NON_CODING|ENST00000420526||1),INTRON(MODIFIER||||1755|DLEC1|protein_coding|CODING|ENST00000308059|2|1),INTRON(MODIFIER||||1758|DLEC1|protein_coding|CODING|ENST00000452631|2|1),INTRON(MODIFIER||||1778|DLEC1|protein_coding|CODING|ENST00000346219|2|1),INTRON(MODIFIER|||||DLEC1|retained_intron|CODING|ENST00000440294|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	68:2:0:0:0,0:66,68:0,0:0,2	108:0:0:0:0,0:102,102:0,0:6,10
3	40997875	.	C	T	.	PASS	NT=ref;QSS=26;QSS_NT=26;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	23:0:0:0:0,0:23,26:0,0:0,0	51:0:0:0:0,0:39,41:0,0:12,13
3	42716074	.	T	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||Metazoa_SRP|misc_RNA|NON_CODING|ENST00000462015||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:0:0:0:0,0:0,0:0,0:31,31	104:1:0:0:0,0:7,8:0,0:96,98
3	44389724	.	T	C	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||496|TCAIM|protein_coding|CODING|ENST00000342649|1|1),INTRON(MODIFIER||||496|TCAIM|protein_coding|CODING|ENST00000417237|1|1),INTRON(MODIFIER||||70|TCAIM|protein_coding|CODING|ENST00000383746|1|1),INTRON(MODIFIER||||70|TCAIM|protein_coding|CODING|ENST00000396078|1|1),INTRON(MODIFIER|||||TCAIM|nonsense_mediated_decay|CODING|ENST00000412611|1|1),INTRON(MODIFIER|||||TCAIM|nonsense_mediated_decay|CODING|ENST00000417768|1|1),INTRON(MODIFIER|||||TCAIM|nonsense_mediated_decay|CODING|ENST00000431657|1|1),INTRON(MODIFIER|||||TCAIM|processed_transcript|CODING|ENST00000444602|1|1),INTRON(MODIFIER|||||TCAIM|processed_transcript|CODING|ENST00000494638|1|1),INTRON(MODIFIER|||||TCAIM|retained_intron|CODING|ENST00000462230|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	41:0:0:0:0,0:0,0:0,0:41,42	102:2:0:0:0,0:9,11:0,0:91,93
3	44389725	.	G	A	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||496|TCAIM|protein_coding|CODING|ENST00000342649|1|1),INTRON(MODIFIER||||496|TCAIM|protein_coding|CODING|ENST00000417237|1|1),INTRON(MODIFIER||||70|TCAIM|protein_coding|CODING|ENST00000383746|1|1),INTRON(MODIFIER||||70|TCAIM|protein_coding|CODING|ENST00000396078|1|1),INTRON(MODIFIER|||||TCAIM|nonsense_mediated_decay|CODING|ENST00000412611|1|1),INTRON(MODIFIER|||||TCAIM|nonsense_mediated_decay|CODING|ENST00000417768|1|1),INTRON(MODIFIER|||||TCAIM|nonsense_mediated_decay|CODING|ENST00000431657|1|1),INTRON(MODIFIER|||||TCAIM|processed_transcript|CODING|ENST00000444602|1|1),INTRON(MODIFIER|||||TCAIM|processed_transcript|CODING|ENST00000494638|1|1),INTRON(MODIFIER|||||TCAIM|retained_intron|CODING|ENST00000462230|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	41:0:0:0:0,0:0,0:41,43:0,0	103:2:0:0:9,11:0,0:92,93:0,1
3	44389804	.	G	A	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||496|TCAIM|protein_coding|CODING|ENST00000342649|1|1),INTRON(MODIFIER||||496|TCAIM|protein_coding|CODING|ENST00000417237|1|1),INTRON(MODIFIER||||70|TCAIM|protein_coding|CODING|ENST00000383746|1|1),INTRON(MODIFIER||||70|TCAIM|protein_coding|CODING|ENST00000396078|1|1),INTRON(MODIFIER|||||TCAIM|nonsense_mediated_decay|CODING|ENST00000412611|1|1),INTRON(MODIFIER|||||TCAIM|nonsense_mediated_decay|CODING|ENST00000417768|1|1),INTRON(MODIFIER|||||TCAIM|nonsense_mediated_decay|CODING|ENST00000431657|1|1),INTRON(MODIFIER|||||TCAIM|processed_transcript|CODING|ENST00000444602|1|1),INTRON(MODIFIER|||||TCAIM|processed_transcript|CODING|ENST00000494638|1|1),INTRON(MODIFIER|||||TCAIM|retained_intron|CODING|ENST00000462230|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	44:0:0:0:0,0:0,0:44,45:0,0	127:2:0:0:9,10:0,1:116,117:0,0
3	44389808	.	C	A	.	PASS	NT=ref;QSS=23;QSS_NT=23;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||496|TCAIM|protein_coding|CODING|ENST00000342649|1|1),INTRON(MODIFIER||||496|TCAIM|protein_coding|CODING|ENST00000417237|1|1),INTRON(MODIFIER||||70|TCAIM|protein_coding|CODING|ENST00000383746|1|1),INTRON(MODIFIER||||70|TCAIM|protein_coding|CODING|ENST00000396078|1|1),INTRON(MODIFIER|||||TCAIM|nonsense_mediated_decay|CODING|ENST00000412611|1|1),INTRON(MODIFIER|||||TCAIM|nonsense_mediated_decay|CODING|ENST00000417768|1|1),INTRON(MODIFIER|||||TCAIM|nonsense_mediated_decay|CODING|ENST00000431657|1|1),INTRON(MODIFIER|||||TCAIM|processed_transcript|CODING|ENST00000444602|1|1),INTRON(MODIFIER|||||TCAIM|processed_transcript|CODING|ENST00000494638|1|1),INTRON(MODIFIER|||||TCAIM|retained_intron|CODING|ENST00000462230|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	46:0:0:0:0,0:46,47:0,0:0,0	126:2:0:0:9,10:115,117:0,0:0,0
3	44873745	.	G	T	.	PASS	NT=ref;QSS=27;QSS_NT=27;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||710|KIF15|protein_coding|CODING|ENST00000481166||1),INTRON(MODIFIER||||1023|KIF15|protein_coding|CODING|ENST00000425755|17|1),INTRON(MODIFIER||||1388|KIF15|protein_coding|CODING|ENST00000326047|26|1),INTRON(MODIFIER|||||KIF15|nonsense_mediated_decay|CODING|ENST00000438321|25|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	54:1:0:0:0,0:0,0:53,54:0,0	106:2:0:0:0,1:0,0:96,97:8,8
3	47179813	.	A	G	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1339|SETD2|protein_coding|CODING|ENST00000412450|1|1),INTRON(MODIFIER||||2564|SETD2|protein_coding|CODING|ENST00000409792|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	41:1:0:0:40,41:0,0:0,0:0,0	118:2:0:0:105,107:0,0:11,12:0,0
3	47568614	.	T	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:0:0:0:0,0:0,0:0,0:31,31	90:0:0:0:0,0:6,6:0,0:84,84
3	47568620	.	C	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:0:0:0:0,0:31,31:0,0:0,0	94:1:0:0:0,0:87,88:0,0:6,6
3	47598527	.	G	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||Metazoa_SRP|misc_RNA|NON_CODING|ENST00000460111||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:2:0:0:0,0:0,0:33,36:0,0	133:0:0:0:6,6:0,0:127,127:0,0
3	47725573	.	A	G	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1105|SMARCC1|protein_coding|CODING|ENST00000254480|14|1),INTRON(MODIFIER|||||SMARCC1|processed_transcript|CODING|ENST00000425518|14|1),INTRON(MODIFIER|||||SMARCC1|processed_transcript|CODING|ENST00000462198|4|1),INTRON(MODIFIER|||||SMARCC1|retained_intron|CODING|ENST00000485737|4|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:0:0:0:39,39:0,0:0,0:0,0	81:0:0:0:76,76:0,0:5,6:0,0
3	47877152	.	A	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=DOWNSTREAM(MODIFIER|||||DHX30|processed_transcript|CODING|ENST00000470959||1),INTRON(MODIFIER||||1155|DHX30|protein_coding|CODING|ENST00000446256|7|1),INTRON(MODIFIER||||1166|DHX30|protein_coding|CODING|ENST00000348968|7|1),INTRON(MODIFIER||||1194|DHX30|protein_coding|CODING|ENST00000445061|6|1),INTRON(MODIFIER||||1222|DHX30|protein_coding|CODING|ENST00000457607|3|1),INTRON(MODIFIER|||||DHX30|nonsense_mediated_decay|CODING|ENST00000395745|7|1),INTRON(MODIFIER|||||DHX30|nonsense_mediated_decay|CODING|ENST00000441384|7|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	47:2:0:0:45,46:0,0:0,1:0,0	109:8:0:0:95,101:1,1:5,6:0,1
3	48085835	.	C	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1135|MAP4|protein_coding|CODING|ENST00000395734|1|1),INTRON(MODIFIER||||1152|MAP4|protein_coding|CODING|ENST00000360240|1|1),INTRON(MODIFIER||||2297|MAP4|protein_coding|CODING|ENST00000426837|1|1),INTRON(MODIFIER||||811|MAP4|protein_coding|CODING|ENST00000383737|1|1),INTRON(MODIFIER||||99|MAP4|protein_coding|CODING|ENST00000439356|1|1),INTRON(MODIFIER|||||MAP4|processed_transcript|CODING|ENST00000468075|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:1:0:0:0,0:37,39:0,0:0,0	91:2:0:0:0,0:83,87:0,0:6,6
3	48085852	.	A	G	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1135|MAP4|protein_coding|CODING|ENST00000395734|1|1),INTRON(MODIFIER||||1152|MAP4|protein_coding|CODING|ENST00000360240|1|1),INTRON(MODIFIER||||2297|MAP4|protein_coding|CODING|ENST00000426837|1|1),INTRON(MODIFIER||||811|MAP4|protein_coding|CODING|ENST00000383737|1|1),INTRON(MODIFIER||||99|MAP4|protein_coding|CODING|ENST00000439356|1|1),INTRON(MODIFIER|||||MAP4|processed_transcript|CODING|ENST00000468075|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:1:0:0:38,40:1,1:0,0:0,0	93:1:0:0:83,86:1,1:8,8:0,0
3	49256126	.	T	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||203|CCDC36|protein_coding|CODING|ENST00000366429|2|1),INTRON(MODIFIER||||594|CCDC36|protein_coding|CODING|ENST00000296449|4|1),INTRON(MODIFIER||||594|CCDC36|protein_coding|CODING|ENST00000438782|2|1),INTRON(MODIFIER||||594|CCDC36|protein_coding|CODING|ENST00000452691|2|1),INTRON(MODIFIER|||||CCDC36|processed_transcript|CODING|ENST00000493870|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:0:0:0:0,0:0,0:0,0:35,36	112:0:0:0:5,5:0,0:0,0:107,108
3	49256255	.	T	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->AT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER||||203|CCDC36|protein_coding|CODING|ENST00000366429|2|1),INTRON(MODIFIER||||594|CCDC36|protein_coding|CODING|ENST00000296449|4|1),INTRON(MODIFIER||||594|CCDC36|protein_coding|CODING|ENST00000438782|2|1),INTRON(MODIFIER||||594|CCDC36|protein_coding|CODING|ENST00000452691|2|1),INTRON(MODIFIER|||||CCDC36|processed_transcript|CODING|ENST00000493870|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:1:0:0:0,0:0,0:0,1:37,37	98:0:0:0:4,4:0,0:0,0:94,95
3	50346146	.	A	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||435|HYAL1|protein_coding|CODING|ENST00000320295|2|1),UPSTREAM(MODIFIER||||68|HYAL1|protein_coding|CODING|ENST00000452672||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:1:0:0:31,33:0,0:0,0:0,0	81:5:0:0:69,73:0,1:7,9:0,0
3	51641727	.	C	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=DOWNSTREAM(MODIFIER|||||U6atac|snRNA|NON_CODING|ENST00000408088||1),INTRON(MODIFIER||||1467|RAD54L2|protein_coding|CODING|ENST00000409535|2|1),INTRON(MODIFIER|||||RAD54L2|retained_intron|CODING|ENST00000487093|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	47:1:0:0:0,0:46,49:0,0:0,0	103:3:0:0:0,0:96,102:0,0:4,4
3	55220361	.	A	T	.	PASS	NT=ref;QSS=23;QSS_NT=23;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-889D3.2|lincRNA|NON_CODING|ENST00000496829|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	45:0:0:0:45,46:0,0:0,0:0,0	103:1:0:0:92,93:0,0:0,0:10,10
3	56007930	.	A	C	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||957|ERC2|protein_coding|CODING|ENST00000288221|12|1),INTRON(MODIFIER|||||ERC2|nonsense_mediated_decay|CODING|ENST00000460849|12|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:0:0:0:38,38:0,0:0,0:0,0	104:1:0:0:91,91:12,12:0,1:0,0
3	56069941	.	A	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||957|ERC2|protein_coding|CODING|ENST00000288221|7|1),INTRON(MODIFIER|||||ERC2|nonsense_mediated_decay|CODING|ENST00000460849|7|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	28:0:0:0:28,28:0,0:0,0:0,0	114:1:0:0:104,105:9,9:0,0:0,0
3	56548756	.	A	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AC;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:2:0:0:33,37:0,1:0,0:0,0	131:3:0:0:120,124:8,12:0,0:0,0
3	57950368	.	C	T	.	PASS	NT=ref;QSS=26;QSS_NT=26;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	52:0:0:0:0,0:52,52:0,0:0,0	99:1:0:0:0,0:88,89:0,0:10,10
3	60845940	.	C	T	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=CC->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER||||147|FHIT|protein_coding|CODING|ENST00000468189|3|1),INTRON(MODIFIER||||147|FHIT|protein_coding|CODING|ENST00000476844|3|1),INTRON(MODIFIER||||147|FHIT|protein_coding|CODING|ENST00000492590|3|1),INTRON(MODIFIER||||77|FHIT|protein_coding|CODING|ENST00000488467|3|1),INTRON(MODIFIER|||||FHIT|retained_intron|CODING|ENST00000490952|4|1),UPSTREAM(MODIFIER|||||U3|snoRNA|NON_CODING|ENST00000390909||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	42:3:0:0:0,0:39,67:0,0:0,0	142:4:0:0:2,7:130,184:0,0:6,7
3	60871282	.	T	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||147|FHIT|protein_coding|CODING|ENST00000468189|3|1),INTRON(MODIFIER||||147|FHIT|protein_coding|CODING|ENST00000476844|3|1),INTRON(MODIFIER||||147|FHIT|protein_coding|CODING|ENST00000492590|3|1),INTRON(MODIFIER||||77|FHIT|protein_coding|CODING|ENST00000488467|3|1),INTRON(MODIFIER|||||FHIT|retained_intron|CODING|ENST00000490952|4|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:0:0:0:0,0:0,0:0,0:32,32	101:2:0:0:0,0:7,8:0,0:92,93
3	61918648	.	A	G	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1416|PTPRG|protein_coding|CODING|ENST00000295874|2|1),INTRON(MODIFIER||||1445|PTPRG|protein_coding|CODING|ENST00000474889|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:0:0:0:36,36:0,0:0,0:0,0	104:0:0:0:98,98:0,0:6,6:0,0
3	63184439	.	A	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=DOWNSTREAM(MODIFIER|||||RP11-601G18.1|processed_pseudogene|NON_CODING|ENST00000475112||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	51:4:0:0:47,77:0,0:0,2:0,0	147:17:0:0:123,241:1,1:6,21:0,0
3	63259939	.	C	G	.	PASS	NT=ref;QSS=24;QSS_NT=24;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||SYNPR|processed_transcript|CODING|ENST00000478456|3|1),UPSTREAM(MODIFIER||||285|SYNPR|protein_coding|CODING|ENST00000478300||1),UPSTREAM(MODIFIER|||||SYNPR|nonsense_mediated_decay|CODING|ENST00000450542||1),UPSTREAM(MODIFIER|||||SYNPR|nonsense_mediated_decay|CODING|ENST00000468110||1),UPSTREAM(MODIFIER|||||SYNPR|processed_transcript|CODING|ENST00000460142||1),UPSTREAM(MODIFIER|||||SYNPR|processed_transcript|CODING|ENST00000496889||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	47:0:0:0:0,0:47,47:0,0:0,0	129:0:0:0:0,0:121,121:8,8:0,0
3	63372774	.	G	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||285|SYNPR|protein_coding|CODING|ENST00000478300|2|1),INTRON(MODIFIER|||||SYNPR|nonsense_mediated_decay|CODING|ENST00000450542|2|1),INTRON(MODIFIER|||||SYNPR|nonsense_mediated_decay|CODING|ENST00000468110|2|1),INTRON(MODIFIER|||||SYNPR|processed_transcript|CODING|ENST00000460142|2|1),INTRON(MODIFIER|||||SYNPR|processed_transcript|CODING|ENST00000478456|3|1),INTRON(MODIFIER|||||SYNPR|processed_transcript|CODING|ENST00000493532|1|1),INTRON(MODIFIER|||||SYNPR|processed_transcript|CODING|ENST00000496889|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:0:0:0:0,0:0,0:38,38:0,0	103:1:0:0:0,0:4,4:98,99:0,0
3	63723531	rs202096655	G	C	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||AC136289.1|transcribed_unprocessed_pseudogene|NON_CODING|ENST00000430831||1),INTERGENIC(MODIFIER||||||||||1);RSPOS=63723531;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	43:0:0:0:0,0:0,0:43,48:0,0	102:0:0:0:0,0:12,13:90,100:0,0
3	63723568	rs200412076	A	C	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||AC136289.1|transcribed_unprocessed_pseudogene|NON_CODING|ENST00000430831||1),INTERGENIC(MODIFIER||||||||||1);RSPOS=63723568;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	43:0:0:0:43,49:0,0:0,0:0,0	97:0:0:0:87,97:10,11:0,0:0,0
3	64902177	.	C	T	.	PASS	NT=ref;QSS=26;QSS_NT=26;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||ADAMTS9-AS2|processed_transcript|NON_CODING|ENST00000474768|4|1),INTRON(MODIFIER|||||ADAMTS9-AS2|processed_transcript|NON_CODING|ENST00000481312|4|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	53:0:0:0:1,1:52,52:0,0:0,0	115:1:0:0:0,0:108,108:0,1:6,6
3	64934426	rs201425644	G	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||ADAMTS9-AS2|processed_transcript|NON_CODING|ENST00000474768|4|1),INTRON(MODIFIER|||||ADAMTS9-AS2|processed_transcript|NON_CODING|ENST00000481312|4|1);RSPOS=64934426;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000080005000002000100;WGT=1;VC=SNV;INT;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:1:0:0:0,0:0,0:33,34:0,0	84:2:2:0:8,8:0,0:74,76:0,0
3	67794707	.	T	G	.	PASS	NT=ref;QSS=25;QSS_NT=25;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-81N13.1|processed_transcript|NON_CODING|ENST00000464420|3|1),INTRON(MODIFIER|||||RP11-81N13.1|processed_transcript|NON_CODING|ENST00000482677|3|1),INTRON(MODIFIER|||||RP11-81N13.1|processed_transcript|NON_CODING|ENST00000496640|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	50:0:0:0:0,0:0,0:0,0:50,51	108:3:0:0:0,0:0,0:8,9:97,99
3	68011616	.	C	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:0:0:0:1,1:29,29:0,0:0,0	116:0:0:0:1,1:108,108:7,7:0,0
3	68450619	.	C	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||133|FAM19A1|protein_coding|CODING|ENST00000478136|2|1),INTRON(MODIFIER||||133|FAM19A1|protein_coding|CODING|ENST00000496687|1|1),INTRON(MODIFIER|||||FAM19A1|processed_transcript|CODING|ENST00000491017|4|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	27:0:0:0:0,0:27,27:0,0:0,0	99:0:0:0:0,0:89,89:10,10:0,0
3	69148296	.	T	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||188|ARL6IP5|protein_coding|CODING|ENST00000273258|1|1),INTRON(MODIFIER||||88|ARL6IP5|protein_coding|CODING|ENST00000478935|1|1),INTRON(MODIFIER|||||ARL6IP5|nonsense_mediated_decay|CODING|ENST00000484921|1|1),INTRON(MODIFIER|||||ARL6IP5|nonsense_mediated_decay|CODING|ENST00000485444|2|1),INTRON(MODIFIER|||||ARL6IP5|retained_intron|CODING|ENST00000470936|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	21:0:0:0:0,0:0,0:1,1:20,21	81:5:0:0:0,0:1,1:20,24:55,57
3	70128598	.	T	C	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:0:0:0:0,0:0,0:0,0:37,37	91:1:0:0:0,0:10,10:0,1:80,80
3	70368453	.	T	A	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:0:0:0:0,0:0,0:0,0:39,39	62:1:0:0:7,7:0,0:0,0:54,55
3	71013690	.	C	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||573|FOXP1|protein_coding|CODING|ENST00000497355|13|1),INTRON(MODIFIER||||601|FOXP1|protein_coding|CODING|ENST00000484350|15|1),INTRON(MODIFIER||||613|FOXP1|protein_coding|CODING|ENST00000468577|13|1),INTRON(MODIFIER||||676|FOXP1|protein_coding|CODING|ENST00000493089|20|1),INTRON(MODIFIER||||677|FOXP1|protein_coding|CODING|ENST00000318789|20|1),INTRON(MODIFIER||||677|FOXP1|protein_coding|CODING|ENST00000475937|19|1),INTRON(MODIFIER||||677|FOXP1|protein_coding|CODING|ENST00000498215|16|1),INTRON(MODIFIER||||679|FOXP1|protein_coding|CODING|ENST00000491238|15|1),INTRON(MODIFIER|||||FOXP1|nonsense_mediated_decay|CODING|ENST00000327590|21|1),INTRON(MODIFIER|||||FOXP1|processed_transcript|CODING|ENST00000460805|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:1:0:0:0,0:29,30:0,0:0,0	121:1:0:0:0,0:105,106:0,0:15,15
3	71571554	.	C	A	.	PASS	NT=ref;QSS=26;QSS_NT=26;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||114|FOXP1|protein_coding|CODING|ENST00000318779|2|1),INTRON(MODIFIER||||676|FOXP1|protein_coding|CODING|ENST00000493089|2|1),INTRON(MODIFIER||||677|FOXP1|protein_coding|CODING|ENST00000318789|2|1),INTRON(MODIFIER||||677|FOXP1|protein_coding|CODING|ENST00000475937|1|1),INTRON(MODIFIER|||||FOXP1|processed_transcript|CODING|ENST00000471386|1|1),INTRON(MODIFIER|||||FOXP1|processed_transcript|CODING|ENST00000498154|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	52:1:0:0:0,0:51,52:0,0:0,0	101:1:0:0:8,8:92,93:0,0:0,0
3	71636479	.	C	G	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER||||114|FOXP1|protein_coding|CODING|ENST00000318779||1),UPSTREAM(MODIFIER||||676|FOXP1|protein_coding|CODING|ENST00000493089||1),UPSTREAM(MODIFIER||||677|FOXP1|protein_coding|CODING|ENST00000318789||1),UPSTREAM(MODIFIER|||||FOXP1|processed_transcript|CODING|ENST00000471386||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:0:0:0:0,0:40,42:0,0:0,0	104:1:0:0:0,0:94,94:9,9:0,0
3	72144807	.	C	A	.	PASS	NT=ref;QSS=23;QSS_NT=23;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||RP11-398A8.3|processed_transcript|NON_CODING|ENST00000488545||1),INTRON(MODIFIER|||||RP11-398A8.3|processed_transcript|NON_CODING|ENST00000462492|2|1),INTRON(MODIFIER|||||RP11-398A8.3|processed_transcript|NON_CODING|ENST00000464271|2|1),INTRON(MODIFIER|||||RP11-398A8.3|processed_transcript|NON_CODING|ENST00000468646|2|1),INTRON(MODIFIER|||||RP11-398A8.3|processed_transcript|NON_CODING|ENST00000469218|2|1),INTRON(MODIFIER|||||RP11-398A8.3|processed_transcript|NON_CODING|ENST00000470712|1|1),INTRON(MODIFIER|||||RP11-398A8.3|processed_transcript|NON_CODING|ENST00000481148|2|1),INTRON(MODIFIER|||||RP11-398A8.3|retained_intron|NON_CODING|ENST00000498432|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	46:0:0:0:0,0:46,46:0,0:0,0	111:1:0:0:8,8:102,103:0,0:0,0
3	73128750	.	T	C	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||snoU13|snoRNA|NON_CODING|ENST00000458782||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	46:3:0:0:0,0:0,0:0,0:43,47	109:0:0:0:0,0:7,7:0,0:102,104
3	74173015	.	T	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:0:0:0:0,0:0,0:0,0:29,29	107:0:0:0:0,0:6,6:0,0:101,101
3	74781762	.	C	A	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:0:0:0:0,0:34,35:1,1:0,0	112:1:0:0:14,15:97,98:0,0:0,0
3	74985322	.	A	C	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	43:1:0:0:42,43:0,0:0,0:0,0	97:0:0:0:90,90:7,7:0,0:0,0
3	75363546	.	A	T	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	50:0:0:0:50,50:0,0:0,0:0,0	89:0:0:0:85,85:0,0:0,0:4,4
3	75517942	.	C	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-803B1.7|unprocessed_pseudogene|NON_CODING|ENST00000462675|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:0:0:0:0,0:31,31:0,0:0,0	106:3:0:0:0,1:93,96:0,0:10,10
3	75680137	.	G	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=DOWNSTREAM(MODIFIER|||||MIR1324|miRNA|NON_CODING|ENST00000408868||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	61:2:0:0:0,1:0,0:59,63:0,0	113:3:0:0:11,13:0,0:99,106:0,0
3	75828093	.	G	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->GT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER||||109|ZNF717|protein_coding|CODING|ENST00000468296|2|1),INTRON(MODIFIER||||114|ZNF717|protein_coding|CODING|ENST00000477374|2|1),INTRON(MODIFIER||||59|ZNF717|protein_coding|CODING|ENST00000471541|2|1),INTRON(MODIFIER||||864|ZNF717|protein_coding|CODING|ENST00000478296|1|1),INTRON(MODIFIER||||907|ZNF717|protein_coding|CODING|ENST00000400845|2|1),INTRON(MODIFIER||||914|ZNF717|protein_coding|CODING|ENST00000422325|2|1),INTRON(MODIFIER|||||ZNF717|processed_transcript|CODING|ENST00000491507|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	52:1:0:0:0,0:2,3:48,48:1,1	87:6:0:0:0,1:2,3:74,80:5,5
3	75837209	rs76283865	T	A	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER||||109|ZNF717|protein_coding|CODING|ENST00000468296||1),UPSTREAM(MODIFIER||||114|ZNF717|protein_coding|CODING|ENST00000477374||1),UPSTREAM(MODIFIER||||59|ZNF717|protein_coding|CODING|ENST00000471541||1),UPSTREAM(MODIFIER||||864|ZNF717|protein_coding|CODING|ENST00000478296||1),UPSTREAM(MODIFIER||||907|ZNF717|protein_coding|CODING|ENST00000400845||1),UPSTREAM(MODIFIER||||914|ZNF717|protein_coding|CODING|ENST00000422325||1),UPSTREAM(MODIFIER|||||ZNF717|processed_transcript|CODING|ENST00000491507||1);RSPOS=75837209;dbSNPBuildID=131;SSR=0;SAO=0;VP=050100000005040102000100;WGT=1;VC=SNV;SLO;ASP;VLD;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	49:9:0:0:0,2:0,0:0,1:40,80	138:16:0:0:8,9:0,0:0,0:114,177
3	75860467	.	G	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->GT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:0:0:0:0,0:0,0:37,37:0,1	91:1:0:0:0,0:0,0:81,82:9,13
3	75860476	rs62266837	A	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=75860476;dbSNPBuildID=129;SSR=0;SAO=0;VP=050100000005000102000100;WGT=1;VC=SNV;SLO;ASP;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:0:0:0:39,39:1,3:0,0:0,0	94:1:0:0:80,81:13,20:0,0:0,0
3	75889829	rs191807014	T	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=75889829;dbSNPBuildID=135;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:0:0:0:0,0:0,1:0,0:32,32	124:0:0:0:0,0:6,20:1,1:117,117
3	75903139	rs200190057	C	G	.	PASS	NT=ref;QSS=24;QSS_NT=24;SGT=CC->CG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=75903139;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	58:1:0:0:0,0:57,61:0,2:0,1	155:1:0:0:0,0:145,161:9,14:0,0
3	75994414	.	A	G	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1394|ROBO2|protein_coding|CODING|ENST00000487694|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	42:0:0:0:42,46:0,0:0,0:0,0	110:3:0:0:101,106:0,0:6,11:0,0
3	75995767	rs111868693	A	G	.	PASS	NT=ref;QSS=23;QSS_NT=23;SGT=AA->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER||||1394|ROBO2|protein_coding|CODING|ENST00000487694|2|1);RSPOS=75995767;dbSNPBuildID=132;SSR=0;SAO=0;VP=050100080001000102000100;GENEINFO=ROBO2:6092;WGT=1;VC=SNV;SLO;INT;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	91:3:0:0:88,94:0,0:0,2:0,0	271:4:0:0:254,271:0,1:13,16:0,0
3	76069112	.	T	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER||||1394|ROBO2|protein_coding|CODING|ENST00000487694|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	44:0:0:0:0,0:0,0:0,0:44,44	113:2:0:0:0,0:7,7:0,0:104,106
3	76085902	.	A	G	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1394|ROBO2|protein_coding|CODING|ENST00000487694|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	41:0:0:0:41,41:0,0:0,0:0,0	100:4:0:0:87,89:1,2:8,10:0,0
3	76722224	.	C	T	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1394|ROBO2|protein_coding|CODING|ENST00000487694|2|1),INTRON(MODIFIER|||||ROBO2|processed_transcript|CODING|ENST00000475034|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	43:0:0:0:0,0:43,43:0,0:0,0	93:0:0:0:0,0:85,85:0,0:8,8
3	77011588	.	G	A	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1394|ROBO2|protein_coding|CODING|ENST00000487694|2|1),INTRON(MODIFIER|||||ROBO2|processed_transcript|CODING|ENST00000475034|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:0:0:0:0,0:0,0:37,37:0,0	88:1:0:0:9,9:0,0:78,79:0,0
3	77358525	.	A	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1378|ROBO2|protein_coding|CODING|ENST00000461745|2|1),INTRON(MODIFIER||||1394|ROBO2|protein_coding|CODING|ENST00000487694|3|1),INTRON(MODIFIER||||1439|ROBO2|protein_coding|CODING|ENST00000332191|2|1),INTRON(MODIFIER|||||ROBO2|nonsense_mediated_decay|CODING|ENST00000473767|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:0:0:0:34,34:0,0:0,0:0,0	100:0:0:0:89,89:0,0:0,0:11,11
3	77574090	.	T	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1378|ROBO2|protein_coding|CODING|ENST00000461745|6|1),INTRON(MODIFIER||||1394|ROBO2|protein_coding|CODING|ENST00000487694|7|1),INTRON(MODIFIER||||1439|ROBO2|protein_coding|CODING|ENST00000332191|6|1),INTRON(MODIFIER|||||ROBO2|nonsense_mediated_decay|CODING|ENST00000473767|6|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:0:0:0:0,0:0,0:0,0:33,33	119:0:0:0:0,0:10,10:0,0:109,109
3	77578669	.	G	A	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1378|ROBO2|protein_coding|CODING|ENST00000461745|6|1),INTRON(MODIFIER||||1394|ROBO2|protein_coding|CODING|ENST00000487694|7|1),INTRON(MODIFIER||||1439|ROBO2|protein_coding|CODING|ENST00000332191|6|1),INTRON(MODIFIER|||||ROBO2|nonsense_mediated_decay|CODING|ENST00000473767|6|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:0:0:0:0,0:0,0:39,40:0,0	102:0:0:0:9,9:0,0:93,93:0,0
3	77838784	.	C	G	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:1:0:0:0,0:39,40:0,0:0,0	107:2:0:0:1,1:95,97:8,8:1,1
3	77914871	.	A	G	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	43:0:0:0:43,44:0,0:0,0:0,0	118:2:0:0:106,108:0,0:10,10:0,0
3	78038801	.	C	T	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:0:0:0:0,0:40,40:0,0:0,0	131:0:0:0:0,0:125,125:0,0:6,6
3	79093687	.	A	G	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1651|ROBO1|protein_coding|CODING|ENST00000464233|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:0:0:0:40,40:0,0:0,0:0,0	102:0:0:0:93,93:0,0:9,9:0,0
3	79107527	.	G	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1651|ROBO1|protein_coding|CODING|ENST00000464233|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:0:0:0:0,0:0,0:33,33:0,0	103:1:0:0:0,0:0,0:95,96:7,7
3	79448727	.	C	T	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1651|ROBO1|protein_coding|CODING|ENST00000464233|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:0:0:0:0,0:38,38:0,0:0,0	105:2:0:0:0,0:92,94:0,0:11,11
3	79595389	.	T	C	.	PASS	NT=ref;QSS=24;QSS_NT=24;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1651|ROBO1|protein_coding|CODING|ENST00000464233|2|1),INTRON(MODIFIER|||||ROBO1|nonsense_mediated_decay|CODING|ENST00000492990|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	46:0:0:0:0,0:0,0:0,0:46,46	122:0:0:0:0,0:14,14:0,0:108,108
3	79595418	.	G	C	.	PASS	NT=ref;QSS=23;QSS_NT=23;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1651|ROBO1|protein_coding|CODING|ENST00000464233|2|1),INTRON(MODIFIER|||||ROBO1|nonsense_mediated_decay|CODING|ENST00000492990|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	44:0:0:0:0,0:0,0:44,44:0,0	103:0:0:0:0,0:12,12:91,91:0,0
3	79697380	.	T	C	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1651|ROBO1|protein_coding|CODING|ENST00000464233|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:0:0:0:0,0:0,0:0,0:37,37	120:2:0:0:0,0:9,9:0,0:109,111
3	80745160	.	T	A	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:0:0:0:0,0:0,0:0,0:38,39	107:1:0:0:14,14:0,0:0,0:92,93
3	80861096	.	A	G	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:0:0:0:32,32:0,0:0,0:0,0	112:1:0:0:105,105:1,1:5,6:0,0
3	82561727	.	C	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:1:0:0:0,0:33,34:0,0:0,0	98:3:0:0:0,0:88,89:0,0:7,8
3	83123578	.	G	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:0:0:0:0,0:0,0:30,31:0,0	90:2:0:0:0,1:0,0:84,85:4,4
3	83239519	.	G	A	.	PASS	NT=ref;QSS=23;QSS_NT=23;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	47:1:0:0:0,0:0,0:46,47:0,0	92:0:0:0:8,8:0,0:84,84:0,0
3	83301578	.	G	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	28:1:0:0:0,0:0,0:27,28:0,0	107:0:0:0:0,0:0,0:99,100:8,8
3	83725225	.	C	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:0:0:0:0,0:28,28:1,1:0,0	90:0:0:0:0,0:81,81:0,0:9,9
3	84034169	.	A	T	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:0:0:0:36,36:0,0:0,0:0,0	96:0:0:0:86,86:0,0:0,0:10,10
3	84525161	.	C	T	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	43:1:0:0:0,0:42,43:0,0:0,0	103:1:0:0:1,1:95,96:0,0:6,6
3	85641497	.	C	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||404|CADM2|protein_coding|CODING|ENST00000383699|1|1),INTRON(MODIFIER||||435|CADM2|protein_coding|CODING|ENST00000407528|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	27:0:0:0:0,0:27,28:0,0:0,0	112:0:0:0:1,1:101,101:10,10:0,0
3	85858906	.	C	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||404|CADM2|protein_coding|CODING|ENST00000383699|3|1),INTRON(MODIFIER||||435|CADM2|protein_coding|CODING|ENST00000407528|2|1),INTRON(MODIFIER||||437|CADM2|protein_coding|CODING|ENST00000405615|2|1),INTRON(MODIFIER|||||CADM2-AS2|antisense|NON_CODING|ENST00000467225|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:1:0:0:0,0:29,57:0,0:0,0	87:3:0:0:8,8:75,149:1,1:0,0
3	86412894	.	A	G	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||7SK|misc_RNA|NON_CODING|ENST00000411002||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:0:0:0:34,34:0,0:0,0:0,0	82:0:0:0:76,76:0,0:5,5:1,1
3	86921485	.	G	A	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	43:0:0:0:0,0:0,0:43,43:0,0	102:0:0:0:5,5:0,0:97,97:0,0
3	87082745	.	C	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:0:0:0:0,0:31,31:0,0:0,0	115:0:0:0:5,5:110,110:0,0:0,0
3	87553917	.	G	T	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:0:0:0:0,0:0,0:39,39:0,0	104:1:0:0:0,0:0,0:94,96:9,9
3	87818338	.	A	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-451B8.1|lincRNA|NON_CODING|ENST00000462792|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:0:0:0:29,29:1,1:0,0:0,0	89:3:0:0:75,77:0,0:0,0:11,12
3	89326363	.	G	T	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||539|EPHA3|protein_coding|CODING|ENST00000452448|3|1),INTRON(MODIFIER||||918|EPHA3|protein_coding|CODING|ENST00000494014|3|1),INTRON(MODIFIER||||983|EPHA3|protein_coding|CODING|ENST00000336596|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	44:0:0:0:0,0:0,0:44,44:0,0	97:0:0:0:0,0:0,0:89,89:8,8
3	89746428	.	C	A	.	PASS	NT=ref;QSS=23;QSS_NT=23;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	47:1:0:0:0,0:46,47:0,0:0,0	96:1:0:0:8,8:87,88:0,0:0,0
3	90072043	.	C	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:1:0:0:0,0:32,33:0,0:0,0	115:0:0:0:0,0:105,105:0,0:10,10
3	90321585	.	G	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	49:7:0:0:0,0:0,2:42,55:0,0	126:12:0:0:0,0:6,13:108,125:0,0
3	90329942	.	A	T	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:0:0:0:40,40:0,0:0,0:0,0	100:1:0:0:91,92:0,0:0,0:8,8
3	90353907	.	C	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:0:0:0:0,0:31,33:0,0:0,0	125:8:0:0:2,2:107,131:0,0:8,11
3	90467409	rs182308024	G	C	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=90467409;dbSNPBuildID=135;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	42:0:0:0:0,0:0,2:41,68:1,3	139:2:0:0:0,1:9,15:127,213:1,15
3	90479387	.	G	C	.	PASS	NT=ref;QSS=29;QSS_NT=29;SGT=GG->CG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	96:3:0:0:0,0:0,2:93,155:0,1	217:9:0:0:0,0:7,12:201,337:0,0
3	90479392	.	T	A	.	PASS	NT=ref;QSS=28;QSS_NT=28;SGT=TT->AT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	97:16:0:0:0,2:0,0:0,1:81,153	211:55:0:0:8,13:0,0:0,3:148,318
3	90486987	.	G	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->GT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	66:5:1:0:0,0:1,3:60,98:0,4	169:23:1:0:1,1:2,3:136,266:7,17
3	90489932	.	C	T	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=CC->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	59:12:0:0:0,0:47,78:0,2:0,2	151:33:0:0:0,4:111,219:0,0:7,9
3	90498139	.	C	A	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	46:3:0:0:0,1:43,68:0,0:0,0	148:22:0:0:7,9:119,202:0,0:0,0
3	93725163	.	T	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||ARL13B|nonsense_mediated_decay|CODING|ENST00000475206||1),DOWNSTREAM(MODIFIER|||||ARL13B|processed_transcript|CODING|ENST00000492165||1),INTRON(MODIFIER||||149|ARL13B|protein_coding|CODING|ENST00000539730|2|1),INTRON(MODIFIER||||321|ARL13B|protein_coding|CODING|ENST00000303097|1|1),INTRON(MODIFIER||||325|ARL13B|protein_coding|CODING|ENST00000535334|2|1),INTRON(MODIFIER||||428|ARL13B|protein_coding|CODING|ENST00000394222|3|1),INTRON(MODIFIER||||428|ARL13B|protein_coding|CODING|ENST00000471138|3|1),INTRON(MODIFIER|||||ARL13B|nonsense_mediated_decay|CODING|ENST00000335438|4|1),INTRON(MODIFIER|||||ARL13B|nonsense_mediated_decay|CODING|ENST00000460371|2|1),INTRON(MODIFIER|||||ARL13B|processed_transcript|CODING|ENST00000486562|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:1:0:0:0,0:0,0:0,0:33,34	98:0:0:0:0,0:0,0:4,4:94,95
3	94659384	.	G	T	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-118N24.3|lincRNA|NON_CODING|ENST00000462219|1|1),INTRON(MODIFIER|||||RP11-118N24.3|lincRNA|NON_CODING|ENST00000463200|1|1),INTRON(MODIFIER|||||RP11-118N24.3|lincRNA|NON_CODING|ENST00000466089|1|1),INTRON(MODIFIER|||||RP11-118N24.3|lincRNA|NON_CODING|ENST00000470465|1|1),UPSTREAM(MODIFIER|||||RP11-118N24.2|processed_pseudogene|NON_CODING|ENST00000489238||1),UPSTREAM(MODIFIER|||||WDR82P1|processed_pseudogene|NON_CODING|ENST00000439836||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:0:0:0:0,0:0,0:36,36:0,0	112:0:0:0:0,0:0,0:106,106:6,6
3	94784498	rs201695141	T	C	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=TT->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER|||||RP11-118N24.3|lincRNA|NON_CODING|ENST00000462219|1|1),INTRON(MODIFIER|||||RP11-118N24.3|lincRNA|NON_CODING|ENST00000470465|1|1);RSPOS=94784498;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	57:0:0:0:0,0:0,2:0,0:57,57	121:2:0:0:0,0:9,12:0,1:110,112
3	94784516	.	C	A	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=CC->AC;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER|||||RP11-118N24.3|lincRNA|NON_CODING|ENST00000462219|1|1),INTRON(MODIFIER|||||RP11-118N24.3|lincRNA|NON_CODING|ENST00000470465|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	54:0:0:0:0,2:54,54:0,0:0,0	122:3:0:0:8,11:111,114:0,0:0,0
3	95121218	rs147091966	C	T	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=95121218;dbSNPBuildID=134;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:3:0:0:0,0:35,38:0,0:0,0	83:3:2:0:0,0:69,72:0,0:11,11
3	95377750	.	A	G	.	PASS	NT=ref;QSS=24;QSS_NT=24;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-219E24.1|processed_transcript|NON_CODING|ENST00000494840|4|1),UPSTREAM(MODIFIER|||||RP11-219E24.1|transcribed_processed_pseudogene|NON_CODING|ENST00000489784||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	47:0:0:0:47,47:0,0:0,0:0,0	95:0:0:0:85,85:1,1:9,9:0,0
3	95460870	.	G	A	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:1:0:0:0,0:0,0:37,38:0,0	98:1:0:0:8,8:0,0:89,90:0,0
3	95460871	.	G	T	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:1:0:0:0,0:0,0:36,37:0,0	98:1:0:0:0,0:0,0:90,91:7,7
3	96063157	.	T	G	.	PASS	NT=ref;QSS=24;QSS_NT=24;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	47:0:0:0:0,0:0,0:0,0:47,47	110:1:0:0:0,0:0,0:9,9:100,101
3	96162041	.	A	G	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:0:0:0:37,37:0,0:0,0:0,0	80:1:0:0:73,74:0,0:6,6:0,0
3	96334716	.	G	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||RPL18AP8|processed_pseudogene|NON_CODING|ENST00000486071||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:0:0:0:0,0:0,0:33,33:0,0	107:1:0:0:0,0:0,0:98,100:8,8
3	97184247	.	C	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1130|EPHA6|protein_coding|CODING|ENST00000389672|7|1),INTRON(MODIFIER||||241|EPHA6|protein_coding|CODING|ENST00000442602|1|1),INTRON(MODIFIER||||334|EPHA6|protein_coding|CODING|ENST00000502694|3|1),INTRON(MODIFIER||||398|EPHA6|protein_coding|CODING|ENST00000514100|3|1),INTRON(MODIFIER|||||EPHA6|nonsense_mediated_decay|CODING|ENST00000477384|3|1),INTRON(MODIFIER|||||EPHA6|nonsense_mediated_decay|CODING|ENST00000503760|3|1),INTRON(MODIFIER|||||EPHA6|nonsense_mediated_decay|CODING|ENST00000508345|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	44:1:0:0:0,0:43,44:0,0:0,0	107:0:0:0:4,4:103,103:0,0:0,0
3	101790680	.	C	A	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:0:0:0:0,0:40,40:0,0:0,0	96:2:0:0:9,9:85,87:0,0:0,0
3	102905548	.	G	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:0:0:0:0,0:0,0:32,32:0,0	121:0:0:0:0,0:0,0:111,111:10,10
3	104294988	.	C	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:0:0:0:0,0:35,35:0,0:0,0	110:4:0:0:0,0:97,101:0,0:9,9
3	104802771	.	T	G	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:0:0:0:0,0:0,0:0,0:35,35	89:2:0:0:0,0:0,0:6,7:81,82
3	105301787	.	C	T	.	PASS	NT=ref;QSS=23;QSS_NT=23;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	45:0:0:0:0,0:45,45:0,0:0,0	102:1:0:0:0,0:96,97:0,0:5,5
3	105342618	.	G	A	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:2:0:0:0,0:0,0:34,36:0,0	141:11:0:0:13,23:0,0:116,118:1,1
3	106747495	.	G	T	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-280F2.2|processed_transcript|NON_CODING|ENST00000484698|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:0:0:0:0,0:0,0:36,36:0,0	97:2:0:0:0,1:0,0:89,90:6,6
3	108954104	.	C	T	.	PASS	NT=ref;QSS=23;QSS_NT=23;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	46:0:0:0:0,0:46,46:0,0:0,0	98:0:0:0:0,0:91,91:0,0:7,7
3	109974220	.	C	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:1:0:0:2,2:37,38:0,0:0,0	119:3:0:0:1,1:109,112:0,0:6,7
3	110992686	.	T	G	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||31|PVRL3|protein_coding|CODING|ENST00000485506|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:2:0:0:0,0:0,0:0,0:34,36	113:1:0:0:0,0:0,0:8,8:104,105
3	113196708	.	C	G	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||855|SPICE1|protein_coding|CODING|ENST00000295872|7|1),INTRON(MODIFIER|||||SPICE1|retained_intron|CODING|ENST00000496105|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	42:2:0:0:0,1:39,40:0,0:1,1	100:3:0:0:0,1:91,93:6,8:0,0
3	114446874	.	A	G	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||668|ZBTB20|protein_coding|CODING|ENST00000357258|4|1),INTRON(MODIFIER||||668|ZBTB20|protein_coding|CODING|ENST00000462705|5|1),INTRON(MODIFIER||||668|ZBTB20|protein_coding|CODING|ENST00000464560|1|1),INTRON(MODIFIER||||668|ZBTB20|protein_coding|CODING|ENST00000471418|1|1),INTRON(MODIFIER|||||ZBTB20|processed_transcript|CODING|ENST00000463890|5|1),INTRON(MODIFIER|||||ZBTB20|processed_transcript|CODING|ENST00000479879|2|1),INTRON(MODIFIER|||||ZBTB20|processed_transcript|CODING|ENST00000480832|2|1),INTRON(MODIFIER|||||ZBTB20|processed_transcript|CODING|ENST00000488663|4|1),INTRON(MODIFIER|||||ZBTB20|processed_transcript|CODING|ENST00000491500|3|1),INTRON(MODIFIER|||||ZBTB20|processed_transcript|CODING|ENST00000492665|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:0:0:0:33,33:0,0:0,0:0,0	103:0:0:0:97,97:0,0:6,6:0,0
3	115832267	.	A	T	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||204|LSAMP|protein_coding|CODING|ENST00000474851|3|1),INTRON(MODIFIER||||338|LSAMP|protein_coding|CODING|ENST00000490035|1|1),INTRON(MODIFIER||||345|LSAMP|protein_coding|CODING|ENST00000333617|1|1),INTRON(MODIFIER||||358|LSAMP|protein_coding|CODING|ENST00000539563|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:1:0:0:35,38:0,0:0,0:0,0	57:2:0:0:50,54:0,0:0,0:5,5
3	116174696	.	G	A	.	PASS	NT=ref;QSS=26;QSS_NT=26;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||204|LSAMP|protein_coding|CODING|ENST00000474851|2|1),INTRON(MODIFIER||||358|LSAMP|protein_coding|CODING|ENST00000539563|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	53:1:0:0:0,0:0,0:52,52:0,0	99:0:0:0:7,8:0,0:92,92:0,0
3	116324607	.	C	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||204|LSAMP|protein_coding|CODING|ENST00000474851|2|1),INTRON(MODIFIER||||358|LSAMP|protein_coding|CODING|ENST00000539563|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:1:0:0:0,0:33,34:0,0:0,0	90:1:0:0:6,6:83,85:0,0:0,0
3	116386039	.	T	A	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||204|LSAMP|protein_coding|CODING|ENST00000474851|2|1),INTRON(MODIFIER||||358|LSAMP|protein_coding|CODING|ENST00000539563|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:0:0:0:0,0:0,0:0,0:35,35	92:1:0:0:12,12:0,0:0,0:79,80
3	116504394	.	C	T	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||204|LSAMP|protein_coding|CODING|ENST00000474851|2|1),INTRON(MODIFIER||||358|LSAMP|protein_coding|CODING|ENST00000539563|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:1:0:0:0,0:38,40:0,0:0,0	88:0:0:0:0,0:81,81:0,0:7,7
3	116571800	.	C	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||204|LSAMP|protein_coding|CODING|ENST00000474851|2|1),INTRON(MODIFIER||||358|LSAMP|protein_coding|CODING|ENST00000539563|1|1),UPSTREAM(MODIFIER|||||MIR4447|miRNA|NON_CODING|ENST00000580126||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:1:0:0:0,0:31,32:0,0:0,0	94:2:0:0:11,12:80,82:1,1:0,0
3	117974129	.	A	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-384F7.1|lincRNA|NON_CODING|ENST00000482142|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:0:0:0:31,32:0,0:0,0:0,0	104:1:0:0:96,96:1,1:0,0:6,8
3	119710810	.	C	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||420|GSK3B|protein_coding|CODING|ENST00000264235|2|1),INTRON(MODIFIER||||433|GSK3B|protein_coding|CODING|ENST00000316626|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:0:0:0:0,0:32,32:0,0:0,0	112:2:0:0:0,0:102,104:0,0:8,11
3	121277531	.	A	G	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:1:0:0:34,35:0,1:0,0:0,0	88:4:0:0:77,85:2,2:5,5:0,0
3	122171419	.	G	A	.	PASS	NT=ref;QSS=24;QSS_NT=24;SGT=GG->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=DOWNSTREAM(MODIFIER||||173|KPNA1|protein_coding|CODING|ENST00000493510||1),INTRON(MODIFIER||||168|KPNA1|protein_coding|CODING|ENST00000476916|5|1),INTRON(MODIFIER||||213|KPNA1|protein_coding|CODING|ENST00000482287|6|1),INTRON(MODIFIER||||327|KPNA1|protein_coding|CODING|ENST00000465882|6|1),INTRON(MODIFIER||||538|KPNA1|protein_coding|CODING|ENST00000344337|6|1),INTRON(MODIFIER|||||KPNA1|nonsense_mediated_decay|CODING|ENST00000485027|6|1),INTRON(MODIFIER|||||KPNA1|nonsense_mediated_decay|CODING|ENST00000494339|7|1),INTRON(MODIFIER|||||KPNA1|processed_transcript|CODING|ENST00000464940|4|1),INTRON(MODIFIER|||||KPNA1|processed_transcript|CODING|ENST00000466923|4|1),INTRON(MODIFIER|||||KPNA1|processed_transcript|CODING|ENST00000470904|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	23:0:0:0:0,0:1,1:22,28:0,0	41:1:0:0:12,12:0,0:28,42:0,0
3	122262038	.	A	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER||||399|PARP9|protein_coding|CODING|ENST00000492382|5|1),INTRON(MODIFIER||||710|PARP9|protein_coding|CODING|ENST00000462315|7|1),INTRON(MODIFIER||||819|PARP9|protein_coding|CODING|ENST00000471785|7|1),INTRON(MODIFIER||||819|PARP9|protein_coding|CODING|ENST00000477522|7|1),INTRON(MODIFIER||||854|PARP9|protein_coding|CODING|ENST00000360356|7|1),INTRON(MODIFIER|||||PARP9|retained_intron|CODING|ENST00000489652|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	42:0:0:0:42,42:0,0:0,1:0,0	109:1:0:0:100,104:0,0:8,8:0,0
3	122262040	.	G	A	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||399|PARP9|protein_coding|CODING|ENST00000492382|5|1),INTRON(MODIFIER||||710|PARP9|protein_coding|CODING|ENST00000462315|7|1),INTRON(MODIFIER||||819|PARP9|protein_coding|CODING|ENST00000471785|7|1),INTRON(MODIFIER||||819|PARP9|protein_coding|CODING|ENST00000477522|7|1),INTRON(MODIFIER||||854|PARP9|protein_coding|CODING|ENST00000360356|7|1),INTRON(MODIFIER|||||PARP9|retained_intron|CODING|ENST00000489652|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	42:0:0:0:0,0:0,0:42,43:0,0	107:1:0:0:8,9:0,0:98,101:0,0
3	122262047	.	C	G	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||399|PARP9|protein_coding|CODING|ENST00000492382|5|1),INTRON(MODIFIER||||710|PARP9|protein_coding|CODING|ENST00000462315|7|1),INTRON(MODIFIER||||819|PARP9|protein_coding|CODING|ENST00000471785|7|1),INTRON(MODIFIER||||819|PARP9|protein_coding|CODING|ENST00000477522|7|1),INTRON(MODIFIER||||854|PARP9|protein_coding|CODING|ENST00000360356|7|1),INTRON(MODIFIER|||||PARP9|retained_intron|CODING|ENST00000489652|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	42:0:0:0:0,0:42,43:0,0:0,0	106:1:0:0:0,0:97,101:8,8:0,0
3	122568238	.	C	T	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||478|DIRC2|protein_coding|CODING|ENST00000261038|5|1),INTRON(MODIFIER|||||DIRC2|nonsense_mediated_decay|CODING|ENST00000477647|4|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:0:0:0:0,0:39,39:0,0:0,0	108:0:0:0:0,0:100,100:0,0:8,8
3	123127482	.	G	A	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1261|ADCY5|protein_coding|CODING|ENST00000462833|1|1),INTRON(MODIFIER||||89|ADCY5|protein_coding|CODING|ENST00000483566|1|1),INTRON(MODIFIER||||911|ADCY5|protein_coding|CODING|ENST00000309879|1|1),INTRON(MODIFIER||||919|ADCY5|protein_coding|CODING|ENST00000491190|1|1),INTRON(MODIFIER|||||ADCY5|processed_transcript|CODING|ENST00000470367|1|1),UPSTREAM(MODIFIER||||491|ADCY5|protein_coding|CODING|ENST00000466617||1),UPSTREAM(MODIFIER|||||ADCY5|nonsense_mediated_decay|CODING|ENST00000476455||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	41:3:0:0:0,0:0,0:38,42:0,0	73:3:0:0:6,10:0,0:64,66:0,0
3	124071531	rs35426228	T	G	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1654|KALRN|protein_coding|CODING|ENST00000460856|10|1),INTRON(MODIFIER||||1663|KALRN|protein_coding|CODING|ENST00000240874|10|1),INTRON(MODIFIER||||215|KALRN|protein_coding|CODING|ENST00000439170|2|1),INTRON(MODIFIER||||2986|KALRN|protein_coding|CODING|ENST00000360013|10|1);RSPOS=124071531;GMAF=0.0018;dbSNPBuildID=126;SSR=0;SAO=0;VP=050100080001040116000100;GENEINFO=KALRN:8997;WGT=1;VC=SNV;SLO;INT;VLD;GNO;KGPhase1;KGPROD;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:0:0:0:0,0:0,0:0,0:40,40	113:2:0:0:0,1:0,0:7,7:104,105
3	125436137	rs200541150	A	C	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||GS1-388B5.4|unprocessed_pseudogene|NON_CODING|ENST00000463158||1),INTERGENIC(MODIFIER||||||||||1);RSPOS=125436137;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	44:1:0:0:43,44:0,0:0,0:0,0	105:0:0:0:96,96:9,28:0,0:0,0
3	125448871	.	T	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||GS1-388B5.5|unprocessed_pseudogene|NON_CODING|ENST00000508347||1),INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||GS1-388B5.6|unprocessed_pseudogene|NON_CODING|ENST00000418098||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	48:1:0:0:0,0:0,0:0,0:47,50	97:2:0:0:0,0:0,0:9,16:86,93
3	125450218	.	C	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||AF186996.1|miRNA|NON_CODING|ENST00000583219||1),UPSTREAM(MODIFIER|||||GS1-388B5.6|unprocessed_pseudogene|NON_CODING|ENST00000418098||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:1:0:0:0,0:33,34:0,0:0,0	99:1:0:0:0,0:93,93:0,0:5,8
3	125457068	.	C	T	.	PASS	NT=ref;QSS=23;QSS_NT=23;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||AF186996.1|miRNA|NON_CODING|ENST00000583219||1),DOWNSTREAM(MODIFIER|||||GS1-388B5.6|unprocessed_pseudogene|NON_CODING|ENST00000418098||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	51:0:0:0:0,0:51,51:0,0:0,0	118:2:0:0:0,0:108,110:0,0:8,10
3	125457075	rs9830220	A	G	.	PASS	NT=ref;QSS=24;QSS_NT=24;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||AF186996.1|miRNA|NON_CODING|ENST00000583219||1),DOWNSTREAM(MODIFIER|||||GS1-388B5.6|unprocessed_pseudogene|NON_CODING|ENST00000418098||1),INTERGENIC(MODIFIER||||||||||1);RSPOS=125457075;GMAF=0.1868;dbSNPBuildID=119;SSR=0;SAO=0;VP=050000000005000116000100;WGT=1;VC=SNV;ASP;GNO;KGPhase1;KGPROD;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	53:0:0:0:53,54:0,0:0,0:0,0	116:1:0:0:108,109:0,0:7,10:0,0
3	125477563	.	A	G	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||GS1-388B5.8|processed_pseudogene|NON_CODING|ENST00000467186||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	52:1:0:0:51,52:0,0:0,1:0,0	117:1:0:0:110,112:0,0:6,8:0,0
3	125479755	rs4047985	G	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||GS1-388B5.8|processed_pseudogene|NON_CODING|ENST00000467186||1),INTERGENIC(MODIFIER||||||||||1);RSPOS=125479755;dbSNPBuildID=108;SSR=0;SAO=0;VP=050100000009000002000100;WGT=1;VC=SNV;SLO;CFL;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:1:0:0:0,0:0,0:28,29:0,0	78:0:0:0:0,0:6,7:70,70:2,2
3	125482644	.	T	C	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:1:0:0:0,0:0,0:0,1:34,34	113:2:0:0:0,0:7,10:2,3:102,104
3	125482645	.	T	C	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:1:0:0:0,0:0,0:0,0:34,35	113:2:0:0:0,0:7,10:0,0:104,107
3	125482687	.	T	C	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:1:0:0:0,0:0,0:1,1:38,40	112:2:0:0:0,0:6,8:1,1:103,107
3	125513953	.	C	T	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=CC->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=EXON(MODIFIER|||||RP11-379B18.2|processed_pseudogene|NON_CODING|ENST00000483907|1|1),UPSTREAM(MODIFIER|||||MIR548I1|miRNA|NON_CODING|ENST00000408810||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	43:0:0:0:0,0:43,43:0,0:0,1	110:4:0:0:0,0:98,101:0,0:8,11
3	125513954	.	A	G	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=AA->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=EXON(MODIFIER|||||RP11-379B18.2|processed_pseudogene|NON_CODING|ENST00000483907|1|1),UPSTREAM(MODIFIER|||||MIR548I1|miRNA|NON_CODING|ENST00000408810||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	43:0:0:0:43,43:0,0:0,1:0,0	111:4:0:0:99,101:0,0:8,12:0,0
3	125519116	.	G	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||RP11-379B18.2|processed_pseudogene|NON_CODING|ENST00000483907||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:3:0:0:0,0:0,0:30,33:0,0	90:2:0:0:6,8:0,1:81,83:1,1
3	125521092	.	G	A	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=GG->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	50:0:0:0:0,1:0,0:50,50:0,0	102:0:0:0:9,15:0,0:92,94:1,1
3	125521111	.	A	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=AA->AC;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	52:1:0:0:51,52:0,2:0,0:0,0	102:2:0:0:92,95:8,14:0,0:0,0
3	125521136	rs199550139	C	T	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=CC->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=125521136;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	48:1:0:0:0,0:47,48:0,0:0,1	105:1:0:0:1,1:95,97:0,0:8,13
3	125521450	rs200501532	G	A	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=125521450;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:1:0:0:0,0:0,0:36,37:0,0	101:3:0:0:10,15:0,0:87,89:1,1
3	125524772	.	C	T	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:0:0:0:0,0:36,36:0,0:0,0	103:0:0:0:0,0:94,94:0,0:9,9
3	125535883	rs77960980	C	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||RP11-379B18.3|processed_pseudogene|NON_CODING|ENST00000492453||1);RSPOS=125535883;dbSNPBuildID=131;SSR=0;SAO=0;VP=050000000005000102000100;WGT=1;VC=SNV;ASP;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:0:0:0:0,0:33,33:1,1:0,1	115:1:0:0:0,0:99,100:0,0:15,22
3	125538956	.	C	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||RP11-379B18.3|processed_pseudogene|NON_CODING|ENST00000492453||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:1:0:0:0,0:32,33:0,0:0,0	94:3:0:0:0,0:84,87:0,0:7,8
3	125538978	rs146396547	A	G	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||RP11-379B18.3|processed_pseudogene|NON_CODING|ENST00000492453||1);RSPOS=125538978;dbSNPBuildID=134;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:0:0:0:33,33:0,0:0,0:0,0	100:2:0:0:86,87:0,0:12,14:0,0
3	125539099	.	A	C	.	PASS	NT=ref;QSS=25;QSS_NT=25;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||RP11-379B18.3|processed_pseudogene|NON_CODING|ENST00000492453||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	49:0:0:0:49,49:0,0:0,0:0,0	82:0:0:0:76,76:6,8:0,0:0,0
3	125924323	.	T	G	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=TT->GT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER|||||ALDH1L1-AS2|processed_transcript|NON_CODING|ENST00000500232|1|1),INTRON(MODIFIER|||||ALDH1L1-AS2|processed_transcript|NON_CODING|ENST00000502278|1|1),UPSTREAM(MODIFIER|||||ALDH1L1-AS2|processed_transcript|NON_CODING|ENST00000500525||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:2:0:0:0,0:0,0:1,2:30,31	70:4:0:0:0,0:0,0:16,19:50,51
3	126520769	.	G	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->GT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER||||235|CHCHD6|protein_coding|CODING|ENST00000290913|4|1),INTRON(MODIFIER||||256|CHCHD6|protein_coding|CODING|ENST00000508789|4|1),INTRON(MODIFIER|||||CHCHD6|nonsense_mediated_decay|CODING|ENST00000503119|5|1),INTRON(MODIFIER|||||CHCHD6|processed_transcript|CODING|ENST00000514908|4|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:0:0:0:0,0:0,0:37,37:0,1	114:2:0:0:0,0:0,0:101,104:11,15
3	127567105	.	C	T	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	45:2:0:0:0,0:43,45:0,0:0,0	93:1:0:0:0,0:85,86:0,0:7,7
3	128392963	.	A	C	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||POU5F1P6|unprocessed_pseudogene|NON_CODING|ENST00000466990||1),INTRON(MODIFIER||||435|RPN1|protein_coding|CODING|ENST00000497289|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	62:0:0:0:62,62:0,0:0,0:0,0	158:0:0:0:151,152:6,6:0,0:1,1
3	128438289	.	A	G	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||SNORA24|snoRNA|NON_CODING|ENST00000384401||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:0:0:0:35,35:0,0:0,0:0,0	122:1:0:0:110,112:0,0:11,11:0,0
3	129721758	.	C	G	.	PASS	NT=ref;QSS=23;QSS_NT=23;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||RP11-93K22.1|processed_pseudogene|NON_CODING|ENST00000509298||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	51:1:0:0:0,0:50,56:0,0:0,0	89:0:0:0:0,0:84,87:5,6:0,0
3	129721822	.	G	A	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||RP11-93K22.1|processed_pseudogene|NON_CODING|ENST00000509298||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	48:1:0:0:0,0:0,0:47,55:0,0	97:1:0:0:6,7:0,0:90,95:0,0
3	129743011	.	G	A	.	PASS	NT=ref;QSS=23;QSS_NT=23;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||RP11-93K22.8|unprocessed_pseudogene|NON_CODING|ENST00000504655||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	43:0:0:0:0,0:0,0:43,43:0,0	95:1:0:0:12,17:0,0:82,82:0,0
3	129743026	.	T	C	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||RP11-93K22.8|unprocessed_pseudogene|NON_CODING|ENST00000504655||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:0:0:0:0,0:0,0:0,0:40,40	99:1:0:0:0,0:13,17:1,1:84,85
3	129743076	.	G	C	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||RP11-93K22.8|unprocessed_pseudogene|NON_CODING|ENST00000504655||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:0:0:0:0,0:0,0:37,37:0,0	99:1:0:0:0,0:6,9:92,92:0,0
3	129925177	.	C	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:1:0:0:0,0:36,37:0,0:0,0	108:2:0:0:1,1:99,104:0,0:6,8
3	129925188	.	T	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:1:0:0:0,0:0,0:0,0:37,38	110:1:0:0:6,9:0,1:0,0:103,105
3	129939347	.	T	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||COL6A4P2|processed_transcript|NON_CODING|ENST00000507516|4|1),INTRON(MODIFIER|||||COL6A4P2|unitary_pseudogene|NON_CODING|ENST00000504443|4|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:0:0:0:0,0:0,0:0,0:29,30	106:1:0:0:0,0:14,15:1,1:90,90
3	130466996	.	T	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER||||1358|PIK3R4|protein_coding|CODING|ENST00000356763||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:0:0:0:0,0:0,0:0,0:32,32	86:0:0:0:0,0:7,7:0,0:79,79
3	130466997	.	A	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER||||1358|PIK3R4|protein_coding|CODING|ENST00000356763||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:0:0:0:31,31:0,0:0,0:0,0	87:0:0:0:83,83:0,0:4,4:0,0
3	132021529	.	A	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	43:0:0:0:43,43:0,0:0,0:0,0	109:0:0:0:100,100:1,1:8,8:0,0
3	134985734	.	G	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:0:0:0:0,0:0,0:33,33:0,0	90:1:0:0:0,0:0,0:85,86:4,5
3	136932779	.	C	A	.	PASS	NT=ref;QSS=23;QSS_NT=23;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	54:1:0:0:0,0:53,54:0,0:0,0	120:0:0:0:6,8:114,116:0,0:0,0
3	137102591	.	G	A	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	41:0:0:0:0,0:0,0:41,41:0,0	109:0:0:0:8,8:0,0:101,101:0,0
3	137476148	.	A	G	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	19:1:0:0:18,20:0,0:0,0:0,0	78:1:1:0:61,66:0,0:16,17:0,0
3	137747938	.	G	A	.	PASS	NT=ref;QSS=24;QSS_NT=24;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||261|CLDN18|protein_coding|CODING|ENST00000183605|3|1),INTRON(MODIFIER||||261|CLDN18|protein_coding|CODING|ENST00000343735|3|1),INTRON(MODIFIER|||||CLDN18|nonsense_mediated_decay|CODING|ENST00000479660|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	47:0:0:0:0,0:0,0:47,47:0,0	99:2:0:0:9,10:0,0:88,89:0,0
3	138749906	.	G	A	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||360|MRPS22|protein_coding|CODING|ENST00000495075|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:0:0:0:0,0:0,0:40,40:0,0	96:0:0:0:13,13:0,0:83,83:0,0
3	138859274	.	C	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||360|MRPS22|protein_coding|CODING|ENST00000495075|1|1),INTRON(MODIFIER||||50|MRPS22|protein_coding|CODING|ENST00000495225|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:0:0:0:0,0:34,34:0,0:0,0	133:1:0:0:0,0:118,118:0,0:14,15
3	140621780	.	C	A	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||RP11-4H14.1|processed_pseudogene|NON_CODING|ENST00000484754||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:0:0:0:0,0:40,40:0,0:0,0	113:2:0:0:6,6:105,107:0,0:0,0
3	144259911	.	G	A	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:0:0:0:0,0:0,0:37,38:0,0	86:1:0:0:5,5:0,0:80,81:0,1
3	144327358	.	G	T	.	PASS	NT=ref;QSS=25;QSS_NT=25;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:1:0:0:0,0:0,0:35,36:0,0	99:1:0:0:0,0:0,0:82,84:16,17
3	144391199	.	G	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:0:0:0:0,0:0,0:32,32:0,0	117:0:0:0:11,11:0,0:106,107:0,0
3	145318793	.	A	C	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:0:0:0:35,36:0,0:0,0:0,0	117:1:0:0:110,111:6,6:0,0:0,0
3	150531225	.	C	T	.	PASS	NT=ref;QSS=23;QSS_NT=23;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	46:0:0:0:0,0:46,46:0,0:0,0	100:2:0:0:0,0:91,93:0,1:7,7
3	150591444	.	C	T	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||272|FAM188B2|protein_coding|CODING|ENST00000465419|5|1),INTRON(MODIFIER||||356|FAM188B2|protein_coding|CODING|ENST00000397891|7|1),INTRON(MODIFIER|||||CLRN1-AS1|antisense|NON_CODING|ENST00000476886|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:1:0:0:0,0:39,39:0,0:0,0	96:0:0:0:0,0:91,91:0,0:5,5
3	150666137	.	A	G	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||114|CLRN1|protein_coding|CODING|ENST00000468836|1|1),INTRON(MODIFIER||||232|CLRN1|protein_coding|CODING|ENST00000327047|1|1),INTRON(MODIFIER||||245|CLRN1|protein_coding|CODING|ENST00000328863|1|1),INTRON(MODIFIER|||||CLRN1-AS1|antisense|NON_CODING|ENST00000476886|1|1),INTRON(MODIFIER|||||CLRN1|retained_intron|CODING|ENST00000472224|1|1),INTRON(MODIFIER|||||RP11-166N6.2|antisense|NON_CODING|ENST00000469268|1|1),UPSTREAM(MODIFIER||||120|CLRN1|protein_coding|CODING|ENST00000295911||1),UPSTREAM(MODIFIER||||38|CLRN1|protein_coding|CODING|ENST00000485607||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:0:0:0:35,37:0,0:0,0:0,0	108:1:0:0:101,108:0,0:6,6:0,0
3	152412037	.	A	G	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:3:1:0:32,77:0,0:0,0:0,0	118:24:8:0:87,232:1,1:6,15:0,0
3	153228729	.	G	T	.	PASS	NT=ref;QSS=30;QSS_NT=30;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-23D24.2|processed_transcript|NON_CODING|ENST00000493214|5|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	44:0:0:0:0,0:0,0:44,48:0,0	97:0:0:0:0,0:0,0:81,104:16,22
3	153710100	.	C	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	42:0:0:0:0,0:42,42:0,0:0,0	106:2:0:0:0,0:99,101:0,0:5,5
3	155316065	.	T	G	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1002|PLCH1|protein_coding|CODING|ENST00000447496|1|1),INTRON(MODIFIER||||1014|PLCH1|protein_coding|CODING|ENST00000494598|1|1),INTRON(MODIFIER||||1655|PLCH1|protein_coding|CODING|ENST00000334686|1|1),INTRON(MODIFIER||||1655|PLCH1|protein_coding|CODING|ENST00000414191|1|1),INTRON(MODIFIER||||1655|PLCH1|protein_coding|CODING|ENST00000460012|2|1),INTRON(MODIFIER||||1693|PLCH1|protein_coding|CODING|ENST00000340059|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:0:0:0:0,0:0,0:0,0:35,35	120:1:0:0:0,0:0,0:14,14:105,106
3	156489427	.	C	T	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-392A22.2|processed_transcript|NON_CODING|ENST00000472943|1|1),INTRON(MODIFIER|||||RP11-392A22.2|processed_transcript|NON_CODING|ENST00000473352|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:0:0:0:0,0:36,36:0,0:0,0	105:1:0:0:0,0:97,98:0,0:7,7
3	162004269	.	G	A	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:1:0:0:0,0:0,0:36,37:0,0	101:2:0:0:8,8:0,0:91,93:0,0
3	163113215	.	T	C	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:0:0:0:1,1:0,0:0,0:38,38	110:0:0:0:0,0:7,7:0,0:103,103
3	163283318	.	G	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:1:0:0:0,0:0,1:31,31:0,0	106:1:0:0:6,6:0,0:98,98:1,1
3	163353884	.	T	C	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:0:0:0:0,0:0,0:0,0:38,38	102:0:0:0:0,0:12,12:0,0:90,92
3	163353911	.	G	C	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:0:0:0:0,0:0,0:35,35:0,0	103:2:0:0:1,1:11,11:89,92:0,0
3	163406826	.	C	G	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	44:0:0:0:0,0:44,44:0,0:0,0	121:2:0:0:1,1:109,111:9,9:0,0
3	163657538	.	T	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:1:0:0:0,0:0,0:0,0:28,29	86:0:0:0:0,0:5,5:0,0:81,82
3	163976786	.	T	C	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	42:0:0:0:0,0:0,0:0,0:42,42	90:2:0:0:0,0:6,6:0,0:82,84
3	164309880	.	C	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:0:0:0:0,0:35,35:0,0:0,0	113:0:0:0:0,0:107,107:0,0:6,6
3	164554936	.	T	C	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:0:0:0:0,0:0,0:0,0:34,34	105:1:0:0:0,0:10,10:0,0:94,94
3	164891025	.	T	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:0:0:0:0,0:0,0:0,0:33,33	98:2:0:0:0,1:8,8:0,0:88,90
3	165398475	.	C	T	.	PASS	NT=ref;QSS=31;QSS_NT=31;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:0:0:0:0,0:39,39:0,0:0,0	90:0:0:0:0,0:74,74:0,0:16,16
3	165769916	rs188996481	C	T	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=165769916;GMAF=0.0005;dbSNPBuildID=135;SSR=0;SAO=0;VP=050000000005000014000100;WGT=1;VC=SNV;ASP;KGPhase1;KGPROD	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:0:0:0:0,0:38,38:0,0:0,0	92:1:0:0:0,0:81,82:0,0:10,11
3	168603453	.	A	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	27:0:0:0:27,27:0,0:0,0:0,0	108:1:0:0:101,102:0,0:6,6:0,0
3	169096242	.	A	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||124|MECOM|protein_coding|CODING|ENST00000486748||1),INTRON(MODIFIER||||1230|MECOM|protein_coding|CODING|ENST00000494292|2|1),INTRON(MODIFIER|||||MECOM|processed_transcript|CODING|ENST00000485957|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:4:0:0:30,35:0,0:0,0:0,0	69:12:0:0:50,62:7,9:0,0:0,0
3	169209254	.	C	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1230|MECOM|protein_coding|CODING|ENST00000494292|1|1),INTRON(MODIFIER||||124|MECOM|protein_coding|CODING|ENST00000486748|2|1),INTRON(MODIFIER|||||MECOM|processed_transcript|CODING|ENST00000485957|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:0:0:0:0,0:33,33:0,0:0,0	112:0:0:0:0,0:98,98:0,0:14,14
3	169276833	rs12490624	C	T	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1230|MECOM|protein_coding|CODING|ENST00000494292|1|1),INTRON(MODIFIER||||124|MECOM|protein_coding|CODING|ENST00000486748|2|1),INTRON(MODIFIER|||||MECOM|processed_transcript|CODING|ENST00000485957|1|1);RSPOS=169276833;dbSNPBuildID=120;SSR=0;SAO=0;VP=050000080001040102000100;GENEINFO=MECOM:2122;WGT=1;VC=SNV;INT;VLD;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:0:0:0:0,0:37,38:0,0:0,0	107:7:0:0:0,0:90,97:0,0:10,10
3	169296168	.	C	A	.	PASS	NT=ref;QSS=23;QSS_NT=23;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1230|MECOM|protein_coding|CODING|ENST00000494292|1|1),INTRON(MODIFIER||||124|MECOM|protein_coding|CODING|ENST00000486748|1|1),INTRON(MODIFIER|||||MECOM|processed_transcript|CODING|ENST00000485957|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	46:0:0:0:0,0:46,46:0,0:0,0	110:1:0:0:7,7:102,103:0,0:0,0
3	169916126	.	C	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	47:0:0:0:0,0:46,47:0,0:1,1	121:2:0:0:0,0:109,112:0,0:10,11
3	170386075	rs146108848	T	C	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=TT->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER||||165|CLDN11|protein_coding|CODING|ENST00000451576|2|1),INTRON(MODIFIER||||165|CLDN11|protein_coding|CODING|ENST00000486975|2|1),INTRON(MODIFIER|||||CLDN11|processed_transcript|CODING|ENST00000480067|2|1);RSPOS=170386075;dbSNPBuildID=134;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	46:0:0:0:0,0:0,1:0,0:46,53	104:2:0:0:0,0:6,9:0,0:96,114
3	170417344	.	G	T	.	PASS	NT=ref;QSS=23;QSS_NT=23;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||165|CLDN11|protein_coding|CODING|ENST00000451576|2|1),INTRON(MODIFIER||||165|CLDN11|protein_coding|CODING|ENST00000486975|2|1),INTRON(MODIFIER|||||CLDN11|processed_transcript|CODING|ENST00000480067|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	44:0:0:0:0,0:0,0:44,44:0,0	100:1:0:0:0,0:0,0:89,89:10,11
3	171343685	rs113356372	A	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=AA->AT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER||||1036|PLD1|protein_coding|CODING|ENST00000356327|22|1),INTRON(MODIFIER||||1074|PLD1|protein_coding|CODING|ENST00000351298|23|1),INTRON(MODIFIER||||597|PLD1|protein_coding|CODING|ENST00000342215|21|1),INTRON(MODIFIER||||971|PLD1|protein_coding|CODING|ENST00000340989|23|1),INTRON(MODIFIER|||||PLD1|processed_transcript|CODING|ENST00000465816|5|1),INTRON(MODIFIER|||||PLD1|retained_intron|CODING|ENST00000467432|1|1);RSPOS=171343685;dbSNPBuildID=132;SSR=0;SAO=0;VP=050000080005000002000100;GENEINFO=PLD1:5337;WGT=1;VC=SNV;INT;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	42:1:0:0:41,41:0,0:0,1:0,2	100:0:0:0:92,92:0,0:0,0:8,17
3	171343746	.	C	A	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=CC->AC;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER||||1036|PLD1|protein_coding|CODING|ENST00000356327|22|1),INTRON(MODIFIER||||1074|PLD1|protein_coding|CODING|ENST00000351298|23|1),INTRON(MODIFIER||||597|PLD1|protein_coding|CODING|ENST00000342215|21|1),INTRON(MODIFIER||||971|PLD1|protein_coding|CODING|ENST00000340989|23|1),INTRON(MODIFIER|||||PLD1|processed_transcript|CODING|ENST00000465816|5|1),INTRON(MODIFIER|||||PLD1|retained_intron|CODING|ENST00000467432|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	47:1:0:0:0,1:46,47:0,0:0,0	102:1:0:0:6,9:95,97:0,0:0,0
3	171343759	.	C	T	.	PASS	NT=ref;QSS=23;QSS_NT=23;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1036|PLD1|protein_coding|CODING|ENST00000356327|22|1),INTRON(MODIFIER||||1074|PLD1|protein_coding|CODING|ENST00000351298|23|1),INTRON(MODIFIER||||597|PLD1|protein_coding|CODING|ENST00000342215|21|1),INTRON(MODIFIER||||971|PLD1|protein_coding|CODING|ENST00000340989|23|1),INTRON(MODIFIER|||||PLD1|processed_transcript|CODING|ENST00000465816|5|1),INTRON(MODIFIER|||||PLD1|retained_intron|CODING|ENST00000467432|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	46:0:0:0:0,0:46,46:0,0:0,0	95:2:0:0:0,0:87,90:0,0:6,7
3	173460328	.	C	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||366|NLGN1|protein_coding|CODING|ENST00000415045|3|1),INTRON(MODIFIER||||823|NLGN1|protein_coding|CODING|ENST00000361589|2|1),INTRON(MODIFIER||||823|NLGN1|protein_coding|CODING|ENST00000457714|3|1),INTRON(MODIFIER||||823|NLGN1|protein_coding|CODING|ENST00000545397|1|1),INTRON(MODIFIER||||863|NLGN1|protein_coding|CODING|ENST00000401917|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:0:0:0:0,0:31,31:0,0:0,0	113:1:0:0:13,13:99,100:0,0:0,0
3	173571753	.	C	G	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||366|NLGN1|protein_coding|CODING|ENST00000415045|5|1),INTRON(MODIFIER||||823|NLGN1|protein_coding|CODING|ENST00000361589|3|1),INTRON(MODIFIER||||823|NLGN1|protein_coding|CODING|ENST00000457714|4|1),INTRON(MODIFIER||||823|NLGN1|protein_coding|CODING|ENST00000545397|2|1),INTRON(MODIFIER||||863|NLGN1|protein_coding|CODING|ENST00000401917|4|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:0:0:0:0,0:33,33:0,0:0,0	128:1:0:0:0,0:121,122:6,6:0,0
3	174614368	.	A	G	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||114|NAALADL2|protein_coding|CODING|ENST00000434257|3|1),INTRON(MODIFIER||||795|NAALADL2|protein_coding|CODING|ENST00000454872|1|1),INTRON(MODIFIER|||||NAALADL2|processed_transcript|CODING|ENST00000473253|1|1),INTRON(MODIFIER|||||NAALADL2|retained_intron|CODING|ENST00000485853|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:0:0:0:37,37:0,0:0,0:0,0	118:0:0:0:106,106:0,0:12,12:0,0
3	174766387	.	C	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||114|NAALADL2|protein_coding|CODING|ENST00000434257|3|1),INTRON(MODIFIER||||795|NAALADL2|protein_coding|CODING|ENST00000454872|1|1),INTRON(MODIFIER|||||NAALADL2|processed_transcript|CODING|ENST00000473253|1|1),INTRON(MODIFIER|||||NAALADL2|retained_intron|CODING|ENST00000485853|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	28:1:0:0:0,0:27,28:0,0:0,0	112:5:0:0:6,8:100,103:1,1:0,0
3	174934715	.	C	A	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||795|NAALADL2|protein_coding|CODING|ENST00000454872|2|1),INTRON(MODIFIER|||||NAALADL2|processed_transcript|CODING|ENST00000473253|2|1),INTRON(MODIFIER|||||NAALADL2|processed_transcript|CODING|ENST00000489299|1|1),INTRON(MODIFIER|||||NAALADL2|retained_intron|CODING|ENST00000485853|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	45:1:0:0:0,0:44,45:0,0:0,0	120:1:0:0:6,6:113,114:0,0:0,0
3	175467930	.	T	A	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||795|NAALADL2|protein_coding|CODING|ENST00000454872|12|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:0:0:0:0,0:0,0:0,0:34,34	116:0:0:0:7,7:0,0:0,0:109,109
3	175899665	rs200018851	A	G	.	PASS	NT=ref;QSS=27;QSS_NT=27;SGT=AA->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=175899665;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	69:3:0:0:66,78:0,0:0,1:0,0	278:12:1:0:254,291:0,0:12,15:0,0
3	178286666	.	A	T	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||136|KCNMB2|protein_coding|CODING|ENST00000437510|1|1),INTRON(MODIFIER||||235|KCNMB2|protein_coding|CODING|ENST00000420517|1|1),INTRON(MODIFIER||||235|KCNMB2|protein_coding|CODING|ENST00000432997|1|1),INTRON(MODIFIER||||235|KCNMB2|protein_coding|CODING|ENST00000452583|1|1),INTRON(MODIFIER||||99|KCNMB2|protein_coding|CODING|ENST00000455865|1|1),INTRON(MODIFIER|||||KCNMB2|nonsense_mediated_decay|CODING|ENST00000422927|1|1),INTRON(MODIFIER|||||KCNMB2|processed_transcript|CODING|ENST00000470361|1|1),INTRON(MODIFIER|||||RP11-385J1.2|processed_transcript|NON_CODING|ENST00000437488|5|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:0:0:0:38,38:0,0:0,1:0,0	95:0:0:0:85,85:0,0:2,2:8,8
3	179515393	rs2063509	A	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||434|PEX5L|protein_coding|CODING|ENST00000468741||1),DOWNSTREAM(MODIFIER||||514|PEX5L|protein_coding|CODING|ENST00000467440||1),DOWNSTREAM(MODIFIER||||518|PEX5L|protein_coding|CODING|ENST00000392649||1),DOWNSTREAM(MODIFIER||||518|PEX5L|protein_coding|CODING|ENST00000464614||1),DOWNSTREAM(MODIFIER||||567|PEX5L|protein_coding|CODING|ENST00000472994||1),DOWNSTREAM(MODIFIER||||583|PEX5L|protein_coding|CODING|ENST00000476138||1),DOWNSTREAM(MODIFIER||||591|PEX5L|protein_coding|CODING|ENST00000485199||1),DOWNSTREAM(MODIFIER||||602|PEX5L|protein_coding|CODING|ENST00000465751||1),DOWNSTREAM(MODIFIER||||624|PEX5L|protein_coding|CODING|ENST00000263962||1),UTR_3_PRIME(MODIFIER||||626|PEX5L|protein_coding|CODING|ENST00000467460|15|1);RSPOS=179515393;dbSNPBuildID=94;SSR=0;SAO=0;VP=050100800205040102000100;GENEINFO=PEX5L:51555;WGT=1;VC=SNV;SLO;REF;U3;ASP;VLD;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:0:0:0:32,32:0,0:1,1:0,0	85:0:0:0:80,80:0,0:0,0:5,5
3	179801097	.	G	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:0:0:0:0,0:0,0:32,32:0,0	117:6:0:0:1,2:0,0:101,105:9,10
3	180767557	.	C	G	.	PASS	NT=ref;QSS=26;QSS_NT=26;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-436A20.3|processed_transcript|NON_CODING|ENST00000487240|2|1),INTRON(MODIFIER|||||SOX2-OT|processed_transcript|NON_CODING|ENST00000461063|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	52:1:0:0:0,0:51,52:0,0:0,0	98:0:0:0:0,0:90,90:8,8:0,0
3	181095848	.	C	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||SOX2-OT|processed_transcript|NON_CODING|ENST00000460739|3|1),INTRON(MODIFIER|||||SOX2-OT|processed_transcript|NON_CODING|ENST00000469278|2|1),INTRON(MODIFIER|||||SOX2-OT|processed_transcript|NON_CODING|ENST00000493116|2|1),INTRON(MODIFIER|||||SOX2-OT|processed_transcript|NON_CODING|ENST00000493521|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:0:0:0:0,0:29,29:0,0:0,0	102:1:0:0:4,4:96,97:1,1:0,0
3	181626653	.	G	C	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:2:0:0:0,0:0,0:35,37:0,0	92:2:0:0:0,0:6,6:84,86:0,0
3	181817654	.	T	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:0:0:0:0,0:0,0:0,1:31,36	53:2:0:0:0,0:6,6:0,0:45,52
3	182736102	rs61596430	T	C	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||597|MCCC1|protein_coding|CODING|ENST00000476176||1),DOWNSTREAM(MODIFIER|||||MCCC1-AS1|antisense|NON_CODING|ENST00000471731||1),DOWNSTREAM(MODIFIER|||||MCCC1|processed_transcript|CODING|ENST00000489909||1),INTRON(MODIFIER||||426|MCCC1|protein_coding|CODING|ENST00000539926|14|1),INTRON(MODIFIER||||616|MCCC1|protein_coding|CODING|ENST00000492597|16|1),INTRON(MODIFIER||||725|MCCC1|protein_coding|CODING|ENST00000265594|17|1),INTRON(MODIFIER|||||MCCC1|nonsense_mediated_decay|CODING|ENST00000495767|14|1),INTRON(MODIFIER|||||MCCC1|nonsense_mediated_decay|CODING|ENST00000497830|15|1),INTRON(MODIFIER|||||MCCC1|nonsense_mediated_decay|CODING|ENST00000497959|17|1),INTRON(MODIFIER|||||MCCC1|retained_intron|CODING|ENST00000464601|2|1);RSPOS=182736102;dbSNPBuildID=129;SSR=0;SAO=0;VP=050100080001040102000100;GENEINFO=MCCC1:56922;WGT=1;VC=SNV;SLO;INT;VLD;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	41:2:0:0:0,0:0,1:1,2:38,61	107:3:0:0:0,1:8,20:1,3:95,155
3	182930307	.	A	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1074|MCF2L2|protein_coding|CODING|ENST00000473233|22|1),INTRON(MODIFIER||||1114|MCF2L2|protein_coding|CODING|ENST00000328913|22|1),INTRON(MODIFIER|||||MCF2L2|retained_intron|CODING|ENST00000488149|23|1),UPSTREAM(MODIFIER|||||MCF2L2|processed_transcript|CODING|ENST00000468976||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:1:0:0:35,37:0,1:0,0:0,0	91:0:0:0:84,86:0,0:0,0:7,7
3	183560280	.	C	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER||||295|PARL|protein_coding|CODING|ENST00000435888|5|1),INTRON(MODIFIER||||329|PARL|protein_coding|CODING|ENST00000311101|5|1),INTRON(MODIFIER||||379|PARL|protein_coding|CODING|ENST00000317096|5|1),INTRON(MODIFIER|||||PARL|nonsense_mediated_decay|CODING|ENST00000421484|5|1),INTRON(MODIFIER|||||PARL|retained_intron|CODING|ENST00000488202|1|1),UPSTREAM(MODIFIER||||63|PARL|protein_coding|CODING|ENST00000450375||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	51:1:0:0:0,0:50,51:0,0:0,0	101:1:0:0:0,0:96,98:0,0:4,4
3	185173170	.	A	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||MAP3K13|nonsense_mediated_decay|CODING|ENST00000433092||1),INTRON(MODIFIER||||245|MAP3K13|protein_coding|CODING|ENST00000420577|4|1),INTRON(MODIFIER||||759|MAP3K13|protein_coding|CODING|ENST00000446828|6|1),INTRON(MODIFIER||||822|MAP3K13|protein_coding|CODING|ENST00000443863|7|1),INTRON(MODIFIER||||822|MAP3K13|protein_coding|CODING|ENST00000535426|6|1),INTRON(MODIFIER||||966|MAP3K13|protein_coding|CODING|ENST00000265026|7|1),INTRON(MODIFIER||||966|MAP3K13|protein_coding|CODING|ENST00000424227|8|1),INTRON(MODIFIER|||||MAP3K13|nonsense_mediated_decay|CODING|ENST00000438053|5|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:4:1:0:27,41:0,0:0,0:0,0	138:23:7:0:105,177:10,14:0,0:0,0
3	185362391	rs138819760	T	G	.	PASS	NT=ref;QSS=29;QSS_NT=29;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||IGF2BP2|processed_transcript|CODING|ENST00000464166||1),DOWNSTREAM(MODIFIER|||||IGF2BP2|processed_transcript|CODING|ENST00000494906||1),UTR_3_PRIME(MODIFIER||||542|IGF2BP2|protein_coding|CODING|ENST00000421047|15|1),UTR_3_PRIME(MODIFIER||||556|IGF2BP2|protein_coding|CODING|ENST00000346192|15|1),UTR_3_PRIME(MODIFIER||||599|IGF2BP2|protein_coding|CODING|ENST00000382199|16|1),UTR_3_PRIME(MODIFIER||||605|IGF2BP2|protein_coding|CODING|ENST00000457616|16|1);RSPOS=185362391;dbSNPBuildID=134;SSR=0;SAO=0;VP=050000800205000002000100;GENEINFO=IGF2BP2:10644;WGT=1;VC=SNV;REF;U3;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	28:2:5:0:0,1:0,0:0,0:26,27	49:7:11:0:0,0:0,0:12,14:30,36
3	185854938	.	T	C	.	PASS	NT=ref;QSS=25;QSS_NT=25;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||DGKG|processed_transcript|CODING|ENST00000447054|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	51:1:0:0:0,0:0,0:0,0:50,51	101:0:0:0:1,1:10,10:0,0:90,90
3	186547353	.	T	C	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||RP11-573D15.1|unprocessed_pseudogene|NON_CODING|ENST00000448639||1),INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||RP11-573D15.2|processed_transcript|NON_CODING|ENST00000419745||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	41:1:0:0:0,0:0,0:0,0:40,41	108:0:0:0:0,0:8,8:0,0:100,100
3	188870656	.	T	C	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||TPRG1|processed_transcript|CODING|ENST00000464152||1),DOWNSTREAM(MODIFIER|||||TPRG1|processed_transcript|CODING|ENST00000473790||1),DOWNSTREAM(MODIFIER|||||TPRG1|processed_transcript|CODING|ENST00000488841||1),INTRON(MODIFIER||||275|TPRG1|protein_coding|CODING|ENST00000433971|6|1),INTRON(MODIFIER||||99|TPRG1|protein_coding|CODING|ENST00000412373|5|1),INTRON(MODIFIER|||||TPRG1|processed_transcript|CODING|ENST00000460613|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:0:0:0:0,2:0,0:0,0:35,35	103:2:0:0:0,0:9,12:0,1:92,92
3	189148485	.	G	T	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:1:0:0:0,0:0,0:38,39:0,0	96:2:0:0:0,0:0,0:86,88:8,8
3	190252083	.	G	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||112|IL1RAP|protein_coding|CODING|ENST00000422625|1|1),INTRON(MODIFIER||||215|IL1RAP|protein_coding|CODING|ENST00000434491|1|1),INTRON(MODIFIER||||356|IL1RAP|protein_coding|CODING|ENST00000422485|1|1),INTRON(MODIFIER||||356|IL1RAP|protein_coding|CODING|ENST00000422940|1|1),INTRON(MODIFIER||||570|IL1RAP|protein_coding|CODING|ENST00000072516|1|1),INTRON(MODIFIER||||570|IL1RAP|protein_coding|CODING|ENST00000412504|1|1),INTRON(MODIFIER||||570|IL1RAP|protein_coding|CODING|ENST00000439062|1|1),INTRON(MODIFIER||||570|IL1RAP|protein_coding|CODING|ENST00000447382|1|1),INTRON(MODIFIER||||687|IL1RAP|protein_coding|CODING|ENST00000317757|1|1),INTRON(MODIFIER||||687|IL1RAP|protein_coding|CODING|ENST00000443369|1|1),INTRON(MODIFIER|||||IL1RAP|nonsense_mediated_decay|CODING|ENST00000342550|1|1),INTRON(MODIFIER|||||IL1RAP|nonsense_mediated_decay|CODING|ENST00000413869|1|1),INTRON(MODIFIER|||||IL1RAP|retained_intron|CODING|ENST00000461629|1|1),INTRON(MODIFIER|||||IL1RAP|retained_intron|CODING|ENST00000473566|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	27:0:0:0:0,0:0,0:27,27:0,0	100:1:0:0:0,0:6,6:93,94:0,0
3	191412816	.	C	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:0:0:0:0,0:29,29:0,0:0,0	103:3:0:0:0,0:91,93:0,0:9,10
3	191743525	rs140162574	G	T	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||RP11-655G22.1|lincRNA|NON_CODING|ENST00000444729||1),UPSTREAM(MODIFIER|||||RP11-655G22.1|lincRNA|NON_CODING|ENST00000452657||1);RSPOS=191743525;GMAF=0.2294;dbSNPBuildID=134;SSR=0;SAO=0;VP=050000000005000016000100;WGT=1;VC=SNV;ASP;KGPhase1;KGPROD;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:1:0:0:0,0:0,0:36,38:0,0	85:0:0:0:0,0:0,0:80,81:5,5
3	191934876	.	A	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||106|FGF12|protein_coding|CODING|ENST00000418610|3|1),INTRON(MODIFIER||||138|FGF12|protein_coding|CODING|ENST00000440901|1|1),INTRON(MODIFIER||||140|FGF12|protein_coding|CODING|ENST00000448795|3|1),INTRON(MODIFIER||||144|FGF12|protein_coding|CODING|ENST00000430714|3|1),INTRON(MODIFIER||||181|FGF12|protein_coding|CODING|ENST00000264730|3|1),INTRON(MODIFIER||||181|FGF12|protein_coding|CODING|ENST00000445105|4|1),INTRON(MODIFIER||||181|FGF12|protein_coding|CODING|ENST00000450716|4|1),INTRON(MODIFIER||||243|FGF12|protein_coding|CODING|ENST00000454309|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:0:0:0:29,29:0,0:0,0:0,0	82:0:0:0:76,76:0,0:0,0:6,6
3	194001579	.	T	G	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-513G11.2|lincRNA|NON_CODING|ENST00000440556|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:0:0:0:0,0:0,0:0,0:39,39	97:0:0:0:0,0:0,0:6,7:91,91
3	194212598	.	T	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||AC108676.1|processed_transcript|NON_CODING|ENST00000455557||1),INTRON(MODIFIER||||1226|ATP13A3|protein_coding|CODING|ENST00000439040|2|1),INTRON(MODIFIER|||||AC046143.7|processed_transcript|NON_CODING|ENST00000448892|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:3:0:0:0,0:1,1:0,0:34,38	87:4:0:0:0,0:12,13:0,0:71,74
3	195211812	.	T	G	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	43:1:0:0:0,0:0,0:0,1:42,67	154:1:0:0:0,0:3,4:7,20:143,200
3	195217952	.	C	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	57:1:0:0:0,0:56,79:0,0:0,1	111:3:0:0:0,0:100,141:0,0:8,12
3	195227578	.	G	A	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=GG->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	46:2:0:0:0,1:0,0:44,61:0,0	128:7:0:0:7,16:0,1:114,153:0,2
3	195372406	.	C	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||520|MUC20|protein_coding|CODING|ENST00000381954|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	51:1:0:0:0,0:50,63:0,0:0,0	119:7:0:0:0,0:107,125:5,6:0,1
3	195374062	.	T	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||520|MUC20|protein_coding|CODING|ENST00000381954|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:2:0:0:0,0:2,3:0,0:28,37	72:5:0:0:8,11:1,3:0,0:58,79
3	195499887	.	T	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1125|MUC4|protein_coding|CODING|ENST00000349607|2|1),INTRON(MODIFIER||||1176|MUC4|protein_coding|CODING|ENST00000346145|3|1),INTRON(MODIFIER||||5360|MUC4|protein_coding|CODING|ENST00000475231|4|1),INTRON(MODIFIER||||5412|MUC4|protein_coding|CODING|ENST00000463781|4|1),INTRON(MODIFIER|||||MUC4|nonsense_mediated_decay|CODING|ENST00000462323|4|1),INTRON(MODIFIER|||||MUC4|nonsense_mediated_decay|CODING|ENST00000466475|4|1),INTRON(MODIFIER|||||MUC4|nonsense_mediated_decay|CODING|ENST00000470451|4|1),INTRON(MODIFIER|||||MUC4|nonsense_mediated_decay|CODING|ENST00000477086|4|1),INTRON(MODIFIER|||||MUC4|nonsense_mediated_decay|CODING|ENST00000477756|4|1),INTRON(MODIFIER|||||MUC4|nonsense_mediated_decay|CODING|ENST00000478156|4|1),INTRON(MODIFIER|||||MUC4|nonsense_mediated_decay|CODING|ENST00000479406|4|1),INTRON(MODIFIER|||||MUC4|nonsense_mediated_decay|CODING|ENST00000480843|4|1),UPSTREAM(MODIFIER|||||MUC4|processed_transcript|CODING|ENST00000486425||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:5:0:0:0,0:0,0:0,0:32,43	87:3:0:0:0,0:5,6:0,0:79,99
3	195670846	.	G	T	.	PASS	NT=ref;QSS=34;QSS_NT=34;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	89:1:0:0:1,2:0,0:87,95:0,0	216:7:0:0:1,2:1,2:200,225:7,8
3	195673524	rs78789590	T	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||RP11-480A16.1|lincRNA|NON_CODING|ENST00000570130||1),INTERGENIC(MODIFIER||||||||||1);RSPOS=195673524;dbSNPBuildID=131;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	46:0:0:0:0,0:0,0:0,0:46,46	112:7:0:0:0,1:6,12:0,0:99,107
3	195977773	.	C	T	.	PASS	NT=ref;QSS=26;QSS_NT=26;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||114|PCYT1A|protein_coding|CODING|ENST00000443555|3|1),INTRON(MODIFIER||||132|PCYT1A|protein_coding|CODING|ENST00000412869|3|1),INTRON(MODIFIER||||201|PCYT1A|protein_coding|CODING|ENST00000430755|1|1),INTRON(MODIFIER||||211|PCYT1A|protein_coding|CODING|ENST00000441879|3|1),INTRON(MODIFIER||||292|PCYT1A|protein_coding|CODING|ENST00000411591|3|1),INTRON(MODIFIER||||328|PCYT1A|protein_coding|CODING|ENST00000416798|3|1),INTRON(MODIFIER||||367|PCYT1A|protein_coding|CODING|ENST00000292823|4|1),INTRON(MODIFIER||||367|PCYT1A|protein_coding|CODING|ENST00000431016|3|1),INTRON(MODIFIER||||380|PCYT1A|protein_coding|CODING|ENST00000419333|2|1),INTRON(MODIFIER|||||AC069257.8|antisense|NON_CODING|ENST00000425275|1|1),INTRON(MODIFIER|||||PCYT1A|nonsense_mediated_decay|CODING|ENST00000438634|4|1),INTRON(MODIFIER|||||PCYT1A|nonsense_mediated_decay|CODING|ENST00000444822|3|1),INTRON(MODIFIER|||||PCYT1A|processed_transcript|CODING|ENST00000491544|3|1),INTRON(MODIFIER|||||PCYT1A|retained_intron|CODING|ENST00000460677|3|1),INTRON(MODIFIER|||||PCYT1A|retained_intron|CODING|ENST00000473978|3|1),INTRON(MODIFIER|||||TCTEX1D2|nonsense_mediated_decay|CODING|ENST00000431391|5|1),UPSTREAM(MODIFIER||||136|PCYT1A|protein_coding|CODING|ENST00000433733||1),UPSTREAM(MODIFIER|||||PCYT1A|retained_intron|CODING|ENST00000488235||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	52:1:0:0:0,0:51,54:0,0:0,0	112:8:0:0:0,0:95,102:2,4:7,8
3	197648429	.	G	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||197|IQCG|protein_coding|CODING|ENST00000416896||1),INTRON(MODIFIER||||310|IQCG|protein_coding|CODING|ENST00000453254|7|1),INTRON(MODIFIER||||443|IQCG|protein_coding|CODING|ENST00000265239|7|1),INTRON(MODIFIER||||443|IQCG|protein_coding|CODING|ENST00000455191|6|1),INTRON(MODIFIER|||||IQCG|retained_intron|CODING|ENST00000490748|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:0:0:0:1,1:0,0:35,37:0,0	92:1:0:0:1,2:0,0:84,92:6,6
3	197825839	rs111355347	T	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=197825839;dbSNPBuildID=132;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	55:7:0:0:0,1:1,3:0,0:47,84	124:13:0:0:2,3:14,21:0,1:95,176
3	197825860	rs200307742	C	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=197825860;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	86:9:0:0:0,0:75,128:0,0:2,7	186:12:0:0:0,1:161,288:0,0:13,21
3	197848754	rs184799508	G	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->GT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=DOWNSTREAM(MODIFIER|||||AC073135.2|unprocessed_pseudogene|NON_CODING|ENST00000458717||1),INTRON(MODIFIER|||||AC073135.4|processed_pseudogene|NON_CODING|ENST00000451150|2|1);RSPOS=197848754;dbSNPBuildID=135;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	43:0:0:0:0,0:0,0:43,43:0,1	96:0:0:0:0,0:0,0:91,92:5,6
3	197858766	.	C	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:0:0:0:0,0:29,33:0,0:0,0	113:1:0:0:0,0:107,110:0,0:5,9
4	750961	.	A	C	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=AA->AC;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER||||208|PCGF3|protein_coding|CODING|ENST00000521023|9|1),INTRON(MODIFIER||||242|PCGF3|protein_coding|CODING|ENST00000362003|8|1),INTRON(MODIFIER||||242|PCGF3|protein_coding|CODING|ENST00000470161|8|1),INTRON(MODIFIER||||242|PCGF3|protein_coding|CODING|ENST00000505655|6|1),INTRON(MODIFIER|||||PCGF3|nonsense_mediated_decay|CODING|ENST00000430644|8|1),INTRON(MODIFIER|||||PCGF3|nonsense_mediated_decay|CODING|ENST00000440452|9|1),INTRON(MODIFIER|||||PCGF3|processed_transcript|CODING|ENST00000488032|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:1:0:0:39,40:0,1:0,0:0,0	97:5:0:0:80,82:12,15:0,0:0,0
4	1089005	rs7687763	C	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||RNF212|retained_intron|CODING|ENST00000454487||1),DOWNSTREAM(MODIFIER|||||RP11-20I20.1|processed_pseudogene|NON_CODING|ENST00000513176||1),INTRON(MODIFIER||||232|RNF212|protein_coding|CODING|ENST00000382968|3|1),INTRON(MODIFIER||||273|RNF212|protein_coding|CODING|ENST00000333673|3|1),INTRON(MODIFIER||||297|RNF212|protein_coding|CODING|ENST00000433731|3|1),INTRON(MODIFIER|||||RNF212|nonsense_mediated_decay|CODING|ENST00000506730|2|1),INTRON(MODIFIER|||||RNF212|nonsense_mediated_decay|CODING|ENST00000508428|2|1),INTRON(MODIFIER|||||RNF212|nonsense_mediated_decay|CODING|ENST00000510715|4|1),INTRON(MODIFIER|||||RNF212|nonsense_mediated_decay|CODING|ENST00000511620|3|1),INTRON(MODIFIER|||||RNF212|retained_intron|CODING|ENST00000512552|2|1);RSPOS=1089005;dbSNPBuildID=116;SSR=0;SAO=0;VP=050000080001000002000100;GENEINFO=RNF212:285498;WGT=1;VC=SNV;INT;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	16:1:0:0:0,0:15,22:0,0:0,0	43:9:0:0:0,0:26,38:0,0:8,8
4	1096701	.	G	A	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||232|RNF212|protein_coding|CODING|ENST00000382968|2|1),INTRON(MODIFIER||||273|RNF212|protein_coding|CODING|ENST00000333673|2|1),INTRON(MODIFIER||||297|RNF212|protein_coding|CODING|ENST00000433731|2|1),INTRON(MODIFIER|||||RNF212|nonsense_mediated_decay|CODING|ENST00000506730|1|1),INTRON(MODIFIER|||||RNF212|nonsense_mediated_decay|CODING|ENST00000508428|1|1),INTRON(MODIFIER|||||RNF212|nonsense_mediated_decay|CODING|ENST00000510715|2|1),INTRON(MODIFIER|||||RNF212|nonsense_mediated_decay|CODING|ENST00000511620|2|1),INTRON(MODIFIER|||||RNF212|processed_transcript|CODING|ENST00000505730|3|1),INTRON(MODIFIER|||||RNF212|retained_intron|CODING|ENST00000454487|2|1),UPSTREAM(MODIFIER|||||RNF212|retained_intron|CODING|ENST00000512552||1),UPSTREAM(MODIFIER|||||RP11-20I20.1|processed_pseudogene|NON_CODING|ENST00000513176||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	44:0:0:0:0,0:0,0:44,45:0,0	104:4:0:0:9,11:1,1:90,97:0,0
4	1096704	.	T	C	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||232|RNF212|protein_coding|CODING|ENST00000382968|2|1),INTRON(MODIFIER||||273|RNF212|protein_coding|CODING|ENST00000333673|2|1),INTRON(MODIFIER||||297|RNF212|protein_coding|CODING|ENST00000433731|2|1),INTRON(MODIFIER|||||RNF212|nonsense_mediated_decay|CODING|ENST00000506730|1|1),INTRON(MODIFIER|||||RNF212|nonsense_mediated_decay|CODING|ENST00000508428|1|1),INTRON(MODIFIER|||||RNF212|nonsense_mediated_decay|CODING|ENST00000510715|2|1),INTRON(MODIFIER|||||RNF212|nonsense_mediated_decay|CODING|ENST00000511620|2|1),INTRON(MODIFIER|||||RNF212|processed_transcript|CODING|ENST00000505730|3|1),INTRON(MODIFIER|||||RNF212|retained_intron|CODING|ENST00000454487|2|1),UPSTREAM(MODIFIER|||||RNF212|retained_intron|CODING|ENST00000512552||1),UPSTREAM(MODIFIER|||||RP11-20I20.1|processed_pseudogene|NON_CODING|ENST00000513176||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	43:0:0:0:0,0:0,0:1,1:42,43	105:3:0:0:0,1:9,9:2,3:91,97
4	1277183	rs12644244	G	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER|||||CTBP1-AS1|antisense|NON_CODING|ENST00000578730|1|1);RSPOS=1277183;dbSNPBuildID=120;SSR=0;SAO=0;VP=050100000001040502000100;WGT=1;VC=SNV;SLO;VLD;HD;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	43:1:0:0:0,1:0,0:42,48:0,0	124:4:0:0:9,12:0,0:111,119:0,0
4	1421322	rs112268576	T	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=1421322;dbSNPBuildID=132;SSR=0;SAO=0;VP=050000000001000002000100;WGT=1;VC=SNV;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	28:1:0:0:0,0:0,2:0,0:27,63	66:4:0:0:0,1:11,22:0,0:51,125
4	1616772	.	C	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	71:0:0:0:0,0:71,72:0,0:0,0	99:1:0:0:0,0:94,98:0,0:4,4
4	1617377	.	A	G	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=AA->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	58:1:0:0:56,57:0,0:1,2:0,0	117:3:0:0:106,108:1,1:7,8:0,0
4	2714786	.	T	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1211|FAM193A|protein_coding|CODING|ENST00000505311|17|1),INTRON(MODIFIER||||1211|FAM193A|protein_coding|CODING|ENST00000545951|17|1),INTRON(MODIFIER||||1224|FAM193A|protein_coding|CODING|ENST00000382839|17|1),INTRON(MODIFIER||||1246|FAM193A|protein_coding|CODING|ENST00000502458|18|1),INTRON(MODIFIER||||1265|FAM193A|protein_coding|CODING|ENST00000324666|18|1),INTRON(MODIFIER|||||FAM193A|nonsense_mediated_decay|CODING|ENST00000512465|17|1),INTRON(MODIFIER|||||FAM193A|nonsense_mediated_decay|CODING|ENST00000513898|17|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:4:0:0:0,0:0,0:0,1:27,31	72:3:0:0:0,0:5,5:0,1:64,67
4	3582237	rs111909209	C	T	.	PASS	NT=ref;QSS=24;QSS_NT=24;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||175|RP3-368B9.1|protein_coding|CODING|ENST00000404649|1|1),INTRON(MODIFIER||||194|RP3-368B9.1|protein_coding|CODING|ENST00000514422|1|1),INTRON(MODIFIER|||||RP3-368B9.1|retained_intron|CODING|ENST00000502775|1|1);RSPOS=3582237;dbSNPBuildID=132;SSR=0;SAO=0;VP=050100080005000102000100;GENEINFO=FLJ35424:285492;WGT=1;VC=SNV;SLO;INT;ASP;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	62:4:0:0:0,0:58,75:0,0:0,0	163:10:0:0:0,0:143,180:0,0:10,13
4	3601493	.	G	A	.	PASS	NT=ref;QSS=37;QSS_NT=37;SGT=GG->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	90:5:0:0:0,1:0,0:84,91:1,1	236:19:0:0:9,15:0,0:207,228:1,2
4	3890275	.	G	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||OR4D12P|processed_pseudogene|NON_CODING|ENST00000505943||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:2:0:0:0,0:0,0:32,36:0,0	113:2:0:0:9,19:0,0:102,108:0,0
4	3903332	rs62289208	C	A	.	PASS	NT=ref;QSS=23;QSS_NT=23;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||OR7E84P|processed_pseudogene|NON_CODING|ENST00000398413||1),INTERGENIC(MODIFIER||||||||||1);RSPOS=3903332;dbSNPBuildID=129;SSR=1;SAO=0;VP=050000000009040002000140;WGT=1;VC=SNV;CFL;VLD;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	49:0:0:0:0,0:49,49:0,0:0,0	112:0:0:0:8,11:103,103:1,1:0,0
4	4068404	.	C	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:0:0:0:0,0:31,31:0,0:0,0	136:1:0:0:0,0:116,119:0,0:19,22
4	4068420	rs200920094	G	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=4068420;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:0:0:0:0,0:0,0:32,32:0,0	136:4:0:0:11,15:0,0:121,126:0,0
4	6896974	.	T	C	.	PASS	NT=ref;QSS=23;QSS_NT=23;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	47:1:0:0:0,0:0,0:0,0:46,47	84:1:0:0:0,0:7,8:0,0:76,76
4	7102802	.	G	T	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||RP11-367J11.4|processed_transcript|NON_CODING|ENST00000501888||1),INTRON(MODIFIER|||||RP11-367J11.3|processed_transcript|NON_CODING|ENST00000499242|1|1),INTRON(MODIFIER|||||RP11-367J11.3|processed_transcript|NON_CODING|ENST00000504402|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	45:0:0:0:0,0:0,0:45,46:0,0	121:1:0:0:0,0:0,1:107,107:13,13
4	7124372	.	A	G	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	45:0:0:0:44,44:1,1:0,0:0,0	94:3:0:0:85,88:0,0:6,7:0,0
4	7124395	.	G	A	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	43:0:0:0:0,0:0,0:43,44:0,0	88:3:0:0:7,7:0,0:78,83:0,0
4	7732661	.	G	C	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1002|SORCS2|protein_coding|CODING|ENST00000329016|23|1),INTRON(MODIFIER||||1159|SORCS2|protein_coding|CODING|ENST00000507866|23|1),UPSTREAM(MODIFIER||||101|SORCS2|protein_coding|CODING|ENST00000505529||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:0:0:0:0,0:0,0:36,36:0,0	101:1:0:0:0,0:10,10:90,91:0,0
4	8156221	rs112916124	A	C	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||346|ABLIM2|protein_coding|CODING|ENST00000318888|1|1),INTRON(MODIFIER||||470|ABLIM2|protein_coding|CODING|ENST00000428004|1|1),INTRON(MODIFIER||||521|ABLIM2|protein_coding|CODING|ENST00000407564|1|1),INTRON(MODIFIER||||531|ABLIM2|protein_coding|CODING|ENST00000361737|1|1),INTRON(MODIFIER||||531|ABLIM2|protein_coding|CODING|ENST00000546334|1|1),INTRON(MODIFIER||||559|ABLIM2|protein_coding|CODING|ENST00000505872|1|1),INTRON(MODIFIER||||571|ABLIM2|protein_coding|CODING|ENST00000545242|1|1),INTRON(MODIFIER||||572|ABLIM2|protein_coding|CODING|ENST00000361581|1|1),INTRON(MODIFIER||||573|ABLIM2|protein_coding|CODING|ENST00000296372|1|1),INTRON(MODIFIER||||611|ABLIM2|protein_coding|CODING|ENST00000341937|1|1),INTRON(MODIFIER||||645|ABLIM2|protein_coding|CODING|ENST00000447017|1|1),INTRON(MODIFIER|||||ABLIM2|processed_transcript|CODING|ENST00000502800|1|1);RSPOS=8156221;dbSNPBuildID=132;SSR=0;SAO=0;VP=050000080001000102000100;GENEINFO=ABLIM2:84448;WGT=1;VC=SNV;INT;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:0:0:0:35,35:0,0:0,0:0,0	89:2:0:0:82,88:5,6:0,0:0,0
4	8844043	.	T	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=DOWNSTREAM(MODIFIER||||170|HMX1|protein_coding|CODING|ENST00000506970||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:2:0:0:0,1:0,1:1,2:30,33	111:6:0:0:0,0:5,5:3,4:97,107
4	8844479	.	A	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=AA->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=DOWNSTREAM(MODIFIER||||170|HMX1|protein_coding|CODING|ENST00000506970||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:2:0:0:31,37:0,0:0,1:0,0	132:7:0:0:115,134:0,0:10,12:0,0
4	8992074	.	A	G	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=AA->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||RP11-747H12.4|processed_pseudogene|NON_CODING|ENST00000510116||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	50:0:0:0:49,49:0,0:0,1:1,1	105:0:0:0:96,96:0,0:8,10:1,1
4	8992101	.	A	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=AA->AC;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||RP11-747H12.4|processed_pseudogene|NON_CODING|ENST00000510116||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:1:0:0:38,39:0,1:0,0:0,0	103:1:0:0:96,96:6,9:0,0:0,0
4	9042369	.	T	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	23:0:0:0:0,0:0,0:0,0:23,23	59:3:0:0:0,0:8,11:0,0:48,51
4	9524110	rs199999427	G	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||RP11-1396O13.22|processed_pseudogene|NON_CODING|ENST00000509725||1),INTERGENIC(MODIFIER||||||||||1);RSPOS=9524110;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:0:0:0:0,0:0,0:34,34:0,0	91:0:0:0:7,9:0,0:84,84:0,0
4	9587076	.	G	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||RP11-264E23.1|processed_pseudogene|NON_CODING|ENST00000505417||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:0:0:0:0,0:1,1:32,32:1,1	101:2:0:0:8,13:0,0:91,93:0,0
4	10476893	.	G	A	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||RP11-136I13.2|processed_pseudogene|NON_CODING|ENST00000509222||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:0:0:0:0,0:0,0:35,35:0,0	98:0:0:0:9,9:0,0:89,90:0,0
4	10925611	.	T	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:1:0:0:0,0:0,0:0,0:29,30	109:1:0:0:0,0:13,13:1,1:94,95
4	11003989	.	A	G	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	41:0:0:0:41,41:0,0:0,0:0,0	94:1:0:0:87,88:0,0:6,6:0,0
4	11109957	.	T	C	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:0:0:0:0,0:0,0:0,0:38,38	100:1:0:0:0,0:7,7:1,1:91,92
4	11241223	.	T	G	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	26:0:0:0:0,0:0,0:0,0:26,30	58:0:0:0:0,0:0,0:10,10:48,56
4	11578553	.	A	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:0:0:0:33,33:0,0:0,0:0,0	102:1:0:0:90,91:0,0:0,0:11,11
4	11700128	.	G	T	.	PASS	NT=ref;QSS=23;QSS_NT=23;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-281P23.2|lincRNA|NON_CODING|ENST00000510095|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	46:1:0:0:0,1:0,0:45,45:0,0	97:0:0:0:0,0:0,0:91,91:6,6
4	12013861	.	C	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||AC097452.1|miRNA|NON_CODING|ENST00000582396||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:0:0:0:0,0:33,33:0,0:0,0	113:2:0:0:0,0:98,99:0,0:13,14
4	12790355	.	C	T	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	41:0:0:0:0,0:41,41:0,0:0,0	103:1:0:0:0,0:90,91:0,0:12,12
4	14213661	.	T	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER|||||RP11-669M16.1|lincRNA|NON_CODING|ENST00000514863|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:0:0:0:0,0:0,2:0,0:40,42	100:3:0:0:0,0:6,8:0,0:91,98
4	14243927	.	G	A	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-669M16.1|lincRNA|NON_CODING|ENST00000505628|2|1),INTRON(MODIFIER|||||RP11-669M16.1|lincRNA|NON_CODING|ENST00000514863|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:0:0:0:0,0:0,0:39,39:1,1	91:0:0:0:6,6:0,0:85,85:0,0
4	17647528	.	C	A	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1060|FAM184B|protein_coding|CODING|ENST00000265018|12|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:0:0:0:0,0:40,40:0,0:0,0	116:0:0:0:6,6:110,114:0,0:0,0
4	18101786	.	T	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:0:0:0:0,0:0,0:0,0:32,32	100:0:0:0:0,0:12,12:0,0:88,89
4	19086682	.	C	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:0:0:0:0,0:30,32:0,0:0,0	114:2:0:0:0,0:104,106:8,8:0,0
4	20119626	.	A	C	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:1:0:0:37,38:0,0:0,0:0,0	99:0:0:0:86,86:13,13:0,0:0,0
4	20164464	.	G	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:1:0:0:0,0:0,0:31,32:0,0	103:1:0:0:0,0:5,6:96,97:1,1
4	20498366	.	G	C	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1521|SLIT2|protein_coding|CODING|ENST00000503823|9|1),INTRON(MODIFIER||||1525|SLIT2|protein_coding|CODING|ENST00000503837|10|1),INTRON(MODIFIER||||1529|SLIT2|protein_coding|CODING|ENST00000504154|9|1),INTRON(MODIFIER||||1542|SLIT2|protein_coding|CODING|ENST00000273739|10|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:0:0:0:0,0:0,0:40,40:0,0	118:2:0:0:0,1:10,11:106,107:0,0
4	22927804	.	C	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	46:0:0:0:0,0:45,45:0,0:1,1	112:3:0:0:0,0:97,99:0,0:12,13
4	26283182	.	A	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||228|RBPJ|protein_coding|CODING|ENST00000510778|1|1),INTRON(MODIFIER||||93|RBPJ|protein_coding|CODING|ENST00000512351|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	44:0:0:0:43,43:1,1:0,0:0,0	102:2:0:0:91,93:9,9:0,0:0,0
4	26586679	.	G	C	.	PASS	NT=ref;QSS=25;QSS_NT=25;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||222|TBC1D19|protein_coding|CODING|ENST00000505206|1|1),INTRON(MODIFIER||||266|TBC1D19|protein_coding|CODING|ENST00000512840|1|1),INTRON(MODIFIER||||461|TBC1D19|protein_coding|CODING|ENST00000511789|1|1),INTRON(MODIFIER||||526|TBC1D19|protein_coding|CODING|ENST00000264866|1|1),INTRON(MODIFIER||||67|TBC1D19|protein_coding|CODING|ENST00000513455|1|1),INTRON(MODIFIER|||||TBC1D19|processed_transcript|CODING|ENST00000504442|1|1),INTRON(MODIFIER|||||TBC1D19|processed_transcript|CODING|ENST00000515568|1|1),INTRON(MODIFIER|||||TBC1D19|retained_intron|CODING|ENST00000502873|1|1),UTR_5_PRIME(MODIFIER||||116|TBC1D19|protein_coding|CODING|ENST00000513596|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	49:0:0:0:0,0:0,0:49,49:0,0	112:1:0:0:0,0:12,13:99,99:0,0
4	28741896	.	T	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:2:0:0:0,0:0,0:0,0:27,29	95:2:0:0:7,8:0,0:0,0:86,93
4	30279686	.	T	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:0:0:0:0,0:0,0:0,0:30,30	113:0:0:0:0,0:7,7:0,0:106,107
4	30300662	.	G	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:0:0:0:0,0:0,0:34,34:0,0	110:0:0:0:4,4:0,0:105,105:1,1
4	30795883	.	T	A	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1255|PCDH7|protein_coding|CODING|ENST00000543491|1|1),UPSTREAM(MODIFIER|||||RP11-619J20.1|antisense|NON_CODING|ENST00000509136||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	44:0:0:0:0,0:0,0:0,0:44,44	101:0:0:0:9,9:0,0:0,0:92,92
4	30982928	.	A	G	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1255|PCDH7|protein_coding|CODING|ENST00000543491|2|1),INTRON(MODIFIER|||||PCDH7|processed_transcript|CODING|ENST00000509759|1|1),INTRON(MODIFIER|||||PCDH7|processed_transcript|CODING|ENST00000509925|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:0:0:0:31,31:0,0:0,0:0,0	103:0:0:0:93,93:1,1:9,9:0,0
4	31199950	.	C	T	.	PASS	NT=ref;QSS=27;QSS_NT=27;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-617I14.1|lincRNA|NON_CODING|ENST00000515292|4|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	54:0:0:0:0,0:54,54:0,0:0,0	99:2:0:0:0,0:88,89:0,0:9,10
4	32036500	.	T	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-734I18.1|lincRNA|NON_CODING|ENST00000513211|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:0:0:0:0,0:0,0:0,0:34,34	101:2:0:0:0,0:4,6:0,0:95,97
4	32238185	rs190708536	A	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=32238185;GMAF=0.0522;dbSNPBuildID=135;SSR=0;SAO=0;VP=050000000005000016000100;WGT=1;VC=SNV;ASP;KGPhase1;KGPROD;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:1:0:0:33,34:0,0:0,0:0,0	103:0:0:0:96,96:0,0:1,1:6,6
4	32566447	.	C	A	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:0:0:0:0,0:34,34:0,0:0,0	95:0:0:0:7,7:88,88:0,0:0,0
4	32708865	.	T	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:0:0:0:0,0:0,0:0,0:31,31	103:1:0:0:8,8:1,1:0,0:93,94
4	33388346	.	A	T	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:0:0:0:36,36:0,0:0,0:0,0	99:1:0:0:90,91:0,0:0,0:8,8
4	33685502	.	G	C	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:0:0:0:0,0:0,0:33,33:0,0	105:0:0:0:0,0:12,12:92,92:1,1
4	33986536	rs184531160	C	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||RP11-79E3.2|processed_transcript|NON_CODING|ENST00000505326||1),INTRON(MODIFIER|||||RP11-79E3.3|lincRNA|NON_CODING|ENST00000505018|1|1),INTRON(MODIFIER|||||RP11-79E3.3|lincRNA|NON_CODING|ENST00000512581|1|1);RSPOS=33986536;GMAF=0.0055;dbSNPBuildID=135;SSR=0;SAO=0;VP=050000000005000014000100;WGT=1;VC=SNV;ASP;KGPhase1;KGPROD	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:0:0:0:0,0:32,33:0,0:0,0	112:1:0:0:0,0:103,104:0,0:8,8
4	34055830	.	A	C	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	44:0:0:0:44,44:0,0:0,0:0,0	114:0:0:0:107,107:7,7:0,0:0,0
4	34287670	.	T	A	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:0:0:0:0,0:0,0:0,0:35,35	100:2:0:0:8,8:0,0:0,0:90,93
4	35275981	.	C	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	26:0:0:0:0,0:26,26:0,0:0,0	106:0:0:0:0,0:91,91:0,0:15,15
4	35348370	.	G	A	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:0:0:0:0,0:0,0:35,35:0,0	97:2:0:0:9,10:0,0:86,87:0,0
4	36993280	.	C	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:1:0:0:0,0:31,32:0,0:0,0	105:1:0:0:6,6:98,99:0,0:0,0
4	37621045	.	C	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||271|RELL1|protein_coding|CODING|ENST00000314117|6|1),INTRON(MODIFIER||||271|RELL1|protein_coding|CODING|ENST00000454158|6|1),INTRON(MODIFIER||||38|C4orf19|protein_coding|CODING|ENST00000508175|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	43:0:0:0:0,0:43,43:0,0:0,0	103:1:0:0:0,0:95,96:0,0:7,8
4	39056927	.	C	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||568|KLHL5|protein_coding|CODING|ENST00000508137|1|1),INTRON(MODIFIER||||709|KLHL5|protein_coding|CODING|ENST00000261425|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:0:0:0:0,0:34,34:0,0:0,0	114:0:0:0:0,0:108,108:0,0:6,6
4	43933740	.	A	G	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:1:0:0:39,39:0,0:0,0:0,1	99:1:0:0:93,94:0,0:5,5:0,0
4	45356818	.	T	C	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:0:0:0:0,0:0,0:0,0:37,37	104:2:0:0:0,0:5,5:0,0:97,100
4	45649653	.	C	T	.	PASS	NT=ref;QSS=23;QSS_NT=23;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	45:0:0:0:0,0:45,45:0,0:0,0	113:1:0:0:0,0:102,103:0,0:10,10
4	46193681	.	C	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	25:1:0:0:0,0:24,24:0,1:0,0	90:1:0:0:13,13:76,77:0,0:0,0
4	46584327	.	C	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:1:0:0:0,0:32,33:0,0:0,0	95:1:0:0:0,0:86,86:0,0:8,9
4	49024281	.	G	A	.	PASS	NT=ref;QSS=23;QSS_NT=23;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||CWH43|retained_intron|CODING|ENST00000506221||1),INTRON(MODIFIER||||672|CWH43|protein_coding|CODING|ENST00000513409|9|1),INTRON(MODIFIER||||699|CWH43|protein_coding|CODING|ENST00000226432|9|1),INTRON(MODIFIER|||||CWH43|nonsense_mediated_decay|CODING|ENST00000514053|7|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	45:0:0:0:0,0:0,0:45,45:0,0	98:2:0:0:7,7:0,0:89,91:0,0
4	49126130	.	C	G	.	PASS	NT=ref;QSS=23;QSS_NT=23;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	90:2:1:0:0,0:86,232:1,6:1,1	208:18:0:0:1,4:176,485:11,35:2,4
4	49130481	.	C	G	.	PASS	NT=ref;QSS=23;QSS_NT=23;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	73:10:12:0:0,0:61,214:1,6:1,2	184:26:24:0:0,0:149,477:8,24:1,15
4	49130556	.	C	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	48:8:7:0:0,0:40,109:0,0:0,3	121:13:13:0:0,1:100,256:0,1:8,14
4	49134827	.	T	C	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	51:7:0:0:0,0:0,1:0,1:44,68	126:22:2:0:1,6:8,14:0,2:95,171
4	49139979	rs201246726	T	A	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=49139979;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	66:22:0:0:1,4:0,0:0,0:43,152	133:39:1:0:14,30:0,0:0,0:80,309
4	49147501	.	A	T	.	PASS	NT=ref;QSS=29;QSS_NT=29;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	104:14:2:0:87,279:1,6:1,5:1,4	305:48:11:0:238,724:5,13:0,3:14,37
4	49154949	.	G	A	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	96:13:0:0:0,2:0,0:78,167:5,7	239:27:1:0:6,13:0,1:196,364:10,20
4	49155057	.	T	A	.	PASS	NT=ref;QSS=38;QSS_NT=38;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	108:12:3:0:1,7:0,3:0,1:95,250	287:19:4:0:9,22:0,7:1,4:258,592
4	49171939	.	C	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	47:1:0:0:0,0:46,52:0,0:0,2	136:3:0:0:0,0:127,152:0,0:6,10
4	49200208	.	G	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=DOWNSTREAM(MODIFIER|||||AC118282.2|miRNA|NON_CODING|ENST00000408820||1),DOWNSTREAM(MODIFIER|||||AC118282.3|miRNA|NON_CODING|ENST00000410505||1),DOWNSTREAM(MODIFIER|||||RP11-1281K21.2|processed_pseudogene|NON_CODING|ENST00000512142||1),INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||AC118282.1|miRNA|NON_CODING|ENST00000408488||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	69:14:0:0:0,7:0,0:55,108:0,0	168:46:0:0:10,23:0,0:112,255:0,0
4	49200236	.	G	A	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=DOWNSTREAM(MODIFIER|||||AC118282.2|miRNA|NON_CODING|ENST00000408820||1),DOWNSTREAM(MODIFIER|||||AC118282.3|miRNA|NON_CODING|ENST00000410505||1),DOWNSTREAM(MODIFIER|||||RP11-1281K21.2|processed_pseudogene|NON_CODING|ENST00000512142||1),EXON(MODIFIER|||||AC118282.1|miRNA|NON_CODING|ENST00000408488|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	76:4:0:0:0,7:0,0:72,115:0,0	166:14:0:0:10,23:0,1:142,255:0,0
4	49233925	.	A	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||RP11-1281K21.5|processed_pseudogene|NON_CODING|ENST00000503930||1),DOWNSTREAM(MODIFIER|||||SNX18P23|processed_pseudogene|NON_CODING|ENST00000510867||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	60:0:0:0:60,63:0,0:0,0:0,1	150:3:0:0:137,144:0,0:0,1:10,17
4	49248821	rs7377772	A	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||RP11-1281K21.6|processed_pseudogene|NON_CODING|ENST00000514812||1),EXON(MODIFIER|||||RP11-1281K21.7|processed_pseudogene|NON_CODING|ENST00000510932|1|1),UPSTREAM(MODIFIER|||||RP11-1281K21.1|processed_pseudogene|NON_CODING|ENST00000428211||1),UPSTREAM(MODIFIER|||||RP11-1281K21.1|processed_pseudogene|NON_CODING|ENST00000506408||1);RSPOS=49248821;dbSNPBuildID=116;SSR=0;SAO=0;VP=050000000001040002000100;WGT=1;VC=SNV;VLD;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	74:0:0:0:73,116:0,0:0,0:1,1	231:1:0:0:218,335:1,1:0,0:11,14
4	49313027	.	T	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	20:0:0:0:0,0:0,0:0,0:20,36	46:2:0:0:7,10:1,3:0,1:36,55
4	49315414	.	G	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->CG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	54:1:0:0:0,0:0,2:53,57:0,0	116:4:0:0:0,1:11,15:101,111:0,0
4	49519712	.	G	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=DOWNSTREAM(MODIFIER|||||RP11-241F15.4|processed_pseudogene|NON_CODING|ENST00000509521||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	96:10:0:0:0,4:1,1:85,101:0,0	155:17:0:0:8,15:0,1:130,168:0,0
4	49519715	.	G	A	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=GG->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=DOWNSTREAM(MODIFIER|||||RP11-241F15.4|processed_pseudogene|NON_CODING|ENST00000509521||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	97:10:0:0:0,3:0,1:87,103:0,0	153:15:0:0:8,15:0,0:130,167:0,0
4	49529971	.	T	A	.	PASS	NT=ref;QSS=28;QSS_NT=28;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||RP11-241F15.5|processed_pseudogene|NON_CODING|ENST00000504529||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	67:0:0:0:0,0:0,0:0,0:67,86	163:3:0:0:10,16:0,1:1,1:149,176
4	49638535	.	A	G	.	PASS	NT=ref;QSS=29;QSS_NT=29;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	67:3:0:0:64,86:0,0:0,1:0,0	153:9:0:0:132,198:0,0:12,17:0,1
4	49655076	rs202024137	C	T	.	PASS	NT=ref;QSS=27;QSS_NT=27;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=49655076;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	88:32:0:0:2,8:54,112:0,1:0,4	214:65:0:0:4,14:132,254:3,10:10,30
4	52687478	.	T	A	.	PASS	NT=ref;QSS=28;QSS_NT=28;SGT=TT->AT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	84:6:1:0:0,7:0,0:0,0:78,126	199:21:0:0:8,41:0,2:0,0:170,339
4	54744164	rs201843340	G	A	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||849|FIP1L1|protein_coding|CODING|ENST00000507166|12|1);RSPOS=54744164;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	42:0:0:0:0,0:0,0:42,45:0,0	73:1:0:0:8,9:0,0:64,86:0,0
4	54744223	rs199509285	T	C	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||849|FIP1L1|protein_coding|CODING|ENST00000507166|12|1);RSPOS=54744223;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	41:3:0:0:0,0:0,0:0,0:38,47	93:2:0:0:0,0:10,12:1,1:80,118
4	55099200	.	A	C	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=AA->AC;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER||||1089|PDGFRA|protein_coding|CODING|ENST00000257290|1|1),INTRON(MODIFIER||||146|PDGFRA|protein_coding|CODING|ENST00000512143|1|1),INTRON(MODIFIER||||157|PDGFRA|protein_coding|CODING|ENST00000504461|1|1),INTRON(MODIFIER||||158|PDGFRA|protein_coding|CODING|ENST00000503856|1|1),INTRON(MODIFIER||||218|PDGFRA|protein_coding|CODING|ENST00000508170|1|1),INTRON(MODIFIER||||849|FIP1L1|protein_coding|CODING|ENST00000507166|12|1),INTRON(MODIFIER|||||PDGFRA|nonsense_mediated_decay|CODING|ENST00000509490|1|1),INTRON(MODIFIER|||||PDGFRA|retained_intron|CODING|ENST00000509092|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	42:2:0:0:40,41:0,1:0,0:0,0	89:2:0:0:75,75:12,14:0,0:0,0
4	57051049	.	A	T	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1233|KIAA1211|protein_coding|CODING|ENST00000264229|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:0:0:0:40,40:0,0:0,0:0,0	95:0:0:0:86,86:0,0:0,0:9,9
4	57429425	.	A	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||465|THEGL|protein_coding|CODING|ENST00000512175|4|1),INTRON(MODIFIER|||||THEGL|processed_transcript|CODING|ENST00000510716|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:3:0:0:30,33:0,0:0,0:0,0	73:2:0:0:64,65:2,2:0,0:5,6
4	57771685	.	C	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER||||1097|REST|protein_coding|CODING|ENST00000309042||1),UPSTREAM(MODIFIER|||||REST|processed_transcript|CODING|ENST00000503522||1),UPSTREAM(MODIFIER|||||REST|retained_intron|CODING|ENST00000511065||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	27:0:0:0:0,0:27,30:0,0:0,0	74:1:0:0:1,1:63,75:0,0:9,9
4	59318163	.	T	G	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:0:0:0:0,0:0,0:0,0:39,39	93:1:0:0:0,0:0,0:9,9:83,84
4	59719322	.	G	C	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-506N2.1|lincRNA|NON_CODING|ENST00000510371|2|1),INTRON(MODIFIER|||||RP11-506N2.1|lincRNA|NON_CODING|ENST00000510941|3|1),INTRON(MODIFIER|||||RP11-506N2.1|lincRNA|NON_CODING|ENST00000513551|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	43:0:0:0:0,0:0,0:43,43:0,0	112:0:0:0:0,0:10,10:102,103:0,0
4	60082045	.	G	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:0:0:0:0,0:0,0:35,35:0,0	109:0:0:0:1,1:0,0:103,103:5,5
4	60188082	.	C	T	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	44:0:0:0:0,0:44,44:0,0:0,0	100:0:0:0:0,0:90,90:0,0:10,10
4	60298682	.	G	T	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	41:0:0:0:0,0:0,0:41,41:0,0	115:1:0:0:0,0:0,0:108,110:6,6
4	60856577	.	A	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:0:0:0:32,33:0,0:0,0:0,0	95:1:0:0:87,87:0,0:0,0:7,8
4	61557405	.	C	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:0:0:0:0,0:32,32:0,0:0,0	112:0:0:0:0,0:105,105:0,0:7,7
4	61593522	.	A	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:1:0:0:35,36:0,0:0,0:0,0	100:1:0:0:93,94:1,1:0,0:5,5
4	62265702	.	C	A	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1240|LPHN3|protein_coding|CODING|ENST00000512091|2|1),INTRON(MODIFIER||||1469|LPHN3|protein_coding|CODING|ENST00000514591|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	41:1:0:0:0,0:40,41:0,0:0,0	105:3:0:0:6,7:96,96:0,1:0,1
4	63165076	.	G	A	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:0:0:0:0,0:0,0:36,36:0,0	106:1:0:0:8,8:0,0:97,97:0,1
4	63423715	.	C	G	.	PASS	NT=ref;QSS=27;QSS_NT=27;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	46:0:0:0:0,0:46,46:0,0:0,0	87:0:0:0:0,0:74,74:13,13:0,0
4	63461590	.	G	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||AC110810.1|miRNA|NON_CODING|ENST00000585196||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:1:0:0:0,0:0,0:29,30:0,0	98:1:0:0:7,7:0,0:90,91:0,0
4	63523559	.	A	C	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:0:0:0:35,35:0,0:0,0:0,0	113:1:0:0:107,108:5,5:0,0:0,0
4	63670798	.	T	C	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	24:0:0:0:0,0:0,0:0,0:24,24	60:1:0:0:0,0:11,12:0,0:48,48
4	63832060	.	A	G	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:0:0:0:36,36:0,0:0,0:0,0	107:2:0:0:96,97:0,0:9,10:0,0
4	65326802	.	C	T	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:0:0:0:0,0:40,40:0,0:0,0	115:1:0:0:0,0:105,106:0,0:9,9
4	66491880	.	C	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1004|EPHA5|protein_coding|CODING|ENST00000511294|2|1),INTRON(MODIFIER||||1015|EPHA5|protein_coding|CODING|ENST00000354839|2|1),INTRON(MODIFIER||||1037|EPHA5|protein_coding|CODING|ENST00000273854|2|1),INTRON(MODIFIER||||874|EPHA5|protein_coding|CODING|ENST00000432638|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	28:0:0:0:0,0:28,28:0,0:0,0	111:0:0:0:1,1:104,104:1,1:5,5
4	66665653	.	C	G	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:0:0:0:0,0:37,37:0,0:0,0	94:0:0:0:0,0:82,82:12,12:0,0
4	67104084	.	C	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:0:0:0:0,0:31,31:0,0:0,0	99:2:0:0:0,1:88,88:0,0:9,10
4	67206034	.	A	C	.	PASS	NT=ref;QSS=23;QSS_NT=23;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	42:0:0:0:42,42:0,0:0,0:0,0	104:0:0:0:90,90:14,14:0,0:0,0
4	67951585	.	G	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:1:0:0:0,0:0,0:31,32:1,1	106:0:0:0:7,7:0,0:99,99:0,0
4	68099861	.	T	A	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	43:0:0:0:0,0:0,0:0,0:43,43	106:0:0:0:12,12:0,0:0,0:94,94
4	68763346	.	T	A	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-453E17.1|processed_transcript|NON_CODING|ENST00000500538|6|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:0:0:0:0,0:0,0:0,0:37,37	128:1:0:0:9,9:0,0:0,0:118,119
4	69517670	.	A	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||530|UGT2B15|protein_coding|CODING|ENST00000338206|5|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:1:0:0:28,29:0,0:0,0:0,0	112:1:0:0:103,104:0,1:8,8:0,0
4	69736235	rs140441546	A	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=AA->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=69736235;GMAF=0.0769;dbSNPBuildID=134;SSR=0;SAO=0;VP=050000000005000016000100;WGT=1;VC=SNV;ASP;KGPhase1;KGPROD;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:1:0:0:31,34:0,0:0,1:0,0	75:1:0:0:68,76:0,0:6,15:0,0
4	69736264	.	A	T	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:0:0:0:38,39:0,0:0,0:0,0	91:0:0:0:84,90:0,0:0,0:7,8
4	69764425	.	T	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||RP11-468N14.7|unprocessed_pseudogene|NON_CODING|ENST00000511911||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	27:0:0:0:0,0:0,0:0,0:27,27	112:0:0:0:8,8:0,0:0,0:104,104
4	71326732	.	G	A	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||377|MUC7|protein_coding|CODING|ENST00000413702|1|1),INTRON(MODIFIER|||||MUC7|processed_transcript|CODING|ENST00000515308|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:0:0:0:0,0:0,0:37,38:0,0	119:0:0:0:11,11:0,0:108,108:0,0
4	73254237	.	G	C	.	PASS	NT=ref;QSS=23;QSS_NT=23;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1205|ADAMTS3|protein_coding|CODING|ENST00000286657|4|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	44:0:0:0:0,0:0,0:44,44:0,0	93:0:0:0:0,0:10,10:83,83:0,0
4	73579636	rs41374645	G	A	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=73579636;GMAF=0.1319;dbSNPBuildID=127;SSR=0;SAO=0;VP=050100000001050517000100;WGT=1;VC=SNV;SLO;VLD;G5;HD;GNO;KGPhase1;KGPROD;OTHERKG;PH3	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	43:1:0:0:0,0:0,0:42,42:0,0	97:2:0:0:6,6:0,0:89,92:0,0
4	75054415	rs62312489	G	A	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||MTHFD2L|nonsense_mediated_decay|CODING|ENST00000423607||1),INTRON(MODIFIER||||146|MTHFD2L|protein_coding|CODING|ENST00000433372|4|1),INTRON(MODIFIER||||223|MTHFD2L|protein_coding|CODING|ENST00000331145|3|1),INTRON(MODIFIER||||251|MTHFD2L|protein_coding|CODING|ENST00000359107|4|1),INTRON(MODIFIER||||289|MTHFD2L|protein_coding|CODING|ENST00000325278|3|1),INTRON(MODIFIER||||347|MTHFD2L|protein_coding|CODING|ENST00000395759|3|1),INTRON(MODIFIER|||||MTHFD2L|nonsense_mediated_decay|CODING|ENST00000429519|6|1);RSPOS=75054415;dbSNPBuildID=129;SSR=16;SAO=0;VP=05010008000504010e000100;GENEINFO=MTHFD2L:441024;WGT=1;VC=SNV;SLO;INT;ASP;VLD;GNO;KGPilot123;KGPROD;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:0:1:0:0,0:0,0:33,33:0,0	116:5:0:0:14,17:0,0:97,101:0,0
4	76300594	.	A	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-567N4.2|lincRNA|NON_CODING|ENST00000510744|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:0:0:0:34,35:0,0:0,0:0,0	104:2:0:0:92,94:0,0:0,0:10,10
4	76307420	.	C	T	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-567N4.2|lincRNA|NON_CODING|ENST00000510744|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:1:0:0:0,0:36,37:0,0:0,0	83:1:0:0:0,1:76,78:0,0:6,6
4	77259660	.	G	A	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1113|CCDC158|protein_coding|CODING|ENST00000388914|17|1),INTRON(MODIFIER|||||CCDC158|retained_intron|CODING|ENST00000504667|6|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	43:1:0:0:0,0:1,1:41,42:0,0	109:1:0:0:9,9:0,0:99,100:0,0
4	78145625	.	G	A	.	PASS	NT=ref;QSS=26;QSS_NT=26;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||CCNG2|processed_transcript|CODING|ENST00000497512|10|1),INTRON(MODIFIER|||||CCNG2|processed_transcript|CODING|ENST00000514756|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	53:0:0:0:0,0:1,1:52,52:0,0	112:0:0:0:10,10:0,0:102,102:0,0
4	78584816	rs201536805	C	A	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=78584816;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:1:0:0:0,0:36,37:0,0:0,0	86:1:1:0:6,6:79,83:0,0:0,0
4	79629901	rs71629049	T	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=79629901;dbSNPBuildID=130;SSR=0;SAO=0;VP=050100000001000102000100;WGT=1;VC=SNV;SLO;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:1:0:0:0,0:0,0:0,0:34,35	116:1:0:0:0,0:6,6:0,0:109,110
4	80093477	.	C	G	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-438E5.1|antisense|NON_CODING|ENST00000509088|3|1),INTRON(MODIFIER|||||RP11-438E5.1|antisense|NON_CODING|ENST00000510667|2|1),INTRON(MODIFIER|||||RP11-438E5.1|antisense|NON_CODING|ENST00000513153|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:1:0:0:0,0:38,39:0,0:0,0	94:0:0:0:0,0:85,85:9,9:0,0
4	80311325	.	C	G	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	41:0:0:0:0,0:41,41:0,0:0,0	113:0:0:0:0,0:104,104:9,9:0,0
4	81311647	.	A	G	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||233|C4orf22|protein_coding|CODING|ENST00000358105|2|1),INTRON(MODIFIER||||250|C4orf22|protein_coding|CODING|ENST00000508675|2|1),INTRON(MODIFIER|||||C4orf22|nonsense_mediated_decay|CODING|ENST00000513920|2|1),INTRON(MODIFIER|||||C4orf22|nonsense_mediated_decay|CODING|ENST00000514249|2|1),INTRON(MODIFIER|||||C4orf22|processed_transcript|CODING|ENST00000502497|2|1),INTRON(MODIFIER|||||C4orf22|processed_transcript|CODING|ENST00000503883|2|1),INTRON(MODIFIER|||||C4orf22|processed_transcript|CODING|ENST00000512931|2|1),UPSTREAM(MODIFIER|||||RP11-395C17.1|processed_pseudogene|NON_CODING|ENST00000506637||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:1:0:0:36,37:0,0:0,0:0,0	129:3:0:0:120,126:0,0:6,6:0,0
4	81311904	.	T	C	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||233|C4orf22|protein_coding|CODING|ENST00000358105|2|1),INTRON(MODIFIER||||250|C4orf22|protein_coding|CODING|ENST00000508675|2|1),INTRON(MODIFIER|||||C4orf22|nonsense_mediated_decay|CODING|ENST00000513920|2|1),INTRON(MODIFIER|||||C4orf22|nonsense_mediated_decay|CODING|ENST00000514249|2|1),INTRON(MODIFIER|||||C4orf22|processed_transcript|CODING|ENST00000502497|2|1),INTRON(MODIFIER|||||C4orf22|processed_transcript|CODING|ENST00000503883|2|1),INTRON(MODIFIER|||||C4orf22|processed_transcript|CODING|ENST00000512931|2|1),UPSTREAM(MODIFIER|||||RP11-395C17.1|processed_pseudogene|NON_CODING|ENST00000506637||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	44:1:0:0:0,0:0,0:0,1:43,51	122:3:0:0:0,0:12,15:1,1:106,124
4	81911678	.	G	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:1:0:0:1,1:0,0:33,34:0,0	101:2:0:0:0,0:6,7:93,95:0,0
4	83486062	.	G	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER||||120|TMEM150C|protein_coding|CODING|ENST00000508701||1),UPSTREAM(MODIFIER||||249|TMEM150C|protein_coding|CODING|ENST00000449862||1),UPSTREAM(MODIFIER||||249|TMEM150C|protein_coding|CODING|ENST00000515780||1),UPSTREAM(MODIFIER||||66|TMEM150C|protein_coding|CODING|ENST00000454948||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:1:0:0:0,0:0,0:30,31:0,0	89:0:0:0:0,0:0,0:80,80:9,9
4	83967465	rs113227014	G	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||274|COPS4|protein_coding|CODING|ENST00000509317|1|1),INTRON(MODIFIER||||352|COPS4|protein_coding|CODING|ENST00000509093|2|1),INTRON(MODIFIER||||406|COPS4|protein_coding|CODING|ENST00000264389|2|1),INTRON(MODIFIER||||420|COPS4|protein_coding|CODING|ENST00000511653|2|1),INTRON(MODIFIER||||438|COPS4|protein_coding|CODING|ENST00000503682|2|1),INTRON(MODIFIER|||||COPS4|nonsense_mediated_decay|CODING|ENST00000507376|2|1),INTRON(MODIFIER|||||COPS4|processed_transcript|CODING|ENST00000506443|2|1),INTRON(MODIFIER|||||COPS4|processed_transcript|CODING|ENST00000510801|1|1),INTRON(MODIFIER|||||COPS4|processed_transcript|CODING|ENST00000511708|2|1),INTRON(MODIFIER|||||COPS4|retained_intron|CODING|ENST00000511891|2|1);RSPOS=83967465;dbSNPBuildID=132;SSR=0;SAO=0;VP=050100080001000102000100;GENEINFO=COPS4:51138;WGT=1;VC=SNV;SLO;INT;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	62:2:0:0:0,1:0,3:60,89:0,1	178:2:0:0:0,1:9,19:167,236:0,0
4	84028375	.	A	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||115|PLAC8|protein_coding|CODING|ENST00000311507|2|1),INTRON(MODIFIER||||115|PLAC8|protein_coding|CODING|ENST00000411416|2|1),INTRON(MODIFIER||||115|PLAC8|protein_coding|CODING|ENST00000426923|2|1),INTRON(MODIFIER||||115|PLAC8|protein_coding|CODING|ENST00000505406|5|1),INTRON(MODIFIER||||58|PLAC8|protein_coding|CODING|ENST00000509973|1|1),INTRON(MODIFIER|||||PLAC8|processed_transcript|CODING|ENST00000515389|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:2:0:0:29,31:0,0:0,0:0,0	96:4:0:0:86,91:6,6:0,0:0,0
4	84103797	.	C	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:1:0:0:0,0:31,47:0,0:0,1	61:4:0:0:1,2:49,80:1,3:6,8
4	84769233	.	T	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-8L2.1|processed_transcript|NON_CODING|ENST00000513489|4|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	27:0:0:0:0,0:0,0:0,0:27,27	100:1:0:0:0,0:7,7:0,0:92,93
4	84799383	.	G	A	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-8L2.1|processed_transcript|NON_CODING|ENST00000513489|4|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	41:0:0:0:0,0:0,0:41,41:0,0	111:0:0:0:8,8:1,1:102,103:0,0
4	85134028	.	G	T	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-8L2.1|processed_transcript|NON_CODING|ENST00000508406|4|1),INTRON(MODIFIER|||||RP11-8L2.1|processed_transcript|NON_CODING|ENST00000513489|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	43:0:0:0:0,0:0,0:43,44:0,0	99:1:0:0:0,0:0,0:90,91:8,8
4	85371571	.	C	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:0:0:0:0,0:31,32:1,1:0,0	128:3:0:0:0,0:114,116:0,0:11,12
4	87592347	.	T	G	.	PASS	NT=ref;QSS=25;QSS_NT=25;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||138|PTPN13|protein_coding|CODING|ENST00000507902|2|1),INTRON(MODIFIER||||227|PTPN13|protein_coding|CODING|ENST00000502971|2|1),INTRON(MODIFIER||||2294|PTPN13|protein_coding|CODING|ENST00000316707|2|1),INTRON(MODIFIER||||2466|PTPN13|protein_coding|CODING|ENST00000427191|2|1),INTRON(MODIFIER||||2485|PTPN13|protein_coding|CODING|ENST00000411767|2|1),INTRON(MODIFIER||||2490|PTPN13|protein_coding|CODING|ENST00000436978|2|1),INTRON(MODIFIER||||2490|PTPN13|protein_coding|CODING|ENST00000511467|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	50:0:0:0:0,0:0,0:0,0:50,50	109:0:0:0:0,0:0,0:11,11:98,98
4	88536982	.	T	C	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=TT->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER|||||RP11-742B18.1|antisense|NON_CODING|ENST00000506480|3|1),SYNONYMOUS_CODING(LOW|SILENT|aaT/aaC|N1056|1301|DSPP|protein_coding|CODING|ENST00000282478|4|1),SYNONYMOUS_CODING(LOW|SILENT|aaT/aaC|N1056|1301|DSPP|protein_coding|CODING|ENST00000399271|5|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	44:0:0:0:0,0:0,1:0,0:44,48	122:3:0:0:0,0:14,18:2,3:103,109
4	88537564	.	T	C	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-742B18.1|antisense|NON_CODING|ENST00000506480|3|1),SYNONYMOUS_CODING(LOW|SILENT|agT/agC|S1250|1301|DSPP|protein_coding|CODING|ENST00000282478|4|1),SYNONYMOUS_CODING(LOW|SILENT|agT/agC|S1250|1301|DSPP|protein_coding|CODING|ENST00000399271|5|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	47:1:0:0:0,0:0,1:0,0:46,47	96:0:0:0:0,0:5,7:0,0:91,95
4	88654887	.	C	A	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-742B18.1|antisense|NON_CODING|ENST00000503993|1|1),UPSTREAM(MODIFIER|||||RP11-742B18.1|antisense|NON_CODING|ENST00000506480||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	44:0:0:0:0,0:44,44:0,0:0,0	116:3:0:0:11,11:102,105:0,0:0,0
4	88741531	.	A	G	.	PASS	NT=ref;QSS=24;QSS_NT=24;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER||||525|MEPE|protein_coding|CODING|ENST00000424957||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	47:0:0:0:47,48:0,0:0,0:0,0	119:4:0:0:106,109:0,0:8,9:1,1
4	88993819	.	G	A	.	PASS	NT=ref;QSS=24;QSS_NT=24;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||386|PKD2|protein_coding|CODING|ENST00000502363|6|1),INTRON(MODIFIER||||386|PKD2|protein_coding|CODING|ENST00000508588|8|1),INTRON(MODIFIER||||968|PKD2|protein_coding|CODING|ENST00000237596|13|1),INTRON(MODIFIER|||||PKD2|processed_transcript|CODING|ENST00000511337|6|1),INTRON(MODIFIER|||||PKD2|retained_intron|CODING|ENST00000512858|5|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	49:1:0:0:0,0:1,1:47,48:0,0	93:1:0:0:7,7:0,0:85,86:0,0
4	90849214	.	G	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1228|MMRN1|protein_coding|CODING|ENST00000264790|5|1),INTRON(MODIFIER||||1228|MMRN1|protein_coding|CODING|ENST00000394980|6|1),INTRON(MODIFIER||||531|MMRN1|protein_coding|CODING|ENST00000394981|6|1),INTRON(MODIFIER||||970|MMRN1|protein_coding|CODING|ENST00000508372|5|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:0:0:0:0,0:0,0:34,34:0,0	103:2:0:0:0,0:0,0:95,96:6,7
4	91001285	.	G	A	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:0:0:0:0,0:0,0:38,38:0,0	97:1:0:0:6,6:0,0:90,91:0,0
4	91393466	.	G	T	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||FAM190A|retained_intron|CODING|ENST00000508086||1),DOWNSTREAM(MODIFIER|||||FAM190A|retained_intron|CODING|ENST00000514352||1),INTRON(MODIFIER||||677|FAM190A|protein_coding|CODING|ENST00000432775|5|1),INTRON(MODIFIER||||900|FAM190A|protein_coding|CODING|ENST00000333691|5|1),INTRON(MODIFIER||||900|FAM190A|protein_coding|CODING|ENST00000509176|5|1),INTRON(MODIFIER|||||FAM190A|nonsense_mediated_decay|CODING|ENST00000505073|5|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:0:0:0:0,0:0,0:38,38:0,0	100:2:0:0:0,0:0,0:90,91:8,9
4	91453761	.	A	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||677|FAM190A|protein_coding|CODING|ENST00000432775|5|1),INTRON(MODIFIER||||900|FAM190A|protein_coding|CODING|ENST00000333691|5|1),INTRON(MODIFIER||||900|FAM190A|protein_coding|CODING|ENST00000509176|5|1),INTRON(MODIFIER|||||FAM190A|nonsense_mediated_decay|CODING|ENST00000505073|5|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:0:0:0:33,34:0,0:0,0:0,0	87:1:0:0:80,81:0,0:2,2:4,4
4	91495286	.	T	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||677|FAM190A|protein_coding|CODING|ENST00000432775|5|1),INTRON(MODIFIER||||900|FAM190A|protein_coding|CODING|ENST00000333691|5|1),INTRON(MODIFIER||||900|FAM190A|protein_coding|CODING|ENST00000509176|5|1),INTRON(MODIFIER|||||FAM190A|nonsense_mediated_decay|CODING|ENST00000505073|5|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:1:0:0:0,0:0,0:0,0:30,31	122:3:0:0:0,0:7,7:0,0:112,115
4	91529075	.	A	T	.	PASS	NT=ref;QSS=25;QSS_NT=25;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||677|FAM190A|protein_coding|CODING|ENST00000432775|5|1),INTRON(MODIFIER||||900|FAM190A|protein_coding|CODING|ENST00000333691|5|1),INTRON(MODIFIER||||900|FAM190A|protein_coding|CODING|ENST00000509176|5|1),INTRON(MODIFIER|||||FAM190A|nonsense_mediated_decay|CODING|ENST00000505073|5|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	47:1:0:0:46,46:0,1:0,0:0,0	113:0:0:0:98,98:0,0:0,0:15,15
4	91603880	.	T	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||677|FAM190A|protein_coding|CODING|ENST00000432775|6|1),INTRON(MODIFIER||||69|FAM190A|protein_coding|CODING|ENST00000503421|1|1),INTRON(MODIFIER||||900|FAM190A|protein_coding|CODING|ENST00000333691|6|1),INTRON(MODIFIER||||900|FAM190A|protein_coding|CODING|ENST00000509176|6|1),INTRON(MODIFIER|||||FAM190A|nonsense_mediated_decay|CODING|ENST00000505073|7|1),INTRON(MODIFIER|||||FAM190A|nonsense_mediated_decay|CODING|ENST00000509109|1|1),INTRON(MODIFIER|||||FAM190A|nonsense_mediated_decay|CODING|ENST00000510519|1|1),INTRON(MODIFIER|||||FAM190A|processed_transcript|CODING|ENST00000504150|1|1),UPSTREAM(MODIFIER|||||RP11-11N6.1|processed_pseudogene|NON_CODING|ENST00000513074||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:1:0:0:0,0:0,0:0,0:32,33	88:0:0:0:10,10:0,0:1,1:77,78
4	92615902	.	G	T	.	PASS	NT=ref;QSS=25;QSS_NT=25;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	50:1:0:0:0,0:0,0:49,50:0,0	102:1:0:0:0,0:0,0:95,97:6,6
4	93660148	.	A	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1007|GRID2|protein_coding|CODING|ENST00000282020|2|1),INTRON(MODIFIER||||912|GRID2|protein_coding|CODING|ENST00000510992|2|1),INTRON(MODIFIER|||||GRID2|processed_transcript|CODING|ENST00000505687|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:0:0:0:32,32:0,0:0,0:0,0	104:0:0:0:94,94:0,0:0,0:10,10
4	93772657	.	C	T	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1007|GRID2|protein_coding|CODING|ENST00000282020|2|1),INTRON(MODIFIER||||912|GRID2|protein_coding|CODING|ENST00000510992|2|1),INTRON(MODIFIER|||||GRID2|nonsense_mediated_decay|CODING|ENST00000502699|1|1),INTRON(MODIFIER|||||GRID2|processed_transcript|CODING|ENST00000505687|2|1),INTRON(MODIFIER|||||GRID2|processed_transcript|CODING|ENST00000515744|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:0:0:0:0,0:38,38:0,0:0,0	106:0:0:0:0,0:96,96:0,0:10,10
4	93795674	.	C	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1007|GRID2|protein_coding|CODING|ENST00000282020|2|1),INTRON(MODIFIER||||912|GRID2|protein_coding|CODING|ENST00000510992|2|1),INTRON(MODIFIER|||||GRID2|nonsense_mediated_decay|CODING|ENST00000502699|1|1),INTRON(MODIFIER|||||GRID2|processed_transcript|CODING|ENST00000505687|2|1),INTRON(MODIFIER|||||GRID2|processed_transcript|CODING|ENST00000515744|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:0:0:0:0,0:32,32:0,0:0,0	108:1:0:0:8,8:99,101:0,0:0,0
4	94036679	.	G	C	.	PASS	NT=ref;QSS=23;QSS_NT=23;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||GRID2|processed_transcript|CODING|ENST00000515744||1),INTRON(MODIFIER||||1007|GRID2|protein_coding|CODING|ENST00000282020|4|1),INTRON(MODIFIER||||912|GRID2|protein_coding|CODING|ENST00000510992|3|1),INTRON(MODIFIER|||||GRID2|nonsense_mediated_decay|CODING|ENST00000502699|3|1),INTRON(MODIFIER|||||GRID2|processed_transcript|CODING|ENST00000505687|4|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	46:0:0:0:0,0:0,0:46,46:0,0	105:0:0:0:0,0:10,10:95,95:0,0
4	94385186	.	G	A	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1007|GRID2|protein_coding|CODING|ENST00000282020|11|1),INTRON(MODIFIER||||912|GRID2|protein_coding|CODING|ENST00000510992|10|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	43:0:0:0:0,0:0,0:43,43:0,0	94:1:0:0:9,10:0,0:84,85:0,0
4	94680461	.	G	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1007|GRID2|protein_coding|CODING|ENST00000282020|14|1),INTRON(MODIFIER||||912|GRID2|protein_coding|CODING|ENST00000510992|13|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:1:0:0:0,0:0,0:34,34:2,2	96:0:0:0:4,4:0,0:92,92:0,0
4	96428232	.	G	A	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||260|UNC5C|protein_coding|CODING|ENST00000504962|1|1),INTRON(MODIFIER||||597|UNC5C|protein_coding|CODING|ENST00000506749|1|1),INTRON(MODIFIER||||744|UNC5C|protein_coding|CODING|ENST00000513796|1|1),INTRON(MODIFIER||||931|UNC5C|protein_coding|CODING|ENST00000453304|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	45:1:0:0:0,0:0,0:44,45:0,0	108:0:0:0:7,7:0,0:101,102:0,0
4	97123287	.	C	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:1:0:0:0,0:28,29:0,0:0,0	120:0:0:0:0,0:110,110:10,10:0,0
4	97286745	.	T	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||RP11-145G20.1|lincRNA|NON_CODING|ENST00000513393||1),INTRON(MODIFIER|||||RP11-145G20.1|lincRNA|NON_CODING|ENST00000522173|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:0:0:0:0,0:0,0:0,0:35,35	95:1:0:0:4,4:0,0:0,0:90,91
4	98636988	.	G	A	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||186|STPG2|protein_coding|CODING|ENST00000522676|3|1),INTRON(MODIFIER||||459|STPG2|protein_coding|CODING|ENST00000295268|9|1),INTRON(MODIFIER|||||STPG2|processed_transcript|CODING|ENST00000506482|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	41:0:0:0:0,0:0,0:41,41:0,0	99:0:0:0:9,9:0,0:90,90:0,0
4	98713955	.	G	A	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||186|STPG2|protein_coding|CODING|ENST00000522676|3|1),INTRON(MODIFIER||||459|STPG2|protein_coding|CODING|ENST00000295268|9|1),INTRON(MODIFIER|||||STPG2|processed_transcript|CODING|ENST00000506482|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:0:0:0:0,0:0,0:37,37:0,0	102:0:0:0:9,9:0,0:93,93:0,0
4	99366689	.	A	T	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||516|RAP1GDS1|protein_coding|CODING|ENST00000264572||1),DOWNSTREAM(MODIFIER||||558|RAP1GDS1|protein_coding|CODING|ENST00000408900||1),DOWNSTREAM(MODIFIER||||559|RAP1GDS1|protein_coding|CODING|ENST00000380158||1),DOWNSTREAM(MODIFIER||||607|RAP1GDS1|protein_coding|CODING|ENST00000408927||1),DOWNSTREAM(MODIFIER||||607|RAP1GDS1|protein_coding|CODING|ENST00000453712||1),DOWNSTREAM(MODIFIER||||608|RAP1GDS1|protein_coding|CODING|ENST00000339360||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	41:0:0:0:41,41:0,0:0,0:0,0	115:0:0:0:103,103:0,0:0,0:12,12
4	99570970	.	C	A	.	PASS	NT=ref;QSS=80;QSS_NT=80;SGT=CC->AC;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER||||109|TSPAN5|protein_coding|CODING|ENST00000515287|1|1),INTRON(MODIFIER||||197|TSPAN5|protein_coding|CODING|ENST00000505184|1|1),INTRON(MODIFIER||||268|TSPAN5|protein_coding|CODING|ENST00000305798|1|1),INTRON(MODIFIER||||59|TSPAN5|protein_coding|CODING|ENST00000511651|1|1),INTRON(MODIFIER|||||TSPAN5|nonsense_mediated_decay|CODING|ENST00000508798|1|1),INTRON(MODIFIER|||||TSPAN5|nonsense_mediated_decay|CODING|ENST00000511800|1|1),INTRON(MODIFIER|||||TSPAN5|retained_intron|CODING|ENST00000507167|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:0:0:0:0,0:39,39:0,0:0,0	247:1:0:0:139,139:105,110:0,1:2,2
4	99570990	.	T	A	.	PASS	NT=ref;QSS=67;QSS_NT=67;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||109|TSPAN5|protein_coding|CODING|ENST00000515287|1|1),INTRON(MODIFIER||||197|TSPAN5|protein_coding|CODING|ENST00000505184|1|1),INTRON(MODIFIER||||268|TSPAN5|protein_coding|CODING|ENST00000305798|1|1),INTRON(MODIFIER||||59|TSPAN5|protein_coding|CODING|ENST00000511651|1|1),INTRON(MODIFIER|||||TSPAN5|nonsense_mediated_decay|CODING|ENST00000508798|1|1),INTRON(MODIFIER|||||TSPAN5|nonsense_mediated_decay|CODING|ENST00000511800|1|1),INTRON(MODIFIER|||||TSPAN5|retained_intron|CODING|ENST00000507167|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:0:0:0:0,0:0,0:0,0:40,40	149:0:0:0:52,52:0,0:0,0:97,97
4	103810540	.	C	T	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||135|CISD2|protein_coding|CODING|ENST00000273986||1),DOWNSTREAM(MODIFIER||||145|CISD2|protein_coding|CODING|ENST00000503643||1),DOWNSTREAM(MODIFIER|||||CISD2|nonsense_mediated_decay|CODING|ENST00000574446||1),INTRON(MODIFIER||||475|SLC9B1|protein_coding|CODING|ENST00000394789|11|1),INTRON(MODIFIER|||||SLC9B1|nonsense_mediated_decay|CODING|ENST00000503584|10|1),INTRON(MODIFIER|||||SLC9B1|nonsense_mediated_decay|CODING|ENST00000514972|10|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	42:0:0:0:0,0:42,43:0,0:0,0	116:1:0:0:0,0:110,112:0,0:5,5
4	104256845	rs4128305	C	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-328K4.1|lincRNA|NON_CODING|ENST00000513793|1|1);RSPOS=104256845;RV;dbSNPBuildID=108;SSR=0;SAO=0;VP=050100000015000102000100;WGT=1;VC=SNV;SLO;OTH;ASP;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	27:0:0:0:0,0:27,28:0,0:0,0	95:0:0:0:0,0:81,82:1,1:13,13
4	105652738	.	T	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-556I14.2|processed_transcript|NON_CODING|ENST00000515127|4|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:0:0:0:0,1:0,0:0,0:29,29	115:1:0:0:0,0:6,6:1,1:107,108
4	105878397	.	C	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-556I14.1|lincRNA|NON_CODING|ENST00000506148|1|1),INTRON(MODIFIER|||||RP11-556I14.1|lincRNA|NON_CODING|ENST00000515649|2|1),INTRON(MODIFIER|||||RP11-556I14.2|processed_transcript|NON_CODING|ENST00000515127|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:6:0:0:0,2:31,38:0,0:0,0	85:4:4:0:1,1:74,82:0,0:6,6
4	106757149	.	C	T	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||546|GSTCD|protein_coding|CODING|ENST00000394730|9|1),INTRON(MODIFIER||||56|INTS12|protein_coding|CODING|ENST00000510876|3|1),INTRON(MODIFIER||||633|GSTCD|protein_coding|CODING|ENST00000360505|9|1),INTRON(MODIFIER||||633|GSTCD|protein_coding|CODING|ENST00000394728|8|1),INTRON(MODIFIER||||633|GSTCD|protein_coding|CODING|ENST00000515279|9|1),INTRON(MODIFIER|||||GSTCD|TEC|CODING|ENST00000505640|9|1),INTRON(MODIFIER|||||GSTCD|processed_transcript|CODING|ENST00000515255|7|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	45:1:0:0:0,0:44,45:0,0:0,0	102:2:0:0:0,0:90,91:0,0:10,10
4	107283050	rs113512421	G	A	.	PASS	NT=ref;QSS=23;QSS_NT=23;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||GIMD1|lincRNA|NON_CODING|ENST00000507153|1|1);RSPOS=107283050;GMAF=0.0023;dbSNPBuildID=132;SSR=0;SAO=0;VP=050100080001000116000100;GENEINFO=LOC100507096:100507096;WGT=1;VC=SNV;SLO;INT;GNO;KGPhase1;KGPROD;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	45:0:0:0:0,0:0,0:45,45:0,0	88:0:0:0:8,8:0,0:80,80:0,0
4	108965360	.	G	T	.	PASS	NT=ref;QSS=24;QSS_NT=24;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||303|LEF1|protein_coding|CODING|ENST00000510624||1),DOWNSTREAM(MODIFIER||||371|LEF1|protein_coding|CODING|ENST00000438313||1),DOWNSTREAM(MODIFIER||||386|LEF1|protein_coding|CODING|ENST00000379951||1),DOWNSTREAM(MODIFIER||||399|LEF1|protein_coding|CODING|ENST00000265165||1),DOWNSTREAM(MODIFIER|||||LEF1|processed_transcript|CODING|ENST00000503879||1),DOWNSTREAM(MODIFIER|||||LEF1|processed_transcript|CODING|ENST00000504426||1),DOWNSTREAM(MODIFIER|||||LEF1|processed_transcript|CODING|ENST00000505297||1),DOWNSTREAM(MODIFIER|||||LEF1|processed_transcript|CODING|ENST00000505379||1),DOWNSTREAM(MODIFIER|||||LEF1|processed_transcript|CODING|ENST00000509428||1),DOWNSTREAM(MODIFIER|||||LEF1|processed_transcript|CODING|ENST00000510135||1),DOWNSTREAM(MODIFIER|||||LEF1|processed_transcript|CODING|ENST00000512407||1),DOWNSTREAM(MODIFIER|||||LEF1|processed_transcript|CODING|ENST00000514444||1),DOWNSTREAM(MODIFIER|||||LEF1|retained_intron|CODING|ENST00000507470||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	48:0:0:0:0,0:0,0:48,48:0,0	86:0:0:0:0,0:0,0:80,81:6,6
4	109360715	.	G	A	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=GG->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	51:1:0:0:0,2:0,0:50,54:0,0	131:1:0:0:6,13:0,0:124,130:0,0
4	109627862	.	C	T	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:0:0:0:0,0:36,36:0,0:0,0	106:1:0:0:0,0:96,97:1,1:8,8
4	110819356	.	T	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	28:0:0:0:0,0:0,0:0,0:28,30	83:3:0:0:8,8:0,0:0,0:72,76
4	110819404	.	T	C	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:0:0:0:0,0:0,0:0,0:36,38	85:0:0:0:0,0:6,6:0,0:79,79
4	111679082	.	T	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	23:1:0:0:0,0:0,1:0,0:22,23	54:1:0:0:0,0:11,18:0,0:42,55
4	111679085	.	T	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->AT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	23:2:0:0:0,1:0,0:0,0:21,23	52:1:0:0:11,18:0,0:0,0:40,52
4	111679097	.	C	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	24:1:0:0:0,0:23,24:0,0:0,1	51:3:0:0:0,0:39,52:0,0:9,17
4	112010076	.	A	G	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:0:0:0:40,40:0,0:0,0:0,0	102:0:0:0:97,97:0,0:5,5:0,0
4	112124393	.	G	A	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:0:0:0:0,0:0,0:34,34:0,0	105:0:0:0:8,8:0,0:97,97:0,0
4	112297108	.	T	A	.	PASS	NT=ref;QSS=23;QSS_NT=23;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	48:0:0:0:0,0:0,0:0,0:48,48	99:3:0:0:6,7:0,0:0,1:90,91
4	112361316	.	G	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:0:0:0:0,0:0,0:35,36:0,0	108:1:0:0:0,0:0,0:102,103:5,5
4	112995251	.	A	G	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||RP11-269F21.3|lincRNA|NON_CODING|ENST00000511219||1),UPSTREAM(MODIFIER|||||RP11-477G18.4|processed_pseudogene|NON_CODING|ENST00000510182||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:1:0:0:34,35:0,0:0,0:0,0	99:0:0:0:94,94:0,0:5,5:0,0
4	113537649	.	C	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||173|C4orf21|protein_coding|CODING|ENST00000503172||1),DOWNSTREAM(MODIFIER|||||C4orf21|nonsense_mediated_decay|CODING|ENST00000502805||1),DOWNSTREAM(MODIFIER|||||C4orf21|retained_intron|CODING|ENST00000512075||1),INTRON(MODIFIER||||1062|C4orf21|protein_coding|CODING|ENST00000309071|6|1),INTRON(MODIFIER||||2104|C4orf21|protein_coding|CODING|ENST00000505019|6|1),INTRON(MODIFIER||||915|C4orf21|protein_coding|CODING|ENST00000445203|7|1),INTRON(MODIFIER|||||C4orf21|nonsense_mediated_decay|CODING|ENST00000473015|6|1),INTRON(MODIFIER|||||C4orf21|nonsense_mediated_decay|CODING|ENST00000514770|7|1),INTRON(MODIFIER|||||C4orf21|retained_intron|CODING|ENST00000264370|6|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	42:5:0:0:0,0:37,42:0,0:0,0	81:3:0:0:0,0:71,76:7,8:0,0
4	113989141	.	C	G	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1113|ANK2|protein_coding|CODING|ENST00000503271|2|1),INTRON(MODIFIER||||1610|ANK2|protein_coding|CODING|ENST00000503423|2|1),INTRON(MODIFIER||||1729|ANK2|protein_coding|CODING|ENST00000504454|1|1),INTRON(MODIFIER||||1863|ANK2|protein_coding|CODING|ENST00000506722|2|1),INTRON(MODIFIER||||1872|ANK2|protein_coding|CODING|ENST00000394537|1|1),INTRON(MODIFIER||||3924|ANK2|protein_coding|CODING|ENST00000264366|1|1),INTRON(MODIFIER||||3957|ANK2|protein_coding|CODING|ENST00000357077|1|1),INTRON(MODIFIER|||||ANK2|processed_transcript|CODING|ENST00000514246|1|1),INTRON(MODIFIER|||||RP11-650J17.1|antisense|NON_CODING|ENST00000508959|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	41:0:0:0:0,0:41,41:0,0:0,0	109:0:0:0:0,0:103,103:6,6:0,0
4	114347888	.	T	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=TT->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:0:0:0:0,0:0,1:0,0:36,37	117:0:0:0:0,0:6,9:0,0:111,117
4	115681591	.	A	G	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:0:0:0:38,38:0,0:0,0:0,0	101:0:0:0:94,94:2,2:5,5:0,0
4	116642151	.	G	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:0:0:0:0,0:0,0:29,29:0,0	108:0:0:0:0,0:0,0:103,103:5,5
4	117006431	.	C	T	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-659O3.1|processed_transcript|NON_CODING|ENST00000508414|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:0:0:0:0,0:38,38:0,0:0,0	110:1:0:0:0,0:97,97:0,0:12,13
4	118488639	.	G	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||AC092661.1|lincRNA|NON_CODING|ENST00000422145|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:0:0:0:0,0:0,0:29,29:0,0	80:2:0:0:0,0:6,6:72,74:0,0
4	118748210	.	T	A	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:0:0:0:0,0:0,0:0,0:37,37	97:2:0:0:6,7:0,0:0,0:89,90
4	118970899	rs79715578	A	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||561|NDST3|protein_coding|CODING|ENST00000433996|1|1),INTRON(MODIFIER||||873|NDST3|protein_coding|CODING|ENST00000296499|1|1),INTRON(MODIFIER|||||NDST3|retained_intron|CODING|ENST00000394488|1|1);RSPOS=118970899;dbSNPBuildID=131;SSR=0;SAO=0;VP=050000080001000102000100;GENEINFO=NDST3:9348;WGT=1;VC=SNV;INT;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:0:0:0:38,39:0,0:0,0:0,0	106:2:0:0:97,99:7,7:0,0:0,0
4	119361020	.	A	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	51:0:0:0:51,53:0,0:0,0:0,0	97:0:0:0:92,94:0,0:0,0:5,6
4	119406140	.	A	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||CEP170P1|transcribed_processed_pseudogene|NON_CODING|ENST00000502249|4|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	28:0:0:0:28,28:0,0:0,0:0,0	101:2:0:0:91,92:0,0:0,0:8,9
4	119453903	.	C	G	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||CEP170P1|processed_pseudogene|NON_CODING|ENST00000450306|2|1),INTRON(MODIFIER|||||CEP170P1|processed_transcript|NON_CODING|ENST00000412784|2|1),INTRON(MODIFIER|||||CEP170P1|transcribed_processed_pseudogene|NON_CODING|ENST00000502249|10|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	44:1:0:0:0,0:43,44:0,0:0,0	105:0:0:0:0,0:98,98:7,7:0,0
4	119488000	rs200627247	G	A	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=119488000;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:0:0:0:0,0:0,0:36,36:0,0	99:2:0:0:5,7:0,0:92,93:0,0
4	121408930	.	G	C	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	44:0:0:0:0,0:0,0:44,44:0,0	96:1:0:0:0,0:4,4:91,92:0,0
4	122084581	rs185567948	C	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||325|TNIP3|protein_coding|CODING|ENST00000057513|1|1),INTRON(MODIFIER||||325|TNIP3|protein_coding|CODING|ENST00000454328|3|1),INTRON(MODIFIER||||369|TNIP3|protein_coding|CODING|ENST00000507879|4|1),INTRON(MODIFIER||||376|TNIP3|protein_coding|CODING|ENST00000509841|4|1),INTRON(MODIFIER|||||TNIP3|retained_intron|CODING|ENST00000506753|1|1);RSPOS=122084581;GMAF=0.0018;dbSNPBuildID=135;SSR=0;SAO=0;VP=050000080005000014000100;GENEINFO=TNIP3:79931;WGT=1;VC=SNV;INT;ASP;KGPhase1;KGPROD	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:0:0:0:0,0:35,35:0,0:0,0	106:0:0:0:0,0:101,101:0,0:5,5
4	122145391	.	G	A	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||376|TNIP3|protein_coding|CODING|ENST00000509841|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:0:0:0:0,0:0,0:34,34:0,0	110:0:0:0:6,6:0,0:104,106:0,0
4	124703903	.	G	T	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-93L9.1|processed_transcript|NON_CODING|ENST00000508111|3|1),INTRON(MODIFIER|||||RP11-93L9.1|processed_transcript|NON_CODING|ENST00000511919|3|1),INTRON(MODIFIER|||||RP11-93L9.1|processed_transcript|NON_CODING|ENST00000515769|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:0:0:0:0,0:1,1:39,39:0,0	100:0:0:0:0,0:0,0:94,94:6,6
4	126158300	.	T	G	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=TT->GT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:0:0:0:0,0:0,0:0,0:38,38	94:3:0:0:0,0:0,0:4,4:87,90
4	129005076	.	T	C	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||281|LARP1B|protein_coding|CODING|ENST00000354456|5|1),INTRON(MODIFIER||||335|LARP1B|protein_coding|CODING|ENST00000394288|5|1),INTRON(MODIFIER||||358|LARP1B|protein_coding|CODING|ENST00000432347|5|1),INTRON(MODIFIER||||518|LARP1B|protein_coding|CODING|ENST00000512292|5|1),INTRON(MODIFIER||||522|LARP1B|protein_coding|CODING|ENST00000427266|5|1),INTRON(MODIFIER||||573|LARP1B|protein_coding|CODING|ENST00000508819|4|1),INTRON(MODIFIER||||787|LARP1B|protein_coding|CODING|ENST00000441387|5|1),INTRON(MODIFIER||||855|LARP1B|protein_coding|CODING|ENST00000264584|4|1),INTRON(MODIFIER||||914|LARP1B|protein_coding|CODING|ENST00000326639|5|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	49:3:0:0:0,0:1,2:0,1:45,51	97:6:0:0:3,4:9,12:1,2:78,84
4	131153185	.	A	G	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:0:0:0:36,36:0,0:0,0:0,0	92:1:0:0:82,84:0,0:9,9:0,0
4	131192454	.	T	C	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	54:2:0:0:0,0:0,0:0,0:52,53	106:1:0:0:0,1:4,4:0,0:101,102
4	131383740	.	C	T	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:0:0:0:0,0:40,40:0,0:0,0	111:2:0:0:0,1:101,101:0,0:8,9
4	131557251	.	C	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:1:0:0:0,0:33,34:0,0:0,0	102:0:0:0:0,0:94,94:0,0:8,8
4	131775025	.	G	A	.	PASS	NT=ref;QSS=34;QSS_NT=34;SGT=GG->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	45:0:0:0:0,0:0,0:45,45:0,0	94:0:0:0:17,17:0,0:77,79:0,0
4	131863482	.	T	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:0:0:0:0,0:0,0:0,0:32,32	106:0:0:0:7,7:0,0:0,0:99,99
4	132509094	.	T	C	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:0:0:0:0,0:0,0:0,0:39,39	94:1:0:0:0,0:8,8:0,0:85,86
4	132595442	rs76531712	G	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=132595442;dbSNPBuildID=131;SSR=0;SAO=0;VP=050000000001000002000100;WGT=1;VC=SNV;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	28:0:0:0:0,0:0,0:28,28:0,0	108:1:0:0:5,11:0,0:102,104:0,0
4	132668867	.	G	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	75:3:0:0:1,2:0,1:71,93:0,0	158:0:0:0:11,11:0,0:147,180:0,0
4	132834822	.	T	A	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:0:0:0:0,0:1,1:0,0:36,36	76:0:0:0:7,7:0,0:0,0:69,69
4	132850492	rs2772882	G	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||RP11-745L13.2|lincRNA|NON_CODING|ENST00000510592||1),INTERGENIC(MODIFIER||||||||||1);RSPOS=132850492;dbSNPBuildID=100;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	43:1:0:0:0,0:0,0:42,43:0,0	106:1:0:0:7,9:1,1:97,98:0,1
4	133061858	.	C	A	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	43:0:0:0:0,0:43,43:0,0:0,0	124:0:0:0:10,10:114,115:0,0:0,0
4	134794364	.	G	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-427M20.1|lincRNA|NON_CODING|ENST00000507844|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:5:0:0:0,1:0,0:32,47:0,0	115:15:0:0:8,12:0,0:92,130:0,0
4	136798444	.	G	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||LINC00613|lincRNA|NON_CODING|ENST00000504365|2|1),INTRON(MODIFIER|||||LINC00613|lincRNA|NON_CODING|ENST00000508714|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:0:0:0:0,0:0,0:31,31:0,0	104:0:0:0:2,2:0,0:96,96:6,6
4	137437499	.	C	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:0:0:0:0,0:31,32:0,0:0,0	96:1:0:0:7,7:88,89:0,0:0,0
4	139094854	.	C	G	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||SLC7A11-AS1|retained_intron|NON_CODING|ENST00000514752||1),INTRON(MODIFIER||||501|SLC7A11|protein_coding|CODING|ENST00000280612|11|1),INTRON(MODIFIER|||||SLC7A11-AS1|antisense|NON_CODING|ENST00000510767|5|1),INTRON(MODIFIER|||||SLC7A11-AS1|antisense|NON_CODING|ENST00000512538|1|1),INTRON(MODIFIER|||||SLC7A11-AS1|antisense|NON_CODING|ENST00000512786|3|1),INTRON(MODIFIER|||||SLC7A11|nonsense_mediated_decay|CODING|ENST00000509248|6|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:0:0:0:0,0:40,40:0,0:0,0	103:4:0:0:0,0:90,94:9,9:0,0
4	139332754	.	G	A	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||LINC00499|lincRNA|NON_CODING|ENST00000507145|2|1),INTRON(MODIFIER|||||LINC00499|lincRNA|NON_CODING|ENST00000510736|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:0:0:0:0,0:0,0:38,40:0,0	105:1:0:0:10,11:0,0:94,95:0,0
4	140133550	rs112161302	G	A	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=140133550;GMAF=0.0092;dbSNPBuildID=132;SSR=0;SAO=0;VP=050100000001040116000100;WGT=1;VC=SNV;SLO;VLD;GNO;KGPhase1;KGPROD;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	41:0:0:0:0,0:0,0:41,41:0,0	86:0:0:0:6,6:1,1:78,78:1,1
4	141701762	.	A	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=AA->AT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||Y_RNA|misc_RNA|NON_CODING|ENST00000410681||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:2:0:0:31,34:1,2:0,0:0,2	74:4:0:0:54,63:0,0:2,2:14,15
4	142992883	.	A	G	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||924|INPP4B|protein_coding|CODING|ENST00000262992|23|1),INTRON(MODIFIER||||924|INPP4B|protein_coding|CODING|ENST00000308502|22|1),INTRON(MODIFIER||||924|INPP4B|protein_coding|CODING|ENST00000508116|24|1),INTRON(MODIFIER||||924|INPP4B|protein_coding|CODING|ENST00000513000|26|1),INTRON(MODIFIER||||938|INPP4B|protein_coding|CODING|ENST00000509777|25|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	45:0:0:0:45,45:0,0:0,0:0,0	94:1:0:0:87,88:0,0:6,6:0,0
4	143210074	.	G	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||685|INPP4B|protein_coding|CODING|ENST00000514525|2|1),INTRON(MODIFIER||||687|INPP4B|protein_coding|CODING|ENST00000511838|2|1),INTRON(MODIFIER||||816|INPP4B|protein_coding|CODING|ENST00000510812|8|1),INTRON(MODIFIER||||924|INPP4B|protein_coding|CODING|ENST00000262992|7|1),INTRON(MODIFIER||||924|INPP4B|protein_coding|CODING|ENST00000308502|6|1),INTRON(MODIFIER||||924|INPP4B|protein_coding|CODING|ENST00000508116|8|1),INTRON(MODIFIER||||924|INPP4B|protein_coding|CODING|ENST00000513000|10|1),INTRON(MODIFIER||||938|INPP4B|protein_coding|CODING|ENST00000509777|9|1),INTRON(MODIFIER|||||INPP4B|nonsense_mediated_decay|CODING|ENST00000506297|4|1),INTRON(MODIFIER|||||INPP4B|nonsense_mediated_decay|CODING|ENST00000512630|8|1),UPSTREAM(MODIFIER|||||RPL5P13|processed_pseudogene|NON_CODING|ENST00000462840||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:0:0:0:0,0:0,0:30,30:0,0	107:1:0:0:6,6:0,0:100,103:0,0
4	144764206	rs5016859	C	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->AC;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER|||||RP13-578N3.3|antisense|NON_CODING|ENST00000499587|4|1);RSPOS=144764206;dbSNPBuildID=113;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	55:0:0:0:0,1:55,55:0,0:0,0	116:0:0:0:9,15:107,107:0,0:0,0
4	144764207	rs5016858	A	G	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER|||||RP13-578N3.3|antisense|NON_CODING|ENST00000499587|4|1);RSPOS=144764207;dbSNPBuildID=113;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	56:0:0:0:56,56:0,0:0,1:0,0	115:0:0:0:104,104:2,2:9,15:0,0
4	144764214	rs5016857	T	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->GT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER|||||RP13-578N3.3|antisense|NON_CODING|ENST00000499587|4|1);RSPOS=144764214;GMAF=0.0971;dbSNPBuildID=113;SSR=1;SAO=0;VP=050000000005000016000140;WGT=1;VC=SNV;ASP;KGPhase1;KGPROD;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	56:0:0:0:0,0:1,1:0,1:55,55	119:1:0:0:0,0:0,2:9,13:109,110
4	144925726	rs79047620	C	G	.	PASS	NT=ref;QSS=32;QSS_NT=32;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||58|GYPB|protein_coding|CODING|ENST00000513128|1|1),INTRON(MODIFIER||||62|GYPB|protein_coding|CODING|ENST00000429670|1|1),INTRON(MODIFIER||||91|GYPB|protein_coding|CODING|ENST00000283126|1|1),INTRON(MODIFIER||||91|GYPB|protein_coding|CODING|ENST00000502664|1|1),INTRON(MODIFIER|||||GYPB|nonsense_mediated_decay|CODING|ENST00000504951|1|1),INTRON(MODIFIER|||||GYPB|nonsense_mediated_decay|CODING|ENST00000505583|1|1),INTRON(MODIFIER|||||GYPB|nonsense_mediated_decay|CODING|ENST00000506516|2|1),INTRON(MODIFIER|||||GYPB|nonsense_mediated_decay|CODING|ENST00000506679|2|1),INTRON(MODIFIER|||||GYPB|nonsense_mediated_decay|CODING|ENST00000511198|1|1),INTRON(MODIFIER|||||GYPB|processed_transcript|CODING|ENST00000507009|1|1),INTRON(MODIFIER|||||GYPB|processed_transcript|CODING|ENST00000510196|1|1),INTRON(MODIFIER|||||GYPB|processed_transcript|CODING|ENST00000513557|1|1),INTRON(MODIFIER|||||GYPB|processed_transcript|CODING|ENST00000513677|1|1),INTRON(MODIFIER|||||GYPB|retained_intron|CODING|ENST00000503255|1|1),INTRON(MODIFIER|||||GYPB|retained_intron|CODING|ENST00000508618|1|1),INTRON(MODIFIER|||||GYPB|retained_intron|CODING|ENST00000508841|1|1),INTRON(MODIFIER|||||RP11-673E1.4|processed_transcript|NON_CODING|ENST00000506982|2|1);RSPOS=144925726;dbSNPBuildID=131;SSR=0;SAO=0;VP=050000080005000102000100;GENEINFO=GYPB:2994;WGT=1;VC=SNV;INT;ASP;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	41:1:0:0:1,1:39,40:0,1:0,0	132:6:0:0:0,0:104,110:22,31:0,0
4	144955302	.	G	T	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=GG->GT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER||||91|GYPB|protein_coding|CODING|ENST00000283126|1|1),INTRON(MODIFIER|||||RP11-673E1.4|processed_transcript|NON_CODING|ENST00000506982|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	53:1:0:0:0,0:0,1:52,52:0,2	123:1:0:0:0,0:0,1:115,116:7,10
4	145164904	.	A	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:0:0:0:31,31:0,0:0,0:0,0	103:1:0:0:92,93:10,10:0,0:0,0
4	145676922	.	G	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:0:0:0:0,0:0,0:31,31:0,0	118:2:0:0:10,11:0,0:106,107:0,0
4	148263881	.	C	T	.	PASS	NT=ref;QSS=23;QSS_NT=23;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||MIR548G|miRNA|NON_CODING|ENST00000408442||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	47:1:0:0:0,0:46,47:0,0:0,0	92:1:0:0:0,1:82,83:0,0:9,9
4	148549188	.	T	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||261|TMEM184C|protein_coding|CODING|ENST00000508208|4|1),INTRON(MODIFIER||||438|TMEM184C|protein_coding|CODING|ENST00000296582|4|1),UPSTREAM(MODIFIER|||||TMEM184C|nonsense_mediated_decay|CODING|ENST00000505999||1),UPSTREAM(MODIFIER|||||TMEM184C|retained_intron|CODING|ENST00000506826||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	46:0:0:0:0,0:1,1:1,1:44,46	94:2:0:0:0,1:10,10:0,1:82,83
4	148854738	.	G	A	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||384|ARHGAP10|protein_coding|CODING|ENST00000414545|4|1),INTRON(MODIFIER||||786|ARHGAP10|protein_coding|CODING|ENST00000336498|13|1),INTRON(MODIFIER|||||ARHGAP10|retained_intron|CODING|ENST00000506054|7|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	45:1:0:0:0,0:0,0:44,46:0,0	97:0:0:0:5,5:0,0:92,93:0,0
4	149749218	.	G	A	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:0:0:0:0,0:0,0:36,36:0,0	97:1:0:0:5,5:0,1:91,91:0,0
4	150930077	.	G	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:0:0:0:0,0:0,0:40,40:0,0	91:1:0:0:0,0:0,0:86,87:4,4
4	151592216	rs74813158	C	G	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||2575|LRBA|protein_coding|CODING|ENST00000507224|37|1),INTRON(MODIFIER||||2851|LRBA|protein_coding|CODING|ENST00000510413|37|1),INTRON(MODIFIER||||2852|LRBA|protein_coding|CODING|ENST00000535741|37|1),INTRON(MODIFIER||||2863|LRBA|protein_coding|CODING|ENST00000357115|37|1),INTRON(MODIFIER|||||LRBA|processed_transcript|CODING|ENST00000513021|1|1);RSPOS=151592216;dbSNPBuildID=131;SSR=0;SAO=0;VP=050000080001000102000100;GENEINFO=LRBA:987;WGT=1;VC=SNV;INT;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:0:1:0:0,0:35,35:0,0:0,0	86:2:1:0:0,0:74,75:10,11:0,0
4	153550283	.	T	C	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||183|TMEM154|protein_coding|CODING|ENST00000304385|6|1),INTRON(MODIFIER|||||TMEM154|retained_intron|CODING|ENST00000510252|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	43:0:0:0:0,0:0,0:0,0:43,43	95:0:0:0:0,0:4,4:0,0:91,91
4	154927549	rs58487513	C	T	.	PASS	NT=ref;QSS=23;QSS_NT=23;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=154927549;GMAF=0.0408;dbSNPBuildID=129;SSR=0;SAO=0;VP=05010000000507011e000100;WGT=1;VC=SNV;SLO;ASP;VLD;G5A;G5;GNO;KGPhase1;KGPilot123;KGPROD;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	47:0:0:0:0,0:46,46:1,1:0,0	92:4:0:0:0,0:80,84:0,0:8,8
4	156618299	.	G	C	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||432|GUCY1A3|protein_coding|CODING|ENST00000393832|3|1),INTRON(MODIFIER||||624|GUCY1A3|protein_coding|CODING|ENST00000511507|3|1),INTRON(MODIFIER||||690|GUCY1A3|protein_coding|CODING|ENST00000296518|3|1),INTRON(MODIFIER||||690|GUCY1A3|protein_coding|CODING|ENST00000455639|3|1),INTRON(MODIFIER||||690|GUCY1A3|protein_coding|CODING|ENST00000506455|3|1),INTRON(MODIFIER||||690|GUCY1A3|protein_coding|CODING|ENST00000511108|4|1),INTRON(MODIFIER||||690|GUCY1A3|protein_coding|CODING|ENST00000513574|2|1),INTRON(MODIFIER|||||GUCY1A3|nonsense_mediated_decay|CODING|ENST00000443668|3|1),INTRON(MODIFIER|||||GUCY1A3|nonsense_mediated_decay|CODING|ENST00000509901|3|1),INTRON(MODIFIER|||||GUCY1A3|nonsense_mediated_decay|CODING|ENST00000515201|2|1),INTRON(MODIFIER|||||GUCY1A3|processed_transcript|CODING|ENST00000515602|4|1),INTRON(MODIFIER|||||GUCY1A3|retained_intron|CODING|ENST00000512983|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:1:0:0:0,0:0,0:36,36:0,1	114:0:0:0:0,0:16,16:98,98:0,0
4	156694266	.	T	C	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||551|GUCY1B3|protein_coding|CODING|ENST00000505154|1|1),INTRON(MODIFIER||||551|GUCY1B3|protein_coding|CODING|ENST00000513437|2|1),INTRON(MODIFIER||||586|GUCY1B3|protein_coding|CODING|ENST00000503520|2|1),INTRON(MODIFIER||||594|GUCY1B3|protein_coding|CODING|ENST00000507146|3|1),INTRON(MODIFIER||||599|GUCY1B3|protein_coding|CODING|ENST00000505764|3|1),INTRON(MODIFIER||||619|GUCY1B3|protein_coding|CODING|ENST00000264424|2|1),INTRON(MODIFIER||||641|GUCY1B3|protein_coding|CODING|ENST00000502959|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:0:0:0:0,0:0,0:0,0:35,35	92:1:0:0:0,0:10,10:0,0:81,83
4	157681415	rs76236827	T	C	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||182|PDGFC|protein_coding|CODING|ENST00000541126||1),DOWNSTREAM(MODIFIER||||190|PDGFC|protein_coding|CODING|ENST00000542208||1),DOWNSTREAM(MODIFIER||||282|PDGFC|protein_coding|CODING|ENST00000422544||1),DOWNSTREAM(MODIFIER||||345|PDGFC|protein_coding|CODING|ENST00000502773||1),DOWNSTREAM(MODIFIER|||||PDGFC|nonsense_mediated_decay|CODING|ENST00000274071||1),DOWNSTREAM(MODIFIER|||||PDGFC|processed_transcript|CODING|ENST00000504672||1),INTERGENIC(MODIFIER||||||||||1);RSPOS=157681415;dbSNPBuildID=131;SSR=0;SAO=0;VP=050000000001040102000100;WGT=1;VC=SNV;VLD;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	50:1:0:0:0,0:1,1:0,0:48,50	105:1:0:0:0,0:8,8:0,0:96,103
4	158010417	.	G	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||303|GLRB|protein_coding|CODING|ENST00000541722|2|1),INTRON(MODIFIER||||497|GLRB|protein_coding|CODING|ENST00000264428|2|1),INTRON(MODIFIER||||497|GLRB|protein_coding|CODING|ENST00000509282|2|1),INTRON(MODIFIER||||56|GLRB|protein_coding|CODING|ENST00000512619|2|1),INTRON(MODIFIER|||||GLRB|nonsense_mediated_decay|CODING|ENST00000506411|3|1),INTRON(MODIFIER|||||GLRB|nonsense_mediated_decay|CODING|ENST00000515642|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:0:0:0:0,0:0,0:32,32:0,0	98:1:0:0:0,0:0,0:89,90:8,8
4	158394175	.	G	A	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:0:0:0:0,0:0,0:38,38:0,0	102:0:0:0:9,9:0,0:93,94:0,0
4	158708966	.	C	G	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:0:0:0:0,0:31,31:0,0:0,0	109:1:0:0:1,1:92,93:15,16:0,0
4	158708967	.	T	G	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:0:0:0:0,0:0,0:0,0:32,32	109:1:0:0:0,0:1,1:15,16:92,93
4	160251417	rs13136708	A	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=AA->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER||||1499|RAPGEF2|protein_coding|CODING|ENST00000264431|6|1),INTRON(MODIFIER|||||RAPGEF2|retained_intron|CODING|ENST00000513816|1|1);RSPOS=160251417;dbSNPBuildID=121;SSR=0;SAO=0;VP=050000080001000002000100;GENEINFO=RAPGEF2:9693;WGT=1;VC=SNV;INT;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:0:0:0:39,40:0,0:0,0:0,0	99:0:0:0:93,95:0,0:5,5:1,1
4	160860214	.	C	G	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	48:4:0:0:0,0:43,49:1,1:0,0	80:5:0:0:0,0:63,72:12,13:0,0
4	161074128	.	T	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=TT->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	42:0:0:0:0,0:0,0:1,1:41,41	94:0:0:0:0,0:7,7:0,0:87,96
4	162150647	.	C	T	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:0:0:0:0,0:33,33:0,0:0,0	100:0:0:0:0,0:86,86:0,0:14,14
4	162791586	.	G	C	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||837|FSTL5|protein_coding|CODING|ENST00000427802|4|1),INTRON(MODIFIER||||846|FSTL5|protein_coding|CODING|ENST00000379164|4|1),INTRON(MODIFIER||||846|FSTL5|protein_coding|CODING|ENST00000536695|3|1),INTRON(MODIFIER||||847|FSTL5|protein_coding|CODING|ENST00000306100|4|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:0:0:0:0,0:0,0:39,39:0,0	95:2:0:0:1,1:6,6:86,88:0,0
4	165245328	.	G	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||140|MARCH1|protein_coding|CODING|ENST00000507270|1|1),INTRON(MODIFIER||||289|MARCH1|protein_coding|CODING|ENST00000503008|1|1),INTRON(MODIFIER||||545|MARCH1|protein_coding|CODING|ENST00000514618|1|1),INTRON(MODIFIER|||||MARCH1|processed_transcript|CODING|ENST00000505391|2|1),INTRON(MODIFIER|||||MARCH1|processed_transcript|CODING|ENST00000508725|1|1),INTRON(MODIFIER|||||MARCH1|processed_transcript|CODING|ENST00000510075|1|1),INTRON(MODIFIER|||||MARCH1|processed_transcript|CODING|ENST00000515471|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	28:0:0:0:0,0:0,0:28,28:0,0	89:2:0:0:8,8:0,0:79,83:0,0
4	166767980	.	T	C	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	41:0:0:0:0,0:0,0:1,1:40,40	95:1:0:0:0,0:5,5:0,0:89,90
4	167174960	rs10050243	C	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=167174960;dbSNPBuildID=119;SSR=0;SAO=0;VP=050000000001000002000100;WGT=1;VC=SNV;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	14:0:0:0:0,0:14,14:0,0:0,0	57:0:2:0:0,0:46,51:0,0:11,13
4	168991607	.	T	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-310I9.1|antisense|NON_CODING|ENST00000506926|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:0:0:0:0,0:0,0:1,1:39,39	97:1:0:0:0,0:0,0:7,7:89,90
4	170578481	.	C	T	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||137|CLCN3|protein_coding|CODING|ENST00000512813|2|1),INTRON(MODIFIER||||172|CLCN3|protein_coding|CODING|ENST00000511092|2|1),INTRON(MODIFIER||||791|CLCN3|protein_coding|CODING|ENST00000360642|2|1),INTRON(MODIFIER||||801|CLCN3|protein_coding|CODING|ENST00000504131|2|1),INTRON(MODIFIER||||818|CLCN3|protein_coding|CODING|ENST00000513761|2|1),INTRON(MODIFIER||||866|CLCN3|protein_coding|CODING|ENST00000347613|2|1),UPSTREAM(MODIFIER||||724|CLCN3|protein_coding|CODING|ENST00000507875||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:1:0:0:0,0:38,39:0,0:0,0	111:0:0:0:0,0:105,105:0,0:6,6
4	172830724	.	G	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||601|GALNTL6|protein_coding|CODING|ENST00000506823|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:1:0:0:0,0:0,0:29,30:0,0	91:1:0:0:0,1:0,0:83,83:7,7
4	173018601	.	G	C	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||584|GALNTL6|protein_coding|CODING|ENST00000508122|1|1),INTRON(MODIFIER||||601|GALNTL6|protein_coding|CODING|ENST00000506823|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:0:0:0:0,0:0,0:34,34:0,0	92:2:0:0:0,0:12,12:78,80:0,0
4	173416098	.	T	C	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||584|GALNTL6|protein_coding|CODING|ENST00000508122|4|1),INTRON(MODIFIER||||601|GALNTL6|protein_coding|CODING|ENST00000506823|5|1),INTRON(MODIFIER|||||GALNTL6|processed_transcript|CODING|ENST00000457021|4|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	44:0:0:0:0,0:0,0:0,0:44,44	119:0:0:0:0,0:11,11:1,1:107,107
4	173641504	.	G	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||584|GALNTL6|protein_coding|CODING|ENST00000508122|4|1),INTRON(MODIFIER||||601|GALNTL6|protein_coding|CODING|ENST00000506823|5|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	28:0:0:0:0,0:0,0:28,28:0,0	95:1:0:0:12,12:0,0:82,83:0,0
4	174708566	.	G	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:0:0:0:0,0:0,0:33,33:0,0	92:2:0:0:7,8:0,0:83,86:0,0
4	175914322	.	A	G	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	43:0:0:0:43,43:0,0:0,0:0,0	96:1:0:0:89,90:0,0:6,6:0,0
4	176747994	.	G	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||116|GPM6A|protein_coding|CODING|ENST00000502754|1|1),INTRON(MODIFIER||||118|GPM6A|protein_coding|CODING|ENST00000512610|1|1),INTRON(MODIFIER||||128|GPM6A|protein_coding|CODING|ENST00000513365|2|1),INTRON(MODIFIER||||217|GPM6A|protein_coding|CODING|ENST00000503397|1|1),INTRON(MODIFIER||||267|GPM6A|protein_coding|CODING|ENST00000506894|1|1),INTRON(MODIFIER||||278|GPM6A|protein_coding|CODING|ENST00000280187|1|1),INTRON(MODIFIER||||40|GPM6A|protein_coding|CODING|ENST00000507540|1|1),INTRON(MODIFIER||||48|GPM6A|protein_coding|CODING|ENST00000509865|4|1),INTRON(MODIFIER||||86|GPM6A|protein_coding|CODING|ENST00000512509|2|1),INTRON(MODIFIER||||97|GPM6A|protein_coding|CODING|ENST00000513667|1|1),INTRON(MODIFIER||||9|GPM6A|protein_coding|CODING|ENST00000503563|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:0:0:0:0,0:0,0:30,30:0,0	110:2:0:0:0,0:0,0:98,99:10,11
4	177066964	.	G	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1283|WDR17|protein_coding|CODING|ENST00000508596|11|1),INTRON(MODIFIER||||1298|WDR17|protein_coding|CODING|ENST00000393643|11|1),INTRON(MODIFIER||||1298|WDR17|protein_coding|CODING|ENST00000507824|11|1),INTRON(MODIFIER||||1322|WDR17|protein_coding|CODING|ENST00000280190|12|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:0:0:0:0,0:0,0:35,35:0,0	123:0:0:0:0,0:0,0:114,115:9,9
4	179905902	.	A	C	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:0:0:0:38,38:0,0:0,0:0,0	94:2:0:0:86,88:6,6:0,0:0,0
4	180729293	.	T	G	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	41:0:0:0:0,0:0,0:0,0:41,41	103:3:0:0:0,0:0,0:6,6:94,97
4	182204754	.	G	T	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:0:0:0:0,0:0,0:36,36:0,0	121:1:0:0:0,0:0,0:109,110:11,11
4	183753520	rs145880614	C	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=183753520;GMAF=0.1584;dbSNPBuildID=134;SSR=0;SAO=0;VP=050000000005000014000100;WGT=1;VC=SNV;ASP;KGPhase1;KGPROD	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:1:0:0:0,0:35,48:0,0:1,1	64:1:0:0:0,0:53,76:0,0:10,17
4	186463214	.	C	G	.	PASS	NT=ref;QSS=23;QSS_NT=23;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	41:1:1:0:0,0:40,41:0,0:0,0	89:9:0:0:0,1:65,67:15,21:0,0
4	186748368	.	C	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER||||1100|SORBS2|protein_coding|CODING|ENST00000284776|1|1),INTRON(MODIFIER||||1200|SORBS2|protein_coding|CODING|ENST00000355634|2|1),INTRON(MODIFIER||||79|SORBS2|protein_coding|CODING|ENST00000415274|1|1),INTRON(MODIFIER||||79|SORBS2|protein_coding|CODING|ENST00000431902|1|1),INTRON(MODIFIER||||86|SORBS2|protein_coding|CODING|ENST00000432655|1|1),INTRON(MODIFIER||||99|SORBS2|protein_coding|CODING|ENST00000444781|1|1),INTRON(MODIFIER|||||SORBS2|processed_transcript|CODING|ENST00000476878|1|1),INTRON(MODIFIER|||||SORBS2|processed_transcript|CODING|ENST00000488562|2|1),INTRON(MODIFIER|||||SORBS2|retained_intron|CODING|ENST00000469627|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	76:18:2:0:0,3:58,117:0,1:0,1	320:62:7:0:1,5:240,478:0,3:17,26
4	186956048	.	T	C	.	PASS	NT=ref;QSS=26;QSS_NT=26;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	44:1:0:0:0,0:0,1:0,0:43,44	122:7:0:0:0,0:19,26:0,0:96,98
4	186958994	.	C	A	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:0:0:0:0,0:34,34:0,0:0,0	97:1:0:0:5,5:91,91:0,0:0,1
4	187284295	.	G	A	.	PASS	NT=ref;QSS=24;QSS_NT=24;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-215A19.1|processed_transcript|NON_CODING|ENST00000505103|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	55:1:0:0:0,0:0,0:54,59:0,0	117:2:0:0:5,7:0,0:110,121:0,0
4	188529994	.	G	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-565A3.2|lincRNA|NON_CODING|ENST00000507817|2|1),UPSTREAM(MODIFIER|||||RP11-565A3.1|lincRNA|NON_CODING|ENST00000505488||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:4:0:0:0,0:0,0:29,33:0,0	85:4:0:0:4,4:0,0:77,82:0,0
4	188912675	rs113131695	A	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER||||310|ZFP42|protein_coding|CODING|ENST00000326866||1),UPSTREAM(MODIFIER||||310|ZFP42|protein_coding|CODING|ENST00000509524||1);RSPOS=188912675;dbSNPBuildID=132;SSR=0;SAO=0;VP=050000000009000002000100;WGT=1;VC=SNV;CFL;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:0:0:0:35,42:0,0:0,1:0,0	97:2:0:0:91,104:0,0:4,5:0,1
4	189400553	rs112956760	C	T	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-219G10.3|processed_transcript|NON_CODING|ENST00000503458|2|1),INTRON(MODIFIER|||||RP11-219G10.3|processed_transcript|NON_CODING|ENST00000510005|3|1),INTRON(MODIFIER|||||RP11-219G10.3|processed_transcript|NON_CODING|ENST00000510832|4|1),INTRON(MODIFIER|||||RP11-219G10.3|processed_transcript|NON_CODING|ENST00000512839|4|1),INTRON(MODIFIER|||||RP11-219G10.3|processed_transcript|NON_CODING|ENST00000513313|2|1);RSPOS=189400553;GMAF=0.0884;dbSNPBuildID=132;SSR=0;SAO=0;VP=050100080009040116000100;GENEINFO=LOC401164:401164;WGT=1;VC=SNV;SLO;INT;CFL;VLD;GNO;KGPhase1;KGPROD;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:0:0:0:0,0:39,39:0,0:0,0	83:0:0:0:0,0:77,79:0,0:6,6
4	189803557	.	A	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	27:0:0:0:27,27:0,0:0,0:0,0	95:0:0:0:87,87:0,0:8,8:0,0
4	190154641	rs113128116	G	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=190154641;dbSNPBuildID=132;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:1:0:0:0,0:0,0:30,52:0,6	51:2:0:0:0,0:0,0:43,78:6,40
4	190276989	rs13128059	G	C	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=190276989;dbSNPBuildID=121;SSR=0;SAO=0;VP=050000000001000002000100;WGT=1;VC=SNV;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	43:3:0:0:0,0:0,0:40,43:0,0	82:2:1:0:0,0:6,6:74,77:0,0
4	190301002	rs201775479	A	G	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=190301002;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	41:2:0:0:39,41:0,0:0,0:0,0	99:1:0:0:89,94:0,0:9,10:0,0
4	190329445	.	C	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	49:0:0:0:0,0:48,52:0,0:1,1	128:6:0:0:1,2:114,124:0,1:7,10
4	190512033	rs78922958	G	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->CG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=190512033;dbSNPBuildID=131;SSR=0;SAO=0;VP=050000000001040102000100;WGT=1;VC=SNV;VLD;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:0:0:0:0,0:0,1:33,33:0,0	114:0:0:0:0,0:6,7:108,108:0,0
4	190750945	rs9684855	C	G	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||AF146191.4|processed_transcript|NON_CODING|ENST00000506276|2|1),INTRON(MODIFIER|||||AF146191.4|processed_transcript|NON_CODING|ENST00000508156|3|1),INTRON(MODIFIER|||||AF146191.4|processed_transcript|NON_CODING|ENST00000511785|2|1);RSPOS=190750945;dbSNPBuildID=119;SSR=0;SAO=0;VP=050000000001000002000100;WGT=1;VC=SNV;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:1:0:0:0,0:28,29:0,0:0,0	74:0:0:0:0,0:63,63:11,12:0,0
4	190811552	rs77831804	A	T	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||AF146191.4|processed_transcript|NON_CODING|ENST00000501825|2|1),INTRON(MODIFIER|||||AF146191.4|processed_transcript|NON_CODING|ENST00000506276|2|1),INTRON(MODIFIER|||||AF146191.4|processed_transcript|NON_CODING|ENST00000508156|3|1),INTRON(MODIFIER|||||AF146191.4|processed_transcript|NON_CODING|ENST00000511785|1|1);RSPOS=190811552;dbSNPBuildID=131;SSR=0;SAO=0;VP=050000080005040102000100;WGT=1;VC=SNV;INT;ASP;VLD;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	42:1:0:0:41,42:0,0:0,0:0,0	122:1:0:0:112,114:0,0:0,0:9,10
4	190811553	rs77876190	T	A	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||AF146191.4|processed_transcript|NON_CODING|ENST00000501825|2|1),INTRON(MODIFIER|||||AF146191.4|processed_transcript|NON_CODING|ENST00000506276|2|1),INTRON(MODIFIER|||||AF146191.4|processed_transcript|NON_CODING|ENST00000508156|3|1),INTRON(MODIFIER|||||AF146191.4|processed_transcript|NON_CODING|ENST00000511785|1|1);RSPOS=190811553;dbSNPBuildID=131;SSR=0;SAO=0;VP=050000080005040102000100;WGT=1;VC=SNV;INT;ASP;VLD;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	42:1:0:0:0,0:0,0:1,1:40,41	120:0:0:0:6,7:0,0:0,0:114,115
4	190834854	.	G	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||AF146191.4|processed_transcript|NON_CODING|ENST00000501825|2|1),INTRON(MODIFIER|||||AF146191.4|processed_transcript|NON_CODING|ENST00000506276|2|1),INTRON(MODIFIER|||||AF146191.4|processed_transcript|NON_CODING|ENST00000508156|2|1),INTRON(MODIFIER|||||AF146191.4|processed_transcript|NON_CODING|ENST00000511785|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	65:0:0:0:1,1:0,0:64,80:0,0	157:5:0:0:7,8:0,1:145,173:0,0
4	190857202	.	T	A	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=TT->AT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER|||||AF146191.4|processed_transcript|NON_CODING|ENST00000501825|2|1),INTRON(MODIFIER|||||AF146191.4|processed_transcript|NON_CODING|ENST00000506276|2|1),INTRON(MODIFIER|||||AF146191.4|processed_transcript|NON_CODING|ENST00000508156|2|1),UPSTREAM(MODIFIER||||101|FRG1|protein_coding|CODING|ENST00000524583||1),UPSTREAM(MODIFIER||||115|FRG1|protein_coding|CODING|ENST00000531991||1),UPSTREAM(MODIFIER||||258|FRG1|protein_coding|CODING|ENST00000226798||1),UPSTREAM(MODIFIER|||||FRG1|nonsense_mediated_decay|CODING|ENST00000533157||1),UPSTREAM(MODIFIER|||||FRG1|processed_transcript|CODING|ENST00000514482||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	64:2:0:0:0,2:0,0:0,0:62,85	161:2:0:0:7,11:0,0:0,0:152,212
4	190865215	.	C	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER||||101|FRG1|protein_coding|CODING|ENST00000524583|3|1),INTRON(MODIFIER||||115|FRG1|protein_coding|CODING|ENST00000531991|3|1),INTRON(MODIFIER||||258|FRG1|protein_coding|CODING|ENST00000226798|2|1),INTRON(MODIFIER|||||FRG1|nonsense_mediated_decay|CODING|ENST00000533157|3|1),INTRON(MODIFIER|||||FRG1|processed_transcript|CODING|ENST00000514482|2|1),UPSTREAM(MODIFIER|||||AF146191.4|processed_transcript|NON_CODING|ENST00000501825||1),UPSTREAM(MODIFIER|||||AF146191.4|processed_transcript|NON_CODING|ENST00000506276||1),UPSTREAM(MODIFIER|||||AF146191.4|processed_transcript|NON_CODING|ENST00000508156||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:0:0:0:0,0:36,78:0,0:0,3	149:1:0:0:0,1:140,262:0,0:8,19
4	190895184	rs73027008	A	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||MLLT10P2|processed_pseudogene|NON_CODING|ENST00000506434||1);RSPOS=190895184;dbSNPBuildID=130;SSR=0;SAO=0;VP=050100000005040102000100;WGT=1;VC=SNV;SLO;ASP;VLD;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:1:0:0:38,38:0,0:0,1:0,1	109:3:0:0:100,102:0,0:6,16:0,0
5	391537	.	C	T	.	PASS	NT=ref;QSS=29;QSS_NT=29;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||11|AHRR|protein_coding|CODING|ENST00000514523|4|1),INTRON(MODIFIER||||156|AHRR|protein_coding|CODING|ENST00000510400|4|1),INTRON(MODIFIER||||547|AHRR|protein_coding|CODING|ENST00000512529|2|1),INTRON(MODIFIER||||701|AHRR|protein_coding|CODING|ENST00000505113|4|1),INTRON(MODIFIER||||719|AHRR|protein_coding|CODING|ENST00000316418|4|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	69:10:0:0:0,1:59,88:0,4:0,1	137:14:0:0:1,1:108,149:4,10:10,13
5	467527	rs112108180	G	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||104|CTD-2228K2.5|protein_coding|CODING|ENST00000342584||1),DOWNSTREAM(MODIFIER||||745|EXOC3|protein_coding|CODING|ENST00000315013||1),DOWNSTREAM(MODIFIER||||745|EXOC3|protein_coding|CODING|ENST00000512944||1),DOWNSTREAM(MODIFIER||||95|CTD-2228K2.5|protein_coding|CODING|ENST00000510604||1),DOWNSTREAM(MODIFIER|||||CTD-2228K2.5|processed_transcript|CODING|ENST00000502337||1),DOWNSTREAM(MODIFIER|||||CTD-2228K2.5|processed_transcript|CODING|ENST00000502511||1),DOWNSTREAM(MODIFIER|||||EXOC3|retained_intron|CODING|ENST00000505947||1),DOWNSTREAM(MODIFIER|||||EXOC3|retained_intron|CODING|ENST00000511015||1),INTRON(MODIFIER|||||CTD-2228K2.5|processed_transcript|CODING|ENST00000510714|1|1),UPSTREAM(MODIFIER|||||EXOC3|processed_transcript|CODING|ENST00000509294||1),UTR_3_PRIME(MODIFIER|||||EXOC3|nonsense_mediated_decay|CODING|ENST00000515601|9|1);RSPOS=467527;dbSNPBuildID=132;SSR=0;SAO=0;VP=050000000005040102000100;WGT=1;VC=SNV;ASP;VLD;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	28:0:0:0:0,0:0,0:28,31:0,0	75:0:0:0:6,6:1,1:68,77:0,0
5	668575	.	G	A	.	PASS	NT=ref;QSS=25;QSS_NT=25;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||CEP72|processed_transcript|CODING|ENST00000514507||1),INTRON(MODIFIER||||219|TPPP|protein_coding|CODING|ENST00000360578|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	52:3:0:0:0,0:0,0:49,52:0,0	107:5:0:0:7,8:0,0:95,108:0,0
5	1105099	.	G	A	.	PASS	NT=ref;QSS=28;QSS_NT=28;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1083|SLC12A7|protein_coding|CODING|ENST00000264930|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	58:4:0:0:0,0:0,0:54,60:0,0	99:10:0:0:12,14:2,2:75,87:0,0
5	1326956	rs184362901	G	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->GT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER||||369|CLPTM1L|protein_coding|CODING|ENST00000507807|6|1),INTRON(MODIFIER||||502|CLPTM1L|protein_coding|CODING|ENST00000320927|8|1),INTRON(MODIFIER||||538|CLPTM1L|protein_coding|CODING|ENST00000320895|9|1),INTRON(MODIFIER|||||CLPTM1L|processed_transcript|CODING|ENST00000513250|3|1),INTRON(MODIFIER|||||CLPTM1L|retained_intron|CODING|ENST00000503042|1|1),INTRON(MODIFIER|||||CLPTM1L|retained_intron|CODING|ENST00000503151|4|1),INTRON(MODIFIER|||||CLPTM1L|retained_intron|CODING|ENST00000508765|4|1),UPSTREAM(MODIFIER|||||CLPTM1L|processed_transcript|CODING|ENST00000506641||1),UPSTREAM(MODIFIER|||||CLPTM1L|processed_transcript|CODING|ENST00000507195||1),UPSTREAM(MODIFIER|||||CLPTM1L|retained_intron|CODING|ENST00000503534||1),UPSTREAM(MODIFIER|||||CLPTM1L|retained_intron|CODING|ENST00000505605||1),UPSTREAM(MODIFIER|||||CLPTM1L|retained_intron|CODING|ENST00000505914||1),UPSTREAM(MODIFIER|||||CLPTM1L|retained_intron|CODING|ENST00000511268||1),UPSTREAM(MODIFIER|||||CLPTM1L|retained_intron|CODING|ENST00000512451||1);RSPOS=1326956;GMAF=0.0229;dbSNPBuildID=135;SSR=0;SAO=0;VP=050000080005000016000100;GENEINFO=CLPTM1L:81037;WGT=1;VC=SNV;INT;ASP;KGPhase1;KGPROD;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:1:0:0:0,0:0,0:32,33:0,1	96:6:0:0:1,2:1,1:75,80:13,17
5	1697314	rs113971481	G	A	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=1697314;GMAF=0.0018;dbSNPBuildID=132;SSR=0;SAO=0;VP=050100000001040116000100;WGT=1;VC=SNV;SLO;VLD;GNO;KGPhase1;KGPROD;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	42:1:0:0:0,0:0,0:41,42:0,0	117:1:0:0:12,12:0,0:104,104:0,1
5	1724586	.	G	C	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||CTD-2587M23.1|lincRNA|NON_CODING|ENST00000565428||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:2:0:0:0,0:0,0:35,38:0,0	113:7:0:0:0,0:12,16:94,98:0,0
5	3134777	.	T	C	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	43:1:0:0:0,0:0,0:1,1:41,42	101:2:0:0:0,0:9,9:0,0:90,92
5	3224397	.	A	G	.	PASS	NT=ref;QSS=23;QSS_NT=23;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	46:1:0:0:45,46:0,0:0,0:0,0	97:1:0:0:90,91:0,0:6,6:0,0
5	3279963	.	G	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:0:0:0:0,0:0,0:31,31:0,0	72:0:0:0:0,0:1,1:67,67:4,4
5	3445975	.	A	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER|||||RP11-121L11.1|lincRNA|NON_CODING|ENST00000505443|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	55:10:0:0:44,78:0,0:0,4:1,2	129:21:1:0:95,194:0,0:13,37:0,4
5	3761481	rs61151902	C	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=3761481;dbSNPBuildID=129;SSR=0;SAO=0;VP=050000000001000002000100;WGT=1;VC=SNV;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:0:0:0:0,0:37,38:1,1:1,1	97:4:3:0:0,0:82,94:11,12:0,0
5	4257140	.	T	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	46:1:0:0:0,0:1,1:0,0:44,45	88:2:0:0:0,0:6,6:0,0:80,81
5	5879885	.	A	G	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:0:0:0:35,36:0,0:0,0:0,0	103:1:0:0:96,97:0,0:6,6:0,0
5	5897062	.	G	A	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:0:0:0:0,0:0,0:36,36:0,0	90:0:0:0:5,5:0,0:85,85:0,0
5	6232846	.	A	G	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:0:0:0:28,29:0,0:2,2:0,0	75:6:0:0:48,51:0,1:21,27:0,0
5	7301311	.	C	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||RP11-404K5.1|unprocessed_pseudogene|NON_CODING|ENST00000500762||1),EXON(MODIFIER|||||RP11-404K5.2|unprocessed_pseudogene|NON_CODING|ENST00000512854|8|1),INTRON(MODIFIER|||||RP11-404K5.2|unprocessed_pseudogene|NON_CODING|ENST00000382550|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:0:0:0:0,0:34,46:0,0:0,1	106:5:0:0:0,0:88,111:0,1:13,20
5	7414069	.	G	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1091|ADCY2|protein_coding|CODING|ENST00000338316|1|1),UPSTREAM(MODIFIER|||||ADCY2|processed_transcript|CODING|ENST00000484965||1),UPSTREAM(MODIFIER|||||ADCY2|processed_transcript|CODING|ENST00000498598||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:0:0:0:0,0:0,0:29,29:0,0	99:3:0:0:5,5:0,0:91,94:0,0
5	7775460	.	T	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1091|ADCY2|protein_coding|CODING|ENST00000338316|18|1),INTRON(MODIFIER||||911|ADCY2|protein_coding|CODING|ENST00000537121|15|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	54:2:0:0:0,0:1,1:0,0:51,53	136:1:0:0:1,1:7,8:0,0:127,127
5	10780928	.	A	C	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||CTD-2154B17.1|lincRNA|NON_CODING|ENST00000503953||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	53:0:0:0:53,53:0,0:0,0:0,0	132:0:0:0:126,127:6,8:0,0:0,0
5	14403192	.	A	G	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||1508|TRIO|protein_coding|CODING|ENST00000509967||1),INTRON(MODIFIER||||2500|TRIO|protein_coding|CODING|ENST00000513206|27|1),INTRON(MODIFIER||||2921|TRIO|protein_coding|CODING|ENST00000537187|31|1),INTRON(MODIFIER||||3097|TRIO|protein_coding|CODING|ENST00000344204|31|1),INTRON(MODIFIER|||||TRIO|nonsense_mediated_decay|CODING|ENST00000512070|31|1),INTRON(MODIFIER|||||TRIO|retained_intron|CODING|ENST00000509354|2|1),INTRON(MODIFIER|||||TRIO|retained_intron|CODING|ENST00000515144|26|1),UPSTREAM(MODIFIER|||||TRIO|retained_intron|CODING|ENST00000512303||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:4:0:0:33,37:0,0:0,0:0,0	101:19:0:0:75,83:0,2:7,16:0,0
5	15935400	.	A	G	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||MIR887|miRNA|NON_CODING|ENST00000401258||1),INTRON(MODIFIER||||444|FBXL7|protein_coding|CODING|ENST00000510662|3|1),INTRON(MODIFIER||||479|FBXL7|protein_coding|CODING|ENST00000329673|2|1),INTRON(MODIFIER||||491|FBXL7|protein_coding|CODING|ENST00000504595|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:0:0:0:34,41:0,0:0,0:0,0	64:2:0:0:56,74:0,0:6,6:0,0
5	15935405	.	G	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->GT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=DOWNSTREAM(MODIFIER|||||MIR887|miRNA|NON_CODING|ENST00000401258||1),INTRON(MODIFIER||||444|FBXL7|protein_coding|CODING|ENST00000510662|3|1),INTRON(MODIFIER||||479|FBXL7|protein_coding|CODING|ENST00000329673|2|1),INTRON(MODIFIER||||491|FBXL7|protein_coding|CODING|ENST00000504595|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:0:0:0:0,0:0,0:32,40:0,0	68:2:0:0:0,0:0,1:62,80:4,4
5	17045222	.	C	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:0:0:0:0,0:31,31:0,0:0,0	96:1:0:0:0,0:89,90:0,0:6,6
5	17466946	.	G	A	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-321E2.4|lincRNA|NON_CODING|ENST00000504998|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	42:0:0:0:0,0:0,0:42,43:0,0	68:0:0:0:5,5:0,0:63,64:0,0
5	17712248	.	C	G	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-454P21.1|lincRNA|NON_CODING|ENST00000511596|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:1:0:0:0,0:37,39:0,0:0,0	119:0:0:0:0,0:112,116:7,7:0,0
5	17737333	.	G	A	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-454P21.1|lincRNA|NON_CODING|ENST00000511596|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:0:0:0:0,0:0,0:39,39:0,0	101:2:0:0:9,9:0,0:90,92:0,0
5	18137435	.	A	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:0:0:0:36,36:0,0:0,0:0,0	105:2:0:0:99,99:0,1:0,0:4,5
5	19197137	.	G	C	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	46:0:0:0:0,0:0,0:46,46:0,0	104:1:0:0:0,0:5,6:98,99:0,0
5	19393453	.	G	T	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:0:0:0:0,0:0,0:38,39:0,0	93:0:0:0:1,1:0,0:82,82:10,10
5	19927980	.	G	C	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||574|CDH18|protein_coding|CODING|ENST00000502796|2|1),INTRON(MODIFIER||||590|CDH18|protein_coding|CODING|ENST00000511273|1|1),INTRON(MODIFIER||||790|CDH18|protein_coding|CODING|ENST00000382275|2|1),INTRON(MODIFIER||||790|CDH18|protein_coding|CODING|ENST00000507958|4|1),INTRON(MODIFIER||||790|CDH18|protein_coding|CODING|ENST00000542864|7|1),INTRON(MODIFIER|||||CDH18|processed_transcript|CODING|ENST00000503132|2|1),INTRON(MODIFIER|||||CDH18|processed_transcript|CODING|ENST00000507632|2|1),INTRON(MODIFIER|||||CDH18|processed_transcript|CODING|ENST00000511423|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	42:0:0:0:0,0:0,0:42,42:0,0	112:0:0:0:0,0:9,9:102,102:1,1
5	20354880	.	G	C	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||790|CDH18|protein_coding|CODING|ENST00000507958|1|1),INTRON(MODIFIER||||790|CDH18|protein_coding|CODING|ENST00000542864|3|1),INTRON(MODIFIER|||||CDH18|processed_transcript|CODING|ENST00000507632|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	41:0:0:0:0,0:0,0:41,41:0,0	90:0:0:0:0,0:10,10:80,80:0,0
5	20699095	.	T	A	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-774D14.1|lincRNA|NON_CODING|ENST00000502427|3|1),INTRON(MODIFIER|||||RP11-774D14.1|lincRNA|NON_CODING|ENST00000512688|2|1),INTRON(MODIFIER|||||RP11-774D14.1|lincRNA|NON_CODING|ENST00000514876|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:0:0:0:0,0:0,0:0,0:36,37	90:3:0:0:9,9:0,0:0,0:78,81
5	20864659	rs62353666	G	T	.	PASS	NT=ref;QSS=23;QSS_NT=23;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-774D14.1|lincRNA|NON_CODING|ENST00000502427|5|1),INTRON(MODIFIER|||||RP11-774D14.1|lincRNA|NON_CODING|ENST00000512688|4|1),INTRON(MODIFIER|||||RP11-774D14.1|lincRNA|NON_CODING|ENST00000514876|4|1);RSPOS=20864659;dbSNPBuildID=129;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:0:0:0:0,0:0,0:33,33:0,0	128:0:0:0:0,0:0,0:108,113:20,26
5	21543131	rs6894028	G	A	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-823P9.1|processed_transcript|NON_CODING|ENST00000508260|8|1);RSPOS=21543131;dbSNPBuildID=116;SSR=0;SAO=0;VP=050000080001040102000100;GENEINFO=GUSBP1:728411;WGT=1;VC=SNV;INT;VLD;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:2:0:0:0,0:0,0:37,39:0,1	111:4:0:0:7,10:0,0:99,102:1,2
5	21965516	.	G	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||754|CDH12|protein_coding|CODING|ENST00000522262|4|1),INTRON(MODIFIER||||794|CDH12|protein_coding|CODING|ENST00000382254|6|1),INTRON(MODIFIER||||794|CDH12|protein_coding|CODING|ENST00000504376|5|1),INTRON(MODIFIER|||||CDH12|retained_intron|CODING|ENST00000517378|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:0:0:0:0,0:0,0:30,30:0,0	112:0:0:0:0,0:0,0:106,106:6,6
5	23288253	.	T	C	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:0:0:0:0,0:0,0:0,0:34,34	83:1:0:0:0,0:10,10:0,0:72,73
5	26078390	.	A	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:0:0:0:32,32:0,0:0,0:0,0	112:0:0:0:103,105:9,9:0,0:0,0
5	26227273	.	C	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:0:0:0:0,0:36,37:0,0:0,0	113:2:0:0:0,0:104,107:0,0:7,7
5	26787750	.	T	C	.	PASS	NT=ref;QSS=25;QSS_NT=25;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	49:0:0:0:0,0:0,0:0,0:49,49	100:2:0:0:0,0:6,6:1,1:91,96
5	26947233	.	G	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||131|CDH9|protein_coding|CODING|ENST00000513289|2|1),INTRON(MODIFIER||||789|CDH9|protein_coding|CODING|ENST00000231021|2|1),INTRON(MODIFIER||||80|CDH9|protein_coding|CODING|ENST00000511822|3|1),INTRON(MODIFIER|||||CDH9|retained_intron|CODING|ENST00000505045|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:0:0:0:0,0:0,0:30,30:0,0	106:0:0:0:8,8:0,0:98,98:0,0
5	27147114	.	A	C	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:0:0:0:39,39:0,0:0,0:0,0	92:3:0:0:85,87:4,5:0,1:0,0
5	27910891	.	T	G	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:0:0:0:0,0:0,0:0,0:37,37	102:0:0:0:0,0:0,0:8,8:94,94
5	28396641	.	C	G	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	53:1:0:0:0,0:52,53:0,0:0,0	88:1:0:0:0,0:83,85:4,4:0,0
5	28762052	.	A	G	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:1:0:0:34,34:0,0:0,0:0,0	112:1:0:0:100,101:0,0:10,10:1,1
5	29612036	.	G	A	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:0:0:0:0,0:0,0:40,40:0,0	105:0:0:0:7,7:0,0:98,98:0,0
5	30220535	.	T	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:0:0:0:0,0:0,0:0,0:29,29	105:2:0:0:0,0:13,13:0,0:90,92
5	34617034	.	G	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:1:0:0:0,0:0,0:31,32:0,0	106:0:0:0:0,0:0,0:98,98:8,8
5	36467665	.	C	T	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=CC->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	42:0:0:0:0,0:42,43:0,0:0,1	115:1:0:0:0,0:107,108:0,0:7,18
5	36467694	.	A	G	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=AA->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	41:0:0:0:41,41:0,0:0,1:0,0	118:1:0:0:110,111:1,1:6,17:0,0
5	37296192	.	C	T	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||NUP155|retained_intron|CODING|ENST00000515054||1),INTRON(MODIFIER||||1327|NUP155|protein_coding|CODING|ENST00000513532|31|1),INTRON(MODIFIER||||1332|NUP155|protein_coding|CODING|ENST00000381843|32|1),INTRON(MODIFIER||||1391|NUP155|protein_coding|CODING|ENST00000231498|32|1),INTRON(MODIFIER|||||NUP155|processed_transcript|CODING|ENST00000502533|11|1),UPSTREAM(MODIFIER|||||NUP155|retained_intron|CODING|ENST00000508182||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	61:4:0:0:0,0:57,70:0,0:0,0	135:7:0:0:0,0:121,142:1,1:6,8
5	40146804	.	C	A	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	44:0:0:0:0,0:44,44:0,0:0,0	112:0:0:0:12,12:100,101:0,0:0,0
5	40748056	.	T	C	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||262|TTC33|protein_coding|CODING|ENST00000337702|1|1),INTRON(MODIFIER|||||TTC33|processed_transcript|CODING|ENST00000503936|1|1),INTRON(MODIFIER|||||TTC33|processed_transcript|CODING|ENST00000504251|1|1),INTRON(MODIFIER|||||TTC33|processed_transcript|CODING|ENST00000511730|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:1:0:0:0,0:0,0:1,2:34,34	110:2:0:0:0,0:10,12:0,0:98,100
5	42660760	.	G	A	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||GHR|nonsense_mediated_decay|CODING|ENST00000513671||1),INTRON(MODIFIER||||451|GHR|protein_coding|CODING|ENST00000537449|2|1),INTRON(MODIFIER||||616|GHR|protein_coding|CODING|ENST00000357703|2|1),INTRON(MODIFIER||||638|GHR|protein_coding|CODING|ENST00000230882|3|1),INTRON(MODIFIER|||||GHR|nonsense_mediated_decay|CODING|ENST00000511135|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:0:0:0:0,0:0,0:39,39:0,0	114:0:0:0:7,7:0,0:107,107:0,0
5	43239828	rs113793965	C	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||436|AC114947.1|protein_coding|CODING|ENST00000326035|1|1),INTRON(MODIFIER||||436|AC114947.1|protein_coding|CODING|ENST00000512796|1|1),INTRON(MODIFIER|||||AC114947.1|processed_transcript|CODING|ENST00000440285|1|1),INTRON(MODIFIER|||||AC114947.1|processed_transcript|CODING|ENST00000509362|1|1),INTRON(MODIFIER|||||AC114947.1|processed_transcript|CODING|ENST00000513797|2|1);RSPOS=43239828;dbSNPBuildID=132;SSR=0;SAO=0;VP=050000080001000102000100;GENEINFO=NIM1:167359;WGT=1;VC=SNV;INT;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:0:0:0:0,0:35,36:0,0:0,0	87:3:0:0:0,0:79,82:0,0:5,5
5	44240507	.	T	G	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:0:0:0:0,0:0,0:0,0:38,38	102:0:0:0:0,0:0,0:10,10:92,92
5	44391292	.	A	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-473L15.2|processed_transcript|NON_CODING|ENST00000502457|1|1),UPSTREAM(MODIFIER||||208|FGF10|protein_coding|CODING|ENST00000264664||1),UPSTREAM(MODIFIER||||65|FGF10|protein_coding|CODING|ENST00000513107||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:0:0:0:32,32:0,0:0,0:0,0	111:0:0:0:102,102:0,0:0,0:9,9
5	45126785	.	C	T	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	44:2:0:0:0,0:42,44:0,0:0,0	121:0:0:0:0,0:113,113:0,0:8,8
5	45836691	.	T	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:0:0:0:0,0:0,0:0,0:34,34	107:0:0:0:0,0:5,5:0,0:102,103
5	45836707	.	G	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:0:0:0:0,0:0,0:34,34:0,0	115:0:0:0:0,0:0,0:109,110:6,7
5	45836750	.	C	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:0:0:0:0,0:29,29:0,0:0,0	116:1:0:0:0,0:107,108:0,0:8,10
5	45836791	.	C	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:0:0:0:0,0:35,35:0,0:0,0	103:0:0:0:0,0:97,97:0,0:6,8
5	46255988	.	T	A	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	42:0:0:0:0,0:0,0:0,0:42,42	91:0:0:0:5,5:0,0:0,0:86,86
5	46289609	.	A	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:0:0:0:35,35:0,0:0,0:0,1	112:2:0:0:104,105:0,0:0,0:6,8
5	46344223	.	G	T	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=GG->GT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	50:2:0:0:0,0:0,0:48,64:0,1	119:4:0:0:0,1:0,0:103,150:12,15
5	46392738	.	T	C	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=TT->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	56:1:0:0:0,1:0,0:0,0:55,82	118:5:0:0:0,0:6,10:0,0:107,187
5	49438984	.	C	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	63:1:0:0:0,2:61,73:1,1:0,0	186:1:0:0:10,12:175,200:0,0:0,1
5	49438988	.	A	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	63:1:0:0:62,73:0,0:0,0:0,0	178:1:0:0:167,190:1,2:0,0:9,11
5	49439094	.	A	G	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	57:6:0:0:50,72:0,0:1,2:0,0	158:6:0:0:143,194:0,0:9,10:0,1
5	49479183	.	G	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	47:4:0:0:0,3:0,1:43,69:0,0	127:9:0:0:5,19:0,1:113,165:0,3
5	49479190	.	G	T	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	45:3:0:0:0,0:0,1:42,67:0,3	127:10:0:0:0,2:3,15:108,150:6,20
5	49488533	.	C	T	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:0:0:0:0,0:39,57:0,0:0,1	119:9:0:0:0,2:105,172:0,0:5,16
5	49539288	rs202118952	C	G	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=49539288;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	57:22:0:0:1,1:34,89:0,4:0,1	153:42:0:0:0,0:103,285:8,28:0,1
5	51396591	rs199501089	A	G	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=51396591;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:0:0:0:35,35:0,0:0,0:0,0	133:2:0:0:126,128:0,0:5,7:0,1
5	51396606	rs200534013	C	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=51396606;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:0:0:0:0,0:35,35:0,0:0,0	139:1:0:0:0,0:133,135:0,0:5,7
5	51918511	.	A	G	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	44:1:0:0:43,44:0,0:0,0:0,0	91:2:0:0:84,86:0,0:5,5:0,0
5	52162080	.	C	A	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1179|ITGA1|protein_coding|CODING|ENST00000282588|6|1),INTRON(MODIFIER|||||ITGA1|processed_transcript|CODING|ENST00000509049|2|1),INTRON(MODIFIER|||||ITGA1|processed_transcript|CODING|ENST00000513737|4|1),INTRON(MODIFIER|||||ITGA1|processed_transcript|CODING|ENST00000514262|4|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:0:0:0:0,0:38,38:0,0:0,0	108:1:0:0:7,7:100,103:0,0:0,0
5	52828606	.	A	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	27:0:0:0:27,27:0,0:0,0:0,0	118:0:0:0:110,111:1,1:7,7:0,0
5	53223290	.	C	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||157|ARL15|protein_coding|CODING|ENST00000507646|4|1),INTRON(MODIFIER||||204|ARL15|protein_coding|CODING|ENST00000504924|4|1),INTRON(MODIFIER|||||ARL15|processed_transcript|CODING|ENST00000502271|4|1),INTRON(MODIFIER|||||ARL15|processed_transcript|CODING|ENST00000510591|4|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:1:0:0:0,0:38,39:0,0:0,0	94:1:0:0:5,5:88,89:0,0:0,0
5	54246288	.	A	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:0:0:0:32,32:0,0:0,0:0,0	79:0:0:0:74,74:0,0:0,0:5,5
5	54492483	.	C	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->AC;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:4:0:0:0,1:35,38:0,0:0,0	72:4:0:0:8,11:60,61:0,0:0,0
5	55980421	.	C	G	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	42:0:0:0:0,0:42,42:0,0:0,0	85:0:0:0:0,0:75,75:10,10:0,0
5	57218036	.	T	C	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	42:0:0:0:0,0:0,0:0,0:42,42	120:0:0:0:0,0:6,6:0,0:114,114
5	57416666	.	T	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||CTD-2037L6.2|lincRNA|NON_CODING|ENST00000505861|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:0:0:0:0,0:0,0:0,0:31,31	99:0:0:0:0,0:6,6:0,0:93,93
5	57587548	.	C	A	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:0:0:0:0,0:36,37:0,0:0,0	87:0:0:0:7,7:80,81:0,0:0,0
5	58733358	.	C	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||219|PDE4D|protein_coding|CODING|ENST00000502575|1|1),INTRON(MODIFIER||||421|PDE4D|protein_coding|CODING|ENST00000505453|1|1),INTRON(MODIFIER||||673|PDE4D|protein_coding|CODING|ENST00000360047|1|1),INTRON(MODIFIER||||745|PDE4D|protein_coding|CODING|ENST00000507116|1|1),INTRON(MODIFIER||||748|PDE4D|protein_coding|CODING|ENST00000502484|3|1),INTRON(MODIFIER||||748|PDE4D|protein_coding|CODING|ENST00000546160|2|1),INTRON(MODIFIER||||809|PDE4D|protein_coding|CODING|ENST00000340635|1|1),INTRON(MODIFIER|||||PDE4D|nonsense_mediated_decay|CODING|ENST00000309641|1|1),INTRON(MODIFIER|||||PDE4D|processed_transcript|CODING|ENST00000405053|1|1),INTRON(MODIFIER|||||PDE4D|retained_intron|CODING|ENST00000514231|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:1:0:0:0,1:35,35:0,0:0,0	107:2:0:0:0,0:94,96:0,0:11,11
5	58750450	rs1813481	C	T	.	PASS	NT=ref;QSS=23;QSS_NT=23;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||219|PDE4D|protein_coding|CODING|ENST00000502575|1|1),INTRON(MODIFIER||||421|PDE4D|protein_coding|CODING|ENST00000505453|1|1),INTRON(MODIFIER||||673|PDE4D|protein_coding|CODING|ENST00000360047|1|1),INTRON(MODIFIER||||745|PDE4D|protein_coding|CODING|ENST00000507116|1|1),INTRON(MODIFIER||||748|PDE4D|protein_coding|CODING|ENST00000502484|3|1),INTRON(MODIFIER||||748|PDE4D|protein_coding|CODING|ENST00000546160|2|1),INTRON(MODIFIER||||809|PDE4D|protein_coding|CODING|ENST00000340635|1|1),INTRON(MODIFIER|||||PDE4D|nonsense_mediated_decay|CODING|ENST00000309641|1|1),INTRON(MODIFIER|||||PDE4D|processed_transcript|CODING|ENST00000405053|1|1),INTRON(MODIFIER|||||PDE4D|retained_intron|CODING|ENST00000514231|2|1);RSPOS=58750450;RV;GMAF=0.0321;dbSNPBuildID=92;SSR=0;SAO=0;VP=05010008000907011e000100;GENEINFO=PDE4D:5144;WGT=1;VC=SNV;SLO;INT;CFL;VLD;G5A;G5;GNO;KGPhase1;KGPilot123;KGPROD;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	47:0:0:0:0,0:47,47:0,0:0,0	90:1:0:0:1,1:83,84:0,0:5,5
5	59014728	.	T	A	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||219|PDE4D|protein_coding|CODING|ENST00000502575|1|1),INTRON(MODIFIER||||745|PDE4D|protein_coding|CODING|ENST00000507116|1|1),INTRON(MODIFIER||||748|PDE4D|protein_coding|CODING|ENST00000502484|3|1),INTRON(MODIFIER||||748|PDE4D|protein_coding|CODING|ENST00000546160|2|1),INTRON(MODIFIER||||809|PDE4D|protein_coding|CODING|ENST00000340635|1|1),INTRON(MODIFIER|||||PDE4D|nonsense_mediated_decay|CODING|ENST00000309641|1|1),INTRON(MODIFIER|||||PDE4D|processed_transcript|CODING|ENST00000405053|1|1),INTRON(MODIFIER|||||PDE4D|processed_transcript|CODING|ENST00000512069|1|1),INTRON(MODIFIER|||||PDE4D|retained_intron|CODING|ENST00000514231|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:0:0:0:0,0:0,0:0,0:39,39	86:1:0:0:8,8:0,0:0,0:77,78
5	61730915	.	A	G	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1015|IPO11|protein_coding|CODING|ENST00000409296|1|1),INTRON(MODIFIER||||147|IPO11|protein_coding|CODING|ENST00000514647|1|1),INTRON(MODIFIER||||161|IPO11|protein_coding|CODING|ENST00000506200|1|1),INTRON(MODIFIER||||62|IPO11|protein_coding|CODING|ENST00000505902|2|1),INTRON(MODIFIER||||975|IPO11|protein_coding|CODING|ENST00000325324|1|1),INTRON(MODIFIER|||||IPO11|nonsense_mediated_decay|CODING|ENST00000424533|1|1),INTRON(MODIFIER|||||KIF2A|processed_transcript|CODING|ENST00000509663|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:0:0:0:36,37:0,0:0,0:0,0	128:6:0:0:113,128:1,2:8,8:0,0
5	64153726	.	A	G	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||472|CWC27|protein_coding|CODING|ENST00000381070|10|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	42:0:0:0:42,43:0,0:0,0:0,0	92:2:0:0:80,84:1,1:9,11:0,0
5	65405188	.	C	G	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:0:0:0:0,0:33,33:0,0:0,0	102:1:0:0:0,0:96,99:5,5:0,0
5	65409416	.	G	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:0:0:0:0,0:0,0:31,31:0,0	103:1:0:0:9,9:0,0:93,94:0,0
5	66623784	rs139543655	G	A	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=66623784;GMAF=0.1575;dbSNPBuildID=134;SSR=0;SAO=0;VP=050000000005000014000100;WGT=1;VC=SNV;ASP;KGPhase1;KGPROD	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:1:2:0:0,1:0,0:35,35:0,0	101:11:1:0:10,21:0,0:80,81:0,0
5	67045138	.	T	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-434D9.1|processed_transcript|NON_CODING|ENST00000503106|3|1),INTRON(MODIFIER|||||RP11-434D9.1|processed_transcript|NON_CODING|ENST00000514368|1|1),INTRON(MODIFIER|||||RP11-83M16.6|lincRNA|NON_CODING|ENST00000506819|2|1),INTRON(MODIFIER|||||RP11-83M16.6|lincRNA|NON_CODING|ENST00000510621|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	27:0:0:0:0,0:0,0:0,0:27,28	68:2:0:0:0,0:0,1:5,5:61,62
5	67156135	.	A	C	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-434D9.2|lincRNA|NON_CODING|ENST00000514791|2|1),INTRON(MODIFIER|||||RP11-83M16.6|lincRNA|NON_CODING|ENST00000510621|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:0:0:0:34,34:0,0:0,0:0,0	127:2:0:0:120,122:5,5:0,0:0,0
5	68270211	.	C	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-141O11.2|lincRNA|NON_CODING|ENST00000505371|1|1),UPSTREAM(MODIFIER|||||7SK|misc_RNA|NON_CODING|ENST00000410830||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:0:0:0:0,0:31,31:0,0:0,0	110:0:0:0:8,8:102,102:0,0:0,0
5	68906157	.	A	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=AA->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER|||||GUSBP3|unprocessed_pseudogene|NON_CODING|ENST00000380759|7|1),INTRON(MODIFIER|||||RP11-848G14.2|processed_transcript|NON_CODING|ENST00000510264|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	24:0:0:0:24,26:0,0:0,0:0,0	61:0:0:0:52,61:0,0:9,9:0,0
5	69612514	.	A	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:0:0:0:29,31:0,0:0,0:0,0	83:0:5:0:76,93:0,0:7,8:0,0
5	71995254	.	A	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||CTC-347C20.1|lincRNA|NON_CODING|ENST00000508217|2|1),INTRON(MODIFIER|||||CTC-347C20.1|lincRNA|NON_CODING|ENST00000513767|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:0:0:0:32,33:0,0:0,0:0,0	107:1:0:0:99,100:6,6:0,0:1,1
5	73628107	.	G	C	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||CTD-2275D24.2|lincRNA|NON_CODING|ENST00000508083||1),INTRON(MODIFIER|||||CTD-2275D24.1|lincRNA|NON_CODING|ENST00000512458|1|1),INTRON(MODIFIER|||||CTD-2275D24.3|lincRNA|NON_CODING|ENST00000506612|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	43:0:0:0:0,0:0,0:43,43:0,0	108:3:0:0:0,0:8,9:97,98:0,1
5	73714642	.	C	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||CTC-419K13.1|lincRNA|NON_CODING|ENST00000507781|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:3:0:0:0,0:34,37:0,0:0,0	109:2:0:0:0,0:96,98:0,0:11,11
5	75012306	.	A	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||161|POC5|protein_coding|CODING|ENST00000503835|1|1),INTRON(MODIFIER||||31|POC5|protein_coding|CODING|ENST00000506164|1|1),INTRON(MODIFIER||||399|POC5|protein_coding|CODING|ENST00000380475|1|1),INTRON(MODIFIER||||49|POC5|protein_coding|CODING|ENST00000502826|1|1),INTRON(MODIFIER||||547|POC5|protein_coding|CODING|ENST00000514838|1|1),INTRON(MODIFIER||||575|POC5|protein_coding|CODING|ENST00000428202|1|1),INTRON(MODIFIER|||||POC5|nonsense_mediated_decay|CODING|ENST00000515285|1|1),INTRON(MODIFIER|||||POC5|retained_intron|CODING|ENST00000507421|1|1),INTRON(MODIFIER|||||POC5|retained_intron|CODING|ENST00000508467|1|1),INTRON(MODIFIER|||||POC5|retained_intron|CODING|ENST00000512125|1|1),UPSTREAM(MODIFIER||||399|POC5|protein_coding|CODING|ENST00000510798||1),UPSTREAM(MODIFIER||||550|POC5|protein_coding|CODING|ENST00000446329||1),UPSTREAM(MODIFIER|||||POC5|processed_transcript|CODING|ENST00000504862||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:1:0:0:35,36:0,0:0,0:0,0	107:3:0:0:96,99:0,0:0,0:8,8
5	75919000	.	C	G	.	PASS	NT=ref;QSS=24;QSS_NT=24;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1071|IQGAP2|protein_coding|CODING|ENST00000396234|2|1),INTRON(MODIFIER||||1071|IQGAP2|protein_coding|CODING|ENST00000502745|2|1),INTRON(MODIFIER||||1077|IQGAP2|protein_coding|CODING|ENST00000379730|13|1),INTRON(MODIFIER||||1401|IQGAP2|protein_coding|CODING|ENST00000505766|12|1),INTRON(MODIFIER||||1575|IQGAP2|protein_coding|CODING|ENST00000274364|13|1),INTRON(MODIFIER||||166|IQGAP2|protein_coding|CODING|ENST00000509074|2|1),INTRON(MODIFIER||||352|F2RL2|protein_coding|CODING|ENST00000504899|1|1),INTRON(MODIFIER||||508|IQGAP2|protein_coding|CODING|ENST00000514001|2|1),INTRON(MODIFIER||||823|IQGAP2|protein_coding|CODING|ENST00000514350|13|1),INTRON(MODIFIER|||||IQGAP2|nonsense_mediated_decay|CODING|ENST00000504254|3|1),INTRON(MODIFIER|||||IQGAP2|nonsense_mediated_decay|CODING|ENST00000513534|2|1),INTRON(MODIFIER|||||IQGAP2|processed_transcript|CODING|ENST00000515505|1|1),NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|tGt/tCt|C19S|374|F2RL2|protein_coding|CODING|ENST00000296641|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	48:0:0:0:0,0:48,48:0,0:0,0	107:1:0:0:0,0:98,99:8,8:0,0
5	80153411	.	T	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1137|MSH3|protein_coding|CODING|ENST00000265081|21|1),UPSTREAM(MODIFIER|||||RP11-241J12.1|processed_pseudogene|NON_CODING|ENST00000492984||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:0:0:0:0,0:0,1:0,0:32,32	93:0:0:0:0,0:6,20:0,0:87,87
5	81071430	.	C	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:0:0:0:0,0:30,30:0,0:0,0	100:0:0:0:12,12:88,88:0,0:0,0
5	83582365	.	G	A	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||470|EDIL3|protein_coding|CODING|ENST00000380138|1|1),INTRON(MODIFIER||||480|EDIL3|protein_coding|CODING|ENST00000296591|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:2:0:0:0,0:0,0:37,39:0,0	102:0:0:0:8,8:0,0:94,94:0,0
5	83985056	.	G	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:0:0:0:0,0:0,0:29,29:0,0	87:0:0:0:5,5:0,0:81,83:1,1
5	85351165	.	T	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:0:1:0:0,0:0,1:0,0:30,39	136:8:5:0:0,0:9,12:0,0:119,154
5	85465783	.	A	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:0:0:0:36,36:0,0:0,0:0,0	89:0:0:0:85,85:0,0:0,0:4,4
5	85465784	.	G	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:0:0:0:0,0:0,0:36,36:0,0	90:0:0:0:0,0:0,0:86,86:4,4
5	87153083	.	G	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	27:0:0:0:0,0:0,0:27,38:0,0	85:0:0:0:0,0:6,6:79,104:0,0
5	87233351	.	G	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:0:0:0:0,0:0,0:32,32:0,0	89:1:0:0:4,4:0,0:83,86:1,1
5	88482614	.	G	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||CTC-454M9.1|processed_transcript|NON_CODING|ENST00000512585|5|1),INTRON(MODIFIER|||||CTC-454M9.1|processed_transcript|NON_CODING|ENST00000514092|4|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:0:0:0:0,0:0,0:32,32:0,0	84:2:0:0:6,6:0,0:76,79:0,0
5	88757125	.	G	A	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||CTC-454M9.1|processed_transcript|NON_CODING|ENST00000508742|1|1),INTRON(MODIFIER|||||CTC-454M9.1|processed_transcript|NON_CODING|ENST00000514092|5|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:0:0:0:0,0:0,0:39,39:0,0	117:1:0:0:6,6:0,0:110,111:0,0
5	89052821	.	G	A	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:0:0:0:0,0:0,0:39,39:0,0	102:1:0:0:12,12:0,0:89,90:0,0
5	89416188	.	A	G	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:0:0:0:37,37:0,0:0,0:0,0	115:1:0:0:105,105:0,0:9,9:0,1
5	89992538	.	T	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||6306|GPR98|protein_coding|CODING|ENST00000405460|33|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:0:0:0:1,1:0,0:0,0:30,30	108:1:0:0:0,0:7,7:0,0:100,101
5	93108471	.	G	A	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||FAM172A|retained_intron|CODING|ENST00000511139||1),INTRON(MODIFIER||||269|FAM172A|protein_coding|CODING|ENST00000509739|7|1),INTRON(MODIFIER||||306|FAM172A|protein_coding|CODING|ENST00000505869|8|1),INTRON(MODIFIER||||370|FAM172A|protein_coding|CODING|ENST00000509163|9|1),INTRON(MODIFIER||||416|FAM172A|protein_coding|CODING|ENST00000395965|10|1),INTRON(MODIFIER|||||FAM172A|nonsense_mediated_decay|CODING|ENST00000502503|9|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	42:0:0:0:0,0:0,0:42,42:0,0	96:0:0:0:7,7:0,0:89,89:0,0
5	93808222	.	G	A	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1275|KIAA0825|protein_coding|CODING|ENST00000427991|6|1),INTRON(MODIFIER||||1275|KIAA0825|protein_coding|CODING|ENST00000513200|8|1),INTRON(MODIFIER||||938|KIAA0825|protein_coding|CODING|ENST00000312498|8|1),INTRON(MODIFIER|||||KIAA0825|retained_intron|CODING|ENST00000504117|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:0:0:0:0,0:0,0:34,35:0,0	96:0:0:0:7,7:0,0:89,89:0,0
5	93813627	.	C	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1275|KIAA0825|protein_coding|CODING|ENST00000427991|4|1),INTRON(MODIFIER||||1275|KIAA0825|protein_coding|CODING|ENST00000513200|6|1),INTRON(MODIFIER||||938|KIAA0825|protein_coding|CODING|ENST00000312498|6|1),UPSTREAM(MODIFIER|||||KIAA0825|retained_intron|CODING|ENST00000504117||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:0:0:0:0,0:34,34:0,0:0,0	105:0:0:0:0,0:98,98:1,1:6,6
5	97750209	.	A	G	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||RP11-474J18.1|processed_pseudogene|NON_CODING|ENST00000515438||1),UPSTREAM(MODIFIER|||||RP11-474J18.2|processed_pseudogene|NON_CODING|ENST00000515611||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:1:0:0:35,36:0,0:0,0:0,0	96:1:0:0:90,90:0,0:5,6:0,0
5	98613670	.	G	C	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:0:0:0:0,0:0,0:36,36:0,0	104:1:0:0:0,0:6,6:97,99:0,0
5	99895653	.	G	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->CG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER||||190|FAM174A|protein_coding|CODING|ENST00000312637|1|1),INTRON(MODIFIER|||||FAM174A|processed_transcript|CODING|ENST00000505111|2|1),INTRON(MODIFIER|||||FAM174A|processed_transcript|CODING|ENST00000509040|1|1),UPSTREAM(MODIFIER|||||FAM174A|processed_transcript|CODING|ENST00000505792||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	50:0:0:0:0,0:0,1:50,52:0,0	133:2:0:0:0,0:7,8:124,128:0,0
5	100731508	.	A	G	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:0:0:0:34,34:0,0:0,0:0,0	97:1:0:0:88,90:0,0:8,8:0,0
5	101233889	.	C	G	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:0:0:0:0,0:31,31:0,0:0,0	109:0:0:0:0,0:99,99:10,10:0,0
5	102562101	.	C	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:0:0:0:0,0:32,32:0,0:0,0	113:0:0:0:5,5:108,109:0,0:0,0
5	103235942	.	A	G	.	PASS	NT=ref;QSS=25;QSS_NT=25;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	50:0:0:0:50,50:0,0:0,0:0,0	109:0:0:0:100,100:0,0:9,9:0,0
5	103282343	.	A	C	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:0:0:0:35,35:0,0:0,0:0,0	124:2:0:0:110,111:12,13:0,0:0,0
5	104141442	.	G	A	.	PASS	NT=ref;QSS=23;QSS_NT=23;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-6N13.1|lincRNA|NON_CODING|ENST00000503650|2|1),INTRON(MODIFIER|||||RP11-6N13.1|lincRNA|NON_CODING|ENST00000524336|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	45:0:0:0:0,0:0,0:45,45:0,0	104:2:0:0:8,8:0,0:94,96:0,0
5	104218647	.	G	A	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-6N13.1|lincRNA|NON_CODING|ENST00000503650|2|1),INTRON(MODIFIER|||||RP11-6N13.1|lincRNA|NON_CODING|ENST00000524336|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:0:0:0:0,0:0,0:39,39:0,0	86:0:0:0:5,5:0,0:81,83:0,0
5	104974983	.	T	G	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:0:0:0:0,0:0,0:0,0:38,38	117:0:0:0:0,0:0,0:11,11:106,106
5	106076659	.	G	T	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:0:0:0:0,0:0,0:40,40:0,0	91:1:0:0:1,1:0,0:81,83:8,8
5	106514304	.	G	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:1:0:0:0,0:0,0:29,30:0,0	91:0:0:0:9,9:0,0:82,82:0,0
5	106695254	.	G	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:1:0:0:0,0:0,0:31,32:0,0	111:0:0:0:0,0:5,5:106,106:0,0
5	108678143	.	G	C	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||708|PJA2|protein_coding|CODING|ENST00000361189|9|1),INTRON(MODIFIER||||708|PJA2|protein_coding|CODING|ENST00000361557|8|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	27:2:0:0:0,0:1,1:24,35:0,0	29:0:0:0:0,0:8,9:21,40:0,1
5	109945957	rs55908882	G	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||506|TMEM232|protein_coding|CODING|ENST00000429839|8|1),INTRON(MODIFIER||||657|TMEM232|protein_coding|CODING|ENST00000455884|8|1),INTRON(MODIFIER|||||TMEM232|nonsense_mediated_decay|CODING|ENST00000512003|6|1),INTRON(MODIFIER|||||TMEM232|processed_transcript|CODING|ENST00000515363|3|1),INTRON(MODIFIER|||||TMEM232|processed_transcript|CODING|ENST00000515518|7|1),INTRON(MODIFIER|||||TMEM232|retained_intron|CODING|ENST00000508571|2|1);RSPOS=109945957;dbSNPBuildID=129;SSR=0;SAO=0;VP=050000080005000002000100;GENEINFO=TMEM232:642987;WGT=1;VC=SNV;INT;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:1:0:0:0,0:0,0:39,51:0,0	70:4:0:0:5,7:0,0:61,97:0,0
5	110193730	.	T	A	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:1:0:0:0,0:0,0:0,0:36,37	127:1:0:0:10,10:0,0:1,1:115,117
5	110277088	.	A	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:0:0:0:29,29:0,0:0,0:0,0	119:1:0:0:111,112:0,0:0,0:7,7
5	110616526	rs117513528	G	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||141|CAMK4|protein_coding|CODING|ENST00000508074|2|1),INTRON(MODIFIER||||473|CAMK4|protein_coding|CODING|ENST00000282356|1|1),INTRON(MODIFIER||||473|CAMK4|protein_coding|CODING|ENST00000512453|2|1),INTRON(MODIFIER|||||CAMK4|nonsense_mediated_decay|CODING|ENST00000504544|1|1),INTRON(MODIFIER|||||CAMK4|nonsense_mediated_decay|CODING|ENST00000514007|1|1),INTRON(MODIFIER|||||CAMK4|nonsense_mediated_decay|CODING|ENST00000515231|1|1),INTRON(MODIFIER|||||CAMK4|processed_transcript|CODING|ENST00000504090|1|1),INTRON(MODIFIER|||||CAMK4|processed_transcript|CODING|ENST00000509408|1|1),INTRON(MODIFIER|||||CTC-499J9.1|antisense|NON_CODING|ENST00000504081|2|1);RSPOS=110616526;GMAF=0.006;dbSNPBuildID=132;SSR=0;SAO=0;VP=050000080005040416000100;GENEINFO=CAMK4:814;WGT=1;VC=SNV;INT;ASP;VLD;HD;KGPhase1;KGPROD;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:0:0:0:0,0:0,0:34,34:0,0	113:1:0:0:6,6:1,1:105,106:0,0
5	113468817	.	G	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:0:0:0:0,0:0,0:32,32:0,0	109:1:0:0:0,0:0,0:103,104:5,5
5	113580305	.	G	A	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:4:0:0:0,0:0,0:35,39:0,0	89:5:0:0:10,10:0,0:74,79:0,0
5	116181391	rs12519375	G	A	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=116181391;GMAF=0.2573;dbSNPBuildID=120;SSR=0;SAO=0;VP=05010000000507011e000100;WGT=1;VC=SNV;SLO;ASP;VLD;G5A;G5;GNO;KGPhase1;KGPilot123;KGPROD;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	44:1:0:0:0,0:0,0:43,44:0,0	99:1:0:0:7,8:0,0:91,91:0,0
5	116197524	rs73259176	C	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=116197524;GMAF=0.0087;dbSNPBuildID=130;SSR=0;SAO=0;VP=05000000000104011e000100;WGT=1;VC=SNV;VLD;GNO;KGPhase1;KGPilot123;KGPROD;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:0:0:0:0,0:31,31:0,0:0,0	80:1:0:0:0,0:73,74:0,0:6,6
5	116877420	.	T	G	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||CTC-504A5.1|lincRNA|NON_CODING|ENST00000514186|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	45:1:0:0:0,0:0,0:0,0:44,48	120:1:0:0:0,0:0,0:10,13:109,117
5	118127918	.	T	G	.	PASS	NT=ref;QSS=23;QSS_NT=23;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	45:0:0:0:0,0:0,0:0,0:45,45	90:2:0:0:0,0:0,0:9,10:79,81
5	118235460	.	A	G	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||202|DTWD2|protein_coding|CODING|ENST00000515439|2|1),INTRON(MODIFIER||||232|DTWD2|protein_coding|CODING|ENST00000304058|4|1),INTRON(MODIFIER||||298|DTWD2|protein_coding|CODING|ENST00000510708|4|1),INTRON(MODIFIER|||||DTWD2|nonsense_mediated_decay|CODING|ENST00000506980|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:0:0:0:39,40:0,0:0,0:0,0	103:2:0:0:88,89:0,0:13,14:0,0
5	119593783	.	A	T	.	PASS	NT=ref;QSS=25;QSS_NT=25;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||CTC-552D5.1|lincRNA|NON_CODING|ENST00000514240|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	50:0:0:0:50,52:0,0:0,0:0,0	112:1:0:0:102,102:0,0:0,0:9,10
5	120306972	.	C	A	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:0:0:0:0,0:36,37:0,0:0,0	108:0:0:0:6,6:102,102:0,0:0,0
5	120396109	.	T	A	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=EXON(MODIFIER|||||CTD-2613O8.1|processed_pseudogene|NON_CODING|ENST00000513196|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:0:0:0:0,0:0,0:0,0:34,34	119:1:0:0:10,10:0,0:0,0:108,109
5	120793064	.	T	G	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:0:0:0:0,0:0,0:0,0:34,34	85:0:0:0:0,0:0,0:10,10:75,76
5	122104139	rs199823348	A	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=122104139;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:1:0:0:37,41:0,0:0,1:0,0	85:0:0:0:78,89:1,1:6,7:0,0
5	124105516	.	G	A	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:0:0:0:0,0:0,0:40,40:0,0	103:1:0:0:9,10:0,0:93,97:0,0
5	125972026	.	T	C	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||134|C5orf48|protein_coding|CODING|ENST00000357147||1),DOWNSTREAM(MODIFIER|||||C5orf48|retained_intron|CODING|ENST00000506701||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	43:1:0:0:0,0:0,0:0,0:42,43	100:1:0:0:0,0:6,6:0,0:93,94
5	126338950	.	A	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER||||253|MARCH3|protein_coding|CODING|ENST00000308660|1|1),INTRON(MODIFIER|||||MARCH3|processed_transcript|CODING|ENST00000502289|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	48:0:0:0:48,50:0,0:0,0:0,0	98:2:0:0:91,92:0,1:0,0:5,5
5	128552266	.	G	A	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:0:0:0:0,0:0,0:39,39:0,0	88:1:0:0:11,11:0,0:76,78:0,0
5	128570902	rs201801077	A	C	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=128570902;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:0:0:0:39,41:0,0:0,0:0,0	98:2:0:0:91,97:5,8:0,0:0,0
5	128570908	rs200251271	T	A	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=128570908;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:0:0:0:0,0:0,0:0,0:38,40	98:2:0:0:5,8:0,0:0,0:91,97
5	128570932	rs201377674	T	G	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=128570932;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:0:0:0:0,0:0,0:0,0:36,38	98:0:0:0:0,0:0,0:6,8:92,97
5	130710001	.	G	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||57|CDC42SE2|protein_coding|CODING|ENST00000503291|3|1),INTRON(MODIFIER||||84|CDC42SE2|protein_coding|CODING|ENST00000360515|3|1),INTRON(MODIFIER||||84|CDC42SE2|protein_coding|CODING|ENST00000395246|2|1),INTRON(MODIFIER||||84|CDC42SE2|protein_coding|CODING|ENST00000505065|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:0:0:0:0,0:0,0:34,34:0,0	99:1:0:0:0,0:0,0:91,92:7,7
5	132961557	.	A	G	.	PASS	NT=ref;QSS=24;QSS_NT=24;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=EXON(MODIFIER|||||AC005195.1|miRNA|NON_CODING|ENST00000579330|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	54:6:0:0:48,116:0,0:0,0:0,0	150:32:1:0:109,335:1,1:8,13:0,0
5	133425382	rs28377193	C	T	.	PASS	NT=ref;QSS=24;QSS_NT=24;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=133425382;GMAF=0.0962;dbSNPBuildID=125;SSR=0;SAO=0;VP=050000000001040016000100;WGT=1;VC=SNV;VLD;KGPhase1;KGPROD;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	49:1:0:0:0,0:48,48:0,0:0,0	86:1:0:0:0,0:79,79:0,1:6,6
5	136267123	.	T	C	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	51:0:0:0:0,0:1,1:0,0:50,50	105:0:0:0:0,0:9,9:0,0:96,96
5	136419004	.	G	C	.	PASS	NT=ref;QSS=27;QSS_NT=27;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||439|SPOCK1|protein_coding|CODING|ENST00000282223|4|1),INTRON(MODIFIER||||439|SPOCK1|protein_coding|CODING|ENST00000394945|5|1),INTRON(MODIFIER||||66|SPOCK1|protein_coding|CODING|ENST00000510689|4|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	53:0:0:0:0,0:0,0:53,53:0,0	95:1:0:0:0,0:8,8:86,87:0,0
5	137166136	.	C	A	.	PASS	NT=ref;QSS=23;QSS_NT=23;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-381K20.2|antisense|NON_CODING|ENST00000514616|4|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	46:0:0:0:0,0:46,47:0,0:0,0	120:1:0:0:10,10:109,109:0,1:0,0
5	138064460	.	A	G	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||116|CTNNA1|protein_coding|CODING|ENST00000517980|3|1),INTRON(MODIFIER||||122|CTNNA1|protein_coding|CODING|ENST00000522227|2|1),INTRON(MODIFIER||||93|CTNNA1|protein_coding|CODING|ENST00000524127|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	45:1:0:0:43,45:0,0:1,1:0,0	109:2:0:0:100,109:0,0:7,7:0,0
5	138064466	.	G	A	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=GG->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER||||116|CTNNA1|protein_coding|CODING|ENST00000517980|3|1),INTRON(MODIFIER||||122|CTNNA1|protein_coding|CODING|ENST00000522227|2|1),INTRON(MODIFIER||||93|CTNNA1|protein_coding|CODING|ENST00000524127|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	45:1:0:0:0,1:0,0:44,45:0,0	105:2:0:0:6,15:0,0:97,97:0,0
5	138112859	.	C	T	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||100|CTNNA1|protein_coding|CODING|ENST00000520339|2|1),INTRON(MODIFIER||||116|CTNNA1|protein_coding|CODING|ENST00000517980|3|1),INTRON(MODIFIER||||122|CTNNA1|protein_coding|CODING|ENST00000522227|2|1),INTRON(MODIFIER||||138|CTNNA1|protein_coding|CODING|ENST00000519113|1|1),INTRON(MODIFIER||||155|CTNNA1|protein_coding|CODING|ENST00000523912|1|1),INTRON(MODIFIER||||160|CTNNA1|protein_coding|CODING|ENST00000518910|1|1),INTRON(MODIFIER||||181|CTNNA1|protein_coding|CODING|ENST00000518245|1|1),INTRON(MODIFIER||||214|CTNNA1|protein_coding|CODING|ENST00000520158|1|1),INTRON(MODIFIER||||803|CTNNA1|protein_coding|CODING|ENST00000355078|1|1),INTRON(MODIFIER||||906|CTNNA1|protein_coding|CODING|ENST00000302763|1|1),INTRON(MODIFIER||||93|CTNNA1|protein_coding|CODING|ENST00000524127|2|1),INTRON(MODIFIER|||||CTNNA1|nonsense_mediated_decay|CODING|ENST00000519309|1|1),INTRON(MODIFIER|||||CTNNA1|nonsense_mediated_decay|CODING|ENST00000521724|1|1),UPSTREAM(MODIFIER||||841|CTNNA1|protein_coding|CODING|ENST00000518825||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	57:5:0:0:0,1:52,69:0,0:0,0	141:5:0:0:0,0:127,155:0,1:9,15
5	139033402	.	C	T	.	PASS	NT=ref;QSS=23;QSS_NT=23;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||101|CXXC5|protein_coding|CODING|ENST00000504944|1|1),INTRON(MODIFIER||||10|CXXC5|protein_coding|CODING|ENST00000507139|1|1),INTRON(MODIFIER||||136|CXXC5|protein_coding|CODING|ENST00000520967|1|1),INTRON(MODIFIER||||160|CXXC5|protein_coding|CODING|ENST00000504844|1|1),INTRON(MODIFIER||||322|CXXC5|protein_coding|CODING|ENST00000302517|1|1),INTRON(MODIFIER||||322|CXXC5|protein_coding|CODING|ENST00000511048|1|1),INTRON(MODIFIER||||67|CXXC5|protein_coding|CODING|ENST00000502295|1|1),INTRON(MODIFIER||||72|CXXC5|protein_coding|CODING|ENST00000512816|1|1),INTRON(MODIFIER||||79|CXXC5|protein_coding|CODING|ENST00000502336|1|1),UPSTREAM(MODIFIER|||||CTD-3224K15.2|lincRNA|NON_CODING|ENST00000514287||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	44:1:0:0:0,0:43,44:0,0:0,0	90:0:0:0:0,0:78,79:0,0:12,12
5	142366747	.	T	C	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||759|ARHGAP26|protein_coding|CODING|ENST00000378004|11|1),INTRON(MODIFIER||||814|ARHGAP26|protein_coding|CODING|ENST00000274498|11|1),INTRON(MODIFIER||||90|ARHGAP26|protein_coding|CODING|ENST00000451259|4|1),INTRON(MODIFIER|||||ARHGAP26|processed_transcript|CODING|ENST00000469396|3|1),INTRON(MODIFIER|||||ARHGAP26|retained_intron|CODING|ENST00000469131|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	48:1:0:0:0,0:0,0:0,0:47,49	102:0:0:0:0,0:7,10:0,0:95,97
5	142562865	.	A	G	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||759|ARHGAP26|protein_coding|CODING|ENST00000378004|20|1),INTRON(MODIFIER||||814|ARHGAP26|protein_coding|CODING|ENST00000274498|20|1),INTRON(MODIFIER|||||ARHGAP26|nonsense_mediated_decay|CODING|ENST00000419676|3|1),INTRON(MODIFIER|||||ARHGAP26|nonsense_mediated_decay|CODING|ENST00000424007|5|1),INTRON(MODIFIER|||||ARHGAP26|processed_transcript|CODING|ENST00000486650|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:0:0:0:35,35:0,0:0,0:0,0	86:0:0:0:81,81:0,0:5,5:0,0
5	144371063	.	T	C	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:0:0:0:0,0:0,0:0,0:34,34	96:0:0:0:0,0:6,6:1,1:89,89
5	145139399	.	G	A	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||148|PRELID2|protein_coding|CODING|ENST00000394450||1),DOWNSTREAM(MODIFIER||||177|PRELID2|protein_coding|CODING|ENST00000505416||1),INTRON(MODIFIER|||||PRELID2|processed_transcript|CODING|ENST00000510259|1|1),INTRON(MODIFIER|||||PRELID2|processed_transcript|CODING|ENST00000510594|2|1),UTR_3_PRIME(MODIFIER||||177|PRELID2|protein_coding|CODING|ENST00000358004|7|1),UTR_3_PRIME(MODIFIER||||189|PRELID2|protein_coding|CODING|ENST00000334744|8|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	41:0:0:0:0,0:0,0:41,41:0,0	109:2:0:0:6,6:0,0:101,103:0,0
5	145547489	.	T	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||LARS|processed_transcript|CODING|ENST00000503654||1),DOWNSTREAM(MODIFIER|||||LARS|retained_intron|CODING|ENST00000506436||1),INTRON(MODIFIER||||1122|LARS|protein_coding|CODING|ENST00000510191|4|1),INTRON(MODIFIER||||1130|LARS|protein_coding|CODING|ENST00000545646|4|1),INTRON(MODIFIER||||1149|LARS|protein_coding|CODING|ENST00000274562|4|1),INTRON(MODIFIER||||1176|LARS|protein_coding|CODING|ENST00000394434|5|1),INTRON(MODIFIER|||||LARS|processed_transcript|CODING|ENST00000505223|4|1),INTRON(MODIFIER|||||LARS|processed_transcript|CODING|ENST00000511505|4|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:0:0:0:0,0:0,0:0,0:40,40	115:2:0:0:0,0:11,13:1,1:101,107
5	146240621	.	T	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||432|PPP2R2B|protein_coding|CODING|ENST00000394410|2|1),INTRON(MODIFIER||||432|PPP2R2B|protein_coding|CODING|ENST00000508545|1|1),INTRON(MODIFIER||||443|PPP2R2B|protein_coding|CODING|ENST00000356826|2|1),INTRON(MODIFIER||||443|PPP2R2B|protein_coding|CODING|ENST00000394411|2|1),INTRON(MODIFIER||||443|PPP2R2B|protein_coding|CODING|ENST00000394413|1|1),INTRON(MODIFIER||||443|PPP2R2B|protein_coding|CODING|ENST00000453001|2|1),INTRON(MODIFIER||||446|PPP2R2B|protein_coding|CODING|ENST00000336640|1|1),INTRON(MODIFIER||||449|PPP2R2B|protein_coding|CODING|ENST00000504198|2|1),INTRON(MODIFIER||||501|PPP2R2B|protein_coding|CODING|ENST00000394409|2|1),INTRON(MODIFIER||||509|PPP2R2B|protein_coding|CODING|ENST00000394414|2|1),INTRON(MODIFIER||||57|PPP2R2B|protein_coding|CODING|ENST00000508267|4|1),INTRON(MODIFIER|||||PPP2R2B|nonsense_mediated_decay|CODING|ENST00000504565|3|1),INTRON(MODIFIER|||||PPP2R2B|nonsense_mediated_decay|CODING|ENST00000512011|2|1),INTRON(MODIFIER|||||PPP2R2B|nonsense_mediated_decay|CODING|ENST00000512639|1|1),INTRON(MODIFIER|||||PPP2R2B|nonsense_mediated_decay|CODING|ENST00000515880|2|1),INTRON(MODIFIER|||||PPP2R2B|nonsense_mediated_decay|CODING|ENST00000522831|1|1),INTRON(MODIFIER|||||PPP2R2B|nonsense_mediated_decay|CODING|ENST00000528601|2|1),INTRON(MODIFIER|||||PPP2R2B|nonsense_mediated_decay|CODING|ENST00000532154|2|1),INTRON(MODIFIER|||||PPP2R2B|processed_transcript|CODING|ENST00000502876|2|1),INTRON(MODIFIER|||||PPP2R2B|processed_transcript|CODING|ENST00000509721|3|1),INTRON(MODIFIER|||||PPP2R2B|processed_transcript|CODING|ENST00000520231|1|1),INTRON(MODIFIER|||||PPP2R2B|processed_transcript|CODING|ENST00000530902|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:1:0:0:0,0:0,0:0,0:29,30	93:2:0:0:0,0:9,9:0,0:82,86
5	146985625	.	C	T	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=CC->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER||||778|JAKMIP2|protein_coding|CODING|ENST00000333010|19|1),INTRON(MODIFIER||||799|JAKMIP2|protein_coding|CODING|ENST00000507386|19|1),INTRON(MODIFIER||||810|JAKMIP2|protein_coding|CODING|ENST00000265272|20|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	46:0:0:0:0,0:46,46:0,0:0,0	112:4:0:0:0,0:103,107:0,0:5,5
5	147136032	.	A	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||778|JAKMIP2|protein_coding|CODING|ENST00000333010|1|1),INTRON(MODIFIER||||799|JAKMIP2|protein_coding|CODING|ENST00000507386|1|1),INTRON(MODIFIER||||810|JAKMIP2|protein_coding|CODING|ENST00000265272|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:1:0:0:30,31:0,0:0,0:0,0	106:1:0:0:100,101:0,0:5,5:0,0
5	147629195	.	G	A	.	PASS	NT=ref;QSS=25;QSS_NT=25;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	46:0:0:0:0,0:0,0:46,46:0,0	104:1:0:0:14,14:0,0:88,89:1,1
5	147763148	.	A	C	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=EXON(MODIFIER|||||RP11-373N22.3|processed_transcript|NON_CODING|ENST00000501695|1|1),UPSTREAM(MODIFIER||||1113|FBXO38|protein_coding|CODING|ENST00000394370||1),UPSTREAM(MODIFIER||||1188|FBXO38|protein_coding|CODING|ENST00000340253||1),UPSTREAM(MODIFIER||||943|FBXO38|protein_coding|CODING|ENST00000296701||1),UPSTREAM(MODIFIER|||||FBXO38|processed_transcript|CODING|ENST00000503613||1),UPSTREAM(MODIFIER|||||FBXO38|processed_transcript|CODING|ENST00000504971||1),UPSTREAM(MODIFIER|||||FBXO38|processed_transcript|CODING|ENST00000511080||1),UPSTREAM(MODIFIER|||||FBXO38|retained_intron|CODING|ENST00000508326||1),UPSTREAM(MODIFIER|||||FBXO38|retained_intron|CODING|ENST00000509411||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:1:0:0:34,35:0,0:0,0:0,0	85:1:0:0:76,77:8,8:0,0:0,0
5	149035054	.	C	T	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=CC->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	53:6:1:0:0,0:47,123:0,1:0,6	138:26:0:0:0,2:105,295:0,0:7,13
5	152175836	.	G	C	.	PASS	NT=ref;QSS=24;QSS_NT=24;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||AC091969.1|lincRNA|NON_CODING|ENST00000503048|2|1),INTRON(MODIFIER|||||AC091969.1|lincRNA|NON_CODING|ENST00000522300|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	48:0:0:0:0,0:0,0:48,48:0,0	104:1:0:0:0,0:9,9:94,97:0,0
5	152449375	.	G	A	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||AC091969.1|lincRNA|NON_CODING|ENST00000503048|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	41:0:0:0:0,0:0,0:41,41:0,0	112:0:0:0:10,10:0,0:102,102:0,0
5	153296428	rs2560072	A	G	.	PASS	NT=ref;QSS=23;QSS_NT=23;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=153296428;GMAF=0.3141;dbSNPBuildID=100;SSR=0;SAO=0;VP=05010000000507011e000100;WGT=1;VC=SNV;SLO;ASP;VLD;G5A;G5;GNO;KGPhase1;KGPilot123;KGPROD;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	46:0:0:0:46,46:0,0:0,0:0,0	103:1:0:0:93,94:0,0:9,9:0,0
5	153296434	.	A	G	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	46:0:0:0:45,45:0,0:1,1:0,0	107:1:0:0:98,99:0,0:8,8:0,0
5	154924427	.	C	G	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	43:0:0:0:0,0:43,43:0,0:0,0	99:2:0:0:0,0:93,95:4,4:0,0
5	156087444	.	C	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||256|SGCD|protein_coding|CODING|ENST00000447401|7|1),INTRON(MODIFIER||||256|SGCD|protein_coding|CODING|ENST00000517913|9|1),INTRON(MODIFIER||||289|SGCD|protein_coding|CODING|ENST00000435422|6|1),INTRON(MODIFIER||||290|SGCD|protein_coding|CODING|ENST00000337851|7|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	75:2:0:0:0,0:72,80:0,1:1,1	169:1:0:0:0,0:158,171:0,0:10,12
5	156112990	.	G	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||256|SGCD|protein_coding|CODING|ENST00000447401|7|1),INTRON(MODIFIER||||256|SGCD|protein_coding|CODING|ENST00000517913|9|1),INTRON(MODIFIER||||289|SGCD|protein_coding|CODING|ENST00000435422|6|1),INTRON(MODIFIER||||290|SGCD|protein_coding|CODING|ENST00000337851|7|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	45:0:0:0:1,1:0,0:44,44:0,0	92:1:0:0:6,6:0,0:85,86:0,0
5	157913439	.	G	A	.	PASS	NT=ref;QSS=25;QSS_NT=25;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-32D16.1|lincRNA|NON_CODING|ENST00000519609|1|1),INTRON(MODIFIER|||||RP11-32D16.1|lincRNA|NON_CODING|ENST00000522704|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	50:0:0:0:0,0:0,0:50,50:0,0	106:0:0:0:10,10:0,0:95,95:1,1
5	158327632	.	A	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||523|EBF1|protein_coding|CODING|ENST00000517373|6|1),INTRON(MODIFIER||||560|EBF1|protein_coding|CODING|ENST00000380654|5|1),INTRON(MODIFIER||||591|EBF1|protein_coding|CODING|ENST00000313708|6|1),INTRON(MODIFIER|||||EBF1|processed_transcript|CODING|ENST00000518836|7|1),INTRON(MODIFIER|||||EBF1|processed_transcript|CODING|ENST00000523464|1|1),INTRON(MODIFIER|||||EBF1|retained_intron|CODING|ENST00000519739|4|1),INTRON(MODIFIER|||||EBF1|retained_intron|CODING|ENST00000519890|2|1),INTRON(MODIFIER|||||EBF1|retained_intron|CODING|ENST00000522192|4|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:1:0:0:35,36:0,0:0,0:0,0	107:3:0:0:96,98:0,0:0,1:8,8
5	158885494	.	A	G	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=EXON(MODIFIER|||||AC008703.1|lincRNA|NON_CODING|ENST00000518418|4|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	42:0:0:0:42,42:0,0:0,0:0,0	95:0:0:0:90,90:0,0:5,5:0,0
5	159039046	.	C	G	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:0:0:0:0,0:37,37:0,0:0,0	103:0:0:0:0,0:97,97:6,6:0,0
5	159292037	.	A	G	.	PASS	NT=ref;QSS=26;QSS_NT=26;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||AC011343.1|lincRNA|NON_CODING|ENST00000522627|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	52:0:0:0:52,52:0,0:0,0:0,0	104:1:0:0:92,92:0,0:11,12:0,0
5	159931673	.	A	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:3:0:0:26,31:0,0:1,1:0,0	98:17:0:0:62,69:1,1:16,25:2,3
5	161965031	.	A	G	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:0:0:0:36,36:0,0:0,0:0,0	112:2:0:0:104,106:1,1:5,5:0,0
5	164918212	rs112382679	G	A	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||CTC-535M15.2|processed_transcript|NON_CODING|ENST00000522189|1|1);RSPOS=164918212;dbSNPBuildID=132;SSR=0;SAO=0;VP=050100000001000102000100;WGT=1;VC=SNV;SLO;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:0:0:0:0,0:0,0:34,34:0,0	93:0:0:0:5,5:0,0:88,88:0,0
5	165565477	rs6891644	T	A	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-67M9.1|lincRNA|NON_CODING|ENST00000520075|2|1);RSPOS=165565477;GMAF=0.1758;dbSNPBuildID=116;SSR=0;SAO=0;VP=050000000005070117000100;WGT=1;VC=SNV;ASP;VLD;G5A;G5;GNO;KGPhase1;KGPROD;OTHERKG;PH3	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:1:0:0:0,0:0,0:0,0:35,36	98:1:0:0:9,9:0,0:0,0:88,89
5	166613447	.	C	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:0:0:0:0,0:31,31:0,0:0,0	101:0:0:0:0,0:95,95:0,0:6,6
5	166936523	.	C	T	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||2773|ODZ2|protein_coding|CODING|ENST00000545108|2|1),INTRON(MODIFIER||||2774|ODZ2|protein_coding|CODING|ENST00000518659|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:0:0:0:0,0:36,36:0,0:0,0	122:2:0:0:0,0:106,108:0,0:14,14
5	167036541	.	T	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||2773|ODZ2|protein_coding|CODING|ENST00000545108|2|1),INTRON(MODIFIER||||2774|ODZ2|protein_coding|CODING|ENST00000518659|2|1),INTRON(MODIFIER|||||ODZ2|processed_transcript|CODING|ENST00000520393|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:1:0:0:0,0:0,0:0,0:31,33	80:3:0:0:0,0:5,5:0,0:72,75
5	167045301	.	C	T	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||2773|ODZ2|protein_coding|CODING|ENST00000545108|2|1),INTRON(MODIFIER||||2774|ODZ2|protein_coding|CODING|ENST00000518659|2|1),INTRON(MODIFIER|||||ODZ2|processed_transcript|CODING|ENST00000520393|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:1:0:0:0,0:36,37:0,0:0,0	90:1:0:0:0,0:79,80:0,0:10,10
5	168545677	.	G	A	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||SLIT3|processed_transcript|CODING|ENST00000521130||1),INTRON(MODIFIER||||1472|SLIT3|protein_coding|CODING|ENST00000404867|4|1),INTRON(MODIFIER||||1523|SLIT3|protein_coding|CODING|ENST00000519560|4|1),INTRON(MODIFIER||||1530|SLIT3|protein_coding|CODING|ENST00000332966|4|1),INTRON(MODIFIER|||||SLIT3|retained_intron|CODING|ENST00000518140|4|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:1:0:0:0,0:0,0:35,36:0,0	94:1:0:0:6,6:0,1:87,88:0,0
5	169751490	.	T	G	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	41:0:0:0:0,0:0,0:0,0:41,41	99:1:0:0:0,0:0,0:7,8:91,92
5	170226142	.	C	T	.	PASS	NT=ref;QSS=23;QSS_NT=23;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||170|GABRP|protein_coding|CODING|ENST00000521481||1),DOWNSTREAM(MODIFIER||||58|GABRP|protein_coding|CODING|ENST00000519196||1),DOWNSTREAM(MODIFIER||||91|GABRP|protein_coding|CODING|ENST00000521009||1),DOWNSTREAM(MODIFIER|||||GABRP|retained_intron|CODING|ENST00000519137||1),INTRON(MODIFIER||||188|GABRP|protein_coding|CODING|ENST00000522868|6|1),INTRON(MODIFIER||||289|GABRP|protein_coding|CODING|ENST00000519385|6|1),INTRON(MODIFIER||||349|GABRP|protein_coding|CODING|ENST00000519598|6|1),INTRON(MODIFIER||||440|GABRP|protein_coding|CODING|ENST00000265294|6|1),INTRON(MODIFIER||||440|GABRP|protein_coding|CODING|ENST00000518525|7|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	46:0:0:0:0,0:46,46:0,0:0,0	108:1:0:0:0,0:99,100:0,0:8,8
5	170236537	.	C	T	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||188|GABRP|protein_coding|CODING|ENST00000522868||1),INTRON(MODIFIER||||289|GABRP|protein_coding|CODING|ENST00000519385|8|1),INTRON(MODIFIER||||349|GABRP|protein_coding|CODING|ENST00000519598|8|1),INTRON(MODIFIER||||440|GABRP|protein_coding|CODING|ENST00000265294|8|1),INTRON(MODIFIER||||440|GABRP|protein_coding|CODING|ENST00000518525|9|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:0:0:0:0,0:37,37:0,0:0,0	93:0:0:0:0,0:84,85:1,1:8,8
5	171305600	.	G	C	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||508|FBXW11|protein_coding|CODING|ENST00000393802|5|1),INTRON(MODIFIER||||510|FBXW11|protein_coding|CODING|ENST00000425623|6|1),INTRON(MODIFIER||||529|FBXW11|protein_coding|CODING|ENST00000296933|6|1),INTRON(MODIFIER||||542|FBXW11|protein_coding|CODING|ENST00000265094|6|1),INTRON(MODIFIER|||||FBXW11|nonsense_mediated_decay|CODING|ENST00000523843|7|1),INTRON(MODIFIER|||||FBXW11|processed_transcript|CODING|ENST00000522891|4|1),UPSTREAM(MODIFIER|||||FBXW11|processed_transcript|CODING|ENST00000522376||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	26:7:0:0:0,0:0,0:19,26:0,0	80:17:0:0:0,0:12,14:51,66:0,0
5	173541891	rs187753280	G	A	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||99|HMP19|protein_coding|CODING|ENST00000521585|3|1);RSPOS=173541891;GMAF=0.0046;dbSNPBuildID=135;SSR=0;SAO=0;VP=050000000005000014000100;WGT=1;VC=SNV;ASP;KGPhase1;KGPROD	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:0:0:0:0,0:0,0:37,37:0,0	87:0:0:0:8,8:1,1:78,79:0,0
5	173545056	.	T	C	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||99|HMP19|protein_coding|CODING|ENST00000521585|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	52:9:1:0:0,0:0,4:1,1:42,93	125:14:1:0:0,0:11,24:0,1:100,226
5	173656839	.	C	T	.	PASS	NT=ref;QSS=23;QSS_NT=23;SGT=CC->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER||||99|HMP19|protein_coding|CODING|ENST00000521585|4|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	50:0:0:0:0,0:50,50:0,0:0,0	82:1:0:0:0,0:77,79:0,0:4,4
5	174518901	.	G	A	.	PASS	NT=ref;QSS=29;QSS_NT=29;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	49:0:0:0:0,0:0,0:49,49:0,0	92:1:0:0:14,14:0,0:77,78:0,0
5	174792076	.	C	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:0:0:0:0,0:33,33:0,0:0,0	97:1:0:0:0,0:88,89:0,0:8,8
5	175004018	.	G	A	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	47:0:0:0:0,0:0,0:47,47:0,0	118:2:0:0:6,6:0,0:110,112:0,0
5	175004026	.	C	G	.	PASS	NT=ref;QSS=23;QSS_NT=23;SGT=CC->CG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	47:0:0:0:0,0:47,47:0,0:0,0	119:2:0:0:0,0:112,114:5,5:0,0
5	175047781	.	G	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:0:0:0:0,2:0,0:39,39:0,0	126:1:0:0:9,15:0,0:116,116:0,1
5	176228265	.	T	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:2:0:0:0,0:0,0:1,2:35,39	84:12:1:0:0,0:2,2:11,21:59,69
5	176247006	.	A	G	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||842|UNC5A|protein_coding|CODING|ENST00000329542|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	53:0:0:0:52,53:1,1:0,1:0,0	111:1:0:0:103,103:1,2:6,7:0,0
5	176247038	.	C	T	.	PASS	NT=ref;QSS=24;QSS_NT=24;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||842|UNC5A|protein_coding|CODING|ENST00000329542|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	49:1:0:0:1,1:47,50:0,0:0,0	106:2:0:0:0,0:96,97:1,1:7,9
5	176559506	.	G	A	.	PASS	NT=ref;QSS=31;QSS_NT=31;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER||||123|NSD1|protein_coding|CODING|ENST00000510954||1),UPSTREAM(MODIFIER||||154|NSD1|protein_coding|CODING|ENST00000508896||1),UPSTREAM(MODIFIER||||2427|NSD1|protein_coding|CODING|ENST00000347982||1),UPSTREAM(MODIFIER||||2427|NSD1|protein_coding|CODING|ENST00000354179||1),UPSTREAM(MODIFIER||||2593|NSD1|protein_coding|CODING|ENST00000361032||1),UPSTREAM(MODIFIER||||2696|NSD1|protein_coding|CODING|ENST00000439151||1),UPSTREAM(MODIFIER||||67|NSD1|protein_coding|CODING|ENST00000511258||1),UPSTREAM(MODIFIER|||||NSD1|retained_intron|CODING|ENST00000512992||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	65:2:0:0:0,0:0,0:63,65:0,0	100:0:0:0:6,6:1,1:93,93:0,0
5	177983460	.	A	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AC;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER||||309|COL23A1|protein_coding|CODING|ENST00000407622|2|1),INTRON(MODIFIER||||540|COL23A1|protein_coding|CODING|ENST00000390654|2|1),INTRON(MODIFIER|||||COL23A1|processed_transcript|CODING|ENST00000484750|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:0:0:0:38,38:0,0:0,0:0,0	77:1:0:0:71,72:5,5:0,0:0,0
5	178064089	.	C	T	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:1:0:0:0,0:38,39:0,0:0,0	107:4:0:0:0,0:89,94:0,0:14,15
5	178133986	.	C	G	.	PASS	NT=ref;QSS=26;QSS_NT=26;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||605|ZNF354A|protein_coding|CODING|ENST00000335815||1),INTRON(MODIFIER|||||RP11-281O15.3|processed_transcript|NON_CODING|ENST00000367003|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	49:0:0:0:0,0:49,50:0,0:0,0	104:2:0:0:0,0:88,88:14,15:0,0
5	178250995	.	T	G	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-281O15.3|processed_transcript|NON_CODING|ENST00000367003|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:0:0:0:0,0:0,0:0,0:36,37	84:1:0:0:0,0:0,0:6,7:77,79
5	178562142	.	G	A	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1211|ADAMTS2|protein_coding|CODING|ENST00000251582|13|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	55:6:1:0:0,0:0,2:49,63:0,0	91:6:1:0:6,9:0,0:79,113:0,0
5	178705195	rs365864	A	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1211|ADAMTS2|protein_coding|CODING|ENST00000251582|2|1),INTRON(MODIFIER||||566|ADAMTS2|protein_coding|CODING|ENST00000274609|2|1);RSPOS=178705195;RV;dbSNPBuildID=80;SSR=0;SAO=0;VP=050000080001000002000100;GENEINFO=ADAMTS2:9509;WGT=1;VC=SNV;INT;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:1:0:0:29,33:0,1:0,0:0,0	48:3:0:0:41,48:0,2:4,4:0,0
5	179561861	rs4700876	T	C	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||315|RASGEF1C|protein_coding|CODING|ENST00000522500|1|1),INTRON(MODIFIER||||466|RASGEF1C|protein_coding|CODING|ENST00000361132|4|1),INTRON(MODIFIER||||466|RASGEF1C|protein_coding|CODING|ENST00000393371|3|1),INTRON(MODIFIER|||||RASGEF1C|nonsense_mediated_decay|CODING|ENST00000520209|1|1),INTRON(MODIFIER|||||RASGEF1C|processed_transcript|CODING|ENST00000519883|1|1);RSPOS=179561861;dbSNPBuildID=111;SSR=0;SAO=0;VP=050000080005000502000100;GENEINFO=RASGEF1C:255426;WGT=1;VC=SNV;INT;ASP;HD;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	22:0:0:0:0,0:0,0:0,0:22,41	46:2:0:0:0,0:8,9:0,0:36,82
5	179695770	.	C	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||102|MAPK9|protein_coding|CODING|ENST00000523583|4|1),INTRON(MODIFIER||||124|MAPK9|protein_coding|CODING|ENST00000397072|3|1),INTRON(MODIFIER||||214|MAPK9|protein_coding|CODING|ENST00000539014|2|1),INTRON(MODIFIER||||242|MAPK9|protein_coding|CODING|ENST00000425491|3|1),INTRON(MODIFIER||||339|MAPK9|protein_coding|CODING|ENST00000347470|3|1),INTRON(MODIFIER||||382|MAPK9|protein_coding|CODING|ENST00000343111|3|1),INTRON(MODIFIER||||382|MAPK9|protein_coding|CODING|ENST00000393360|3|1),INTRON(MODIFIER||||424|MAPK9|protein_coding|CODING|ENST00000452135|3|1),INTRON(MODIFIER||||424|MAPK9|protein_coding|CODING|ENST00000455781|3|1),INTRON(MODIFIER|||||MAPK9|nonsense_mediated_decay|CODING|ENST00000393362|4|1),UPSTREAM(MODIFIER|||||MAPK9|processed_transcript|CODING|ENST00000523135||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:1:0:0:0,0:35,37:0,0:0,0	92:5:0:0:5,5:81,86:1,1:0,0
5	180062619	.	G	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1298|FLT4|protein_coding|CODING|ENST00000393347|1|1),INTRON(MODIFIER||||1306|FLT4|protein_coding|CODING|ENST00000502649|1|1),INTRON(MODIFIER||||1363|FLT4|protein_coding|CODING|ENST00000261937|1|1),INTRON(MODIFIER|||||FLT4|processed_transcript|CODING|ENST00000424276|1|1),INTRON(MODIFIER|||||FLT4|processed_transcript|CODING|ENST00000502293|1|1),INTRON(MODIFIER|||||FLT4|processed_transcript|CODING|ENST00000513527|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	55:12:0:0:0,0:0,0:42,120:1,1	182:36:0:0:7,17:0,0:139,328:0,1
5	180733258	.	C	T	.	PASS	NT=ref;QSS=23;QSS_NT=23;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||U6|snRNA|NON_CODING|ENST00000410601||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	45:0:0:0:0,0:45,47:0,0:0,0	109:4:0:0:0,0:94,99:0,0:11,13
5	180733263	rs201967498	A	G	.	PASS	NT=ref;QSS=24;QSS_NT=24;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||U6|snRNA|NON_CODING|ENST00000410601||1),INTERGENIC(MODIFIER||||||||||1);RSPOS=180733263;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	49:0:0:0:49,51:0,0:0,0:0,0	119:2:0:0:105,108:0,0:12,14:0,0
6	469036	.	C	G	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=CC->CG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	48:2:4:0:0,0:46,69:0,2:0,0	115:5:6:0:0,0:97,153:13,26:0,0
6	1222228	.	G	A	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:0:0:0:0,0:0,0:35,35:0,0	112:0:0:0:7,7:0,0:105,106:0,0
6	3090998	.	A	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||625|RIPK1|protein_coding|CODING|ENST00000541791|5|1),INTRON(MODIFIER||||671|RIPK1|protein_coding|CODING|ENST00000259808|7|1),INTRON(MODIFIER||||671|RIPK1|protein_coding|CODING|ENST00000380409|6|1),INTRON(MODIFIER|||||RIPK1|processed_transcript|CODING|ENST00000479389|6|1),INTRON(MODIFIER|||||RIPK1|processed_transcript|CODING|ENST00000490396|2|1),UPSTREAM(MODIFIER|||||RNA5SP201|rRNA|NON_CODING|ENST00000410316||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:0:0:0:31,32:2,2:0,0:0,0	90:0:0:0:83,85:1,1:6,7:0,0
6	3181832	.	C	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||RP1-40E16.9|lincRNA|NON_CODING|ENST00000425384||1),DOWNSTREAM(MODIFIER|||||RP1-40E16.9|lincRNA|NON_CODING|ENST00000435043||1),INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||RP1-40E16.8|unprocessed_pseudogene|NON_CODING|ENST00000404155||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:1:0:0:0,0:30,33:0,0:0,0	123:1:0:0:0,0:112,114:0,1:10,10
6	3691901	.	C	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:0:0:0:0,0:39,39:0,0:0,0	105:1:0:0:5,5:99,101:0,0:0,0
6	4332213	.	C	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	28:1:0:0:0,0:27,32:0,0:0,0	57:0:0:0:0,0:52,71:0,0:5,7
6	6108980	.	C	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:0:0:0:0,0:28,28:0,0:1,1	106:1:0:0:6,6:98,99:0,0:1,1
6	8323271	.	T	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:0:0:0:0,0:0,0:0,0:35,35	89:3:0:0:0,0:5,7:0,1:81,83
6	8597450	rs9392228	T	A	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=8597450;dbSNPBuildID=119;SSR=0;SAO=0;VP=050000080005000002000100;GENEINFO=LOC100506207:100506207;WGT=1;VC=SNV;INT;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:1:0:0:0,0:0,0:0,0:37,40	103:4:0:0:7,7:0,0:0,0:92,100
6	9560357	.	G	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	45:1:0:0:0,0:0,0:44,46:0,0	105:0:0:0:4,4:0,0:101,101:0,0
6	9631508	.	A	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||OFCC1|processed_transcript|CODING|ENST00000492094|16|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:0:0:0:33,33:0,0:1,1:0,0	95:1:0:0:86,87:0,0:0,0:8,8
6	9701571	.	C	G	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||OFCC1|nonsense_mediated_decay|CODING|ENST00000487015||1),INTRON(MODIFIER||||479|OFCC1|protein_coding|CODING|ENST00000460363|9|1),INTRON(MODIFIER|||||OFCC1|processed_transcript|CODING|ENST00000492094|14|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:0:0:0:0,0:37,37:0,0:0,0	109:0:0:0:0,0:99,99:10,10:0,0
6	9920577	.	A	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||207|OFCC1|protein_coding|CODING|ENST00000491508|4|1),INTRON(MODIFIER||||276|OFCC1|protein_coding|CODING|ENST00000316020|4|1),INTRON(MODIFIER||||479|OFCC1|protein_coding|CODING|ENST00000460363|3|1),INTRON(MODIFIER|||||OFCC1|nonsense_mediated_decay|CODING|ENST00000469426|2|1),INTRON(MODIFIER|||||OFCC1|nonsense_mediated_decay|CODING|ENST00000487015|2|1),INTRON(MODIFIER|||||OFCC1|processed_transcript|CODING|ENST00000460066|3|1),INTRON(MODIFIER|||||OFCC1|processed_transcript|CODING|ENST00000466385|4|1),INTRON(MODIFIER|||||OFCC1|processed_transcript|CODING|ENST00000472329|4|1),INTRON(MODIFIER|||||OFCC1|processed_transcript|CODING|ENST00000489590|1|1),INTRON(MODIFIER|||||OFCC1|processed_transcript|CODING|ENST00000492094|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	49:0:0:0:49,50:0,0:0,0:0,0	102:1:0:0:96,97:5,7:0,0:0,0
6	12308162	.	C	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:1:0:0:0,0:29,30:0,0:0,0	104:1:0:0:0,1:94,94:0,0:9,9
6	13960889	rs3885772	T	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||12|RNF182|protein_coding|CODING|ENST00000471906|1|1),INTRON(MODIFIER||||161|RNF182|protein_coding|CODING|ENST00000420478|1|1),INTRON(MODIFIER||||247|RNF182|protein_coding|CODING|ENST00000488300|1|1),INTRON(MODIFIER||||247|RNF182|protein_coding|CODING|ENST00000537388|1|1),INTRON(MODIFIER||||247|RNF182|protein_coding|CODING|ENST00000537663|1|1),INTRON(MODIFIER||||247|RNF182|protein_coding|CODING|ENST00000544682|1|1),INTRON(MODIFIER||||50|RNF182|protein_coding|CODING|ENST00000488763|1|1),INTRON(MODIFIER||||81|RNF182|protein_coding|CODING|ENST00000423553|1|1);RSPOS=13960889;dbSNPBuildID=108;SSR=0;SAO=0;VP=050100080005000102000100;GENEINFO=RNF182:221687;WGT=1;VC=SNV;SLO;INT;ASP;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:2:0:0:0,0:0,0:0,1:32,33	113:4:1:0:7,7:0,0:3,4:99,102
6	15415611	.	T	A	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1074|JARID2|protein_coding|CODING|ENST00000397311|3|1),INTRON(MODIFIER||||1246|JARID2|protein_coding|CODING|ENST00000341776|3|1),INTRON(MODIFIER||||960|JARID2|protein_coding|CODING|ENST00000541660|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	57:5:0:0:1,1:0,1:1,1:50,57	127:6:0:0:8,9:2,3:2,3:109,116
6	16327568	.	T	C	.	PASS	NT=ref;QSS=24;QSS_NT=24;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|aAc/aGc|N325S|815|ATXN1|protein_coding|CODING|ENST00000244769|8|1),NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|aAc/aGc|N325S|815|ATXN1|protein_coding|CODING|ENST00000436367|7|1),NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|aAc/aGc|N325S|815|ATXN1|protein_coding|CODING|ENST00000450222|8|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	48:1:0:0:0,0:0,0:0,0:47,48	90:5:0:0:0,0:9,10:0,0:76,80
6	18666898	.	T	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:3:0:0:0,0:0,2:0,0:27,28	98:6:0:0:6,8:0,0:0,0:86,90
6	19271074	rs142973039	C	T	.	PASS	NT=ref;QSS=23;QSS_NT=23;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=19271074;GMAF=0.0128;dbSNPBuildID=134;SSR=0;SAO=0;VP=050000000005000014000100;WGT=1;VC=SNV;ASP;KGPhase1;KGPROD	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	45:0:0:0:0,0:45,46:0,0:0,0	87:1:0:0:0,0:79,80:0,0:7,7
6	19348252	.	C	G	.	PASS	NT=ref;QSS=23;QSS_NT=23;SGT=CC->CG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||RP11-686D16.2|processed_pseudogene|NON_CODING|ENST00000403848||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	46:0:0:0:0,0:46,46:0,0:0,0	114:1:0:0:0,0:100,102:13,13:0,0
6	19506598	.	T	G	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:0:0:0:1,1:0,0:0,0:33,33	98:1:0:0:0,0:0,0:12,12:85,86
6	19556162	.	C	T	.	PASS	NT=ref;QSS=24;QSS_NT=24;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP1-167F1.2|processed_transcript|NON_CODING|ENST00000432171|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	49:1:0:0:1,1:47,49:0,0:0,0	105:0:0:0:0,0:93,94:0,0:12,12
6	20049090	.	C	T	.	PASS	NT=ref;QSS=30;QSS_NT=30;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	49:0:0:0:0,0:49,49:0,0:0,0	110:2:0:0:0,0:91,92:0,0:17,18
6	21306825	.	A	G	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:0:0:0:34,34:0,0:0,0:0,0	100:0:0:0:90,91:0,0:10,10:0,0
6	21636396	.	T	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->AT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:0:0:0:0,0:0,0:0,0:33,33	105:1:0:0:4,4:0,1:0,0:100,101
6	22659349	.	C	A	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:0:0:0:0,0:39,39:0,0:0,0	105:1:0:0:9,9:95,98:0,0:0,0
6	22837029	.	T	G	.	PASS	NT=ref;QSS=23;QSS_NT=23;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	28:1:0:0:0,0:1,2:0,0:26,33	62:7:1:0:0,0:2,3:11,16:42,50
6	23556265	rs72833831	T	C	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=TT->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=23556265;dbSNPBuildID=131;SSR=16;SAO=0;VP=050000000005040102000100;WGT=1;VC=SNV;ASP;VLD;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	41:0:0:0:0,0:0,0:0,0:41,41	85:3:0:0:0,0:4,4:0,0:78,81
6	24934833	.	T	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1047|FAM65B|protein_coding|CODING|ENST00000538035|1|1),INTRON(MODIFIER||||647|FAM65B|protein_coding|CODING|ENST00000510784|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:0:0:0:0,0:0,0:0,0:31,31	104:1:0:0:0,0:11,11:0,0:92,93
6	25586316	.	A	G	.	PASS	NT=ref;QSS=27;QSS_NT=27;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1371|LRRC16A|protein_coding|CODING|ENST00000329474|31|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	59:0:0:0:59,60:0,0:0,0:0,0	123:2:0:0:108,111:1,1:12,13:0,0
6	26254536	.	T	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=TT->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=DOWNSTREAM(MODIFIER||||126|HIST1H2BH|protein_coding|CODING|ENST00000356350||1),INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER||||136|HIST1H3F|protein_coding|CODING|ENST00000446824||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	50:0:0:0:0,0:0,0:0,0:50,54	92:1:0:0:0,0:5,5:0,0:86,91
6	27523753	.	C	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||XXbac-BPG34I8.3|processed_pseudogene|NON_CODING|ENST00000405625||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	45:0:0:0:0,0:44,44:0,0:1,1	82:0:0:0:0,0:75,75:0,0:7,7
6	28792222	rs9257236	G	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=28792222;dbSNPBuildID=118;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:0:0:0:0,0:0,0:31,31:0,0	81:1:0:0:1,1:0,0:70,71:9,9
6	29469242	.	C	T	.	PASS	NT=ref;QSS=24;QSS_NT=24;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||XXbac-BPG13B8.10|lincRNA|NON_CODING|ENST00000436804|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	46:0:0:0:0,0:46,46:0,0:0,0	79:0:0:0:0,0:71,71:0,0:8,8
6	29736413	.	G	A	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=GG->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	45:1:0:0:0,1:0,0:44,46:0,0	127:3:0:0:9,13:0,0:115,120:0,0
6	29736415	.	C	A	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=CC->AC;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	44:1:0:0:0,1:43,45:0,0:0,0	126:2:0:0:9,13:115,119:0,0:0,0
6	29777332	.	G	A	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||MICG|unprocessed_pseudogene|NON_CODING|ENST00000416822||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:1:0:0:0,0:0,0:38,40:0,0	117:3:0:0:16,19:0,0:98,101:0,0
6	29777574	.	G	A	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||MICG|unprocessed_pseudogene|NON_CODING|ENST00000416822||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:1:0:0:0,0:0,1:35,35:0,0	99:2:0:0:7,8:0,0:90,93:0,0
6	29777575	.	G	A	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||MICG|unprocessed_pseudogene|NON_CODING|ENST00000416822||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:1:0:0:0,0:0,0:35,36:0,0	99:3:0:0:6,8:0,0:90,93:0,0
6	29780394	.	G	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=EXON(MODIFIER|||||MICG|unprocessed_pseudogene|NON_CODING|ENST00000416822|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	53:0:0:0:0,2:0,0:53,53:0,0	103:0:0:0:8,12:0,0:95,95:0,0
6	29780398	.	T	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=TT->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=EXON(MODIFIER|||||MICG|unprocessed_pseudogene|NON_CODING|ENST00000416822|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	53:0:0:0:0,0:0,2:0,0:53,53	101:0:0:0:0,0:9,13:0,0:92,92
6	30416406	rs7382633	A	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=30416406;dbSNPBuildID=116;SSR=1;SAO=0;VP=050000000005000402000140;WGT=1;VC=SNV;ASP;HD;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	45:0:0:0:45,45:0,0:0,0:0,0	111:1:0:0:103,105:0,0:7,7:0,0
6	30503977	.	C	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:0:0:0:0,0:29,29:0,0:0,0	103:1:0:0:8,8:93,94:1,1:0,0
6	30673177	rs138062977	A	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=AA->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=DOWNSTREAM(MODIFIER|||||MDC1|retained_intron|CODING|ENST00000492462||1),INTRON(MODIFIER|||||MDC1-AS1|antisense|NON_CODING|ENST00000442150|1|1),SYNONYMOUS_CODING(LOW|SILENT|acT/acC|T1261|2089|MDC1|protein_coding|CODING|ENST00000376406|10|1),SYNONYMOUS_CODING(LOW|SILENT|acT/acC|T997|1825|MDC1|protein_coding|CODING|ENST00000376405|9|1),UPSTREAM(MODIFIER|||||MDC1|retained_intron|CODING|ENST00000489540||1);RSPOS=30673177;dbSNPBuildID=134;SSR=0;SAO=0;VP=050000000305040002000100;GENEINFO=MDC1:9656;WGT=1;VC=SNV;REF;SYN;ASP;VLD;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:3:0:0:28,28:0,0:0,2:0,1	103:10:0:0:81,85:0,0:12,20:0,0
6	31899806	.	C	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||138|C2|protein_coding|CODING|ENST00000413154||1),INTRON(MODIFIER||||1115|XXbac-BPG116M5.17|protein_coding|CODING|ENST00000477310|3|1),INTRON(MODIFIER||||1266|CFB|protein_coding|CODING|ENST00000556679|2|1),INTRON(MODIFIER||||1266|XXbac-BPG116M5.17|protein_coding|CODING|ENST00000456570|2|1),INTRON(MODIFIER||||157|C2|protein_coding|CODING|ENST00000452202|1|1),INTRON(MODIFIER||||202|C2|protein_coding|CODING|ENST00000447952|2|1),INTRON(MODIFIER||||328|C2|protein_coding|CODING|ENST00000418949|3|1),INTRON(MODIFIER||||462|C2|protein_coding|CODING|ENST00000497706|1|1),INTRON(MODIFIER||||506|C2|protein_coding|CODING|ENST00000469372|1|1),INTRON(MODIFIER||||538|C2|protein_coding|CODING|ENST00000452323|1|1),INTRON(MODIFIER||||620|C2|protein_coding|CODING|ENST00000442278|1|1),INTRON(MODIFIER||||752|C2|protein_coding|CODING|ENST00000299367|3|1),INTRON(MODIFIER|||||C2|nonsense_mediated_decay|CODING|ENST00000411571|1|1),INTRON(MODIFIER|||||C2|nonsense_mediated_decay|CODING|ENST00000482060|3|1),INTRON(MODIFIER|||||C2|nonsense_mediated_decay|CODING|ENST00000484636|1|1),UPSTREAM(MODIFIER||||135|C2|protein_coding|CODING|ENST00000494905||1),UPSTREAM(MODIFIER|||||C2|retained_intron|CODING|ENST00000486124||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	44:9:0:0:0,0:35,46:0,0:0,0	81:10:0:0:0,0:65,78:0,0:6,9
6	32441797	.	A	C	.	PASS	NT=ref;QSS=29;QSS_NT=29;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||HLA-DRB9|unprocessed_pseudogene|NON_CODING|ENST00000449413||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	65:5:0:0:60,83:0,1:0,0:0,0	168:14:0:0:147,213:7,10:0,0:0,0
6	32441807	.	T	C	.	PASS	NT=ref;QSS=30;QSS_NT=30;SGT=TT->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||HLA-DRB9|unprocessed_pseudogene|NON_CODING|ENST00000449413||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	68:2:0:0:0,0:0,1:0,0:66,91	173:3:0:0:0,0:7,9:0,0:163,223
6	32441837	.	G	A	.	PASS	NT=ref;QSS=27;QSS_NT=27;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||HLA-DRB9|unprocessed_pseudogene|NON_CODING|ENST00000449413||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	60:7:0:0:0,2:0,0:53,96:0,0	194:18:0:0:8,9:0,0:168,261:0,0
6	32442304	.	G	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||HLA-DRB9|unprocessed_pseudogene|NON_CODING|ENST00000449413||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:0:0:0:0,0:0,0:39,39:0,0	100:1:0:0:0,0:5,7:92,93:2,2
6	32556594	rs28724211	A	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||266|HLA-DRB1|protein_coding|CODING|ENST00000360004|1|1);RSPOS=32556594;GMAF=0.2092;dbSNPBuildID=125;SSR=0;SAO=0;VP=050000080001000016000100;GENEINFO=HLA-DRB1:3123;WGT=1;VC=SNV;INT;KGPhase1;KGPROD;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:0:0:0:34,38:0,0:0,0:0,0	110:4:0:0:101,114:0,0:5,9:0,0
6	33027458	rs9277216	T	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=DOWNSTREAM(MODIFIER||||260|HLA-DPA1|protein_coding|CODING|ENST00000419277||1),INTERGENIC(MODIFIER||||||||||1);RSPOS=33027458;dbSNPBuildID=118;SSR=0;SAO=0;VP=050000000001000002000100;WGT=1;VC=SNV;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	19:0:0:0:0,0:0,0:0,0:19,19	46:1:0:0:0,1:8,8:1,1:36,38
6	34661482	.	T	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||snoU13|snoRNA|NON_CODING|ENST00000459226||1),INTRON(MODIFIER||||232|C6orf106|protein_coding|CODING|ENST00000374026|1|1),INTRON(MODIFIER||||298|C6orf106|protein_coding|CODING|ENST00000374023|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	51:2:0:0:0,0:1,1:0,0:48,50	90:11:0:0:0,0:9,9:0,1:70,81
6	35798138	.	C	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=DOWNSTREAM(MODIFIER||||547|SRPK1|protein_coding|CODING|ENST00000373822||1),DOWNSTREAM(MODIFIER||||639|SRPK1|protein_coding|CODING|ENST00000423325||1),DOWNSTREAM(MODIFIER||||655|SRPK1|protein_coding|CODING|ENST00000373825||1),DOWNSTREAM(MODIFIER||||671|SRPK1|protein_coding|CODING|ENST00000361690||1),DOWNSTREAM(MODIFIER|||||SRPK1|retained_intron|CODING|ENST00000346162||1),INTRON(MODIFIER|||||LHFPL5|processed_transcript|CODING|ENST00000496656|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	43:0:0:0:0,0:43,44:0,0:0,0	96:1:0:0:0,0:91,93:0,0:4,4
6	37521773	.	C	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||MIR4462|miRNA|NON_CODING|ENST00000579627||1),DOWNSTREAM(MODIFIER|||||RP1-153P14.5|lincRNA|NON_CODING|ENST00000414875||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:5:0:0:0,0:27,32:0,0:0,0	77:8:0:0:8,9:61,67:0,1:0,0
6	39583397	.	G	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||U1|snRNA|NON_CODING|ENST00000517181||1),INTRON(MODIFIER||||653|KIF6|protein_coding|CODING|ENST00000373213|1|1),INTRON(MODIFIER||||758|KIF6|protein_coding|CODING|ENST00000538893|5|1),INTRON(MODIFIER||||797|KIF6|protein_coding|CODING|ENST00000373215|5|1),INTRON(MODIFIER||||797|KIF6|protein_coding|CODING|ENST00000373216|5|1),INTRON(MODIFIER||||814|KIF6|protein_coding|CODING|ENST00000287152|5|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:0:0:0:0,0:0,0:31,32:0,0	91:1:0:0:5,5:0,0:85,88:0,0
6	40686095	.	A	G	.	PASS	NT=ref;QSS=25;QSS_NT=25;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||RP11-570K4.1|lincRNA|NON_CODING|ENST00000438818||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	50:0:0:0:50,50:0,0:0,0:0,0	97:0:0:0:91,91:0,0:6,7:0,0
6	41871171	.	A	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||123|MED20|protein_coding|CODING|ENST00000409312||1),DOWNSTREAM(MODIFIER||||139|MED20|protein_coding|CODING|ENST00000394251||1),DOWNSTREAM(MODIFIER||||212|MED20|protein_coding|CODING|ENST00000265350||1),DOWNSTREAM(MODIFIER|||||MED20|processed_transcript|CODING|ENST00000467535||1),DOWNSTREAM(MODIFIER|||||MED20|processed_transcript|CODING|ENST00000482361||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:0:0:0:29,29:0,0:0,0:0,0	85:2:0:0:74,80:1,1:8,8:0,0
6	41871185	.	A	G	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||123|MED20|protein_coding|CODING|ENST00000409312||1),DOWNSTREAM(MODIFIER||||139|MED20|protein_coding|CODING|ENST00000394251||1),DOWNSTREAM(MODIFIER||||212|MED20|protein_coding|CODING|ENST00000265350||1),DOWNSTREAM(MODIFIER|||||MED20|processed_transcript|CODING|ENST00000467535||1),DOWNSTREAM(MODIFIER|||||MED20|processed_transcript|CODING|ENST00000482361||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:0:0:0:31,31:0,0:0,0:0,0	97:2:0:0:86,91:0,0:9,11:0,0
6	42950750	.	C	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER||||496|PPP2R5D|protein_coding|CODING|ENST00000461010||1),UPSTREAM(MODIFIER||||570|PPP2R5D|protein_coding|CODING|ENST00000394110||1),UPSTREAM(MODIFIER||||594|PPP2R5D|protein_coding|CODING|ENST00000472118||1),UPSTREAM(MODIFIER||||602|PPP2R5D|protein_coding|CODING|ENST00000485511||1),UPSTREAM(MODIFIER||||738|PEX6|protein_coding|CODING|ENST00000244546||1),UPSTREAM(MODIFIER||||980|PEX6|protein_coding|CODING|ENST00000304611||1),UPSTREAM(MODIFIER|||||PPP2R5D|nonsense_mediated_decay|CODING|ENST00000230402||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:2:0:0:0,0:33,38:0,0:0,0	71:1:0:0:0,0:64,64:1,2:5,5
6	43556472	.	A	G	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||70|POLH|protein_coding|CODING|ENST00000443535||1),EXON(MODIFIER|||||RP3-337H4.8|antisense|NON_CODING|ENST00000417591|2|1),INTRON(MODIFIER||||414|POLH|protein_coding|CODING|ENST00000372226|4|1),INTRON(MODIFIER||||651|POLH|protein_coding|CODING|ENST00000535400|3|1),INTRON(MODIFIER||||713|POLH|protein_coding|CODING|ENST00000372236|4|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	51:0:0:0:51,51:0,0:0,0:0,0	136:2:0:0:125,127:1,1:8,9:0,0
6	44442041	rs144325174	A	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=44442041;GMAF=0.1062;dbSNPBuildID=134;SSR=0;SAO=0;VP=050000000005000016000100;WGT=1;VC=SNV;ASP;KGPhase1;KGPROD;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:0:20:0:39,40:0,0:1,1:0,0	68:10:30:0:49,54:0,2:9,15:0,0
6	44862667	.	A	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||108|SUPT3H|protein_coding|CODING|ENST00000371458|4|1),INTRON(MODIFIER||||317|SUPT3H|protein_coding|CODING|ENST00000306867|9|1),INTRON(MODIFIER||||317|SUPT3H|protein_coding|CODING|ENST00000371459|10|1),INTRON(MODIFIER||||328|SUPT3H|protein_coding|CODING|ENST00000371460|12|1),INTRON(MODIFIER||||328|SUPT3H|protein_coding|CODING|ENST00000371461|10|1),INTRON(MODIFIER|||||SUPT3H|nonsense_mediated_decay|CODING|ENST00000475057|10|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:1:0:0:30,31:0,0:0,0:0,0	97:1:0:0:85,87:11,11:0,0:0,0
6	46345681	.	G	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER||||243|RCAN2|protein_coding|CODING|ENST00000306764|2|1),INTRON(MODIFIER||||243|RCAN2|protein_coding|CODING|ENST00000371374|2|1),INTRON(MODIFIER||||243|RCAN2|protein_coding|CODING|ENST00000405162|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:0:0:0:0,0:0,0:31,31:0,0	101:2:0:0:13,13:0,0:86,88:0,0
6	46560274	.	A	G	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||469|CYP39A1|protein_coding|CODING|ENST00000275016|8|1),INTRON(MODIFIER|||||CYP39A1|processed_transcript|CODING|ENST00000480804|4|1),INTRON(MODIFIER|||||RP3-347E1.2|antisense|NON_CODING|ENST00000418138|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	43:0:0:0:43,43:0,0:0,0:0,0	110:0:0:0:103,103:0,0:7,7:0,0
6	46969720	.	A	C	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||713|GPR110|protein_coding|CODING|ENST00000283297|7|1),INTRON(MODIFIER||||910|GPR110|protein_coding|CODING|ENST00000371253|13|1),INTRON(MODIFIER|||||GPR110|processed_transcript|CODING|ENST00000449332|11|1),INTRON(MODIFIER|||||GPR110|retained_intron|CODING|ENST00000419892|11|1),UPSTREAM(MODIFIER|||||GPR110|retained_intron|CODING|ENST00000477858||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	42:0:0:0:42,42:0,0:0,0:0,0	108:4:0:0:98,102:6,6:0,0:0,0
6	48332746	.	G	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	19:0:0:0:0,1:0,0:19,28:0,0	70:0:0:0:14,23:0,0:56,93:0,0
6	48376595	rs7769498	C	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=48376595;GMAF=0.321;dbSNPBuildID=116;SSR=0;SAO=0;VP=05010000000507011e000100;WGT=1;VC=SNV;SLO;ASP;VLD;G5A;G5;GNO;KGPhase1;KGPilot123;KGPROD;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	45:0:0:0:0,0:45,45:0,0:0,0	94:1:0:0:4,4:89,89:0,1:0,0
6	48480638	.	G	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:0:0:0:0,0:0,0:29,29:0,0	123:0:0:0:0,0:0,0:112,112:11,11
6	49798071	.	A	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||178|CRISP1|protein_coding|CODING|ENST00000329411||1),DOWNSTREAM(MODIFIER||||178|CRISP1|protein_coding|CODING|ENST00000507853||1),DOWNSTREAM(MODIFIER||||178|CRISP1|protein_coding|CODING|ENST00000536021||1),DOWNSTREAM(MODIFIER||||249|CRISP1|protein_coding|CODING|ENST00000335847||1),DOWNSTREAM(MODIFIER||||249|CRISP1|protein_coding|CODING|ENST00000355791||1),DOWNSTREAM(MODIFIER||||249|CRISP1|protein_coding|CODING|ENST00000505118||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:2:0:0:30,33:0,0:0,0:0,0	91:1:0:0:83,85:0,0:7,7:0,0
6	50074864	.	A	C	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:0:0:0:35,35:0,0:0,0:0,0	101:0:0:0:90,90:11,11:0,0:0,0
6	50531410	.	T	G	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:0:0:0:0,0:0,0:0,0:35,35	112:0:0:0:1,1:0,0:10,10:101,101
6	51003653	.	G	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->GT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	42:0:0:0:0,0:0,0:42,65:0,2	128:0:0:0:0,0:1,1:114,145:13,20
6	51145113	rs2465026	A	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=51145113;GMAF=0.0614;dbSNPBuildID=100;SSR=0;SAO=0;VP=050000000001040016000100;WGT=1;VC=SNV;VLD;KGPhase1;KGPROD;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:0:0:0:38,38:0,0:0,0:0,0	106:0:0:0:95,95:11,12:0,0:0,0
6	51438189	.	A	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	47:0:0:0:46,47:1,1:0,0:0,0	121:0:0:0:115,116:6,6:0,0:0,0
6	55098101	.	C	G	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||444|HCRTR2|protein_coding|CODING|ENST00000370862|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	42:0:0:0:0,0:42,42:0,0:0,0	111:0:0:0:0,0:104,104:7,7:0,0
6	56802880	.	T	C	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||688|DST|protein_coding|CODING|ENST00000449297|2|1),INTRON(MODIFIER||||7750|DST|protein_coding|CODING|ENST00000370754|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:0:0:0:0,0:0,0:0,0:35,36	95:1:0:0:0,0:6,6:0,0:88,89
6	57321494	.	C	T	.	PASS	NT=ref;QSS=23;QSS_NT=23;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||PRIM2|processed_transcript|NON_CODING|ENST00000389488|7|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	47:2:0:0:0,0:45,50:0,0:0,0	112:0:0:0:0,0:101,107:0,0:11,16
6	57369529	.	A	G	.	PASS	NT=ref;QSS=25;QSS_NT=25;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||PRIM2|processed_transcript|NON_CODING|ENST00000389488|7|1),UPSTREAM(MODIFIER|||||PRIM2|processed_transcript|NON_CODING|ENST00000470638||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	94:1:0:0:93,100:0,0:0,0:0,0	317:2:0:0:304,315:1,1:10,13:0,0
6	57481714	rs75000556	G	A	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||PRIM2|processed_transcript|NON_CODING|ENST00000389488|12|1);RSPOS=57481714;dbSNPBuildID=131;SSR=0;SAO=0;VP=050100080005040102000100;GENEINFO=PRIM2:5558;WGT=1;VC=SNV;SLO;INT;ASP;VLD;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	44:1:0:0:0,0:0,0:43,46:0,0	102:1:0:0:5,5:0,1:96,100:0,0
6	57529899	.	T	C	.	PASS	NT=ref;QSS=32;QSS_NT=32;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	67:1:0:0:0,0:0,1:0,0:66,99	209:4:0:0:0,0:13,19:1,1:191,268
6	57982657	.	G	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	42:1:0:0:1,2:1,1:39,39:0,0	85:3:0:0:0,0:0,1:78,79:4,5
6	58167905	rs2636542	C	A	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=58167905;RV;dbSNPBuildID=100;SSR=1;SAO=0;VP=050100000005000102000140;WGT=1;VC=SNV;SLO;ASP;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:0:0:0:0,0:36,37:0,0:0,0	93:1:0:0:6,8:86,87:0,0:0,0
6	58596865	rs112497407	G	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=58596865;dbSNPBuildID=132;SSR=0;SAO=0;VP=050100000005000102000100;WGT=1;VC=SNV;SLO;ASP;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:1:0:0:0,0:0,0:34,35:0,0	98:1:0:0:0,0:0,0:91,91:6,9
6	58596873	rs74491554	C	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=58596873;dbSNPBuildID=131;SSR=0;SAO=0;VP=050100000005040102000100;WGT=1;VC=SNV;SLO;ASP;VLD;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:1:0:0:0,0:32,33:0,0:0,0	100:2:0:0:1,1:90,91:1,1:6,8
6	62063927	rs74782851	T	G	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=62063927;dbSNPBuildID=131;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:0:0:0:0,0:0,0:0,0:36,36	90:0:0:0:0,0:0,0:13,15:77,77
6	63284722	.	T	G	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:1:0:0:0,0:0,0:0,0:33,34	84:2:0:0:0,0:0,0:7,7:75,77
6	64375387	.	G	T	.	PASS	NT=ref;QSS=24;QSS_NT=24;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1071|PHF3|protein_coding|CODING|ENST00000506783|1|1),INTRON(MODIFIER||||2039|PHF3|protein_coding|CODING|ENST00000262043|2|1),INTRON(MODIFIER||||2039|PHF3|protein_coding|CODING|ENST00000393387|1|1),INTRON(MODIFIER||||736|PHF3|protein_coding|CODING|ENST00000509330|2|1),INTRON(MODIFIER||||812|PHF3|protein_coding|CODING|ENST00000481385|1|1),INTRON(MODIFIER||||820|PHF3|protein_coding|CODING|ENST00000494284|2|1),INTRON(MODIFIER||||859|PHF3|protein_coding|CODING|ENST00000515594|1|1),INTRON(MODIFIER|||||PHF3|nonsense_mediated_decay|CODING|ENST00000509876|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	48:0:0:0:0,0:0,0:48,48:0,0	100:1:0:0:0,0:0,0:89,91:10,10
6	65289722	.	C	A	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||3144|EYS|protein_coding|CODING|ENST00000503581|26|1),INTRON(MODIFIER||||3165|EYS|protein_coding|CODING|ENST00000370616|23|1),INTRON(MODIFIER||||3165|EYS|protein_coding|CODING|ENST00000370621|26|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:1:0:0:0,0:36,37:0,0:0,0	122:1:0:0:11,11:110,111:0,0:0,0
6	65854744	.	G	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||3144|EYS|protein_coding|CODING|ENST00000503581|12|1),INTRON(MODIFIER||||3165|EYS|protein_coding|CODING|ENST00000370616|9|1),INTRON(MODIFIER||||3165|EYS|protein_coding|CODING|ENST00000370621|12|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	27:0:0:0:0,0:0,0:27,27:0,0	107:6:0:0:12,12:1,2:88,93:0,0
6	66110315	.	C	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||3144|EYS|protein_coding|CODING|ENST00000503581|7|1),INTRON(MODIFIER||||3165|EYS|protein_coding|CODING|ENST00000370616|4|1),INTRON(MODIFIER||||3165|EYS|protein_coding|CODING|ENST00000370621|7|1),INTRON(MODIFIER||||594|EYS|protein_coding|CODING|ENST00000342421|5|1),INTRON(MODIFIER||||594|EYS|protein_coding|CODING|ENST00000370618|7|1),INTRON(MODIFIER||||619|EYS|protein_coding|CODING|ENST00000393380|7|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:0:0:0:0,0:32,32:0,0:0,0	97:0:0:0:7,7:90,90:0,0:0,0
6	66769812	.	A	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:0:0:0:36,36:0,0:0,0:0,0	101:1:0:0:96,97:0,0:0,0:4,4
6	67310479	.	G	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:0:0:0:0,0:0,0:30,30:0,0	100:1:0:0:0,0:8,8:91,92:0,0
6	67432837	.	G	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:1:0:0:0,0:0,0:34,35:0,0	75:2:0:0:0,0:0,0:69,71:4,4
6	67862165	.	T	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||AL590874.1|miRNA|NON_CODING|ENST00000581695||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:0:0:0:0,0:0,0:0,0:31,31	121:5:0:0:5,9:0,0:0,0:111,119
6	67862182	.	A	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||AL590874.1|miRNA|NON_CODING|ENST00000581695||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	28:1:0:0:27,28:0,0:0,0:0,0	127:4:0:0:115,126:0,0:8,9:0,1
6	67904090	.	G	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:0:0:0:0,0:0,0:33,33:0,0	98:1:0:0:0,0:5,5:92,93:0,0
6	68509112	.	G	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:0:0:0:0,0:0,0:31,31:0,0	112:0:0:0:0,0:9,9:103,103:0,0
6	68680122	.	T	G	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:0:0:0:0,0:0,0:0,0:40,40	103:1:0:0:0,0:0,0:10,10:92,93
6	69303770	.	G	A	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||RP11-361F19.1|processed_pseudogene|NON_CODING|ENST00000406616||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:0:0:0:0,0:0,0:39,39:0,0	100:1:0:0:6,6:0,0:92,93:1,1
6	70540325	.	T	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:0:0:0:0,0:0,0:0,0:31,31	114:3:0:0:0,0:6,6:0,0:105,109
6	71497322	rs199746566	C	T	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||436|SMAP1|protein_coding|CODING|ENST00000370452|4|1),INTRON(MODIFIER||||440|SMAP1|protein_coding|CODING|ENST00000316999|4|1),INTRON(MODIFIER||||467|SMAP1|protein_coding|CODING|ENST00000370455|4|1),INTRON(MODIFIER||||61|SMAP1|protein_coding|CODING|ENST00000445046|1|1);RSPOS=71497322;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000080005000002000100;WGT=1;VC=SNV;INT;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:0:0:0:0,0:37,60:0,0:0,1	130:5:0:0:1,1:117,172:0,0:7,17
6	71975926	.	G	A	.	PASS	NT=ref;QSS=24;QSS_NT=24;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-154D6.1|antisense|NON_CODING|ENST00000412751|3|1),INTRON(MODIFIER|||||RP11-154D6.1|antisense|NON_CODING|ENST00000423255|2|1),INTRON(MODIFIER|||||RP11-154D6.1|antisense|NON_CODING|ENST00000586232|7|1),INTRON(MODIFIER|||||RP11-154D6.1|antisense|NON_CODING|ENST00000591156|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	55:5:0:0:0,0:0,0:50,60:0,0	79:5:0:0:6,6:2,3:66,74:0,0
6	72019984	.	G	T	.	PASS	NT=ref;QSS=25;QSS_NT=25;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||RP11-154D6.1|antisense|NON_CODING|ENST00000590213||1),INTRON(MODIFIER|||||RP11-154D6.1|antisense|NON_CODING|ENST00000412751|2|1),INTRON(MODIFIER|||||RP11-154D6.1|antisense|NON_CODING|ENST00000423255|1|1),INTRON(MODIFIER|||||RP11-154D6.1|antisense|NON_CODING|ENST00000432050|2|1),INTRON(MODIFIER|||||RP11-154D6.1|antisense|NON_CODING|ENST00000434683|3|1),INTRON(MODIFIER|||||RP11-154D6.1|antisense|NON_CODING|ENST00000450998|3|1),INTRON(MODIFIER|||||RP11-154D6.1|antisense|NON_CODING|ENST00000585882|4|1),INTRON(MODIFIER|||||RP11-154D6.1|antisense|NON_CODING|ENST00000585945|4|1),INTRON(MODIFIER|||||RP11-154D6.1|antisense|NON_CODING|ENST00000586030|3|1),INTRON(MODIFIER|||||RP11-154D6.1|antisense|NON_CODING|ENST00000586232|3|1),INTRON(MODIFIER|||||RP11-154D6.1|antisense|NON_CODING|ENST00000586974|4|1),INTRON(MODIFIER|||||RP11-154D6.1|antisense|NON_CODING|ENST00000587015|4|1),INTRON(MODIFIER|||||RP11-154D6.1|antisense|NON_CODING|ENST00000587036|4|1),INTRON(MODIFIER|||||RP11-154D6.1|antisense|NON_CODING|ENST00000587253|3|1),INTRON(MODIFIER|||||RP11-154D6.1|antisense|NON_CODING|ENST00000587397|5|1),INTRON(MODIFIER|||||RP11-154D6.1|antisense|NON_CODING|ENST00000588612|3|1),INTRON(MODIFIER|||||RP11-154D6.1|antisense|NON_CODING|ENST00000589255|4|1),INTRON(MODIFIER|||||RP11-154D6.1|antisense|NON_CODING|ENST00000590780|5|1),INTRON(MODIFIER|||||RP11-154D6.1|antisense|NON_CODING|ENST00000591156|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	50:0:0:0:0,0:0,0:50,50:0,0	100:0:0:0:0,0:0,0:92,93:8,8
6	72264509	.	T	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||RP1-288M22.1|processed_pseudogene|NON_CODING|ENST00000403583||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	28:0:0:0:0,0:0,0:0,0:28,28	92:1:0:0:0,0:0,0:11,11:80,81
6	73744567	rs9360627	T	C	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=TT->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER||||427|KCNQ5|protein_coding|CODING|ENST00000370392|2|1),INTRON(MODIFIER||||68|KCNQ5|protein_coding|CODING|ENST00000443915|1|1),INTRON(MODIFIER||||822|KCNQ5|protein_coding|CODING|ENST00000414165|2|1),INTRON(MODIFIER||||923|KCNQ5|protein_coding|CODING|ENST00000403813|2|1),INTRON(MODIFIER||||932|KCNQ5|protein_coding|CODING|ENST00000355194|3|1),INTRON(MODIFIER||||932|KCNQ5|protein_coding|CODING|ENST00000370398|2|1),INTRON(MODIFIER||||933|KCNQ5|protein_coding|CODING|ENST00000355635|2|1),INTRON(MODIFIER||||942|KCNQ5|protein_coding|CODING|ENST00000402622|2|1),INTRON(MODIFIER||||951|KCNQ5|protein_coding|CODING|ENST00000342056|2|1);RSPOS=73744567;dbSNPBuildID=119;SSR=0;SAO=0;VP=050100080005040102000100;GENEINFO=KCNQ5:56479;WGT=1;VC=SNV;SLO;INT;ASP;VLD;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	26:1:0:0:0,0:0,0:0,0:25,26	45:1:0:0:0,0:9,9:0,0:35,37
6	74122470	.	G	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||195|DDX43|protein_coding|CODING|ENST00000539829||1),DOWNSTREAM(MODIFIER||||447|MB21D1|protein_coding|CODING|ENST00000370318||1),INTRON(MODIFIER||||648|DDX43|protein_coding|CODING|ENST00000370336|11|1),INTRON(MODIFIER|||||DDX43|processed_transcript|CODING|ENST00000479773|5|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	47:1:0:0:0,0:0,0:46,47:0,0	83:1:0:0:0,0:0,0:76,77:6,8
6	74233416	.	A	G	.	PASS	NT=ref;QSS=23;QSS_NT=23;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||RP11-505P4.5|processed_pseudogene|NON_CODING|ENST00000407268||1),EXON(MODIFIER|||||RP11-505P4.7|antisense|NON_CODING|ENST00000431108|1|1),UPSTREAM(MODIFIER||||144|EEF1A1|protein_coding|CODING|ENST00000356303||1),UPSTREAM(MODIFIER||||462|EEF1A1|protein_coding|CODING|ENST00000309268||1),UPSTREAM(MODIFIER||||462|EEF1A1|protein_coding|CODING|ENST00000316292||1),UPSTREAM(MODIFIER||||462|EEF1A1|protein_coding|CODING|ENST00000331523||1),UPSTREAM(MODIFIER|||||EEF1A1|processed_transcript|CODING|ENST00000491404||1),UPSTREAM(MODIFIER|||||EEF1A1|retained_intron|CODING|ENST00000488500||1),UPSTREAM(MODIFIER|||||EEF1A1|retained_intron|CODING|ENST00000490569||1),UPSTREAM(MODIFIER|||||EEF1A1|retained_intron|CODING|ENST00000495333||1),UPSTREAM(MODIFIER|||||RP11-505P4.7|antisense|NON_CODING|ENST00000429386||1),UTR_5_PRIME(MODIFIER||||105|EEF1A1|protein_coding|CODING|ENST00000455918|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	45:0:0:0:45,46:0,0:0,0:0,0	105:0:0:0:98,98:0,0:7,8:0,0
6	74271735	rs79212835	C	T	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-505P4.7|antisense|NON_CODING|ENST00000429386|3|1),INTRON(MODIFIER|||||RP11-505P4.7|antisense|NON_CODING|ENST00000431108|2|1);RSPOS=74271735;dbSNPBuildID=131;SSR=0;SAO=0;VP=050000000001000102000100;WGT=1;VC=SNV;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	45:2:0:0:0,0:43,46:0,0:0,0	103:15:1:0:0,0:77,86:1,1:10,19
6	74738062	.	A	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	41:0:0:0:41,42:0,0:0,0:0,0	102:0:1:0:97,97:0,0:0,0:5,6
6	74936994	.	C	T	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-554D15.1|processed_transcript|NON_CODING|ENST00000435946|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:0:0:0:0,0:37,37:0,0:0,0	86:3:0:0:0,0:76,79:1,1:6,6
6	75360752	.	C	T	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-554D15.1|processed_transcript|NON_CODING|ENST00000435946|2|1),INTRON(MODIFIER|||||RP11-554D15.3|processed_transcript|NON_CODING|ENST00000432484|1|1),INTRON(MODIFIER|||||RP11-554D15.4|lincRNA|NON_CODING|ENST00000421318|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:0:0:0:0,0:36,36:0,0:0,0	101:0:0:0:0,0:93,93:1,1:7,7
6	75756910	.	A	G	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	42:0:0:0:41,41:1,1:0,0:0,0	106:1:0:0:97,97:0,0:8,9:0,0
6	75759196	.	T	G	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=TT->GT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	22:1:0:0:0,1:0,0:0,1:21,22	63:6:0:0:0,0:2,2:11,15:44,49
6	77977894	.	A	G	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:0:0:0:36,36:0,0:0,0:0,0	109:0:0:0:100,101:0,0:9,9:0,0
6	78322873	.	C	T	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:0:0:0:0,0:38,38:0,0:0,0	100:1:0:0:0,0:91,92:0,0:8,8
6	78558748	.	A	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:0:0:0:29,29:0,0:0,0:1,1	94:4:0:0:82,85:1,1:7,8:0,0
6	79184323	.	C	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:0:0:0:0,0:34,35:0,0:0,0	111:0:0:0:0,0:100,100:0,0:11,11
6	80643935	.	C	G	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||314|ELOVL4|protein_coding|CODING|ENST00000369816|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	42:0:0:0:1,1:41,42:0,0:0,0	94:1:0:0:0,1:88,88:5,5:0,0
6	81095949	.	C	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:0:0:0:0,0:37,37:0,0:0,0	97:1:0:0:0,0:88,91:0,0:8,8
6	81095960	.	A	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:0:0:0:38,38:0,0:0,0:0,0	95:1:0:0:85,88:9,9:0,0:0,0
6	81351003	.	T	G	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	22:2:0:0:0,0:0,0:0,0:20,22	50:2:0:0:1,1:0,0:10,12:37,41
6	82059549	.	G	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:0:0:0:0,0:0,0:32,32:0,0	83:5:0:0:0,0:0,0:70,75:8,8
6	82450508	.	T	A	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||442|FAM46A|protein_coding|CODING|ENST00000320172||1),DOWNSTREAM(MODIFIER||||461|FAM46A|protein_coding|CODING|ENST00000369754||1),DOWNSTREAM(MODIFIER||||523|FAM46A|protein_coding|CODING|ENST00000369756||1),INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||RP5-991C6.4|sense_intronic|NON_CODING|ENST00000457116||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:0:0:0:0,0:0,0:0,0:38,41	136:1:0:0:6,7:0,0:0,0:129,135
6	82451082	.	T	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||442|FAM46A|protein_coding|CODING|ENST00000320172||1),DOWNSTREAM(MODIFIER||||461|FAM46A|protein_coding|CODING|ENST00000369754||1),DOWNSTREAM(MODIFIER||||523|FAM46A|protein_coding|CODING|ENST00000369756||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:0:0:0:0,0:0,0:1,1:33,33	131:9:0:0:11,12:0,0:0,0:111,120
6	82584071	.	A	T	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-379B8.1|lincRNA|NON_CODING|ENST00000418567|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:0:0:0:38,38:0,0:0,0:0,0	95:1:0:0:85,86:1,1:0,0:8,8
6	83546972	.	C	A	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:0:0:0:0,0:36,36:0,0:0,0	91:2:0:0:10,10:79,80:0,0:0,1
6	84869284	.	T	A	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=TT->AT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER||||1327|KIAA1009|protein_coding|CODING|ENST00000257766|21|1),INTRON(MODIFIER||||1403|KIAA1009|protein_coding|CODING|ENST00000403245|21|1),INTRON(MODIFIER|||||KIAA1009|processed_transcript|CODING|ENST00000461137|12|1),UPSTREAM(MODIFIER|||||KIAA1009|retained_intron|CODING|ENST00000487999||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	22:1:0:0:0,0:0,0:0,0:21,22	49:1:0:0:10,10:1,1:0,0:37,43
6	85766654	.	C	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:0:0:0:0,0:32,32:0,0:0,0	97:2:0:0:0,0:86,88:0,0:9,9
6	87376502	.	G	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:0:0:0:0,0:0,0:30,30:0,0	86:0:0:0:5,5:0,0:81,90:0,0
6	88038784	.	C	T	.	PASS	NT=ref;QSS=23;QSS_NT=23;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||223|GJB7|protein_coding|CODING|ENST00000525899|1|1),INTRON(MODIFIER||||97|C6orf162|protein_coding|CODING|ENST00000229570|1|1),INTRON(MODIFIER||||97|C6orf162|protein_coding|CODING|ENST00000392863|1|1),INTRON(MODIFIER|||||GJB7|processed_transcript|CODING|ENST00000442973|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	45:0:0:0:0,0:45,45:0,0:0,0	107:0:0:0:1,1:98,98:0,0:8,8
6	88443921	.	G	A	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:0:0:0:0,0:0,0:38,38:0,0	114:1:0:0:9,9:0,0:103,104:1,1
6	88446642	.	G	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	16:2:0:0:0,0:0,0:14,34:0,0	42:11:0:0:7,10:0,0:24,76:0,0
6	88579090	rs62417771	G	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=88579090;dbSNPBuildID=129;SSR=16;SAO=0;VP=050000000001040102000100;WGT=1;VC=SNV;VLD;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	43:0:0:0:0,0:0,0:43,43:0,0	85:0:0:0:0,0:4,4:81,81:0,0
6	89103907	.	A	G	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-459O1.2|lincRNA|NON_CODING|ENST00000429137|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:1:0:0:37,38:0,0:0,0:0,0	101:1:0:0:94,95:0,0:6,6:0,0
6	90059643	.	C	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||318|UBE2J1|protein_coding|CODING|ENST00000435041|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:0:0:0:0,0:34,34:0,0:0,0	114:0:0:0:0,0:107,107:0,0:7,7
6	90281367	.	G	A	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||101|ANKRD6|protein_coding|CODING|ENST00000523798|2|1),INTRON(MODIFIER||||117|ANKRD6|protein_coding|CODING|ENST00000522705|2|1),INTRON(MODIFIER||||174|ANKRD6|protein_coding|CODING|ENST00000465722|3|1),INTRON(MODIFIER||||229|ANKRD6|protein_coding|CODING|ENST00000518150|1|1),INTRON(MODIFIER||||307|ANKRD6|protein_coding|CODING|ENST00000485637|2|1),INTRON(MODIFIER||||53|ANKRD6|protein_coding|CODING|ENST00000522779|2|1),INTRON(MODIFIER||||663|ANKRD6|protein_coding|CODING|ENST00000520793|1|1),INTRON(MODIFIER||||692|ANKRD6|protein_coding|CODING|ENST00000369408|2|1),INTRON(MODIFIER||||722|ANKRD6|protein_coding|CODING|ENST00000447838|2|1),INTRON(MODIFIER||||727|ANKRD6|protein_coding|CODING|ENST00000339746|2|1),INTRON(MODIFIER||||727|ANKRD6|protein_coding|CODING|ENST00000522441|2|1),INTRON(MODIFIER||||79|ANKRD6|protein_coding|CODING|ENST00000520458|2|1),INTRON(MODIFIER|||||ANKRD6|processed_transcript|CODING|ENST00000520886|1|1),INTRON(MODIFIER|||||LYRM2|processed_transcript|CODING|ENST00000520897|5|1),UPSTREAM(MODIFIER|||||RP11-16C18.3|antisense|NON_CODING|ENST00000425588||1),UPSTREAM(MODIFIER|||||RP11-16C18.3|antisense|NON_CODING|ENST00000438267||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:0:0:0:0,0:0,0:35,35:0,0	109:4:0:0:5,6:0,0:99,102:1,1
6	92477153	.	C	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:1:0:0:0,0:28,29:0,0:0,0	113:1:0:0:5,6:107,107:0,0:0,0
6	92706276	.	C	T	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:0:0:0:0,0:40,40:0,0:0,0	98:2:0:0:1,2:90,91:0,0:5,5
6	92819738	.	T	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:1:0:0:0,0:0,0:0,1:33,33	100:1:0:0:0,0:5,5:0,0:94,95
6	93779358	.	G	C	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||RP1-23E21.2|lincRNA|NON_CODING|ENST00000452624||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:2:0:0:1,1:0,0:36,38:0,0	131:1:0:0:0,0:11,12:119,119:0,0
6	93981311	.	C	A	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||998|EPHA7|protein_coding|CODING|ENST00000369303|6|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:0:0:0:0,0:35,35:0,0:0,0	115:0:0:0:9,9:106,106:0,0:0,0
6	94044889	.	C	T	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||998|EPHA7|protein_coding|CODING|ENST00000369303|5|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:0:0:0:0,0:40,40:0,0:0,0	96:1:0:0:0,0:89,90:0,0:6,6
6	94346131	.	A	G	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:1:0:0:35,54:0,0:0,0:0,0	79:3:0:0:70,110:0,1:6,9:0,0
6	95456305	.	G	A	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:0:0:0:0,0:0,0:33,33:0,0	101:2:0:0:13,13:0,0:85,87:1,1
6	96229114	.	A	G	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:0:0:0:35,36:0,0:0,0:0,0	108:2:0:0:94,96:0,0:12,12:0,0
6	96522999	.	G	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||359|FUT9|protein_coding|CODING|ENST00000302103|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:1:0:0:0,0:0,0:33,34:0,0	86:3:0:0:0,0:0,0:74,74:9,12
6	98395967	.	G	T	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	45:0:0:0:0,0:1,1:44,44:0,0	97:0:0:0:0,0:0,0:88,88:9,9
6	100066679	.	G	A	.	PASS	NT=ref;QSS=27;QSS_NT=27;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||707|PRDM13|protein_coding|CODING|ENST00000369215||1),DOWNSTREAM(MODIFIER||||717|PRDM13|protein_coding|CODING|ENST00000369214||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	56:1:0:0:0,0:0,0:55,56:0,0	98:0:0:0:7,7:1,1:90,90:0,0
6	100391374	.	A	T	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||340|MCHR2|protein_coding|CODING|ENST00000281806|3|1),INTRON(MODIFIER||||340|MCHR2|protein_coding|CODING|ENST00000369212|3|1),INTRON(MODIFIER||||340|MCHR2|protein_coding|CODING|ENST00000445970|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:0:0:0:37,37:0,0:0,0:0,0	77:1:0:0:68,70:0,0:0,0:8,8
6	100594168	.	G	T	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:0:0:0:0,0:0,0:33,33:0,0	86:1:0:0:0,0:0,0:73,74:12,12
6	102213381	.	G	C	.	PASS	NT=ref;QSS=27;QSS_NT=27;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||179|GRIK2|protein_coding|CODING|ENST00000455610|2|1),INTRON(MODIFIER||||832|GRIK2|protein_coding|CODING|ENST00000369137|6|1),INTRON(MODIFIER||||859|GRIK2|protein_coding|CODING|ENST00000369134|6|1),INTRON(MODIFIER||||869|GRIK2|protein_coding|CODING|ENST00000318991|6|1),INTRON(MODIFIER||||869|GRIK2|protein_coding|CODING|ENST00000413795|6|1),INTRON(MODIFIER||||892|GRIK2|protein_coding|CODING|ENST00000369138|6|1),INTRON(MODIFIER||||908|GRIK2|protein_coding|CODING|ENST00000421544|6|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	53:0:0:0:0,0:0,0:53,53:0,0	121:0:0:0:0,0:12,12:109,109:0,0
6	103015358	.	C	T	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:0:0:0:0,0:36,37:0,0:0,0	97:0:0:0:0,0:90,90:0,0:7,7
6	104812710	.	A	C	.	PASS	NT=ref;QSS=24;QSS_NT=24;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	47:0:0:0:47,48:0,0:0,0:0,0	114:2:0:0:104,105:8,9:0,0:0,0
6	104826243	.	C	T	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:0:0:0:0,0:39,39:0,0:0,0	100:2:0:0:0,0:91,93:0,0:7,7
6	108754550	.	T	C	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||481|LACE1|protein_coding|CODING|ENST00000368977|7|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	47:0:0:0:0,0:0,0:0,0:47,48	111:3:0:0:0,0:9,11:0,0:99,102
6	108754559	.	T	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||481|LACE1|protein_coding|CODING|ENST00000368977|7|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	47:0:0:0:0,0:1,1:0,0:46,48	106:3:0:0:0,0:8,10:0,0:95,98
6	110789224	.	G	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||173|SLC22A16|protein_coding|CODING|ENST00000424139|1|1),INTRON(MODIFIER||||199|SLC22A16|protein_coding|CODING|ENST00000456137|1|1),INTRON(MODIFIER||||266|SLC22A16|protein_coding|CODING|ENST00000434949|1|1),INTRON(MODIFIER||||350|SLC22A16|protein_coding|CODING|ENST00000437378|1|1),INTRON(MODIFIER||||515|SLC22A16|protein_coding|CODING|ENST00000439654|1|1),INTRON(MODIFIER||||543|SLC22A16|protein_coding|CODING|ENST00000330550|1|1),INTRON(MODIFIER||||577|SLC22A16|protein_coding|CODING|ENST00000368919|1|1),INTRON(MODIFIER|||||SLC22A16|processed_transcript|CODING|ENST00000461487|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:0:0:0:0,0:0,0:34,34:0,0	121:1:0:0:1,1:0,0:111,112:8,8
6	111290858	.	T	C	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||213|GTF3C6|protein_coding|CODING|ENST00000329970||1),DOWNSTREAM(MODIFIER|||||AL357515.1|miRNA|NON_CODING|ENST00000583422||1),DOWNSTREAM(MODIFIER|||||GTF3C6|processed_transcript|CODING|ENST00000480191||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:0:0:0:0,0:0,0:0,0:38,38	112:1:0:0:0,0:10,10:0,0:101,102
6	112810968	.	C	T	.	PASS	NT=ref;QSS=23;QSS_NT=23;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	45:0:0:0:0,0:45,45:0,0:0,0	103:2:0:0:0,0:90,92:1,1:10,10
6	113528625	.	A	C	.	PASS	NT=ref;QSS=23;QSS_NT=23;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	47:1:0:0:46,46:0,0:0,1:0,0	93:0:0:0:87,87:6,6:0,0:0,0
6	114656587	.	A	C	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||346|HS3ST5|protein_coding|CODING|ENST00000312719|1|1),INTRON(MODIFIER|||||RP3-399L15.3|processed_transcript|NON_CODING|ENST00000518470|1|1),INTRON(MODIFIER|||||RP3-399L15.3|processed_transcript|NON_CODING|ENST00000519104|9|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:0:0:0:39,39:0,0:0,0:0,0	98:1:0:0:87,88:10,10:0,0:0,0
6	115075190	.	A	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:0:0:0:32,32:0,0:0,0:0,0	104:1:0:0:95,95:8,8:0,1:0,0
6	115514582	.	G	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:0:0:0:0,0:0,0:32,32:0,0	98:1:0:0:0,0:5,5:92,93:0,0
6	116044284	.	C	A	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:0:0:0:0,0:35,35:0,0:0,0	83:1:0:0:9,9:73,74:0,0:0,0
6	117187082	rs11962737	T	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=117187082;GMAF=0.141;dbSNPBuildID=120;SSR=0;SAO=0;VP=050000000005000016000100;WGT=1;VC=SNV;ASP;KGPhase1;KGPROD;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:3:0:0:0,0:0,0:0,0:33,37	104:5:0:0:0,0:6,7:0,1:93,99
6	120262665	.	C	A	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:0:0:0:0,0:37,37:0,0:0,0	115:1:0:0:13,13:101,102:0,0:0,0
6	120502209	.	T	A	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	41:0:0:0:0,0:0,0:0,0:41,41	97:0:0:0:6,6:0,0:0,0:91,95
6	121329765	.	C	A	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	43:1:0:0:0,0:42,43:0,0:0,0	100:0:0:0:11,11:89,89:0,0:0,0
6	121527623	.	A	G	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1257|C6orf170|protein_coding|CODING|ENST00000398212|21|1),INTRON(MODIFIER||||1298|C6orf170|protein_coding|CODING|ENST00000275159|21|1),INTRON(MODIFIER|||||C6orf170|nonsense_mediated_decay|CODING|ENST00000464622|22|1),INTRON(MODIFIER|||||C6orf170|processed_transcript|CODING|ENST00000398197|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:0:0:0:31,31:0,0:0,0:0,0	120:1:0:0:111,111:0,0:8,9:0,0
6	122879654	.	T	G	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||453|SERINC1|protein_coding|CODING|ENST00000368454|2|1),INTRON(MODIFIER||||78|PKIB|protein_coding|CODING|ENST00000392491|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:0:0:0:0,0:0,0:0,0:32,32	91:0:0:0:0,0:0,0:9,9:82,82
6	123917202	.	C	A	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||167|TRDN|protein_coding|CODING|ENST00000542443|1|1),INTRON(MODIFIER||||297|TRDN|protein_coding|CODING|ENST00000546248|1|1),INTRON(MODIFIER||||721|TRDN|protein_coding|CODING|ENST00000334268|1|1),INTRON(MODIFIER||||729|TRDN|protein_coding|CODING|ENST00000398178|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:0:0:0:0,0:38,38:0,0:0,0	118:1:0:0:5,5:112,113:0,0:0,0
6	124488404	.	T	C	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||139|NKAIN2|protein_coding|CODING|ENST00000546092|1|1),INTRON(MODIFIER||||188|NKAIN2|protein_coding|CODING|ENST00000368416|1|1),INTRON(MODIFIER||||208|NKAIN2|protein_coding|CODING|ENST00000368417|1|1),INTRON(MODIFIER|||||NKAIN2|processed_transcript|CODING|ENST00000476571|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:1:0:0:0,0:0,0:0,0:36,43	96:0:0:0:0,0:6,10:1,1:89,112
6	124885753	.	T	C	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||139|NKAIN2|protein_coding|CODING|ENST00000546092|3|1),INTRON(MODIFIER||||188|NKAIN2|protein_coding|CODING|ENST00000368416|3|1),INTRON(MODIFIER||||191|NKAIN2|protein_coding|CODING|ENST00000545433|3|1),INTRON(MODIFIER||||208|NKAIN2|protein_coding|CODING|ENST00000368417|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	43:0:0:0:0,0:0,0:0,0:43,43	100:2:0:0:0,0:5,5:0,0:93,95
6	124897532	.	C	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||139|NKAIN2|protein_coding|CODING|ENST00000546092|3|1),INTRON(MODIFIER||||188|NKAIN2|protein_coding|CODING|ENST00000368416|3|1),INTRON(MODIFIER||||191|NKAIN2|protein_coding|CODING|ENST00000545433|3|1),INTRON(MODIFIER||||208|NKAIN2|protein_coding|CODING|ENST00000368417|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:1:0:0:0,0:34,36:0,0:0,0	112:1:0:0:0,0:100,101:0,0:11,11
6	126049017	.	G	T	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-624M8.1|processed_transcript|NON_CODING|ENST00000427852|1|1),INTRON(MODIFIER|||||RP11-624M8.1|processed_transcript|NON_CODING|ENST00000432121|1|1),INTRON(MODIFIER|||||RP11-624M8.1|processed_transcript|NON_CODING|ENST00000451660|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	42:1:0:0:0,0:0,0:41,42:0,0	113:1:0:0:0,0:0,0:105,105:7,8
6	126053225	.	T	A	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-624M8.1|processed_transcript|NON_CODING|ENST00000427852|1|1),INTRON(MODIFIER|||||RP11-624M8.1|processed_transcript|NON_CODING|ENST00000432121|1|1),INTRON(MODIFIER|||||RP11-624M8.1|processed_transcript|NON_CODING|ENST00000451660|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:0:0:0:0,0:0,0:0,0:39,39	93:1:0:0:8,8:0,0:0,0:84,85
6	126230238	.	A	C	.	PASS	NT=ref;QSS=24;QSS_NT=24;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||182|NCOA7|protein_coding|CODING|ENST00000433571|1|1),INTRON(MODIFIER||||406|RP11-73O6.4|protein_coding|CODING|ENST00000563385|2|1),INTRON(MODIFIER||||827|NCOA7|protein_coding|CODING|ENST00000229634|9|1),INTRON(MODIFIER||||942|NCOA7|protein_coding|CODING|ENST00000368357|11|1),INTRON(MODIFIER||||942|NCOA7|protein_coding|CODING|ENST00000392477|10|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	48:0:0:0:48,48:0,0:0,0:0,0	124:2:0:0:111,113:11,11:0,0:0,0
6	126937400	.	A	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||406|RP11-73O6.4|protein_coding|CODING|ENST00000563385|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	28:0:0:0:28,28:0,0:0,0:0,0	114:1:0:0:102,102:11,11:0,0:0,0
6	128524168	.	C	A	.	PASS	NT=ref;QSS=27;QSS_NT=27;SGT=CC->AC;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER||||1439|PTPRK|protein_coding|CODING|ENST00000368215|6|1),INTRON(MODIFIER||||1440|PTPRK|protein_coding|CODING|ENST00000368226|6|1),INTRON(MODIFIER||||1446|PTPRK|protein_coding|CODING|ENST00000368213|6|1),INTRON(MODIFIER||||1457|PTPRK|protein_coding|CODING|ENST00000368227|6|1),INTRON(MODIFIER||||1458|PTPRK|protein_coding|CODING|ENST00000368210|6|1),INTRON(MODIFIER||||1462|PTPRK|protein_coding|CODING|ENST00000532331|6|1),INTRON(MODIFIER||||1472|PTPRK|protein_coding|CODING|ENST00000368207|6|1),INTRON(MODIFIER||||406|RP11-73O6.4|protein_coding|CODING|ENST00000563385|2|1),INTRON(MODIFIER|||||PTPRK|nonsense_mediated_decay|CODING|ENST00000531050|4|1),INTRON(MODIFIER|||||PTPRK|processed_transcript|CODING|ENST00000368205|3|1),INTRON(MODIFIER|||||PTPRK|processed_transcript|CODING|ENST00000498284|3|1),INTRON(MODIFIER|||||PTPRK|processed_transcript|CODING|ENST00000524481|6|1),INTRON(MODIFIER|||||PTPRK|processed_transcript|CODING|ENST00000524534|6|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	59:0:0:0:0,0:59,59:0,0:0,0	101:1:0:0:7,7:93,94:0,0:0,0
6	128696586	.	C	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1439|PTPRK|protein_coding|CODING|ENST00000368215|2|1),INTRON(MODIFIER||||1440|PTPRK|protein_coding|CODING|ENST00000368226|2|1),INTRON(MODIFIER||||1446|PTPRK|protein_coding|CODING|ENST00000368213|2|1),INTRON(MODIFIER||||1457|PTPRK|protein_coding|CODING|ENST00000368227|2|1),INTRON(MODIFIER||||1458|PTPRK|protein_coding|CODING|ENST00000368210|2|1),INTRON(MODIFIER||||1462|PTPRK|protein_coding|CODING|ENST00000532331|2|1),INTRON(MODIFIER||||1472|PTPRK|protein_coding|CODING|ENST00000368207|2|1),INTRON(MODIFIER||||248|PTPRK|protein_coding|CODING|ENST00000525459|2|1),INTRON(MODIFIER||||406|RP11-73O6.4|protein_coding|CODING|ENST00000563385|2|1),INTRON(MODIFIER|||||PTPRK|nonsense_mediated_decay|CODING|ENST00000392449|3|1),INTRON(MODIFIER|||||PTPRK|nonsense_mediated_decay|CODING|ENST00000531050|1|1),INTRON(MODIFIER|||||PTPRK|nonsense_mediated_decay|CODING|ENST00000532751|3|1),INTRON(MODIFIER|||||PTPRK|processed_transcript|CODING|ENST00000495748|2|1),INTRON(MODIFIER|||||PTPRK|processed_transcript|CODING|ENST00000524481|2|1),INTRON(MODIFIER|||||PTPRK|processed_transcript|CODING|ENST00000524534|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	42:0:0:0:0,0:42,42:0,0:0,0	94:4:0:0:0,0:86,89:0,0:4,5
6	129606449	.	T	G	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||3122|LAMA2|protein_coding|CODING|ENST00000421865|18|1),INTRON(MODIFIER||||406|RP11-73O6.4|protein_coding|CODING|ENST00000563385|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:0:0:0:0,0:0,0:0,0:34,34	99:0:0:0:0,0:1,1:7,7:91,91
6	131123758	.	C	T	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	41:3:0:0:0,0:38,48:0,0:0,1	101:9:0:0:0,1:85,98:0,0:7,7
6	132707144	.	C	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->AC;SOMATIC;TQSS=2;TQSS_NT=2;EFF=DOWNSTREAM(MODIFIER||||115|MOXD1|protein_coding|CODING|ENST00000392401||1),INTRON(MODIFIER||||613|MOXD1|protein_coding|CODING|ENST00000367963|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	47:0:0:0:0,2:47,48:0,0:0,0	87:1:0:0:6,6:80,81:0,0:0,0
6	133270773	.	G	A	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:0:0:0:0,0:0,0:38,38:0,0	86:1:0:0:7,7:0,0:77,78:1,1
6	133360497	.	C	T	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:1:0:0:0,0:39,40:0,0:0,0	90:0:0:0:0,0:84,84:0,0:6,6
6	134924610	.	G	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->GT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=DOWNSTREAM(MODIFIER|||||FAM8A6P|processed_pseudogene|NON_CODING|ENST00000407496||1),DOWNSTREAM(MODIFIER|||||RP11-557H15.5|lincRNA|NON_CODING|ENST00000412602||1),INTRON(MODIFIER|||||RP11-557H15.4|processed_transcript|NON_CODING|ENST00000434593|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:0:0:0:0,0:0,0:39,39:0,1	125:4:0:0:0,0:0,1:111,113:10,21
6	135595894	.	G	C	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	41:0:0:0:0,0:0,0:41,41:0,0	97:0:0:0:1,1:8,8:88,88:0,0
6	135714424	.	T	A	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1053|AHI1|protein_coding|CODING|ENST00000327035|22|1),INTRON(MODIFIER||||1196|AHI1|protein_coding|CODING|ENST00000265602|23|1),INTRON(MODIFIER||||1196|AHI1|protein_coding|CODING|ENST00000367800|21|1),INTRON(MODIFIER||||1196|AHI1|protein_coding|CODING|ENST00000457866|22|1),INTRON(MODIFIER||||498|AHI1|protein_coding|CODING|ENST00000417892|10|1),INTRON(MODIFIER|||||AHI1|nonsense_mediated_decay|CODING|ENST00000531788|23|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:0:0:0:0,0:0,0:0,0:37,37	101:1:0:0:13,14:0,0:0,0:87,88
6	140694918	.	T	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=TT->AT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	55:0:0:0:0,0:0,0:0,0:55,55	120:2:0:0:5,5:2,3:0,0:111,113
6	142325617	rs192449999	T	A	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=142325617;GMAF=0.0279;dbSNPBuildID=135;SSR=0;SAO=0;VP=050000000005000014000100;WGT=1;VC=SNV;ASP;KGPhase1;KGPROD	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:1:0:0:0,0:0,0:0,0:35,36	98:2:0:0:5,7:0,0:0,0:91,93
6	142325621	.	A	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:1:0:0:37,38:0,0:0,0:0,0	95:2:0:0:88,89:0,0:0,0:5,7
6	147037622	.	G	A	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1667|ADGB|protein_coding|CODING|ENST00000397944|14|1),INTRON(MODIFIER||||713|ADGB|protein_coding|CODING|ENST00000367493|14|1),INTRON(MODIFIER|||||ADGB|nonsense_mediated_decay|CODING|ENST00000493950|11|1),INTRON(MODIFIER|||||ADGB|retained_intron|CODING|ENST00000326929|14|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:0:0:0:0,0:0,0:36,36:0,0	92:0:0:0:8,8:0,0:84,84:0,0
6	147278351	.	G	A	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||STXBP5-AS1|processed_transcript|NON_CODING|ENST00000367477|8|1),INTRON(MODIFIER|||||STXBP5-AS1|processed_transcript|NON_CODING|ENST00000427394|7|1),INTRON(MODIFIER|||||STXBP5-AS1|processed_transcript|NON_CODING|ENST00000431143|6|1),INTRON(MODIFIER|||||STXBP5-AS1|processed_transcript|NON_CODING|ENST00000447072|4|1),INTRON(MODIFIER|||||STXBP5-AS1|processed_transcript|NON_CODING|ENST00000458125|4|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	44:0:0:0:0,0:0,0:44,46:0,0	93:2:0:0:7,8:0,0:84,87:0,0
6	147937399	rs610441	T	C	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||97|SAMD5|protein_coding|CODING|ENST00000566741|1|1);RSPOS=147937399;dbSNPBuildID=83;SSR=0;SAO=0;VP=050000000001000002000100;WGT=1;VC=SNV;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:0:0:0:0,0:0,0:0,0:35,35	117:6:0:0:0,0:14,17:0,0:97,105
6	149905964	rs12174765	G	T	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||125|GINM1|protein_coding|CODING|ENST00000433539||1),INTRON(MODIFIER||||330|GINM1|protein_coding|CODING|ENST00000367419|7|1);RSPOS=149905964;GMAF=0.2353;dbSNPBuildID=120;SSR=0;SAO=0;VP=050100080005040116000100;GENEINFO=C6orf72:116254;WGT=1;VC=SNV;SLO;INT;ASP;VLD;GNO;KGPhase1;KGPROD;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:0:0:0:0,0:0,0:39,39:0,0	101:0:1:0:0,0:0,0:94,94:7,7
6	151689855	.	A	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||514|ZBTB2|protein_coding|CODING|ENST00000325144|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:0:0:0:30,33:0,0:0,0:0,0	107:2:0:0:98,102:7,7:0,0:0,0
6	152110098	.	G	T	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||595|ESR1|protein_coding|CODING|ENST00000440973|2|1),INTRON(MODIFIER||||83|ESR1|protein_coding|CODING|ENST00000404742|2|1),INTRON(MODIFIER|||||ESR1|processed_transcript|CODING|ENST00000473497|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	41:0:0:0:0,0:0,0:41,41:0,0	112:4:0:0:0,0:0,0:96,98:12,17
6	152110117	.	C	A	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||595|ESR1|protein_coding|CODING|ENST00000440973|2|1),INTRON(MODIFIER||||83|ESR1|protein_coding|CODING|ENST00000404742|2|1),INTRON(MODIFIER|||||ESR1|processed_transcript|CODING|ENST00000473497|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:0:0:0:0,0:38,38:0,0:0,0	106:2:0:0:14,18:90,92:0,0:0,0
6	152110118	.	A	C	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||595|ESR1|protein_coding|CODING|ENST00000440973|2|1),INTRON(MODIFIER||||83|ESR1|protein_coding|CODING|ENST00000404742|2|1),INTRON(MODIFIER|||||ESR1|processed_transcript|CODING|ENST00000473497|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:0:0:0:38,38:0,0:0,0:0,0	106:2:0:0:93,95:11,15:0,0:0,0
6	156326736	.	A	C	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:0:0:0:40,40:0,0:0,0:0,0	94:1:0:0:84,85:9,9:0,0:0,0
6	157063965	.	T	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:0:0:0:0,0:0,0:0,0:32,32	109:1:0:0:0,0:6,6:0,1:102,103
6	157063967	.	C	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:0:0:0:0,0:32,32:0,0:0,0	109:1:0:0:0,0:103,105:0,0:5,5
6	157236546	.	T	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1758|ARID1B|protein_coding|CODING|ENST00000414678|3|1),INTRON(MODIFIER||||2231|ARID1B|protein_coding|CODING|ENST00000275248|3|1),INTRON(MODIFIER||||2236|ARID1B|protein_coding|CODING|ENST00000350026|3|1),INTRON(MODIFIER||||2249|ARID1B|protein_coding|CODING|ENST00000346085|4|1),INTRON(MODIFIER||||2289|ARID1B|protein_coding|CODING|ENST00000367148|3|1),INTRON(MODIFIER||||728|ARID1B|protein_coding|CODING|ENST00000319584|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:0:0:0:0,0:0,0:0,0:34,34	102:2:1:0:0,0:7,7:0,0:93,96
6	157735029	.	G	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||128|TMEM242|protein_coding|CODING|ENST00000367144||1),INTRON(MODIFIER||||141|TMEM242|protein_coding|CODING|ENST00000400788|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	86:9:0:0:1,1:0,0:76,133:0,0	180:14:0:0:8,21:1,3:156,264:1,1
6	159077276	.	G	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||542|SYTL3|protein_coding|CODING|ENST00000360448|2|1),INTRON(MODIFIER|||||SYTL3|processed_transcript|CODING|ENST00000469735|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:0:0:0:0,0:0,0:33,33:0,0	103:0:0:0:7,7:0,0:96,97:0,0
6	159605976	.	T	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1831|FNDC1|protein_coding|CODING|ENST00000340366|1|1),INTRON(MODIFIER||||1894|FNDC1|protein_coding|CODING|ENST00000297267|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:0:0:0:0,0:0,0:0,0:29,30	104:1:0:0:8,8:0,0:0,0:95,99
6	160548143	.	C	G	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=CC->CG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER||||483|SLC22A1|protein_coding|CODING|ENST00000457470|1|1),INTRON(MODIFIER||||506|SLC22A1|protein_coding|CODING|ENST00000324965|1|1),INTRON(MODIFIER||||554|SLC22A1|protein_coding|CODING|ENST00000366963|1|1),INTRON(MODIFIER|||||SLC22A1|nonsense_mediated_decay|CODING|ENST00000460902|1|1),INTRON(MODIFIER|||||SLC22A1|nonsense_mediated_decay|CODING|ENST00000539263|1|1),UPSTREAM(MODIFIER||||47|SLC22A1|protein_coding|CODING|ENST00000540443||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:0:0:0:0,0:40,43:0,0:0,0	108:6:0:0:1,1:96,113:5,5:0,0
6	161089783	.	A	G	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=AA->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER|||||RP1-81D8.4|unprocessed_pseudogene|NON_CODING|ENST00000452651|1|1),UPSTREAM(MODIFIER||||2040|LPA|protein_coding|CODING|ENST00000316300||1),UPSTREAM(MODIFIER||||2040|LPA|protein_coding|CODING|ENST00000447678||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	45:2:0:0:43,50:0,0:0,1:0,0	119:3:0:0:105,114:1,1:9,12:1,1
6	161126816	.	G	A	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=EXON(MODIFIER|||||PLG|retained_intron|CODING|ENST00000484367|1|1),INTRON(MODIFIER||||136|PLG|protein_coding|CODING|ENST00000366924|1|1),INTRON(MODIFIER||||165|PLG|protein_coding|CODING|ENST00000418964|1|1),INTRON(MODIFIER||||810|PLG|protein_coding|CODING|ENST00000308192|1|1),INTRON(MODIFIER|||||PLG|processed_transcript|CODING|ENST00000297289|1|1),INTRON(MODIFIER|||||PLG|processed_transcript|CODING|ENST00000462918|1|1),INTRON(MODIFIER|||||PLG|processed_transcript|CODING|ENST00000483038|1|1),UPSTREAM(MODIFIER|||||PLG|processed_transcript|CODING|ENST00000494325||1),UPSTREAM(MODIFIER|||||PLG|retained_intron|CODING|ENST00000471691||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:1:0:0:0,0:0,0:33,34:0,0	114:0:0:0:13,13:0,0:101,101:0,0
6	161896115	.	G	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||274|PARK2|protein_coding|CODING|ENST00000338468|8|1),INTRON(MODIFIER||||274|PARK2|protein_coding|CODING|ENST00000366894|8|1),INTRON(MODIFIER||||316|PARK2|protein_coding|CODING|ENST00000366896|6|1),INTRON(MODIFIER||||437|PARK2|protein_coding|CODING|ENST00000366897|8|1),INTRON(MODIFIER||||465|PARK2|protein_coding|CODING|ENST00000366898|9|1),INTRON(MODIFIER|||||PARK2|nonsense_mediated_decay|CODING|ENST00000479615|6|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	43:1:0:0:0,0:0,1:42,43:0,0	95:1:0:0:0,0:0,0:86,87:8,9
6	162436874	.	T	A	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||274|PARK2|protein_coding|CODING|ENST00000338468|4|1),INTRON(MODIFIER||||274|PARK2|protein_coding|CODING|ENST00000366894|4|1),INTRON(MODIFIER||||316|PARK2|protein_coding|CODING|ENST00000366896|2|1),INTRON(MODIFIER||||368|PARK2|protein_coding|CODING|ENST00000366892|5|1),INTRON(MODIFIER||||437|PARK2|protein_coding|CODING|ENST00000366897|4|1),INTRON(MODIFIER||||465|PARK2|protein_coding|CODING|ENST00000366898|5|1),INTRON(MODIFIER|||||PARK2|nonsense_mediated_decay|CODING|ENST00000479615|4|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	42:0:0:0:0,0:0,0:0,0:42,42	109:0:0:0:8,8:0,0:0,0:101,101
6	163311483	.	T	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||257|PACRG|protein_coding|CODING|ENST00000366888|2|1),INTRON(MODIFIER||||257|PACRG|protein_coding|CODING|ENST00000366889|3|1),INTRON(MODIFIER||||296|PACRG|protein_coding|CODING|ENST00000337019|3|1),INTRON(MODIFIER|||||PACRG|processed_transcript|CODING|ENST00000542669|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:0:0:0:0,0:0,0:0,0:32,32	110:2:0:0:11,11:0,0:0,0:97,99
6	163806361	.	G	C	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:0:0:0:0,0:0,0:34,34:0,0	93:1:0:0:0,0:5,5:86,88:1,1
6	164265783	.	G	C	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||Metazoa_SRP|misc_RNA|NON_CODING|ENST00000577957||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:0:0:0:0,0:0,0:39,39:0,0	104:2:0:0:0,1:5,5:96,97:1,1
6	166035523	.	A	G	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||779|PDE10A|protein_coding|CODING|ENST00000366882|1|1),INTRON(MODIFIER||||789|PDE10A|protein_coding|CODING|ENST00000539869|1|1),INTRON(MODIFIER|||||RP11-252P19.3|lincRNA|NON_CODING|ENST00000580695|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	44:0:0:0:44,44:0,0:0,0:0,0	108:0:0:0:99,99:0,0:9,9:0,0
6	166702214	.	T	G	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	41:3:0:0:0,0:1,1:0,0:37,69	107:8:0:0:0,1:0,1:7,9:92,155
6	167067836	.	G	A	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||140|RPS6KA2|protein_coding|CODING|ENST00000507371|1|1),INTRON(MODIFIER||||170|RPS6KA2|protein_coding|CODING|ENST00000506565|4|1),INTRON(MODIFIER||||741|RPS6KA2|protein_coding|CODING|ENST00000503859|2|1),INTRON(MODIFIER||||758|RPS6KA2|protein_coding|CODING|ENST00000510118|3|1),INTRON(MODIFIER||||95|RPS6KA2|protein_coding|CODING|ENST00000512860|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:0:0:0:0,0:0,0:33,33:0,0	97:0:0:0:11,11:0,0:86,86:0,0
6	167312295	.	A	C	.	PASS	NT=ref;QSS=24;QSS_NT=24;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||95|RPS6KA2|protein_coding|CODING|ENST00000512860|1|1),UPSTREAM(MODIFIER|||||RPS6KA2-AS1|antisense|NON_CODING|ENST00000455390||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	49:0:0:0:48,49:0,0:1,1:0,0	115:3:1:0:107,110:5,6:0,0:0,0
6	167799008	rs146223296	A	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER||||107|TCP10|protein_coding|CODING|ENST00000476779||1),UPSTREAM(MODIFIER||||207|TCP10|protein_coding|CODING|ENST00000460930||1),UPSTREAM(MODIFIER||||298|TCP10|protein_coding|CODING|ENST00000366827||1),UPSTREAM(MODIFIER||||326|TCP10|protein_coding|CODING|ENST00000397829||1),UPSTREAM(MODIFIER||||94|TCP10|protein_coding|CODING|ENST00000485157||1),UPSTREAM(MODIFIER|||||TCP10|retained_intron|CODING|ENST00000463894||1),UPSTREAM(MODIFIER|||||TCP10|retained_intron|CODING|ENST00000491085||1),UPSTREAM(MODIFIER|||||TCP10|retained_intron|CODING|ENST00000508373||1);RSPOS=167799008;dbSNPBuildID=134;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	23:1:0:0:21,22:0,0:1,1:0,0	45:6:0:0:29,29:0,1:10,13:0,1
6	168110271	.	G	A	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=GG->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	47:2:0:0:0,1:0,1:45,47:0,0	84:1:0:0:7,7:0,1:76,80:0,0
6	168591326	rs111734724	G	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||RP11-503C24.1|lincRNA|NON_CODING|ENST00000457340||1);RSPOS=168591326;dbSNPBuildID=132;SSR=0;SAO=0;VP=050000000001040102000100;WGT=1;VC=SNV;VLD;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	49:0:0:0:1,1:0,0:48,51:0,0	98:3:0:0:11,13:2,2:82,94:0,0
6	168974097	.	G	C	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||446|SMOC2|protein_coding|CODING|ENST00000356284|7|1),INTRON(MODIFIER||||457|SMOC2|protein_coding|CODING|ENST00000354536|7|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	71:1:0:0:0,0:1,1:69,72:0,0	96:5:0:0:0,0:9,11:82,90:0,0
6	169060433	rs111709776	G	A	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=GG->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER||||446|SMOC2|protein_coding|CODING|ENST00000356284|11|1),INTRON(MODIFIER||||457|SMOC2|protein_coding|CODING|ENST00000354536|11|1),INTRON(MODIFIER||||84|SMOC2|protein_coding|CODING|ENST00000417208|1|1),INTRON(MODIFIER|||||SMOC2|nonsense_mediated_decay|CODING|ENST00000392100|2|1),INTRON(MODIFIER|||||SMOC2|processed_transcript|CODING|ENST00000477998|1|1);RSPOS=169060433;dbSNPBuildID=132;SSR=0;SAO=0;VP=050100080005000102000100;GENEINFO=SMOC2:64094;WGT=1;VC=SNV;SLO;INT;ASP;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	82:20:0:0:1,5:0,0:61,124:0,0	217:29:0:0:20,28:0,0:168,274:0,0
6	169256349	rs35350962	A	G	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=169256349;dbSNPBuildID=126;SSR=0;SAO=0;VP=050000000001000002000100;WGT=1;VC=SNV;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:1:0:0:39,58:0,0:0,1:0,0	97:2:0:0:88,133:0,2:7,11:0,0
6	169525225	rs12526600	C	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=169525225;GMAF=0.1099;dbSNPBuildID=120;SSR=0;SAO=0;VP=050000000001040016000100;WGT=1;VC=SNV;VLD;KGPhase1;KGPROD;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:4:0:0:0,0:26,33:0,0:0,0	81:10:0:0:0,0:60,72:0,1:11,14
6	169725966	rs113803700	C	T	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=CC->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=169725966;GMAF=0.2912;dbSNPBuildID=132;SSR=0;SAO=0;VP=050000000005030116000100;WGT=1;VC=SNV;ASP;G5A;G5;GNO;KGPhase1;KGPROD;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	45:2:0:0:0,0:42,44:1,1:0,2	114:3:0:0:0,0:92,95:1,1:18,23
6	169825943	rs73251402	C	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=169825943;GMAF=0.3384;dbSNPBuildID=130;SSR=0;SAO=0;VP=05010000000503011e000100;WGT=1;VC=SNV;SLO;ASP;G5A;G5;GNO;KGPhase1;KGPilot123;KGPROD;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:0:24:0:0,0:32,32:1,1:0,0	41:1:38:0:0,0:36,37:0,1:4,4
6	170039354	.	G	A	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||730|WDR27|protein_coding|CODING|ENST00000423258|14|1),INTRON(MODIFIER||||857|WDR27|protein_coding|CODING|ENST00000333572|17|1),INTRON(MODIFIER||||895|WDR27|protein_coding|CODING|ENST00000448612|17|1),INTRON(MODIFIER|||||WDR27|processed_transcript|CODING|ENST00000479310|3|1),INTRON(MODIFIER|||||WDR27|processed_transcript|CODING|ENST00000546525|13|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	43:0:0:0:0,0:0,0:43,43:0,0	107:4:0:0:5,6:0,0:97,104:1,1
6	170045401	.	A	G	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||730|WDR27|protein_coding|CODING|ENST00000423258|13|1),INTRON(MODIFIER||||857|WDR27|protein_coding|CODING|ENST00000333572|16|1),INTRON(MODIFIER||||895|WDR27|protein_coding|CODING|ENST00000448612|16|1),INTRON(MODIFIER|||||WDR27|processed_transcript|CODING|ENST00000479310|2|1),INTRON(MODIFIER|||||WDR27|processed_transcript|CODING|ENST00000546525|12|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	43:1:0:0:42,46:0,0:0,0:0,0	104:6:0:0:92,102:0,0:6,6:0,0
6	170209984	.	G	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=EXON(MODIFIER|||||RP1-182D15.2|lincRNA|NON_CODING|ENST00000427017|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:0:0:0:0,0:0,0:29,32:0,0	107:3:0:0:0,0:10,11:94,98:0,0
6	170214529	.	G	C	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=GG->CG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||RP1-182D15.2|lincRNA|NON_CODING|ENST00000427017||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	60:2:0:0:0,0:1,2:57,61:0,0	134:7:0:0:0,0:9,13:117,124:1,1
6	170454168	.	C	G	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	43:2:0:0:2,2:39,41:0,0:0,0	97:8:0:0:3,5:77,81:9,11:0,1
6	170529464	.	G	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->CG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:3:0:0:0,0:0,1:29,48:0,0	113:8:0:0:0,0:16,20:89,123:0,0
6	170573945	.	T	C	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||RP5-1086L22.1|antisense|NON_CODING|ENST00000452071||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:2:0:0:0,0:0,0:0,0:38,40	57:1:0:0:0,0:6,11:0,0:50,51
6	170575853	rs143399198	G	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||RP5-1086L22.1|antisense|NON_CODING|ENST00000452071||1);RSPOS=170575853;GMAF=0.022;dbSNPBuildID=134;SSR=0;SAO=0;VP=050000000005000014000100;WGT=1;VC=SNV;ASP;KGPhase1;KGPROD	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	49:0:0:0:0,0:1,1:48,55:0,0	111:0:0:0:0,0:8,10:103,118:0,0
6	170779330	.	A	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AC;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	47:2:0:0:45,48:0,1:0,0:0,0	103:0:0:0:94,98:9,9:0,0:0,0
6	170817841	.	T	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:3:0:0:0,1:0,0:0,1:33,54	96:2:0:0:6,17:0,1:0,2:88,127
7	288424	.	T	C	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||584|FAM20C|protein_coding|CODING|ENST00000313766|5|1),INTRON(MODIFIER|||||FAM20C|retained_intron|CODING|ENST00000515795|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	50:3:0:0:0,0:1,1:1,2:45,49	132:4:0:0:0,0:7,7:1,2:120,127
7	311910	.	A	G	.	PASS	NT=ref;QSS=23;QSS_NT=23;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	59:1:0:0:55,55:1,2:1,1:1,1	88:3:0:0:75,75:0,0:10,11:0,2
7	343983	.	C	G	.	PASS	NT=ref;QSS=24;QSS_NT=24;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	50:0:0:0:0,0:50,51:0,0:0,0	123:3:0:0:0,0:113,117:7,8:0,0
7	376315	.	C	A	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	44:3:0:0:0,0:41,46:0,0:0,0	100:13:0:0:9,10:78,92:0,0:0,1
7	833457	.	G	A	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||843|HEATR2|protein_coding|CODING|ENST00000313147||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:0:0:0:0,0:0,0:40,40:0,0	104:0:0:0:8,8:0,0:96,98:0,0
7	1155158	.	A	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||191|C7orf50|protein_coding|CODING|ENST00000491163|2|1),INTRON(MODIFIER||||194|C7orf50|protein_coding|CODING|ENST00000357429|2|1),INTRON(MODIFIER||||194|C7orf50|protein_coding|CODING|ENST00000397098|2|1),INTRON(MODIFIER||||194|C7orf50|protein_coding|CODING|ENST00000397100|2|1),INTRON(MODIFIER|||||C7orf50|processed_transcript|CODING|ENST00000488073|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	41:1:0:0:39,40:0,0:1,1:0,0	118:3:0:0:103,109:0,0:12,13:0,0
7	1867458	.	G	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER||||265|MAD1L1|protein_coding|CODING|ENST00000450235|5|1),INTRON(MODIFIER||||626|MAD1L1|protein_coding|CODING|ENST00000402746|16|1),INTRON(MODIFIER||||718|MAD1L1|protein_coding|CODING|ENST00000265854|17|1),INTRON(MODIFIER||||718|MAD1L1|protein_coding|CODING|ENST00000399654|18|1),INTRON(MODIFIER||||718|MAD1L1|protein_coding|CODING|ENST00000406869|18|1),INTRON(MODIFIER|||||MAD1L1|processed_transcript|CODING|ENST00000481633|1|1),INTRON(MODIFIER|||||MAD1L1|processed_transcript|CODING|ENST00000496548|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	67:2:0:0:0,2:1,1:64,67:0,0	132:5:0:0:10,10:0,0:117,129:0,0
7	2001576	rs183851110	C	G	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||198|MAD1L1|protein_coding|CODING|ENST00000438959|5|1),INTRON(MODIFIER||||265|MAD1L1|protein_coding|CODING|ENST00000450235|2|1),INTRON(MODIFIER||||626|MAD1L1|protein_coding|CODING|ENST00000402746|13|1),INTRON(MODIFIER||||718|MAD1L1|protein_coding|CODING|ENST00000265854|14|1),INTRON(MODIFIER||||718|MAD1L1|protein_coding|CODING|ENST00000399654|15|1),INTRON(MODIFIER||||718|MAD1L1|protein_coding|CODING|ENST00000406869|15|1);RSPOS=2001576;GMAF=0.011;dbSNPBuildID=135;SSR=0;SAO=0;VP=050000080005000014000100;GENEINFO=MAD1L1:8379;WGT=1;VC=SNV;INT;ASP;KGPhase1;KGPROD	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	42:0:0:0:1,1:40,40:1,1:0,0	103:3:0:0:0,1:85,85:15,18:0,0
7	2286226	.	C	T	.	PASS	NT=ref;QSS=25;QSS_NT=25;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||36|NUDT1|protein_coding|CODING|ENST00000454650||1),INTRON(MODIFIER||||156|NUDT1|protein_coding|CODING|ENST00000339737|2|1),INTRON(MODIFIER||||156|NUDT1|protein_coding|CODING|ENST00000356714|2|1),INTRON(MODIFIER||||156|NUDT1|protein_coding|CODING|ENST00000397046|3|1),INTRON(MODIFIER||||179|NUDT1|protein_coding|CODING|ENST00000343985|2|1),INTRON(MODIFIER||||179|NUDT1|protein_coding|CODING|ENST00000397048|3|1),INTRON(MODIFIER||||179|NUDT1|protein_coding|CODING|ENST00000397049|3|1),INTRON(MODIFIER|||||NUDT1|processed_transcript|CODING|ENST00000471348|1|1),UPSTREAM(MODIFIER||||145|FTSJ2|protein_coding|CODING|ENST00000440306||1),UPSTREAM(MODIFIER||||246|FTSJ2|protein_coding|CODING|ENST00000242257||1),UPSTREAM(MODIFIER|||||FTSJ2|processed_transcript|CODING|ENST00000467199||1),UPSTREAM(MODIFIER|||||FTSJ2|processed_transcript|CODING|ENST00000486040||1),UPSTREAM(MODIFIER|||||NUDT1|processed_transcript|CODING|ENST00000487426||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	49:0:0:0:0,0:49,49:0,0:0,0	104:2:0:0:0,0:97,100:0,0:5,5
7	2307684	.	C	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER||||159|SNX8|protein_coding|CODING|ENST00000435336|5|1),INTRON(MODIFIER||||175|SNX8|protein_coding|CODING|ENST00000457286|5|1),INTRON(MODIFIER||||223|SNX8|protein_coding|CODING|ENST00000435060|5|1),INTRON(MODIFIER||||465|SNX8|protein_coding|CODING|ENST00000222990|5|1),INTRON(MODIFIER|||||SNX8|retained_intron|CODING|ENST00000479689|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	63:5:0:0:0,0:58,73:0,0:0,0	97:7:0:0:0,0:86,104:0,0:4,4
7	2333402	.	T	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||159|SNX8|protein_coding|CODING|ENST00000435336|1|1),INTRON(MODIFIER||||175|SNX8|protein_coding|CODING|ENST00000457286|1|1),INTRON(MODIFIER||||223|SNX8|protein_coding|CODING|ENST00000435060|1|1),INTRON(MODIFIER||||41|SNX8|protein_coding|CODING|ENST00000419693|1|1),INTRON(MODIFIER||||465|SNX8|protein_coding|CODING|ENST00000222990|1|1),INTRON(MODIFIER||||84|SNX8|protein_coding|CODING|ENST00000447136|2|1),INTRON(MODIFIER|||||SNX8|retained_intron|CODING|ENST00000494722|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:0:0:0:0,0:0,0:0,0:33,33	90:1:0:0:7,7:0,0:0,0:82,86
7	3851459	.	T	C	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=TT->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER||||2193|SDK1|protein_coding|CODING|ENST00000389531|4|1),INTRON(MODIFIER||||2213|SDK1|protein_coding|CODING|ENST00000404826|4|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	49:0:0:0:0,0:0,0:0,0:49,49	104:2:0:0:0,0:4,4:0,0:98,100
7	3962116	.	A	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||2193|SDK1|protein_coding|CODING|ENST00000389531|5|1),INTRON(MODIFIER||||2213|SDK1|protein_coding|CODING|ENST00000404826|5|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:0:0:0:32,32:0,0:0,0:0,0	109:1:0:0:99,101:9,9:0,0:0,0
7	4179337	rs60883057	A	G	.	PASS	NT=ref;QSS=25;QSS_NT=25;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||2193|SDK1|protein_coding|CODING|ENST00000389531|28|1),INTRON(MODIFIER||||2213|SDK1|protein_coding|CODING|ENST00000404826|28|1),INTRON(MODIFIER|||||SDK1|retained_intron|CODING|ENST00000476701|2|1);RSPOS=4179337;dbSNPBuildID=129;SSR=0;SAO=0;VP=050000080005000002000100;GENEINFO=SDK1:221935;WGT=1;VC=SNV;INT;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	57:0:0:0:56,59:0,0:1,2:0,0	138:5:2:0:111,118:0,1:22,27:0,0
7	5299203	.	A	G	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	54:2:0:0:52,54:0,0:0,0:0,0	113:1:0:0:107,110:0,0:5,5:0,0
7	5473533	.	G	A	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||FBXL18|nonsense_mediated_decay|CODING|ENST00000415009|6|1),UPSTREAM(MODIFIER||||221|AC092171.1|protein_coding|CODING|ENST00000382426||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:1:0:0:0,0:0,0:38,40:0,0	106:2:0:0:11,12:1,2:92,95:0,0
7	6710416	rs1852192	T	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER|||||AC073343.13|processed_transcript|NON_CODING|ENST00000366167|2|1),INTRON(MODIFIER|||||AC073343.13|processed_transcript|NON_CODING|ENST00000430844|2|1),UPSTREAM(MODIFIER||||202|AC073343.1|protein_coding|CODING|ENST00000328239||1),UPSTREAM(MODIFIER||||222|AC073343.1|protein_coding|CODING|ENST00000542006||1),UPSTREAM(MODIFIER||||379|AC073343.1|protein_coding|CODING|ENST00000399484||1),UPSTREAM(MODIFIER||||388|AC073343.1|protein_coding|CODING|ENST00000401847||1),UPSTREAM(MODIFIER||||389|AC073343.1|protein_coding|CODING|ENST00000544825||1);RSPOS=6710416;GMAF=0.4006;dbSNPBuildID=92;SSR=0;SAO=0;VP=050100000001040016000100;WGT=1;VC=SNV;SLO;VLD;KGPhase1;KGPROD;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	48:1:0:0:0,0:0,1:0,0:47,54	97:1:0:0:0,0:6,7:2,2:88,98
7	7157618	.	C	T	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	44:0:0:0:0,0:44,45:0,0:0,0	112:2:0:0:0,0:104,105:0,0:6,7
7	8752073	.	C	T	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||138|NXPH1|protein_coding|CODING|ENST00000438764|2|1),INTRON(MODIFIER||||142|NXPH1|protein_coding|CODING|ENST00000429542|1|1),INTRON(MODIFIER||||154|NXPH1|protein_coding|CODING|ENST00000417186|3|1),INTRON(MODIFIER||||271|NXPH1|protein_coding|CODING|ENST00000405863|2|1),INTRON(MODIFIER|||||NXPH1|processed_transcript|CODING|ENST00000497400|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	42:0:0:0:0,0:42,42:0,0:0,0	124:1:0:0:0,0:115,116:0,0:8,8
7	9019643	.	C	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:0:0:0:0,0:32,32:0,0:0,0	108:0:0:0:0,0:97,97:0,0:11,11
7	9522501	.	A	G	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:0:0:0:38,38:0,0:0,0:0,0	84:1:0:0:77,79:0,0:5,5:1,1
7	10032846	.	A	G	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:0:0:0:36,36:0,0:0,0:1,1	87:2:0:0:73,76:0,0:12,12:0,0
7	10108983	.	G	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:0:0:0:0,0:0,0:30,30:0,0	117:1:0:0:0,0:0,0:110,112:6,6
7	10628448	.	G	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:0:0:0:0,0:0,0:32,32:1,1	106:0:0:0:0,0:6,6:100,100:0,0
7	11331075	.	T	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||AC004538.3|antisense|NON_CODING|ENST00000421121|1|1),INTRON(MODIFIER|||||AC004538.3|antisense|NON_CODING|ENST00000428533|1|1),INTRON(MODIFIER|||||AC004538.3|antisense|NON_CODING|ENST00000428967|4|1),INTRON(MODIFIER|||||AC004538.3|antisense|NON_CODING|ENST00000441110|4|1),INTRON(MODIFIER|||||AC004538.3|antisense|NON_CODING|ENST00000445839|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:1:0:0:0,0:0,0:0,0:39,40	110:0:0:0:0,0:1,1:4,4:105,106
7	11724947	.	A	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1657|THSD7A|protein_coding|CODING|ENST00000423059|1|1),INTRON(MODIFIER|||||THSD7A|processed_transcript|CODING|ENST00000480061|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:0:0:0:30,31:1,1:0,0:0,0	123:0:0:0:113,113:0,0:0,0:10,10
7	15362610	rs201200693	A	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||445|AGMO|protein_coding|CODING|ENST00000342526|12|1);RSPOS=15362610;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000080005000002000100;WGT=1;VC=SNV;INT;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:3:0:0:31,34:0,0:0,0:0,0	94:9:0:0:79,89:0,0:0,0:6,6
7	15533411	.	C	G	.	PASS	NT=ref;QSS=23;QSS_NT=23;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||445|AGMO|protein_coding|CODING|ENST00000342526|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	45:0:0:0:0,0:45,46:0,0:0,0	104:0:0:0:0,0:98,99:6,6:0,0
7	16402327	.	G	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||401|ISPD|protein_coding|CODING|ENST00000399310|2|1),INTRON(MODIFIER||||451|ISPD|protein_coding|CODING|ENST00000407010|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:2:0:0:0,0:0,0:37,39:0,0	82:1:0:0:0,0:4,4:77,78:0,0
7	19259437	rs201629405	T	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=19259437;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000000015000002000100;WGT=1;VC=SNV;OTH;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	41:9:0:0:0,0:0,0:0,0:32,42	89:16:0:0:0,0:5,5:0,0:68,86
7	19259492	.	G	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:2:0:0:0,0:0,0:30,32:0,0	90:7:1:0:0,2:1,1:76,82:6,6
7	19844179	.	A	C	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:1:0:0:35,36:0,0:0,0:0,0	99:1:0:0:93,94:5,5:0,0:0,0
7	20707713	.	C	T	.	PASS	NT=ref;QSS=27;QSS_NT=27;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||126|ABCB5|protein_coding|CODING|ENST00000406935||1),INTRON(MODIFIER||||1257|ABCB5|protein_coding|CODING|ENST00000404938|14|1),INTRON(MODIFIER||||812|ABCB5|protein_coding|CODING|ENST00000258738|5|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:0:0:0:0,0:40,50:0,0:0,0	65:0:0:0:0,0:54,65:0,0:11,15
7	21094292	.	A	G	.	PASS	NT=ref;QSS=26;QSS_NT=26;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	53:1:0:0:52,52:0,1:0,0:0,0	103:0:0:0:93,93:0,0:10,10:0,0
7	21628522	.	T	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||4523|DNAH11|protein_coding|CODING|ENST00000328843|11|1),INTRON(MODIFIER|||||DNAH11|processed_transcript|CODING|ENST00000409508|11|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:1:0:0:0,0:0,0:0,0:30,31	90:0:0:0:0,0:11,11:0,0:79,79
7	21752961	.	T	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||4523|DNAH11|protein_coding|CODING|ENST00000328843|43|1),INTRON(MODIFIER|||||DNAH11|processed_transcript|CODING|ENST00000409508|42|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:0:0:0:0,0:0,0:1,1:29,29	105:0:1:0:8,8:0,0:0,0:97,97
7	22272518	.	C	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||400|RAPGEF5|protein_coding|CODING|ENST00000405243|7|1),INTRON(MODIFIER||||730|RAPGEF5|protein_coding|CODING|ENST00000344041|7|1),INTRON(MODIFIER|||||RAPGEF5|processed_transcript|CODING|ENST00000475788|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:1:0:0:0,0:31,32:0,0:0,0	106:1:0:0:0,0:99,100:0,0:6,6
7	23873298	.	G	T	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||1019|STK31|protein_coding|CODING|ENST00000355870||1),DOWNSTREAM(MODIFIER||||996|STK31|protein_coding|CODING|ENST00000354639||1),DOWNSTREAM(MODIFIER||||996|STK31|protein_coding|CODING|ENST00000428484||1),DOWNSTREAM(MODIFIER||||996|STK31|protein_coding|CODING|ENST00000433467||1),DOWNSTREAM(MODIFIER|||||STK31|processed_transcript|CODING|ENST00000405627||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:0:0:0:0,0:0,0:36,36:0,0	100:1:0:0:0,0:0,0:94,95:5,5
7	25400653	.	G	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->GT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||RP5-978I12.1|lincRNA|NON_CODING|ENST00000562268||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:0:1:0:0,0:0,0:31,31:0,0	64:2:6:0:0,0:0,0:55,58:7,7
7	25737082	.	G	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||AC003090.1|processed_transcript|NON_CODING|ENST00000456777|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:0:0:0:2,2:0,0:32,32:0,0	89:3:0:0:0,2:5,5:81,82:0,0
7	27055932	.	A	G	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:0:0:0:36,36:0,0:0,0:0,0	86:1:0:0:77,79:0,0:8,8:0,0
7	29495595	.	G	T	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||179|CHN2|protein_coding|CODING|ENST00000446446|1|1),INTRON(MODIFIER||||192|CHN2|protein_coding|CODING|ENST00000435288|6|1),INTRON(MODIFIER||||324|CHN2|protein_coding|CODING|ENST00000539389|3|1),INTRON(MODIFIER||||453|CHN2|protein_coding|CODING|ENST00000546235|6|1),INTRON(MODIFIER||||468|CHN2|protein_coding|CODING|ENST00000222792|6|1),INTRON(MODIFIER||||481|CHN2|protein_coding|CODING|ENST00000495789|7|1),INTRON(MODIFIER||||543|CHN2|protein_coding|CODING|ENST00000539406|7|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	44:0:0:0:0,0:0,0:44,44:0,0	94:1:0:0:0,0:0,0:87,87:6,7
7	31240667	.	A	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:0:0:0:30,31:0,0:0,0:0,0	102:1:0:0:93,94:0,0:8,8:0,0
7	31559234	rs200106459	C	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1044|CCDC129|protein_coding|CODING|ENST00000407970|1|1),INTRON(MODIFIER||||141|CCDC129|protein_coding|CODING|ENST00000409717|1|1),INTRON(MODIFIER||||167|CCDC129|protein_coding|CODING|ENST00000456011|1|1),INTRON(MODIFIER||||896|CCDC129|protein_coding|CODING|ENST00000319386|1|1);RSPOS=31559234;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000080005000002000100;WGT=1;VC=SNV;INT;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	27:0:0:0:0,0:27,27:0,0:0,0	90:0:0:0:6,6:84,85:0,0:0,0
7	32427201	.	G	C	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	48:5:0:0:0,0:0,1:43,58:0,0	95:6:0:0:0,0:5,6:84,103:0,1
7	32806242	.	G	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||463|AVL9|protein_coding|CODING|ENST00000404479|10|1),UPSTREAM(MODIFIER|||||AC018633.4|unprocessed_pseudogene|NON_CODING|ENST00000417811||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:1:0:0:0,0:0,0:28,28:0,1	113:1:0:0:0,0:9,10:102,102:1,1
7	34006338	.	C	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||BMPER|nonsense_mediated_decay|CODING|ENST00000444773||1),INTRON(MODIFIER||||158|BMPER|protein_coding|CODING|ENST00000436222|3|1),INTRON(MODIFIER||||685|BMPER|protein_coding|CODING|ENST00000297161|5|1),INTRON(MODIFIER||||685|BMPER|protein_coding|CODING|ENST00000426693|4|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:0:0:0:0,0:36,36:0,0:0,0	90:0:0:0:1,1:85,85:0,0:4,4
7	34949104	rs202169057	G	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=34949104;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:0:1:0:0,0:0,0:34,34:0,0	92:0:7:0:0,0:7,8:85,86:0,0
7	34949117	rs200220618	A	G	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=34949117;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:0:0:0:35,35:0,0:0,0:0,0	102:0:0:0:94,97:0,0:7,8:1,1
7	35426367	.	G	A	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:1:0:0:0,0:0,0:39,40:0,0	102:4:0:0:5,5:0,0:93,97:0,0
7	37906374	.	A	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||114|NME8|protein_coding|CODING|ENST00000455500||1),DOWNSTREAM(MODIFIER||||149|NME8|protein_coding|CODING|ENST00000444718||1),INTRON(MODIFIER||||122|EPDR1|protein_coding|CODING|ENST00000476620|2|1),INTRON(MODIFIER||||588|NME8|protein_coding|CODING|ENST00000199447|10|1),INTRON(MODIFIER||||588|NME8|protein_coding|CODING|ENST00000440017|9|1),INTRON(MODIFIER|||||NME8|nonsense_mediated_decay|CODING|ENST00000426106|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:1:0:0:30,31:1,1:0,0:0,0	101:0:0:0:94,95:0,0:7,7:0,0
7	40827760	.	G	C	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||AC005160.3|sense_intronic|NON_CODING|ENST00000432405||1),INTRON(MODIFIER||||397|C7orf10|protein_coding|CODING|ENST00000401647|12|1),INTRON(MODIFIER||||445|C7orf10|protein_coding|CODING|ENST00000335693|13|1),INTRON(MODIFIER||||471|C7orf10|protein_coding|CODING|ENST00000309930|14|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	50:1:0:0:0,0:0,0:49,50:0,0	98:3:0:0:0,0:4,5:90,92:1,1
7	41191238	.	G	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:0:0:0:0,0:0,0:31,31:0,0	102:0:0:0:0,0:1,1:93,93:8,8
7	41719545	.	C	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||AC005027.3|processed_transcript|NON_CODING|ENST00000416150|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:0:0:0:1,1:31,31:0,0:0,0	122:1:0:0:0,0:115,116:0,0:6,6
7	42089767	.	C	A	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1580|GLI3|protein_coding|CODING|ENST00000395925|4|1),INTRON(MODIFIER||||179|GLI3|protein_coding|CODING|ENST00000448703|4|1),INTRON(MODIFIER|||||GLI3|processed_transcript|CODING|ENST00000479210|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:0:0:0:0,0:35,35:0,0:0,0	95:2:0:0:7,7:85,87:0,0:1,1
7	42294676	.	T	C	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:1:0:0:1,1:0,0:0,0:33,34	92:5:0:0:0,0:9,10:0,0:78,82
7	42323976	.	G	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	27:0:0:0:0,0:0,0:27,27:0,0	97:0:1:0:8,8:2,2:87,88:0,0
7	42527439	rs34608332	T	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=42527439;dbSNPBuildID=126;SSR=0;SAO=0;VP=050000000001000002000100;WGT=1;VC=SNV;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:3:0:0:0,0:0,0:0,0:31,34	79:6:0:0:6,6:0,0:0,0:67,75
7	43468936	.	C	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1572|HECW1|protein_coding|CODING|ENST00000453890|7|1),INTRON(MODIFIER||||1606|HECW1|protein_coding|CODING|ENST00000395891|8|1),INTRON(MODIFIER|||||HECW1|processed_transcript|CODING|ENST00000471043|3|1),INTRON(MODIFIER|||||HECW1|processed_transcript|CODING|ENST00000492310|6|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:2:1:0:0,0:29,31:0,0:0,0	82:0:2:0:0,0:77,78:0,0:5,5
7	44346392	.	G	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||167|CAMK2B|protein_coding|CODING|ENST00000424197|1|1),INTRON(MODIFIER||||172|CAMK2B|protein_coding|CODING|ENST00000415369|1|1),INTRON(MODIFIER||||179|CAMK2B|protein_coding|CODING|ENST00000421607|1|1),INTRON(MODIFIER||||305|CAMK2B|protein_coding|CODING|ENST00000502837|1|1),INTRON(MODIFIER||||449|CAMK2B|protein_coding|CODING|ENST00000346990|1|1),INTRON(MODIFIER||||479|CAMK2B|protein_coding|CODING|ENST00000353625|1|1),INTRON(MODIFIER||||492|CAMK2B|protein_coding|CODING|ENST00000347193|1|1),INTRON(MODIFIER||||503|CAMK2B|protein_coding|CODING|ENST00000358707|1|1),INTRON(MODIFIER||||517|CAMK2B|protein_coding|CODING|ENST00000258682|1|1),INTRON(MODIFIER||||518|CAMK2B|protein_coding|CODING|ENST00000395747|1|1),INTRON(MODIFIER||||518|CAMK2B|protein_coding|CODING|ENST00000457475|1|1),INTRON(MODIFIER||||542|CAMK2B|protein_coding|CODING|ENST00000350811|1|1),INTRON(MODIFIER||||542|CAMK2B|protein_coding|CODING|ENST00000440254|1|1),INTRON(MODIFIER||||666|CAMK2B|protein_coding|CODING|ENST00000395749|1|1),INTRON(MODIFIER|||||CAMK2B|nonsense_mediated_decay|CODING|ENST00000353185|1|1),INTRON(MODIFIER|||||CAMK2B|nonsense_mediated_decay|CODING|ENST00000523845|1|1),INTRON(MODIFIER|||||CAMK2B|processed_transcript|CODING|ENST00000427209|1|1),INTRON(MODIFIER|||||CAMK2B|processed_transcript|CODING|ENST00000470984|1|1),INTRON(MODIFIER|||||CAMK2B|processed_transcript|CODING|ENST00000495819|1|1),INTRON(MODIFIER|||||CAMK2B|processed_transcript|CODING|ENST00000497584|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:1:0:0:0,0:0,0:28,33:0,0	75:5:0:0:6,6:0,0:64,74:0,0
7	46373571	.	A	T	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||AC092657.2|lincRNA|NON_CODING|ENST00000436266|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	41:0:0:0:41,41:0,0:0,0:0,0	114:0:0:0:105,105:0,0:0,0:9,9
7	48299095	.	G	A	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||5058|ABCA13|protein_coding|CODING|ENST00000435803|15|1),INTRON(MODIFIER|||||ABCA13|nonsense_mediated_decay|CODING|ENST00000417403|16|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:1:0:0:0,0:0,0:39,40:0,0	100:1:0:0:9,9:0,0:90,91:0,0
7	48943605	.	T	C	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||GDI2P1|processed_pseudogene|NON_CODING|ENST00000429312||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:1:0:0:0,0:0,0:0,0:34,35	104:3:0:0:1,1:7,8:0,0:93,95
7	49137014	.	C	A	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:1:0:0:0,0:38,39:0,0:0,0	101:0:0:0:10,10:91,91:0,0:0,0
7	50014442	rs78783038	A	G	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||350|ZPBP|protein_coding|CODING|ENST00000419417|7|1),INTRON(MODIFIER||||351|ZPBP|protein_coding|CODING|ENST00000046087|7|1),INTRON(MODIFIER|||||ZPBP|processed_transcript|CODING|ENST00000491129|2|1);RSPOS=50014442;dbSNPBuildID=132;SSR=16;SAO=0;VP=050000080001000102000100;GENEINFO=ZPBP:11055;WGT=1;VC=SNV;INT;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	44:0:0:0:44,45:0,0:0,0:0,0	106:0:0:0:100,103:0,0:6,6:0,0
7	50781307	rs200004111	C	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER||||113|GRB10|protein_coding|CODING|ENST00000439044|2|1),INTRON(MODIFIER||||536|GRB10|protein_coding|CODING|ENST00000335866|2|1),INTRON(MODIFIER||||536|GRB10|protein_coding|CODING|ENST00000402497|1|1),INTRON(MODIFIER||||536|GRB10|protein_coding|CODING|ENST00000402578|2|1),INTRON(MODIFIER||||536|GRB10|protein_coding|CODING|ENST00000406641|1|1),INTRON(MODIFIER||||536|GRB10|protein_coding|CODING|ENST00000407526|1|1),INTRON(MODIFIER||||548|GRB10|protein_coding|CODING|ENST00000357271|1|1),INTRON(MODIFIER||||588|GRB10|protein_coding|CODING|ENST00000403097|2|1),INTRON(MODIFIER||||594|GRB10|protein_coding|CODING|ENST00000398812|1|1),INTRON(MODIFIER||||594|GRB10|protein_coding|CODING|ENST00000401949|4|1),UPSTREAM(MODIFIER||||588|GRB10|protein_coding|CODING|ENST00000439599||1);RSPOS=50781307;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000080005000002000100;WGT=1;VC=SNV;INT;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	49:2:0:0:0,0:47,62:0,0:0,2	123:9:0:0:0,0:105,158:0,0:9,10
7	51059255	.	G	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP4-724E13.2|antisense|NON_CODING|ENST00000420449|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:0:0:0:0,0:0,0:33,33:0,0	99:0:0:0:0,0:0,0:94,94:5,5
7	51696818	.	G	T	.	PASS	NT=ref;QSS=24;QSS_NT=24;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP4-718N17.2|lincRNA|NON_CODING|ENST00000414409|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	41:0:0:0:0,0:0,0:41,41:0,0	117:1:0:0:0,0:0,0:99,100:17,18
7	51902756	.	T	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:0:0:0:0,0:0,0:0,0:29,31	102:0:0:0:0,0:0,0:10,10:92,94
7	52176642	.	T	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	42:9:0:0:0,0:0,1:0,0:33,42	90:27:0:0:0,0:4,7:0,0:59,83
7	52299301	.	G	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:1:0:0:0,0:0,0:36,37:0,0	82:1:0:0:0,0:0,0:76,77:5,5
7	52325649	.	T	C	.	PASS	NT=ref;QSS=26;QSS_NT=26;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	51:0:0:0:0,0:0,0:0,0:51,51	105:1:0:0:0,0:11,11:0,0:93,95
7	52335372	.	A	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||SNORA31|snoRNA|NON_CODING|ENST00000517219||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	27:0:0:0:27,29:0,0:0,0:0,0	78:0:0:0:73,81:0,0:0,0:5,5
7	52439029	.	T	C	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	43:1:0:0:0,0:0,0:0,0:42,43	123:0:0:0:1,1:5,5:0,0:117,117
7	52757422	.	A	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:0:0:0:31,31:0,0:0,0:0,0	112:3:0:0:99,101:0,0:10,11:0,0
7	55363535	.	C	G	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	47:0:0:0:0,0:46,48:1,1:0,0	84:1:0:0:0,0:75,78:8,8:0,0
7	55804863	rs191384611	T	C	.	PASS	NT=ref;QSS=27;QSS_NT=27;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||SUMO2P3|processed_pseudogene|NON_CODING|ENST00000438311||1),EXON(MODIFIER|||||CICP11|processed_pseudogene|NON_CODING|ENST00000434745|1|1);RSPOS=55804863;dbSNPBuildID=135;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	57:0:0:0:0,0:0,0:0,0:57,58	101:1:0:0:0,0:6,7:3,3:91,92
7	55804913	rs78081154	T	C	.	PASS	NT=ref;QSS=23;QSS_NT=23;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||SUMO2P3|processed_pseudogene|NON_CODING|ENST00000438311||1),EXON(MODIFIER|||||CICP11|processed_pseudogene|NON_CODING|ENST00000434745|1|1);RSPOS=55804913;dbSNPBuildID=131;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	47:0:0:0:0,0:0,0:0,0:47,48	115:1:0:0:0,0:6,6:0,0:108,109
7	55809618	.	T	C	.	PASS	NT=ref;QSS=30;QSS_NT=30;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||CICP11|processed_pseudogene|NON_CODING|ENST00000434745||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	68:4:0:0:0,0:0,0:4,5:60,64	100:6:0:0:0,0:8,11:3,4:83,86
7	55948006	.	T	C	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||RP11-419M24.4|processed_pseudogene|NON_CODING|ENST00000452998||1),INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||RP11-419M24.5|processed_pseudogene|NON_CODING|ENST00000420654||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	43:0:0:0:0,0:0,0:0,0:43,43	84:4:0:0:0,0:8,9:0,0:72,79
7	56219117	.	C	G	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	50:8:0:0:0,0:42,75:0,1:0,0	90:11:0:0:0,0:72,127:7,9:0,0
7	56735139	.	T	C	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:0:0:0:0,0:0,0:0,0:38,38	98:1:0:0:0,0:7,7:0,0:90,91
7	56860883	.	T	C	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:0:0:0:0,0:0,0:0,0:34,34	93:0:0:0:0,0:10,15:1,1:82,87
7	57629589	rs74415311	A	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=57629589;dbSNPBuildID=131;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	49:0:0:0:49,53:0,0:0,1:0,0	130:1:0:0:114,136:0,0:15,19:0,0
7	57643414	.	T	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	50:0:0:0:0,1:0,0:0,0:50,51	98:3:0:0:5,12:0,0:0,0:90,92
7	57643417	.	C	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->AC;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	48:0:0:0:0,1:48,49:0,0:0,0	99:3:0:0:5,13:91,93:0,0:0,0
7	57644994	rs79452931	A	G	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=57644994;dbSNPBuildID=131;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	41:0:0:0:40,40:1,1:0,0:0,0	96:0:0:0:91,91:0,0:5,11:0,0
7	57647321	rs113848665	A	C	.	PASS	NT=ref;QSS=37;QSS_NT=37;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=57647321;dbSNPBuildID=132;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	77:2:0:0:75,87:0,0:0,0:0,1	266:7:0:0:248,289:10,13:1,2:0,0
7	57700491	.	C	G	.	PASS	NT=ref;QSS=28;QSS_NT=28;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||RP11-368M16.4|processed_pseudogene|NON_CODING|ENST00000436076||1),INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||RP11-368M16.3|unprocessed_pseudogene|NON_CODING|ENST00000511350||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	57:0:0:0:0,0:57,58:0,0:0,0	143:6:0:0:0,0:130,142:7,11:0,0
7	57700495	.	C	T	.	PASS	NT=ref;QSS=27;QSS_NT=27;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||RP11-368M16.4|processed_pseudogene|NON_CODING|ENST00000436076||1),INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||RP11-368M16.3|unprocessed_pseudogene|NON_CODING|ENST00000511350||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	56:1:0:0:0,0:55,57:0,0:0,0	143:7:0:0:0,0:129,143:0,0:7,11
7	57727504	rs147753073	C	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=57727504;dbSNPBuildID=134;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	112:0:0:0:0,0:111,111:0,0:1,3	227:1:0:0:0,0:206,207:0,0:20,31
7	57728850	.	A	G	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	46:1:0:0:45,47:0,0:0,0:0,0	104:3:0:0:94,96:0,1:6,9:1,1
7	57729429	.	C	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	79:0:0:0:0,1:79,79:0,0:0,0	176:1:0:0:7,10:167,180:0,0:1,1
7	57737780	.	A	T	.	PASS	NT=ref;QSS=24;QSS_NT=24;SGT=AA->AT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	70:1:0:0:69,73:0,0:0,0:0,1	158:1:0:0:150,154:0,0:0,0:7,7
7	57755497	.	T	G	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	50:0:0:0:0,0:0,0:0,0:50,51	101:9:0:0:0,0:0,0:6,16:86,86
7	57767739	.	C	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:0:0:0:0,0:32,32:0,0:0,1	107:0:0:0:0,0:99,99:0,0:8,10
7	57796438	.	T	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:1:0:0:0,0:0,0:0,0:31,33	110:2:0:0:0,0:0,0:6,11:102,106
7	57796547	rs199980567	A	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=57796547;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:0:0:0:31,33:0,0:0,0:0,0	117:0:0:0:110,112:0,0:0,0:7,11
7	57797649	.	T	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=TT->AT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:0:0:0:0,1:0,0:0,0:37,38	112:0:0:0:9,12:0,0:0,0:103,103
7	57807911	.	G	C	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:2:0:0:0,0:0,0:35,38:0,0	101:5:0:0:0,0:8,10:88,93:0,0
7	57814926	rs78994229	G	C	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=57814926;dbSNPBuildID=131;SSR=0;SAO=0;VP=05010000000500010e000100;WGT=1;VC=SNV;SLO;ASP;GNO;KGPilot123;KGPROD;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	43:0:0:0:0,0:0,0:43,43:0,0	116:1:0:0:0,0:7,10:108,109:0,0
7	57822134	rs201436613	C	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->CG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=57822134;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:0:0:0:0,0:35,36:0,1:0,0	111:8:0:0:0,0:96,97:7,21:0,0
7	57857352	.	G	T	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	41:0:0:0:0,0:0,0:41,41:0,0	110:0:0:0:0,0:0,0:102,103:8,8
7	57871922	.	C	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:2:0:0:0,0:32,33:0,0:0,0	113:2:0:0:0,0:103,104:1,1:7,10
7	57871923	.	A	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:1:0:0:32,33:0,0:0,0:0,0	112:2:0:0:103,104:0,0:0,0:7,9
7	57896550	.	A	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-548K12.12|unprocessed_pseudogene|NON_CODING|ENST00000430646|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	28:0:0:0:28,35:0,0:0,0:0,0	97:1:0:0:85,111:0,0:11,14:0,0
7	57913784	.	A	G	.	PASS	NT=ref;QSS=23;QSS_NT=23;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	48:0:0:0:48,55:0,0:0,0:0,0	183:3:0:0:170,182:0,1:10,17:0,0
7	57914769	.	G	A	.	PASS	NT=ref;QSS=32;QSS_NT=32;SGT=GG->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	74:1:0:0:0,1:0,0:73,83:0,0	306:7:0:0:19,23:0,0:280,328:0,1
7	57914775	.	C	T	.	PASS	NT=ref;QSS=32;QSS_NT=32;SGT=CC->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	75:0:0:0:1,1:74,84:0,0:0,1	301:2:0:0:1,1:278,320:0,0:20,24
7	57921271	.	C	A	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=CC->AC;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	51:1:0:0:0,1:50,69:0,0:0,2	160:3:0:0:8,15:145,185:0,1:4,8
7	57922500	.	A	G	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	71:0:0:0:70,86:0,0:1,3:0,0	204:2:0:0:192,234:0,0:10,13:0,0
7	57947793	.	C	T	.	PASS	NT=ref;QSS=36;QSS_NT=36;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	96:23:0:0:0,0:73,135:0,2:0,0	246:66:0:0:0,1:171,345:0,2:9,14
7	57983980	.	G	C	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=GG->CG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	48:7:0:0:0,0:0,4:40,86:1,1	183:37:0:0:0,0:13,29:132,304:1,8
7	57983994	.	T	G	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=TT->GT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	47:1:0:0:0,0:0,0:0,4:46,85	190:10:0:0:0,0:0,0:13,29:167,307
7	58015799	.	G	A	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	44:0:0:0:0,0:0,0:44,47:0,0	114:2:0:0:7,8:0,0:105,111:0,0
7	58020807	.	T	C	.	PASS	NT=ref;QSS=27;QSS_NT=27;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	68:12:0:0:0,0:0,3:1,3:55,101	153:25:0:0:0,3:8,13:0,1:120,254
7	58033855	.	G	T	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=GG->GT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	61:5:0:0:1,2:0,0:55,108:0,5	144:12:0:0:5,9:0,3:119,259:8,23
7	58035284	.	A	T	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=AA->AT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	83:16:0:0:67,159:0,0:0,1:0,4	231:45:0:0:179,444:0,1:0,2:7,16
7	58040136	.	A	G	.	PASS	NT=ref;QSS=24;QSS_NT=24;SGT=AA->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	77:7:0:0:67,163:1,2:1,6:1,11	180:20:0:0:150,380:1,4:9,37:0,16
7	58052465	rs139088482	T	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->AT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=58052465;dbSNPBuildID=134;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	53:14:0:0:0,5:0,1:0,1:39,107	187:27:0:0:6,16:0,0:0,0:154,261
7	61058911	.	T	C	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	46:0:0:0:0,0:0,0:2,4:44,49	123:1:0:0:0,0:11,13:4,8:107,116
7	61058921	.	T	G	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	48:0:0:0:0,0:0,0:0,0:48,54	125:3:0:0:0,0:0,0:10,13:112,127
7	61061140	.	T	C	.	PASS	NT=ref;QSS=23;QSS_NT=23;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	63:0:0:0:0,0:0,0:0,0:63,84	146:1:0:0:0,0:7,10:1,1:137,188
7	61066017	rs202046367	G	C	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=61066017;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:0:0:0:0,0:0,1:39,44:0,0	124:0:0:0:0,0:12,18:112,116:0,0
7	61069069	.	A	C	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:1:0:0:39,49:0,0:0,0:0,0	121:1:0:0:111,136:9,10:0,0:0,0
7	61073245	.	A	G	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=AA->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	70:1:0:0:69,90:0,0:0,2:0,0	200:6:0:0:185,218:0,0:9,17:0,0
7	61078067	.	C	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	77:0:0:0:0,0:77,84:0,0:0,0	137:2:0:0:0,0:129,156:0,0:6,8
7	61078603	.	T	A	.	PASS	NT=ref;QSS=29;QSS_NT=29;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	61:3:0:0:0,0:0,0:0,0:58,100	208:7:0:0:7,14:0,0:0,0:194,341
7	61084890	.	T	A	.	PASS	NT=ref;QSS=23;QSS_NT=23;SGT=TT->AT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	82:18:0:0:0,2:0,0:1,1:63,116	204:23:0:0:16,34:0,0:0,0:165,238
7	61084919	.	T	A	.	PASS	NT=ref;QSS=27;QSS_NT=27;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	67:13:0:0:0,2:0,0:0,0:54,94	167:14:0:0:12,18:0,0:0,2:141,211
7	61392351	.	C	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:5:0:0:0,0:28,41:0,0:0,0	83:3:0:0:0,1:74,79:0,0:6,7
7	61402119	.	G	A	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:3:0:0:0,0:0,0:35,77:0,0	144:18:0:0:9,17:0,4:115,212:2,2
7	61516201	.	C	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	65:17:0:0:0,0:48,89:0,7:0,3	172:43:0:0:0,1:122,226:0,7:7,12
7	61674229	.	T	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->AT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:2:0:0:0,1:0,0:0,1:36,47	130:2:0:0:11,15:0,0:0,1:117,130
7	61674256	.	G	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->CG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:0:0:0:0,0:0,1:39,49:0,0	144:2:1:0:0,0:11,15:130,144:1,1
7	61753795	.	G	A	.	PASS	NT=ref;QSS=27;QSS_NT=27;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	64:9:0:0:0,1:0,0:55,96:0,3	149:18:0:0:8,8:0,0:123,198:0,7
7	61764664	.	C	T	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:0:0:0:0,0:40,40:0,0:0,0	127:1:0:0:0,0:118,119:0,0:8,11
7	61765307	.	G	T	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	79:0:0:0:0,0:0,0:78,115:1,1	253:1:0:0:0,0:0,0:243,323:9,13
7	61769715	rs113321037	C	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=61769715;dbSNPBuildID=132;SSR=0;SAO=0;VP=050100000001000502000100;WGT=1;VC=SNV;SLO;HD;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:1:0:0:0,0:35,37:0,0:0,0	101:2:0:0:1,1:91,93:0,0:7,12
7	61827924	.	C	T	.	PASS	NT=ref;QSS=28;QSS_NT=28;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	95:3:0:0:0,0:92,117:0,0:0,1	238:8:0:0:0,1:217,278:0,0:13,17
7	61829212	.	C	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	45:0:0:0:1,1:44,52:0,0:0,0	133:1:0:0:0,0:126,140:0,0:6,6
7	61832253	.	C	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	111:3:0:0:0,0:107,137:0,1:1,2	326:7:0:0:0,0:304,398:1,1:14,19
7	61835451	.	G	A	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	51:0:0:0:1,2:0,0:50,65:0,0	150:1:0:0:11,12:0,0:138,189:0,0
7	61837866	rs149294589	G	T	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=61837866;dbSNPBuildID=134;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:1:0:0:0,0:0,0:39,46:0,0	90:1:0:0:0,0:1,1:81,97:7,8
7	61837888	rs146636358	G	T	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=61837888;dbSNPBuildID=134;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:0:0:0:0,0:0,0:39,45:0,0	92:1:0:0:0,0:0,0:84,101:7,8
7	61842550	.	C	T	.	PASS	NT=ref;QSS=32;QSS_NT=32;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	68:2:0:0:0,0:66,86:0,0:0,0	241:8:0:0:0,1:222,278:0,0:11,16
7	61845239	rs113409604	T	C	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=TT->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=61845239;dbSNPBuildID=132;SSR=0;SAO=0;VP=050000000001000002000100;WGT=1;VC=SNV;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	45:0:0:0:1,1:0,1:0,0:44,46	121:0:0:0:0,0:8,10:0,0:113,119
7	61894532	rs200100005	T	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->AT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=61894532;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:0:0:0:0,0:0,0:0,0:33,33	88:2:0:0:6,6:0,0:0,0:80,83
7	61971021	.	C	A	.	PASS	NT=ref;QSS=32;QSS_NT=32;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	94:14:0:0:0,1:80,118:0,0:0,0	160:29:0:0:6,11:125,235:0,0:0,0
7	61976297	.	A	G	.	PASS	NT=ref;QSS=41;QSS_NT=41;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	97:12:0:0:85,219:0,0:0,5:0,1	284:24:0:0:244,545:1,2:15,37:0,3
7	62028919	.	A	T	.	PASS	NT=ref;QSS=21;QSS_NT=18;SGT=AA->AT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	90:30:2:0:59,193:1,12:0,1:0,11	211:42:6:0:162,437:0,16:0,0:7,29
7	62029567	.	A	T	.	PASS	NT=ref;QSS=27;QSS_NT=27;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	77:8:0:0:67,126:1,1:1,3:0,4	231:52:0:0:168,363:0,1:1,10:10,23
7	62029573	.	T	C	.	PASS	NT=ref;QSS=23;QSS_NT=23;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	87:2:0:0:0,2:1,6:1,2:83,146	245:22:0:0:0,1:19,41:3,6:201,395
7	62041031	.	G	A	.	PASS	NT=ref;QSS=38;QSS_NT=38;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	94:16:0:0:0,0:0,0:78,189:0,0	199:40:0:0:8,19:0,0:150,385:1,1
7	62047499	.	G	A	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:2:0:0:0,0:0,0:37,49:0,0	118:9:0:0:8,10:0,0:101,118:0,0
7	62133818	.	A	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=AA->AT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	47:0:0:0:47,47:0,0:0,0:0,0	122:2:0:0:115,117:0,0:0,0:5,5
7	62203353	.	A	G	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:1:0:0:36,38:0,0:0,0:0,0	108:0:0:0:102,102:0,0:6,6:0,0
7	62208045	.	A	G	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:0:0:0:35,37:0,0:0,0:0,0	92:1:0:0:85,90:0,0:6,8:0,1
7	62388973	.	C	T	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	49:1:0:0:0,0:48,49:0,0:0,0	123:0:0:0:1,1:113,114:1,1:8,8
7	62627898	.	A	G	.	PASS	NT=ref;QSS=27;QSS_NT=27;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	55:0:0:0:55,55:0,0:0,0:0,0	97:1:0:0:89,90:0,0:7,7:0,0
7	62698756	.	T	G	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||SEPT7P4|unprocessed_pseudogene|NON_CODING|ENST00000437076||1),INTRON(MODIFIER|||||RP5-905H7.3|processed_transcript|NON_CODING|ENST00000451381|1|1),UPSTREAM(MODIFIER|||||PHKG1P1|unprocessed_pseudogene|NON_CODING|ENST00000442924||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:0:0:0:0,0:0,0:0,0:36,38	114:0:0:0:0,0:0,0:8,8:106,108
7	63219299	.	G	A	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=GG->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	66:4:0:0:0,3:0,0:61,85:1,1	145:6:0:0:10,13:2,2:126,162:1,1
7	64570951	.	T	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	46:5:0:0:0,0:0,1:0,0:41,50	151:15:0:0:0,0:6,16:0,0:130,159
7	64572009	.	C	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->AC;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	45:0:0:0:0,1:45,59:0,0:0,0	176:2:0:0:7,12:166,213:0,0:1,1
7	64572071	.	A	G	.	PASS	NT=ref;QSS=27;QSS_NT=27;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	55:0:0:0:55,75:0,0:0,0:0,0	201:0:0:0:182,237:0,0:19,26:0,0
7	64604450	rs201996171	C	T	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||INTS4L1|processed_transcript|NON_CODING|ENST00000587624|1|1),INTRON(MODIFIER|||||INTS4L1|transcribed_unprocessed_pseudogene|NON_CODING|ENST00000438455|1|1),INTRON(MODIFIER|||||INTS4L1|unprocessed_pseudogene|NON_CODING|ENST00000297235|1|1);RSPOS=64604450;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000080005000002000100;WGT=1;VC=SNV;INT;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	41:0:0:0:0,0:41,67:0,0:0,1	118:0:0:0:1,1:110,159:0,0:7,10
7	64607919	.	A	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||INTS4L1|processed_transcript|NON_CODING|ENST00000587624|1|1),INTRON(MODIFIER|||||INTS4L1|transcribed_unprocessed_pseudogene|NON_CODING|ENST00000438455|1|1),INTRON(MODIFIER|||||INTS4L1|unprocessed_pseudogene|NON_CODING|ENST00000297235|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	27:0:0:0:27,29:0,0:0,0:0,0	74:1:0:0:63,70:0,0:0,0:10,11
7	64823701	.	A	G	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||RP11-746P2.3|processed_pseudogene|NON_CODING|ENST00000447960||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	47:0:0:0:46,47:0,0:1,1:0,0	114:3:0:0:101,106:2,4:8,8:0,0
7	64895119	.	A	G	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	51:7:0:0:44,51:0,0:0,0:0,0	120:5:0:0:109,114:0,0:6,7:0,0
7	64962628	.	A	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=AA->AT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	51:2:0:0:49,54:0,0:0,0:0,1	128:2:0:0:120,135:0,0:0,0:6,7
7	64966678	.	C	G	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	41:0:0:0:0,0:41,57:0,0:0,0	123:0:0:0:0,0:114,153:9,13:0,0
7	65057076	.	C	T	.	PASS	NT=ref;QSS=29;QSS_NT=29;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	76:0:0:0:0,0:75,87:0,0:1,1	195:2:0:0:1,1:182,217:1,1:9,12
7	65060622	.	C	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	47:0:0:0:0,0:47,70:0,0:0,3	117:3:0:0:0,0:106,138:1,1:7,18
7	65717093	.	A	G	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||370|TPST1|protein_coding|CODING|ENST00000304842|2|1),INTRON(MODIFIER|||||TPST1|processed_transcript|CODING|ENST00000480281|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:0:0:0:38,38:0,0:0,0:0,0	110:1:0:0:100,102:1,1:7,10:1,1
7	67355339	.	A	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=AA->AC;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	54:4:0:0:50,52:0,2:0,0:0,0	93:12:0:0:69,73:11,19:1,3:0,0
7	67795648	.	C	G	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	42:0:0:0:0,0:42,42:0,0:0,0	97:0:0:0:0,0:86,86:11,11:0,0
7	68048734	.	C	G	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=CC->CG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	55:0:0:0:0,0:55,55:0,0:0,0	86:1:0:0:0,0:81,82:4,4:0,0
7	68766437	.	G	C	.	PASS	NT=ref;QSS=25;QSS_NT=25;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-3P22.2|lincRNA|NON_CODING|ENST00000435148|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	49:0:0:0:0,0:0,0:49,50:0,0	96:1:0:0:0,0:8,9:87,87:0,0
7	69573144	.	C	A	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1235|AUTS2|protein_coding|CODING|ENST00000406775|2|1),INTRON(MODIFIER||||1259|AUTS2|protein_coding|CODING|ENST00000342771|2|1),INTRON(MODIFIER||||266|AUTS2|protein_coding|CODING|ENST00000403018|2|1),INTRON(MODIFIER|||||AUTS2|processed_transcript|CODING|ENST00000476695|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:0:0:0:0,0:36,36:0,0:0,0	101:2:0:0:8,8:91,93:0,0:0,0
7	69686203	.	T	C	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1235|AUTS2|protein_coding|CODING|ENST00000406775|4|1),INTRON(MODIFIER||||1259|AUTS2|protein_coding|CODING|ENST00000342771|4|1),INTRON(MODIFIER||||266|AUTS2|protein_coding|CODING|ENST00000403018|4|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	42:0:0:0:0,0:0,0:0,0:42,42	104:1:0:0:0,0:8,8:1,1:94,95
7	69999807	.	G	A	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1235|AUTS2|protein_coding|CODING|ENST00000406775|5|1),INTRON(MODIFIER||||1259|AUTS2|protein_coding|CODING|ENST00000342771|5|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:0:0:0:0,0:0,0:39,39:0,0	93:0:0:0:5,5:0,0:88,88:0,0
7	70260714	.	T	G	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||1235|AUTS2|protein_coding|CODING|ENST00000406775||1),DOWNSTREAM(MODIFIER||||1259|AUTS2|protein_coding|CODING|ENST00000342771||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	56:1:0:0:0,0:1,1:1,1:53,56	116:4:0:0:0,0:0,0:7,9:105,108
7	70601753	.	A	G	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||598|WBSCR17|protein_coding|CODING|ENST00000333538|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	47:1:0:0:46,49:0,0:0,0:0,0	92:3:0:0:84,86:0,0:5,7:0,0
7	70788475	.	C	T	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||187|WBSCR17|protein_coding|CODING|ENST00000447516|1|1),INTRON(MODIFIER||||598|WBSCR17|protein_coding|CODING|ENST00000333538|1|1),INTRON(MODIFIER|||||WBSCR17|processed_transcript|CODING|ENST00000467723|1|1),INTRON(MODIFIER|||||WBSCR17|processed_transcript|CODING|ENST00000498380|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:0:0:0:0,0:37,37:0,0:0,0	102:0:0:0:0,0:96,96:0,0:6,6
7	71039565	.	T	C	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||598|WBSCR17|protein_coding|CODING|ENST00000333538|6|1),INTRON(MODIFIER|||||WBSCR17|processed_transcript|CODING|ENST00000467723|6|1),INTRON(MODIFIER|||||WBSCR17|processed_transcript|CODING|ENST00000498380|6|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:0:0:0:0,0:0,0:0,0:37,37	106:1:0:0:0,0:9,9:0,0:96,98
7	71408001	.	C	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||GS1-111G14.1|processed_pseudogene|NON_CODING|ENST00000455206||1),INTRON(MODIFIER||||219|CALN1|protein_coding|CODING|ENST00000329008|4|1),INTRON(MODIFIER||||219|CALN1|protein_coding|CODING|ENST00000395276|5|1),INTRON(MODIFIER||||219|CALN1|protein_coding|CODING|ENST00000405452|3|1),INTRON(MODIFIER||||219|CALN1|protein_coding|CODING|ENST00000431984|4|1),INTRON(MODIFIER||||261|CALN1|protein_coding|CODING|ENST00000395275|5|1),INTRON(MODIFIER||||261|CALN1|protein_coding|CODING|ENST00000412588|4|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:1:0:0:0,0:28,29:0,0:0,0	100:2:0:0:0,1:94,95:0,0:4,4
7	72264388	.	C	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||TYW1B|processed_transcript|NON_CODING|ENST00000437915|5|1),INTRON(MODIFIER|||||TYW1B|processed_transcript|NON_CODING|ENST00000438125|4|1),INTRON(MODIFIER|||||TYW1B|transcribed_unprocessed_pseudogene|NON_CODING|ENST00000435769|6|1),INTRON(MODIFIER|||||TYW1B|unprocessed_pseudogene|NON_CODING|ENST00000438904|6|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:2:0:0:0,0:30,32:0,0:0,0	95:0:0:0:0,0:88,91:0,0:7,8
7	72709399	.	C	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=EXON(MODIFIER|||||POM121B|unprocessed_pseudogene|NON_CODING|ENST00000380760|4|1),UPSTREAM(MODIFIER|||||POM121B|unprocessed_pseudogene|NON_CODING|ENST00000411631||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:0:0:0:0,0:34,35:0,0:0,0	42:1:0:0:0,0:36,38:0,0:5,5
7	72772924	.	G	A	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||297|FKBP6|protein_coding|CODING|ENST00000413573||1),DOWNSTREAM(MODIFIER||||322|FKBP6|protein_coding|CODING|ENST00000431982||1),DOWNSTREAM(MODIFIER||||327|FKBP6|protein_coding|CODING|ENST00000252037||1),DOWNSTREAM(MODIFIER|||||FKBP6|nonsense_mediated_decay|CODING|ENST00000445032||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	44:0:0:0:0,0:0,0:44,44:0,0	113:8:0:0:11,12:4,6:90,95:0,0
7	73616865	.	C	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||57|LAT2|protein_coding|CODING|ENST00000465116|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:0:0:0:0,0:34,35:0,0:0,0	94:0:0:0:0,0:89,91:0,0:5,5
7	73616867	.	G	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||57|LAT2|protein_coding|CODING|ENST00000465116|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:0:0:0:0,0:0,0:35,36:0,0	93:0:0:0:4,4:0,0:89,91:0,0
7	73616874	.	G	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||57|LAT2|protein_coding|CODING|ENST00000465116|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:0:0:0:0,0:0,0:36,37:0,0	87:0:0:0:0,0:0,0:82,84:5,5
7	75532847	.	A	G	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER||||139|POR|protein_coding|CODING|ENST00000453773|1|1),UPSTREAM(MODIFIER||||187|POR|protein_coding|CODING|ENST00000439963||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:3:0:0:37,40:0,0:0,1:0,0	89:9:0:0:75,82:0,0:5,8:0,0
7	75540672	.	A	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||139|POR|protein_coding|CODING|ENST00000453773|1|1),INTRON(MODIFIER||||187|POR|protein_coding|CODING|ENST00000439963|1|1),UPSTREAM(MODIFIER||||145|POR|protein_coding|CODING|ENST00000412521||1),UPSTREAM(MODIFIER||||171|POR|protein_coding|CODING|ENST00000414186||1),UPSTREAM(MODIFIER||||368|POR|protein_coding|CODING|ENST00000419840||1),UPSTREAM(MODIFIER||||38|POR|protein_coding|CODING|ENST00000421059||1),UPSTREAM(MODIFIER||||633|POR|protein_coding|CODING|ENST00000394893||1),UPSTREAM(MODIFIER||||680|POR|protein_coding|CODING|ENST00000461988||1),UPSTREAM(MODIFIER|||||MIR4651|miRNA|NON_CODING|ENST00000582622||1),UPSTREAM(MODIFIER|||||POR|nonsense_mediated_decay|CODING|ENST00000448410||1),UPSTREAM(MODIFIER|||||POR|retained_intron|CODING|ENST00000471238||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	53:0:0:0:52,52:1,1:0,0:0,0	108:2:0:0:95,95:9,11:1,1:1,1
7	75581390	rs112369023	T	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||139|POR|protein_coding|CODING|ENST00000453773|1|1),INTRON(MODIFIER||||145|POR|protein_coding|CODING|ENST00000412521|2|1),INTRON(MODIFIER||||165|POR|protein_coding|CODING|ENST00000432753|1|1),INTRON(MODIFIER||||171|POR|protein_coding|CODING|ENST00000414186|1|1),INTRON(MODIFIER||||187|POR|protein_coding|CODING|ENST00000439963|1|1),INTRON(MODIFIER||||368|POR|protein_coding|CODING|ENST00000419840|1|1),INTRON(MODIFIER||||38|POR|protein_coding|CODING|ENST00000421059|1|1),INTRON(MODIFIER||||61|POR|protein_coding|CODING|ENST00000418341|2|1),INTRON(MODIFIER||||61|POR|protein_coding|CODING|ENST00000449920|1|1),INTRON(MODIFIER||||633|POR|protein_coding|CODING|ENST00000394893|1|1),INTRON(MODIFIER||||680|POR|protein_coding|CODING|ENST00000461988|1|1),INTRON(MODIFIER|||||POR|nonsense_mediated_decay|CODING|ENST00000448410|1|1),INTRON(MODIFIER|||||POR|retained_intron|CODING|ENST00000471238|1|1),UPSTREAM(MODIFIER|||||POR|nonsense_mediated_decay|CODING|ENST00000412064||1),UPSTREAM(MODIFIER|||||POR|nonsense_mediated_decay|CODING|ENST00000454934||1);RSPOS=75581390;dbSNPBuildID=132;SSR=0;SAO=0;VP=050000080001000102000100;GENEINFO=POR:5447;WGT=1;VC=SNV;INT;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:1:0:0:0,0:0,0:2,2:32,40	85:6:0:0:0,0:7,13:3,4:69,80
7	76122966	rs139178815	A	G	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||531|DTX2|protein_coding|CODING|ENST00000446600|4|1),INTRON(MODIFIER||||575|DTX2|protein_coding|CODING|ENST00000307569|6|1),INTRON(MODIFIER||||575|DTX2|protein_coding|CODING|ENST00000446820|3|1),INTRON(MODIFIER||||622|DTX2|protein_coding|CODING|ENST00000324432|6|1),INTRON(MODIFIER||||622|DTX2|protein_coding|CODING|ENST00000413936|4|1),INTRON(MODIFIER||||622|DTX2|protein_coding|CODING|ENST00000430490|5|1),INTRON(MODIFIER|||||DTX2|retained_intron|CODING|ENST00000467729|1|1);RSPOS=76122966;dbSNPBuildID=134;SSR=0;SAO=0;VP=050000080005000002000100;GENEINFO=DTX2:113878;WGT=1;VC=SNV;INT;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:0:0:0:32,32:0,0:0,0:0,0	65:1:0:0:54,55:0,0:10,11:0,0
7	76626513	.	G	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||276|UPK3B|protein_coding|CODING|ENST00000443097|7|1),INTRON(MODIFIER||||320|UPK3B|protein_coding|CODING|ENST00000419923|5|1),INTRON(MODIFIER|||||DTX2P1-UPK3BP1-PMS2P11|processed_transcript|NON_CODING|ENST00000579700|2|1),INTRON(MODIFIER|||||DTX2P1-UPK3BP1-PMS2P11|processed_transcript|NON_CODING|ENST00000584900|2|1),INTRON(MODIFIER|||||DTX2P1|transcribed_unprocessed_pseudogene|NON_CODING|ENST00000425797|4|1),INTRON(MODIFIER|||||DTX2P1|unprocessed_pseudogene|NON_CODING|ENST00000162863|2|1),INTRON(MODIFIER|||||DTX2P1|unprocessed_pseudogene|NON_CODING|ENST00000440837|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:4:1:0:0,1:0,0:31,60:0,0	93:14:1:0:7,12:0,0:72,115:0,0
7	78223449	.	C	A	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1283|MAGI2|protein_coding|CODING|ENST00000522391|3|1),INTRON(MODIFIER||||1441|MAGI2|protein_coding|CODING|ENST00000419488|3|1),INTRON(MODIFIER||||1455|MAGI2|protein_coding|CODING|ENST00000354212|3|1),INTRON(MODIFIER||||550|MAGI2|protein_coding|CODING|ENST00000536571|2|1),INTRON(MODIFIER||||555|MAGI2|protein_coding|CODING|ENST00000535697|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:0:0:0:0,0:33,33:0,0:0,0	104:0:0:0:13,13:90,90:0,0:1,1
7	78426130	.	C	G	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1283|MAGI2|protein_coding|CODING|ENST00000522391|2|1),INTRON(MODIFIER||||1441|MAGI2|protein_coding|CODING|ENST00000419488|2|1),INTRON(MODIFIER||||1455|MAGI2|protein_coding|CODING|ENST00000354212|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:0:0:0:0,0:35,35:0,0:0,0	117:0:0:0:0,0:106,107:11,11:0,0
7	80099943	.	C	A	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||354|GNAT3|protein_coding|CODING|ENST00000398291|5|1),INTRON(MODIFIER||||472|CD36|protein_coding|CODING|ENST00000435819|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	46:1:0:0:0,0:45,46:0,0:0,0	105:1:0:0:4,5:100,100:0,0:0,0
7	83240100	.	G	T	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||162|SEMA3E|protein_coding|CODING|ENST00000442159|1|1),INTRON(MODIFIER||||715|SEMA3E|protein_coding|CODING|ENST00000427262|1|1),INTRON(MODIFIER||||775|SEMA3E|protein_coding|CODING|ENST00000307792|1|1),INTRON(MODIFIER|||||SEMA3E|nonsense_mediated_decay|CODING|ENST00000453333|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:0:0:0:0,0:0,0:36,36:0,0	88:0:0:0:0,0:0,0:79,79:9,9
7	83353097	.	G	C	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	44:0:0:0:0,0:0,0:44,44:0,0	109:0:0:0:1,1:9,9:99,99:0,0
7	83448940	.	G	A	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	43:0:0:0:0,0:0,0:43,43:0,0	106:1:0:0:9,9:0,1:96,96:0,0
7	84283771	.	T	C	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:2:0:0:0,0:0,0:0,0:37,38	87:0:0:0:0,0:7,7:0,0:80,80
7	85418719	.	C	A	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:0:0:0:0,0:36,36:0,0:0,0	118:3:0:0:13,13:102,105:0,0:0,0
7	85969675	.	C	A	.	PASS	NT=ref;QSS=23;QSS_NT=23;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	45:0:0:0:0,0:45,45:0,0:0,0	103:1:0:0:7,7:95,96:0,0:0,0
7	85970796	.	A	G	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:0:0:0:39,39:0,0:0,0:0,0	101:2:0:0:93,95:0,0:5,5:1,1
7	88984576	.	A	G	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:0:0:0:37,37:0,0:0,0:0,0	86:0:0:0:80,80:1,1:5,5:0,0
7	89127717	.	T	C	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||AC002383.2|lincRNA|NON_CODING|ENST00000448260||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	42:1:0:0:0,0:0,0:0,0:41,42	103:2:0:0:0,0:13,14:0,0:88,89
7	90289151	.	T	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||126|CDK14|protein_coding|CODING|ENST00000430760|3|1),INTRON(MODIFIER||||126|CDK14|protein_coding|CODING|ENST00000446224|2|1),INTRON(MODIFIER||||126|CDK14|protein_coding|CODING|ENST00000449528|5|1),INTRON(MODIFIER||||126|CDK14|protein_coding|CODING|ENST00000456689|3|1),INTRON(MODIFIER||||469|CDK14|protein_coding|CODING|ENST00000380050|2|1),INTRON(MODIFIER|||||CDK14|processed_transcript|CODING|ENST00000484035|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:2:0:0:0,0:0,0:0,0:33,35	78:1:0:0:1,1:5,5:0,0:71,72
7	97356006	.	T	C	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	45:1:0:0:0,0:0,0:0,0:44,45	118:0:0:0:0,0:9,9:0,0:109,109
7	97389472	.	G	A	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:0:0:0:0,0:0,0:35,35:0,0	84:2:0:0:5,5:0,0:77,79:0,0
7	97567723	.	G	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->CG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=DOWNSTREAM(MODIFIER|||||AC079781.8|processed_pseudogene|NON_CODING|ENST00000449110||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	42:0:0:0:0,0:1,2:41,42:0,0	107:3:0:0:0,0:22,27:82,83:0,0
7	99485436	.	T	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||474|TRIM4|protein_coding|CODING|ENST00000349062||1),DOWNSTREAM(MODIFIER||||500|TRIM4|protein_coding|CODING|ENST00000355947||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	59:0:0:0:0,0:1,1:1,1:57,61	109:5:0:0:0,0:5,8:0,0:99,106
7	100682866	.	C	G	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=EXON(MODIFIER|||||MUC17|nonsense_mediated_decay|CODING|ENST00000379439|3|1),SYNONYMOUS_CODING(LOW|SILENT|gtC/gtG|V2723|4493|MUC17|protein_coding|CODING|ENST00000306151|3|1),UPSTREAM(MODIFIER|||||MUC17|retained_intron|CODING|ENST00000470303||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:0:0:0:0,0:34,34:0,0:0,0	108:0:0:0:0,0:102,102:6,6:0,0
7	100927786	.	T	C	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||AZGP1P2|unprocessed_pseudogene|NON_CODING|ENST00000454506||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	42:0:0:0:1,1:0,0:0,0:41,43	119:8:0:0:0,1:10,14:1,2:100,107
7	101389056	.	C	T	.	PASS	NT=ref;QSS=24;QSS_NT=24;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	49:2:0:0:0,0:47,49:0,0:0,0	105:1:0:0:0,0:97,99:0,0:7,7
7	104081545	.	A	G	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||218|LHFPL3|protein_coding|CODING|ENST00000401970|1|1),INTRON(MODIFIER||||222|LHFPL3|protein_coding|CODING|ENST00000424859|1|1),INTRON(MODIFIER||||232|LHFPL3|protein_coding|CODING|ENST00000543266|1|1),INTRON(MODIFIER||||236|LHFPL3|protein_coding|CODING|ENST00000535008|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:0:0:0:31,31:0,0:0,0:0,0	100:0:0:0:90,90:0,0:9,9:1,1
7	104121326	.	G	T	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||218|LHFPL3|protein_coding|CODING|ENST00000401970|1|1),INTRON(MODIFIER||||222|LHFPL3|protein_coding|CODING|ENST00000424859|1|1),INTRON(MODIFIER||||232|LHFPL3|protein_coding|CODING|ENST00000543266|2|1),INTRON(MODIFIER||||236|LHFPL3|protein_coding|CODING|ENST00000535008|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:0:0:0:0,0:0,0:37,37:0,0	89:1:0:0:0,0:0,0:83,84:5,5
7	105046423	.	A	G	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:1:0:0:36,41:0,0:0,0:0,0	72:1:0:0:61,66:0,1:10,10:0,0
7	106091406	.	G	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||CTB-111H14.1|processed_transcript|NON_CODING|ENST00000490856|4|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	41:0:0:0:0,0:0,0:41,41:0,0	103:1:0:0:4,4:0,0:98,100:0,0
7	106271663	.	C	A	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->AC;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER|||||CTB-111H14.1|processed_transcript|NON_CODING|ENST00000485282|1|1),INTRON(MODIFIER|||||CTB-111H14.1|processed_transcript|NON_CODING|ENST00000490856|1|1),INTRON(MODIFIER|||||CTB-111H14.1|processed_transcript|NON_CODING|ENST00000592441|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	45:2:0:0:0,1:42,52:0,0:1,1	121:10:0:0:13,19:98,118:0,2:0,0
7	106383391	.	A	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||CTB-111H14.1|processed_transcript|NON_CODING|ENST00000592441|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:2:0:0:27,29:0,0:0,0:0,0	98:7:0:0:84,91:7,8:0,0:0,0
7	106624845	.	G	A	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	46:0:0:0:0,0:0,0:46,47:0,0	122:1:0:0:6,7:0,0:115,115:0,0
7	109053931	.	C	G	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	45:1:0:0:1,1:43,44:0,0:0,0	106:0:0:0:0,0:96,96:10,10:0,0
7	109059212	.	G	T	.	PASS	NT=ref;QSS=23;QSS_NT=23;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	46:0:0:0:0,0:0,0:46,47:0,0	115:0:0:0:0,0:0,0:102,102:13,14
7	109059223	.	A	T	.	PASS	NT=ref;QSS=24;QSS_NT=24;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	48:0:0:0:48,49:0,0:0,0:0,0	113:0:0:0:99,100:1,1:0,0:13,14
7	109059244	.	G	C	.	PASS	NT=ref;QSS=24;QSS_NT=24;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	47:0:0:0:0,0:0,0:47,48:0,0	112:0:0:0:0,0:13,14:99,100:0,0
7	109065520	.	A	G	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	45:0:0:0:45,45:0,0:0,0:0,0	103:1:0:0:98,99:0,0:4,4:0,0
7	110625077	.	G	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||110|IMMP2L|protein_coding|CODING|ENST00000437687|2|1),INTRON(MODIFIER||||110|IMMP2L|protein_coding|CODING|ENST00000447215|3|1),INTRON(MODIFIER||||157|IMMP2L|protein_coding|CODING|ENST00000450877|2|1),INTRON(MODIFIER||||175|IMMP2L|protein_coding|CODING|ENST00000331762|4|1),INTRON(MODIFIER||||175|IMMP2L|protein_coding|CODING|ENST00000405709|3|1),INTRON(MODIFIER||||175|IMMP2L|protein_coding|CODING|ENST00000415362|2|1),INTRON(MODIFIER||||175|IMMP2L|protein_coding|CODING|ENST00000452895|4|1),INTRON(MODIFIER|||||IMMP2L|processed_transcript|CODING|ENST00000489381|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:1:0:0:0,0:0,0:28,29:0,0	125:3:0:0:0,0:12,13:110,112:0,0
7	111250057	.	G	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->CG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	46:3:0:0:0,0:0,1:43,47:0,0	106:7:0:0:0,0:15,16:83,93:1,2
7	111566799	.	G	A	.	PASS	NT=ref;QSS=25;QSS_NT=25;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1966|DOCK4|protein_coding|CODING|ENST00000437633|12|1),INTRON(MODIFIER||||1975|DOCK4|protein_coding|CODING|ENST00000428084|12|1),INTRON(MODIFIER|||||DOCK4|processed_transcript|CODING|ENST00000476846|12|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	50:1:0:0:0,0:0,0:49,51:0,0	93:2:0:0:7,8:0,0:84,85:0,0
7	111674014	.	G	A	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1966|DOCK4|protein_coding|CODING|ENST00000437633|1|1),INTRON(MODIFIER||||1975|DOCK4|protein_coding|CODING|ENST00000428084|1|1),INTRON(MODIFIER|||||DOCK4|processed_transcript|CODING|ENST00000476846|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:0:0:0:0,0:0,0:40,40:0,0	95:0:0:0:7,7:0,0:88,88:0,0
7	113588495	.	C	G	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||190|PPP1R3A|protein_coding|CODING|ENST00000449795|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:0:0:0:0,0:37,37:0,0:0,0	74:2:0:0:0,0:63,64:9,10:0,0
7	113927800	.	G	T	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||220|FOXP2|protein_coding|CODING|ENST00000324462|2|1),INTRON(MODIFIER||||382|FOXP2|protein_coding|CODING|ENST00000393500|3|1),INTRON(MODIFIER|||||FOXP2|nonsense_mediated_decay|CODING|ENST00000412402|1|1),INTRON(MODIFIER|||||FOXP2|nonsense_mediated_decay|CODING|ENST00000440349|2|1),INTRON(MODIFIER|||||FOXP2|nonsense_mediated_decay|CODING|ENST00000441290|3|1),INTRON(MODIFIER|||||FOXP2|processed_transcript|CODING|ENST00000495516|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:1:0:0:0,0:0,0:37,38:0,0	110:4:0:0:0,0:0,0:97,101:9,9
7	115474047	.	C	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||Y_RNA|misc_RNA|NON_CODING|ENST00000362354||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:0:0:0:0,0:29,29:0,0:0,0	101:2:0:0:0,0:85,87:1,1:13,13
7	116093368	.	T	G	.	PASS	NT=ref;QSS=25;QSS_NT=25;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||AC002066.1|antisense|NON_CODING|ENST00000413968|2|1),INTRON(MODIFIER|||||AC002066.1|antisense|NON_CODING|ENST00000439070|1|1),INTRON(MODIFIER|||||AC002066.1|antisense|NON_CODING|ENST00000446355|2|1),INTRON(MODIFIER|||||CAV2|processed_transcript|CODING|ENST00000462876|8|1),INTRON(MODIFIER|||||CAV2|processed_transcript|CODING|ENST00000467035|6|1),INTRON(MODIFIER|||||CAV2|processed_transcript|CODING|ENST00000472470|3|1),INTRON(MODIFIER|||||CAV2|processed_transcript|CODING|ENST00000476156|3|1),INTRON(MODIFIER|||||CAV2|processed_transcript|CODING|ENST00000477018|7|1),INTRON(MODIFIER|||||CAV2|processed_transcript|CODING|ENST00000478226|5|1),INTRON(MODIFIER|||||CAV2|processed_transcript|CODING|ENST00000484156|6|1),INTRON(MODIFIER|||||CAV2|processed_transcript|CODING|ENST00000484871|2|1),INTRON(MODIFIER|||||CAV2|processed_transcript|CODING|ENST00000485561|4|1),INTRON(MODIFIER|||||CAV2|processed_transcript|CODING|ENST00000489776|7|1),INTRON(MODIFIER|||||CAV2|processed_transcript|CODING|ENST00000491643|6|1),INTRON(MODIFIER|||||CAV2|processed_transcript|CODING|ENST00000495046|5|1),INTRON(MODIFIER|||||CAV2|processed_transcript|CODING|ENST00000497046|8|1),INTRON(MODIFIER|||||CAV2|processed_transcript|CODING|ENST00000498493|6|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	50:0:0:0:0,0:0,0:0,0:50,51	93:0:0:0:0,0:0,0:9,9:84,84
7	118072212	.	G	T	.	PASS	NT=ref;QSS=31;QSS_NT=31;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	59:0:0:0:0,0:0,0:59,59:0,0	111:1:0:0:0,0:1,1:94,94:15,16
7	118176496	rs182234759	C	T	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=118176496;GMAF=0.0009;dbSNPBuildID=135;SSR=0;SAO=0;VP=050000000005000014000100;WGT=1;VC=SNV;ASP;KGPhase1;KGPROD	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:0:0:0:0,0:39,39:0,0:0,0	113:0:0:0:0,0:103,103:0,0:10,10
7	118495616	.	G	T	.	PASS	NT=ref;QSS=24;QSS_NT=24;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	45:0:0:0:0,0:0,0:45,45:0,0	103:0:0:0:0,0:0,0:89,89:14,14
7	120417139	.	G	C	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	42:0:0:0:0,0:0,0:42,42:0,0	86:2:0:0:1,1:8,8:74,76:1,1
7	120838314	.	G	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1026|CPED1|protein_coding|CODING|ENST00000310396|16|1),INTRON(MODIFIER||||563|CPED1|protein_coding|CODING|ENST00000423795|13|1),INTRON(MODIFIER||||783|CPED1|protein_coding|CODING|ENST00000450913|15|1),INTRON(MODIFIER|||||CPED1|processed_transcript|CODING|ENST00000466055|1|1),UPSTREAM(MODIFIER|||||U6|snRNA|NON_CODING|ENST00000384362||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:0:0:0:0,0:0,0:32,32:0,0	105:0:0:0:0,0:0,0:98,98:7,7
7	120876199	.	G	A	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1026|CPED1|protein_coding|CODING|ENST00000310396|16|1),INTRON(MODIFIER||||563|CPED1|protein_coding|CODING|ENST00000423795|13|1),INTRON(MODIFIER||||783|CPED1|protein_coding|CODING|ENST00000450913|15|1),INTRON(MODIFIER|||||CPED1|processed_transcript|CODING|ENST00000466055|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:0:0:0:0,0:0,0:35,36:0,0	100:0:0:0:6,6:0,0:94,94:0,0
7	121094202	.	C	A	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	49:1:0:0:0,0:48,49:0,0:0,0	97:2:0:0:4,4:91,93:0,1:0,0
7	121208167	.	T	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:0:0:0:0,0:0,0:0,0:37,37	90:0:0:0:0,0:0,0:6,7:84,84
7	121597388	.	T	C	.	PASS	NT=ref;QSS=24;QSS_NT=24;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1448|PTPRZ1|protein_coding|CODING|ENST00000449182|2|1),INTRON(MODIFIER||||2315|PTPRZ1|protein_coding|CODING|ENST00000393386|2|1),INTRON(MODIFIER|||||PTPRZ1|processed_transcript|CODING|ENST00000471837|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	48:0:0:0:0,0:0,0:0,0:48,48	114:0:0:0:0,0:8,8:1,1:105,105
7	125331932	.	A	G	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:0:0:0:34,35:0,0:0,0:0,0	97:1:0:0:91,93:0,0:5,5:0,0
7	125669479	.	C	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:0:0:0:0,0:31,31:0,0:0,0	103:0:0:0:0,0:96,96:0,0:7,7
7	126125427	.	T	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||908|GRM8|protein_coding|CODING|ENST00000339582|9|1),INTRON(MODIFIER||||908|GRM8|protein_coding|CODING|ENST00000358373|9|1),INTRON(MODIFIER||||908|GRM8|protein_coding|CODING|ENST00000444921|8|1),INTRON(MODIFIER|||||GRM8|nonsense_mediated_decay|CODING|ENST00000341617|9|1),INTRON(MODIFIER|||||GRM8|nonsense_mediated_decay|CODING|ENST00000472701|9|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	41:0:1:0:2,2:0,0:0,0:39,39	97:1:0:0:0,0:0,0:14,15:82,82
7	129614517	.	T	C	.	PASS	NT=ref;QSS=24;QSS_NT=24;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-306G20.1|antisense|NON_CODING|ENST00000587038|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	47:0:0:0:0,0:0,0:0,0:47,48	107:1:0:0:0,0:7,9:0,0:99,99
7	130275566	.	G	A	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRAGENIC(MODIFIER|||||COPG2||CODING|||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	41:2:0:0:0,0:0,2:39,46:0,0	96:6:0:0:5,6:3,4:82,99:0,0
7	130778896	.	T	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||AC058791.2|lincRNA|NON_CODING|ENST00000423414|1|1),INTRON(MODIFIER|||||AC058791.2|lincRNA|NON_CODING|ENST00000429901|2|1),INTRON(MODIFIER|||||AC058791.2|lincRNA|NON_CODING|ENST00000431189|1|1),INTRON(MODIFIER|||||AC058791.2|lincRNA|NON_CODING|ENST00000433079|2|1),INTRON(MODIFIER|||||AC058791.2|lincRNA|NON_CODING|ENST00000451786|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	50:2:0:0:0,0:1,1:0,0:47,50	118:7:0:0:0,1:9,12:0,0:102,107
7	131665700	.	A	T	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:0:0:0:37,38:0,0:0,0:0,0	97:2:0:0:88,91:0,1:0,0:7,7
7	132862315	.	A	G	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	47:5:0:0:42,49:0,0:0,0:0,0	92:4:0:0:79,84:3,3:6,6:0,0
7	135446319	.	C	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:3:0:0:0,0:28,33:0,0:0,0	98:2:0:0:0,0:90,93:0,0:6,6
7	135635358	.	G	A	.	PASS	NT=ref;QSS=42;QSS_NT=38;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||52|MTPN|protein_coding|CODING|ENST00000435723|1|1),NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|Ctt/Ttt|L87F|118|MTPN|protein_coding|CODING|ENST00000393085|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	53:0:0:0:2,2:0,0:51,51:0,0	216:1:0:0:92,92:2,2:121,125:0,0
7	139002542	.	G	A	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||U6|snRNA|NON_CODING|ENST00000384116||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:1:0:0:0,0:0,0:36,37:0,0	94:0:0:0:7,7:0,0:87,87:0,0
7	140180589	.	G	A	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=GG->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER||||101|MKRN1|protein_coding|CODING|ENST00000473444||1),UPSTREAM(MODIFIER||||111|MKRN1|protein_coding|CODING|ENST00000480552||1),UPSTREAM(MODIFIER||||135|MKRN1|protein_coding|CODING|ENST00000494939||1),UPSTREAM(MODIFIER||||147|MKRN1|protein_coding|CODING|ENST00000481705||1),UPSTREAM(MODIFIER||||164|MKRN1|protein_coding|CODING|ENST00000467513||1),UPSTREAM(MODIFIER||||192|MKRN1|protein_coding|CODING|ENST00000471104||1),UPSTREAM(MODIFIER||||216|MKRN1|protein_coding|CODING|ENST00000437223||1),UPSTREAM(MODIFIER||||329|MKRN1|protein_coding|CODING|ENST00000443720||1),UPSTREAM(MODIFIER||||418|MKRN1|protein_coding|CODING|ENST00000474576||1),UPSTREAM(MODIFIER||||482|MKRN1|protein_coding|CODING|ENST00000255977||1),UPSTREAM(MODIFIER|||||MKRN1|nonsense_mediated_decay|CODING|ENST00000475180||1),UPSTREAM(MODIFIER|||||MKRN1|nonsense_mediated_decay|CODING|ENST00000495305||1),UPSTREAM(MODIFIER|||||MKRN1|nonsense_mediated_decay|CODING|ENST00000496169||1),UPSTREAM(MODIFIER|||||MKRN1|nonsense_mediated_decay|CODING|ENST00000498535||1),UPSTREAM(MODIFIER|||||MKRN1|retained_intron|CODING|ENST00000475010||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:0:0:0:0,0:2,2:27,27:0,0	82:0:1:0:13,13:10,10:59,62:0,0
7	140255919	.	G	A	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1009|DENND2A|protein_coding|CODING|ENST00000275884|10|1),INTRON(MODIFIER||||1009|DENND2A|protein_coding|CODING|ENST00000496613|11|1),INTRON(MODIFIER||||1009|DENND2A|protein_coding|CODING|ENST00000537639|9|1),INTRON(MODIFIER||||795|DENND2A|protein_coding|CODING|ENST00000492720|10|1),INTRON(MODIFIER|||||DENND2A|nonsense_mediated_decay|CODING|ENST00000461883|9|1),UPSTREAM(MODIFIER||||162|DENND2A|protein_coding|CODING|ENST00000469373||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:0:0:0:0,0:0,0:37,37:0,0	97:0:0:0:8,9:0,0:89,89:0,0
7	141451447	.	A	G	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=AA->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=DOWNSTREAM(MODIFIER||||134|SSBP1|protein_coding|CODING|ENST00000467681||1),DOWNSTREAM(MODIFIER||||148|SSBP1|protein_coding|CODING|ENST00000265304||1),DOWNSTREAM(MODIFIER||||148|SSBP1|protein_coding|CODING|ENST00000481508||1),DOWNSTREAM(MODIFIER||||148|SSBP1|protein_coding|CODING|ENST00000484178||1),DOWNSTREAM(MODIFIER||||148|SSBP1|protein_coding|CODING|ENST00000498107||1),DOWNSTREAM(MODIFIER|||||SSBP1|processed_transcript|CODING|ENST00000465167||1),DOWNSTREAM(MODIFIER|||||SSBP1|processed_transcript|CODING|ENST00000469123||1),INTRON(MODIFIER||||148|SSBP1|protein_coding|CODING|ENST00000465582|7|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:0:0:0:39,43:0,0:0,1:0,0	126:2:0:0:112,124:0,0:12,23:0,0
7	142115166	.	T	C	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||TRBV7-7|TR_V_gene|NON_CODING|ENST00000390377||1),INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||TRBV5-7|TR_V_gene|NON_CODING|ENST00000390378||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:0:0:0:0,0:0,0:0,0:38,39	116:1:0:0:0,0:7,9:0,0:108,110
7	142154866	.	T	C	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=TT->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=DOWNSTREAM(MODIFIER|||||TRBV7-5|TR_V_pseudogene|NON_CODING|ENST00000390382||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	44:1:0:0:0,0:0,6:1,2:42,43	91:3:0:0:0,0:11,29:0,0:77,80
7	142465322	.	C	T	.	PASS	NT=ref;QSS=27;QSS_NT=27;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||142|PRSS1|protein_coding|CODING|ENST00000492062||1),DOWNSTREAM(MODIFIER||||247|PRSS1|protein_coding|CODING|ENST00000311737||1),DOWNSTREAM(MODIFIER||||261|PRSS1|protein_coding|CODING|ENST00000486171||1),DOWNSTREAM(MODIFIER|||||PRSS1|retained_intron|CODING|ENST00000463701||1),INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||PRSS3P1|unprocessed_pseudogene|NON_CODING|ENST00000503996||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	48:0:0:0:1,1:47,47:0,0:0,0	96:0:0:0:0,0:82,82:0,0:14,16
7	142465323	.	A	G	.	PASS	NT=ref;QSS=28;QSS_NT=28;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||142|PRSS1|protein_coding|CODING|ENST00000492062||1),DOWNSTREAM(MODIFIER||||247|PRSS1|protein_coding|CODING|ENST00000311737||1),DOWNSTREAM(MODIFIER||||261|PRSS1|protein_coding|CODING|ENST00000486171||1),DOWNSTREAM(MODIFIER|||||PRSS1|retained_intron|CODING|ENST00000463701||1),INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||PRSS3P1|unprocessed_pseudogene|NON_CODING|ENST00000503996||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	49:0:0:0:49,49:0,0:0,0:0,0	96:0:0:0:82,82:0,0:14,17:0,0
7	142468008	.	C	A	.	PASS	NT=ref;QSS=24;QSS_NT=24;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||PRSS3P1|unprocessed_pseudogene|NON_CODING|ENST00000503996||1),UPSTREAM(MODIFIER|||||PRSS3P1|unprocessed_pseudogene|NON_CODING|ENST00000539842||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	48:0:0:0:0,0:48,49:0,0:0,0	85:2:0:0:7,9:76,79:0,0:0,0
7	142468009	.	C	T	.	PASS	NT=ref;QSS=24;QSS_NT=24;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||PRSS3P1|unprocessed_pseudogene|NON_CODING|ENST00000503996||1),UPSTREAM(MODIFIER|||||PRSS3P1|unprocessed_pseudogene|NON_CODING|ENST00000539842||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	48:0:0:0:0,0:48,49:0,0:0,0	84:2:0:0:1,1:74,77:0,0:7,9
7	142471933	.	A	G	.	PASS	NT=ref;QSS=23;QSS_NT=23;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||PRSS3P1|unprocessed_pseudogene|NON_CODING|ENST00000503996||1),DOWNSTREAM(MODIFIER|||||PRSS3P1|unprocessed_pseudogene|NON_CODING|ENST00000539842||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	53:2:0:0:51,53:0,0:0,0:0,0	126:2:0:0:117,119:0,0:7,7:0,0
7	143046610	.	C	A	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||332|FAM131B|protein_coding|CODING|ENST00000409222||1),DOWNSTREAM(MODIFIER||||332|FAM131B|protein_coding|CODING|ENST00000409346||1),DOWNSTREAM(MODIFIER||||332|FAM131B|protein_coding|CODING|ENST00000409408||1),DOWNSTREAM(MODIFIER||||348|FAM131B|protein_coding|CODING|ENST00000409578||1),DOWNSTREAM(MODIFIER||||360|FAM131B|protein_coding|CODING|ENST00000443739||1),INTRON(MODIFIER||||988|CLCN1|protein_coding|CODING|ENST00000343257|20|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:0:0:0:0,0:37,37:0,0:0,0	119:2:0:0:11,11:106,108:0,0:0,0
7	143772764	.	T	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||310|OR2A25|protein_coding|CODING|ENST00000408898||1),INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||OR2A41P|unprocessed_pseudogene|NON_CODING|ENST00000473586||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	45:1:0:0:0,0:1,1:0,0:43,44	84:1:0:0:0,1:6,6:0,0:77,77
7	144500545	.	C	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||165|TPK1|protein_coding|CODING|ENST00000552881|2|1),INTRON(MODIFIER||||194|TPK1|protein_coding|CODING|ENST00000378099|2|1),INTRON(MODIFIER||||243|TPK1|protein_coding|CODING|ENST00000360057|2|1),INTRON(MODIFIER|||||TPK1|nonsense_mediated_decay|CODING|ENST00000378098|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	28:0:0:0:0,0:28,28:0,0:0,0	115:1:0:0:0,0:103,104:11,11:0,0
7	144576568	.	G	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	27:0:0:0:0,0:0,0:27,27:0,0	103:1:0:0:5,5:0,0:97,99:0,0
7	145964769	.	A	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1331|CNTNAP2|protein_coding|CODING|ENST00000361727|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:2:0:0:34,37:0,0:0,0:0,0	81:0:0:0:74,74:0,0:0,0:7,7
7	146925908	.	C	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER||||1331|CNTNAP2|protein_coding|CODING|ENST00000361727|8|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:1:0:0:0,0:31,32:0,0:0,1	107:1:0:0:0,0:101,102:0,0:5,9
7	146932349	.	T	A	.	PASS	NT=ref;QSS=24;QSS_NT=24;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1331|CNTNAP2|protein_coding|CODING|ENST00000361727|8|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	47:0:0:0:0,0:0,0:0,0:47,47	87:1:0:0:8,9:0,0:0,0:78,78
7	147472437	rs4988615	A	T	.	PASS	NT=ref;QSS=24;QSS_NT=24;SGT=AA->AT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER||||1331|CNTNAP2|protein_coding|CODING|ENST00000361727|13|1),INTRON(MODIFIER||||184|CNTNAP2|protein_coding|CODING|ENST00000455301|2|1);RSPOS=147472437;dbSNPBuildID=113;SSR=0;SAO=0;VP=050000080001000002000100;GENEINFO=CNTNAP2:26047;WGT=1;VC=SNV;INT;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	20:1:0:0:19,26:0,0:0,0:0,0	65:3:0:0:45,79:0,0:0,0:17,17
7	147592057	rs199815522	C	T	.	PASS	NT=ref;QSS=23;QSS_NT=23;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1331|CNTNAP2|protein_coding|CODING|ENST00000361727|13|1),INTRON(MODIFIER||||184|CNTNAP2|protein_coding|CODING|ENST00000455301|2|1);RSPOS=147592057;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000080015000002000100;WGT=1;VC=SNV;INT;OTH;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	47:1:0:0:0,0:46,47:0,0:0,0	91:4:3:0:0,0:81,85:0,0:6,7
7	149252260	.	G	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||ZNF767|processed_transcript|NON_CODING|ENST00000481762||1),INTRON(MODIFIER|||||ZNF767|processed_transcript|NON_CODING|ENST00000463567|4|1),INTRON(MODIFIER|||||ZNF767|processed_transcript|NON_CODING|ENST00000472212|4|1),INTRON(MODIFIER|||||ZNF767|processed_transcript|NON_CODING|ENST00000486492|5|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	48:2:0:0:1,1:0,0:45,49:0,0	91:7:0:0:6,8:0,2:78,88:0,0
7	150606795	.	G	T	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	64:1:0:0:0,0:0,0:62,86:1,3	160:8:0:0:0,1:0,0:144,201:8,14
7	151592233	rs141286846	C	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=151592233;GMAF=0.0046;dbSNPBuildID=134;SSR=0;SAO=0;VP=050000000005000014000100;WGT=1;VC=SNV;ASP;KGPhase1;KGPROD	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	54:0:0:0:1,1:52,56:0,0:1,1	90:1:0:0:0,0:84,93:0,0:5,5
7	151808431	.	A	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||133|GALNT11|protein_coding|CODING|ENST00000422997||1),INTRON(MODIFIER||||527|GALNT11|protein_coding|CODING|ENST00000452146|6|1),INTRON(MODIFIER||||608|GALNT11|protein_coding|CODING|ENST00000320311|7|1),INTRON(MODIFIER||||608|GALNT11|protein_coding|CODING|ENST00000430044|7|1),INTRON(MODIFIER||||608|GALNT11|protein_coding|CODING|ENST00000434507|9|1),INTRON(MODIFIER||||608|GALNT11|protein_coding|CODING|ENST00000443352|7|1),INTRON(MODIFIER|||||GALNT11|nonsense_mediated_decay|CODING|ENST00000447778|6|1),INTRON(MODIFIER|||||GALNT11|retained_intron|CODING|ENST00000491061|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	46:0:0:0:45,45:1,1:0,0:0,0	118:0:0:0:110,110:8,8:0,0:0,0
7	151942321	rs112372885	T	A	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||4911|MLL3|protein_coding|CODING|ENST00000262189|14|1),INTRON(MODIFIER||||4968|MLL3|protein_coding|CODING|ENST00000355193|14|1),INTRON(MODIFIER|||||MLL3|nonsense_mediated_decay|CODING|ENST00000558084|14|1);RSPOS=151942321;dbSNPBuildID=132;SSR=0;SAO=0;VP=050000080001000102000100;GENEINFO=MLL3:58508;WGT=1;VC=SNV;INT;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	42:0:0:0:0,0:0,0:0,0:42,48	146:2:0:0:10,15:1,1:0,0:133,141
7	151963019	.	C	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||4911|MLL3|protein_coding|CODING|ENST00000262189|7|1),INTRON(MODIFIER||||4968|MLL3|protein_coding|CODING|ENST00000355193|7|1),INTRON(MODIFIER|||||MLL3|nonsense_mediated_decay|CODING|ENST00000558084|7|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	58:0:0:0:0,0:58,70:0,0:0,0	151:1:0:0:1,1:144,163:0,0:5,7
7	152074081	rs55748644	G	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||154|MLL3|protein_coding|CODING|ENST00000452749|1|1),INTRON(MODIFIER||||4911|MLL3|protein_coding|CODING|ENST00000262189|1|1),INTRON(MODIFIER||||4968|MLL3|protein_coding|CODING|ENST00000355193|1|1),INTRON(MODIFIER|||||MLL3|nonsense_mediated_decay|CODING|ENST00000558084|1|1);RSPOS=152074081;dbSNPBuildID=129;SSR=0;SAO=0;VP=050100080001000102000100;GENEINFO=MLL3:58508;WGT=1;VC=SNV;SLO;INT;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	46:0:0:0:1,1:0,0:45,45:0,0	100:1:0:0:5,9:0,0:94,94:0,0
7	152074090	rs55686314	C	T	.	PASS	NT=ref;QSS=24;QSS_NT=24;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||154|MLL3|protein_coding|CODING|ENST00000452749|1|1),INTRON(MODIFIER||||4911|MLL3|protein_coding|CODING|ENST00000262189|1|1),INTRON(MODIFIER||||4968|MLL3|protein_coding|CODING|ENST00000355193|1|1),INTRON(MODIFIER|||||MLL3|nonsense_mediated_decay|CODING|ENST00000558084|1|1);RSPOS=152074090;dbSNPBuildID=129;SSR=0;SAO=0;VP=050100080001040102000100;GENEINFO=MLL3:58508;WGT=1;VC=SNV;SLO;INT;VLD;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	47:0:0:0:0,0:47,47:0,0:0,0	98:1:0:0:0,0:90,90:0,0:7,13
7	152081489	rs62495497	T	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=TT->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER||||154|MLL3|protein_coding|CODING|ENST00000452749|1|1),INTRON(MODIFIER||||4911|MLL3|protein_coding|CODING|ENST00000262189|1|1),INTRON(MODIFIER||||4968|MLL3|protein_coding|CODING|ENST00000355193|1|1),INTRON(MODIFIER|||||MLL3|nonsense_mediated_decay|CODING|ENST00000558084|1|1);RSPOS=152081489;dbSNPBuildID=129;SSR=0;SAO=0;VP=050000080001000002000100;GENEINFO=MLL3:58508;WGT=1;VC=SNV;INT;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:1:0:0:0,0:0,1:0,0:39,41	114:2:0:0:0,0:8,15:1,2:103,109
7	152543247	.	C	T	.	PASS	NT=ref;QSS=29;QSS_NT=29;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||330|ACTR3B|protein_coding|CODING|ENST00000397282|8|1),INTRON(MODIFIER||||330|ACTR3B|protein_coding|CODING|ENST00000537264|8|1),INTRON(MODIFIER||||348|ACTR3B|protein_coding|CODING|ENST00000377776|9|1),INTRON(MODIFIER||||418|ACTR3B|protein_coding|CODING|ENST00000256001|9|1),INTRON(MODIFIER|||||ACTR3B|retained_intron|CODING|ENST00000479402|5|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	59:0:0:0:0,0:58,59:1,1:0,0	83:3:0:0:0,1:73,78:0,0:7,7
7	153405412	.	A	T	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:0:0:0:38,39:1,1:0,0:0,0	77:0:0:0:72,75:0,0:0,0:5,5
7	153429235	.	C	T	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:0:0:0:0,0:40,40:0,0:0,0	83:1:0:0:1,1:74,75:0,0:7,7
7	153747316	.	G	C	.	PASS	NT=ref;QSS=24;QSS_NT=24;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||801|DPP6|protein_coding|CODING|ENST00000404039|1|1),INTRON(MODIFIER|||||AC006019.3|antisense|NON_CODING|ENST00000454405|1|1),UPSTREAM(MODIFIER||||353|DPP6|protein_coding|CODING|ENST00000406326||1),UPSTREAM(MODIFIER||||865|DPP6|protein_coding|CODING|ENST00000377770||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	48:0:0:0:0,0:0,0:48,48:0,0	112:0:0:0:0,0:11,11:101,101:0,0
7	154492490	.	A	G	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||758|DPP6|protein_coding|CODING|ENST00000427557|5|1),INTRON(MODIFIER||||801|DPP6|protein_coding|CODING|ENST00000404039|7|1),INTRON(MODIFIER||||803|DPP6|protein_coding|CODING|ENST00000332007|7|1),INTRON(MODIFIER||||865|DPP6|protein_coding|CODING|ENST00000377770|7|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:0:0:0:34,34:0,0:0,0:0,0	78:3:0:0:65,69:2,2:8,9:0,0
7	154540884	rs112442208	A	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||758|DPP6|protein_coding|CODING|ENST00000427557|6|1),INTRON(MODIFIER||||801|DPP6|protein_coding|CODING|ENST00000404039|8|1),INTRON(MODIFIER||||803|DPP6|protein_coding|CODING|ENST00000332007|8|1),INTRON(MODIFIER||||865|DPP6|protein_coding|CODING|ENST00000377770|8|1);RSPOS=154540884;dbSNPBuildID=132;SSR=0;SAO=0;VP=050000000005000102000100;WGT=1;VC=SNV;ASP;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	17:0:0:0:17,18:0,0:0,0:0,0	57:4:0:0:42,46:0,0:11,14:0,0
7	156787711	.	A	T	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||MNX1|processed_transcript|CODING|ENST00000469500|1|1),INTRON(MODIFIER|||||MNX1|processed_transcript|CODING|ENST00000479817|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	48:2:0:0:45,48:0,1:1,1:0,0	84:2:0:0:76,79:0,0:0,0:6,6
7	157518465	rs2952642	T	G	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=TT->GT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER||||1015|PTPRN2|protein_coding|CODING|ENST00000389418|12|1),INTRON(MODIFIER||||1038|PTPRN2|protein_coding|CODING|ENST00000404321|12|1),INTRON(MODIFIER||||977|PTPRN2|protein_coding|CODING|ENST00000409483|11|1),INTRON(MODIFIER||||986|PTPRN2|protein_coding|CODING|ENST00000389413|11|1),INTRON(MODIFIER||||998|PTPRN2|protein_coding|CODING|ENST00000389416|11|1);RSPOS=157518465;dbSNPBuildID=101;SSR=0;SAO=0;VP=050000080005040102000100;GENEINFO=PTPRN2:5799;WGT=1;VC=SNV;INT;ASP;VLD;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	20:4:0:0:0,0:0,1:0,2:16,29	58:4:0:0:0,0:0,0:16,20:38,71
7	157582991	rs113544157	A	G	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1015|PTPRN2|protein_coding|CODING|ENST00000389418|12|1),INTRON(MODIFIER||||1038|PTPRN2|protein_coding|CODING|ENST00000404321|12|1),INTRON(MODIFIER||||977|PTPRN2|protein_coding|CODING|ENST00000409483|11|1),INTRON(MODIFIER||||986|PTPRN2|protein_coding|CODING|ENST00000389413|11|1),INTRON(MODIFIER||||998|PTPRN2|protein_coding|CODING|ENST00000389416|11|1);RSPOS=157582991;dbSNPBuildID=132;SSR=0;SAO=0;VP=050000080005000102000100;GENEINFO=PTPRN2:5799;WGT=1;VC=SNV;INT;ASP;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	41:2:0:0:39,44:0,0:0,0:0,0	128:8:0:0:109,123:0,0:10,11:1,1
7	157647925	.	C	G	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1015|PTPRN2|protein_coding|CODING|ENST00000389418|12|1),INTRON(MODIFIER||||1038|PTPRN2|protein_coding|CODING|ENST00000404321|12|1),INTRON(MODIFIER||||977|PTPRN2|protein_coding|CODING|ENST00000409483|11|1),INTRON(MODIFIER||||986|PTPRN2|protein_coding|CODING|ENST00000389413|11|1),INTRON(MODIFIER||||998|PTPRN2|protein_coding|CODING|ENST00000389416|11|1),INTRON(MODIFIER|||||AC011899.9|antisense|NON_CODING|ENST00000434059|1|1),INTRON(MODIFIER|||||AC011899.9|antisense|NON_CODING|ENST00000436151|1|1),INTRON(MODIFIER|||||AC011899.9|antisense|NON_CODING|ENST00000438047|1|1),INTRON(MODIFIER|||||AC011899.9|antisense|NON_CODING|ENST00000443338|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	45:3:0:0:0,0:42,45:0,0:0,0	111:6:0:0:0,0:99,103:6,9:0,0
7	157755770	.	G	A	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=GG->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER||||1015|PTPRN2|protein_coding|CODING|ENST00000389418|11|1),INTRON(MODIFIER||||1038|PTPRN2|protein_coding|CODING|ENST00000404321|11|1),INTRON(MODIFIER||||977|PTPRN2|protein_coding|CODING|ENST00000409483|10|1),INTRON(MODIFIER||||986|PTPRN2|protein_coding|CODING|ENST00000389413|10|1),INTRON(MODIFIER||||998|PTPRN2|protein_coding|CODING|ENST00000389416|10|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	44:0:0:0:0,0:0,0:44,44:0,0	115:0:0:0:12,12:0,0:103,105:0,0
7	157882245	rs138420044	A	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER||||1015|PTPRN2|protein_coding|CODING|ENST00000389418|10|1),INTRON(MODIFIER||||1038|PTPRN2|protein_coding|CODING|ENST00000404321|10|1),INTRON(MODIFIER||||977|PTPRN2|protein_coding|CODING|ENST00000409483|9|1),INTRON(MODIFIER||||986|PTPRN2|protein_coding|CODING|ENST00000389413|9|1),INTRON(MODIFIER||||998|PTPRN2|protein_coding|CODING|ENST00000389416|9|1);RSPOS=157882245;dbSNPBuildID=134;SSR=0;SAO=0;VP=050000080005000002000100;GENEINFO=PTPRN2:5799;WGT=1;VC=SNV;INT;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	65:4:0:0:61,99:0,1:0,0:0,3	160:19:0:0:127,255:3,6:0,1:11,22
7	157941115	.	T	A	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1015|PTPRN2|protein_coding|CODING|ENST00000389418|6|1),INTRON(MODIFIER||||1038|PTPRN2|protein_coding|CODING|ENST00000404321|6|1),INTRON(MODIFIER||||977|PTPRN2|protein_coding|CODING|ENST00000409483|5|1),INTRON(MODIFIER||||986|PTPRN2|protein_coding|CODING|ENST00000389413|6|1),INTRON(MODIFIER||||998|PTPRN2|protein_coding|CODING|ENST00000389416|5|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	84:5:0:0:1,9:0,4:1,5:77,219	148:10:0:0:14,40:3,10:2,7:119,512
7	158105472	.	C	T	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1015|PTPRN2|protein_coding|CODING|ENST00000389418|3|1),INTRON(MODIFIER||||1038|PTPRN2|protein_coding|CODING|ENST00000404321|3|1),INTRON(MODIFIER||||977|PTPRN2|protein_coding|CODING|ENST00000409483|2|1),INTRON(MODIFIER||||986|PTPRN2|protein_coding|CODING|ENST00000389413|3|1),INTRON(MODIFIER||||998|PTPRN2|protein_coding|CODING|ENST00000389416|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	62:3:0:0:0,0:58,61:0,0:1,1	88:0:0:0:0,0:83,84:0,0:5,5
7	158105481	.	A	C	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=AA->AC;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER||||1015|PTPRN2|protein_coding|CODING|ENST00000389418|3|1),INTRON(MODIFIER||||1038|PTPRN2|protein_coding|CODING|ENST00000404321|3|1),INTRON(MODIFIER||||977|PTPRN2|protein_coding|CODING|ENST00000409483|2|1),INTRON(MODIFIER||||986|PTPRN2|protein_coding|CODING|ENST00000389413|3|1),INTRON(MODIFIER||||998|PTPRN2|protein_coding|CODING|ENST00000389416|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	61:3:0:0:58,59:0,1:0,1:0,0	86:0:0:0:76,78:10,10:0,0:0,0
7	158141569	.	A	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1015|PTPRN2|protein_coding|CODING|ENST00000389418|2|1),INTRON(MODIFIER||||1038|PTPRN2|protein_coding|CODING|ENST00000404321|2|1),INTRON(MODIFIER||||977|PTPRN2|protein_coding|CODING|ENST00000409483|2|1),INTRON(MODIFIER||||986|PTPRN2|protein_coding|CODING|ENST00000389413|2|1),INTRON(MODIFIER||||998|PTPRN2|protein_coding|CODING|ENST00000389416|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	47:0:0:0:47,57:0,0:0,0:0,0	133:5:0:0:122,142:6,9:0,1:0,0
7	158141593	.	C	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1015|PTPRN2|protein_coding|CODING|ENST00000389418|2|1),INTRON(MODIFIER||||1038|PTPRN2|protein_coding|CODING|ENST00000404321|2|1),INTRON(MODIFIER||||977|PTPRN2|protein_coding|CODING|ENST00000409483|2|1),INTRON(MODIFIER||||986|PTPRN2|protein_coding|CODING|ENST00000389413|2|1),INTRON(MODIFIER||||998|PTPRN2|protein_coding|CODING|ENST00000389416|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:1:0:0:0,0:29,44:0,0:0,0	111:6:0:0:0,0:93,119:12,14:0,0
7	158250141	rs113763651	C	A	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1015|PTPRN2|protein_coding|CODING|ENST00000389418|2|1),INTRON(MODIFIER||||1038|PTPRN2|protein_coding|CODING|ENST00000404321|2|1),INTRON(MODIFIER||||977|PTPRN2|protein_coding|CODING|ENST00000409483|2|1),INTRON(MODIFIER||||986|PTPRN2|protein_coding|CODING|ENST00000389413|2|1),INTRON(MODIFIER||||998|PTPRN2|protein_coding|CODING|ENST00000389416|1|1);RSPOS=158250141;dbSNPBuildID=132;SSR=0;SAO=0;VP=050000080001000102000100;GENEINFO=PTPRN2:5799;WGT=1;VC=SNV;INT;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	57:1:0:0:0,0:56,58:0,0:0,0	97:0:0:0:7,7:90,90:0,0:0,0
7	158745926	rs2657341	C	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER|||||WDR60|nonsense_mediated_decay|CODING|ENST00000454771|4|1);RSPOS=158745926;RV;dbSNPBuildID=100;SSR=0;SAO=0;VP=050000000001040102000100;WGT=1;VC=SNV;VLD;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:1:0:0:0,0:28,29:0,0:0,1	65:4:0:0:0,0:53,56:0,0:8,10
7	158963924	.	G	C	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->CG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	54:0:0:0:0,0:0,1:54,59:0,0	98:2:0:0:1,4:10,14:85,99:0,0
7	158996365	.	G	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	67:2:0:0:1,5:1,2:63,185:0,0	149:13:0:0:13,25:0,1:123,376:0,0
7	159001700	.	A	C	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:1:0:0:38,42:0,0:0,0:0,0	71:5:0:0:60,73:6,6:0,0:0,0
8	174591	.	A	G	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	41:0:0:0:40,40:0,0:1,1:0,0	116:2:0:0:101,101:0,0:13,15:0,0
8	174596	.	G	A	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:0:0:0:0,0:0,0:40,40:0,0	116:3:0:0:12,14:0,0:101,102:0,0
8	752285	rs113612429	T	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER|||||ERICH1-AS1|lincRNA|NON_CODING|ENST00000522092|1|1),INTRON(MODIFIER|||||ERICH1-AS1|lincRNA|NON_CODING|ENST00000577187|1|1);RSPOS=752285;dbSNPBuildID=132;SSR=0;SAO=0;VP=050000000001000102000100;WGT=1;VC=SNV;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	94:5:0:0:0,0:0,1:0,1:89,101	199:18:0:0:0,1:10,20:0,0:171,203
8	883322	.	T	C	.	PASS	NT=ref;QSS=25;QSS_NT=25;SGT=TT->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER|||||ERICH1-AS1|lincRNA|NON_CODING|ENST00000522092|3|1),INTRON(MODIFIER|||||ERICH1-AS1|lincRNA|NON_CODING|ENST00000524139|2|1),INTRON(MODIFIER|||||ERICH1-AS1|lincRNA|NON_CODING|ENST00000578889|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	69:1:0:0:1,1:0,1:1,1:66,69	124:1:0:0:0,0:10,11:0,0:113,114
8	991839	.	C	G	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||ERICH1-AS1|lincRNA|NON_CODING|ENST00000522092|3|1),INTRON(MODIFIER|||||ERICH1-AS1|lincRNA|NON_CODING|ENST00000578889|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	43:1:0:0:0,0:42,43:0,0:0,0	101:2:0:0:0,0:90,91:9,10:0,0
8	991842	.	C	T	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||ERICH1-AS1|lincRNA|NON_CODING|ENST00000522092|3|1),INTRON(MODIFIER|||||ERICH1-AS1|lincRNA|NON_CODING|ENST00000578889|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	43:1:0:0:0,0:42,43:0,0:0,0	99:2:0:0:0,0:91,92:0,0:6,7
8	1163171	.	C	T	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||CTD-2281E23.2|lincRNA|NON_CODING|ENST00000520524|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:0:0:0:0,0:37,38:0,0:0,0	97:0:0:0:0,0:92,92:0,0:5,5
8	1197081	rs112536917	T	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=EXON(MODIFIER|||||CTD-2281E23.3|lincRNA|NON_CODING|ENST00000517950|2|1),INTRON(MODIFIER|||||CTD-2281E23.2|lincRNA|NON_CODING|ENST00000520524|1|1),UPSTREAM(MODIFIER|||||CTD-2281E23.2|lincRNA|NON_CODING|ENST00000522989||1);RSPOS=1197081;dbSNPBuildID=132;SSR=0;SAO=0;VP=050100000001000102000100;WGT=1;VC=SNV;SLO;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	101:10:0:0:1,1:1,2:1,2:88,116	221:27:0:0:0,2:13,16:1,2:180,254
8	1263457	.	G	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:1:0:0:0,1:0,0:39,44:0,0	95:2:0:0:8,13:0,0:85,95:0,0
8	1320389	.	T	A	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||AF067845.1|lincRNA|NON_CODING|ENST00000567210||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:1:0:0:0,0:0,1:0,0:38,39	89:5:0:0:11,16:0,0:0,0:73,76
8	1320466	.	G	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||AF067845.1|lincRNA|NON_CODING|ENST00000567210||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:0:0:0:0,0:0,0:36,37:0,0	103:0:0:0:5,6:0,0:98,98:0,0
8	1439495	rs7464287	G	C	.	PASS	NT=ref;QSS=24;QSS_NT=24;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=1439495;dbSNPBuildID=116;SSR=0;SAO=0;VP=050000000001000002000100;WGT=1;VC=SNV;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	47:1:0:0:0,0:0,0:46,47:0,0	92:2:0:0:0,0:10,10:80,83:0,0
8	1807228	.	T	C	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1306|ARHGEF10|protein_coding|CODING|ENST00000520359|3|1),INTRON(MODIFIER||||1340|ARHGEF10|protein_coding|CODING|ENST00000262112|3|1),INTRON(MODIFIER||||1344|ARHGEF10|protein_coding|CODING|ENST00000349830|3|1),INTRON(MODIFIER||||1368|ARHGEF10|protein_coding|CODING|ENST00000518288|4|1),INTRON(MODIFIER||||1369|ARHGEF10|protein_coding|CODING|ENST00000398564|3|1),INTRON(MODIFIER||||610|ARHGEF10|protein_coding|CODING|ENST00000398560|4|1),INTRON(MODIFIER|||||ARHGEF10|processed_transcript|CODING|ENST00000382795|1|1),UPSTREAM(MODIFIER|||||ARHGEF10|retained_intron|CODING|ENST00000520972||1),UPSTREAM(MODIFIER|||||ARHGEF10|retained_intron|CODING|ENST00000522969||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:1:0:0:0,0:0,0:0,0:39,41	106:12:0:0:0,1:9,12:1,2:84,93
8	2249765	.	C	A	.	PASS	NT=ref;QSS=27;QSS_NT=27;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	54:0:0:0:0,0:54,58:0,0:0,0	123:1:0:0:12,14:110,126:0,0:0,0
8	2311955	.	C	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:0:0:0:0,0:30,30:0,0:0,0	91:2:0:0:0,0:82,85:0,0:7,7
8	2999322	.	C	G	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||2109|CSMD1|protein_coding|CODING|ENST00000539096|41|1),INTRON(MODIFIER||||3387|CSMD1|protein_coding|CODING|ENST00000542608|41|1),INTRON(MODIFIER||||3388|CSMD1|protein_coding|CODING|ENST00000400186|42|1),INTRON(MODIFIER||||3564|CSMD1|protein_coding|CODING|ENST00000537824|41|1),INTRON(MODIFIER||||3565|CSMD1|protein_coding|CODING|ENST00000520002|42|1),INTRON(MODIFIER|||||CSMD1|processed_transcript|CODING|ENST00000523387|17|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	41:1:0:0:0,0:40,41:0,0:0,0	88:1:0:0:0,0:81,84:6,6:0,0
8	3172854	.	A	G	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||2109|CSMD1|protein_coding|CODING|ENST00000539096|23|1),INTRON(MODIFIER||||3387|CSMD1|protein_coding|CODING|ENST00000542608|23|1),INTRON(MODIFIER||||3388|CSMD1|protein_coding|CODING|ENST00000400186|24|1),INTRON(MODIFIER||||3564|CSMD1|protein_coding|CODING|ENST00000537824|23|1),INTRON(MODIFIER||||3565|CSMD1|protein_coding|CODING|ENST00000520002|24|1),INTRON(MODIFIER|||||CSMD1|retained_intron|CODING|ENST00000523488|7|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	25:1:0:0:24,24:0,0:0,0:0,1	94:1:0:0:79,80:0,0:14,14:0,0
8	3382505	.	A	C	.	PASS	NT=ref;QSS=60;QSS_NT=60;SGT=AA->AC;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER||||2109|CSMD1|protein_coding|CODING|ENST00000539096|10|1),INTRON(MODIFIER||||3387|CSMD1|protein_coding|CODING|ENST00000542608|10|1),INTRON(MODIFIER||||3388|CSMD1|protein_coding|CODING|ENST00000400186|11|1),INTRON(MODIFIER||||3564|CSMD1|protein_coding|CODING|ENST00000537824|10|1),INTRON(MODIFIER||||3565|CSMD1|protein_coding|CODING|ENST00000520002|11|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	46:0:0:0:46,46:0,0:0,0:0,0	162:0:0:0:115,117:46,46:0,0:1,1
8	3474427	.	A	G	.	PASS	NT=ref;QSS=23;QSS_NT=23;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||2109|CSMD1|protein_coding|CODING|ENST00000539096|7|1),INTRON(MODIFIER||||3387|CSMD1|protein_coding|CODING|ENST00000542608|7|1),INTRON(MODIFIER||||3388|CSMD1|protein_coding|CODING|ENST00000400186|7|1),INTRON(MODIFIER||||3564|CSMD1|protein_coding|CODING|ENST00000537824|7|1),INTRON(MODIFIER||||3565|CSMD1|protein_coding|CODING|ENST00000520002|7|1),UPSTREAM(MODIFIER|||||CSMD1|processed_transcript|CODING|ENST00000519090||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	45:0:0:0:45,45:0,0:0,0:0,0	99:0:0:0:91,91:0,0:8,8:0,0
8	3606101	.	G	C	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||2109|CSMD1|protein_coding|CODING|ENST00000539096|6|1),INTRON(MODIFIER||||3387|CSMD1|protein_coding|CODING|ENST00000542608|6|1),INTRON(MODIFIER||||3388|CSMD1|protein_coding|CODING|ENST00000400186|6|1),INTRON(MODIFIER||||3564|CSMD1|protein_coding|CODING|ENST00000537824|6|1),INTRON(MODIFIER||||3565|CSMD1|protein_coding|CODING|ENST00000520002|6|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	45:1:0:0:0,0:0,0:44,45:0,0	101:0:0:0:0,0:6,6:95,96:0,0
8	3684078	.	C	A	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||2109|CSMD1|protein_coding|CODING|ENST00000539096|5|1),INTRON(MODIFIER||||3387|CSMD1|protein_coding|CODING|ENST00000542608|5|1),INTRON(MODIFIER||||3388|CSMD1|protein_coding|CODING|ENST00000400186|5|1),INTRON(MODIFIER||||3564|CSMD1|protein_coding|CODING|ENST00000537824|5|1),INTRON(MODIFIER||||3565|CSMD1|protein_coding|CODING|ENST00000520002|5|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:0:0:0:0,0:39,39:0,0:0,0	104:0:0:0:8,8:96,96:0,0:0,0
8	4540808	.	A	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||2109|CSMD1|protein_coding|CODING|ENST00000539096|1|1),INTRON(MODIFIER||||3387|CSMD1|protein_coding|CODING|ENST00000542608|1|1),INTRON(MODIFIER||||3388|CSMD1|protein_coding|CODING|ENST00000400186|1|1),INTRON(MODIFIER||||3564|CSMD1|protein_coding|CODING|ENST00000537824|1|1),INTRON(MODIFIER||||3565|CSMD1|protein_coding|CODING|ENST00000520002|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:0:0:0:33,33:0,0:0,0:0,0	96:1:0:0:88,90:7,7:0,0:0,0
8	6979773	.	G	C	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||RPS3AP30|processed_pseudogene|NON_CODING|ENST00000438784||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	48:0:0:0:0,0:0,0:48,49:0,0	100:2:0:0:0,0:6,8:92,94:0,0
8	6979778	.	T	C	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||RPS3AP30|processed_pseudogene|NON_CODING|ENST00000438784||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	49:0:0:0:0,0:0,0:0,0:49,50	103:2:0:0:0,0:6,9:0,0:95,96
8	6979783	.	A	G	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||RPS3AP30|processed_pseudogene|NON_CODING|ENST00000438784||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	50:0:0:0:50,51:0,0:0,0:0,0	107:1:0:0:100,101:0,0:6,8:0,0
8	7541063	rs200207655	C	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=7541063;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	22:0:0:0:0,0:21,22:1,1:0,1	46:3:0:0:0,0:36,39:0,0:7,11
8	7913584	.	C	A	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=CC->AC;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	42:0:0:0:0,1:42,53:0,0:0,0	104:1:0:0:12,14:91,100:0,0:0,0
8	8665680	rs113233368	T	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1052|MFHAS1|protein_coding|CODING|ENST00000276282|1|1),INTRON(MODIFIER|||||MFHAS1|processed_transcript|CODING|ENST00000520091|1|1),INTRON(MODIFIER|||||MFHAS1|processed_transcript|CODING|ENST00000520715|1|1),INTRON(MODIFIER|||||MFHAS1|processed_transcript|CODING|ENST00000521881|1|1);RSPOS=8665680;dbSNPBuildID=132;SSR=0;SAO=0;VP=050000080001040102000100;GENEINFO=MFHAS1:9258;WGT=1;VC=SNV;INT;VLD;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:0:0:0:0,0:0,0:0,0:30,30	95:5:0:0:0,0:3,7:12,13:75,75
8	9006878	.	T	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||RP11-10A14.3|antisense|NON_CODING|ENST00000520017||1),DOWNSTREAM(MODIFIER|||||RP11-10A14.3|antisense|NON_CODING|ENST00000522057||1),INTRON(MODIFIER||||285|PPP1R3B|protein_coding|CODING|ENST00000310455|1|1),INTRON(MODIFIER||||285|PPP1R3B|protein_coding|CODING|ENST00000519699|1|1),UPSTREAM(MODIFIER||||100|RP11-10A14.4|protein_coding|CODING|ENST00000518496||1),UPSTREAM(MODIFIER||||54|RP11-10A14.4|protein_coding|CODING|ENST00000521718||1),UPSTREAM(MODIFIER|||||RP11-10A14.4|nonsense_mediated_decay|CODING|ENST00000517816||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	42:1:0:0:0,0:0,1:0,0:41,41	80:1:0:0:2,2:6,7:1,1:70,71
8	9042041	.	T	C	.	PASS	NT=ref;QSS=28;QSS_NT=28;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||RP11-10A14.5|lincRNA|NON_CODING|ENST00000417333||1),UPSTREAM(MODIFIER|||||RP11-10A14.5|lincRNA|NON_CODING|ENST00000512942||1),UPSTREAM(MODIFIER|||||RP11-10A14.5|lincRNA|NON_CODING|ENST00000523747||1),UPSTREAM(MODIFIER|||||RP11-10A14.6|lincRNA|NON_CODING|ENST00000521298||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	55:0:0:0:0,0:0,0:0,0:55,55	104:1:0:0:0,0:12,12:0,1:91,91
8	9824955	.	T	C	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:0:0:0:0,0:0,0:0,0:35,36	102:2:0:0:1,1:5,5:0,0:94,96
8	10348574	.	T	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||PRSS51|antisense|NON_CODING|ENST00000521149|2|1),INTRON(MODIFIER|||||PRSS51|antisense|NON_CODING|ENST00000523024|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	28:0:0:0:0,0:0,0:0,0:28,29	85:2:0:0:0,0:0,0:5,5:78,80
8	10465032	.	C	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=SYNONYMOUS_CODING(LOW|SILENT|gaG/gaA|E2192|2400|RP1L1|protein_coding|CODING|ENST00000382483|4|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	58:1:0:0:0,0:57,58:0,0:0,0	82:2:0:0:0,0:76,79:0,0:4,4
8	12142494	.	A	G	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	51:0:0:0:51,52:0,0:0,0:0,0	105:1:0:0:97,99:0,0:7,8:0,0
8	12145995	.	C	A	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||ABC12-47043100G14.2|unprocessed_pseudogene|NON_CODING|ENST00000526803||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	16:0:0:0:0,0:16,19:0,0:0,0	40:0:0:0:12,14:28,30:0,0:0,0
8	12145998	.	C	G	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||ABC12-47043100G14.2|unprocessed_pseudogene|NON_CODING|ENST00000526803||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	17:0:0:0:0,1:16,18:0,0:1,1	41:0:0:0:0,0:29,31:12,14:0,0
8	12255419	.	A	G	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||DEFB109P1|unprocessed_pseudogene|NON_CODING|ENST00000482450|1|1),INTRON(MODIFIER|||||FAM66A|processed_transcript|NON_CODING|ENST00000433621|4|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	41:0:0:0:41,45:0,0:0,1:0,0	107:3:0:0:91,95:1,1:12,18:0,0
8	12418079	.	A	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||149|AC130352.1|protein_coding|CODING|ENST00000357132|6|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	68:17:1:0:51,95:0,0:0,2:0,0	198:48:2:0:144,268:0,0:6,13:0,0
8	12475450	.	G	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:0:0:0:0,0:0,0:30,30:0,0	111:1:0:0:0,0:0,0:102,103:8,11
8	13337037	.	C	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->AC;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER||||1528|DLC1|protein_coding|CODING|ENST00000276297|2|1),INTRON(MODIFIER||||463|DLC1|protein_coding|CODING|ENST00000511869|2|1),INTRON(MODIFIER||||498|DLC1|protein_coding|CODING|ENST00000316609|2|1),INTRON(MODIFIER|||||DLC1|processed_transcript|CODING|ENST00000517868|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:1:0:0:0,0:34,35:0,0:0,0	94:1:0:0:4,4:89,93:0,0:0,0
8	13530315	.	T	C	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:1:0:0:0,0:0,0:0,0:33,35	94:2:0:0:0,0:10,10:0,0:82,84
8	13574520	.	G	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:0:0:0:0,0:0,0:31,31:0,0	116:0:0:0:7,7:0,0:109,109:0,0
8	14843235	.	C	G	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||312|SGCZ|protein_coding|CODING|ENST00000382080|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:0:0:0:0,0:36,36:0,0:1,1	123:1:0:0:0,0:116,117:6,6:0,0
8	15418467	rs181829769	T	C	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||289|TUSC3|protein_coding|CODING|ENST00000509380|1|1),INTRON(MODIFIER||||314|TUSC3|protein_coding|CODING|ENST00000506802|1|1),INTRON(MODIFIER||||347|TUSC3|protein_coding|CODING|ENST00000382020|1|1),INTRON(MODIFIER||||348|TUSC3|protein_coding|CODING|ENST00000503731|1|1),INTRON(MODIFIER|||||TUSC3|nonsense_mediated_decay|CODING|ENST00000351598|1|1),INTRON(MODIFIER|||||TUSC3|nonsense_mediated_decay|CODING|ENST00000510836|1|1),INTRON(MODIFIER|||||TUSC3|nonsense_mediated_decay|CODING|ENST00000511783|1|1),INTRON(MODIFIER|||||TUSC3|nonsense_mediated_decay|CODING|ENST00000515859|1|1),INTRON(MODIFIER|||||TUSC3|processed_transcript|CODING|ENST00000503191|2|1),UPSTREAM(MODIFIER|||||TUSC3|processed_transcript|CODING|ENST00000507400||1);RSPOS=15418467;GMAF=0.0774;dbSNPBuildID=135;SSR=0;SAO=0;VP=050000080005000016000100;GENEINFO=TUSC3:7991;WGT=1;VC=SNV;INT;ASP;KGPhase1;KGPROD;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	19:0:0:0:0,0:0,1:0,0:19,21	47:0:0:0:0,0:9,14:0,0:38,46
8	17043770	.	C	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||6|ZDHHC2|protein_coding|CODING|ENST00000523132||1),INTRON(MODIFIER||||129|ZDHHC2|protein_coding|CODING|ENST00000522184|2|1),INTRON(MODIFIER||||367|ZDHHC2|protein_coding|CODING|ENST00000262096|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:0:0:0:0,0:29,29:0,0:0,0	91:1:0:0:0,0:83,83:0,1:7,7
8	17202962	.	C	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||555|MTMR7|protein_coding|CODING|ENST00000521857|5|1),INTRON(MODIFIER||||660|MTMR7|protein_coding|CODING|ENST00000180173|5|1),INTRON(MODIFIER|||||MTMR7|nonsense_mediated_decay|CODING|ENST00000517317|4|1),INTRON(MODIFIER|||||MTMR7|processed_transcript|CODING|ENST00000518272|3|1),INTRON(MODIFIER|||||MTMR7|processed_transcript|CODING|ENST00000519122|1|1),INTRON(MODIFIER|||||MTMR7|processed_transcript|CODING|ENST00000523571|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:1:0:0:0,0:31,31:0,0:0,0	100:4:0:0:0,1:89,91:0,0:7,7
8	17684191	.	G	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-156K13.1|antisense|NON_CODING|ENST00000522768|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:0:0:0:0,0:0,0:33,33:0,0	101:0:0:0:0,0:0,0:89,89:12,12
8	18372798	.	C	T	.	PASS	NT=ref;QSS=32;QSS_NT=32;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	69:4:0:0:0,0:65,69:0,0:0,0	96:0:0:0:0,0:91,93:0,0:5,5
8	19864376	.	A	G	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:0:0:0:38,38:1,1:0,0:0,0	106:2:0:0:98,99:0,1:6,7:0,0
8	21169710	.	A	G	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||RP11-24P4.1|lincRNA|NON_CODING|ENST00000519996||1),DOWNSTREAM(MODIFIER|||||RP11-24P4.1|lincRNA|NON_CODING|ENST00000522755||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:0:0:0:40,41:0,0:0,0:0,0	78:7:0:0:64,71:0,0:7,10:0,0
8	21801712	.	A	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1087|XPO7|protein_coding|CODING|ENST00000252512|1|1),INTRON(MODIFIER||||1096|XPO7|protein_coding|CODING|ENST00000434536|1|1),INTRON(MODIFIER|||||XPO7|processed_transcript|CODING|ENST00000518017|1|1),INTRON(MODIFIER|||||XPO7|processed_transcript|CODING|ENST00000520754|1|1),INTRON(MODIFIER|||||XPO7|retained_intron|CODING|ENST00000519769|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	28:0:0:0:28,28:0,0:0,0:0,0	114:0:0:0:109,109:0,0:5,5:0,0
8	22356404	.	A	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||326|PPP3CC|protein_coding|CODING|ENST00000518852|4|1),INTRON(MODIFIER||||502|PPP3CC|protein_coding|CODING|ENST00000289963|4|1),INTRON(MODIFIER||||512|PPP3CC|protein_coding|CODING|ENST00000240139|4|1),INTRON(MODIFIER||||521|PPP3CC|protein_coding|CODING|ENST00000397775|4|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:0:0:0:30,30:0,0:0,0:0,0	118:6:0:0:101,105:0,0:11,14:0,0
8	24663811	.	C	G	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-624C23.1|antisense|NON_CODING|ENST00000519689|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	43:0:0:0:0,0:43,43:0,0:0,0	109:1:0:0:0,0:102,103:6,6:0,0
8	24960859	.	C	G	.	PASS	NT=ref;QSS=32;QSS_NT=32;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	67:1:0:0:0,0:66,70:0,0:0,0	119:4:0:0:1,1:104,124:10,11:0,0
8	25422074	.	A	T	.	PASS	NT=ref;QSS=24;QSS_NT=24;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	48:0:0:0:48,48:0,0:0,0:0,0	97:0:0:0:87,87:0,0:0,0:10,10
8	26853155	.	G	A	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	43:0:0:0:0,0:0,0:43,43:0,0	86:0:0:0:7,7:0,0:79,80:0,0
8	27157863	.	A	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||266|TRIM35|protein_coding|CODING|ENST00000521253|1|1),INTRON(MODIFIER||||493|TRIM35|protein_coding|CODING|ENST00000305364|1|1),INTRON(MODIFIER|||||TRIM35|retained_intron|CODING|ENST00000519219|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:0:0:0:33,34:0,0:0,0:0,0	104:1:0:0:97,98:0,0:0,0:6,6
8	27708961	.	A	C	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	41:0:0:0:41,41:0,0:0,0:0,0	113:0:0:0:100,101:13,13:0,0:0,0
8	30104959	.	C	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=DOWNSTREAM(MODIFIER|||||CTD-2345M20.2|processed_pseudogene|NON_CODING|ENST00000519722||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	49:1:0:0:0,0:48,51:0,0:0,1	118:3:0:0:0,0:107,122:0,0:8,12
8	30347125	.	G	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||115|RBPMS|protein_coding|CODING|ENST00000519647|4|1),INTRON(MODIFIER||||115|RBPMS|protein_coding|CODING|ENST00000520161|4|1),INTRON(MODIFIER||||120|RBPMS|protein_coding|CODING|ENST00000520191|4|1),INTRON(MODIFIER||||153|RBPMS|protein_coding|CODING|ENST00000538486|4|1),INTRON(MODIFIER||||196|RBPMS|protein_coding|CODING|ENST00000320203|4|1),INTRON(MODIFIER||||196|RBPMS|protein_coding|CODING|ENST00000397323|4|1),INTRON(MODIFIER||||204|RBPMS|protein_coding|CODING|ENST00000287771|4|1),INTRON(MODIFIER||||219|RBPMS|protein_coding|CODING|ENST00000339877|4|1),INTRON(MODIFIER||||224|RBPMS|protein_coding|CODING|ENST00000517860|4|1),INTRON(MODIFIER||||48|RBPMS|protein_coding|CODING|ENST00000523115|4|1),INTRON(MODIFIER|||||RBPMS|nonsense_mediated_decay|CODING|ENST00000522694|1|1),INTRON(MODIFIER|||||RBPMS|processed_transcript|CODING|ENST00000522708|4|1),INTRON(MODIFIER|||||RBPMS|processed_transcript|CODING|ENST00000523717|7|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	46:1:0:0:0,0:0,0:44,45:1,1	89:1:0:0:0,0:1,1:80,81:7,7
8	31389889	.	A	T	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	42:0:0:0:41,41:1,1:0,0:0,0	104:1:0:0:91,91:0,0:0,0:12,13
8	32581273	.	T	A	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=TT->AT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER||||100|NRG1|protein_coding|CODING|ENST00000518084|1|1),INTRON(MODIFIER||||127|NRG1|protein_coding|CODING|ENST00000522402|1|1),INTRON(MODIFIER||||134|NRG1|protein_coding|CODING|ENST00000519240|1|1),INTRON(MODIFIER||||196|NRG1|protein_coding|CODING|ENST00000523041|1|1),INTRON(MODIFIER||||247|NRG1|protein_coding|CODING|ENST00000341377|5|1),INTRON(MODIFIER||||296|NRG1|protein_coding|CODING|ENST00000520502|1|1),INTRON(MODIFIER||||420|NRG1|protein_coding|CODING|ENST00000523079|5|1),INTRON(MODIFIER||||422|NRG1|protein_coding|CODING|ENST00000520407|3|1),INTRON(MODIFIER||||462|NRG1|protein_coding|CODING|ENST00000521670|5|1),INTRON(MODIFIER||||480|NRG1|protein_coding|CODING|ENST00000518104|4|1),INTRON(MODIFIER||||483|NRG1|protein_coding|CODING|ENST00000539990|1|1),INTRON(MODIFIER||||590|NRG1|protein_coding|CODING|ENST00000519301|3|1),INTRON(MODIFIER||||611|NRG1|protein_coding|CODING|ENST00000287845|3|1),INTRON(MODIFIER||||637|NRG1|protein_coding|CODING|ENST00000287842|5|1),INTRON(MODIFIER||||640|NRG1|protein_coding|CODING|ENST00000287840|5|1),INTRON(MODIFIER||||640|NRG1|protein_coding|CODING|ENST00000405005|6|1),INTRON(MODIFIER||||645|NRG1|protein_coding|CODING|ENST00000356819|5|1),INTRON(MODIFIER||||648|NRG1|protein_coding|CODING|ENST00000338921|5|1),INTRON(MODIFIER||||713|NRG1|protein_coding|CODING|ENST00000523534|5|1),INTRON(MODIFIER|||||NRG1|retained_intron|CODING|ENST00000522569|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:3:0:0:0,2:0,0:1,2:29,29	86:17:0:0:13,25:0,0:3,5:53,57
8	33515828	.	G	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-317N12.1|lincRNA|NON_CODING|ENST00000523063|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	49:4:0:0:0,0:0,1:45,74:0,0	101:6:0:0:0,0:5,9:90,127:0,1
8	34076197	.	G	A	.	PASS	NT=ref;QSS=23;QSS_NT=23;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	47:0:0:0:0,0:1,1:46,49:0,0	109:0:0:0:8,9:0,0:101,106:0,0
8	34076205	.	A	G	.	PASS	NT=ref;QSS=25;QSS_NT=25;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	50:0:0:0:50,53:0,0:0,0:0,0	108:0:0:0:99,103:0,0:9,11:0,0
8	34099746	.	A	G	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP1-84O15.2|lincRNA|NON_CODING|ENST00000522460|2|1),INTRON(MODIFIER|||||RP11-431M3.2|lincRNA|NON_CODING|ENST00000518178|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:1:1:0:38,40:0,0:0,0:0,0	114:2:0:0:104,107:0,0:8,8:0,0
8	34269338	.	T	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:0:0:0:0,0:0,0:0,0:33,33	105:0:0:0:10,10:0,0:0,0:95,96
8	34615183	.	T	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	28:0:0:0:0,0:0,0:0,0:28,29	101:0:0:0:0,0:0,0:5,5:96,96
8	35025869	.	C	T	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:0:0:0:0,0:39,40:0,0:0,0	104:0:0:0:0,0:94,95:0,0:10,10
8	35234019	.	C	G	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||884|UNC5D|protein_coding|CODING|ENST00000287272|1|1),INTRON(MODIFIER||||886|UNC5D|protein_coding|CODING|ENST00000420357|1|1),INTRON(MODIFIER||||953|UNC5D|protein_coding|CODING|ENST00000404895|1|1),INTRON(MODIFIER||||958|UNC5D|protein_coding|CODING|ENST00000416672|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:0:0:0:1,1:38,38:0,0:0,0	107:0:0:0:0,0:99,99:8,8:0,0
8	35547090	.	A	T	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||884|UNC5D|protein_coding|CODING|ENST00000287272|6|1),INTRON(MODIFIER||||886|UNC5D|protein_coding|CODING|ENST00000420357|6|1),INTRON(MODIFIER||||948|UNC5D|protein_coding|CODING|ENST00000453357|7|1),INTRON(MODIFIER||||953|UNC5D|protein_coding|CODING|ENST00000404895|7|1),INTRON(MODIFIER||||958|UNC5D|protein_coding|CODING|ENST00000416672|7|1),INTRON(MODIFIER|||||UNC5D|retained_intron|CODING|ENST00000474634|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:0:0:0:36,36:0,0:0,0:0,0	112:0:0:0:106,106:0,0:0,0:6,6
8	35970982	.	G	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:1:0:0:0,0:0,0:31,32:0,0	116:1:0:0:0,0:13,14:102,103:0,0
8	36938025	.	G	A	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:0:0:0:0,0:0,0:40,40:0,0	127:0:0:0:12,12:0,0:115,117:0,0
8	38247011	.	C	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||115|LETM2|protein_coding|CODING|ENST00000527334|2|1),INTRON(MODIFIER||||141|LETM2|protein_coding|CODING|ENST00000526356|2|1),INTRON(MODIFIER||||173|LETM2|protein_coding|CODING|ENST00000519476|2|1),INTRON(MODIFIER||||396|LETM2|protein_coding|CODING|ENST00000297720|2|1),INTRON(MODIFIER||||443|LETM2|protein_coding|CODING|ENST00000524874|2|1),INTRON(MODIFIER||||444|LETM2|protein_coding|CODING|ENST00000523983|2|1),INTRON(MODIFIER||||491|LETM2|protein_coding|CODING|ENST00000379957|2|1),INTRON(MODIFIER|||||LETM2|nonsense_mediated_decay|CODING|ENST00000518883|2|1),INTRON(MODIFIER|||||LETM2|nonsense_mediated_decay|CODING|ENST00000523268|2|1),INTRON(MODIFIER|||||LETM2|retained_intron|CODING|ENST00000518121|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:0:0:0:0,0:32,32:0,0:0,0	115:2:0:0:6,6:107,109:0,0:0,0
8	38434452	.	G	A	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:0:0:0:0,0:0,0:35,36:0,0	99:1:0:0:5,5:0,1:93,93:0,0
8	38529250	.	T	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:0:0:0:0,0:0,0:0,0:32,32	107:1:0:0:0,0:9,9:0,0:97,98
8	39038254	.	T	C	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||629|ADAM32|protein_coding|CODING|ENST00000519315|10|1),INTRON(MODIFIER||||688|ADAM32|protein_coding|CODING|ENST00000437682|9|1),INTRON(MODIFIER||||787|ADAM32|protein_coding|CODING|ENST00000379907|10|1),INTRON(MODIFIER|||||ADAM32|retained_intron|CODING|ENST00000518259|9|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:1:0:0:0,0:0,0:0,0:38,39	98:5:0:0:0,0:7,10:2,5:84,84
8	39381965	.	C	T	.	PASS	NT=ref;QSS=26;QSS_NT=26;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||ADAM3A|processed_transcript|NON_CODING|ENST00000424066||1),UPSTREAM(MODIFIER|||||ADAM3A|processed_transcript|NON_CODING|ENST00000460383||1),UPSTREAM(MODIFIER|||||ADAM3A|processed_transcript|NON_CODING|ENST00000474764||1),UPSTREAM(MODIFIER|||||ADAM3A|processed_transcript|NON_CODING|ENST00000481351||1),UPSTREAM(MODIFIER|||||ADAM3A|processed_transcript|NON_CODING|ENST00000484602||1),UPSTREAM(MODIFIER|||||ADAM3A|processed_transcript|NON_CODING|ENST00000490268||1),UPSTREAM(MODIFIER|||||ADAM3A|processed_transcript|NON_CODING|ENST00000495171||1),UPSTREAM(MODIFIER|||||ADAM3A|processed_transcript|NON_CODING|ENST00000497806||1),UPSTREAM(MODIFIER|||||ADAM3A|unitary_pseudogene|NON_CODING|ENST00000461344||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	53:0:0:0:2,2:51,51:0,0:0,0	113:0:0:0:1,1:98,98:0,0:14,14
8	40884434	.	G	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	28:2:0:0:0,0:0,0:26,28:0,0	62:6:0:0:8,9:0,0:48,56:0,0
8	40956834	.	G	A	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	44:0:0:0:0,0:0,0:44,44:0,0	122:2:0:0:5,6:0,0:115,116:0,0
8	41013755	.	C	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	42:0:0:0:0,0:40,40:1,1:1,1	108:1:0:0:4,4:103,104:0,0:0,0
8	42820270	.	C	G	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||718|HOOK3|protein_coding|CODING|ENST00000307602|9|1),INTRON(MODIFIER|||||HOOK3|retained_intron|CODING|ENST00000527306|9|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:0:0:0:0,0:37,37:0,0:0,0	110:2:0:0:1,1:99,101:8,8:0,0
8	43428756	.	G	T	.	PASS	NT=ref;QSS=23;QSS_NT=23;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	51:6:0:0:0,1:0,1:45,53:0,0	135:14:0:0:1,3:0,0:115,133:5,7
8	43431137	.	A	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AC;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:1:0:0:34,53:0,0:0,0:0,0	120:3:0:0:109,182:8,17:0,1:0,0
8	43447678	.	A	G	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	42:0:0:0:42,45:0,0:0,0:0,0	119:1:0:0:113,120:0,0:5,8:0,0
8	43467870	.	G	T	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	49:8:0:0:0,0:0,0:41,64:0,0	120:26:0:0:0,3:0,0:88,142:6,10
8	43496064	.	C	G	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:0:0:0:1,1:35,35:0,0:0,0	96:0:0:0:0,0:90,92:6,11:0,0
8	43532315	.	A	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||RP11-643N23.2|processed_pseudogene|NON_CODING|ENST00000517972||1),INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||RP11-643N23.1|processed_pseudogene|NON_CODING|ENST00000519417||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	46:0:0:0:46,46:0,0:0,0:0,0	118:1:0:0:111,114:0,0:6,7:0,0
8	43652660	.	C	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	65:8:0:0:0,1:57,113:0,0:0,3	131:20:0:0:0,1:105,235:0,0:6,13
8	43746536	.	T	C	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	55:5:1:0:0,0:0,2:0,0:50,116	147:19:0:0:0,0:7,20:0,0:121,301
8	43766317	.	A	T	.	PASS	NT=ref;QSS=34;QSS_NT=34;SGT=AA->AT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	99:2:0:0:95,253:2,13:0,0:0,10	205:12:0:0:181,519:0,22:1,1:11,23
8	43825274	.	A	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	47:0:0:0:47,63:0,0:0,0:0,2	87:0:0:0:79,121:1,1:1,1:6,10
8	46839189	.	T	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	25:1:0:0:0,0:0,0:0,0:24,52	68:1:0:0:10,13:0,0:0,0:57,108
8	46846208	.	G	C	.	PASS	NT=ref;QSS=29;QSS_NT=29;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	60:1:0:0:0,0:0,0:59,102:0,1	204:2:0:0:0,0:20,22:181,294:1,1
8	49954211	.	T	C	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	59:2:0:0:0,0:0,1:0,0:57,58	107:8:0:0:0,0:7,9:0,0:92,99
8	50449230	.	T	A	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||65|RP11-738G5.2|protein_coding|CODING|ENST00000520800|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	14:0:0:0:0,0:0,0:0,0:14,17	53:1:0:0:13,19:0,0:0,0:39,52
8	50449232	rs58087139	A	T	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||65|RP11-738G5.2|protein_coding|CODING|ENST00000520800|3|1);RSPOS=50449232;dbSNPBuildID=129;SSR=0;SAO=0;VP=050000000001000002000100;WGT=1;VC=SNV;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	16:0:0:0:16,19:0,0:0,0:0,0	53:1:0:0:38,50:0,0:0,0:14,21
8	50761772	.	A	C	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:0:0:0:36,36:0,0:0,0:0,0	101:2:0:0:89,92:10,10:0,0:0,0
8	52895000	.	G	A	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-546K22.1|lincRNA|NON_CODING|ENST00000521188|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:0:0:0:0,0:0,0:39,39:0,0	112:1:0:0:5,6:0,0:106,106:0,0
8	53314300	.	A	T	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||ST18|processed_transcript|CODING|ENST00000520811||1),DOWNSTREAM(MODIFIER|||||ST18|processed_transcript|CODING|ENST00000522102||1),DOWNSTREAM(MODIFIER|||||ST18|processed_transcript|CODING|ENST00000524183||1),INTRON(MODIFIER||||1047|ST18|protein_coding|CODING|ENST00000276480|2|1),INTRON(MODIFIER||||619|ST18|protein_coding|CODING|ENST00000517580|2|1),INTRON(MODIFIER|||||ST18|processed_transcript|CODING|ENST00000519201|2|1),INTRON(MODIFIER|||||ST18|processed_transcript|CODING|ENST00000521549|2|1),INTRON(MODIFIER|||||ST18|retained_intron|CODING|ENST00000520279|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:0:0:0:37,37:0,0:0,0:0,0	98:0:0:0:87,88:0,0:0,0:11,11
8	53345752	.	G	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||ST18|retained_intron|CODING|ENST00000523652|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	28:0:0:0:0,0:0,0:28,29:0,0	89:0:0:0:7,7:0,0:81,81:1,1
8	54423229	.	C	A	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||RP11-400K9.4|lincRNA|NON_CODING|ENST00000426023||1),INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||RP11-400K9.3|lincRNA|NON_CODING|ENST00000521930||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	48:0:0:0:0,0:48,48:0,0:0,0	119:1:0:0:8,9:109,109:1,1:0,0
8	55381471	rs13252479	T	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=55381471;GMAF=0.1236;dbSNPBuildID=121;SSR=0;SAO=0;VP=050100080005000116000100;GENEINFO=LOC100129098:100129098;WGT=1;VC=SNV;SLO;INT;ASP;GNO;KGPhase1;KGPROD;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:1:0:0:0,0:0,0:0,0:33,36	100:4:0:0:1,1:6,9:0,0:89,91
8	55587132	.	T	C	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-56A10.1|unprocessed_pseudogene|NON_CODING|ENST00000521465|5|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:0:0:0:0,0:0,0:0,0:39,40	117:0:0:0:0,0:9,9:0,0:108,108
8	56740177	.	A	C	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||853|TGS1|protein_coding|CODING|ENST00000260129||1),DOWNSTREAM(MODIFIER|||||TGS1|nonsense_mediated_decay|CODING|ENST00000523948||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:0:1:0:34,36:0,0:0,0:0,0	84:0:0:0:76,80:8,9:0,0:0,0
8	56763938	.	C	T	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	44:2:0:0:0,0:42,44:0,0:0,0	92:3:0:0:0,0:81,86:0,0:8,8
8	56763940	.	G	A	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	44:2:0:0:0,0:0,0:42,44:0,0	94:3:0:0:7,7:0,1:84,88:0,0
8	57184845	.	T	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	51:2:0:0:0,0:1,1:0,0:48,52	101:9:0:0:0,0:8,10:0,1:84,100
8	57304395	.	G	C	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||SDR16C6P|unitary_pseudogene|NON_CODING|ENST00000524136|1|1),UPSTREAM(MODIFIER|||||SDR16C6P|processed_transcript|NON_CODING|ENST00000517787||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	41:1:0:0:0,0:0,0:40,41:0,0	108:0:0:0:0,0:12,12:96,96:0,0
8	57646878	.	A	T	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:0:0:0:38,38:0,0:0,0:0,0	116:2:0:0:102,104:0,0:0,0:12,12
8	59019455	.	G	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||370|FAM110B|protein_coding|CODING|ENST00000361488|4|1),INTRON(MODIFIER|||||FAM110B|processed_transcript|CODING|ENST00000519262|3|1),INTRON(MODIFIER|||||FAM110B|processed_transcript|CODING|ENST00000520369|3|1),INTRON(MODIFIER|||||FAM110B|processed_transcript|CODING|ENST00000521413|3|1),INTRON(MODIFIER|||||FAM110B|processed_transcript|CODING|ENST00000522059|3|1),INTRON(MODIFIER|||||FAM110B|processed_transcript|CODING|ENST00000523486|2|1),UPSTREAM(MODIFIER|||||RP11-648L3.2|lincRNA|NON_CODING|ENST00000518536||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:0:0:0:0,0:0,0:29,29:0,0	108:2:0:0:0,0:0,0:101,105:5,5
8	59574155	rs113885233	G	A	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||snoU13|snoRNA|NON_CODING|ENST00000459488||1),INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER||||917|NSMAF|protein_coding|CODING|ENST00000038176||1),UPSTREAM(MODIFIER||||948|NSMAF|protein_coding|CODING|ENST00000427130||1),UPSTREAM(MODIFIER|||||NSMAF|nonsense_mediated_decay|CODING|ENST00000518159||1),UPSTREAM(MODIFIER|||||NSMAF|nonsense_mediated_decay|CODING|ENST00000518229||1),UPSTREAM(MODIFIER|||||NSMAF|retained_intron|CODING|ENST00000519871||1),UPSTREAM(MODIFIER|||||NSMAF|retained_intron|CODING|ENST00000522645||1);RSPOS=59574155;dbSNPBuildID=132;SSR=0;SAO=0;VP=050000000001000102000100;WGT=1;VC=SNV;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:0:0:0:0,0:0,0:40,40:0,0	82:1:0:0:5,5:0,0:76,77:0,0
8	59737495	.	T	C	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||526|TOX|protein_coding|CODING|ENST00000361421|6|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:0:0:0:0,0:0,0:0,0:35,35	110:4:0:0:0,0:8,8:0,0:98,102
8	60618368	.	C	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:0:0:0:0,0:31,31:0,0:0,0	99:0:0:0:4,4:94,94:1,1:0,0
8	60764523	.	G	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:0:0:0:0,0:0,0:30,30:0,0	110:3:0:0:0,0:0,0:102,104:5,6
8	61120562	.	T	C	.	PASS	NT=ref;QSS=23;QSS_NT=23;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||CA8|retained_intron|CODING|ENST00000524872||1),INTRON(MODIFIER||||290|CA8|protein_coding|CODING|ENST00000317995|8|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	46:0:0:0:0,0:0,0:0,0:46,46	125:0:1:0:0,0:6,6:0,0:119,119
8	61543952	rs2981279	C	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=DOWNSTREAM(MODIFIER|||||RP11-91I20.3|lincRNA|NON_CODING|ENST00000526470||1),DOWNSTREAM(MODIFIER|||||RP11-91I20.3|lincRNA|NON_CODING|ENST00000532768||1),INTERGENIC(MODIFIER||||||||||1);RSPOS=61543952;RV;dbSNPBuildID=101;SSR=0;SAO=0;VP=050100000011040102000100;WGT=1;VC=SNV;SLO;OTH;VLD;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:2:1:0:0,0:31,39:0,0:0,1	81:0:0:0:0,0:72,79:0,0:9,11
8	63261831	.	C	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||100|NKAIN3|protein_coding|CODING|ENST00000524201|1|1),INTRON(MODIFIER||||197|NKAIN3|protein_coding|CODING|ENST00000328472|1|1),INTRON(MODIFIER||||197|NKAIN3|protein_coding|CODING|ENST00000523211|1|1),INTRON(MODIFIER|||||NKAIN3|processed_transcript|CODING|ENST00000519049|2|1),INTRON(MODIFIER|||||NKAIN3|processed_transcript|CODING|ENST00000523367|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:0:0:0:0,0:29,29:0,0:0,0	97:0:0:0:0,0:89,89:8,8:0,0
8	63315986	.	G	T	.	PASS	NT=ref;QSS=26;QSS_NT=26;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||100|NKAIN3|protein_coding|CODING|ENST00000524201|1|1),INTRON(MODIFIER||||197|NKAIN3|protein_coding|CODING|ENST00000328472|1|1),INTRON(MODIFIER||||197|NKAIN3|protein_coding|CODING|ENST00000523211|1|1),INTRON(MODIFIER|||||NKAIN3|processed_transcript|CODING|ENST00000519049|2|1),INTRON(MODIFIER|||||NKAIN3|processed_transcript|CODING|ENST00000523367|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	52:0:0:0:0,0:0,0:52,52:0,0	93:1:0:0:0,0:0,0:85,86:7,7
8	64433206	.	T	C	.	PASS	NT=ref;QSS=24;QSS_NT=24;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	46:0:0:0:0,0:0,0:0,0:46,46	80:1:0:0:0,0:8,8:0,1:71,71
8	65833083	.	T	C	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:0:0:0:0,0:0,0:0,0:39,39	122:1:0:0:0,0:12,12:0,0:109,110
8	65930868	rs116141275	C	T	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=65930868;GMAF=0.0018;dbSNPBuildID=132;SSR=0;SAO=0;VP=050000000005040014000100;WGT=1;VC=SNV;ASP;VLD;KGPhase1;KGPROD	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	42:0:0:0:0,0:42,42:0,0:0,0	89:1:0:0:0,0:79,80:0,0:9,9
8	66261958	.	C	A	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:0:0:0:0,0:39,39:0,0:0,0	107:1:0:0:5,5:100,101:1,1:0,0
8	67606250	.	A	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||496|SGK3|protein_coding|CODING|ENST00000519289|3|1),INTRON(MODIFIER|||||SGK3|processed_transcript|CODING|ENST00000520044|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	49:1:0:0:48,49:0,0:0,0:0,0	119:1:0:0:112,112:0,1:6,6:0,0
8	68388065	.	T	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||193|CPA6|protein_coding|CODING|ENST00000297769|8|1),INTRON(MODIFIER||||437|CPA6|protein_coding|CODING|ENST00000297770|8|1),INTRON(MODIFIER|||||CPA6|nonsense_mediated_decay|CODING|ENST00000479862|7|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	17:3:0:0:0,1:0,0:0,0:14,22	44:4:0:0:0,0:8,9:0,0:32,50
8	68758674	.	G	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||NDUFS5P6|processed_pseudogene|NON_CODING|ENST00000529136||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	49:0:0:0:1,1:0,0:48,48:0,0	119:3:0:0:7,7:0,0:109,110:0,2
8	70254465	.	G	T	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:0:0:0:0,0:0,0:40,40:0,0	111:1:0:0:0,0:0,0:101,102:9,9
8	70800310	.	G	A	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	42:0:0:0:0,0:0,0:42,42:0,0	106:4:0:0:7,7:0,0:95,99:0,0
8	70800317	.	G	T	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	41:1:0:0:0,0:0,0:40,41:0,0	102:5:0:0:0,0:0,0:90,94:7,8
8	72532359	.	A	T	.	PASS	NT=ref;QSS=23;QSS_NT=23;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:1:0:0:31,32:0,0:0,0:0,0	91:1:0:0:75,75:0,0:0,1:15,15
8	73067903	rs4236994	C	G	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=73067903;dbSNPBuildID=111;SSR=0;SAO=0;VP=050100000005000102000100;WGT=1;VC=SNV;SLO;ASP;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:0:0:0:0,0:33,33:0,0:0,0	100:1:0:0:0,0:93,95:6,6:0,0
8	74062172	.	A	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	25:0:0:0:25,29:0,0:0,0:0,0	71:2:0:0:60,83:1,1:8,14:0,1
8	76454511	.	G	T	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||408|HNF4G|protein_coding|CODING|ENST00000354370|2|1),INTRON(MODIFIER||||445|HNF4G|protein_coding|CODING|ENST00000396423|1|1),INTRON(MODIFIER|||||HNF4G|processed_transcript|CODING|ENST00000396419|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	43:0:0:0:0,0:0,0:43,43:0,0	112:0:0:0:0,0:0,0:106,106:6,7
8	76561085	.	T	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	27:0:0:0:0,0:0,0:0,0:27,27	98:0:0:0:12,12:0,0:0,0:86,86
8	77331259	.	G	T	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-706J10.1|lincRNA|NON_CODING|ENST00000518732|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:0:0:0:0,0:0,0:36,36:0,0	113:3:0:0:0,0:0,0:104,107:6,6
8	77834622	.	T	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	23:4:0:0:0,0:0,0:0,0:19,23	78:21:0:0:0,0:12,12:0,0:45,67
8	78217161	.	A	G	.	PASS	NT=ref;QSS=23;QSS_NT=23;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	46:0:0:0:45,45:1,1:0,0:0,0	113:0:0:0:103,103:0,0:10,10:0,0
8	78502183	.	A	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-38H17.1|lincRNA|NON_CODING|ENST00000518706|7|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	28:0:0:0:28,28:0,0:0,0:0,0	117:1:0:0:106,107:0,0:10,10:0,0
8	78588593	.	C	G	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:0:0:0:0,0:32,32:0,0:0,0	91:0:0:0:0,0:85,85:6,6:0,0
8	80029599	.	A	G	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:0:0:0:38,39:0,0:0,0:0,0	85:2:0:0:77,78:0,0:6,7:0,0
8	81874682	.	C	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:0:0:0:0,0:34,34:0,0:0,0	90:1:0:0:0,0:80,81:0,0:9,9
8	83477362	.	A	G	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-653B10.1|lincRNA|NON_CODING|ENST00000522776|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:1:0:0:39,40:0,0:0,0:0,0	90:0:0:0:80,80:1,1:9,9:0,0
8	83804596	rs117304970	C	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-731N10.1|lincRNA|NON_CODING|ENST00000522123|2|1);RSPOS=83804596;GMAF=0.3814;dbSNPBuildID=132;SSR=0;SAO=0;VP=050000000005070016000100;WGT=1;VC=SNV;ASP;VLD;G5A;G5;KGPhase1;KGPROD;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	27:0:0:0:0,0:27,27:0,0:0,0	105:0:0:0:8,8:97,97:0,0:0,0
8	84161165	.	G	A	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:0:0:0:0,0:0,0:35,35:0,0	90:0:0:0:7,7:0,0:83,84:0,0
8	84545506	.	C	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	46:0:0:0:1,1:45,45:0,0:0,0	120:0:0:0:9,9:110,110:0,0:1,1
8	84593603	.	G	A	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:0:0:0:0,0:0,0:37,37:0,0	108:0:0:0:8,8:0,0:99,99:1,1
8	85238427	.	T	G	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||280|RALYL|protein_coding|CODING|ENST00000518566|1|1),INTRON(MODIFIER||||291|RALYL|protein_coding|CODING|ENST00000521268|1|1),INTRON(MODIFIER||||291|RALYL|protein_coding|CODING|ENST00000521695|1|1),INTRON(MODIFIER||||291|RALYL|protein_coding|CODING|ENST00000522455|1|1),INTRON(MODIFIER||||304|RALYL|protein_coding|CODING|ENST00000517638|1|1),INTRON(MODIFIER||||46|RALYL|protein_coding|CODING|ENST00000522647|1|1),INTRON(MODIFIER||||84|RALYL|protein_coding|CODING|ENST00000517988|1|1),INTRON(MODIFIER||||84|RALYL|protein_coding|CODING|ENST00000522613|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:0:0:0:0,0:0,0:0,0:31,31	119:1:0:0:0,0:0,0:16,16:102,103
8	86753828	.	G	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=DOWNSTREAM(MODIFIER||||675|REXO1L2P|protein_coding|CODING|ENST00000425429||1),DOWNSTREAM(MODIFIER||||675|REXO1L2P|protein_coding|CODING|ENST00000540724||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	113:1:0:0:2,3:0,0:110,115:0,0	259:3:0:0:13,14:0,0:243,261:0,0
8	88277039	.	T	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||436|CNBD1|protein_coding|CODING|ENST00000518476|6|1),INTRON(MODIFIER|||||CNBD1|processed_transcript|CODING|ENST00000522427|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:0:0:0:0,0:0,0:0,0:31,31	118:1:0:0:7,8:0,0:1,1:109,112
8	89337373	.	A	G	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||167|MMP16|protein_coding|CODING|ENST00000522726|2|1),INTRON(MODIFIER||||607|MMP16|protein_coding|CODING|ENST00000286614|1|1),INTRON(MODIFIER|||||MMP16|processed_transcript|CODING|ENST00000544227|1|1),INTRON(MODIFIER|||||MMP16|retained_intron|CODING|ENST00000520568|1|1),UPSTREAM(MODIFIER|||||RP11-586K2.1|processed_transcript|NON_CODING|ENST00000520849||1),UPSTREAM(MODIFIER|||||RP11-586K2.1|processed_transcript|NON_CODING|ENST00000521433||1),UPSTREAM(MODIFIER|||||RP11-586K2.1|processed_transcript|NON_CODING|ENST00000523254||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:0:0:0:39,39:0,0:0,0:0,0	107:1:0:0:94,95:0,0:12,12:0,0
8	89870469	.	C	A	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	44:0:0:0:0,0:44,44:0,0:0,0	96:0:0:0:7,7:89,90:0,0:0,0
8	91663513	.	T	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||RP11-68L18.1|processed_transcript|NON_CODING|ENST00000519233||1),EXON(MODIFIER|||||RP11-68L18.1|processed_transcript|NON_CODING|ENST00000501194|2|1),INTRON(MODIFIER||||119|TMEM64|protein_coding|CODING|ENST00000519519|4|1),INTRON(MODIFIER||||50|TMEM64|protein_coding|CODING|ENST00000521852|3|1),INTRON(MODIFIER|||||RP11-68L18.1|processed_transcript|NON_CODING|ENST00000522132|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:1:0:0:0,0:0,0:0,0:35,36	93:0:0:0:0,0:5,5:1,1:87,87
8	92899240	.	T	A	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-122C21.1|lincRNA|NON_CODING|ENST00000518416|1|1),INTRON(MODIFIER|||||RP11-122C21.1|lincRNA|NON_CODING|ENST00000521199|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:0:0:0:0,0:0,0:0,0:37,37	122:2:0:0:8,8:0,0:0,0:112,114
8	93038845	.	T	C	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||100|RUNX1T1|protein_coding|CODING|ENST00000521733|2|1),INTRON(MODIFIER||||118|RUNX1T1|protein_coding|CODING|ENST00000523168|2|1),INTRON(MODIFIER||||119|RUNX1T1|protein_coding|CODING|ENST00000517792|1|1),INTRON(MODIFIER||||119|RUNX1T1|protein_coding|CODING|ENST00000520583|2|1),INTRON(MODIFIER||||134|RUNX1T1|protein_coding|CODING|ENST00000517919|2|1),INTRON(MODIFIER||||155|RUNX1T1|protein_coding|CODING|ENST00000522467|3|1),INTRON(MODIFIER||||168|RUNX1T1|protein_coding|CODING|ENST00000519847|3|1),INTRON(MODIFIER||||228|RUNX1T1|protein_coding|CODING|ENST00000518992|2|1),INTRON(MODIFIER||||25|RUNX1T1|protein_coding|CODING|ENST00000519061|3|1),INTRON(MODIFIER||||45|RUNX1T1|protein_coding|CODING|ENST00000518832|1|1),INTRON(MODIFIER||||47|RUNX1T1|protein_coding|CODING|ENST00000520428|3|1),INTRON(MODIFIER||||53|RUNX1T1|protein_coding|CODING|ENST00000518954|4|1),INTRON(MODIFIER||||567|RUNX1T1|protein_coding|CODING|ENST00000360348|1|1),INTRON(MODIFIER||||567|RUNX1T1|protein_coding|CODING|ENST00000520724|1|1),INTRON(MODIFIER||||577|RUNX1T1|protein_coding|CODING|ENST00000396218|1|1),INTRON(MODIFIER||||577|RUNX1T1|protein_coding|CODING|ENST00000518844|5|1),INTRON(MODIFIER||||604|RUNX1T1|protein_coding|CODING|ENST00000265814|1|1),INTRON(MODIFIER||||604|RUNX1T1|protein_coding|CODING|ENST00000523629|2|1),INTRON(MODIFIER||||615|RUNX1T1|protein_coding|CODING|ENST00000436581|1|1),INTRON(MODIFIER||||68|RUNX1T1|protein_coding|CODING|ENST00000518317|2|1),INTRON(MODIFIER||||78|RUNX1T1|protein_coding|CODING|ENST00000518823|3|1),INTRON(MODIFIER||||84|RUNX1T1|protein_coding|CODING|ENST00000520974|3|1),INTRON(MODIFIER||||87|RUNX1T1|protein_coding|CODING|ENST00000521319|2|1),INTRON(MODIFIER||||90|RUNX1T1|protein_coding|CODING|ENST00000520556|1|1),INTRON(MODIFIER||||92|RUNX1T1|protein_coding|CODING|ENST00000521375|2|1),INTRON(MODIFIER|||||RUNX1T1|nonsense_mediated_decay|CODING|ENST00000517493|4|1),INTRON(MODIFIER|||||RUNX1T1|nonsense_mediated_decay|CODING|ENST00000519422|3|1),INTRON(MODIFIER|||||RUNX1T1|nonsense_mediated_decay|CODING|ENST00000519577|3|1),INTRON(MODIFIER|||||RUNX1T1|nonsense_mediated_decay|CODING|ENST00000521897|2|1),INTRON(MODIFIER|||||RUNX1T1|nonsense_mediated_decay|CODING|ENST00000521902|3|1),INTRON(MODIFIER|||||RUNX1T1|nonsense_mediated_decay|CODING|ENST00000524215|3|1),INTRON(MODIFIER|||||RUNX1T1|processed_transcript|CODING|ENST00000518256|3|1),INTRON(MODIFIER|||||RUNX1T1|processed_transcript|CODING|ENST00000520172|3|1),INTRON(MODIFIER|||||RUNX1T1|processed_transcript|CODING|ENST00000522065|2|1),INTRON(MODIFIER|||||RUNX1T1|processed_transcript|CODING|ENST00000522163|3|1),INTRON(MODIFIER|||||RUNX1T1|processed_transcript|CODING|ENST00000522316|1|1),INTRON(MODIFIER|||||RUNX1T1|processed_transcript|CODING|ENST00000522860|4|1),INTRON(MODIFIER|||||RUNX1T1|retained_intron|CODING|ENST00000523290|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:1:0:0:0,0:0,0:0,0:37,38	107:2:0:0:0,0:7,7:2,2:96,99
8	93138871	.	A	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	20:1:0:0:17,18:1,1:1,1:0,0	50:1:0:0:34,34:14,15:1,1:0,0
8	93420453	.	C	G	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-700E23.2|lincRNA|NON_CODING|ENST00000518042|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:0:0:0:0,0:40,40:0,0:0,0	105:1:0:0:0,0:99,100:5,5:0,0
8	94064633	.	A	T	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:0:0:0:39,39:0,0:0,0:0,0	110:0:0:0:99,99:0,0:1,1:10,10
8	94684721	.	T	G	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||LINC00535|processed_transcript|NON_CODING|ENST00000501400|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	50:1:0:0:0,0:0,0:1,1:48,49	122:2:0:0:2,3:0,0:12,12:106,109
8	95061489	.	A	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	21:1:0:0:20,21:0,0:0,0:0,0	62:4:0:0:49,54:0,0:9,11:0,0
8	100574174	.	G	C	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1427|VPS13B|protein_coding|CODING|ENST00000395996|32|1),INTRON(MODIFIER||||3997|VPS13B|protein_coding|CODING|ENST00000357162|31|1),INTRON(MODIFIER||||4022|VPS13B|protein_coding|CODING|ENST00000358544|31|1),INTRON(MODIFIER|||||VPS13B|nonsense_mediated_decay|CODING|ENST00000496144|32|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:1:0:0:0,0:0,0:33,34:0,0	86:1:0:0:0,0:11,11:74,75:0,0
8	100614873	.	G	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER||||1427|VPS13B|protein_coding|CODING|ENST00000395996|34|1),INTRON(MODIFIER||||3997|VPS13B|protein_coding|CODING|ENST00000357162|33|1),INTRON(MODIFIER||||4022|VPS13B|protein_coding|CODING|ENST00000358544|33|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:0:0:0:0,1:0,0:39,39:0,0	104:0:0:0:6,6:0,0:98,99:0,0
8	100614935	.	G	A	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=GG->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER||||1427|VPS13B|protein_coding|CODING|ENST00000395996|34|1),INTRON(MODIFIER||||3997|VPS13B|protein_coding|CODING|ENST00000357162|33|1),INTRON(MODIFIER||||4022|VPS13B|protein_coding|CODING|ENST00000358544|33|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	49:0:0:0:0,1:0,0:48,48:1,1	119:0:0:0:6,6:0,0:112,113:1,1
8	100614958	.	A	T	.	PASS	NT=ref;QSS=23;QSS_NT=23;SGT=AA->AT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER||||1427|VPS13B|protein_coding|CODING|ENST00000395996|34|1),INTRON(MODIFIER||||3997|VPS13B|protein_coding|CODING|ENST00000357162|33|1),INTRON(MODIFIER||||4022|VPS13B|protein_coding|CODING|ENST00000358544|33|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	54:0:0:0:54,54:0,0:0,0:0,1	114:1:0:0:106,109:0,0:1,1:6,6
8	100614961	.	C	G	.	PASS	NT=ref;QSS=23;QSS_NT=23;SGT=CC->CG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER||||1427|VPS13B|protein_coding|CODING|ENST00000395996|34|1),INTRON(MODIFIER||||3997|VPS13B|protein_coding|CODING|ENST00000357162|33|1),INTRON(MODIFIER||||4022|VPS13B|protein_coding|CODING|ENST00000358544|33|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	54:0:0:0:0,0:54,54:0,1:0,0	116:1:0:0:0,0:109,112:6,6:0,0
8	101988321	.	C	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:0:0:0:0,0:30,33:0,0:0,1	102:0:0:0:0,0:94,98:7,7:1,1
8	101988325	rs200615439	G	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=101988325;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:0:0:0:0,0:1,1:28,33:0,0	104:0:0:0:0,0:0,1:95,98:9,10
8	102328228	.	T	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	49:1:0:0:0,0:0,1:0,0:48,49	113:2:0:0:0,0:6,6:0,0:105,107
8	102328263	.	C	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	48:0:0:0:0,0:48,48:0,0:0,1	105:0:0:0:0,0:99,99:0,0:6,6
8	102692446	.	A	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=AA->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:0:0:0:34,48:0,0:0,0:0,0	114:1:0:0:106,142:0,0:7,7:0,0
8	103368663	.	G	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||UBR5|retained_intron|CODING|ENST00000522327||1),INTRON(MODIFIER||||2792|UBR5|protein_coding|CODING|ENST00000521922|5|1),INTRON(MODIFIER||||2798|UBR5|protein_coding|CODING|ENST00000220959|5|1),INTRON(MODIFIER||||2799|UBR5|protein_coding|CODING|ENST00000520539|5|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:1:0:0:0,0:0,0:31,32:0,0	109:4:0:0:0,0:9,9:96,102:0,0
8	104560512	.	A	C	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1110|RIMS2|protein_coding|CODING|ENST00000504942|1|1),INTRON(MODIFIER||||1349|RIMS2|protein_coding|CODING|ENST00000406091|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	41:0:0:0:41,41:0,0:0,0:0,0	95:0:0:0:84,84:11,11:0,0:0,0
8	106139537	.	T	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-127H5.1|nonsense_mediated_decay|CODING|ENST00000518180|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:0:0:0:0,0:0,0:0,0:31,31	95:1:0:0:0,0:0,0:5,5:89,90
8	106585432	.	A	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1019|ZFPM2|protein_coding|CODING|ENST00000517361|2|1),INTRON(MODIFIER||||1019|ZFPM2|protein_coding|CODING|ENST00000520492|4|1),INTRON(MODIFIER||||1151|ZFPM2|protein_coding|CODING|ENST00000407775|4|1),INTRON(MODIFIER||||25|ZFPM2|protein_coding|CODING|ENST00000520027|4|1),INTRON(MODIFIER|||||ZFPM2|processed_transcript|CODING|ENST00000511341|4|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	27:0:0:0:27,27:0,0:0,0:0,0	106:0:0:0:99,100:7,7:0,0:0,0
8	107172344	.	A	T	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	48:0:0:0:47,47:1,1:0,0:0,0	85:1:0:0:80,81:0,0:0,0:4,4
8	107602803	.	C	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||294|OXR1|protein_coding|CODING|ENST00000452423|2|1),INTRON(MODIFIER||||846|OXR1|protein_coding|CODING|ENST00000445937|3|1),INTRON(MODIFIER||||846|OXR1|protein_coding|CODING|ENST00000531443|2|1),INTRON(MODIFIER||||873|OXR1|protein_coding|CODING|ENST00000517566|2|1),INTRON(MODIFIER||||874|OXR1|protein_coding|CODING|ENST00000442977|2|1),INTRON(MODIFIER||||98|OXR1|protein_coding|CODING|ENST00000517686|1|1),INTRON(MODIFIER|||||OXR1|processed_transcript|CODING|ENST00000521963|1|1),INTRON(MODIFIER|||||RP11-649G15.2|antisense|NON_CODING|ENST00000518591|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	48:0:0:0:0,0:46,46:1,1:1,1	101:2:0:0:0,0:90,92:1,1:8,8
8	108356689	.	G	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||29|ANGPT1|protein_coding|CODING|ENST00000520033||1),INTRON(MODIFIER||||497|ANGPT1|protein_coding|CODING|ENST00000297450|2|1),INTRON(MODIFIER||||498|ANGPT1|protein_coding|CODING|ENST00000517746|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:0:0:0:0,0:0,0:32,32:0,0	102:0:0:0:0,0:0,0:95,95:7,7
8	111814724	.	C	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:1:0:0:0,0:34,35:0,0:0,0	107:1:0:0:0,0:97,98:0,0:9,9
8	112668661	.	G	T	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:0:0:0:0,0:0,0:39,39:0,0	108:1:0:0:0,0:0,0:100,101:7,7
8	114771818	.	T	A	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:0:0:0:0,0:0,0:1,1:37,37	88:3:0:0:7,8:0,0:0,0:78,80
8	115343280	.	T	A	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:0:0:0:0,0:0,0:0,0:38,38	104:1:0:0:8,9:0,0:0,0:95,96
8	115661738	.	A	G	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:1:0:0:34,35:0,0:0,0:0,0	123:2:0:0:109,109:0,0:11,12:1,2
8	115864933	.	A	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:0:0:0:29,29:0,0:0,0:0,0	99:3:0:0:89,90:0,0:7,9:0,0
8	115911442	.	T	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:1:0:0:0,0:0,0:0,0:29,30	111:1:0:0:0,0:0,0:9,9:101,102
8	116562226	.	T	A	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1035|TRPS1|protein_coding|CODING|ENST00000519076|5|1),INTRON(MODIFIER||||1281|TRPS1|protein_coding|CODING|ENST00000220888|4|1),INTRON(MODIFIER||||1285|TRPS1|protein_coding|CODING|ENST00000520276|4|1),INTRON(MODIFIER||||1294|TRPS1|protein_coding|CODING|ENST00000395715|5|1),INTRON(MODIFIER||||902|TRPS1|protein_coding|CODING|ENST00000519674|4|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:0:0:0:0,0:0,0:0,0:37,37	113:0:0:0:7,7:0,0:0,0:106,106
8	116765708	.	G	A	.	PASS	NT=ref;QSS=26;QSS_NT=26;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||60|TRPS1|protein_coding|CODING|ENST00000422939|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	54:0:0:0:0,0:0,0:54,54:0,0	123:2:0:0:5,6:0,0:115,116:1,1
8	120590285	rs79992681	G	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||498|ENPP2|protein_coding|CODING|ENST00000522167|8|1),INTRON(MODIFIER||||863|ENPP2|protein_coding|CODING|ENST00000075322|19|1),INTRON(MODIFIER||||884|ENPP2|protein_coding|CODING|ENST00000427067|19|1),INTRON(MODIFIER||||888|ENPP2|protein_coding|CODING|ENST00000522826|19|1),INTRON(MODIFIER||||915|ENPP2|protein_coding|CODING|ENST00000259486|20|1),INTRON(MODIFIER|||||ENPP2|processed_transcript|CODING|ENST00000518109|1|1),INTRON(MODIFIER|||||ENPP2|processed_transcript|CODING|ENST00000524146|1|1),INTRON(MODIFIER|||||ENPP2|retained_intron|CODING|ENST00000523861|1|1);RSPOS=120590285;GMAF=0.0549;dbSNPBuildID=132;SSR=0;SAO=0;VP=050000080001030116000100;GENEINFO=ENPP2:5168;WGT=1;VC=SNV;INT;G5A;G5;GNO;KGPhase1;KGPROD;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:0:0:0:0,0:0,0:34,34:0,0	100:0:0:0:0,0:0,0:95,95:5,5
8	122590651	.	C	G	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	47:0:0:0:0,0:47,47:0,0:0,0	102:1:0:0:0,0:96,97:5,6:0,0
8	122913150	.	T	C	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-785H20.1|lincRNA|NON_CODING|ENST00000523550|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	43:0:0:0:0,0:0,0:0,0:43,44	113:0:0:0:0,0:11,11:0,0:102,102
8	123086842	.	G	A	.	PASS	NT=ref;QSS=24;QSS_NT=24;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-398G24.2|lincRNA|NON_CODING|ENST00000523792|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	47:0:0:0:0,0:0,0:47,47:0,0	98:1:0:0:6,6:0,0:91,92:0,0
8	124877996	.	G	A	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1857|FER1L6|protein_coding|CODING|ENST00000522917|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:0:0:0:0,0:1,1:37,38:0,0	110:0:0:0:8,8:1,2:101,105:0,0
8	125174519	.	A	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||FER1L6-AS2|antisense|NON_CODING|ENST00000520031|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:0:0:0:29,29:0,0:0,0:0,0	97:0:0:0:90,91:1,1:1,1:5,5
8	125763337	.	G	C	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:0:0:0:0,0:0,0:37,37:0,0	68:0:0:0:0,0:9,9:59,59:0,0
8	126339243	.	A	G	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||187|NSMCE2|protein_coding|CODING|ENST00000517315|4|1),INTRON(MODIFIER||||192|NSMCE2|protein_coding|CODING|ENST00000517532|5|1),INTRON(MODIFIER||||247|NSMCE2|protein_coding|CODING|ENST00000287437|5|1),INTRON(MODIFIER||||247|NSMCE2|protein_coding|CODING|ENST00000522563|4|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:2:0:0:33,35:0,0:0,0:0,0	117:4:0:0:98,103:1,1:14,14:0,0
8	126444616	.	G	T	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||206|TRIB1|protein_coding|CODING|ENST00000520847|1|1),INTRON(MODIFIER||||372|TRIB1|protein_coding|CODING|ENST00000311922|1|1),UPSTREAM(MODIFIER||||141|TRIB1|protein_coding|CODING|ENST00000519576||1),UPSTREAM(MODIFIER|||||TRIB1|processed_transcript|CODING|ENST00000521778||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:1:0:0:0,0:0,0:39,40:0,0	90:2:0:0:0,0:0,0:83,85:5,5
8	126509651	.	G	A	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-136O12.2|lincRNA|NON_CODING|ENST00000522815|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	43:0:0:0:0,0:0,0:43,44:0,0	104:0:0:0:7,7:0,0:97,97:0,0
8	131020213	.	A	G	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||MIR5194|miRNA|NON_CODING|ENST00000582634||1),INTRON(MODIFIER||||324|FAM49B|protein_coding|CODING|ENST00000401979|1|1),INTRON(MODIFIER||||324|FAM49B|protein_coding|CODING|ENST00000517654|1|1),INTRON(MODIFIER||||324|FAM49B|protein_coding|CODING|ENST00000519110|1|1),INTRON(MODIFIER||||324|FAM49B|protein_coding|CODING|ENST00000523509|1|1),INTRON(MODIFIER||||44|FAM49B|protein_coding|CODING|ENST00000522361|1|1),INTRON(MODIFIER||||64|FAM49B|protein_coding|CODING|ENST00000518167|1|1),INTRON(MODIFIER||||67|FAM49B|protein_coding|CODING|ENST00000519020|1|1),INTRON(MODIFIER||||92|FAM49B|protein_coding|CODING|ENST00000523993|1|1),INTRON(MODIFIER||||97|FAM49B|protein_coding|CODING|ENST00000518283|1|1),INTRON(MODIFIER|||||FAM49B|processed_transcript|CODING|ENST00000518285|1|1),INTRON(MODIFIER|||||FAM49B|processed_transcript|CODING|ENST00000518879|1|1),INTRON(MODIFIER|||||FAM49B|processed_transcript|CODING|ENST00000521223|1|1),INTRON(MODIFIER|||||FAM49B|processed_transcript|CODING|ENST00000522702|1|1),INTRON(MODIFIER|||||FAM49B|retained_intron|CODING|ENST00000523288|1|1),INTRON(MODIFIER|||||FAM49B|retained_intron|CODING|ENST00000523514|1|1),UPSTREAM(MODIFIER|||||U7|snRNA|NON_CODING|ENST00000517234||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	42:0:0:0:42,42:0,0:0,0:0,0	114:0:0:0:108,108:1,1:5,5:0,0
8	132284577	.	G	T	.	PASS	NT=ref;QSS=23;QSS_NT=23;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	48:1:0:0:1,1:0,0:46,48:0,0	106:1:0:0:0,0:0,0:96,97:9,9
8	132618084	.	C	T	.	PASS	NT=ref;QSS=26;QSS_NT=26;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	48:2:0:0:0,0:46,48:0,0:0,0	97:0:0:0:0,0:83,83:0,0:14,14
8	134226168	.	T	C	.	PASS	NT=ref;QSS=34;QSS_NT=34;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||122|WISP1|protein_coding|CODING|ENST00000519433|1|1),INTRON(MODIFIER||||155|WISP1|protein_coding|CODING|ENST00000517423|2|1),INTRON(MODIFIER||||195|WISP1|protein_coding|CODING|ENST00000377863|1|1),INTRON(MODIFIER||||280|WISP1|protein_coding|CODING|ENST00000220856|2|1),INTRON(MODIFIER||||367|WISP1|protein_coding|CODING|ENST00000250160|2|1),INTRON(MODIFIER|||||WISP1|nonsense_mediated_decay|CODING|ENST00000377862|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	89:1:0:0:0,0:1,1:0,0:87,122	294:12:1:0:1,2:12,21:2,2:267,378
8	134880069	.	C	G	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	44:0:0:0:0,0:44,44:0,0:0,0	105:1:0:0:0,0:96,97:8,8:0,0
8	135473612	.	C	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	48:0:0:0:0,0:47,47:0,0:1,1	107:4:0:0:1,2:94,95:1,2:7,8
8	135603187	.	C	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER||||1145|ZFAT|protein_coding|CODING|ENST00000520356|7|1),INTRON(MODIFIER||||1156|ZFAT|protein_coding|CODING|ENST00000429442|7|1),INTRON(MODIFIER||||1181|ZFAT|protein_coding|CODING|ENST00000523399|6|1),INTRON(MODIFIER||||1231|ZFAT|protein_coding|CODING|ENST00000520214|7|1),INTRON(MODIFIER||||1231|ZFAT|protein_coding|CODING|ENST00000520727|8|1),INTRON(MODIFIER||||1243|ZFAT|protein_coding|CODING|ENST00000377838|7|1),INTRON(MODIFIER|||||ZFAT|nonsense_mediated_decay|CODING|ENST00000523243|7|1),INTRON(MODIFIER|||||ZFAT|nonsense_mediated_decay|CODING|ENST00000523924|8|1),INTRON(MODIFIER|||||ZFAT|processed_transcript|CODING|ENST00000517307|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:0:0:0:0,0:38,38:0,0:0,0	100:1:0:0:0,0:95,96:0,0:4,4
8	135708144	.	G	A	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1145|ZFAT|protein_coding|CODING|ENST00000520356|1|1),INTRON(MODIFIER||||1156|ZFAT|protein_coding|CODING|ENST00000429442|1|1),INTRON(MODIFIER||||1181|ZFAT|protein_coding|CODING|ENST00000523399|1|1),INTRON(MODIFIER||||1231|ZFAT|protein_coding|CODING|ENST00000520214|1|1),INTRON(MODIFIER||||1231|ZFAT|protein_coding|CODING|ENST00000520727|1|1),INTRON(MODIFIER||||1243|ZFAT|protein_coding|CODING|ENST00000377838|1|1),INTRON(MODIFIER||||149|ZFAT|protein_coding|CODING|ENST00000518191|1|1),INTRON(MODIFIER|||||ZFAT|nonsense_mediated_decay|CODING|ENST00000523243|1|1),INTRON(MODIFIER|||||ZFAT|nonsense_mediated_decay|CODING|ENST00000523924|1|1),INTRON(MODIFIER|||||ZFAT|retained_intron|CODING|ENST00000522974|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:5:0:0:0,0:0,2:35,40:0,0	100:7:0:0:5,5:2,3:82,90:4,4
8	140101812	.	A	G	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:0:0:0:35,35:0,0:0,0:0,0	97:1:0:0:86,87:0,0:10,10:0,0
8	140296278	.	C	G	.	PASS	NT=ref;QSS=25;QSS_NT=25;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	49:0:0:0:0,0:49,49:0,0:0,0	100:2:0:0:0,0:91,92:7,8:0,0
8	140644650	.	C	T	.	PASS	NT=ref;QSS=24;QSS_NT=24;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||374|KCNK9|protein_coding|CODING|ENST00000303015|1|1),INTRON(MODIFIER||||374|KCNK9|protein_coding|CODING|ENST00000520439|1|1),INTRON(MODIFIER||||374|KCNK9|protein_coding|CODING|ENST00000522317|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	48:0:0:0:0,0:48,48:0,0:0,0	106:2:0:0:0,0:95,97:0,0:9,9
8	141443439	.	A	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER||||1139|TRAPPC9|protein_coding|CODING|ENST00000389327|4|1),INTRON(MODIFIER||||1148|TRAPPC9|protein_coding|CODING|ENST00000438773|4|1),INTRON(MODIFIER||||1246|TRAPPC9|protein_coding|CODING|ENST00000389328|4|1),INTRON(MODIFIER|||||TRAPPC9|retained_intron|CODING|ENST00000521944|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:0:0:0:40,40:0,0:0,0:0,0	116:5:0:0:106,111:0,0:5,5:0,0
8	142478550	rs58460041	T	C	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||AC100803.1|nonsense_mediated_decay|CODING|ENST00000521053|15|1),INTRON(MODIFIER|||||AC100803.1|nonsense_mediated_decay|CODING|ENST00000523857|16|1),INTRON(MODIFIER|||||AC100803.1|polymorphic_pseudogene|CODING|ENST00000430863|17|1);RSPOS=142478550;dbSNPBuildID=129;SSR=0;SAO=0;VP=05000008000500000e000100;GENEINFO=FLJ43860:389690;WGT=1;VC=SNV;INT;ASP;KGPilot123;KGPROD;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:0:0:0:0,0:0,0:0,0:37,37	59:1:0:0:0,0:6,6:0,0:52,53
8	142565284	.	G	A	.	PASS	NT=ref;QSS=26;QSS_NT=26;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	67:9:0:0:0,3:0,0:58,91:0,1	178:16:0:0:10,19:0,0:151,222:1,1
8	142723823	.	T	A	.	PASS	NT=ref;QSS=23;QSS_NT=23;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	89:19:2:0:0,2:0,1:1,1:69,134	221:51:11:0:9,19:1,6:1,5:159,343
8	143472345	.	T	C	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||134|TSNARE1|protein_coding|CODING|ENST00000518720|1|1),INTRON(MODIFIER||||149|TSNARE1|protein_coding|CODING|ENST00000520462|1|1),INTRON(MODIFIER||||277|TSNARE1|protein_coding|CODING|ENST00000519651|1|1),INTRON(MODIFIER||||512|TSNARE1|protein_coding|CODING|ENST00000524325|1|1),INTRON(MODIFIER||||513|TSNARE1|protein_coding|CODING|ENST00000307180|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:0:0:0:0,0:0,0:0,0:39,53	74:4:0:0:2,2:8,14:1,1:59,82
8	143510946	.	T	C	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:2:0:0:0,0:0,0:0,0:33,35	107:3:0:0:0,0:13,19:1,1:90,94
8	143755846	rs146194718	A	G	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||JRK|processed_transcript|NON_CODING|ENST00000587883||1),DOWNSTREAM(MODIFIER|||||JRK|processed_transcript|NON_CODING|ENST00000591180||1),INTRON(MODIFIER|||||JRK|processed_transcript|NON_CODING|ENST00000591357|1|1),INTRON(MODIFIER|||||PSCA|processed_transcript|CODING|ENST00000505305|1|1),INTRON(MODIFIER|||||PSCA|processed_transcript|CODING|ENST00000510969|1|1),UPSTREAM(MODIFIER|||||JRK|processed_transcript|NON_CODING|ENST00000422119||1),UPSTREAM(MODIFIER|||||JRK|processed_transcript|NON_CODING|ENST00000503272||1),UPSTREAM(MODIFIER|||||JRK|processed_transcript|NON_CODING|ENST00000512113||1);RSPOS=143755846;GMAF=0.0604;dbSNPBuildID=134;SSR=0;SAO=0;VP=050000080005000016000100;GENEINFO=PSCA:8000;WGT=1;VC=SNV;INT;ASP;KGPhase1;KGPROD;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	45:0:0:0:43,43:1,1:0,0:1,1	98:2:0:0:88,95:2,2:6,9:0,0
8	143836255	rs11783316	T	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER||||125|LYPD2|protein_coding|CODING|ENST00000359228||1);RSPOS=143836255;GMAF=0.2761;dbSNPBuildID=120;SSR=0;SAO=0;VP=050000000005040116000100;WGT=1;VC=SNV;ASP;VLD;GNO;KGPhase1;KGPROD;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	27:3:0:0:0,0:0,0:0,0:24,28	81:10:0:0:0,1:9,11:1,1:61,69
8	143846981	.	G	A	.	PASS	NT=ref;QSS=27;QSS_NT=27;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||131|LYNX1|protein_coding|CODING|ENST00000335822|3|1),INTRON(MODIFIER||||82|LYNX1|protein_coding|CODING|ENST00000523332|3|1),INTRON(MODIFIER||||87|LYNX1|protein_coding|CODING|ENST00000521396|1|1),INTRON(MODIFIER||||97|LYNX1|protein_coding|CODING|ENST00000317543|1|1),INTRON(MODIFIER|||||RP11-706C16.7|antisense|NON_CODING|ENST00000523657|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	53:0:0:0:0,0:0,0:53,53:0,0	114:4:0:0:10,10:0,0:100,104:0,0
8	144403776	.	G	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||133|TOP1MT|protein_coding|CODING|ENST00000518007||1),DOWNSTREAM(MODIFIER||||163|TOP1MT|protein_coding|CODING|ENST00000518760||1),DOWNSTREAM(MODIFIER||||200|TOP1MT|protein_coding|CODING|ENST00000519591||1),DOWNSTREAM(MODIFIER||||220|TOP1MT|protein_coding|CODING|ENST00000522041||1),DOWNSTREAM(MODIFIER||||32|TOP1MT|protein_coding|CODING|ENST00000520950||1),DOWNSTREAM(MODIFIER|||||TOP1MT|nonsense_mediated_decay|CODING|ENST00000522121||1),INTRON(MODIFIER||||503|TOP1MT|protein_coding|CODING|ENST00000519148|7|1),INTRON(MODIFIER||||503|TOP1MT|protein_coding|CODING|ENST00000521193|8|1),INTRON(MODIFIER||||503|TOP1MT|protein_coding|CODING|ENST00000523676|8|1),INTRON(MODIFIER||||601|TOP1MT|protein_coding|CODING|ENST00000329245|7|1),INTRON(MODIFIER|||||TOP1MT|nonsense_mediated_decay|CODING|ENST00000518951|7|1),INTRON(MODIFIER|||||TOP1MT|nonsense_mediated_decay|CODING|ENST00000519139|7|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:4:3:0:0,0:0,1:33,40:0,0	64:7:1:0:7,15:0,1:50,56:0,0
8	144404134	.	A	G	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||133|TOP1MT|protein_coding|CODING|ENST00000518007||1),DOWNSTREAM(MODIFIER||||163|TOP1MT|protein_coding|CODING|ENST00000518760||1),DOWNSTREAM(MODIFIER||||200|TOP1MT|protein_coding|CODING|ENST00000519591||1),DOWNSTREAM(MODIFIER||||220|TOP1MT|protein_coding|CODING|ENST00000522041||1),DOWNSTREAM(MODIFIER||||32|TOP1MT|protein_coding|CODING|ENST00000520950||1),DOWNSTREAM(MODIFIER|||||TOP1MT|nonsense_mediated_decay|CODING|ENST00000522121||1),INTRON(MODIFIER||||503|TOP1MT|protein_coding|CODING|ENST00000519148|7|1),INTRON(MODIFIER||||503|TOP1MT|protein_coding|CODING|ENST00000521193|8|1),INTRON(MODIFIER||||503|TOP1MT|protein_coding|CODING|ENST00000523676|8|1),INTRON(MODIFIER||||601|TOP1MT|protein_coding|CODING|ENST00000329245|7|1),INTRON(MODIFIER|||||TOP1MT|nonsense_mediated_decay|CODING|ENST00000518951|7|1),INTRON(MODIFIER|||||TOP1MT|nonsense_mediated_decay|CODING|ENST00000519139|7|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:4:0:0:29,46:0,0:0,0:0,0	60:10:3:0:44,70:0,0:6,7:0,0
8	144404800	.	T	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||133|TOP1MT|protein_coding|CODING|ENST00000518007||1),DOWNSTREAM(MODIFIER||||163|TOP1MT|protein_coding|CODING|ENST00000518760||1),DOWNSTREAM(MODIFIER||||200|TOP1MT|protein_coding|CODING|ENST00000519591||1),DOWNSTREAM(MODIFIER||||220|TOP1MT|protein_coding|CODING|ENST00000522041||1),DOWNSTREAM(MODIFIER||||32|TOP1MT|protein_coding|CODING|ENST00000520950||1),DOWNSTREAM(MODIFIER|||||TOP1MT|nonsense_mediated_decay|CODING|ENST00000522121||1),INTRON(MODIFIER||||503|TOP1MT|protein_coding|CODING|ENST00000519148|7|1),INTRON(MODIFIER||||503|TOP1MT|protein_coding|CODING|ENST00000521193|8|1),INTRON(MODIFIER||||503|TOP1MT|protein_coding|CODING|ENST00000523676|8|1),INTRON(MODIFIER||||601|TOP1MT|protein_coding|CODING|ENST00000329245|7|1),INTRON(MODIFIER|||||TOP1MT|nonsense_mediated_decay|CODING|ENST00000518951|7|1),INTRON(MODIFIER|||||TOP1MT|nonsense_mediated_decay|CODING|ENST00000519139|7|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:5:0:0:0,3:0,0:0,0:32,37	73:13:1:0:1,3:6,15:0,0:53,61
8	144472772	rs111943262	A	C	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=144472772;dbSNPBuildID=132;SSR=0;SAO=0;VP=050000000001000002000100;WGT=1;VC=SNV;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:3:0:0:35,39:0,0:0,1:1,1	99:8:0:0:81,86:8,11:1,2:1,2
8	144721410	.	G	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||496|ZNF623|protein_coding|CODING|ENST00000458270|1|1),INTRON(MODIFIER||||496|ZNF623|protein_coding|CODING|ENST00000526926|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:1:0:0:0,0:0,0:31,33:0,0	108:3:0:0:5,5:0,0:100,102:0,0
8	145224776	.	G	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1632|HEATR7A|protein_coding|CODING|ENST00000534366|3|1),INTRON(MODIFIER||||1641|HEATR7A|protein_coding|CODING|ENST00000326134|2|1),INTRON(MODIFIER||||1641|HEATR7A|protein_coding|CODING|ENST00000398656|3|1),INTRON(MODIFIER||||1641|HEATR7A|protein_coding|CODING|ENST00000528919|3|1),INTRON(MODIFIER||||422|HEATR7A|protein_coding|CODING|ENST00000423230|3|1),INTRON(MODIFIER|||||HEATR7A|retained_intron|CODING|ENST00000525287|4|1),INTRON(MODIFIER|||||HEATR7A|retained_intron|CODING|ENST00000527552|3|1),INTRON(MODIFIER|||||HEATR7A|retained_intron|CODING|ENST00000532255|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:2:0:0:0,0:0,0:34,36:0,0	103:3:0:0:5,5:0,1:94,100:1,1
8	145859529	rs148070208	A	G	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1083|ARHGAP39|protein_coding|CODING|ENST00000540274|1|1);RSPOS=145859529;GMAF=0.0174;dbSNPBuildID=134;SSR=0;SAO=0;VP=050000000005000014000100;WGT=1;VC=SNV;ASP;KGPhase1;KGPROD	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	43:0:0:0:43,45:0,0:0,0:0,0	99:4:0:0:85,90:0,1:10,13:0,0
8	145913373	.	A	G	.	PASS	NT=ref;QSS=24;QSS_NT=24;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER||||1083|ARHGAP39|protein_coding|CODING|ENST00000540274||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	54:3:0:0:49,53:2,2:0,0:0,0	109:8:0:0:94,105:1,1:5,6:1,1
8	145919019	.	G	A	.	PASS	NT=ref;QSS=23;QSS_NT=23;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||AF186192.1|lincRNA|NON_CODING|ENST00000525376||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	45:0:0:0:0,0:0,0:45,45:0,0	121:2:0:0:9,9:0,1:110,113:0,0
8	145965759	.	T	C	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||671|ZNF251|protein_coding|CODING|ENST00000292562|4|1),INTRON(MODIFIER|||||ZNF251|processed_transcript|CODING|ENST00000524394|2|1),INTRON(MODIFIER|||||ZNF251|processed_transcript|CODING|ENST00000533117|4|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:0:0:0:0,0:0,0:0,0:36,36	102:2:0:0:0,0:12,13:0,0:88,89
8	146031211	.	T	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||129|ZNF517|protein_coding|CODING|ENST00000528012|4|1),INTRON(MODIFIER||||142|ZNF517|protein_coding|CODING|ENST00000525105|3|1),INTRON(MODIFIER||||492|ZNF517|protein_coding|CODING|ENST00000359971|4|1),INTRON(MODIFIER||||492|ZNF517|protein_coding|CODING|ENST00000531720|3|1),INTRON(MODIFIER|||||ZNF517|nonsense_mediated_decay|CODING|ENST00000533965|4|1),INTRON(MODIFIER|||||ZNF517|processed_transcript|CODING|ENST00000526178|3|1),INTRON(MODIFIER|||||ZNF517|processed_transcript|CODING|ENST00000533944|3|1),INTRON(MODIFIER|||||ZNF517|retained_intron|CODING|ENST00000530879|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:2:0:0:0,0:0,1:0,0:29,31	89:5:0:0:0,0:1,1:6,10:77,80
9	269438	.	T	A	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||2031|DOCK8|protein_coding|CODING|ENST00000432829|1|1),INTRON(MODIFIER||||2099|DOCK8|protein_coding|CODING|ENST00000453981|1|1),INTRON(MODIFIER||||65|DOCK8|protein_coding|CODING|ENST00000479404|1|1),INTRON(MODIFIER|||||DOCK8|nonsense_mediated_decay|CODING|ENST00000469197|1|1),INTRON(MODIFIER|||||DOCK8|nonsense_mediated_decay|CODING|ENST00000524396|2|1),INTRON(MODIFIER|||||DOCK8|retained_intron|CODING|ENST00000454469|1|1),INTRON(MODIFIER|||||RP11-59O6.3|antisense|NON_CODING|ENST00000429661|1|1),UPSTREAM(MODIFIER||||106|DOCK8|protein_coding|CODING|ENST00000487230||1),UPSTREAM(MODIFIER||||1999|DOCK8|protein_coding|CODING|ENST00000469391||1),UPSTREAM(MODIFIER|||||DOCK8|nonsense_mediated_decay|CODING|ENST00000483757||1),UPSTREAM(MODIFIER|||||DOCK8|retained_intron|CODING|ENST00000382341||1),UPSTREAM(MODIFIER|||||DOCK8|retained_intron|CODING|ENST00000478380||1),UPSTREAM(MODIFIER|||||DOCK8|retained_intron|CODING|ENST00000495184||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:1:0:0:0,0:0,0:0,0:37,38	124:3:0:0:9,9:0,0:0,0:112,115
9	1644113	.	G	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:0:0:0:0,0:1,1:32,32:0,0	93:1:0:0:0,0:0,0:88,90:4,4
9	3272875	.	C	G	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||707|RFX3|protein_coding|CODING|ENST00000302303|10|1),INTRON(MODIFIER||||707|RFX3|protein_coding|CODING|ENST00000358730|8|1),INTRON(MODIFIER||||749|RFX3|protein_coding|CODING|ENST00000382004|10|1),UPSTREAM(MODIFIER||||173|RFX3|protein_coding|CODING|ENST00000458034||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:0:0:0:0,0:31,31:0,0:0,0	117:0:0:0:0,0:105,106:12,12:0,0
9	5434753	.	T	C	.	PASS	NT=ref;QSS=23;QSS_NT=23;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||147|PLGRKT|protein_coding|CODING|ENST00000223864|2|1),INTRON(MODIFIER|||||PLGRKT|processed_transcript|CODING|ENST00000472145|2|1),INTRON(MODIFIER|||||PLGRKT|processed_transcript|CODING|ENST00000473877|1|1),INTRON(MODIFIER|||||PLGRKT|processed_transcript|CODING|ENST00000482696|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	47:0:0:0:0,0:0,0:0,0:47,47	112:4:0:0:1,1:7,9:1,2:99,100
9	5817436	.	C	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER||||351|ERMP1|protein_coding|CODING|ENST00000381506|3|1),INTRON(MODIFIER||||904|ERMP1|protein_coding|CODING|ENST00000339450|4|1),INTRON(MODIFIER|||||ERMP1|nonsense_mediated_decay|CODING|ENST00000462592|4|1),INTRON(MODIFIER|||||ERMP1|nonsense_mediated_decay|CODING|ENST00000487088|4|1),INTRON(MODIFIER|||||ERMP1|nonsense_mediated_decay|CODING|ENST00000489219|4|1),INTRON(MODIFIER|||||ERMP1|processed_transcript|CODING|ENST00000214893|3|1),INTRON(MODIFIER|||||ERMP1|retained_intron|CODING|ENST00000475005|4|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	49:3:0:0:0,0:46,50:0,0:0,1	128:1:0:0:0,0:122,124:0,0:5,5
9	6108151	.	G	T	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=GG->GT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	49:0:0:0:0,0:0,0:49,49:0,0	105:2:0:0:0,0:1,1:97,99:5,5
9	6659631	.	T	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-390F4.6|processed_transcript|NON_CODING|ENST00000413145|1|1),UPSTREAM(MODIFIER|||||Metazoa_SRP|misc_RNA|NON_CODING|ENST00000577239||1),UPSTREAM(MODIFIER|||||RP11-106A1.3|processed_pseudogene|NON_CODING|ENST00000435535||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:5:0:0:0,0:0,0:0,0:27,32	67:22:0:0:6,7:0,0:0,0:39,63
9	7461304	.	G	A	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	42:0:0:0:0,0:0,0:42,42:0,0	95:0:0:0:7,7:0,0:86,86:2,2
9	8462488	.	G	A	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1502|PTPRD|protein_coding|CODING|ENST00000397611|15|1),INTRON(MODIFIER||||1502|PTPRD|protein_coding|CODING|ENST00000537002|14|1),INTRON(MODIFIER||||1505|PTPRD|protein_coding|CODING|ENST00000397606|14|1),INTRON(MODIFIER||||1505|PTPRD|protein_coding|CODING|ENST00000397617|14|1),INTRON(MODIFIER||||1505|PTPRD|protein_coding|CODING|ENST00000486161|16|1),INTRON(MODIFIER||||1506|PTPRD|protein_coding|CODING|ENST00000355233|16|1),INTRON(MODIFIER||||1890|PTPRD|protein_coding|CODING|ENST00000358503|17|1),INTRON(MODIFIER||||1899|PTPRD|protein_coding|CODING|ENST00000360074|18|1),INTRON(MODIFIER||||1912|PTPRD|protein_coding|CODING|ENST00000356435|21|1),INTRON(MODIFIER||||1912|PTPRD|protein_coding|CODING|ENST00000381196|31|1),INTRON(MODIFIER||||1912|PTPRD|protein_coding|CODING|ENST00000540109|21|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	43:1:0:0:0,0:0,0:42,43:0,0	101:2:0:0:7,7:0,0:92,95:0,0
9	8479736	.	G	T	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||PTPRD|retained_intron|CODING|ENST00000477552||1),INTRON(MODIFIER||||1502|PTPRD|protein_coding|CODING|ENST00000397611|13|1),INTRON(MODIFIER||||1502|PTPRD|protein_coding|CODING|ENST00000537002|12|1),INTRON(MODIFIER||||1505|PTPRD|protein_coding|CODING|ENST00000397606|12|1),INTRON(MODIFIER||||1505|PTPRD|protein_coding|CODING|ENST00000397617|12|1),INTRON(MODIFIER||||1505|PTPRD|protein_coding|CODING|ENST00000486161|14|1),INTRON(MODIFIER||||1506|PTPRD|protein_coding|CODING|ENST00000355233|14|1),INTRON(MODIFIER||||1890|PTPRD|protein_coding|CODING|ENST00000358503|15|1),INTRON(MODIFIER||||1899|PTPRD|protein_coding|CODING|ENST00000360074|16|1),INTRON(MODIFIER||||1912|PTPRD|protein_coding|CODING|ENST00000356435|19|1),INTRON(MODIFIER||||1912|PTPRD|protein_coding|CODING|ENST00000381196|29|1),INTRON(MODIFIER||||1912|PTPRD|protein_coding|CODING|ENST00000540109|19|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:0:0:0:0,0:0,0:33,33:0,0	95:1:0:0:0,0:0,0:81,82:13,14
9	9105004	.	G	A	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1912|PTPRD|protein_coding|CODING|ENST00000381196|9|1),INTRON(MODIFIER||||202|PTPRD|protein_coding|CODING|ENST00000463477|11|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:0:0:0:0,0:0,0:39,40:0,0	117:1:0:0:8,8:0,0:108,108:0,0
9	9634186	.	A	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1912|PTPRD|protein_coding|CODING|ENST00000381196|6|1),INTRON(MODIFIER||||202|PTPRD|protein_coding|CODING|ENST00000463477|7|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	27:0:0:0:27,27:0,0:0,0:0,0	114:1:0:0:102,103:0,0:11,11:0,0
9	10367081	.	A	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1912|PTPRD|protein_coding|CODING|ENST00000381196|1|1),INTRON(MODIFIER||||202|PTPRD|protein_coding|CODING|ENST00000463477|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:3:1:0:31,34:0,0:0,0:0,0	93:5:0:0:80,83:0,0:0,1:8,9
9	11439088	.	C	T	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	42:0:0:0:0,0:42,43:0,0:0,0	103:0:0:0:0,0:95,95:0,0:8,8
9	11513632	.	G	A	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:1:0:0:0,0:1,1:34,35:0,0	102:0:0:0:10,10:0,0:92,92:0,0
9	12142549	.	T	G	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-74C3.1|lincRNA|NON_CODING|ENST00000452685|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:0:0:0:0,0:0,0:0,0:38,38	105:2:0:0:0,0:0,0:9,10:94,95
9	12467079	rs186342364	C	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=12467079;GMAF=0.0005;dbSNPBuildID=135;SSR=0;SAO=0;VP=050000000005000014000100;WGT=1;VC=SNV;ASP;KGPhase1;KGPROD	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:0:0:0:0,0:32,32:0,0:0,0	100:0:0:0:0,0:90,91:0,0:10,10
9	13716397	.	G	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:0:0:0:0,0:0,0:31,31:0,1	69:1:0:0:7,9:0,0:60,63:1,1
9	13716399	rs28582296	G	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=13716399;dbSNPBuildID=125;SSR=0;SAO=0;VP=050100000005040102000100;WGT=1;VC=SNV;SLO;ASP;VLD;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	28:0:0:0:0,0:0,0:28,29:0,0	67:0:0:0:8,10:0,0:59,61:0,0
9	14804665	.	C	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||2179|FREM1|protein_coding|CODING|ENST00000380880|19|1),INTRON(MODIFIER||||2179|FREM1|protein_coding|CODING|ENST00000422223|20|1),INTRON(MODIFIER||||2180|FREM1|protein_coding|CODING|ENST00000380881|20|1),INTRON(MODIFIER|||||FREM1|nonsense_mediated_decay|CODING|ENST00000380875|20|1),UPSTREAM(MODIFIER|||||FREM1|retained_intron|CODING|ENST00000497634||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:0:0:0:0,0:34,34:0,0:0,0	105:3:0:0:0,0:97,99:0,0:5,6
9	15763097	.	G	A	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1229|CCDC171|protein_coding|CODING|ENST00000297641|18|1),INTRON(MODIFIER||||1326|CCDC171|protein_coding|CODING|ENST00000380701|18|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	41:1:0:0:0,0:0,0:40,41:0,0	100:0:0:0:6,6:0,0:94,95:0,0
9	16962979	.	C	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:1:0:0:0,0:32,32:0,0:0,0	105:1:0:0:0,0:95,96:0,0:9,9
9	17540074	.	C	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->AC;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:0:0:0:0,2:40,42:0,0:0,0	133:0:0:0:10,14:123,124:0,0:0,0
9	17540101	.	G	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:0:0:0:0,2:0,0:40,42:0,0	124:1:0:0:10,13:0,1:113,116:0,0
9	17540170	.	C	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->CG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:1:0:0:0,0:34,37:0,1:0,0	122:2:0:0:0,0:112,118:8,10:0,0
9	19837456	.	C	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->AC;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	26:0:0:0:0,0:26,27:0,0:0,0	36:0:0:0:5,5:31,34:0,0:0,0
9	20501786	.	C	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=DOWNSTREAM(MODIFIER|||||MIR4474|miRNA|NON_CODING|ENST00000579189||1),INTRON(MODIFIER||||138|MLLT3|protein_coding|CODING|ENST00000355930|2|1),INTRON(MODIFIER||||565|MLLT3|protein_coding|CODING|ENST00000429426|2|1),INTRON(MODIFIER||||568|MLLT3|protein_coding|CODING|ENST00000380338|2|1),INTRON(MODIFIER|||||MLLT3|processed_transcript|CODING|ENST00000475957|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:2:0:0:0,0:36,38:0,0:0,0	82:6:0:0:0,0:71,78:0,0:5,5
9	22437536	.	A	T	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:0:0:0:39,39:0,0:0,0:0,0	104:0:0:0:94,94:1,1:0,0:9,9
9	23077962	.	G	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	23:0:0:0:0,0:0,0:23,26:0,0	57:1:0:0:0,0:0,0:48,49:8,9
9	23848944	.	A	T	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-321L2.1|lincRNA|NON_CODING|ENST00000423440|4|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	43:0:0:0:43,43:0,0:0,0:0,0	100:1:0:0:89,90:0,0:0,0:10,10
9	24153776	.	G	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:0:0:0:0,0:0,0:32,32:0,0	95:2:0:0:6,7:0,0:87,89:0,0
9	24766736	.	A	T	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	41:0:0:0:41,41:0,0:0,0:0,0	105:1:0:0:96,97:0,0:0,0:8,8
9	24928437	.	T	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:0:0:0:1,1:0,0:0,0:32,32	112:0:0:0:0,0:9,9:0,0:103,103
9	25102356	.	C	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	46:0:0:0:0,0:46,47:0,0:0,0	104:0:0:0:0,0:100,101:0,0:4,4
9	26232794	.	T	G	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	49:1:0:0:0,0:0,0:0,0:48,49	115:2:0:0:0,0:0,0:7,7:106,108
9	28189699	rs10968371	G	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||606|LINGO2|protein_coding|CODING|ENST00000379992|4|1),INTRON(MODIFIER|||||LINGO2|processed_transcript|CODING|ENST00000493941|1|1);RSPOS=28189699;dbSNPBuildID=120;SSR=0;SAO=0;VP=050100080005000102000100;GENEINFO=LINGO2:158038;WGT=1;VC=SNV;SLO;INT;ASP;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	25:1:15:0:0,0:0,0:24,38:0,0	60:3:33:0:9,11:0,0:48,77:0,0
9	28229018	.	T	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||606|LINGO2|protein_coding|CODING|ENST00000379992|4|1),INTRON(MODIFIER|||||LINGO2|processed_transcript|CODING|ENST00000493941|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	28:0:0:0:0,0:0,0:0,0:28,28	112:0:0:0:12,12:0,0:0,0:100,100
9	28554599	.	G	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||606|LINGO2|protein_coding|CODING|ENST00000379992|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	28:1:0:0:0,0:0,0:27,39:0,0	43:1:0:0:0,0:0,0:38,77:4,5
9	29524948	.	C	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	15:0:0:0:0,0:15,15:0,0:0,0	74:2:0:0:0,0:58,60:0,0:14,16
9	30041561	.	C	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:0:0:0:0,0:31,31:0,0:0,0	80:1:0:0:5,5:74,75:0,0:0,0
9	33398197	.	G	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||141|AQP7|protein_coding|CODING|ENST00000541274|2|1),INTRON(MODIFIER||||165|AQP7|protein_coding|CODING|ENST00000537089|2|1),INTRON(MODIFIER||||216|AQP7|protein_coding|CODING|ENST00000377425|2|1),INTRON(MODIFIER||||257|AQP7|protein_coding|CODING|ENST00000539936|2|1),INTRON(MODIFIER||||342|AQP7|protein_coding|CODING|ENST00000297988|2|1),INTRON(MODIFIER|||||AQP7|processed_transcript|CODING|ENST00000481906|2|1),UPSTREAM(MODIFIER||||168|AQP7|protein_coding|CODING|ENST00000439678||1),UPSTREAM(MODIFIER||||256|AQP7|protein_coding|CODING|ENST00000379506||1),UPSTREAM(MODIFIER||||341|AQP7|protein_coding|CODING|ENST00000379507||1),UPSTREAM(MODIFIER|||||RP11-311H10.4|antisense|NON_CODING|ENST00000450864||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:0:0:0:0,0:0,0:38,39:0,0	93:0:0:0:7,7:0,0:86,86:0,0
9	33499528	.	G	C	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||SUGT1P|unprocessed_pseudogene|NON_CODING|ENST00000379514||1),INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||RP11-255A11.13|lincRNA|NON_CODING|ENST00000421855||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	45:4:0:0:0,0:0,0:41,46:0,0	96:7:0:0:1,3:5,5:83,88:0,0
9	34534161	.	T	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:0:0:0:0,0:0,0:0,0:35,35	114:0:0:0:0,0:5,5:0,0:109,109
9	35246861	.	G	C	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||UNC13B|processed_transcript|CODING|ENST00000485086||1),INTRON(MODIFIER||||1591|UNC13B|protein_coding|CODING|ENST00000378495|6|1),INTRON(MODIFIER||||1610|UNC13B|protein_coding|CODING|ENST00000378496|6|1),INTRON(MODIFIER||||1622|UNC13B|protein_coding|CODING|ENST00000396787|6|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:0:0:0:0,0:0,0:36,36:0,0	113:0:0:0:0,0:10,10:103,103:0,0
9	35600757	.	C	T	.	PASS	NT=ref;QSS=30;QSS_NT=30;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER||||626|TESK1|protein_coding|CODING|ENST00000336395||1),UPSTREAM(MODIFIER|||||TESK1|processed_transcript|CODING|ENST00000498522||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	62:2:0:0:0,0:60,62:0,0:0,0	132:0:0:0:0,0:123,125:0,0:9,9
9	35937312	.	C	G	.	PASS	NT=ref;QSS=23;QSS_NT=23;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||RP11-327L3.3|antisense|NON_CODING|ENST00000433838||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	47:1:0:0:0,0:46,47:0,0:0,0	102:2:0:0:0,0:95,96:5,6:0,0
9	36940161	.	G	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||218|PAX5|protein_coding|CODING|ENST00000524340|2|1),INTRON(MODIFIER||||220|PAX5|protein_coding|CODING|ENST00000523145|5|1),INTRON(MODIFIER||||283|PAX5|protein_coding|CODING|ENST00000522003|5|1),INTRON(MODIFIER||||291|PAX5|protein_coding|CODING|ENST00000446742|5|1),INTRON(MODIFIER||||295|PAX5|protein_coding|CODING|ENST00000520154|6|1),INTRON(MODIFIER||||319|PAX5|protein_coding|CODING|ENST00000520281|5|1),INTRON(MODIFIER||||324|PAX5|protein_coding|CODING|ENST00000523241|6|1),INTRON(MODIFIER||||328|PAX5|protein_coding|CODING|ENST00000377847|6|1),INTRON(MODIFIER||||348|PAX5|protein_coding|CODING|ENST00000414447|5|1),INTRON(MODIFIER||||357|PAX5|protein_coding|CODING|ENST00000377852|6|1),INTRON(MODIFIER||||362|PAX5|protein_coding|CODING|ENST00000377853|6|1),INTRON(MODIFIER||||391|PAX5|protein_coding|CODING|ENST00000358127|6|1),INTRON(MODIFIER|||||PAX5|nonsense_mediated_decay|CODING|ENST00000377840|6|1),INTRON(MODIFIER|||||PAX5|nonsense_mediated_decay|CODING|ENST00000523493|6|1),INTRON(MODIFIER|||||PAX5|retained_intron|CODING|ENST00000520083|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	28:0:0:0:0,0:0,0:28,28:0,0	107:1:0:0:11,11:0,0:95,96:0,0
9	37982224	.	T	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||509|SHB|protein_coding|CODING|ENST00000377707|2|1),INTRON(MODIFIER|||||RP11-613M10.9|nonsense_mediated_decay|NON_CODING|ENST00000540557|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	46:1:0:0:0,0:0,0:0,0:45,47	105:0:0:0:5,5:0,0:0,0:100,100
9	38191663	rs58542541	T	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||snoU13|snoRNA|NON_CODING|ENST00000459319||1),INTERGENIC(MODIFIER||||||||||1);RSPOS=38191663;dbSNPBuildID=129;SSR=0;SAO=0;VP=050100000001000102000100;WGT=1;VC=SNV;SLO;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	28:0:0:0:0,0:0,0:0,0:28,28	97:2:0:0:7,7:0,0:1,1:87,90
9	39002397	.	A	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	20:0:0:0:20,21:0,0:0,0:0,0	38:0:0:0:31,33:0,0:7,7:0,0
9	41702334	.	A	T	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:0:0:0:40,46:0,0:0,0:0,0	111:2:0:0:101,114:0,0:0,0:8,9
9	42945357	.	G	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	16:0:0:0:0,0:0,0:16,18:0,1	54:3:0:0:11,15:0,1:40,47:0,0
9	43603149	.	C	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:0:0:0:0,0:37,37:0,0:0,0	110:0:0:0:0,0:105,106:0,0:5,5
9	44109569	rs200153395	G	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||ANKRD20A7P|unprocessed_pseudogene|NON_CODING|ENST00000402318|4|1),UPSTREAM(MODIFIER|||||U6|snRNA|NON_CODING|ENST00000459383||1);RSPOS=44109569;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:0:0:0:0,0:0,0:31,37:0,0	96:1:0:0:0,0:0,0:88,93:7,8
9	44120670	rs201294751	G	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||BX649563.2|processed_pseudogene|NON_CODING|ENST00000415115||1),INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||ANKRD20A7P|unprocessed_pseudogene|NON_CODING|ENST00000402318||1);RSPOS=44120670;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	28:0:0:0:0,0:0,0:28,28:0,1	103:1:0:0:0,0:0,0:89,91:13,27
9	44889851	.	C	T	.	PASS	NT=ref;QSS=24;QSS_NT=24;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	49:0:0:0:0,0:49,49:0,0:0,0	111:0:0:0:0,0:103,103:1,1:7,8
9	45374640	.	T	C	.	PASS	NT=ref;QSS=23;QSS_NT=23;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||MYO5BP1|processed_pseudogene|NON_CODING|ENST00000437055||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	51:1:0:0:0,0:0,0:0,0:50,55	107:0:0:0:1,1:7,8:0,1:99,109
9	45710208	.	G	T	.	PASS	NT=ref;QSS=30;QSS_NT=30;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	62:1:0:0:0,0:0,0:61,65:0,0	129:2:0:0:0,0:0,0:121,126:6,6
9	47217969	.	T	C	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	41:1:0:0:0,0:0,0:0,0:40,46	93:0:0:0:0,0:6,6:0,0:87,92
9	66263212	rs78637635	T	C	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=66263212;dbSNPBuildID=131;SSR=0;SAO=0;VP=050000000001000102000100;WGT=1;VC=SNV;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:2:0:0:0,0:0,0:0,0:35,37	111:0:0:0:0,0:9,10:0,0:102,102
9	66511863	rs201632170	A	G	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=AA->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=DOWNSTREAM(MODIFIER|||||RP11-262H14.3|processed_transcript|NON_CODING|ENST00000586625||1),DOWNSTREAM(MODIFIER|||||RP11-262H14.3|processed_transcript|NON_CODING|ENST00000591993||1),DOWNSTREAM(MODIFIER|||||RP11-262H14.7|transcribed_processed_pseudogene|NON_CODING|ENST00000435875||1),INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||MYO5BP2|processed_pseudogene|NON_CODING|ENST00000449815||1);RSPOS=66511863;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	78:0:0:0:78,79:0,0:0,2:0,0	207:0:0:0:199,201:0,1:8,12:0,1
9	66769581	.	G	A	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:2:0:0:0,0:0,0:34,39:0,0	112:10:0:0:8,10:0,0:94,107:0,0
9	66769626	.	A	C	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	41:3:0:0:38,53:0,0:0,0:0,0	141:3:0:0:127,143:10,15:1,1:0,1
9	66769651	.	T	A	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	43:0:0:0:0,0:0,0:0,0:43,56	138:2:0:0:10,13:0,0:1,1:125,144
9	66816784	.	A	T	.	PASS	NT=ref;QSS=35;QSS_NT=35;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	75:4:0:0:71,108:0,0:0,0:0,2	170:15:0:0:141,246:0,2:1,1:13,25
9	67304505	.	G	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->GT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	43:0:0:0:0,0:0,0:43,44:0,1	106:3:0:0:0,1:1,1:94,101:8,12
9	67321340	rs200774227	C	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=67321340;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	100:0:0:0:0,0:99,101:0,0:1,2	233:1:0:0:0,0:220,227:0,0:12,16
9	67793877	.	C	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=DOWNSTREAM(MODIFIER|||||RP11-12A20.6|unprocessed_pseudogene|NON_CODING|ENST00000419793||1),EXON(MODIFIER|||||RP11-12A20.7|processed_transcript|NON_CODING|ENST00000315762|1|1),EXON(MODIFIER|||||RP11-12A20.7|unprocessed_pseudogene|NON_CODING|ENST00000452444|1|1),INTRON(MODIFIER||||67|FAM27B|protein_coding|CODING|ENST00000377484|1|1),UPSTREAM(MODIFIER|||||RP11-12A20.4|unprocessed_pseudogene|NON_CODING|ENST00000418128||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:0:0:0:0,0:30,39:0,0:0,1	77:3:0:0:0,0:65,93:0,0:9,10
9	68176947	rs4540503	A	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||RP11-452D2.1|processed_pseudogene|NON_CODING|ENST00000433508||1),INTERGENIC(MODIFIER||||||||||1);RSPOS=68176947;dbSNPBuildID=111;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:0:0:0:37,37:0,0:0,0:0,0	119:0:0:0:110,110:1,1:8,10:0,0
9	68242972	rs2772854	G	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=68242972;dbSNPBuildID=100;SSR=0;SAO=0;VP=05010000000500010e000100;WGT=1;VC=SNV;SLO;ASP;GNO;KGPilot123;KGPROD;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	45:0:0:0:0,1:0,0:45,45:0,0	123:0:0:0:9,10:0,0:113,113:1,1
9	68302158	rs77945742	C	A	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=CC->AC;SOMATIC;TQSS=2;TQSS_NT=2;EFF=DOWNSTREAM(MODIFIER|||||RP11-452D2.2|processed_pseudogene|NON_CODING|ENST00000452635||1),INTERGENIC(MODIFIER||||||||||1);RSPOS=68302158;dbSNPBuildID=131;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	64:7:0:0:0,2:57,63:0,1:0,0	115:5:0:0:6,10:103,111:1,1:0,0
9	68302217	rs150625040	G	A	.	PASS	NT=ref;QSS=29;QSS_NT=29;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||RP11-452D2.2|processed_pseudogene|NON_CODING|ENST00000452635||1),INTERGENIC(MODIFIER||||||||||1);RSPOS=68302217;dbSNPBuildID=134;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	63:5:0:0:0,1:0,0:58,66:0,0	102:7:0:0:9,13:1,1:85,101:0,0
9	68370207	.	T	G	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||CDK2AP2P3|processed_pseudogene|NON_CODING|ENST00000422476||1),DOWNSTREAM(MODIFIER|||||PTGER4P3|processed_pseudogene|NON_CODING|ENST00000458150||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	82:1:0:0:0,0:0,0:1,1:80,89	234:3:0:0:0,0:0,0:10,15:221,252
9	68394782	.	G	C	.	PASS	NT=ref;QSS=31;QSS_NT=31;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||RP11-764K9.1|processed_transcript|NON_CODING|ENST00000417843||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	65:0:0:0:0,0:0,0:65,79:0,0	172:1:0:0:0,0:9,14:162,188:0,0
9	68403109	rs76864772	G	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||RP11-764K9.1|processed_transcript|NON_CODING|ENST00000417843||1);RSPOS=68403109;dbSNPBuildID=131;SSR=0;SAO=0;VP=050000000001000102000100;WGT=1;VC=SNV;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	103:26:0:0:0,0:0,0:76,134:1,1	212:73:0:0:0,0:0,0:128,273:11,15
9	68436831	.	A	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-764K9.4|unprocessed_pseudogene|NON_CODING|ENST00000376334|4|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	99:2:0:0:96,142:0,0:0,0:1,3	255:4:0:0:240,393:0,1:0,0:11,17
9	68458057	.	A	G	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||RP11-764K9.4|unprocessed_pseudogene|NON_CODING|ENST00000376334||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	43:0:0:0:43,49:0,1:0,0:0,0	141:0:0:0:128,145:1,1:10,11:2,2
9	68463282	.	T	A	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=TT->AT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	93:1:0:0:1,2:0,0:0,0:91,108	269:1:0:0:10,14:0,0:0,0:258,324
9	68465750	.	G	A	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	63:2:0:0:0,1:0,0:61,77:0,0	191:4:0:0:10,14:0,0:177,227:0,1
9	68468031	.	T	C	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=TT->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	97:0:0:0:0,0:0,1:0,0:97,124	313:5:0:0:0,0:12,14:0,0:296,356
9	68470711	.	A	G	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=AA->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	68:1:0:0:67,78:0,0:0,1:0,0	179:3:0:0:168,196:0,1:8,9:0,0
9	68473185	.	G	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	104:2:0:0:1,1:0,0:101,127:0,0	278:4:0:0:10,15:0,0:264,306:0,0
9	68481836	.	A	C	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=AA->AC;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	102:0:0:0:100,126:1,4:1,1:0,0	259:2:0:0:243,306:13,18:0,0:1,1
9	68494961	.	G	A	.	PASS	NT=ref;QSS=29;QSS_NT=29;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	59:0:0:0:0,0:0,0:59,65:0,0	130:1:0:0:10,15:0,0:119,141:0,0
9	68495832	.	A	G	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=AA->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	56:4:0:0:52,63:0,0:0,2:0,0	124:13:0:0:105,137:0,3:6,10:0,0
9	68716351	.	A	G	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:0:0:0:33,38:0,0:0,1:0,0	117:3:0:0:105,123:0,0:9,25:0,0
9	68720545	.	G	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:1:0:0:0,0:0,0:33,41:0,0	103:0:0:0:7,8:0,0:96,111:0,0
9	68744657	.	A	T	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||PGM5P1|unprocessed_pseudogene|NON_CODING|ENST00000510760|8|1),INTRON(MODIFIER|||||RP11-391M20.1|unprocessed_pseudogene|NON_CODING|ENST00000427066|4|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	41:0:0:0:41,53:0,0:0,0:0,0	196:1:0:0:183,209:0,0:0,0:12,17
9	69007418	.	T	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	69:0:0:0:0,1:0,0:0,0:69,80	170:1:0:0:7,10:0,0:1,1:161,195
9	69007453	rs148232966	T	A	.	PASS	NT=ref;QSS=41;QSS_NT=41;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=69007453;dbSNPBuildID=134;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	86:1:0:0:0,2:0,0:0,0:85,123	227:1:0:0:11,14:0,0:0,0:215,290
9	69019149	.	T	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	26:0:0:0:0,0:0,0:0,0:26,34	84:2:0:0:0,0:12,18:0,0:70,90
9	69057851	.	C	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	99:0:0:0:0,0:97,111:1,1:1,1	371:3:0:0:2,2:350,416:16,18:0,0
9	69063230	.	C	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->AC;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||RP11-87H9.2|unprocessed_pseudogene|NON_CODING|ENST00000424707||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	77:0:0:0:0,0:77,108:0,0:0,0	176:3:0:0:11,13:161,246:0,0:1,1
9	69069438	.	G	T	.	PASS	NT=ref;QSS=23;QSS_NT=23;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-87H9.2|unprocessed_pseudogene|NON_CODING|ENST00000424707|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	46:0:0:0:0,0:0,0:46,59:0,0	140:0:0:0:0,0:0,0:132,180:8,10
9	69075241	.	G	C	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||PGM5P2|processed_transcript|NON_CODING|ENST00000591037||1),INTRON(MODIFIER|||||RP11-87H9.2|unprocessed_pseudogene|NON_CODING|ENST00000424707|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	64:0:0:0:0,0:0,1:63,97:1,1	254:1:0:0:0,1:8,12:244,298:1,1
9	69483596	.	C	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->AC;SOMATIC;TQSS=2;TQSS_NT=2;EFF=DOWNSTREAM(MODIFIER|||||CR769776.3|processed_pseudogene|NON_CODING|ENST00000441254||1),DOWNSTREAM(MODIFIER|||||CYP4F25P|unprocessed_pseudogene|NON_CODING|ENST00000446871||1),DOWNSTREAM(MODIFIER|||||RP11-793G16.3|processed_pseudogene|NON_CODING|ENST00000455514||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	54:2:0:0:0,1:52,55:0,0:0,0	101:1:0:0:6,14:94,99:0,0:0,0
9	69499790	.	C	T	.	PASS	NT=ref;QSS=23;QSS_NT=23;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||CNN2P3|processed_pseudogene|NON_CODING|ENST00000450201||1),UPSTREAM(MODIFIER|||||RP11-250H24.4|processed_pseudogene|NON_CODING|ENST00000456472||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	46:0:0:0:0,2:46,46:0,0:0,0	87:0:0:0:0,0:82,85:0,0:5,5
9	69699899	rs150453396	T	G	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=TT->GT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=69699899;dbSNPBuildID=134;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	47:0:0:0:0,0:0,0:0,1:47,52	123:2:0:0:0,2:0,7:11,15:110,134
9	69699916	rs146316484	A	C	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=AA->AC;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=69699916;dbSNPBuildID=134;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	46:0:0:0:46,50:0,1:0,0:0,0	125:3:0:0:112,145:10,14:0,0:0,0
9	69699933	.	T	G	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=TT->GT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:0:0:0:0,0:0,0:0,1:40,42	111:1:0:0:1,1:3,6:10,13:96,115
9	69751119	.	G	A	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=GG->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||RP11-250H24.6|processed_pseudogene|NON_CODING|ENST00000445380||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	45:0:0:0:0,1:0,0:45,47:0,0	123:0:0:0:10,15:0,0:113,120:0,0
9	69807991	.	A	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	84:0:0:0:84,103:0,2:0,0:0,0	315:5:0:0:302,354:8,15:0,0:0,0
9	69810575	.	T	C	.	PASS	NT=ref;QSS=31;QSS_NT=31;SGT=TT->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	95:0:0:0:0,0:0,2:0,0:95,99	258:1:0:0:0,0:14,17:0,0:243,256
9	69843627	.	C	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER|||||RP11-460N11.2|unprocessed_pseudogene|NON_CODING|ENST00000455242|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	46:0:0:0:0,0:46,47:0,0:0,1	217:0:0:0:0,0:196,197:0,0:21,27
9	69847251	.	C	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->AC;SOMATIC;TQSS=2;TQSS_NT=2;EFF=EXON(MODIFIER|||||RP11-460N11.2|unprocessed_pseudogene|NON_CODING|ENST00000455242|5|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	43:2:0:0:0,0:41,42:0,0:0,1	142:2:0:0:10,11:130,133:0,0:0,0
9	69963513	.	C	T	.	PASS	NT=ref;QSS=32;QSS_NT=32;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	70:5:0:0:0,0:65,88:0,0:0,0	203:14:0:0:0,2:179,255:0,1:10,14
9	69969079	rs201053685	C	T	.	PASS	NT=ref;QSS=23;QSS_NT=23;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=69969079;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	68:3:0:0:0,0:64,78:0,0:1,3	128:2:0:0:0,1:117,157:0,1:9,20
9	69984405	.	T	G	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:1:0:0:0,1:2,2:0,1:33,40	71:2:0:0:0,0:0,0:8,15:61,74
9	70135974	.	C	T	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	43:0:0:0:0,0:43,76:0,0:0,1	87:3:0:0:0,0:76,103:0,0:8,9
9	70494660	rs199767500	T	C	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||CBWD5|processed_transcript|CODING|ENST00000441808|1|1),UPSTREAM(MODIFIER||||113|CBWD5|protein_coding|CODING|ENST00000377384||1),UPSTREAM(MODIFIER||||347|CBWD5|protein_coding|CODING|ENST00000377395||1),UPSTREAM(MODIFIER||||375|CBWD5|protein_coding|CODING|ENST00000429800||1),UPSTREAM(MODIFIER||||376|CBWD5|protein_coding|CODING|ENST00000430059||1),UPSTREAM(MODIFIER||||395|CBWD5|protein_coding|CODING|ENST00000382405||1),UPSTREAM(MODIFIER|||||CBWD5|nonsense_mediated_decay|CODING|ENST00000377389||1),UPSTREAM(MODIFIER|||||CBWD5|nonsense_mediated_decay|CODING|ENST00000465474||1),UPSTREAM(MODIFIER|||||CBWD5|nonsense_mediated_decay|CODING|ENST00000469921||1),UPSTREAM(MODIFIER|||||CBWD5|nonsense_mediated_decay|CODING|ENST00000476161||1),UPSTREAM(MODIFIER|||||CBWD5|nonsense_mediated_decay|CODING|ENST00000480229||1),UPSTREAM(MODIFIER|||||CBWD5|nonsense_mediated_decay|CODING|ENST00000486221||1),UPSTREAM(MODIFIER|||||CBWD5|nonsense_mediated_decay|CODING|ENST00000497250||1),UPSTREAM(MODIFIER|||||CBWD5|processed_transcript|CODING|ENST00000464913||1),UPSTREAM(MODIFIER|||||CBWD5|retained_intron|CODING|ENST00000377380||1),UPSTREAM(MODIFIER|||||CBWD5|retained_intron|CODING|ENST00000382404||1),UPSTREAM(MODIFIER|||||CBWD5|retained_intron|CODING|ENST00000486466||1);RSPOS=70494660;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:1:0:0:0,0:0,0:0,0:36,40	120:0:0:0:1,1:17,22:0,0:102,104
9	70653034	.	G	A	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	72:3:0:0:0,0:0,0:69,80:0,0	145:7:0:0:5,6:0,1:133,152:0,0
9	70691553	.	C	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:0:0:0:0,0:29,30:0,0:0,0	96:1:0:0:0,0:84,92:0,0:11,11
9	74882061	.	G	T	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:0:0:0:0,0:0,0:39,39:0,0	82:1:0:0:0,0:0,0:73,74:8,8
9	74958897	rs71505975	A	G	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||RP11-63P12.6|lincRNA|NON_CODING|ENST00000436054||1),INTERGENIC(MODIFIER||||||||||1);RSPOS=74958897;dbSNPBuildID=130;SSR=0;SAO=0;VP=050100000001040102000100;WGT=1;VC=SNV;SLO;VLD;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:0:0:0:33,33:0,0:0,0:0,0	84:0:0:0:77,78:0,0:7,7:0,0
9	77373555	.	G	C	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||1133|TRPM6|protein_coding|CODING|ENST00000312449||1),INTRON(MODIFIER||||1947|TRPM6|protein_coding|CODING|ENST00000376864|27|1),INTRON(MODIFIER||||2017|TRPM6|protein_coding|CODING|ENST00000361255|27|1),INTRON(MODIFIER||||2017|TRPM6|protein_coding|CODING|ENST00000449912|27|1),INTRON(MODIFIER||||2022|TRPM6|protein_coding|CODING|ENST00000360774|27|1),INTRON(MODIFIER||||2026|TRPM6|protein_coding|CODING|ENST00000451710|27|1),INTRON(MODIFIER||||859|TRPM6|protein_coding|CODING|ENST00000376871|13|1),INTRON(MODIFIER||||977|TRPM6|protein_coding|CODING|ENST00000376872|14|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:0:0:0:0,0:0,0:35,35:0,0	102:0:0:0:0,0:9,9:93,93:0,0
9	77391499	.	A	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1133|TRPM6|protein_coding|CODING|ENST00000312449|17|1),INTRON(MODIFIER||||1947|TRPM6|protein_coding|CODING|ENST00000376864|23|1),INTRON(MODIFIER||||2017|TRPM6|protein_coding|CODING|ENST00000361255|23|1),INTRON(MODIFIER||||2017|TRPM6|protein_coding|CODING|ENST00000449912|23|1),INTRON(MODIFIER||||2022|TRPM6|protein_coding|CODING|ENST00000360774|23|1),INTRON(MODIFIER||||2026|TRPM6|protein_coding|CODING|ENST00000451710|23|1),INTRON(MODIFIER||||859|TRPM6|protein_coding|CODING|ENST00000376871|13|1),INTRON(MODIFIER||||977|TRPM6|protein_coding|CODING|ENST00000376872|14|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:0:0:0:30,30:0,0:0,0:0,0	99:0:0:0:91,91:0,0:8,8:0,0
9	77840661	rs199965701	G	A	.	PASS	NT=ref;QSS=23;QSS_NT=23;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=77840661;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	45:0:0:0:0,0:0,0:45,45:0,0	120:0:0:0:7,11:0,0:113,113:0,0
9	77840680	rs200950945	G	A	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=77840680;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:0:0:0:0,0:0,0:38,38:0,0	126:2:0:0:7,11:0,0:117,119:0,0
9	77840689	.	A	C	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:0:0:0:37,37:0,0:0,0:0,0	125:2:0:0:115,116:8,12:0,0:0,0
9	80363253	.	G	A	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||157|GNAQ|protein_coding|CODING|ENST00000397476|4|1),INTRON(MODIFIER||||359|GNAQ|protein_coding|CODING|ENST00000286548|5|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:0:0:0:0,0:0,0:34,34:0,0	110:0:0:0:11,11:0,0:99,99:0,0
9	80947009	.	C	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||324|PSAT1|protein_coding|CODING|ENST00000347159||1),DOWNSTREAM(MODIFIER||||370|PSAT1|protein_coding|CODING|ENST00000376588||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	52:2:0:0:0,0:49,51:1,1:0,0	106:2:0:0:0,0:98,101:6,6:0,0
9	82458366	.	C	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:0:0:0:0,0:31,32:0,0:0,0	99:1:0:0:1,2:90,90:7,7:0,0
9	82516298	.	C	A	.	PASS	NT=ref;QSS=26;QSS_NT=26;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	52:1:0:0:0,0:51,52:0,0:0,0	110:0:0:0:13,13:97,97:0,0:0,0
9	82867987	.	T	C	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:0:0:0:0,0:0,0:0,0:36,37	95:0:0:0:0,0:4,4:0,0:91,91
9	82996130	rs12683095	A	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=82996130;dbSNPBuildID=120;SSR=0;SAO=0;VP=050000000001000002000100;WGT=1;VC=SNV;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	44:17:0:0:27,45:0,0:0,0:0,0	104:39:0:0:60,100:5,5:0,0:0,0
9	83681511	.	A	T	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:0:0:0:38,39:0,0:0,0:0,0	113:1:0:0:105,106:0,0:1,1:6,6
9	83691149	.	T	G	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:0:0:0:0,0:0,0:0,0:34,35	115:0:0:0:0,0:0,0:8,8:107,107
9	84064889	.	G	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:0:0:0:0,0:0,0:29,29:0,0	82:1:0:0:0,0:0,1:75,75:6,6
9	85049528	.	T	G	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-15B24.5|lincRNA|NON_CODING|ENST00000585454|6|1),INTRON(MODIFIER|||||RP11-15B24.5|lincRNA|NON_CODING|ENST00000586214|7|1),INTRON(MODIFIER|||||RP11-15B24.5|lincRNA|NON_CODING|ENST00000586399|3|1),INTRON(MODIFIER|||||RP11-15B24.5|lincRNA|NON_CODING|ENST00000588368|6|1),INTRON(MODIFIER|||||RP11-15B24.5|lincRNA|NON_CODING|ENST00000588492|4|1),INTRON(MODIFIER|||||RP11-15B24.5|lincRNA|NON_CODING|ENST00000590250|6|1),INTRON(MODIFIER|||||RP11-15B24.5|lincRNA|NON_CODING|ENST00000590298|6|1),INTRON(MODIFIER|||||RP11-15B24.5|lincRNA|NON_CODING|ENST00000590667|6|1),INTRON(MODIFIER|||||RP11-15B24.5|lincRNA|NON_CODING|ENST00000590791|3|1),INTRON(MODIFIER|||||RP11-15B24.5|lincRNA|NON_CODING|ENST00000590903|5|1),INTRON(MODIFIER|||||RP11-15B24.5|lincRNA|NON_CODING|ENST00000591117|4|1),INTRON(MODIFIER|||||RP11-15B24.5|lincRNA|NON_CODING|ENST00000591257|5|1),UPSTREAM(MODIFIER|||||RP11-15B24.3|processed_pseudogene|NON_CODING|ENST00000438986||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:0:0:0:0,0:0,0:0,0:37,37	95:0:0:0:0,0:0,0:7,7:88,89
9	85497957	.	G	C	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:0:0:0:0,0:0,0:34,34:1,1	105:1:0:0:0,0:6,7:98,98:0,0
9	87054097	.	C	A	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:0:0:0:0,0:32,32:0,0:1,1	93:0:0:0:12,12:81,81:0,0:0,0
9	87912993	.	G	T	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:0:0:0:0,0:0,0:37,37:0,0	111:0:0:0:0,0:0,0:101,102:10,10
9	89289371	.	C	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-395D3.1|lincRNA|NON_CODING|ENST00000443163|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	28:0:0:0:0,0:28,28:0,0:0,0	111:0:0:0:0,0:103,103:0,0:8,8
9	89582562	.	C	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-276H19.1|processed_transcript|NON_CODING|ENST00000415801|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:1:0:0:0,0:35,35:0,1:0,0	118:1:0:0:0,0:111,111:0,0:6,7
9	90028675	.	T	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:0:0:0:0,0:0,0:0,0:31,31	74:0:0:0:0,0:5,6:0,0:69,72
9	90028752	.	C	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:0:0:0:0,0:30,30:0,0:0,0	77:0:0:0:0,0:72,74:5,6:0,0
9	90028765	.	C	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:0:0:0:0,0:31,31:0,0:0,0	81:0:0:0:0,0:76,78:0,0:5,6
9	90735243	rs664497	T	C	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=90735243;GMAF=0.0801;dbSNPBuildID=83;SSR=0;SAO=0;VP=050000000001040016000100;WGT=1;VC=SNV;VLD;KGPhase1;KGPROD;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	58:0:0:0:0,0:0,0:0,0:58,59	116:0:0:0:0,0:9,9:0,0:107,107
9	90767828	.	T	A	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=TT->AT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:1:0:0:0,0:0,0:0,1:33,33	86:2:0:0:12,12:0,0:0,0:72,74
9	91001224	.	G	C	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER||||262|SPIN1|protein_coding|CODING|ENST00000375859||1),UPSTREAM(MODIFIER||||262|SPIN1|protein_coding|CODING|ENST00000541629||1),UPSTREAM(MODIFIER|||||SPIN1|processed_transcript|CODING|ENST00000462844||1),UPSTREAM(MODIFIER|||||SPIN1|processed_transcript|CODING|ENST00000483785||1),UPSTREAM(MODIFIER|||||SPIN1|processed_transcript|CODING|ENST00000485565||1),UPSTREAM(MODIFIER|||||SPIN1|processed_transcript|CODING|ENST00000485804||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:0:0:0:0,0:0,0:37,37:1,1	98:1:0:0:0,0:5,5:90,92:2,2
9	91914884	.	G	A	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:1:0:0:0,0:0,0:39,41:0,0	95:2:0:0:7,7:0,0:86,89:0,1
9	92488536	.	C	A	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:1:0:0:0,0:34,35:0,0:0,0	92:2:0:0:5,6:85,86:0,0:0,0
9	93647052	.	C	T	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=CC->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER||||612|SYK|protein_coding|CODING|ENST00000375747|10|1),INTRON(MODIFIER||||612|SYK|protein_coding|CODING|ENST00000375751|10|1),INTRON(MODIFIER||||635|SYK|protein_coding|CODING|ENST00000375746|11|1),INTRON(MODIFIER||||635|SYK|protein_coding|CODING|ENST00000375754|11|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	48:5:0:0:0,0:43,62:0,0:0,2	152:21:0:0:0,1:125,182:0,0:6,15
9	94560844	.	A	G	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||704|ROR2|protein_coding|CODING|ENST00000375715|1|1),INTRON(MODIFIER||||943|ROR2|protein_coding|CODING|ENST00000375708|1|1),INTRON(MODIFIER|||||ROR2|processed_transcript|CODING|ENST00000495386|3|1),INTRON(MODIFIER|||||ROR2|processed_transcript|CODING|ENST00000546883|2|1),INTRON(MODIFIER|||||ROR2|processed_transcript|CODING|ENST00000550066|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:1:0:0:31,33:1,1:0,1:0,0	75:8:0:0:57,61:1,6:9,13:0,0
9	94711982	.	T	C	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||943|ROR2|protein_coding|CODING|ENST00000375708|1|1),INTRON(MODIFIER|||||ROR2|processed_transcript|CODING|ENST00000476440|1|1),UPSTREAM(MODIFIER||||704|ROR2|protein_coding|CODING|ENST00000375715||1),UPSTREAM(MODIFIER|||||ROR2|processed_transcript|CODING|ENST00000493846||1),UPSTREAM(MODIFIER|||||ROR2|processed_transcript|CODING|ENST00000495386||1),UPSTREAM(MODIFIER|||||ROR2|processed_transcript|CODING|ENST00000546883||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	62:0:0:0:0,0:1,1:1,1:60,60	111:1:0:0:1,1:8,8:1,1:100,101
9	95628803	.	G	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||816|ZNF484|protein_coding|CODING|ENST00000332591|1|1),INTRON(MODIFIER||||852|ZNF484|protein_coding|CODING|ENST00000375495|2|1),INTRON(MODIFIER||||854|ZNF484|protein_coding|CODING|ENST00000395506|1|1),INTRON(MODIFIER|||||ANKRD19P|processed_transcript|NON_CODING|ENST00000473204|8|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	41:1:0:0:0,1:0,0:40,44:0,0	118:3:0:0:6,13:0,0:109,116:0,0
9	95628844	.	C	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||816|ZNF484|protein_coding|CODING|ENST00000332591|1|1),INTRON(MODIFIER||||852|ZNF484|protein_coding|CODING|ENST00000375495|2|1),INTRON(MODIFIER||||854|ZNF484|protein_coding|CODING|ENST00000395506|1|1),INTRON(MODIFIER|||||ANKRD19P|processed_transcript|NON_CODING|ENST00000473204|8|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:0:0:0:0,0:39,43:1,1:0,1	114:0:0:0:1,1:108,114:0,0:5,11
9	97751812	.	T	C	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||508|C9orf3|protein_coding|CODING|ENST00000424143|8|1),INTRON(MODIFIER||||601|C9orf3|protein_coding|CODING|ENST00000428313|10|1),INTRON(MODIFIER||||720|C9orf3|protein_coding|CODING|ENST00000297979|9|1),INTRON(MODIFIER||||819|C9orf3|protein_coding|CODING|ENST00000375315|10|1),INTRON(MODIFIER|||||C9orf3|processed_transcript|CODING|ENST00000460573|2|1),INTRON(MODIFIER|||||C9orf3|processed_transcript|CODING|ENST00000462125|6|1),INTRON(MODIFIER|||||C9orf3|processed_transcript|CODING|ENST00000479161|7|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	43:1:0:0:0,0:0,0:0,0:42,43	87:4:0:0:0,0:5,6:0,0:78,82
9	98920216	.	G	C	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	54:16:0:0:1,6:0,2:37,99:0,1	145:33:7:0:0,6:7,16:104,273:1,3
9	99588532	.	G	C	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||204|ZNF782|protein_coding|CODING|ENST00000478850|4|1),INTRON(MODIFIER||||567|ZNF782|protein_coding|CODING|ENST00000535338|2|1),INTRON(MODIFIER||||699|ZNF782|protein_coding|CODING|ENST00000481138|5|1),INTRON(MODIFIER|||||ZNF782|processed_transcript|CODING|ENST00000466833|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	42:0:0:0:0,0:0,0:42,49:0,0	110:3:0:0:0,0:5,9:102,117:0,0
9	99750874	.	G	C	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||134|HIATL2|protein_coding|CODING|ENST00000375223|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:0:0:0:0,0:0,0:40,40:0,0	106:1:0:0:0,0:9,9:96,98:0,0
9	99969521	.	C	T	.	PASS	NT=ref;QSS=28;QSS_NT=28;SGT=CC->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER|||||ANKRD18CP|processed_transcript|NON_CODING|ENST00000354752|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	66:0:0:0:2,2:64,67:0,0:0,1	166:2:0:0:2,3:151,176:0,0:11,14
9	100568636	.	G	A	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-23B15.1|lincRNA|NON_CODING|ENST00000430058|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:0:0:0:0,0:0,0:36,36:0,0	119:0:0:0:11,11:1,1:107,107:0,0
9	101945167	.	G	C	.	PASS	NT=ref;QSS=24;QSS_NT=24;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||Metazoa_SRP|misc_RNA|NON_CODING|ENST00000469816||1),INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||RP11-96L7.2|lincRNA|NON_CODING|ENST00000450399||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	48:1:0:0:0,0:0,0:47,48:0,0	99:0:0:0:0,0:5,5:94,96:0,0
9	105776942	.	C	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||348|CYLC2|protein_coding|CODING|ENST00000374798|6|1),INTRON(MODIFIER||||348|CYLC2|protein_coding|CODING|ENST00000487798|6|1),INTRON(MODIFIER|||||CYLC2|processed_transcript|CODING|ENST00000590560|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:0:0:0:0,0:30,30:0,0:0,0	95:5:0:0:1,1:83,86:0,1:6,9
9	105812191	.	A	G	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	41:0:0:0:41,41:0,0:0,0:0,0	112:1:0:0:104,105:0,0:7,7:0,0
9	106318930	.	C	G	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	42:0:0:0:0,0:42,42:0,0:0,0	102:0:0:0:0,0:92,93:10,10:0,0
9	106648004	.	T	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->GT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	48:0:0:0:0,0:0,0:0,0:48,48	112:0:0:0:0,0:0,0:4,4:108,109
9	107391130	.	C	T	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	41:0:0:0:0,0:41,41:0,0:0,0	98:1:0:0:0,0:91,92:0,0:6,6
9	109571772	.	C	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	42:2:0:0:0,0:40,41:0,1:0,0	105:1:0:0:1,1:98,98:5,9:0,1
9	109571804	rs113808740	T	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=109571804;GMAF=0.0444;dbSNPBuildID=132;SSR=0;SAO=0;VP=050100000009040116000100;WGT=1;VC=SNV;SLO;CFL;VLD;GNO;KGPhase1;KGPROD;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:1:0:0:0,0:0,0:0,0:37,38	98:0:0:0:0,0:6,10:0,0:92,92
9	109571805	.	G	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:1:0:0:0,0:0,0:39,40:0,0	100:0:0:0:5,9:0,0:95,95:0,0
9	109571820	.	C	G	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	42:1:0:0:0,0:41,42:0,0:0,0	108:1:0:0:0,1:101,101:6,10:0,0
9	111216646	.	C	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:0:0:0:0,0:29,29:0,0:0,0	113:1:0:0:10,10:100,102:1,1:1,1
9	114637816	rs200023250	C	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->AC;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=114637816;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	47:2:0:0:0,1:45,49:0,0:0,0	99:2:0:0:9,12:88,108:0,0:0,0
9	115152222	.	G	A	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||213|HSDL2|protein_coding|CODING|ENST00000539114|1|1),INTRON(MODIFIER||||298|HSDL2|protein_coding|CODING|ENST00000262542|1|1),INTRON(MODIFIER||||345|HSDL2|protein_coding|CODING|ENST00000398803|1|1),INTRON(MODIFIER||||418|HSDL2|protein_coding|CODING|ENST00000398805|1|1),INTRON(MODIFIER|||||HSDL2|processed_transcript|CODING|ENST00000467434|1|1),INTRON(MODIFIER|||||HSDL2|processed_transcript|CODING|ENST00000488101|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:0:0:0:0,0:0,0:34,35:0,0	79:1:0:0:6,7:0,0:72,72:0,0
9	115629132	.	C	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||437|SNX30|protein_coding|CODING|ENST00000374232|8|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	27:1:0:0:0,0:26,29:0,0:0,0	78:8:0:0:0,0:62,69:0,0:8,9
9	116212626	rs112742300	C	T	.	PASS	NT=ref;QSS=29;QSS_NT=29;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1198|RGS3|protein_coding|CODING|ENST00000374140|1|1);RSPOS=116212626;GMAF=0.0293;dbSNPBuildID=132;SSR=0;SAO=0;VP=050000080005000116000100;GENEINFO=RGS3:5998;WGT=1;VC=SNV;INT;ASP;GNO;KGPhase1;KGPROD;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	60:1:0:0:0,0:59,60:0,0:0,0	134:0:0:0:0,0:127,129:0,0:7,7
9	121220663	.	A	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	26:0:0:0:26,26:0,0:0,0:0,0	107:0:0:0:93,93:14,14:0,0:0,0
9	123372170	.	T	A	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||602|MEGF9|protein_coding|CODING|ENST00000373930|4|1),INTRON(MODIFIER||||639|MEGF9|protein_coding|CODING|ENST00000426959|6|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:1:0:0:0,0:0,0:0,0:38,39	110:0:0:0:5,5:0,0:0,0:105,105
9	126345221	.	A	G	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||AL161790.1|miRNA|NON_CODING|ENST00000410790||1),INTRON(MODIFIER||||1009|DENND1A|protein_coding|CODING|ENST00000373624|12|1),INTRON(MODIFIER||||1020|DENND1A|protein_coding|CODING|ENST00000394219|10|1),INTRON(MODIFIER||||466|DENND1A|protein_coding|CODING|ENST00000373618|11|1),INTRON(MODIFIER||||529|DENND1A|protein_coding|CODING|ENST00000394215|11|1),INTRON(MODIFIER||||559|DENND1A|protein_coding|CODING|ENST00000373620|12|1),INTRON(MODIFIER||||794|DENND1A|protein_coding|CODING|ENST00000542603|4|1),INTRON(MODIFIER|||||DENND1A|processed_transcript|CODING|ENST00000473039|10|1),INTRON(MODIFIER|||||DENND1A|processed_transcript|CODING|ENST00000474676|7|1),INTRON(MODIFIER|||||DENND1A|processed_transcript|CODING|ENST00000491650|2|1),INTRON(MODIFIER|||||DENND1A|processed_transcript|CODING|ENST00000497135|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	41:0:0:0:41,41:0,0:0,0:0,0	86:4:0:0:75,77:0,0:7,11:0,0
9	130306988	.	G	C	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||733|FAM129B|protein_coding|CODING|ENST00000373314|1|1),INTRON(MODIFIER||||746|FAM129B|protein_coding|CODING|ENST00000373312|1|1),INTRON(MODIFIER|||||FAM129B|processed_transcript|CODING|ENST00000468379|1|1),INTRON(MODIFIER|||||FAM129B|processed_transcript|CODING|ENST00000478917|2|1),INTRON(MODIFIER|||||FAM129B|processed_transcript|CODING|ENST00000484348|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	44:0:0:0:0,0:0,0:44,44:0,0	112:0:0:0:0,0:8,8:104,104:0,0
9	131634177	.	C	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER||||250|CCBL1|protein_coding|CODING|ENST00000451800|1|1),INTRON(MODIFIER||||372|CCBL1|protein_coding|CODING|ENST00000320665|1|1),INTRON(MODIFIER||||422|CCBL1|protein_coding|CODING|ENST00000302586|1|1),INTRON(MODIFIER||||516|CCBL1|protein_coding|CODING|ENST00000436267|1|1),INTRON(MODIFIER|||||CCBL1|processed_transcript|CODING|ENST00000462722|1|1),INTRON(MODIFIER|||||CCBL1|processed_transcript|CODING|ENST00000474824|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	49:1:0:0:1,1:47,49:0,0:0,1	97:1:0:0:0,0:88,90:0,0:8,8
9	131796266	rs146520053	A	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER||||323|FAM73B|protein_coding|CODING|ENST00000277475||1),UPSTREAM(MODIFIER||||349|FAM73B|protein_coding|CODING|ENST00000406926||1),UPSTREAM(MODIFIER||||593|FAM73B|protein_coding|CODING|ENST00000358369||1),UPSTREAM(MODIFIER||||98|FAM73B|protein_coding|CODING|ENST00000450073||1),UPSTREAM(MODIFIER|||||FAM73B|nonsense_mediated_decay|CODING|ENST00000439290||1),UPSTREAM(MODIFIER|||||FAM73B|nonsense_mediated_decay|CODING|ENST00000445183||1),UPSTREAM(MODIFIER|||||FAM73B|processed_transcript|CODING|ENST00000474534||1),UPSTREAM(MODIFIER|||||FAM73B|processed_transcript|CODING|ENST00000477088||1);RSPOS=131796266;dbSNPBuildID=134;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	20:1:0:0:19,20:0,0:0,0:0,0	71:0:0:0:54,55:12,12:1,1:4,4
9	132347750	.	G	T	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||RP11-492E3.2|antisense|NON_CODING|ENST00000443993||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:0:0:0:0,0:0,0:40,40:0,0	82:1:0:0:0,0:0,0:76,77:5,5
9	132422326	.	C	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:0:0:0:0,0:34,34:0,0:0,0	110:0:0:0:6,6:104,104:0,0:0,0
9	132422333	.	G	A	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:0:0:0:0,0:0,0:36,36:0,0	111:0:0:0:7,7:0,0:104,104:0,0
9	132633881	.	C	T	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||USP20|processed_transcript|CODING|ENST00000491731||1),INTRON(MODIFIER||||914|USP20|protein_coding|CODING|ENST00000315480|15|1),INTRON(MODIFIER||||914|USP20|protein_coding|CODING|ENST00000358355|15|1),INTRON(MODIFIER||||914|USP20|protein_coding|CODING|ENST00000372429|15|1),INTRON(MODIFIER|||||USP20|processed_transcript|CODING|ENST00000474895|2|1),UPSTREAM(MODIFIER|||||USP20|processed_transcript|CODING|ENST00000496927||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	43:0:0:0:0,0:43,43:0,0:0,0	113:2:0:0:0,0:105,107:0,0:6,6
9	133236425	.	C	T	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRAGENIC(MODIFIER|||||HMCN2||CODING|||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	60:1:0:0:0,0:58,59:0,0:1,1	120:2:0:0:0,1:112,113:0,0:6,8
9	133653732	.	T	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER||||1149|ABL1|protein_coding|CODING|ENST00000372348|1|1),INTRON(MODIFIER||||63|ABL1|protein_coding|CODING|ENST00000393293|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:1:0:0:0,0:0,1:0,0:36,41	80:2:0:0:0,0:8,8:0,0:70,80
9	135161191	.	T	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||2644|SETX|protein_coding|CODING|ENST00000393220|18|1),INTRON(MODIFIER||||2677|SETX|protein_coding|CODING|ENST00000224140|18|1),INTRON(MODIFIER||||2706|SETX|protein_coding|CODING|ENST00000372169|18|1),INTRON(MODIFIER||||948|SETX|protein_coding|CODING|ENST00000436441|8|1),INTRON(MODIFIER|||||SETX|processed_transcript|CODING|ENST00000474172|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:1:0:0:0,0:0,0:0,1:29,29	99:2:0:0:0,0:8,10:1,1:88,90
9	136352388	.	A	T	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:0:0:0:40,40:0,0:0,0:0,0	81:2:0:0:71,73:1,1:0,0:7,7
9	136633077	.	G	A	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||839|VAV2|protein_coding|CODING|ENST00000406606|26|1),INTRON(MODIFIER||||868|VAV2|protein_coding|CODING|ENST00000371851|27|1),INTRON(MODIFIER||||878|VAV2|protein_coding|CODING|ENST00000371850|29|1),UPSTREAM(MODIFIER|||||AL590710.1|pseudogene|NON_CODING|ENST00000343203||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:0:0:0:0,0:0,0:39,40:0,0	93:2:0:0:5,5:0,0:86,89:0,0
9	137372598	.	A	C	.	PASS	NT=ref;QSS=26;QSS_NT=26;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	51:0:0:0:51,54:0,0:0,0:0,0	101:5:0:0:89,94:7,9:0,0:0,0
9	137651245	.	A	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1838|COL5A1|protein_coding|CODING|ENST00000371817|18|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:4:28:0:30,35:0,0:0,0:0,0	58:9:84:0:45,55:0,2:4,7:0,0
9	137873871	.	A	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=AA->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	43:1:0:0:41,42:0,0:1,1:0,0	76:4:0:0:67,73:0,0:5,5:0,0
9	138142331	.	A	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=AA->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER|||||RP11-399H11.2|lincRNA|NON_CODING|ENST00000420883|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	42:2:0:0:40,45:0,0:0,1:0,0	75:0:0:0:68,83:1,1:6,7:0,0
9	138666065	.	G	T	.	PASS	NT=ref;QSS=24;QSS_NT=24;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1211|KCNT1|protein_coding|CODING|ENST00000487664|18|1),INTRON(MODIFIER||||1215|KCNT1|protein_coding|CODING|ENST00000486577|19|1),INTRON(MODIFIER||||1223|KCNT1|protein_coding|CODING|ENST00000491806|18|1),INTRON(MODIFIER||||1230|KCNT1|protein_coding|CODING|ENST00000263604|19|1),INTRON(MODIFIER||||1235|KCNT1|protein_coding|CODING|ENST00000371757|19|1),INTRON(MODIFIER||||1235|KCNT1|protein_coding|CODING|ENST00000490355|19|1),INTRON(MODIFIER||||1237|KCNT1|protein_coding|CODING|ENST00000488444|19|1),INTRON(MODIFIER||||1256|KCNT1|protein_coding|CODING|ENST00000298480|19|1),INTRON(MODIFIER|||||KCNT1|nonsense_mediated_decay|CODING|ENST00000460750|19|1),INTRON(MODIFIER|||||KCNT1|retained_intron|CODING|ENST00000490363|14|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	50:3:0:0:0,0:0,0:47,59:0,1	106:6:0:0:0,0:0,0:94,118:6,12
9	139411680	.	A	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||MIR4673|miRNA|NON_CODING|ENST00000584777||1),INTRON(MODIFIER||||2555|NOTCH1|protein_coding|CODING|ENST00000277541|9|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	49:1:0:0:47,48:0,0:1,1:0,0	108:2:0:0:97,100:0,0:9,9:0,0
9	139476173	.	G	A	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	45:0:0:0:0,0:0,0:45,46:0,0	95:5:0:0:8,13:2,2:80,83:0,1
9	139526543	.	A	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	47:2:0:0:43,47:1,1:1,1:0,0	89:1:0:0:83,94:0,0:5,5:0,0
9	139711963	.	A	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||314|RABL6|protein_coding|CODING|ENST00000371671|1|1),INTRON(MODIFIER||||520|RABL6|protein_coding|CODING|ENST00000357466|1|1),INTRON(MODIFIER||||729|RABL6|protein_coding|CODING|ENST00000311502|1|1),INTRON(MODIFIER||||730|RABL6|protein_coding|CODING|ENST00000371663|1|1),INTRON(MODIFIER|||||RABL6|nonsense_mediated_decay|CODING|ENST00000484471|1|1),INTRON(MODIFIER|||||RABL6|processed_transcript|CODING|ENST00000471502|2|1),UPSTREAM(MODIFIER||||471|RABL6|protein_coding|CODING|ENST00000432842||1),UPSTREAM(MODIFIER|||||NCLP1|processed_pseudogene|NON_CODING|ENST00000445357||1),UPSTREAM(MODIFIER|||||RABL6|nonsense_mediated_decay|CODING|ENST00000464941||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	47:1:0:0:45,47:0,0:1,1:0,0	88:1:0:0:81,83:0,0:0,0:6,6
9	139727415	.	A	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||MIR4292|miRNA|NON_CODING|ENST00000585012||1),DOWNSTREAM(MODIFIER|||||RABL6|processed_transcript|CODING|ENST00000471502||1),INTRON(MODIFIER||||314|RABL6|protein_coding|CODING|ENST00000371671|7|1),INTRON(MODIFIER||||471|RABL6|protein_coding|CODING|ENST00000432842|7|1),INTRON(MODIFIER||||520|RABL6|protein_coding|CODING|ENST00000357466|7|1),INTRON(MODIFIER||||614|RABL6|protein_coding|CODING|ENST00000371675|7|1),INTRON(MODIFIER||||729|RABL6|protein_coding|CODING|ENST00000311502|7|1),INTRON(MODIFIER||||730|RABL6|protein_coding|CODING|ENST00000371663|7|1),INTRON(MODIFIER|||||RABL6|nonsense_mediated_decay|CODING|ENST00000464941|7|1),INTRON(MODIFIER|||||RABL6|nonsense_mediated_decay|CODING|ENST00000484471|7|1),INTRON(MODIFIER|||||RABL6|processed_transcript|CODING|ENST00000461992|4|1),INTRON(MODIFIER|||||RABL6|processed_transcript|CODING|ENST00000466096|3|1),UPSTREAM(MODIFIER||||447|RABL6|protein_coding|CODING|ENST00000435930||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:1:0:0:29,31:0,0:2,2:0,0	121:8:0:0:101,108:8,8:4,8:0,0
9	139904959	.	A	C	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=AA->AC;SOMATIC;TQSS=2;TQSS_NT=2;EFF=DOWNSTREAM(MODIFIER|||||ABCA2|nonsense_mediated_decay|CODING|ENST00000488535||1),DOWNSTREAM(MODIFIER|||||ABCA2|retained_intron|CODING|ENST00000431584||1),INTRON(MODIFIER||||2435|ABCA2|protein_coding|CODING|ENST00000371605|39|1),INTRON(MODIFIER||||2436|ABCA2|protein_coding|CODING|ENST00000265662|40|1),INTRON(MODIFIER||||2436|ABCA2|protein_coding|CODING|ENST00000341511|40|1),INTRON(MODIFIER|||||ABCA2|nonsense_mediated_decay|CODING|ENST00000459850|38|1),INTRON(MODIFIER|||||ABCA2|nonsense_mediated_decay|CODING|ENST00000487109|38|1),INTRON(MODIFIER|||||ABCA2|processed_transcript|CODING|ENST00000463603|2|1),UPSTREAM(MODIFIER||||183|ABCA2|protein_coding|CODING|ENST00000448336||1),UPSTREAM(MODIFIER||||195|ABCA2|protein_coding|CODING|ENST00000490486||1),UPSTREAM(MODIFIER|||||ABCA2|processed_transcript|CODING|ENST00000437791||1),UPSTREAM(MODIFIER|||||ABCA2|processed_transcript|CODING|ENST00000464157||1),UPSTREAM(MODIFIER|||||ABCA2|retained_intron|CODING|ENST00000464520||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	28:3:0:0:25,26:0,1:0,1:0,0	82:7:0:0:58,59:15,19:2,3:0,0
9	140273347	rs201131228	G	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||246|EXD3|protein_coding|CODING|ENST00000479452|3|1),INTRON(MODIFIER||||514|EXD3|protein_coding|CODING|ENST00000342129|3|1),INTRON(MODIFIER||||876|EXD3|protein_coding|CODING|ENST00000340951|3|1),INTRON(MODIFIER|||||EXD3|nonsense_mediated_decay|CODING|ENST00000460390|4|1),INTRON(MODIFIER|||||EXD3|processed_transcript|CODING|ENST00000475006|3|1),INTRON(MODIFIER|||||EXD3|processed_transcript|CODING|ENST00000490886|2|1);RSPOS=140273347;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000080005000002000100;WGT=1;VC=SNV;INT;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:4:0:0:0,0:0,0:33,44:0,0	93:7:0:0:6,6:0,0:80,106:0,0
9	140275537	.	G	A	.	PASS	NT=ref;QSS=23;QSS_NT=23;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||246|EXD3|protein_coding|CODING|ENST00000479452|3|1),INTRON(MODIFIER||||514|EXD3|protein_coding|CODING|ENST00000342129|3|1),INTRON(MODIFIER||||876|EXD3|protein_coding|CODING|ENST00000340951|3|1),INTRON(MODIFIER|||||EXD3|nonsense_mediated_decay|CODING|ENST00000460390|4|1),INTRON(MODIFIER|||||EXD3|processed_transcript|CODING|ENST00000475006|3|1),INTRON(MODIFIER|||||EXD3|processed_transcript|CODING|ENST00000490886|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	46:1:0:0:0,0:0,0:45,55:0,0	71:0:0:0:8,9:0,0:63,78:0,0
9	140423432	.	G	A	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1280|PNPLA7|protein_coding|CODING|ENST00000434090|7|1),INTRON(MODIFIER||||1317|PNPLA7|protein_coding|CODING|ENST00000277531|7|1),INTRON(MODIFIER||||1342|PNPLA7|protein_coding|CODING|ENST00000406427|8|1),INTRON(MODIFIER|||||PNPLA7|nonsense_mediated_decay|CODING|ENST00000491019|6|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	44:0:0:0:0,0:0,0:44,44:0,0	98:1:0:0:5,5:1,1:91,92:0,0
9	140610987	rs113181161	G	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1298|EHMT1|protein_coding|CODING|ENST00000460843|2|1),INTRON(MODIFIER||||808|EHMT1|protein_coding|CODING|ENST00000462484|2|1),INTRON(MODIFIER||||825|EHMT1|protein_coding|CODING|ENST00000334856|2|1),INTRON(MODIFIER|||||EHMT1|processed_transcript|CODING|ENST00000371394|1|1),INTRON(MODIFIER|||||EHMT1|processed_transcript|CODING|ENST00000460486|2|1),INTRON(MODIFIER|||||EHMT1|processed_transcript|CODING|ENST00000492232|2|1),UPSTREAM(MODIFIER|||||EHMT1|processed_transcript|CODING|ENST00000495657||1);RSPOS=140610987;dbSNPBuildID=132;SSR=0;SAO=0;VP=050100080001040102000100;GENEINFO=EHMT1:79813;WGT=1;VC=SNV;SLO;INT;VLD;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:5:0:0:0,0:0,1:29,62:0,1	93:6:0:0:0,1:0,0:81,128:6,17
9	140668792	.	T	C	.	PASS	NT=ref;QSS=23;QSS_NT=23;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1298|EHMT1|protein_coding|CODING|ENST00000460843|10|1),INTRON(MODIFIER||||808|EHMT1|protein_coding|CODING|ENST00000462484|10|1),INTRON(MODIFIER||||825|EHMT1|protein_coding|CODING|ENST00000334856|10|1),INTRON(MODIFIER|||||EHMT1|nonsense_mediated_decay|CODING|ENST00000462942|5|1),INTRON(MODIFIER|||||EHMT1|processed_transcript|CODING|ENST00000371394|9|1),INTRON(MODIFIER|||||EHMT1|processed_transcript|CODING|ENST00000465566|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	47:1:0:0:0,0:0,0:0,1:46,47	114:0:0:0:0,0:8,8:1,1:105,108
9	140669273	.	G	A	.	PASS	NT=ref;QSS=26;QSS_NT=26;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1298|EHMT1|protein_coding|CODING|ENST00000460843|10|1),INTRON(MODIFIER||||808|EHMT1|protein_coding|CODING|ENST00000462484|10|1),INTRON(MODIFIER||||825|EHMT1|protein_coding|CODING|ENST00000334856|10|1),INTRON(MODIFIER|||||EHMT1|nonsense_mediated_decay|CODING|ENST00000462942|5|1),INTRON(MODIFIER|||||EHMT1|processed_transcript|CODING|ENST00000371394|9|1),INTRON(MODIFIER|||||EHMT1|processed_transcript|CODING|ENST00000465566|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	56:3:0:0:0,0:0,0:53,57:0,0	115:4:0:0:6,6:0,0:105,115:0,0
10	117892	rs140306090	A	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=117892;dbSNPBuildID=134;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:1:0:0:29,30:0,0:0,0:0,0	114:1:0:0:105,106:0,0:8,13:0,0
10	494262	.	T	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1556|DIP2C|protein_coding|CODING|ENST00000280886|3|1),INTRON(MODIFIER||||186|DIP2C|protein_coding|CODING|ENST00000423550|4|1),INTRON(MODIFIER||||656|DIP2C|protein_coding|CODING|ENST00000381496|4|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:4:0:0:0,0:0,0:0,0:31,36	68:7:0:0:0,0:8,9:0,0:53,61
10	602015	.	A	G	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1556|DIP2C|protein_coding|CODING|ENST00000280886|1|1),INTRON(MODIFIER||||186|DIP2C|protein_coding|CODING|ENST00000423550|1|1),INTRON(MODIFIER||||656|DIP2C|protein_coding|CODING|ENST00000381496|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:0:0:0:33,35:0,0:0,0:0,0	96:3:1:0:85,92:1,1:6,6:1,1
10	633567	.	C	G	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1556|DIP2C|protein_coding|CODING|ENST00000280886|1|1),INTRON(MODIFIER||||186|DIP2C|protein_coding|CODING|ENST00000423550|1|1),UPSTREAM(MODIFIER||||656|DIP2C|protein_coding|CODING|ENST00000381496||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:2:0:0:0,0:37,44:0,0:0,0	106:5:0:0:1,1:91,103:9,10:0,0
10	764397	rs76798902	C	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=764397;GMAF=0.0701;dbSNPBuildID=131;SSR=0;SAO=0;VP=050000000001070116000100;WGT=1;VC=SNV;VLD;G5A;G5;GNO;KGPhase1;KGPROD;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:2:0:0:0,0:34,37:0,0:0,0	104:2:0:0:0,0:93,97:0,0:9,9
10	1061321	rs12254657	T	G	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||227|IDI2|protein_coding|CODING|ENST00000277517||1),DOWNSTREAM(MODIFIER|||||GTPBP4|processed_transcript|CODING|ENST00000491635||1),INTRON(MODIFIER||||518|GTPBP4|protein_coding|CODING|ENST00000538293|14|1),INTRON(MODIFIER||||587|GTPBP4|protein_coding|CODING|ENST00000545048|15|1),INTRON(MODIFIER||||634|GTPBP4|protein_coding|CODING|ENST00000360803|15|1),INTRON(MODIFIER|||||GTPBP4|processed_transcript|CODING|ENST00000483839|2|1);RSPOS=1061321;GMAF=0.0563;dbSNPBuildID=120;SSR=0;SAO=0;VP=050000080001040016000100;GENEINFO=GTPBP4:23560;WGT=1;VC=SNV;INT;VLD;KGPhase1;KGPROD;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	54:0:0:0:2,2:0,0:1,1:51,54	98:5:0:0:0,1:2,2:6,10:85,96
10	1138196	.	C	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||208|WDR37|protein_coding|CODING|ENST00000436154|6|1),INTRON(MODIFIER||||249|WDR37|protein_coding|CODING|ENST00000381329|7|1),INTRON(MODIFIER||||494|WDR37|protein_coding|CODING|ENST00000263150|7|1),INTRON(MODIFIER||||494|WDR37|protein_coding|CODING|ENST00000358220|7|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:0:0:0:0,0:30,31:0,0:0,0	104:4:0:0:0,0:94,98:0,0:6,6
10	1255267	.	G	A	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||739|ADARB2|protein_coding|CODING|ENST00000381312|7|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	53:2:0:0:1,1:0,0:50,52:0,0	94:8:0:0:8,11:0,0:78,84:0,0
10	1394975	rs146915235	C	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER||||739|ADARB2|protein_coding|CODING|ENST00000381312|3|1);RSPOS=1394975;dbSNPBuildID=134;SSR=0;SAO=0;VP=050000080005000002000100;GENEINFO=ADARB2:105;WGT=1;VC=SNV;INT;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	48:0:0:0:0,0:48,49:0,0:0,1	96:1:0:0:0,0:91,92:0,0:4,4
10	1635469	.	A	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||739|ADARB2|protein_coding|CODING|ENST00000381312|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	43:2:0:0:40,66:1,1:0,0:0,0	99:9:0:0:81,127:7,10:2,2:0,1
10	1702265	rs76486731	A	G	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||739|ADARB2|protein_coding|CODING|ENST00000381312|1|1);RSPOS=1702265;dbSNPBuildID=131;SSR=0;SAO=0;VP=050000080005000102000100;GENEINFO=ADARB2:105;WGT=1;VC=SNV;INT;ASP;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	48:2:0:0:45,47:0,0:1,1:0,0	110:4:0:0:97,100:0,1:9,11:0,0
10	2118470	.	T	G	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||RP11-69C17.2|lincRNA|NON_CODING|ENST00000450757||1),INTRON(MODIFIER|||||RP11-69C17.2|lincRNA|NON_CODING|ENST00000435539|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	43:0:0:0:0,0:0,0:1,1:42,42	84:1:0:0:0,0:0,0:10,11:73,73
10	2185483	.	T	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:1:0:0:0,0:0,1:0,1:39,40	75:2:1:0:0,0:6,6:0,2:67,71
10	2543964	.	C	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->CG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=DOWNSTREAM(MODIFIER|||||RP11-526P5.1|lincRNA|NON_CODING|ENST00000431209||1),INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||RP11-526P5.2|lincRNA|NON_CODING|ENST00000437289||1),UPSTREAM(MODIFIER|||||RP11-526P5.2|lincRNA|NON_CODING|ENST00000438753||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	45:2:0:0:0,0:43,62:0,1:0,0	108:4:0:0:0,0:97,141:7,9:0,0
10	6476133	.	C	T	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||581|PRKCQ|protein_coding|CODING|ENST00000539722|15|1),INTRON(MODIFIER||||643|PRKCQ|protein_coding|CODING|ENST00000397176|15|1),INTRON(MODIFIER||||706|PRKCQ|protein_coding|CODING|ENST00000263125|16|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	41:0:0:0:0,0:41,41:0,0:0,0	99:2:0:0:0,0:89,90:0,1:8,8
10	7667877	.	G	A	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||695|ITIH5|protein_coding|CODING|ENST00000397146|5|1),INTRON(MODIFIER||||702|ITIH5|protein_coding|CODING|ENST00000397145|5|1),INTRON(MODIFIER||||723|ITIH5|protein_coding|CODING|ENST00000446830|5|1),INTRON(MODIFIER||||956|ITIH5|protein_coding|CODING|ENST00000256861|5|1),INTRON(MODIFIER|||||ITIH5|processed_transcript|CODING|ENST00000434980|2|1),UPSTREAM(MODIFIER|||||ITIH5|retained_intron|CODING|ENST00000476417||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:0:0:0:0,0:0,0:39,39:0,0	130:0:0:0:9,9:0,0:121,122:0,0
10	7996971	.	A	G	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||929|TAF3|protein_coding|CODING|ENST00000344293|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:1:0:0:32,34:0,0:0,0:0,1	98:3:0:0:85,98:1,1:9,10:0,0
10	9472616	.	G	T	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:0:0:0:0,0:0,0:40,41:0,0	100:0:0:0:0,0:0,0:88,88:12,12
10	9502602	.	A	G	.	PASS	NT=ref;QSS=23;QSS_NT=23;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	47:1:0:0:46,46:0,0:0,0:0,0	120:2:0:0:110,112:0,0:8,9:0,0
10	9526421	.	A	G	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:0:0:0:37,37:0,0:0,0:0,0	114:0:0:0:107,107:0,0:7,7:0,0
10	10308709	rs200105053	C	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=10308709;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	16:0:0:0:0,0:16,27:0,1:0,0	58:0:0:0:0,0:47,68:11,17:0,0
10	10661807	.	C	T	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	42:0:0:0:0,0:42,42:0,0:0,0	100:2:0:0:0,0:93,96:0,0:5,5
10	11411414	rs74594662	C	T	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=11411414;dbSNPBuildID=131;SSR=0;SAO=0;VP=050000000005000102000100;WGT=1;VC=SNV;ASP;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	46:2:0:0:0,0:44,46:0,0:0,1	113:3:0:0:1,1:97,98:0,0:12,21
10	15037574	.	C	T	.	PASS	NT=ref;QSS=23;QSS_NT=23;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||OR7E26P|unprocessed_pseudogene|NON_CODING|ENST00000502808||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	46:0:0:0:0,0:46,47:0,0:0,0	112:2:0:0:0,0:104,105:0,0:6,15
10	15979533	.	G	A	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	45:1:0:0:0,0:0,0:44,45:0,0	117:2:0:0:7,7:0,0:108,110:0,0
10	16135901	.	T	A	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:0:0:0:0,0:0,0:0,0:35,35	94:0:0:0:5,5:0,0:0,0:89,90
10	21629654	.	C	T	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-275N1.1|lincRNA|NON_CODING|ENST00000433460|4|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:0:0:0:0,0:40,40:0,0:0,0	93:2:0:0:0,0:86,88:0,0:5,5
10	23105844	.	G	A	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	41:0:0:0:0,0:0,0:41,42:0,0	96:0:0:0:9,9:0,0:87,88:0,0
10	26005592	.	T	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	27:0:0:0:0,0:0,0:0,0:27,27	96:1:0:0:0,0:5,6:0,0:90,91
10	26231445	.	T	C	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1616|MYO3A|protein_coding|CODING|ENST00000265944|2|1),INTRON(MODIFIER||||247|MYO3A|protein_coding|CODING|ENST00000376302|2|1),INTRON(MODIFIER||||664|MYO3A|protein_coding|CODING|ENST00000543632|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:0:0:0:0,0:0,0:0,0:40,40	104:0:0:0:0,0:8,8:0,0:96,96
10	26281404	rs201699055	T	C	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1616|MYO3A|protein_coding|CODING|ENST00000265944|4|1),INTRON(MODIFIER||||197|MYO3A|protein_coding|CODING|ENST00000376301|2|1),INTRON(MODIFIER||||247|MYO3A|protein_coding|CODING|ENST00000376302|4|1),INTRON(MODIFIER||||664|MYO3A|protein_coding|CODING|ENST00000543632|3|1);RSPOS=26281404;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000080005000002000100;WGT=1;VC=SNV;INT;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	53:1:0:0:0,0:0,0:0,0:52,52	111:1:0:0:0,0:5,9:1,1:104,105
10	26281447	rs199997609	T	A	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1616|MYO3A|protein_coding|CODING|ENST00000265944|4|1),INTRON(MODIFIER||||197|MYO3A|protein_coding|CODING|ENST00000376301|2|1),INTRON(MODIFIER||||247|MYO3A|protein_coding|CODING|ENST00000376302|4|1),INTRON(MODIFIER||||664|MYO3A|protein_coding|CODING|ENST00000543632|3|1);RSPOS=26281447;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000080005000002000100;WGT=1;VC=SNV;INT;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	49:0:0:0:0,0:0,0:0,0:49,49	115:0:0:0:5,9:0,0:0,0:110,110
10	26281448	rs201170648	T	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1616|MYO3A|protein_coding|CODING|ENST00000265944|4|1),INTRON(MODIFIER||||197|MYO3A|protein_coding|CODING|ENST00000376301|2|1),INTRON(MODIFIER||||247|MYO3A|protein_coding|CODING|ENST00000376302|4|1),INTRON(MODIFIER||||664|MYO3A|protein_coding|CODING|ENST00000543632|3|1);RSPOS=26281448;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000080005000002000100;WGT=1;VC=SNV;INT;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	49:0:0:0:0,0:0,0:0,0:49,49	115:0:0:0:5,9:0,0:0,0:110,110
10	26281481	.	T	C	.	PASS	NT=ref;QSS=24;QSS_NT=24;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1616|MYO3A|protein_coding|CODING|ENST00000265944|4|1),INTRON(MODIFIER||||197|MYO3A|protein_coding|CODING|ENST00000376301|2|1),INTRON(MODIFIER||||247|MYO3A|protein_coding|CODING|ENST00000376302|4|1),INTRON(MODIFIER||||664|MYO3A|protein_coding|CODING|ENST00000543632|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	48:0:0:0:0,0:0,0:0,0:48,48	111:1:0:0:0,0:6,9:0,1:104,104
10	26877625	.	C	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||LINC00264|lincRNA|NON_CODING|ENST00000412114||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	53:1:0:0:0,0:52,53:0,0:0,0	110:3:0:0:0,0:102,104:0,0:5,5
10	27216158	rs113983881	A	G	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||LINC00202|lincRNA|NON_CODING|ENST00000431296||1),DOWNSTREAM(MODIFIER|||||LINC00202|lincRNA|NON_CODING|ENST00000458084||1),DOWNSTREAM(MODIFIER|||||LINC00202|lincRNA|NON_CODING|ENST00000458682||1),INTERGENIC(MODIFIER||||||||||1);RSPOS=27216158;dbSNPBuildID=132;SSR=0;SAO=0;VP=050100000001000102000100;WGT=1;VC=SNV;SLO;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:1:0:0:35,36:0,0:0,0:0,0	96:0:0:0:91,91:0,0:5,5:0,0
10	29762363	.	C	G	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||RP11-534G20.3|antisense|NON_CODING|ENST00000455774||1),DOWNSTREAM(MODIFIER|||||SVIL|processed_transcript|CODING|ENST00000460007||1),INTRON(MODIFIER||||1128|SVIL|protein_coding|CODING|ENST00000535393|16|1),INTRON(MODIFIER||||1788|SVIL|protein_coding|CODING|ENST00000375400|28|1),INTRON(MODIFIER||||2214|SVIL|protein_coding|CODING|ENST00000355867|30|1),INTRON(MODIFIER||||2214|SVIL|protein_coding|CODING|ENST00000375398|32|1),INTRON(MODIFIER|||||RP11-534G20.3|antisense|NON_CODING|ENST00000413405|2|1),INTRON(MODIFIER|||||RP11-534G20.3|antisense|NON_CODING|ENST00000414457|2|1),INTRON(MODIFIER|||||RP11-534G20.3|antisense|NON_CODING|ENST00000423223|2|1),INTRON(MODIFIER|||||RP11-534G20.3|antisense|NON_CODING|ENST00000446807|3|1),INTRON(MODIFIER|||||SVIL|processed_transcript|CODING|ENST00000484139|2|1),INTRON(MODIFIER|||||SVIL|processed_transcript|CODING|ENST00000497265|14|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	43:0:0:0:0,0:43,43:0,0:0,0	99:1:0:0:0,0:94,95:4,6:0,0
10	31190312	.	C	G	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||392|ZNF438|protein_coding|CODING|ENST00000375311|3|1),INTRON(MODIFIER||||779|ZNF438|protein_coding|CODING|ENST00000538351|4|1),INTRON(MODIFIER||||818|ZNF438|protein_coding|CODING|ENST00000331737|4|1),INTRON(MODIFIER||||818|ZNF438|protein_coding|CODING|ENST00000452305|5|1),INTRON(MODIFIER||||828|ZNF438|protein_coding|CODING|ENST00000361310|4|1),INTRON(MODIFIER||||828|ZNF438|protein_coding|CODING|ENST00000413025|3|1),INTRON(MODIFIER||||828|ZNF438|protein_coding|CODING|ENST00000436087|5|1),INTRON(MODIFIER||||828|ZNF438|protein_coding|CODING|ENST00000442986|5|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	46:0:0:0:0,0:46,47:0,0:0,0	102:2:0:0:0,0:94,96:6,6:0,0
10	31239469	.	A	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||392|ZNF438|protein_coding|CODING|ENST00000375311|1|1),INTRON(MODIFIER||||779|ZNF438|protein_coding|CODING|ENST00000538351|2|1),INTRON(MODIFIER||||818|ZNF438|protein_coding|CODING|ENST00000331737|1|1),INTRON(MODIFIER||||818|ZNF438|protein_coding|CODING|ENST00000452305|2|1),INTRON(MODIFIER||||828|ZNF438|protein_coding|CODING|ENST00000361310|1|1),INTRON(MODIFIER||||828|ZNF438|protein_coding|CODING|ENST00000413025|1|1),INTRON(MODIFIER||||828|ZNF438|protein_coding|CODING|ENST00000436087|2|1),INTRON(MODIFIER||||828|ZNF438|protein_coding|CODING|ENST00000442986|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	27:0:0:0:27,28:0,0:0,0:0,0	103:0:0:0:97,100:0,0:6,9:0,0
10	32461053	.	C	T	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||U7|snRNA|NON_CODING|ENST00000516673||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:2:0:0:0,0:38,41:0,0:0,0	92:3:0:0:0,0:83,88:0,0:6,7
10	33705408	.	C	A	.	PASS	NT=ref;QSS=23;QSS_NT=23;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	46:0:0:0:0,0:46,46:0,0:0,0	99:0:0:0:10,10:89,89:0,0:0,0
10	34177635	.	A	G	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	48:10:0:0:38,48:0,0:0,1:0,0	65:20:0:0:40,65:0,0:5,6:0,0
10	35808244	.	C	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||CCNY|processed_transcript|CODING|ENST00000490012||1),INTRON(MODIFIER||||208|CCNY|protein_coding|CODING|ENST00000456784|3|1),INTRON(MODIFIER||||287|CCNY|protein_coding|CODING|ENST00000265375|4|1),INTRON(MODIFIER||||287|CCNY|protein_coding|CODING|ENST00000374706|6|1),INTRON(MODIFIER||||316|CCNY|protein_coding|CODING|ENST00000339497|3|1),INTRON(MODIFIER||||341|CCNY|protein_coding|CODING|ENST00000374704|4|1),INTRON(MODIFIER||||341|CCNY|protein_coding|CODING|ENST00000537547|5|1),INTRON(MODIFIER|||||CCNY|processed_transcript|CODING|ENST00000492478|5|1),INTRON(MODIFIER|||||CCNY|processed_transcript|CODING|ENST00000493157|8|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:2:0:0:0,0:31,35:1,1:0,0	93:0:0:0:0,0:78,82:15,15:0,0
10	35839218	.	T	C	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||208|CCNY|protein_coding|CODING|ENST00000456784|5|1),INTRON(MODIFIER||||287|CCNY|protein_coding|CODING|ENST00000265375|7|1),INTRON(MODIFIER||||287|CCNY|protein_coding|CODING|ENST00000374706|9|1),INTRON(MODIFIER||||316|CCNY|protein_coding|CODING|ENST00000339497|6|1),INTRON(MODIFIER||||341|CCNY|protein_coding|CODING|ENST00000374704|7|1),INTRON(MODIFIER||||341|CCNY|protein_coding|CODING|ENST00000537547|8|1),INTRON(MODIFIER|||||CCNY|processed_transcript|CODING|ENST00000465416|2|1),INTRON(MODIFIER|||||CCNY|processed_transcript|CODING|ENST00000492478|8|1),INTRON(MODIFIER|||||CCNY|processed_transcript|CODING|ENST00000497692|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:0:0:0:0,0:0,0:0,0:38,40	128:2:0:0:0,0:9,10:0,0:117,123
10	36557675	.	A	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:3:0:0:30,32:0,1:0,0:0,0	79:0:0:0:73,73:0,0:6,6:0,0
10	36663946	.	C	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	46:1:0:0:0,0:45,46:0,0:0,0	99:4:0:0:0,0:87,91:0,0:8,8
10	36727169	.	G	A	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||MTND4P18|processed_pseudogene|NON_CODING|ENST00000447010||1),UPSTREAM(MODIFIER|||||MTND5P17|processed_pseudogene|NON_CODING|ENST00000418405||1),UPSTREAM(MODIFIER|||||RP11-92J19.3|lincRNA|NON_CODING|ENST00000418875||1),UPSTREAM(MODIFIER|||||RP11-92J19.3|lincRNA|NON_CODING|ENST00000426283||1),UPSTREAM(MODIFIER|||||SNORA40|snoRNA|NON_CODING|ENST00000390846||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:0:0:0:0,0:0,0:34,34:0,0	88:0:0:0:6,6:0,0:82,85:0,0
10	36947761	.	T	A	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	42:2:0:0:0,0:0,0:0,0:40,44	85:2:0:0:7,8:0,1:1,1:75,75
10	37069010	.	T	C	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:1:0:0:0,0:0,0:0,0:39,40	103:2:0:0:0,0:6,7:0,0:95,96
10	37326420	.	G	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:0:0:0:0,0:0,0:32,32:0,0	81:0:0:0:7,7:0,0:73,73:1,1
10	38235398	.	A	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||420|ZNF25|protein_coding|CODING|ENST00000374633||1),DOWNSTREAM(MODIFIER||||456|ZNF25|protein_coding|CODING|ENST00000302609||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:0:0:0:40,40:0,0:0,0:0,0	108:3:0:0:99,103:0,1:0,0:6,7
10	38261314	.	T	A	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||420|ZNF25|protein_coding|CODING|ENST00000374633|1|1),INTRON(MODIFIER||||456|ZNF25|protein_coding|CODING|ENST00000302609|1|1),INTRON(MODIFIER|||||ZNF25|processed_transcript|CODING|ENST00000467975|1|1),UPSTREAM(MODIFIER|||||RP11-393J16.4|lincRNA|NON_CODING|ENST00000412789||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	45:1:0:0:0,0:0,0:0,0:44,45	107:1:0:0:7,7:0,0:2,2:97,97
10	38881105	.	G	A	.	PASS	NT=ref;QSS=30;QSS_NT=30;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	89:29:0:0:0,5:0,0:60,155:0,0	270:68:0:0:13,25:0,1:189,423:0,1
10	38949786	.	T	A	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=TT->AT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER|||||SLC9B1P3|unprocessed_pseudogene|NON_CODING|ENST00000452667|4|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	45:0:0:0:0,1:0,0:1,1:44,45	105:0:0:0:7,12:0,0:0,0:98,101
10	38983658	.	G	T	.	PASS	NT=ref;QSS=28;QSS_NT=28;SGT=GG->GT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||SLC9B1P3|unprocessed_pseudogene|NON_CODING|ENST00000452667||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	69:1:0:0:0,0:0,0:68,76:0,1	155:2:0:0:0,0:0,0:143,155:10,14
10	38998883	rs200748813	A	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=38998883;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	47:0:0:0:47,47:0,0:0,0:0,0	119:0:0:0:109,109:0,0:0,0:10,10
10	38998915	rs201546350	G	T	.	PASS	NT=ref;QSS=24;QSS_NT=24;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=38998915;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	53:0:0:0:0,0:0,0:53,53:0,0	116:0:0:0:0,0:0,0:105,105:11,11
10	38998918	rs199547211	T	G	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=38998918;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	53:0:0:0:0,0:0,0:0,0:53,53	118:0:0:0:0,0:0,0:10,10:108,108
10	39016613	.	T	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=TT->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=DOWNSTREAM(MODIFIER|||||CHEK2P5|unprocessed_pseudogene|NON_CODING|ENST00000423877||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	47:0:0:0:0,0:0,2:0,0:47,47	116:1:0:0:0,0:9,10:0,0:106,107
10	39042553	.	C	T	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	43:1:0:0:0,0:42,47:0,0:0,0	116:0:0:0:0,0:103,112:0,0:13,17
10	39043738	.	T	C	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=TT->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	47:0:0:0:0,0:0,0:0,0:47,49	125:0:0:0:0,0:9,9:0,0:116,136
10	39054613	rs113141050	T	C	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||RP11-453N3.1|processed_pseudogene|NON_CODING|ENST00000423458||1),INTERGENIC(MODIFIER||||||||||1);RSPOS=39054613;dbSNPBuildID=132;SSR=0;SAO=0;VP=050100000001000102000100;WGT=1;VC=SNV;SLO;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	47:0:0:0:0,0:0,0:0,0:47,47	116:0:0:0:0,0:7,7:0,0:109,109
10	39060787	rs61840316	G	A	.	PASS	NT=ref;QSS=23;QSS_NT=23;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=39060787;dbSNPBuildID=129;SSR=0;SAO=0;VP=050000000001000002000100;WGT=1;VC=SNV;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	51:6:0:0:0,0:0,0:45,79:0,0	170:18:0:0:8,14:0,1:144,237:0,0
10	39077234	.	C	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||RP11-96F8.1|processed_pseudogene|NON_CODING|ENST00000427864||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	66:19:0:0:0,1:47,162:0,0:0,11	223:76:0:0:0,5:141,514:0,0:6,27
10	39085103	.	G	C	.	PASS	NT=ref;QSS=23;QSS_NT=23;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	59:14:0:0:0,2:0,4:45,156:0,2	177:28:0:0:1,3:9,24:139,434:0,15
10	39119269	.	T	A	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=TT->AT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	60:11:0:0:0,6:0,1:1,3:48,152	183:37:0:0:8,49:0,1:2,2:136,429
10	42366075	rs201563372	T	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->AT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=42366075;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	53:5:143:0:0,4:0,2:0,1:48,78	133:13:287:0:6,24:0,1:0,1:114,188
10	42404956	.	T	G	.	PASS	NT=ref;QSS=23;QSS_NT=23;SGT=TT->GT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	79:11:0:0:0,0:0,0:0,8:68,154	256:54:0:0:0,0:0,1:7,26:195,403
10	42598958	.	G	C	.	PASS	NT=ref;QSS=23;QSS_NT=23;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	100:14:0:0:0,0:1,1:85,199:0,1	276:43:0:0:1,5:10,15:222,478:0,5
10	42603113	.	C	T	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:1:0:0:0,0:38,46:0,0:0,0	125:0:0:0:0,0:114,151:0,0:11,12
10	42609609	rs112258427	G	A	.	PASS	NT=ref;QSS=23;QSS_NT=23;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=42609609;dbSNPBuildID=132;SSR=0;SAO=0;VP=050100000009000102000100;WGT=1;VC=SNV;SLO;CFL;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	53:1:0:0:0,0:0,0:52,68:0,0	187:3:0:0:7,10:1,1:176,212:0,0
10	42611976	rs201710048	C	G	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=42611976;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:0:0:0:0,0:33,39:0,0:0,0	125:2:0:0:0,1:115,126:8,18:0,0
10	42611990	rs199691217	T	G	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=42611990;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:0:0:0:0,0:0,0:0,0:37,43	124:1:0:0:0,0:1,1:8,12:114,131
10	42611994	.	G	A	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:0:0:0:0,0:0,0:35,41:0,0	118:1:0:0:8,11:0,0:109,127:0,0
10	42614103	.	A	G	.	PASS	NT=ref;QSS=23;QSS_NT=23;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	98:1:0:0:96,118:0,0:1,1:0,0	283:4:0:0:270,358:0,0:9,11:0,1
10	42616670	rs200284129	T	A	.	PASS	NT=ref;QSS=33;QSS_NT=33;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=42616670;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	69:1:0:0:0,2:0,0:0,0:68,96	209:6:0:0:8,13:0,0:0,0:195,321
10	42616684	.	A	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=AA->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	71:3:0:0:68,92:0,0:0,8:0,0	198:3:0:0:176,257:0,0:19,66:0,0
10	42616711	.	C	T	.	PASS	NT=ref;QSS=26;QSS_NT=26;SGT=CC->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	57:1:0:0:1,1:54,80:1,2:0,2	190:1:0:0:3,6:175,284:3,6:8,13
10	42616726	.	C	G	.	PASS	NT=ref;QSS=23;QSS_NT=23;SGT=CC->CG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	52:2:0:0:0,0:49,74:0,2:1,3	177:1:0:0:0,0:162,268:14,21:0,2
10	42617500	.	C	T	.	PASS	NT=ref;QSS=24;QSS_NT=24;SGT=CC->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	59:5:1:0:0,0:54,99:0,0:0,0	165:18:4:0:0,1:141,226:0,0:6,10
10	42617536	.	C	G	.	PASS	NT=ref;QSS=24;QSS_NT=24;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	66:3:1:0:0,1:63,106:0,0:0,2	176:6:0:0:0,0:160,232:7,12:3,8
10	42618688	.	T	C	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	83:0:0:0:0,0:0,0:0,0:83,101	222:0:0:0:0,0:18,21:0,0:204,247
10	42623492	rs200470253	A	T	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=AA->AT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=42623492;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	54:1:0:0:53,67:0,0:0,0:0,2	174:1:0:0:163,217:1,1:0,0:9,15
10	42631371	.	G	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->GT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	53:2:0:0:0,0:0,0:51,67:0,0	158:2:0:0:0,0:0,0:149,201:7,8
10	42631605	.	T	C	.	PASS	NT=ref;QSS=32;QSS_NT=32;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	68:3:0:0:0,0:0,0:0,0:65,87	222:13:0:0:0,0:12,17:0,0:197,273
10	42640365	.	A	T	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=AA->AT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=DOWNSTREAM(MODIFIER|||||AL031601.3|processed_pseudogene|NON_CODING|ENST00000446298||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	89:4:0:0:84,112:0,0:1,2:0,1	210:2:0:0:194,256:0,2:0,0:14,23
10	42642436	.	A	G	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=AA->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=DOWNSTREAM(MODIFIER|||||AL031601.3|processed_pseudogene|NON_CODING|ENST00000446298||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	117:1:0:0:115,150:0,0:1,3:0,0	358:10:0:0:335,416:0,0:13,21:0,0
10	42649019	.	C	T	.	PASS	NT=ref;QSS=28;QSS_NT=28;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||AL031601.3|processed_pseudogene|NON_CODING|ENST00000446298||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	105:4:0:0:0,0:100,147:0,0:1,1	342:17:0:0:0,1:310,440:0,0:15,21
10	42650020	rs191066567	C	G	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=42650020;dbSNPBuildID=135;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	54:1:0:0:0,0:53,77:0,1:0,0	184:3:0:0:1,1:174,208:6,10:0,0
10	42654887	.	A	T	.	PASS	NT=ref;QSS=24;QSS_NT=24;SGT=AA->AT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	88:1:0:0:87,98:0,0:0,0:0,4	241:0:0:0:231,296:0,0:0,1:10,19
10	42658703	.	G	A	.	PASS	NT=ref;QSS=38;QSS_NT=38;SGT=GG->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	90:0:0:0:0,1:0,0:90,102:0,0	259:1:0:0:14,21:0,1:243,281:1,1
10	42658725	.	C	G	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=CC->CG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	92:0:0:0:0,0:91,108:1,2:0,0	275:0:0:0:0,0:256,304:18,25:1,1
10	42659818	rs79042062	C	T	.	PASS	NT=ref;QSS=25;QSS_NT=25;SGT=CC->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=42659818;dbSNPBuildID=131;SSR=0;SAO=0;VP=050000000001040102000100;WGT=1;VC=SNV;VLD;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	64:1:0:0:0,0:63,81:0,0:0,2	167:0:0:0:1,1:157,184:1,1:8,9
10	42699112	.	C	T	.	PASS	NT=ref;QSS=40;QSS_NT=40;SGT=CC->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	102:3:0:0:0,0:99,110:0,0:0,0	270:7:0:0:0,1:254,300:1,2:8,9
10	42707068	rs61853428	A	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=42707068;dbSNPBuildID=129;SSR=0;SAO=0;VP=050000000001000002000100;WGT=1;VC=SNV;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:0:0:0:31,37:0,0:0,0:0,1	98:0:0:0:85,104:0,0:0,0:13,14
10	42752516	.	T	C	.	PASS	NT=ref;QSS=23;QSS_NT=23;SGT=TT->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	53:0:0:0:0,0:0,2:0,0:53,62	121:1:0:0:0,0:9,16:0,0:111,131
10	42766569	rs11599910	G	A	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=GG->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=42766569;dbSNPBuildID=120;SSR=0;SAO=0;VP=050000000001040002000100;WGT=1;VC=SNV;VLD;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	64:0:0:0:0,3:0,0:64,86:0,0	211:0:0:0:9,13:0,0:202,250:0,0
10	42806816	.	G	T	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	43:3:0:0:0,0:0,0:40,71:0,1	151:15:6:0:0,2:1,1:122,217:13,18
10	42850001	.	G	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:1:0:0:0,0:0,0:39,44:0,0	75:0:0:0:6,6:0,0:69,77:0,0
10	42928314	.	C	G	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||361|CCNYL2|protein_coding|CODING|ENST00000426433|4|1),INTRON(MODIFIER|||||CCNYL2|processed_transcript|CODING|ENST00000472090|3|1),INTRON(MODIFIER|||||CCNYL2|processed_transcript|CODING|ENST00000475714|5|1),INTRON(MODIFIER|||||CCNYL2|processed_transcript|CODING|ENST00000483242|4|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:0:0:0:0,0:40,40:0,0:0,0	124:2:0:0:0,0:108,110:14,14:0,0
10	42928318	.	T	A	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=TT->AT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER||||361|CCNYL2|protein_coding|CODING|ENST00000426433|4|1),INTRON(MODIFIER|||||CCNYL2|processed_transcript|CODING|ENST00000472090|3|1),INTRON(MODIFIER|||||CCNYL2|processed_transcript|CODING|ENST00000475714|5|1),INTRON(MODIFIER|||||CCNYL2|processed_transcript|CODING|ENST00000483242|4|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	42:0:0:0:0,0:0,0:0,0:42,42	125:3:0:0:15,16:0,0:1,1:106,108
10	43026305	.	G	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||ZNF37BP|processed_transcript|NON_CODING|ENST00000435805|3|1),INTRON(MODIFIER|||||ZNF37BP|processed_transcript|NON_CODING|ENST00000452075|5|1),INTRON(MODIFIER|||||ZNF37BP|processed_transcript|NON_CODING|ENST00000473592|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	28:1:0:0:0,0:0,0:27,31:0,0	56:0:0:0:0,0:0,0:49,56:7,7
10	45877434	.	C	T	.	PASS	NT=ref;QSS=23;QSS_NT=23;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||617|ALOX5|protein_coding|CODING|ENST00000542434|1|1),INTRON(MODIFIER||||674|ALOX5|protein_coding|CODING|ENST00000374391|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	46:0:0:0:0,0:46,46:0,0:0,0	121:0:0:0:0,0:111,111:0,0:10,10
10	47740005	.	G	A	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||C10orf43|processed_transcript|NON_CODING|ENST00000445847||1),UPSTREAM(MODIFIER|||||FAM25HP|unprocessed_pseudogene|NON_CODING|ENST00000399377||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	42:0:0:0:0,0:0,0:42,42:0,0	97:0:0:0:12,13:0,0:84,85:1,1
10	48411535	.	T	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=DOWNSTREAM(MODIFIER||||429|GDF2|protein_coding|CODING|ENST00000249598||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	44:2:0:0:0,0:0,1:0,0:42,44	110:8:0:0:0,0:7,11:0,0:95,99
10	50363708	.	T	A	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||115|C10orf128|protein_coding|CODING|ENST00000453436||1),DOWNSTREAM(MODIFIER||||159|C10orf128|protein_coding|CODING|ENST00000374148||1),DOWNSTREAM(MODIFIER||||172|C10orf128|protein_coding|CODING|ENST00000374151||1),DOWNSTREAM(MODIFIER|||||RP11-507P23.3|antisense|NON_CODING|ENST00000440054||1),DOWNSTREAM(MODIFIER|||||RP11-507P23.3|antisense|NON_CODING|ENST00000442525||1),DOWNSTREAM(MODIFIER|||||RP11-507P23.3|antisense|NON_CODING|ENST00000443389||1),EXON(MODIFIER|||||C10orf128|processed_transcript|CODING|ENST00000488276|3|1),UTR_3_PRIME(MODIFIER||||105|C10orf128|protein_coding|CODING|ENST00000474718|6|1),UTR_3_PRIME(MODIFIER||||129|C10orf128|protein_coding|CODING|ENST00000374153|7|1),UTR_3_PRIME(MODIFIER|||||C10orf128|nonsense_mediated_decay|CODING|ENST00000374156|6|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:0:0:0:0,0:0,0:0,0:38,38	105:2:0:0:5,5:0,1:0,0:98,99
10	50949944	.	T	C	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||OGDHL|processed_transcript|CODING|ENST00000496884||1),INTRON(MODIFIER||||1010|OGDHL|protein_coding|CODING|ENST00000374103|15|1),INTRON(MODIFIER||||801|OGDHL|protein_coding|CODING|ENST00000432695|13|1),INTRON(MODIFIER||||953|OGDHL|protein_coding|CODING|ENST00000419399|14|1),UPSTREAM(MODIFIER|||||OGDHL|processed_transcript|CODING|ENST00000490844||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:2:0:0:0,1:0,0:0,0:37,41	141:9:1:0:1,3:11,15:0,0:120,130
10	51800500	rs201668932	G	A	.	PASS	NT=ref;QSS=24;QSS_NT=24;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-324H6.5|processed_transcript|NON_CODING|ENST00000456967|6|1);RSPOS=51800500;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000080005000002000100;WGT=1;VC=SNV;INT;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	48:0:0:0:0,0:0,0:48,48:0,0	133:4:0:0:13,16:0,0:116,121:0,0
10	51800592	rs200111966	G	T	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-324H6.5|processed_transcript|NON_CODING|ENST00000456967|6|1);RSPOS=51800592;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000080005000002000100;WGT=1;VC=SNV;INT;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:0:0:0:0,0:0,0:40,40:0,0	121:2:0:0:0,0:0,0:106,108:13,16
10	53214014	.	T	G	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||181|PRKG1|protein_coding|CODING|ENST00000373976|1|1),INTRON(MODIFIER||||659|PRKG1|protein_coding|CODING|ENST00000373985|2|1),INTRON(MODIFIER||||671|PRKG1|protein_coding|CODING|ENST00000401604|2|1),INTRON(MODIFIER||||686|PRKG1|protein_coding|CODING|ENST00000373980|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:1:0:0:0,0:0,0:0,0:32,33	108:0:0:0:0,0:0,0:5,5:103,104
10	53728292	.	T	G	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||181|PRKG1|protein_coding|CODING|ENST00000373976|4|1),INTRON(MODIFIER||||659|PRKG1|protein_coding|CODING|ENST00000373985|5|1),INTRON(MODIFIER||||671|PRKG1|protein_coding|CODING|ENST00000401604|5|1),INTRON(MODIFIER||||686|PRKG1|protein_coding|CODING|ENST00000373980|5|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:0:0:0:0,0:0,0:0,0:34,35	92:0:0:0:0,0:0,0:11,11:81,82
10	53854439	.	T	A	.	PASS	NT=ref;QSS=26;QSS_NT=26;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||283|PRKG1|protein_coding|CODING|ENST00000373975|4|1),INTRON(MODIFIER||||659|PRKG1|protein_coding|CODING|ENST00000373985|7|1),INTRON(MODIFIER||||671|PRKG1|protein_coding|CODING|ENST00000401604|7|1),INTRON(MODIFIER||||686|PRKG1|protein_coding|CODING|ENST00000373980|7|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	42:0:0:0:0,0:0,0:0,0:42,42	109:0:0:0:17,17:0,0:0,0:92,92
10	54243553	.	G	A	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:1:0:0:0,0:0,0:32,33:0,0	109:0:0:0:15,15:0,0:94,94:0,0
10	54699986	.	T	A	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	44:0:0:0:0,0:0,0:0,0:44,44	98:0:0:0:5,5:0,0:0,0:93,94
10	55343511	.	T	G	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:0:0:0:0,0:0,0:0,0:39,39	105:0:0:0:0,0:0,0:9,9:96,96
10	56563944	.	C	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||809|PCDH15|protein_coding|CODING|ENST00000373957|4|1),INTRON(MODIFIER||||91|PCDH15|protein_coding|CODING|ENST00000458638|3|1),UPSTREAM(MODIFIER||||1150|PCDH15|protein_coding|CODING|ENST00000409834||1),UPSTREAM(MODIFIER||||1539|PCDH15|protein_coding|CODING|ENST00000395438||1),UPSTREAM(MODIFIER||||1681|PCDH15|protein_coding|CODING|ENST00000414778||1),UPSTREAM(MODIFIER||||1684|PCDH15|protein_coding|CODING|ENST00000373965||1),UPSTREAM(MODIFIER||||1785|PCDH15|protein_coding|CODING|ENST00000395445||1),UPSTREAM(MODIFIER||||1886|PCDH15|protein_coding|CODING|ENST00000437009||1),UPSTREAM(MODIFIER||||1915|PCDH15|protein_coding|CODING|ENST00000395432||1),UPSTREAM(MODIFIER||||1932|PCDH15|protein_coding|CODING|ENST00000395433||1),UPSTREAM(MODIFIER||||1952|PCDH15|protein_coding|CODING|ENST00000395430||1),UPSTREAM(MODIFIER||||1955|PCDH15|protein_coding|CODING|ENST00000320301||1),UPSTREAM(MODIFIER||||1957|PCDH15|protein_coding|CODING|ENST00000361849||1),UPSTREAM(MODIFIER||||650|PCDH15|protein_coding|CODING|ENST00000395442||1),UPSTREAM(MODIFIER||||719|PCDH15|protein_coding|CODING|ENST00000395440||1),UPSTREAM(MODIFIER||||961|PCDH15|protein_coding|CODING|ENST00000373955||1),UPSTREAM(MODIFIER||||981|PCDH15|protein_coding|CODING|ENST00000395446||1),UPSTREAM(MODIFIER|||||PCDH15|nonsense_mediated_decay|CODING|ENST00000373956||1),UPSTREAM(MODIFIER|||||PCDH15|nonsense_mediated_decay|CODING|ENST00000414367||1),UPSTREAM(MODIFIER|||||PCDH15|nonsense_mediated_decay|CODING|ENST00000448885||1),UPSTREAM(MODIFIER|||||PCDH15|processed_transcript|CODING|ENST00000495484||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:0:0:0:0,0:34,34:0,0:0,0	121:1:0:0:0,0:110,111:0,0:10,10
10	56631874	.	G	T	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||809|PCDH15|protein_coding|CODING|ENST00000373957|4|1),INTRON(MODIFIER||||91|PCDH15|protein_coding|CODING|ENST00000458638|3|1),UPSTREAM(MODIFIER|||||RP11-264A11.1|sense_intronic|NON_CODING|ENST00000414295||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	44:1:0:0:0,1:0,0:43,43:0,0	92:0:0:0:0,0:0,0:87,87:5,5
10	56724774	.	A	G	.	PASS	NT=ref;QSS=25;QSS_NT=25;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||809|PCDH15|protein_coding|CODING|ENST00000373957|3|1),INTRON(MODIFIER||||91|PCDH15|protein_coding|CODING|ENST00000458638|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	50:0:0:0:50,50:0,0:0,0:0,0	95:1:0:0:86,87:0,0:8,8:0,0
10	56972865	.	G	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||809|PCDH15|protein_coding|CODING|ENST00000373957|2|1),INTRON(MODIFIER||||91|PCDH15|protein_coding|CODING|ENST00000458638|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:0:0:0:0,0:0,0:30,30:0,0	88:0:0:0:0,0:0,0:80,80:8,9
10	57039006	.	T	C	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||809|PCDH15|protein_coding|CODING|ENST00000373957|2|1),INTRON(MODIFIER||||91|PCDH15|protein_coding|CODING|ENST00000458638|1|1),INTRON(MODIFIER|||||RP11-168O22.1|processed_transcript|NON_CODING|ENST00000457975|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	41:0:0:0:0,0:0,0:0,0:41,41	110:1:0:0:0,0:5,5:0,0:104,105
10	57100986	.	C	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||809|PCDH15|protein_coding|CODING|ENST00000373957|2|1),INTRON(MODIFIER|||||RP11-168O22.1|processed_transcript|NON_CODING|ENST00000457975|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	28:0:0:0:0,0:28,28:0,0:0,0	99:0:0:0:0,0:93,93:5,5:1,1
10	57255360	.	G	T	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||809|PCDH15|protein_coding|CODING|ENST00000373957|2|1),INTRON(MODIFIER|||||RP11-168O22.1|processed_transcript|NON_CODING|ENST00000457975|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:0:0:0:0,0:0,0:39,39:0,0	106:0:0:0:0,0:0,0:95,95:11,11
10	57277639	.	T	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||RP11-598C10.1|lincRNA|NON_CODING|ENST00000427182||1),INTRON(MODIFIER||||809|PCDH15|protein_coding|CODING|ENST00000373957|2|1),INTRON(MODIFIER|||||RP11-168O22.1|processed_transcript|NON_CODING|ENST00000457975|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:2:0:0:0,0:0,0:0,0:33,35	96:1:0:0:0,0:5,5:0,0:90,91
10	57366233	.	A	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||809|PCDH15|protein_coding|CODING|ENST00000373957|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:0:0:0:30,31:0,0:0,0:0,0	89:0:0:0:82,93:7,8:0,0:0,0
10	57567282	.	C	A	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:0:0:0:0,0:39,39:0,0:0,0	102:1:0:0:13,13:88,89:0,0:0,0
10	57755767	rs12256283	C	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=57755767;dbSNPBuildID=120;SSR=0;SAO=0;VP=050000000001000002000100;WGT=1;VC=SNV;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	22:2:0:0:0,0:20,22:0,0:0,0	43:2:0:0:0,0:34,37:0,0:7,7
10	58969659	.	T	A	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:0:0:0:0,0:0,0:0,0:31,31	95:1:0:0:13,13:0,0:0,0:81,82
10	59197421	rs149386844	G	A	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=59197421;GMAF=0.0005;dbSNPBuildID=134;SSR=0;SAO=0;VP=050000000005000014000100;WGT=1;VC=SNV;ASP;KGPhase1;KGPROD	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	43:1:0:0:0,0:0,0:42,43:0,0	103:0:0:0:9,9:1,1:93,94:0,0
10	59412564	.	T	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:0:0:0:0,0:0,0:0,0:36,36	126:1:0:0:6,6:0,0:0,0:119,120
10	60520630	.	C	A	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||974|BICC1|protein_coding|CODING|ENST00000373886|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:0:0:0:0,0:39,39:0,0:0,0	126:1:0:0:5,6:119,119:0,0:1,1
10	60585892	.	T	C	.	PASS	NT=ref;QSS=23;QSS_NT=23;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||974|BICC1|protein_coding|CODING|ENST00000373886|20|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	45:0:0:0:0,0:0,0:0,0:45,45	113:1:0:0:0,0:9,9:0,0:103,104
10	60967666	.	A	G	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||49|PHYHIPL|protein_coding|CODING|ENST00000433653||1),INTRON(MODIFIER||||350|PHYHIPL|protein_coding|CODING|ENST00000373878|1|1),INTRON(MODIFIER||||376|PHYHIPL|protein_coding|CODING|ENST00000373880|1|1),INTRON(MODIFIER|||||PHYHIPL|nonsense_mediated_decay|CODING|ENST00000486074|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	43:1:0:0:42,43:0,0:0,0:0,0	92:2:0:0:80,80:0,1:10,10:0,1
10	61002253	.	G	T	.	PASS	NT=ref;QSS=23;QSS_NT=23;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||487|FAM13C|protein_coding|CODING|ENST00000419214||1),DOWNSTREAM(MODIFIER||||501|FAM13C|protein_coding|CODING|ENST00000373867||1),DOWNSTREAM(MODIFIER||||585|FAM13C|protein_coding|CODING|ENST00000373868||1),DOWNSTREAM(MODIFIER||||605|FAM13C|protein_coding|CODING|ENST00000277705||1),DOWNSTREAM(MODIFIER||||606|FAM13C|protein_coding|CODING|ENST00000442566||1),DOWNSTREAM(MODIFIER|||||FAM13C|nonsense_mediated_decay|CODING|ENST00000513059||1),DOWNSTREAM(MODIFIER|||||PHYHIPL|processed_transcript|CODING|ENST00000472199||1),INTRON(MODIFIER||||350|PHYHIPL|protein_coding|CODING|ENST00000373878|4|1),INTRON(MODIFIER||||376|PHYHIPL|protein_coding|CODING|ENST00000373880|4|1),INTRON(MODIFIER|||||PHYHIPL|nonsense_mediated_decay|CODING|ENST00000486074|5|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	46:0:0:0:0,0:0,0:46,46:0,0	98:2:0:0:0,0:0,0:88,89:8,9
10	61183856	.	C	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:0:0:0:0,0:31,33:0,0:0,0	86:1:0:0:6,7:78,88:1,1:0,0
10	61183857	.	A	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:0:0:0:31,33:0,0:0,0:0,0	87:2:0:0:78,88:0,1:0,0:7,8
10	62817888	.	T	C	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:0:0:0:0,0:0,0:0,0:36,36	88:0:0:0:0,0:6,6:0,0:82,83
10	63956887	rs76307079	C	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||308|RTKN2|protein_coding|CODING|ENST00000315289|8|1),INTRON(MODIFIER||||527|RTKN2|protein_coding|CODING|ENST00000395265|13|1),UTR_3_PRIME(MODIFIER||||609|RTKN2|protein_coding|CODING|ENST00000373789|12|1);RSPOS=63956887;GMAF=0.0009;dbSNPBuildID=134;SSR=0;SAO=0;VP=050000800201000014000100;GENEINFO=RTKN2:219790;WGT=1;VC=SNV;REF;U3;KGPhase1;KGPROD	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:0:0:0:0,0:31,31:0,0:0,0	95:1:0:0:0,0:87,88:0,0:7,7
10	64039517	rs79987490	C	T	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=64039517;GMAF=0.0485;dbSNPBuildID=132;SSR=0;SAO=0;VP=050000000001010516000100;WGT=1;VC=SNV;G5;HD;GNO;KGPhase1;KGPROD;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:0:0:0:0,0:36,36:0,0:0,0	101:0:0:0:0,0:96,96:0,0:5,5
10	64047270	.	G	A	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||RP11-120C12.3|lincRNA|NON_CODING|ENST00000442753||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:0:0:0:0,0:0,0:36,36:0,0	112:0:0:0:7,7:0,0:105,106:0,0
10	64775265	.	C	T	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=CC->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	44:0:0:0:0,0:44,45:0,0:0,0	126:2:0:0:0,0:119,126:0,0:5,5
10	64775266	.	A	G	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	44:0:0:0:44,45:0,0:0,0:0,0	123:1:0:0:116,121:0,0:6,7:0,0
10	65708372	.	T	A	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-170M17.1|lincRNA|NON_CODING|ENST00000444770|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:0:0:0:0,0:0,0:0,0:39,39	100:1:0:0:7,7:0,0:0,0:92,93
10	65912932	.	T	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:1:0:0:0,0:0,0:0,0:32,33	102:2:0:0:0,0:6,6:0,0:94,96
10	66075702	rs114143022	C	A	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=66075702;GMAF=0.1076;dbSNPBuildID=132;SSR=0;SAO=0;VP=050000000005070014000100;WGT=1;VC=SNV;ASP;VLD;G5A;G5;KGPhase1;KGPROD	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:1:0:0:0,0:35,39:0,0:0,0	87:2:0:0:8,9:77,78:0,0:0,0
10	66154879	.	T	C	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:1:0:0:0,0:0,0:0,1:39,39	98:1:0:0:0,0:6,6:0,0:91,92
10	66202591	.	G	T	.	PASS	NT=ref;QSS=27;QSS_NT=27;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	53:0:0:0:0,0:0,0:53,53:0,0	124:0:0:0:0,0:0,0:118,118:6,7
10	66548947	.	A	G	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:0:0:0:30,30:0,0:0,0:0,0	113:1:0:0:98,100:0,0:14,14:0,0
10	66945078	.	G	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	27:0:0:0:0,0:0,0:27,27:0,0	98:1:0:0:0,0:0,0:91,92:6,6
10	68241397	.	T	C	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||895|CTNNA3|protein_coding|CODING|ENST00000373744|10|1),INTRON(MODIFIER||||895|CTNNA3|protein_coding|CODING|ENST00000433211|11|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:0:0:0:0,0:0,0:0,0:33,34	80:1:0:0:0,0:8,8:0,0:71,75
10	70445904	.	G	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||2136|TET1|protein_coding|CODING|ENST00000373644|10|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:0:0:0:0,0:0,0:32,33:0,0	92:0:0:0:6,6:0,0:86,86:0,0
10	70768147	rs200355874	A	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||621|KIAA1279|protein_coding|CODING|ENST00000361983|4|1),INTRON(MODIFIER|||||KIAA1279|processed_transcript|CODING|ENST00000481912|1|1);RSPOS=70768147;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000080005000002000100;WGT=1;VC=SNV;INT;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	14:1:0:0:13,14:0,0:0,0:0,0	47:3:0:0:35,38:0,0:0,0:9,9
10	70918852	.	C	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||RP11-259F16.3|processed_pseudogene|NON_CODING|ENST00000438591||1),DOWNSTREAM(MODIFIER|||||VPS26A|processed_transcript|CODING|ENST00000497564||1),INTRON(MODIFIER||||216|VPS26A|protein_coding|CODING|ENST00000541711|4|1),INTRON(MODIFIER||||251|VPS26A|protein_coding|CODING|ENST00000395098|5|1),INTRON(MODIFIER||||310|VPS26A|protein_coding|CODING|ENST00000546041|6|1),INTRON(MODIFIER||||327|VPS26A|protein_coding|CODING|ENST00000263559|5|1),INTRON(MODIFIER||||327|VPS26A|protein_coding|CODING|ENST00000373382|6|1),INTRON(MODIFIER|||||VPS26A|processed_transcript|CODING|ENST00000467852|3|1),INTRON(MODIFIER|||||VPS26A|processed_transcript|CODING|ENST00000477667|5|1),INTRON(MODIFIER|||||VPS26A|processed_transcript|CODING|ENST00000489656|4|1),INTRON(MODIFIER|||||VPS26A|processed_transcript|CODING|ENST00000489794|4|1),INTRON(MODIFIER|||||VPS26A|processed_transcript|CODING|ENST00000490696|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:0:0:0:1,1:32,32:0,0:0,0	91:0:0:0:0,0:85,86:0,0:6,6
10	71169676	.	T	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||398|TACR2|protein_coding|CODING|ENST00000373306|2|1),UPSTREAM(MODIFIER||||186|TACR2|protein_coding|CODING|ENST00000373307||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	24:1:0:0:0,0:0,0:0,0:23,24	46:0:0:0:0,0:7,7:0,0:39,42
10	74074620	.	T	A	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:0:0:0:0,0:0,0:0,0:39,39	97:6:0:0:7,7:0,1:1,3:83,85
10	74131562	.	T	C	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||MICU1|processed_transcript|CODING|ENST00000489666||1),INTRON(MODIFIER||||278|MICU1|protein_coding|CODING|ENST00000398763|8|1),INTRON(MODIFIER||||278|MICU1|protein_coding|CODING|ENST00000418483|6|1),INTRON(MODIFIER||||476|MICU1|protein_coding|CODING|ENST00000361114|11|1),INTRON(MODIFIER||||476|MICU1|protein_coding|CODING|ENST00000401998|12|1),INTRON(MODIFIER||||478|MICU1|protein_coding|CODING|ENST00000398761|13|1),INTRON(MODIFIER|||||MICU1|nonsense_mediated_decay|CODING|ENST00000476605|12|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:2:0:0:1,1:0,0:0,0:34,36	88:1:0:0:0,0:6,6:0,0:81,84
10	75744481	.	T	C	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	41:0:0:0:0,0:0,0:0,0:41,41	100:3:0:0:0,0:8,8:1,1:88,92
10	76563300	.	G	T	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	25:0:0:0:0,0:0,0:25,25:0,0	62:4:0:0:0,0:0,0:46,48:12,14
10	79212403	.	C	T	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1167|KCNMA1|protein_coding|CODING|ENST00000372408|1|1),INTRON(MODIFIER||||1171|KCNMA1|protein_coding|CODING|ENST00000372437|1|1),INTRON(MODIFIER||||1177|KCNMA1|protein_coding|CODING|ENST00000372440|1|1),INTRON(MODIFIER||||1178|KCNMA1|protein_coding|CODING|ENST00000286627|1|1),INTRON(MODIFIER||||1205|KCNMA1|protein_coding|CODING|ENST00000372443|1|1),INTRON(MODIFIER||||1209|KCNMA1|protein_coding|CODING|ENST00000457953|1|1),INTRON(MODIFIER||||1210|KCNMA1|protein_coding|CODING|ENST00000286628|1|1),INTRON(MODIFIER||||1219|KCNMA1|protein_coding|CODING|ENST00000404857|1|1),INTRON(MODIFIER||||1225|KCNMA1|protein_coding|CODING|ENST00000404771|1|1),INTRON(MODIFIER||||1239|KCNMA1|protein_coding|CODING|ENST00000354353|1|1),INTRON(MODIFIER||||1240|KCNMA1|protein_coding|CODING|ENST00000406533|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:0:0:0:0,0:38,38:0,0:0,0	90:0:0:0:1,1:79,79:0,0:10,10
10	80226524	.	G	A	.	PASS	NT=ref;QSS=23;QSS_NT=23;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-90J7.3|processed_transcript|NON_CODING|ENST00000429250|1|1),INTRON(MODIFIER|||||RP11-90J7.3|processed_transcript|NON_CODING|ENST00000510550|1|1),INTRON(MODIFIER|||||RP11-90J7.3|processed_transcript|NON_CODING|ENST00000546103|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	46:0:0:0:0,0:0,0:46,47:0,0	108:2:0:0:9,9:0,0:97,99:0,0
10	81556684	.	T	C	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:0:0:0:0,0:0,0:0,0:38,38	102:1:0:0:0,0:6,6:0,0:95,97
10	81621871	rs188747730	C	T	.	PASS	NT=ref;QSS=24;QSS_NT=24;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||RP11-182L21.4|processed_pseudogene|NON_CODING|ENST00000456716||1),INTERGENIC(MODIFIER||||||||||1);RSPOS=81621871;dbSNPBuildID=135;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	49:1:0:0:0,0:48,49:0,0:0,0	115:1:0:0:0,0:106,107:0,0:8,13
10	81996505	.	T	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-40F6.1|unprocessed_pseudogene|NON_CODING|ENST00000423182|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:1:0:0:0,0:1,1:0,0:32,33	54:1:0:0:0,0:8,9:0,0:45,46
10	82448578	.	A	T	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	22:2:4:0:20,23:0,0:0,0:0,0	69:7:7:0:48,53:0,0:1,3:13,15
10	82670435	rs9702154	C	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->AC;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=82670435;dbSNPBuildID=119;SSR=0;SAO=0;VP=050000000001040102000100;WGT=1;VC=SNV;VLD;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:0:0:0:0,1:34,35:0,0:0,0	65:0:0:0:11,11:54,59:0,0:0,0
10	82686952	.	T	A	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:0:0:0:0,0:0,0:0,0:39,39	114:2:0:0:9,10:0,0:0,1:103,103
10	83646605	.	A	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||499|NRG3|protein_coding|CODING|ENST00000372142|1|1),INTRON(MODIFIER||||500|NRG3|protein_coding|CODING|ENST00000404576|1|1),INTRON(MODIFIER||||526|NRG3|protein_coding|CODING|ENST00000556918|1|1),INTRON(MODIFIER||||696|NRG3|protein_coding|CODING|ENST00000372141|1|1),INTRON(MODIFIER||||720|NRG3|protein_coding|CODING|ENST00000404547|1|1),INTRON(MODIFIER|||||NRG3|nonsense_mediated_decay|CODING|ENST00000555784|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	28:0:0:0:28,29:0,0:0,0:0,0	100:2:0:0:88,92:0,0:10,10:0,0
10	83688063	.	C	A	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||499|NRG3|protein_coding|CODING|ENST00000372142|1|1),INTRON(MODIFIER||||500|NRG3|protein_coding|CODING|ENST00000404576|1|1),INTRON(MODIFIER||||526|NRG3|protein_coding|CODING|ENST00000556918|1|1),INTRON(MODIFIER||||696|NRG3|protein_coding|CODING|ENST00000372141|1|1),INTRON(MODIFIER||||720|NRG3|protein_coding|CODING|ENST00000404547|1|1),INTRON(MODIFIER|||||NRG3|nonsense_mediated_decay|CODING|ENST00000555784|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:0:0:0:0,0:37,37:0,0:0,0	110:3:0:0:7,7:100,103:0,0:0,0
10	83784230	.	C	A	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||499|NRG3|protein_coding|CODING|ENST00000372142|1|1),INTRON(MODIFIER||||500|NRG3|protein_coding|CODING|ENST00000404576|1|1),INTRON(MODIFIER||||526|NRG3|protein_coding|CODING|ENST00000556918|1|1),INTRON(MODIFIER||||696|NRG3|protein_coding|CODING|ENST00000372141|1|1),INTRON(MODIFIER||||720|NRG3|protein_coding|CODING|ENST00000404547|1|1),INTRON(MODIFIER|||||NRG3|nonsense_mediated_decay|CODING|ENST00000555784|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:0:0:0:0,0:38,38:0,0:0,0	105:0:0:0:5,5:99,99:1,1:0,0
10	83823849	.	G	C	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||499|NRG3|protein_coding|CODING|ENST00000372142|1|1),INTRON(MODIFIER||||500|NRG3|protein_coding|CODING|ENST00000404576|1|1),INTRON(MODIFIER||||526|NRG3|protein_coding|CODING|ENST00000556918|1|1),INTRON(MODIFIER||||696|NRG3|protein_coding|CODING|ENST00000372141|1|1),INTRON(MODIFIER||||720|NRG3|protein_coding|CODING|ENST00000404547|1|1),INTRON(MODIFIER|||||NRG3|nonsense_mediated_decay|CODING|ENST00000555784|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:0:0:0:0,0:0,0:35,35:0,0	102:0:0:0:0,0:7,7:95,95:0,0
10	83924471	.	C	G	.	PASS	NT=ref;QSS=24;QSS_NT=24;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||499|NRG3|protein_coding|CODING|ENST00000372142|1|1),INTRON(MODIFIER||||500|NRG3|protein_coding|CODING|ENST00000404576|1|1),INTRON(MODIFIER||||526|NRG3|protein_coding|CODING|ENST00000556918|1|1),INTRON(MODIFIER||||696|NRG3|protein_coding|CODING|ENST00000372141|1|1),INTRON(MODIFIER||||720|NRG3|protein_coding|CODING|ENST00000404547|1|1),INTRON(MODIFIER|||||NRG3|nonsense_mediated_decay|CODING|ENST00000555784|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	47:0:0:0:0,0:47,47:0,0:0,0	108:1:0:0:0,0:99,101:8,8:0,0
10	84465362	.	G	T	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||499|NRG3|protein_coding|CODING|ENST00000372142|3|1),INTRON(MODIFIER||||500|NRG3|protein_coding|CODING|ENST00000404576|3|1),INTRON(MODIFIER||||526|NRG3|protein_coding|CODING|ENST00000556918|4|1),INTRON(MODIFIER||||696|NRG3|protein_coding|CODING|ENST00000372141|2|1),INTRON(MODIFIER||||720|NRG3|protein_coding|CODING|ENST00000404547|2|1),INTRON(MODIFIER|||||NRG3|nonsense_mediated_decay|CODING|ENST00000555784|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:0:0:0:0,0:0,0:39,39:0,0	102:0:0:0:0,0:0,0:97,97:5,5
10	85058063	.	A	C	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:0:0:0:37,37:0,0:0,0:0,0	114:1:0:0:100,101:13,13:0,0:0,0
10	86195878	.	G	A	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1047|FAM190B|protein_coding|CODING|ENST00000372088|5|1),INTRON(MODIFIER||||261|FAM190B|protein_coding|CODING|ENST00000543283|2|1),INTRON(MODIFIER||||834|FAM190B|protein_coding|CODING|ENST00000224756|5|1),INTRON(MODIFIER|||||FAM190B|processed_transcript|CODING|ENST00000493409|2|1),INTRON(MODIFIER|||||FAM190B|processed_transcript|CODING|ENST00000494144|3|1),INTRON(MODIFIER|||||FAM190B|processed_transcript|CODING|ENST00000494586|2|1),UPSTREAM(MODIFIER|||||FAM190B|processed_transcript|CODING|ENST00000498300||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:1:0:0:0,0:0,1:37,39:0,0	97:0:0:0:5,5:0,0:92,94:0,0
10	88762170	.	T	C	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||BMS1P3|unprocessed_pseudogene|NON_CODING|ENST00000372011||1),INTRON(MODIFIER|||||AGAP11|processed_transcript|NON_CODING|ENST00000433214|9|1),INTRON(MODIFIER|||||AGAP11|processed_transcript|NON_CODING|ENST00000444180|5|1),INTRON(MODIFIER|||||AGAP11|processed_transcript|NON_CODING|ENST00000444431|4|1),INTRON(MODIFIER|||||RP11-96C23.11|unprocessed_pseudogene|NON_CODING|ENST00000437689|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	44:0:0:0:0,0:0,1:0,0:44,44	114:2:0:0:0,0:8,13:0,0:104,105
10	88762175	.	C	T	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=CC->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=DOWNSTREAM(MODIFIER|||||BMS1P3|unprocessed_pseudogene|NON_CODING|ENST00000372011||1),INTRON(MODIFIER|||||AGAP11|processed_transcript|NON_CODING|ENST00000433214|9|1),INTRON(MODIFIER|||||AGAP11|processed_transcript|NON_CODING|ENST00000444180|5|1),INTRON(MODIFIER|||||AGAP11|processed_transcript|NON_CODING|ENST00000444431|4|1),INTRON(MODIFIER|||||RP11-96C23.11|unprocessed_pseudogene|NON_CODING|ENST00000437689|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	46:0:0:0:0,0:46,46:0,0:0,1	116:0:0:0:0,0:106,106:0,0:10,13
10	88762176	.	A	G	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=AA->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=DOWNSTREAM(MODIFIER|||||BMS1P3|unprocessed_pseudogene|NON_CODING|ENST00000372011||1),INTRON(MODIFIER|||||AGAP11|processed_transcript|NON_CODING|ENST00000433214|9|1),INTRON(MODIFIER|||||AGAP11|processed_transcript|NON_CODING|ENST00000444180|5|1),INTRON(MODIFIER|||||AGAP11|processed_transcript|NON_CODING|ENST00000444431|4|1),INTRON(MODIFIER|||||RP11-96C23.11|unprocessed_pseudogene|NON_CODING|ENST00000437689|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	46:0:0:0:45,45:1,1:0,1:0,0	115:0:0:0:106,106:0,0:9,12:0,0
10	89861486	.	C	G	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:0:0:0:0,0:34,34:0,0:0,0	93:1:0:0:0,1:84,85:8,8:0,0
10	91247353	.	T	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||24|SLC16A12|protein_coding|CODING|ENST00000475682|2|1),INTRON(MODIFIER||||486|SLC16A12|protein_coding|CODING|ENST00000341233|2|1),INTRON(MODIFIER||||516|SLC16A12|protein_coding|CODING|ENST00000371790|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:2:0:0:0,0:0,0:0,0:29,31	96:4:0:0:0,0:7,8:0,0:85,88
10	91313884	rs200831063	G	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||24|SLC16A12|protein_coding|CODING|ENST00000475682|2|1);RSPOS=91313884;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	27:0:0:0:0,0:0,0:27,30:0,0	96:0:0:0:10,11:0,0:86,97:0,0
10	92215926	.	C	G	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-15K3.1|lincRNA|NON_CODING|ENST00000418379|2|1),INTRON(MODIFIER|||||RP11-94M14.2|lincRNA|NON_CODING|ENST00000414903|1|1),INTRON(MODIFIER|||||RP11-94M14.2|lincRNA|NON_CODING|ENST00000422206|1|1),INTRON(MODIFIER|||||RP11-94M14.2|lincRNA|NON_CODING|ENST00000439157|1|1),INTRON(MODIFIER|||||RP11-94M14.2|lincRNA|NON_CODING|ENST00000453889|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:1:0:0:0,0:35,36:0,0:0,0	122:0:0:0:0,0:114,114:7,8:1,1
10	93744984	.	G	T	.	PASS	NT=ref;QSS=23;QSS_NT=23;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||BTAF1|processed_transcript|CODING|ENST00000476401||1),INTRON(MODIFIER||||1849|BTAF1|protein_coding|CODING|ENST00000265990|19|1),INTRON(MODIFIER|||||BTAF1|processed_transcript|CODING|ENST00000471217|13|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	46:0:0:0:0,0:0,0:46,46:0,0	101:3:0:0:0,0:0,0:93,96:5,6
10	94005790	.	A	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||684|CPEB3|protein_coding|CODING|ENST00000394210|1|1),INTRON(MODIFIER||||698|CPEB3|protein_coding|CODING|ENST00000265997|1|1),UPSTREAM(MODIFIER||||684|CPEB3|protein_coding|CODING|ENST00000412050||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	46:2:0:0:43,45:0,0:1,1:0,0	90:5:0:0:74,81:0,0:11,13:0,0
10	94339892	.	A	G	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:1:0:0:32,34:0,0:0,0:0,0	81:3:0:0:72,75:0,0:6,6:0,0
10	95795620	.	G	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||2302|PLCE1|protein_coding|CODING|ENST00000260766|2|1),INTRON(MODIFIER||||2312|PLCE1|protein_coding|CODING|ENST00000371380|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:0:0:0:0,0:0,0:32,32:0,0	91:0:0:0:0,0:0,0:87,87:4,4
10	98541862	.	G	A	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	42:3:0:0:0,0:0,0:39,43:0,0	90:9:0:0:8,10:0,0:73,80:0,0
10	99405691	.	C	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||449|PI4K2A|protein_coding|CODING|ENST00000555577|2|1),INTRON(MODIFIER||||449|RP11-548K23.11|protein_coding|CODING|ENST00000370649|2|1),INTRON(MODIFIER||||479|PI4K2A|protein_coding|CODING|ENST00000370631|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	26:0:0:0:0,0:26,26:0,0:0,0	97:1:0:0:14,14:82,83:0,0:0,0
10	99454598	.	G	A	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:0:0:0:0,0:0,0:36,36:0,0	108:0:0:0:13,13:0,0:95,95:0,0
10	100303120	.	G	A	.	PASS	NT=ref;QSS=23;QSS_NT=23;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||480|HPSE2|protein_coding|CODING|ENST00000404542|7|1),INTRON(MODIFIER||||534|HPSE2|protein_coding|CODING|ENST00000370549|8|1),INTRON(MODIFIER||||548|HPSE2|protein_coding|CODING|ENST00000370546|9|1),INTRON(MODIFIER||||592|HPSE2|protein_coding|CODING|ENST00000370552|9|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	47:0:0:0:0,0:0,0:46,46:1,1	106:3:0:0:10,11:0,0:93,95:0,0
10	101447031	.	T	C	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||604|ENTPD7|protein_coding|CODING|ENST00000370489|6|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	18:1:0:0:0,0:0,0:0,0:17,19	38:0:1:0:0,0:8,8:0,0:30,30
10	101682282	rs199664602	C	T	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1577|DNMBP|protein_coding|CODING|ENST00000324109|4|1),INTRON(MODIFIER||||1601|DNMBP|protein_coding|CODING|ENST00000342239|4|1),INTRON(MODIFIER||||823|DNMBP|protein_coding|CODING|ENST00000543621|1|1),UPSTREAM(MODIFIER|||||DNMBP-AS1|antisense|NON_CODING|ENST00000427093||1),UPSTREAM(MODIFIER|||||DNMBP-AS1|antisense|NON_CODING|ENST00000434409||1);RSPOS=101682282;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000080015000002000100;WGT=1;VC=SNV;INT;OTH;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	27:0:0:0:0,0:26,26:0,0:1,1	60:1:0:0:0,0:42,43:2,2:15,16
10	102037575	.	G	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||117|BLOC1S2|protein_coding|CODING|ENST00000579542||1),DOWNSTREAM(MODIFIER|||||BLOC1S2|processed_transcript|CODING|ENST00000361832||1),INTRON(MODIFIER||||142|BLOC1S2|protein_coding|CODING|ENST00000370372|4|1),INTRON(MODIFIER||||99|BLOC1S2|protein_coding|CODING|ENST00000441611|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:7:0:0:0,1:0,0:24,38:0,0	73:8:0:0:10,12:0,0:55,79:0,0
10	103735670	.	A	G	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||689|C10orf76|protein_coding|CODING|ENST00000370033|19|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:0:0:0:35,44:0,1:0,0:0,0	84:2:0:0:77,97:0,0:5,6:0,0
10	103914320	.	G	T	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||1400|PPRC1|protein_coding|CODING|ENST00000413464||1),DOWNSTREAM(MODIFIER||||1664|PPRC1|protein_coding|CODING|ENST00000278070||1),DOWNSTREAM(MODIFIER||||631|PPRC1|protein_coding|CODING|ENST00000370012||1),INTRON(MODIFIER||||699|NOLC1|protein_coding|CODING|ENST00000370007|1|1),INTRON(MODIFIER||||709|NOLC1|protein_coding|CODING|ENST00000405356|1|1),INTRON(MODIFIER|||||NOLC1|processed_transcript|CODING|ENST00000461421|1|1),INTRON(MODIFIER|||||NOLC1|processed_transcript|CODING|ENST00000464969|1|1),INTRON(MODIFIER|||||NOLC1|processed_transcript|CODING|ENST00000476468|1|1),INTRON(MODIFIER|||||NOLC1|processed_transcript|CODING|ENST00000488254|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	44:1:0:0:0,0:0,0:43,44:0,0	109:2:0:0:0,0:0,1:98,100:9,9
10	104483039	.	C	T	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||322|SFXN2|protein_coding|CODING|ENST00000369893|1|1),INTRON(MODIFIER|||||SFXN2|processed_transcript|CODING|ENST00000459894|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:0:0:0:0,0:38,39:0,0:0,0	94:4:0:0:1,1:82,86:1,1:6,7
10	106986120	.	G	A	.	PASS	NT=ref;QSS=23;QSS_NT=23;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1222|SORCS3|protein_coding|CODING|ENST00000369701|20|1),INTRON(MODIFIER||||197|SORCS3|protein_coding|CODING|ENST00000369699|8|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	45:0:0:0:0,0:0,0:45,45:0,0	102:1:0:0:7,7:0,0:94,95:0,0
10	108139253	.	C	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	27:0:0:0:0,0:27,27:0,0:0,0	103:0:0:0:0,0:94,94:8,8:1,1
10	109360738	.	T	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->GT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:2:0:0:1,1:0,0:0,1:33,49	97:3:0:0:0,0:0,0:6,9:88,125
10	109368562	.	A	C	.	PASS	NT=ref;QSS=25;QSS_NT=25;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	52:2:0:0:49,52:0,0:1,1:0,0	94:3:0:0:83,86:8,8:0,0:0,0
10	109837807	.	T	G	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:0:0:0:0,0:0,0:0,0:31,31	95:1:0:0:0,0:0,0:8,9:86,87
10	109978488	.	C	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:1:0:0:0,0:30,31:0,0:0,0	109:1:0:0:0,0:99,100:0,0:9,9
10	110698151	.	A	G	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||7SK|misc_RNA|NON_CODING|ENST00000410504||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:0:0:0:35,35:0,0:0,0:0,0	123:1:0:0:115,115:0,0:7,8:0,0
10	112327054	.	T	C	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER||||1217|SMC3|protein_coding|CODING|ENST00000361804||1),UPSTREAM(MODIFIER|||||SMC3|processed_transcript|CODING|ENST00000462899||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	42:0:0:0:0,0:0,0:0,0:42,42	111:0:0:0:0,0:11,11:0,0:100,101
10	112808376	.	G	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:0:0:0:0,1:0,0:37,38:0,0	113:2:0:0:8,10:0,0:103,106:0,0
10	112808395	.	A	G	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=AA->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:1:0:0:38,40:0,0:0,1:0,0	121:3:0:0:112,115:0,0:6,10:0,0
10	112808403	.	G	C	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=GG->CG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	41:1:0:0:0,0:0,1:40,42:0,0	121:3:0:0:0,0:7,11:111,115:0,0
10	113744806	.	T	G	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:0:0:0:0,0:0,0:0,0:34,34	99:0:0:0:0,0:0,0:5,5:94,95
10	115047442	.	A	T	.	PASS	NT=ref;QSS=24;QSS_NT=24;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	46:1:0:0:44,45:0,0:1,1:0,0	97:0:0:0:84,84:0,0:0,0:13,13
10	116670335	.	G	A	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:1:0:0:0,0:0,0:34,35:0,0	99:0:0:0:9,9:0,0:89,89:1,1
10	116695543	rs111622144	T	C	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER||||349|TRUB1|protein_coding|CODING|ENST00000298746||1),UPSTREAM(MODIFIER|||||TRUB1|processed_transcript|CODING|ENST00000485065||1);RSPOS=116695543;dbSNPBuildID=132;SSR=0;SAO=0;VP=050000000001000102000100;WGT=1;VC=SNV;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:0:0:0:0,0:0,0:1,1:37,38	81:0:0:0:0,0:9,10:0,0:72,76
10	119252679	.	G	A	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||CTA-109P11.4|3prime_overlapping_ncrna|NON_CODING|ENST00000549104||1),INTRON(MODIFIER|||||EMX2OS|antisense|NON_CODING|ENST00000423419|1|1),INTRON(MODIFIER|||||EMX2OS|antisense|NON_CODING|ENST00000440007|1|1),INTRON(MODIFIER|||||EMX2OS|antisense|NON_CODING|ENST00000450314|1|1),INTRON(MODIFIER|||||EMX2OS|antisense|NON_CODING|ENST00000551288|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	42:0:0:0:0,0:0,0:42,42:0,0	121:0:0:0:12,12:0,0:109,109:0,0
10	120352476	.	A	C	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||370|PRLHR|protein_coding|CODING|ENST00000239032||1),DOWNSTREAM(MODIFIER||||370|PRLHR|protein_coding|CODING|ENST00000369169||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	59:1:0:0:57,58:1,1:0,0:0,0	101:1:0:0:92,93:8,8:0,0:0,0
10	121973769	rs74157741	C	T	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=121973769;GMAF=0.1117;dbSNPBuildID=130;SSR=0;SAO=0;VP=050100000001050116000100;WGT=1;VC=SNV;SLO;VLD;G5;GNO;KGPhase1;KGPROD;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:4:0:0:0,0:36,40:0,0:0,0	104:6:0:0:0,1:93,97:0,0:5,7
10	121973771	rs138019584	C	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=121973771;GMAF=0.0137;dbSNPBuildID=134;SSR=0;SAO=0;VP=050000000005000014000100;WGT=1;VC=SNV;ASP;KGPhase1;KGPROD	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:4:0:0:0,1:34,37:0,0:0,0	105:6:0:0:0,0:94,100:0,0:5,6
10	122831187	.	C	G	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:0:0:0:0,0:33,33:0,0:0,0	107:0:0:0:0,0:99,99:7,7:1,1
10	124144207	.	A	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||383|PLEKHA1|protein_coding|CODING|ENST00000368988|1|1),INTRON(MODIFIER||||383|PLEKHA1|protein_coding|CODING|ENST00000368989|1|1),INTRON(MODIFIER||||404|PLEKHA1|protein_coding|CODING|ENST00000368990|1|1),INTRON(MODIFIER||||404|PLEKHA1|protein_coding|CODING|ENST00000409427|1|1),INTRON(MODIFIER|||||PLEKHA1|processed_transcript|CODING|ENST00000463663|1|1),INTRON(MODIFIER|||||PLEKHA1|processed_transcript|CODING|ENST00000479786|1|1),INTRON(MODIFIER|||||PLEKHA1|processed_transcript|CODING|ENST00000491369|1|1),INTRON(MODIFIER|||||PLEKHA1|processed_transcript|CODING|ENST00000494222|1|1),UPSTREAM(MODIFIER||||113|PLEKHA1|protein_coding|CODING|ENST00000392799||1),UPSTREAM(MODIFIER||||334|PLEKHA1|protein_coding|CODING|ENST00000538022||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:0:0:0:29,30:0,0:0,0:0,0	115:1:0:0:101,103:2,2:11,11:0,0
10	127357855	.	T	A	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||129|TEX36|protein_coding|CODING|ENST00000532135|1|1),INTRON(MODIFIER||||186|TEX36|protein_coding|CODING|ENST00000368821|1|1),INTRON(MODIFIER||||98|TEX36|protein_coding|CODING|ENST00000526819|1|1),UPSTREAM(MODIFIER|||||ALDOAP2|processed_pseudogene|NON_CODING|ENST00000398050||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	42:2:0:0:0,0:0,1:0,0:40,41	92:3:0:0:7,8:0,0:0,0:82,85
10	127357856	.	C	T	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||129|TEX36|protein_coding|CODING|ENST00000532135|1|1),INTRON(MODIFIER||||186|TEX36|protein_coding|CODING|ENST00000368821|1|1),INTRON(MODIFIER||||98|TEX36|protein_coding|CODING|ENST00000526819|1|1),UPSTREAM(MODIFIER|||||ALDOAP2|processed_pseudogene|NON_CODING|ENST00000398050||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	42:2:0:0:0,0:40,41:0,1:0,0	91:3:0:0:0,0:81,83:0,1:7,8
10	128835321	.	T	C	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1865|DOCK1|protein_coding|CODING|ENST00000280333|18|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:0:0:0:0,0:0,0:0,0:39,39	105:5:0:0:0,0:6,7:0,1:94,99
10	128898990	.	G	A	.	PASS	NT=ref;QSS=26;QSS_NT=26;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1865|DOCK1|protein_coding|CODING|ENST00000280333|23|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	52:0:0:0:0,0:0,0:52,52:0,0	101:4:0:0:6,6:0,0:91,95:0,0
10	129464059	.	T	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:0:0:0:0,0:0,0:0,0:32,32	109:8:0:0:0,0:5,5:0,0:96,107
10	132315071	.	G	C	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:2:0:0:0,0:0,0:38,40:0,0	106:1:0:0:0,0:10,10:95,96:0,0
10	133022661	.	C	T	.	PASS	NT=ref;QSS=26;QSS_NT=26;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||586|TCERG1L|protein_coding|CODING|ENST00000368642|4|1),INTRON(MODIFIER|||||TCERG1L|retained_intron|CODING|ENST00000483040|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	51:0:0:0:0,0:51,51:0,0:0,0	105:0:0:0:0,0:95,95:0,0:10,10
10	133142813	rs7475027	A	G	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=133142813;GMAF=0.2312;dbSNPBuildID=116;SSR=0;SAO=0;VP=050100000001040116000100;WGT=1;VC=SNV;SLO;VLD;GNO;KGPhase1;KGPROD;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:0:0:0:34,44:0,0:0,0:0,0	87:3:0:0:79,98:0,0:5,5:0,0
10	133587220	rs9794088	G	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->GT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=133587220;dbSNPBuildID=119;SSR=0;SAO=0;VP=050000000001000002000100;WGT=1;VC=SNV;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	42:2:0:0:0,0:0,0:40,45:0,1	105:9:0:0:1,2:1,1:86,98:8,8
10	133951773	.	C	T	.	PASS	NT=ref;QSS=23;QSS_NT=23;SGT=CC->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER||||844|JAKMIP3|protein_coding|CODING|ENST00000298622|8|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	62:4:0:0:0,0:58,62:0,0:0,1	93:1:0:0:0,0:83,84:1,1:8,8
10	134192446	.	G	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||468|LRRC27|protein_coding|CODING|ENST00000368612||1),DOWNSTREAM(MODIFIER||||530|LRRC27|protein_coding|CODING|ENST00000368613||1),DOWNSTREAM(MODIFIER|||||LRRC27|processed_transcript|CODING|ENST00000462656||1),DOWNSTREAM(MODIFIER|||||LRRC27|processed_transcript|CODING|ENST00000475747||1),UTR_3_PRIME(MODIFIER||||383|LRRC27|protein_coding|CODING|ENST00000392638|12|1),UTR_3_PRIME(MODIFIER||||468|LRRC27|protein_coding|CODING|ENST00000368610|10|1),UTR_3_PRIME(MODIFIER||||530|LRRC27|protein_coding|CODING|ENST00000368614|11|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:1:0:0:0,0:0,0:28,28:0,1	91:4:0:0:0,0:13,14:74,79:0,1
10	134464741	.	A	T	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||137|INPP5A|protein_coding|CODING|ENST00000423490|2|1),INTRON(MODIFIER||||181|INPP5A|protein_coding|CODING|ENST00000451873|4|1),INTRON(MODIFIER||||387|INPP5A|protein_coding|CODING|ENST00000368593|4|1),INTRON(MODIFIER||||412|INPP5A|protein_coding|CODING|ENST00000368594|4|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:1:0:0:36,37:0,0:2,2:0,0	87:2:0:0:73,76:2,3:4,4:6,7
10	134744577	.	T	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1530|TTC40|protein_coding|CODING|ENST00000368582|8|1),INTRON(MODIFIER||||2715|TTC40|protein_coding|CODING|ENST00000368586|8|1),INTRON(MODIFIER||||405|TTC40|protein_coding|CODING|ENST00000368585|8|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	18:2:0:0:0,1:0,1:0,0:16,23	45:7:0:0:0,0:7,12:0,1:31,47
10	134796881	rs183904737	A	G	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=134796881;GMAF=0.0247;dbSNPBuildID=135;SSR=0;SAO=0;VP=050000000005000014000100;WGT=1;VC=SNV;ASP;KGPhase1;KGPROD	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	59:4:0:0:52,56:2,5:1,2:0,0	99:6:0:0:82,93:2,2:9,9:0,0
10	134824953	.	T	G	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	73:1:2:0:0,0:2,2:2,3:68,97	162:12:1:0:0,0:0,0:13,21:137,193
10	134871224	.	A	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	52:3:0:0:48,51:0,1:1,1:0,1	111:5:0:0:97,102:0,0:9,10:0,0
10	134875992	.	C	T	.	PASS	NT=ref;QSS=25;QSS_NT=25;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	51:1:0:0:0,0:50,51:0,0:0,0	89:0:0:0:0,0:80,80:0,0:9,9
10	134999016	.	A	G	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1141|KNDC1|protein_coding|CODING|ENST00000368571|4|1),INTRON(MODIFIER||||1749|KNDC1|protein_coding|CODING|ENST00000304613|5|1),INTRON(MODIFIER||||1751|KNDC1|protein_coding|CODING|ENST00000368572|5|1),INTRON(MODIFIER|||||KNDC1|retained_intron|CODING|ENST00000465195|5|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	44:0:0:0:44,51:0,0:0,0:0,0	86:3:0:0:78,98:0,0:5,6:0,0
10	135463075	.	A	G	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=AA->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	52:0:0:0:51,56:0,0:1,2:0,0	137:2:0:0:124,133:0,0:11,16:0,0
10	135466641	.	C	A	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||KIAA0664P5|unprocessed_pseudogene|NON_CODING|ENST00000438421||1),INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||XX-2136C48.2|unprocessed_pseudogene|NON_CODING|ENST00000554262||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	42:0:0:0:0,0:42,45:0,0:0,0	123:1:0:0:10,11:112,114:0,0:0,1
10	135473838	.	G	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||XX-2136C48.2|unprocessed_pseudogene|NON_CODING|ENST00000554262||1),EXON(MODIFIER|||||KIAA0664P5|unprocessed_pseudogene|NON_CODING|ENST00000438421|2|1),UPSTREAM(MODIFIER|||||AL845259.1|miRNA|NON_CODING|ENST00000408181||1),UPSTREAM(MODIFIER|||||XX-2136C48.8|unprocessed_pseudogene|NON_CODING|ENST00000425409||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:0:0:0:0,0:0,0:34,47:0,1	80:2:0:0:0,0:1,2:70,90:7,11
10	135521626	.	T	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:0:0:0:0,0:0,0:1,1:30,33	90:1:0:0:0,0:8,9:0,0:81,91
11	542222	.	G	A	.	PASS	NT=ref;QSS=30;QSS_NT=30;SGT=GG->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER||||542|LRRC56|protein_coding|CODING|ENST00000270115|5|1),UPSTREAM(MODIFIER|||||HRAS|processed_transcript|CODING|ENST00000468682||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	69:4:0:0:0,0:0,1:65,78:0,0	139:8:0:0:10,11:0,0:121,154:0,0
11	835439	.	T	C	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||294|EFCAB4A|protein_coding|CODING|ENST00000450448||1),DOWNSTREAM(MODIFIER||||294|EFCAB4A|protein_coding|CODING|ENST00000528542||1),DOWNSTREAM(MODIFIER||||399|EFCAB4A|protein_coding|CODING|ENST00000525077||1),DOWNSTREAM(MODIFIER||||67|POLR2L|protein_coding|CODING|ENST00000322028||1),DOWNSTREAM(MODIFIER|||||EFCAB4A|retained_intron|CODING|ENST00000526531||1),DOWNSTREAM(MODIFIER|||||EFCAB4A|retained_intron|CODING|ENST00000527763||1),DOWNSTREAM(MODIFIER|||||EFCAB4A|retained_intron|CODING|ENST00000528694||1),DOWNSTREAM(MODIFIER|||||EFCAB4A|retained_intron|CODING|ENST00000530688||1),DOWNSTREAM(MODIFIER|||||POLR2L|nonsense_mediated_decay|CODING|ENST00000534030||1),INTRON(MODIFIER||||129|CD151|protein_coding|CODING|ENST00000528143|2|1),INTRON(MODIFIER||||169|CD151|protein_coding|CODING|ENST00000530320|1|1),INTRON(MODIFIER||||175|CD151|protein_coding|CODING|ENST00000526693|3|1),INTRON(MODIFIER||||177|CD151|protein_coding|CODING|ENST00000529810|1|1),INTRON(MODIFIER||||179|CD151|protein_coding|CODING|ENST00000524748|2|1),INTRON(MODIFIER||||179|CD151|protein_coding|CODING|ENST00000527341|2|1),INTRON(MODIFIER||||253|CD151|protein_coding|CODING|ENST00000322008|2|1),INTRON(MODIFIER||||253|CD151|protein_coding|CODING|ENST00000397420|2|1),INTRON(MODIFIER||||253|CD151|protein_coding|CODING|ENST00000397421|1|1),INTRON(MODIFIER||||78|CD151|protein_coding|CODING|ENST00000525333|2|1),INTRON(MODIFIER||||89|CD151|protein_coding|CODING|ENST00000528867|1|1),INTRON(MODIFIER||||91|CD151|protein_coding|CODING|ENST00000525718|3|1),INTRON(MODIFIER|||||CD151|nonsense_mediated_decay|CODING|ENST00000530726|2|1),INTRON(MODIFIER|||||CD151|retained_intron|CODING|ENST00000525868|2|1),INTRON(MODIFIER|||||CD151|retained_intron|CODING|ENST00000526661|1|1),INTRON(MODIFIER|||||CD151|retained_intron|CODING|ENST00000530155|1|1),INTRON(MODIFIER|||||CD151|retained_intron|CODING|ENST00000531999|2|1),INTRON(MODIFIER|||||CD151|retained_intron|CODING|ENST00000532045|1|1),UPSTREAM(MODIFIER||||251|CD151|protein_coding|CODING|ENST00000528011||1),UPSTREAM(MODIFIER||||63|CD151|protein_coding|CODING|ENST00000526439||1),UPSTREAM(MODIFIER|||||AP006621.8|antisense|NON_CODING|ENST00000532946||1),UPSTREAM(MODIFIER|||||CD151|processed_transcript|CODING|ENST00000525181||1),UPSTREAM(MODIFIER|||||CD151|retained_intron|CODING|ENST00000532075||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:1:0:0:0,0:0,0:0,0:37,38	95:2:0:0:0,0:10,10:0,0:83,88
11	835477	.	C	T	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||294|EFCAB4A|protein_coding|CODING|ENST00000450448||1),DOWNSTREAM(MODIFIER||||294|EFCAB4A|protein_coding|CODING|ENST00000528542||1),DOWNSTREAM(MODIFIER||||399|EFCAB4A|protein_coding|CODING|ENST00000525077||1),DOWNSTREAM(MODIFIER||||67|POLR2L|protein_coding|CODING|ENST00000322028||1),DOWNSTREAM(MODIFIER|||||EFCAB4A|retained_intron|CODING|ENST00000526531||1),DOWNSTREAM(MODIFIER|||||EFCAB4A|retained_intron|CODING|ENST00000527763||1),DOWNSTREAM(MODIFIER|||||EFCAB4A|retained_intron|CODING|ENST00000528694||1),DOWNSTREAM(MODIFIER|||||EFCAB4A|retained_intron|CODING|ENST00000530688||1),DOWNSTREAM(MODIFIER|||||POLR2L|nonsense_mediated_decay|CODING|ENST00000534030||1),INTRON(MODIFIER||||129|CD151|protein_coding|CODING|ENST00000528143|2|1),INTRON(MODIFIER||||169|CD151|protein_coding|CODING|ENST00000530320|1|1),INTRON(MODIFIER||||175|CD151|protein_coding|CODING|ENST00000526693|3|1),INTRON(MODIFIER||||177|CD151|protein_coding|CODING|ENST00000529810|1|1),INTRON(MODIFIER||||179|CD151|protein_coding|CODING|ENST00000524748|2|1),INTRON(MODIFIER||||179|CD151|protein_coding|CODING|ENST00000527341|2|1),INTRON(MODIFIER||||253|CD151|protein_coding|CODING|ENST00000322008|2|1),INTRON(MODIFIER||||253|CD151|protein_coding|CODING|ENST00000397420|2|1),INTRON(MODIFIER||||253|CD151|protein_coding|CODING|ENST00000397421|1|1),INTRON(MODIFIER||||78|CD151|protein_coding|CODING|ENST00000525333|2|1),INTRON(MODIFIER||||89|CD151|protein_coding|CODING|ENST00000528867|1|1),INTRON(MODIFIER||||91|CD151|protein_coding|CODING|ENST00000525718|3|1),INTRON(MODIFIER|||||CD151|nonsense_mediated_decay|CODING|ENST00000530726|2|1),INTRON(MODIFIER|||||CD151|retained_intron|CODING|ENST00000525868|2|1),INTRON(MODIFIER|||||CD151|retained_intron|CODING|ENST00000526661|1|1),INTRON(MODIFIER|||||CD151|retained_intron|CODING|ENST00000530155|1|1),INTRON(MODIFIER|||||CD151|retained_intron|CODING|ENST00000531999|2|1),INTRON(MODIFIER|||||CD151|retained_intron|CODING|ENST00000532045|1|1),UPSTREAM(MODIFIER||||251|CD151|protein_coding|CODING|ENST00000528011||1),UPSTREAM(MODIFIER||||63|CD151|protein_coding|CODING|ENST00000526439||1),UPSTREAM(MODIFIER|||||AP006621.8|antisense|NON_CODING|ENST00000532946||1),UPSTREAM(MODIFIER|||||CD151|processed_transcript|CODING|ENST00000525181||1),UPSTREAM(MODIFIER|||||CD151|retained_intron|CODING|ENST00000532075||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	43:2:0:0:0,0:41,42:0,1:0,0	94:3:0:0:0,0:85,89:0,0:6,6
11	1092647	rs201749895	C	T	.	PASS	NT=ref;QSS=25;QSS_NT=25;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||408|MUC2|protein_coding|CODING|ENST00000361558|1|1),NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|aCc/aTc|T1489I|2817|MUC2|protein_coding|CODING|ENST00000441003|30|1),NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|aCc/aTc|T1490I|1779|MUC2|protein_coding|CODING|ENST00000359061|30|1),UPSTREAM(MODIFIER||||277|MUC2|protein_coding|CODING|ENST00000333592||1);RSPOS=1092647;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	76:9:0:0:0,0:66,120:0,0:1,2	209:24:0:0:0,0:175,279:0,1:10,14
11	1508271	.	A	G	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||MOB2|processed_transcript|CODING|ENST00000526462|1|1),INTRON(MODIFIER|||||MOB2|retained_intron|CODING|ENST00000529380|1|1),UPSTREAM(MODIFIER||||268|MOB2|protein_coding|CODING|ENST00000329957||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	42:0:0:0:42,45:0,0:0,0:0,0	107:6:0:0:96,104:0,0:5,6:0,0
11	1564447	.	T	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	46:2:0:0:0,0:1,1:0,0:43,46	89:2:0:0:1,1:6,9:0,0:80,87
11	1602891	.	C	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->AC;SOMATIC;TQSS=2;TQSS_NT=2;EFF=DOWNSTREAM(MODIFIER||||278|KRTAP5-1|protein_coding|CODING|ENST00000382171||1),INTRON(MODIFIER|||||RP13-25N22.1|processed_transcript|NON_CODING|ENST00000424148|1|1),INTRON(MODIFIER|||||RP13-25N22.1|processed_transcript|NON_CODING|ENST00000524947|1|1),INTRON(MODIFIER|||||RP13-25N22.1|processed_transcript|NON_CODING|ENST00000532922|1|1),INTRON(MODIFIER|||||RP13-25N22.1|processed_transcript|NON_CODING|ENST00000534077|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	46:2:0:0:0,1:44,46:0,0:0,0	96:6:0:0:10,11:79,82:1,3:0,0
11	2022273	.	G	A	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||H19|lincRNA|NON_CODING|ENST00000428066|1|1),UPSTREAM(MODIFIER|||||H19|lincRNA|NON_CODING|ENST00000411754||1),UPSTREAM(MODIFIER|||||H19|lincRNA|NON_CODING|ENST00000412788||1),UPSTREAM(MODIFIER|||||H19|lincRNA|NON_CODING|ENST00000414790||1),UPSTREAM(MODIFIER|||||H19|lincRNA|NON_CODING|ENST00000417089||1),UPSTREAM(MODIFIER|||||H19|lincRNA|NON_CODING|ENST00000422826||1),UPSTREAM(MODIFIER|||||H19|lincRNA|NON_CODING|ENST00000431095||1),UPSTREAM(MODIFIER|||||H19|lincRNA|NON_CODING|ENST00000439725||1),UPSTREAM(MODIFIER|||||H19|lincRNA|NON_CODING|ENST00000442037||1),UPSTREAM(MODIFIER|||||H19|lincRNA|NON_CODING|ENST00000446406||1),UPSTREAM(MODIFIER|||||H19|lincRNA|NON_CODING|ENST00000447298||1),UPSTREAM(MODIFIER|||||H19|processed_transcript|NON_CODING|ENST00000535745||1),UPSTREAM(MODIFIER|||||H19|retained_intron|NON_CODING|ENST00000411861||1),UPSTREAM(MODIFIER|||||H19|retained_intron|NON_CODING|ENST00000436715||1),UPSTREAM(MODIFIER|||||MIR675|miRNA|NON_CODING|ENST00000390168||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	58:2:0:0:0,0:0,1:56,59:0,0	91:0:0:0:6,6:0,0:85,85:0,0
11	3278870	.	A	G	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	41:4:4:0:36,40:1,2:0,1:0,0	99:8:10:0:74,81:3,5:13,18:1,2
11	3603830	rs200720958	C	T	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||RP13-726E6.2|processed_transcript|NON_CODING|ENST00000527970||1);RSPOS=3603830;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:0:0:0:0,0:40,40:0,0:0,0	100:1:0:0:1,2:93,94:0,0:5,5
11	4288553	rs7358441	A	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=4288553;dbSNPBuildID=116;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:0:0:0:34,34:0,0:0,0:0,0	114:0:0:0:105,110:0,0:9,9:0,0
11	4926307	.	T	C	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||261|MMP26|protein_coding|CODING|ENST00000380390|1|1),INTRON(MODIFIER|||||MMP26|processed_transcript|CODING|ENST00000477339|2|1),UPSTREAM(MODIFIER||||312|OR51A7|protein_coding|CODING|ENST00000359350||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:0:0:0:0,0:0,0:0,0:39,39	83:1:0:0:0,0:6,6:0,0:76,78
11	7701596	.	A	T	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER||||188|CYB5R2|protein_coding|CODING|ENST00000524608||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	44:1:0:0:43,43:0,1:0,0:0,0	115:0:0:0:104,104:0,0:0,0:11,11
11	8663388	.	A	C	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||TRIM66|processed_transcript|CODING|ENST00000529057||1),DOWNSTREAM(MODIFIER|||||TRIM66|processed_transcript|CODING|ENST00000531498||1),INTRON(MODIFIER||||1216|TRIM66|protein_coding|CODING|ENST00000299550|8|1),INTRON(MODIFIER||||1245|TRIM66|protein_coding|CODING|ENST00000402157|10|1),INTRON(MODIFIER|||||TRIM66|retained_intron|CODING|ENST00000481014|8|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:1:0:0:35,36:0,0:0,0:0,0	105:0:0:0:95,95:10,10:0,0:0,0
11	10168065	.	G	A	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1849|SBF2|protein_coding|CODING|ENST00000256190|2|1),INTRON(MODIFIER|||||SBF2|retained_intron|CODING|ENST00000533770|1|1),UPSTREAM(MODIFIER|||||RP11-748C4.1|antisense|NON_CODING|ENST00000532735||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:1:0:0:0,0:0,0:36,37:0,0	105:1:0:0:13,14:0,0:91,91:0,0
11	10625869	.	A	G	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||MRVI1-AS1|antisense|NON_CODING|ENST00000525578||1),DOWNSTREAM(MODIFIER|||||MRVI1-AS1|antisense|NON_CODING|ENST00000529829||1),DOWNSTREAM(MODIFIER|||||MRVI1-AS1|antisense|NON_CODING|ENST00000529979||1),INTRON(MODIFIER||||597|MRVI1|protein_coding|CODING|ENST00000424001|11|1),INTRON(MODIFIER||||597|MRVI1|protein_coding|CODING|ENST00000545852|12|1),INTRON(MODIFIER||||597|MRVI1|protein_coding|CODING|ENST00000558540|13|1),INTRON(MODIFIER||||706|MRVI1|protein_coding|CODING|ENST00000541483|12|1),INTRON(MODIFIER||||821|MRVI1|protein_coding|CODING|ENST00000527509|13|1),INTRON(MODIFIER||||821|MRVI1|protein_coding|CODING|ENST00000547195|12|1),INTRON(MODIFIER||||821|MRVI1|protein_coding|CODING|ENST00000552103|12|1),INTRON(MODIFIER||||885|MRVI1|protein_coding|CODING|ENST00000436272|12|1),INTRON(MODIFIER||||903|MRVI1|protein_coding|CODING|ENST00000421747|12|1),INTRON(MODIFIER||||904|MRVI1|protein_coding|CODING|ENST00000531107|12|1),INTRON(MODIFIER||||912|MRVI1|protein_coding|CODING|ENST00000423302|13|1),INTRON(MODIFIER|||||LYVE1|processed_transcript|CODING|ENST00000531706|1|1),INTRON(MODIFIER|||||MRVI1|nonsense_mediated_decay|CODING|ENST00000526414|12|1),INTRON(MODIFIER|||||MRVI1|nonsense_mediated_decay|CODING|ENST00000529448|11|1),INTRON(MODIFIER|||||MRVI1|nonsense_mediated_decay|CODING|ENST00000534266|11|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:1:0:0:34,35:0,1:0,0:0,0	99:1:0:0:92,94:1,1:5,5:0,0
11	11082217	.	C	A	.	PASS	NT=ref;QSS=23;QSS_NT=23;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	46:0:0:0:0,0:46,46:0,0:0,0	102:1:0:0:5,5:96,97:0,0:0,0
11	12522131	.	C	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||208|PARVA|protein_coding|CODING|ENST00000528916|5|1),INTRON(MODIFIER||||290|PARVA|protein_coding|CODING|ENST00000538608|5|1),INTRON(MODIFIER||||372|PARVA|protein_coding|CODING|ENST00000539723|5|1),INTRON(MODIFIER||||372|PARVA|protein_coding|CODING|ENST00000550549|5|1),INTRON(MODIFIER||||412|PARVA|protein_coding|CODING|ENST00000334956|5|1),INTRON(MODIFIER|||||PARVA|processed_transcript|CODING|ENST00000533392|3|1),INTRON(MODIFIER|||||PARVA|retained_intron|CODING|ENST00000533345|5|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:2:0:0:0,0:28,30:0,0:0,0	110:0:0:0:0,0:102,102:8,8:0,0
11	12522390	.	C	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||208|PARVA|protein_coding|CODING|ENST00000528916|5|1),INTRON(MODIFIER||||290|PARVA|protein_coding|CODING|ENST00000538608|5|1),INTRON(MODIFIER||||372|PARVA|protein_coding|CODING|ENST00000539723|5|1),INTRON(MODIFIER||||372|PARVA|protein_coding|CODING|ENST00000550549|5|1),INTRON(MODIFIER||||412|PARVA|protein_coding|CODING|ENST00000334956|5|1),INTRON(MODIFIER|||||PARVA|processed_transcript|CODING|ENST00000533392|3|1),INTRON(MODIFIER|||||PARVA|retained_intron|CODING|ENST00000533345|5|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:1:0:0:0,1:29,29:0,0:0,0	95:2:0:0:0,0:85,86:1,1:7,10
11	13577973	rs149556375	T	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=13577973;dbSNPBuildID=134;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:0:0:0:0,0:0,0:0,0:40,40	91:1:0:0:0,0:7,11:0,0:83,85
11	15068343	.	G	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||138|CALCB|protein_coding|CODING|ENST00000523376|6|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:1:0:0:0,0:0,0:33,34:0,0	97:4:0:0:5,5:0,0:88,92:0,0
11	15563671	.	G	A	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	43:1:0:0:0,0:0,0:42,43:0,0	90:0:0:0:5,5:0,0:84,84:1,1
11	18955350	.	C	A	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||322|MRGPRX1|protein_coding|CODING|ENST00000302797||1),DOWNSTREAM(MODIFIER|||||MRGPRX1|processed_transcript|CODING|ENST00000526914||1),INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||RP11-583F24.8|antisense|NON_CODING|ENST00000528646||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:0:0:0:0,0:38,38:0,0:0,0	88:0:0:0:7,7:81,81:0,0:0,0
11	20195321	.	C	T	.	PASS	NT=ref;QSS=23;QSS_NT=23;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	46:1:0:0:0,0:45,46:0,0:0,0	103:0:0:0:0,0:93,93:0,0:10,10
11	20814800	.	G	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||753|NELL1|protein_coding|CODING|ENST00000325319|3|1),INTRON(MODIFIER||||763|NELL1|protein_coding|CODING|ENST00000532434|3|1),INTRON(MODIFIER||||810|NELL1|protein_coding|CODING|ENST00000357134|3|1),INTRON(MODIFIER||||838|NELL1|protein_coding|CODING|ENST00000298925|4|1),INTRON(MODIFIER|||||NELL1|processed_transcript|CODING|ENST00000524738|1|1),INTRON(MODIFIER|||||NELL1|processed_transcript|CODING|ENST00000527873|3|1),INTRON(MODIFIER|||||NELL1|processed_transcript|CODING|ENST00000528046|2|1),INTRON(MODIFIER|||||NELL1|processed_transcript|CODING|ENST00000529595|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:0:0:0:0,0:0,0:31,31:0,0	92:1:0:0:0,0:0,0:82,82:9,10
11	20973233	.	G	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||753|NELL1|protein_coding|CODING|ENST00000325319|10|1),INTRON(MODIFIER||||763|NELL1|protein_coding|CODING|ENST00000532434|11|1),INTRON(MODIFIER||||810|NELL1|protein_coding|CODING|ENST00000357134|11|1),INTRON(MODIFIER||||838|NELL1|protein_coding|CODING|ENST00000298925|12|1),INTRON(MODIFIER|||||NELL1|processed_transcript|CODING|ENST00000530672|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:0:0:0:0,0:0,0:29,29:0,0	118:0:0:0:0,0:0,0:111,111:7,7
11	21932153	.	G	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:0:0:0:0,0:0,0:30,31:0,0	124:1:0:0:0,0:0,0:113,115:10,10
11	22025979	.	T	A	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	41:1:0:0:0,0:0,0:0,0:40,40	120:1:0:0:8,8:0,0:0,0:111,112
11	22103730	.	C	T	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	43:1:0:0:0,0:42,43:0,0:0,0	130:0:0:0:0,0:120,120:0,0:10,10
11	22264335	.	A	G	.	PASS	NT=ref;QSS=24;QSS_NT=24;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||913|ANO5|protein_coding|CODING|ENST00000324559|9|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	48:0:0:0:48,49:0,0:0,0:0,0	113:1:0:0:103,103:0,0:9,10:0,0
11	22442901	.	G	T	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	42:0:0:0:0,0:0,0:42,42:0,0	122:2:0:0:0,0:0,0:113,115:7,7
11	22601037	.	G	A	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:1:0:0:0,0:0,0:34,35:0,0	111:4:0:0:6,6:0,0:101,105:0,0
11	22982015	.	A	C	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:0:0:0:40,40:0,0:0,0:0,0	110:3:0:0:100,103:7,8:0,0:0,0
11	23114368	.	T	C	.	PASS	NT=ref;QSS=23;QSS_NT=23;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	47:0:0:0:0,0:0,0:0,0:47,47	115:0:0:0:0,0:6,6:0,0:109,109
11	23114443	.	C	G	.	PASS	NT=ref;QSS=26;QSS_NT=26;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	52:1:0:0:0,0:51,52:0,0:0,0	111:3:0:0:0,0:102,105:6,6:0,0
11	23321193	rs200807101	A	G	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=AA->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=23321193;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	21:0:0:0:21,25:0,0:0,1:0,0	63:0:0:0:43,55:0,0:20,22:0,0
11	23357163	.	G	T	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:0:0:0:0,0:0,0:38,38:0,0	91:2:0:0:0,1:0,0:83,84:6,7
11	23536924	.	T	G	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||RP11-713P14.1|processed_pseudogene|NON_CODING|ENST00000474589||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:0:0:0:0,0:0,0:0,0:32,32	93:0:0:0:0,0:0,0:6,6:87,87
11	23890977	.	T	G	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	43:1:0:0:0,0:0,0:0,0:42,43	114:1:0:0:0,0:0,0:8,8:105,107
11	23910044	rs138145947	A	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=23910044;GMAF=0.0449;dbSNPBuildID=134;SSR=0;SAO=0;VP=050000000005000016000100;WGT=1;VC=SNV;ASP;KGPhase1;KGPROD;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:0:0:0:32,32:0,0:0,0:0,0	109:0:0:0:101,102:0,0:0,0:8,8
11	24623691	.	T	C	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||175|LUZP2|protein_coding|CODING|ENST00000529015|1|1),INTRON(MODIFIER||||260|LUZP2|protein_coding|CODING|ENST00000533227|1|1),INTRON(MODIFIER||||346|LUZP2|protein_coding|CODING|ENST00000336930|1|1),INTRON(MODIFIER|||||LUZP2|processed_transcript|CODING|ENST00000405855|1|1),INTRON(MODIFIER|||||LUZP2|processed_transcript|CODING|ENST00000449567|1|1),INTRON(MODIFIER|||||LUZP2|processed_transcript|CODING|ENST00000531187|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	50:9:0:0:0,0:0,0:0,0:41,61	173:37:0:0:0,0:7,11:0,0:129,186
11	24947851	.	G	A	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||175|LUZP2|protein_coding|CODING|ENST00000529015|5|1),INTRON(MODIFIER||||260|LUZP2|protein_coding|CODING|ENST00000533227|7|1),INTRON(MODIFIER||||346|LUZP2|protein_coding|CODING|ENST00000336930|7|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:1:0:0:0,0:0,0:36,42:0,0	86:5:3:0:5,10:0,0:76,88:0,0
11	24947852	.	T	C	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||175|LUZP2|protein_coding|CODING|ENST00000529015|5|1),INTRON(MODIFIER||||260|LUZP2|protein_coding|CODING|ENST00000533227|7|1),INTRON(MODIFIER||||346|LUZP2|protein_coding|CODING|ENST00000336930|7|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:1:0:0:0,0:0,0:0,0:35,41	85:4:3:0:0,0:5,10:0,0:76,87
11	24947863	.	A	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=AA->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER||||175|LUZP2|protein_coding|CODING|ENST00000529015|5|1),INTRON(MODIFIER||||260|LUZP2|protein_coding|CODING|ENST00000533227|7|1),INTRON(MODIFIER||||346|LUZP2|protein_coding|CODING|ENST00000336930|7|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:1:0:0:33,39:0,0:0,1:0,0	84:7:0:0:69,91:0,0:8,8:0,0
11	25057463	.	C	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||260|LUZP2|protein_coding|CODING|ENST00000533227|9|1),INTRON(MODIFIER||||346|LUZP2|protein_coding|CODING|ENST00000336930|9|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:1:0:0:0,0:30,31:0,0:0,0	101:1:0:0:12,12:88,89:0,0:0,0
11	25264335	.	G	A	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:0:0:0:0,0:0,0:35,36:0,0	86:1:0:0:4,4:0,0:81,82:0,0
11	25531028	.	G	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	49:0:0:0:0,0:0,0:49,49:0,0	95:1:0:0:0,0:6,7:88,88:0,0
11	25769585	rs199555955	T	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-405K6.1|lincRNA|NON_CODING|ENST00000526327|2|1),INTRON(MODIFIER|||||RP11-405K6.1|lincRNA|NON_CODING|ENST00000533049|1|1),INTRON(MODIFIER|||||RP11-405K6.1|lincRNA|NON_CODING|ENST00000533942|2|1);RSPOS=25769585;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:0:0:0:1,1:0,0:0,0:31,32	60:0:0:0:16,20:0,0:0,0:44,56
11	25769644	.	A	C	.	PASS	NT=ref;QSS=25;QSS_NT=25;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-405K6.1|lincRNA|NON_CODING|ENST00000526327|2|1),INTRON(MODIFIER|||||RP11-405K6.1|lincRNA|NON_CODING|ENST00000533049|1|1),INTRON(MODIFIER|||||RP11-405K6.1|lincRNA|NON_CODING|ENST00000533942|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:0:0:0:29,30:0,0:0,0:0,0	68:0:0:0:55,60:13,16:0,0:0,0
11	25769682	.	C	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-405K6.1|lincRNA|NON_CODING|ENST00000526327|2|1),INTRON(MODIFIER|||||RP11-405K6.1|lincRNA|NON_CODING|ENST00000533049|1|1),INTRON(MODIFIER|||||RP11-405K6.1|lincRNA|NON_CODING|ENST00000533942|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	27:0:0:0:0,0:27,30:0,0:0,0	67:0:0:0:0,0:59,67:0,0:8,11
11	25825153	.	T	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:1:0:0:0,0:0,0:0,0:32,33	99:0:0:0:0,0:6,6:0,0:93,95
11	26962242	.	C	A	.	PASS	NT=ref;QSS=23;QSS_NT=23;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	45:0:0:0:0,0:45,45:0,0:0,0	107:1:0:0:9,9:97,98:0,0:0,0
11	27137489	.	T	A	.	PASS	NT=ref;QSS=27;QSS_NT=27;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||387|BBOX1|protein_coding|CODING|ENST00000263182|6|1),INTRON(MODIFIER||||387|BBOX1|protein_coding|CODING|ENST00000525090|4|1),INTRON(MODIFIER||||387|BBOX1|protein_coding|CODING|ENST00000528583|5|1),INTRON(MODIFIER||||387|BBOX1|protein_coding|CODING|ENST00000529202|5|1),INTRON(MODIFIER|||||BBOX1|processed_transcript|CODING|ENST00000527505|3|1),INTRON(MODIFIER|||||RP11-1L12.3|antisense|NON_CODING|ENST00000525302|3|1),INTRON(MODIFIER|||||RP11-1L12.3|antisense|NON_CODING|ENST00000526061|3|1),INTRON(MODIFIER|||||RP11-1L12.3|antisense|NON_CODING|ENST00000530430|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	55:0:0:0:0,0:0,0:0,0:55,55	120:2:0:0:10,11:0,0:1,1:107,108
11	27966105	.	G	A	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	42:0:0:0:0,0:0,0:42,46:0,0	100:0:0:0:8,8:0,0:92,105:0,0
11	28929128	.	A	G	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-115J23.1|lincRNA|NON_CODING|ENST00000511073|1|1),INTRON(MODIFIER|||||RP11-115J23.1|lincRNA|NON_CODING|ENST00000513853|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:0:0:0:33,33:0,0:0,0:0,0	109:0:0:0:101,101:0,0:8,8:0,0
11	29323770	.	G	A	.	PASS	NT=ref;QSS=25;QSS_NT=25;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	49:0:0:0:0,0:0,0:49,49:0,0	75:1:0:0:6,6:0,0:68,69:0,0
11	29783151	.	A	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||CTD-3138F19.1|processed_transcript|NON_CODING|ENST00000530249|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	28:0:0:0:28,28:0,0:0,0:0,0	104:0:0:0:90,90:1,1:0,0:13,13
11	29829246	.	T	G	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||CTD-3138F19.1|processed_transcript|NON_CODING|ENST00000530249|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:0:0:0:0,0:0,0:0,0:35,35	97:3:0:0:0,0:0,0:7,7:87,90
11	29846060	.	A	C	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||CTD-3138F19.1|processed_transcript|NON_CODING|ENST00000530249|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:0:0:0:37,37:0,0:0,0:0,0	126:3:0:0:116,118:7,7:0,0:0,0
11	30104854	.	G	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER|||||RP11-624D11.2|lincRNA|NON_CODING|ENST00000527819|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:1:0:0:0,1:0,0:34,35:0,0	106:3:0:0:15,16:0,0:88,90:0,0
11	31355359	.	T	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||354|DCDC1|protein_coding|CODING|ENST00000452803|2|1),INTRON(MODIFIER|||||DCDC1|nonsense_mediated_decay|CODING|ENST00000342355|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:0:0:0:0,0:0,0:0,0:29,29	116:0:0:0:0,0:5,5:0,0:111,111
11	35169989	.	G	T	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||139|CD44|protein_coding|CODING|ENST00000278386|1|1),INTRON(MODIFIER||||340|CD44|protein_coding|CODING|ENST00000352818|1|1),INTRON(MODIFIER||||361|CD44|protein_coding|CODING|ENST00000263398|1|1),INTRON(MODIFIER||||396|CD44|protein_coding|CODING|ENST00000360158|1|1),INTRON(MODIFIER||||429|CD44|protein_coding|CODING|ENST00000434472|1|1),INTRON(MODIFIER||||493|CD44|protein_coding|CODING|ENST00000433892|1|1),INTRON(MODIFIER||||674|CD44|protein_coding|CODING|ENST00000437706|1|1),INTRON(MODIFIER||||699|CD44|protein_coding|CODING|ENST00000415148|1|1),INTRON(MODIFIER||||699|CD44|protein_coding|CODING|ENST00000449691|1|1),INTRON(MODIFIER||||714|CD44|protein_coding|CODING|ENST00000433354|1|1),INTRON(MODIFIER||||742|CD44|protein_coding|CODING|ENST00000428726|1|1),INTRON(MODIFIER||||78|CD44|protein_coding|CODING|ENST00000526025|1|1),INTRON(MODIFIER|||||CD44|nonsense_mediated_decay|CODING|ENST00000425428|1|1),INTRON(MODIFIER|||||CD44|processed_transcript|CODING|ENST00000528086|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:0:0:0:0,0:0,0:38,38:0,0	114:0:0:0:0,0:0,0:105,105:9,9
11	35858285	.	T	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:1:0:0:0,0:0,0:0,0:30,31	97:5:0:0:1,1:0,0:5,5:86,91
11	36539206	.	G	A	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RAG1|nonsense_mediated_decay|CODING|ENST00000534663|1|1),INTRON(MODIFIER|||||RAG1|processed_transcript|CODING|ENST00000529126|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:0:0:0:0,0:0,0:38,38:0,0	117:0:0:0:11,11:0,0:106,106:0,0
11	38258833	.	C	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:2:0:0:0,0:32,34:0,0:0,0	98:5:0:0:0,0:88,93:0,0:5,5
11	38584416	.	G	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:0:0:0:0,0:0,0:30,30:0,0	90:1:0:0:0,0:0,0:82,82:7,8
11	38781824	.	T	A	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:0:0:0:0,0:0,0:0,0:38,38	110:0:0:0:7,7:0,0:0,0:103,103
11	38848840	.	A	C	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:1:0:0:39,40:0,0:0,0:0,0	117:2:0:0:103,105:12,12:0,0:0,0
11	39292656	.	T	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:0:0:0:0,0:0,0:0,0:31,31	91:2:0:0:0,0:12,13:0,0:77,79
11	39293368	.	C	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:0:0:0:0,0:34,34:0,0:0,0	116:2:0:0:0,1:100,101:0,0:14,14
11	39701144	.	G	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:0:0:0:0,0:0,0:35,35:0,0	86:1:0:0:0,0:0,0:81,82:4,4
11	39970022	.	C	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:0:0:0:0,0:34,34:0,0:0,0	110:0:0:0:0,0:101,101:0,0:9,9
11	40010033	.	C	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	28:0:0:0:0,0:28,28:0,1:0,0	101:0:0:0:0,0:94,94:0,0:7,7
11	40067781	.	A	T	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	41:0:0:0:41,41:0,0:0,0:0,0	114:1:0:0:107,107:1,1:0,0:5,6
11	41331653	.	T	G	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||640|LRRC4C|protein_coding|CODING|ENST00000528697|1|1),INTRON(MODIFIER||||640|LRRC4C|protein_coding|CODING|ENST00000530763|1|1),INTRON(MODIFIER|||||LRRC4C|processed_transcript|CODING|ENST00000534577|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:1:0:0:0,0:0,0:0,0:37,38	123:0:0:0:0,0:0,0:13,13:110,110
11	41700758	.	T	A	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-124G5.3|lincRNA|NON_CODING|ENST00000526978|2|1),INTRON(MODIFIER|||||RP11-124G5.3|lincRNA|NON_CODING|ENST00000531210|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:0:0:0:0,0:0,0:0,0:39,39	115:3:0:0:6,6:1,1:0,1:105,107
11	42017440	.	T	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-148I19.1|lincRNA|NON_CODING|ENST00000527828|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:0:0:0:0,0:0,0:0,0:31,31	108:1:0:0:0,0:8,8:0,0:99,100
11	42211729	.	C	T	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||CTD-2572N17.1|lincRNA|NON_CODING|ENST00000525641|3|1),INTRON(MODIFIER|||||CTD-2572N17.1|lincRNA|NON_CODING|ENST00000530387|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:0:0:0:0,0:39,39:0,0:0,0	94:0:0:0:0,0:86,86:0,0:8,8
11	42282369	.	T	C	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	41:0:0:0:0,0:0,0:0,0:41,41	122:0:0:0:0,0:10,10:0,0:112,112
11	44609099	.	C	T	.	PASS	NT=ref;QSS=28;QSS_NT=28;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=EXON(MODIFIER|||||CD82|retained_intron|CODING|ENST00000525898|2|1),EXON(MODIFIER|||||CD82|retained_intron|CODING|ENST00000529853|1|1),INTRON(MODIFIER|||||CD82|processed_transcript|CODING|ENST00000529277|2|1),SYNONYMOUS_CODING(LOW|SILENT|ttC/ttT|F32|160|CD82|protein_coding|CODING|ENST00000526958|2|1),SYNONYMOUS_CODING(LOW|SILENT|ttC/ttT|F55|178|CD82|protein_coding|CODING|ENST00000527737|3|1),UTR_5_PRIME(MODIFIER||||103|CD82|protein_coding|CODING|ENST00000525813|2|1),UTR_5_PRIME(MODIFIER||||107|CD82|protein_coding|CODING|ENST00000532544|3|1),UTR_5_PRIME(MODIFIER||||242|CD82|protein_coding|CODING|ENST00000342935|2|1),UTR_5_PRIME(MODIFIER||||267|CD82|protein_coding|CODING|ENST00000227155|2|1),UTR_5_PRIME(MODIFIER||||37|CD82|protein_coding|CODING|ENST00000525210|2|1),UTR_5_PRIME(MODIFIER||||67|CD82|protein_coding|CODING|ENST00000524704|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	57:1:0:0:0,0:56,57:0,0:0,0	118:2:0:0:0,0:105,107:0,0:11,11
11	45420556	.	T	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=TT->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER|||||RP11-430H10.4|lincRNA|NON_CODING|ENST00000528445|2|1),UPSTREAM(MODIFIER|||||RP11-430H10.3|lincRNA|NON_CODING|ENST00000534604||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	46:0:0:0:0,0:0,1:0,0:46,47	102:4:0:0:0,1:8,11:0,0:90,93
11	46919574	.	C	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||132|LRP4|protein_coding|CODING|ENST00000534404||1),INTRON(MODIFIER||||1905|LRP4|protein_coding|CODING|ENST00000378623|7|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	46:3:0:0:0,0:43,51:0,0:0,0	110:6:0:0:0,0:98,113:0,0:6,10
11	47059644	.	G	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->CG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER||||234|C11orf49|protein_coding|CODING|ENST00000536126|2|1),INTRON(MODIFIER||||247|C11orf49|protein_coding|CODING|ENST00000543718|2|1),INTRON(MODIFIER||||274|C11orf49|protein_coding|CODING|ENST00000395460|2|1),INTRON(MODIFIER||||326|C11orf49|protein_coding|CODING|ENST00000378618|2|1),INTRON(MODIFIER||||331|C11orf49|protein_coding|CODING|ENST00000278460|2|1),INTRON(MODIFIER||||337|C11orf49|protein_coding|CODING|ENST00000378615|2|1),INTRON(MODIFIER|||||C11orf49|nonsense_mediated_decay|CODING|ENST00000525279|3|1),INTRON(MODIFIER|||||C11orf49|nonsense_mediated_decay|CODING|ENST00000525895|1|1),INTRON(MODIFIER|||||C11orf49|nonsense_mediated_decay|CODING|ENST00000526424|3|1),INTRON(MODIFIER|||||C11orf49|nonsense_mediated_decay|CODING|ENST00000527667|3|1),INTRON(MODIFIER|||||C11orf49|nonsense_mediated_decay|CODING|ENST00000527784|2|1),INTRON(MODIFIER|||||C11orf49|nonsense_mediated_decay|CODING|ENST00000528488|2|1),INTRON(MODIFIER|||||C11orf49|nonsense_mediated_decay|CODING|ENST00000532633|3|1),INTRON(MODIFIER|||||C11orf49|processed_transcript|CODING|ENST00000527234|1|1),INTRON(MODIFIER|||||C11orf49|processed_transcript|CODING|ENST00000533124|1|1),INTRON(MODIFIER|||||C11orf49|retained_intron|CODING|ENST00000522712|2|1),INTRON(MODIFIER|||||C11orf49|retained_intron|CODING|ENST00000532840|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:1:0:0:0,0:0,0:35,47:0,0	72:5:0:0:0,0:4,4:63,90:0,0
11	47325410	.	T	C	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1479|MADD|protein_coding|CODING|ENST00000406482|22|1),INTRON(MODIFIER||||1541|MADD|protein_coding|CODING|ENST00000395344|22|1),INTRON(MODIFIER||||1545|MADD|protein_coding|CODING|ENST00000402799|22|1),INTRON(MODIFIER||||1565|MADD|protein_coding|CODING|ENST00000407859|23|1),INTRON(MODIFIER||||1581|MADD|protein_coding|CODING|ENST00000395336|24|1),INTRON(MODIFIER||||1587|MADD|protein_coding|CODING|ENST00000402192|22|1),INTRON(MODIFIER||||1588|MADD|protein_coding|CODING|ENST00000342922|22|1),INTRON(MODIFIER||||1608|MADD|protein_coding|CODING|ENST00000349238|23|1),INTRON(MODIFIER||||1647|MADD|protein_coding|CODING|ENST00000311027|24|1),INTRON(MODIFIER||||439|MADD|protein_coding|CODING|ENST00000405573|4|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	43:0:0:0:0,0:0,0:0,0:43,44	91:1:0:0:0,0:9,10:0,0:81,83
11	48829698	.	A	G	.	PASS	NT=ref;QSS=31;QSS_NT=31;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	85:23:0:0:62,155:0,1:0,0:0,1	235:50:0:0:175,400:0,1:8,15:2,6
11	48842006	.	T	A	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=TT->AT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	71:10:0:0:0,6:0,3:0,0:61,124	158:20:0:0:7,21:0,5:0,0:131,282
11	48855116	.	G	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	56:10:0:0:0,0:0,0:46,103:0,0	140:15:0:0:6,9:0,1:119,230:0,0
11	48865358	.	T	C	.	PASS	NT=ref;QSS=23;QSS_NT=23;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	46:1:0:0:0,0:0,2:0,0:45,94	155:6:0:0:0,1:9,18:1,2:139,256
11	48868922	.	C	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:1:0:0:1,1:28,31:0,0:0,0	93:1:0:0:0,0:85,94:1,1:6,7
11	48890193	.	T	A	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	99:18:0:0:0,5:0,1:0,0:81,223	256:54:0:0:8,29:0,4:0,1:194,523
11	48899115	.	T	G	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||RP11-56P9.10|unprocessed_pseudogene|NON_CODING|ENST00000530465||1),INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||RP11-56P9.5|unprocessed_pseudogene|NON_CODING|ENST00000525520||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	49:10:0:0:0,1:0,0:0,3:39,81	188:31:0:0:0,9:0,0:8,15:149,267
11	48958464	rs112893668	A	G	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=48958464;dbSNPBuildID=132;SSR=0;SAO=0;VP=050000000009000002000100;WGT=1;VC=SNV;CFL;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	45:2:0:0:43,87:0,1:0,3:0,0	157:14:0:0:133,279:0,0:9,13:1,1
11	50408457	.	T	C	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	44:3:0:0:0,0:0,0:0,0:41,70	122:8:0:0:0,0:9,10:0,1:105,189
11	50408504	.	G	A	.	PASS	NT=ref;QSS=27;QSS_NT=27;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	66:13:0:0:0,0:0,0:53,147:0,1	148:21:0:0:8,9:0,0:119,341:0,0
11	50455583	.	T	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:1:0:0:0,0:0,0:0,0:30,31	107:1:0:0:6,6:1,1:0,0:99,100
11	50641334	.	T	C	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	42:3:0:0:0,1:0,1:0,0:39,49	115:2:0:0:0,0:7,12:1,1:105,128
11	50698587	.	C	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:1:0:0:0,1:38,43:0,0:0,0	133:6:0:0:0,4:120,140:0,0:7,8
11	50701306	.	T	C	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	55:8:0:0:0,0:1,3:0,0:46,107	176:34:0:0:0,1:7,20:2,4:133,332
11	50716782	.	A	C	.	PASS	NT=ref;QSS=26;QSS_NT=26;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	113:12:0:0:99,254:0,5:1,2:1,3	300:42:0:0:250,628:7,20:0,4:1,9
11	50716856	.	C	G	.	PASS	NT=ref;QSS=38;QSS_NT=38;SGT=CC->CG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	106:11:0:0:0,0:94,245:0,5:1,5	286:35:0:0:1,2:241,569:9,22:0,11
11	50748945	.	C	G	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	41:3:0:0:0,1:38,68:0,3:0,0	169:18:0:0:0,0:143,240:7,15:1,1
11	50750208	rs199580204	G	T	.	PASS	NT=ref;QSS=23;QSS_NT=23;SGT=GG->GT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=50750208;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	52:2:0:0:0,0:0,1:50,69:0,4	156:7:0:0:0,0:0,0:139,205:10,41
11	50751695	.	C	T	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=CC->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	44:1:0:0:2,2:41,49:0,0:0,1	113:0:0:0:2,2:98,101:0,1:13,16
11	50753108	.	T	C	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	89:11:0:0:1,3:1,5:0,0:76,161	233:28:0:0:0,10:9,24:0,0:196,384
11	50768189	.	C	G	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->CG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	63:2:0:0:0,0:61,78:0,4:0,0	170:5:0:0:0,4:155,225:10,21:0,0
11	50771138	.	C	A	.	PASS	NT=ref;QSS=26;QSS_NT=26;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	91:12:0:0:0,5:78,162:0,2:1,3	202:30:0:0:8,26:161,383:2,9:1,4
11	51569243	.	A	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	54:6:0:0:48,95:0,0:0,4:0,2	155:19:0:0:129,220:0,1:7,13:0,2
11	51581933	.	C	G	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=CC->CG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	106:3:0:0:0,0:102,140:1,4:0,0	304:10:0:0:0,0:280,376:13,17:1,1
11	54911078	.	C	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->CG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:0:0:0:0,0:37,37:0,0:0,0	112:2:0:0:1,1:104,105:4,4:1,1
11	54952191	.	C	G	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:0:0:0:0,0:31,32:0,0:0,0	73:3:0:0:1,3:58,62:11,11:0,0
11	54998656	rs77050199	A	G	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=54998656;dbSNPBuildID=131;SSR=0;SAO=0;VP=050100000005000102000100;WGT=1;VC=SNV;SLO;ASP;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	42:1:0:0:41,54:0,0:0,0:0,0	132:4:0:0:123,158:0,0:5,8:0,0
11	55013433	.	C	A	.	PASS	NT=ref;QSS=29;QSS_NT=29;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	109:26:0:0:0,5:83,239:0,1:0,2	278:45:0:0:9,28:224,638:0,8:0,9
11	55014894	.	C	G	.	PASS	NT=ref;QSS=27;QSS_NT=27;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	66:12:0:0:0,0:54,93:0,0:0,0	158:34:0:0:2,2:114,214:8,10:0,1
11	55040910	.	T	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||224|TRIM48|protein_coding|CODING|ENST00000417545||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:0:0:0:0,0:0,0:0,0:29,31	108:0:0:0:0,0:9,10:0,0:99,108
11	55947057	.	A	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||312|OR5J2|protein_coding|CODING|ENST00000312298||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:1:0:0:33,34:0,0:0,0:0,0	123:4:0:0:114,117:0,0:5,5:0,1
11	56389846	.	G	A	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||RP11-116P9.7|unprocessed_pseudogene|NON_CODING|ENST00000532136||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	43:0:0:0:0,0:0,0:43,43:0,0	112:0:0:0:10,10:0,0:102,102:0,0
11	57611576	.	G	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	46:0:0:0:0,0:0,0:46,46:0,0	97:1:0:0:4,4:0,0:92,95:0,0
11	57796572	.	G	T	.	PASS	NT=ref;QSS=23;QSS_NT=23;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||310|OR9Q1|protein_coding|CODING|ENST00000335397|1|1),UPSTREAM(MODIFIER||||317|OR6Q1|protein_coding|CODING|ENST00000302622||1),UPSTREAM(MODIFIER|||||U6|snRNA|NON_CODING|ENST00000363947||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	44:0:0:0:0,0:0,0:44,44:0,0	117:1:0:0:0,0:0,0:102,103:14,14
11	61378896	.	G	A	.	PASS	NT=ref;QSS=23;QSS_NT=23;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||RP11-855O10.2|lincRNA|NON_CODING|ENST00000506329||1),INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||RPLP0P2|processed_transcript|NON_CODING|ENST00000478959||1),UPSTREAM(MODIFIER|||||RPLP0P2|processed_transcript|NON_CODING|ENST00000496593||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	47:2:0:0:0,0:0,0:45,47:0,0	131:1:0:0:7,7:0,0:123,124:0,0
11	62292733	.	A	G	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||120|AHNAK|protein_coding|CODING|ENST00000533365|4|1),INTRON(MODIFIER||||131|AHNAK|protein_coding|CODING|ENST00000530124|2|1),INTRON(MODIFIER||||149|AHNAK|protein_coding|CODING|ENST00000257247|4|1),SYNONYMOUS_CODING(LOW|SILENT|gaT/gaC|D3052|5890|AHNAK|protein_coding|CODING|ENST00000378024|5|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:2:0:0:36,39:1,1:0,0:0,0	115:4:0:0:103,110:0,1:8,8:0,0
11	62295549	rs1298288	C	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||120|AHNAK|protein_coding|CODING|ENST00000533365|4|1),INTRON(MODIFIER||||131|AHNAK|protein_coding|CODING|ENST00000530124|2|1),INTRON(MODIFIER||||149|AHNAK|protein_coding|CODING|ENST00000257247|4|1),NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|Gcc/Acc|A2114T|5890|AHNAK|protein_coding|CODING|ENST00000378024|5|1);RSPOS=62295549;dbSNPBuildID=87;SSR=0;SAO=0;VP=050100080801070503000100;GENEINFO=AHNAK:79026;WGT=1;VC=SNV;SLO;NSM;INT;VLD;G5A;G5;HD;GNO;OTHERKG;PH3	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:0:0:0:0,0:31,32:0,0:0,0	100:1:0:0:0,0:92,93:1,1:6,6
11	62907560	rs9665839	G	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||322|SLC22A24|protein_coding|CODING|ENST00000326192|1|1),INTRON(MODIFIER||||330|SLC22A24|protein_coding|CODING|ENST00000531535|1|1),INTRON(MODIFIER||||551|SLC22A24|protein_coding|CODING|ENST00000417740|1|1),INTRON(MODIFIER|||||SLC22A10|processed_transcript|CODING|ENST00000525620|1|1);RSPOS=62907560;dbSNPBuildID=119;SSR=0;SAO=0;VP=050000080005000002000100;GENEINFO=SLC22A24:283238;WGT=1;VC=SNV;INT;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:0:0:0:0,0:0,0:34,34:0,0	102:2:0:0:0,0:0,0:87,90:13,13
11	63747921	rs535064	T	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||69|COX8A|protein_coding|CODING|ENST00000314133||1),INTRON(MODIFIER|||||AP000721.4|processed_transcript|NON_CODING|ENST00000535431|1|1);RSPOS=63747921;RV;dbSNPBuildID=83;SSR=0;SAO=0;VP=050000000001040002000100;WGT=1;VC=SNV;VLD;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	46:0:0:0:0,0:1,1:0,0:45,45	115:4:0:0:0,0:7,8:0,0:104,110
11	63966454	.	A	G	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||236|STIP1|protein_coding|CODING|ENST00000543847||1),DOWNSTREAM(MODIFIER|||||STIP1|processed_transcript|CODING|ENST00000540501||1),DOWNSTREAM(MODIFIER|||||STIP1|processed_transcript|CODING|ENST00000544739||1),INTRON(MODIFIER||||519|STIP1|protein_coding|CODING|ENST00000538945|8|1),INTRON(MODIFIER||||543|STIP1|protein_coding|CODING|ENST00000305218|8|1),INTRON(MODIFIER||||590|STIP1|protein_coding|CODING|ENST00000358794|8|1),INTRON(MODIFIER|||||STIP1|nonsense_mediated_decay|CODING|ENST00000536973|3|1),INTRON(MODIFIER|||||STIP1|processed_transcript|CODING|ENST00000537479|4|1),INTRON(MODIFIER|||||STIP1|retained_intron|CODING|ENST00000538497|3|1),UPSTREAM(MODIFIER||||137|STIP1|protein_coding|CODING|ENST00000540887||1),UPSTREAM(MODIFIER|||||STIP1|retained_intron|CODING|ENST00000355603||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	45:0:0:0:45,46:0,0:0,0:0,0	109:6:0:0:95,97:0,0:8,13:0,0
11	64379371	.	A	C	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1642|NRXN2|protein_coding|CODING|ENST00000377559|19|1),INTRON(MODIFIER||||1705|NRXN2|protein_coding|CODING|ENST00000409571|21|1),INTRON(MODIFIER||||1712|NRXN2|protein_coding|CODING|ENST00000265459|22|1),INTRON(MODIFIER||||1712|NRXN2|protein_coding|CODING|ENST00000377551|21|1),INTRON(MODIFIER||||666|NRXN2|protein_coding|CODING|ENST00000301894|6|1),INTRON(MODIFIER|||||NRXN2|processed_transcript|CODING|ENST00000475737|2|1),INTRON(MODIFIER|||||NRXN2|retained_intron|CODING|ENST00000464307|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	43:0:0:0:42,42:1,1:0,0:0,0	94:5:0:0:73,76:15,16:1,2:0,0
11	64432230	.	G	A	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||291|NRXN2|protein_coding|CODING|ENST00000442300||1),INTRON(MODIFIER||||1642|NRXN2|protein_coding|CODING|ENST00000377559|8|1),INTRON(MODIFIER||||1705|NRXN2|protein_coding|CODING|ENST00000409571|8|1),INTRON(MODIFIER||||1712|NRXN2|protein_coding|CODING|ENST00000265459|9|1),INTRON(MODIFIER||||1712|NRXN2|protein_coding|CODING|ENST00000377551|8|1),UPSTREAM(MODIFIER|||||NRXN2|processed_transcript|CODING|ENST00000496291||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	44:1:0:0:0,0:0,0:43,44:0,0	108:7:0:0:5,9:0,0:96,99:0,0
11	65132807	.	C	A	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||RP11-867O8.5|antisense|NON_CODING|ENST00000533886||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:2:0:0:0,0:34,38:0,0:0,0	109:0:0:0:7,7:102,102:0,0:0,0
11	65240080	.	A	G	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	45:0:0:0:45,47:0,0:0,0:0,0	106:5:0:0:95,99:0,0:6,7:0,0
11	65492917	.	T	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=TT->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER||||164|RNASEH2C|protein_coding|CODING|ENST00000308418||1),UPSTREAM(MODIFIER||||247|RNASEH2C|protein_coding|CODING|ENST00000527610||1),UPSTREAM(MODIFIER||||81|RNASEH2C|protein_coding|CODING|ENST00000528220||1),UPSTREAM(MODIFIER|||||KRT8P26|processed_pseudogene|NON_CODING|ENST00000534154||1),UPSTREAM(MODIFIER|||||RNASEH2C|retained_intron|CODING|ENST00000530192||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	47:0:0:0:0,0:0,0:0,0:47,48	113:2:0:0:0,0:6,6:0,0:105,109
11	65562093	.	C	T	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||OVOL1|processed_transcript|CODING|ENST00000531907||1),DOWNSTREAM(MODIFIER|||||RP11-770G2.5|antisense|NON_CODING|ENST00000531155||1),NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|Cgc/Tgc|R135C|267|OVOL1|protein_coding|CODING|ENST00000335987|3|1),NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|Cgc/Tgc|R73C|205|OVOL1|protein_coding|CODING|ENST00000532448|2|1),UPSTREAM(MODIFIER|||||RP11-770G2.4|antisense|NON_CODING|ENST00000527453||1),UPSTREAM(MODIFIER|||||RP11-770G2.4|antisense|NON_CODING|ENST00000532454||1),UPSTREAM(MODIFIER|||||RP11-770G2.4|antisense|NON_CODING|ENST00000534178||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	45:0:0:0:0,0:43,43:2,2:0,0	115:2:0:0:0,0:104,106:0,0:9,9
11	65574383	rs201434606	C	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=65574383;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000000015000002000100;WGT=1;VC=SNV;OTH;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	28:0:15:0:0,0:28,28:0,0:0,0	47:0:46:0:4,4:43,43:0,0:0,0
11	65595969	.	G	A	.	PASS	NT=ref;QSS=24;QSS_NT=24;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||CFL1|processed_transcript|CODING|ENST00000525710|1|1),INTRON(MODIFIER|||||CFL1|processed_transcript|CODING|ENST00000527752|1|1),UPSTREAM(MODIFIER|||||CFL1|processed_transcript|CODING|ENST00000530157||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	48:0:0:0:0,0:0,0:48,49:0,0	89:0:0:0:9,9:0,0:80,80:0,0
11	65967543	.	A	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||105|PACS1|protein_coding|CODING|ENST00000533756|3|1),INTRON(MODIFIER||||165|PACS1|protein_coding|CODING|ENST00000527380|2|1),INTRON(MODIFIER||||963|PACS1|protein_coding|CODING|ENST00000320580|2|1),INTRON(MODIFIER|||||PACS1|retained_intron|CODING|ENST00000527224|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	46:0:0:0:44,44:1,1:1,1:0,0	99:0:0:0:93,94:0,0:6,6:0,0
11	66527679	.	G	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||14|C11orf80|protein_coding|CODING|ENST00000534325||1),DOWNSTREAM(MODIFIER|||||RP11-658F2.3|processed_pseudogene|NON_CODING|ENST00000528754||1),INTRON(MODIFIER||||128|C11orf80|protein_coding|CODING|ENST00000524551|2|1),INTRON(MODIFIER||||297|C11orf80|protein_coding|CODING|ENST00000525908|4|1),INTRON(MODIFIER||||460|C11orf80|protein_coding|CODING|ENST00000527634|2|1),INTRON(MODIFIER||||486|C11orf80|protein_coding|CODING|ENST00000346672|4|1),INTRON(MODIFIER||||486|C11orf80|protein_coding|CODING|ENST00000525449|3|1),INTRON(MODIFIER||||511|C11orf80|protein_coding|CODING|ENST00000540737|2|1),INTRON(MODIFIER||||512|C11orf80|protein_coding|CODING|ENST00000528340|2|1),INTRON(MODIFIER||||677|C11orf80|protein_coding|CODING|ENST00000360962|4|1),INTRON(MODIFIER|||||C11orf80|nonsense_mediated_decay|CODING|ENST00000531400|2|1),INTRON(MODIFIER|||||C11orf80|nonsense_mediated_decay|CODING|ENST00000532727|1|1),INTRON(MODIFIER|||||C11orf80|processed_transcript|CODING|ENST00000527368|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:0:0:0:0,0:0,0:39,40:0,0	92:1:0:0:7,8:0,0:84,84:0,0
11	67320909	.	C	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:0:0:0:0,0:31,31:0,0:0,0	92:0:0:0:0,0:84,84:1,1:7,7
11	67614554	.	G	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:1:0:0:0,0:0,0:32,33:0,0	129:0:0:0:7,7:0,0:122,124:0,0
11	68128245	.	T	C	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1615|LRP5|protein_coding|CODING|ENST00000294304|3|1),INTRON(MODIFIER|||||LRP5|nonsense_mediated_decay|CODING|ENST00000529993|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	55:1:0:0:0,0:1,1:0,0:53,54	125:2:0:0:0,0:7,8:0,0:116,118
11	68659519	.	T	C	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=TT->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=DOWNSTREAM(MODIFIER||||195|MRPL21|protein_coding|CODING|ENST00000567045||1),DOWNSTREAM(MODIFIER|||||MRPL21|nonsense_mediated_decay|CODING|ENST00000541265||1),DOWNSTREAM(MODIFIER|||||MRPL21|nonsense_mediated_decay|CODING|ENST00000544567||1),INTRON(MODIFIER||||120|MRPL21|protein_coding|CODING|ENST00000450904|6|1),INTRON(MODIFIER||||205|MRPL21|protein_coding|CODING|ENST00000362034|6|1),INTRON(MODIFIER|||||MRPL21|nonsense_mediated_decay|CODING|ENST00000541279|6|1),UTR_3_PRIME(MODIFIER|||||MRPL21|nonsense_mediated_decay|CODING|ENST00000565125|6|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	48:1:0:0:0,0:0,0:0,0:47,50	129:1:0:0:0,0:7,7:2,3:119,122
11	69436918	rs78322527	A	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=69436918;dbSNPBuildID=131;SSR=0;SAO=0;VP=050000000001040102000100;WGT=1;VC=SNV;VLD;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:8:0:0:25,34:0,0:0,0:0,0	73:13:0:0:51,70:8,8:1,1:0,0
11	69529909	.	G	A	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:0:0:0:0,0:0,0:39,40:0,0	79:2:0:0:6,8:0,0:71,80:0,0
11	70266956	.	T	G	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=TT->GT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=DOWNSTREAM(MODIFIER|||||CTTN|retained_intron|CODING|ENST00000525276||1),DOWNSTREAM(MODIFIER|||||CTTN|retained_intron|CODING|ENST00000532334||1),INTRON(MODIFIER||||314|CTTN|protein_coding|CODING|ENST00000538675|1|1),INTRON(MODIFIER||||50|CTTN|protein_coding|CODING|ENST00000527962|1|1),INTRON(MODIFIER||||513|CTTN|protein_coding|CODING|ENST00000346329|10|1),INTRON(MODIFIER||||550|CTTN|protein_coding|CODING|ENST00000301843|10|1),INTRON(MODIFIER||||634|CTTN|protein_coding|CODING|ENST00000376561|10|1),INTRON(MODIFIER||||75|CTTN|protein_coding|CODING|ENST00000498223|1|1),INTRON(MODIFIER|||||CTTN|retained_intron|CODING|ENST00000483662|1|1),UPSTREAM(MODIFIER|||||CTTN|nonsense_mediated_decay|CODING|ENST00000393747||1),UPSTREAM(MODIFIER|||||CTTN|retained_intron|CODING|ENST00000525852||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	46:1:0:0:0,0:0,0:1,2:44,44	123:6:0:0:0,0:1,1:21,25:95,97
11	70556193	.	C	T	.	PASS	NT=ref;QSS=27;QSS_NT=27;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1470|SHANK2|protein_coding|CODING|ENST00000423696|4|1),INTRON(MODIFIER||||1473|SHANK2|protein_coding|CODING|ENST00000294018|4|1),INTRON(MODIFIER||||1488|SHANK2|protein_coding|CODING|ENST00000433693|4|1),INTRON(MODIFIER||||1850|SHANK2|protein_coding|CODING|ENST00000338508|20|1),INTRON(MODIFIER|||||SHANK2|processed_transcript|CODING|ENST00000468619|4|1),INTRON(MODIFIER|||||SHANK2|processed_transcript|CODING|ENST00000470759|2|1),INTRON(MODIFIER|||||SHANK2|processed_transcript|CODING|ENST00000498519|2|1),UPSTREAM(MODIFIER|||||Y_RNA|misc_RNA|NON_CODING|ENST00000384467||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	54:0:0:0:0,0:54,54:0,0:0,0	114:3:0:0:0,0:105,108:0,0:6,6
11	70749495	rs201662766	G	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||89|SHANK2|protein_coding|CODING|ENST00000419988||1),INTRON(MODIFIER||||1850|SHANK2|protein_coding|CODING|ENST00000338508|16|1),INTRON(MODIFIER|||||SHANK2|processed_transcript|CODING|ENST00000460048|1|1);RSPOS=70749495;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000080005000002000100;WGT=1;VC=SNV;INT;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:1:0:0:0,0:0,0:30,31:0,0	109:1:0:0:5,5:0,0:103,104:0,0
11	71249434	.	A	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=SYNONYMOUS_CODING(LOW|SILENT|aaA/aaG|K111|187|KRTAP5-8|protein_coding|CODING|ENST00000398534|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	58:0:0:0:55,55:1,2:2,2:0,0	108:0:0:0:94,95:2,2:8,8:4,4
11	71308739	.	T	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->GT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=DOWNSTREAM(MODIFIER|||||OR7E87P|unprocessed_pseudogene|NON_CODING|ENST00000532397||1),INTRON(MODIFIER||||145|AP000867.1|protein_coding|CODING|ENST00000343767|4|1),INTRON(MODIFIER|||||KRTAP5-11|processed_transcript|CODING|ENST00000526239|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	47:0:0:0:0,0:0,0:0,1:47,47	122:0:0:0:0,0:0,0:11,12:111,112
11	71308765	.	T	A	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||OR7E87P|unprocessed_pseudogene|NON_CODING|ENST00000532397||1),INTRON(MODIFIER||||145|AP000867.1|protein_coding|CODING|ENST00000343767|4|1),INTRON(MODIFIER|||||KRTAP5-11|processed_transcript|CODING|ENST00000526239|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	45:0:0:0:0,0:0,0:1,1:44,44	127:0:0:0:10,13:0,0:0,0:117,117
11	71435787	rs199841760	A	T	.	PASS	NT=ref;QSS=23;QSS_NT=23;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||CTD-2313N18.2|processed_transcript|NON_CODING|ENST00000529093||1),INTRON(MODIFIER|||||CTD-2313N18.2|processed_transcript|NON_CODING|ENST00000524615|1|1),INTRON(MODIFIER|||||CTD-2313N18.2|transcribed_unprocessed_pseudogene|NON_CODING|ENST00000527856|1|1);RSPOS=71435787;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	45:0:0:0:44,45:0,0:1,1:0,2	112:1:0:0:97,97:0,0:0,0:14,41
11	71614505	.	G	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=EXON(MODIFIER|||||RP11-757C15.3|unprocessed_pseudogene|NON_CODING|ENST00000526217|1|1),INTRON(MODIFIER||||141|RP11-849H4.2|protein_coding|CODING|ENST00000532852|3|1),INTRON(MODIFIER||||206|RP11-849H4.2|protein_coding|CODING|ENST00000528511|4|1),UPSTREAM(MODIFIER|||||AP000719.1|miRNA|NON_CODING|ENST00000583110||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	67:1:0:0:0,1:1,1:65,66:0,0	161:0:0:0:8,12:0,0:153,155:0,0
11	72172627	.	A	T	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	45:2:0:0:43,45:0,0:0,1:0,0	102:1:0:0:91,92:1,1:0,0:9,9
11	72172964	.	C	G	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:1:0:0:0,0:37,38:0,0:0,0	126:1:0:0:0,0:117,119:8,8:0,0
11	72200204	.	G	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:1:0:0:0,0:0,0:29,30:0,0	85:1:0:0:0,0:0,0:75,76:9,9
11	76403587	.	G	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||GUCY2EP|transcribed_unprocessed_pseudogene|NON_CODING|ENST00000531117||1),INTRON(MODIFIER|||||RP11-672A2.3|lincRNA|NON_CODING|ENST00000533588|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:0:0:0:0,0:0,0:30,31:1,1	86:0:0:0:2,2:8,8:76,80:0,0
11	78371880	.	T	G	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||2769|ODZ4|protein_coding|CODING|ENST00000278550|33|1),INTRON(MODIFIER||||951|ODZ4|protein_coding|CODING|ENST00000530738|5|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:1:0:0:0,0:0,0:0,0:31,32	108:0:0:0:0,0:0,0:11,11:97,98
11	78946354	rs151024011	C	T	.	PASS	NT=ref;QSS=26;QSS_NT=26;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||2769|ODZ4|protein_coding|CODING|ENST00000278550|2|1),INTRON(MODIFIER|||||ODZ4|processed_transcript|CODING|ENST00000528688|2|1),INTRON(MODIFIER|||||ODZ4|processed_transcript|CODING|ENST00000531583|2|1),INTRON(MODIFIER|||||ODZ4|retained_intron|CODING|ENST00000532654|1|1);RSPOS=78946354;GMAF=0.006;dbSNPBuildID=134;SSR=0;SAO=0;VP=050000080005000014000100;GENEINFO=ODZ4:26011;WGT=1;VC=SNV;INT;ASP;KGPhase1;KGPROD	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	52:1:0:0:0,0:51,52:0,0:0,0	96:1:0:0:0,0:87,88:0,1:8,8
11	79394637	.	G	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:0:0:0:0,0:0,0:35,35:0,0	104:1:0:0:4,4:0,0:99,100:0,0
11	79590816	.	C	T	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:1:0:0:0,0:30,31:0,0:0,0	117:2:0:0:1,1:95,97:1,1:18,18
11	80106006	.	C	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:0:0:0:0,0:32,32:0,0:0,0	75:1:0:0:0,0:68,69:0,0:6,6
11	80248348	.	A	G	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	41:0:0:0:41,41:0,0:0,0:0,0	96:4:0:0:86,90:0,0:6,6:0,0
11	80750618	.	A	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:0:0:0:35,35:0,0:0,0:0,0	98:1:0:0:86,87:1,2:0,0:10,10
11	83027754	.	C	A	.	PASS	NT=ref;QSS=37;QSS_NT=37;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-727A23.10|processed_transcript|NON_CODING|ENST00000530045|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	85:8:0:0:0,0:77,89:0,0:0,1	177:28:0:0:8,9:140,178:0,2:1,1
11	84047452	.	A	C	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||852|DLG2|protein_coding|CODING|ENST00000532653|2|1),INTRON(MODIFIER||||866|DLG2|protein_coding|CODING|ENST00000524982|2|1),INTRON(MODIFIER||||870|DLG2|protein_coding|CODING|ENST00000398309|2|1),INTRON(MODIFIER||||975|DLG2|protein_coding|CODING|ENST00000376104|7|1),INTRON(MODIFIER||||975|DLG2|protein_coding|CODING|ENST00000543673|5|1),INTRON(MODIFIER|||||DLG2|processed_transcript|CODING|ENST00000527466|1|1),INTRON(MODIFIER|||||DLG2|retained_intron|CODING|ENST00000529111|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	53:0:0:0:52,52:1,1:0,0:0,0	123:0:0:0:116,116:7,7:0,0:0,0
11	84141799	.	G	A	.	PASS	NT=ref;QSS=27;QSS_NT=27;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||852|DLG2|protein_coding|CODING|ENST00000532653|2|1),INTRON(MODIFIER||||866|DLG2|protein_coding|CODING|ENST00000524982|2|1),INTRON(MODIFIER||||870|DLG2|protein_coding|CODING|ENST00000398309|2|1),INTRON(MODIFIER||||975|DLG2|protein_coding|CODING|ENST00000376104|7|1),INTRON(MODIFIER||||975|DLG2|protein_coding|CODING|ENST00000543673|5|1),INTRON(MODIFIER|||||DLG2|processed_transcript|CODING|ENST00000527466|1|1),INTRON(MODIFIER|||||DLG2|retained_intron|CODING|ENST00000529111|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	54:0:0:0:0,0:0,0:54,54:0,0	97:1:0:0:9,9:0,0:87,89:0,0
11	84370372	.	A	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||73|DLG2|protein_coding|CODING|ENST00000527088|2|1),INTRON(MODIFIER||||852|DLG2|protein_coding|CODING|ENST00000532653|1|1),INTRON(MODIFIER||||866|DLG2|protein_coding|CODING|ENST00000524982|1|1),INTRON(MODIFIER||||870|DLG2|protein_coding|CODING|ENST00000398309|1|1),INTRON(MODIFIER||||975|DLG2|protein_coding|CODING|ENST00000376104|6|1),INTRON(MODIFIER||||975|DLG2|protein_coding|CODING|ENST00000543673|4|1),INTRON(MODIFIER|||||DLG2|retained_intron|CODING|ENST00000529111|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:0:0:0:31,31:0,0:0,0:0,0	93:5:0:0:84,89:0,0:4,4:0,1
11	87858776	.	G	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||211|RAB38|protein_coding|CODING|ENST00000243662|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:1:0:0:0,0:0,0:29,30:0,0	99:2:0:0:6,6:0,0:91,93:0,0
11	87916200	.	G	A	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:0:0:0:0,0:0,0:40,40:0,0	84:1:0:0:7,7:0,0:76,77:0,0
11	88109688	rs111363249	G	T	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=88109688;dbSNPBuildID=132;SSR=0;SAO=0;VP=050100000005000102000100;WGT=1;VC=SNV;SLO;ASP;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:0:0:0:0,0:0,0:39,39:0,0	106:2:0:0:0,0:0,0:99,100:5,7
11	88776201	.	G	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1180|GRM5|protein_coding|CODING|ENST00000305432|1|1),INTRON(MODIFIER||||1180|GRM5|protein_coding|CODING|ENST00000455756|2|1),INTRON(MODIFIER||||1212|GRM5|protein_coding|CODING|ENST00000305447|1|1),INTRON(MODIFIER||||1212|GRM5|protein_coding|CODING|ENST00000418177|2|1),INTRON(MODIFIER||||298|GRM5|protein_coding|CODING|ENST00000393294|2|1),INTRON(MODIFIER||||942|GRM5|protein_coding|CODING|ENST00000393297|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:0:0:0:0,0:0,0:32,32:0,0	113:0:0:0:5,5:0,0:108,108:0,0
11	88776996	.	A	G	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1180|GRM5|protein_coding|CODING|ENST00000305432|1|1),INTRON(MODIFIER||||1180|GRM5|protein_coding|CODING|ENST00000455756|2|1),INTRON(MODIFIER||||1212|GRM5|protein_coding|CODING|ENST00000305447|1|1),INTRON(MODIFIER||||1212|GRM5|protein_coding|CODING|ENST00000418177|2|1),INTRON(MODIFIER||||298|GRM5|protein_coding|CODING|ENST00000393294|2|1),INTRON(MODIFIER||||942|GRM5|protein_coding|CODING|ENST00000393297|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:0:0:0:38,38:0,0:0,0:0,0	118:2:0:0:111,113:0,0:5,5:0,0
11	89084813	.	G	A	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||231|NOX4|protein_coding|CODING|ENST00000531342|4|1),INTRON(MODIFIER||||271|NOX4|protein_coding|CODING|ENST00000375979|4|1),INTRON(MODIFIER||||342|NOX4|protein_coding|CODING|ENST00000525196|8|1),INTRON(MODIFIER||||391|NOX4|protein_coding|CODING|ENST00000527626|9|1),INTRON(MODIFIER||||514|NOX4|protein_coding|CODING|ENST00000532825|13|1),INTRON(MODIFIER||||538|NOX4|protein_coding|CODING|ENST00000534731|13|1),INTRON(MODIFIER||||553|NOX4|protein_coding|CODING|ENST00000528341|12|1),INTRON(MODIFIER||||554|NOX4|protein_coding|CODING|ENST00000343727|13|1),INTRON(MODIFIER||||554|NOX4|protein_coding|CODING|ENST00000424319|13|1),INTRON(MODIFIER||||554|NOX4|protein_coding|CODING|ENST00000527956|14|1),INTRON(MODIFIER||||554|NOX4|protein_coding|CODING|ENST00000535633|13|1),INTRON(MODIFIER||||554|NOX4|protein_coding|CODING|ENST00000542487|16|1),INTRON(MODIFIER||||578|NOX4|protein_coding|CODING|ENST00000263317|13|1),INTRON(MODIFIER||||599|NOX4|protein_coding|CODING|ENST00000413594|13|1),INTRON(MODIFIER|||||NOX4|nonsense_mediated_decay|CODING|ENST00000529343|10|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	41:0:0:0:0,0:0,0:41,41:0,0	112:1:0:0:10,10:0,0:101,103:0,0
11	89109698	.	C	A	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||231|NOX4|protein_coding|CODING|ENST00000531342|2|1),INTRON(MODIFIER||||271|NOX4|protein_coding|CODING|ENST00000375979|2|1),INTRON(MODIFIER||||342|NOX4|protein_coding|CODING|ENST00000525196|8|1),INTRON(MODIFIER||||391|NOX4|protein_coding|CODING|ENST00000527626|7|1),INTRON(MODIFIER||||514|NOX4|protein_coding|CODING|ENST00000532825|11|1),INTRON(MODIFIER||||538|NOX4|protein_coding|CODING|ENST00000534731|11|1),INTRON(MODIFIER||||553|NOX4|protein_coding|CODING|ENST00000528341|10|1),INTRON(MODIFIER||||554|NOX4|protein_coding|CODING|ENST00000343727|11|1),INTRON(MODIFIER||||554|NOX4|protein_coding|CODING|ENST00000424319|11|1),INTRON(MODIFIER||||554|NOX4|protein_coding|CODING|ENST00000527956|12|1),INTRON(MODIFIER||||554|NOX4|protein_coding|CODING|ENST00000535633|11|1),INTRON(MODIFIER||||554|NOX4|protein_coding|CODING|ENST00000542487|14|1),INTRON(MODIFIER||||578|NOX4|protein_coding|CODING|ENST00000263317|11|1),INTRON(MODIFIER||||599|NOX4|protein_coding|CODING|ENST00000413594|11|1),INTRON(MODIFIER|||||NOX4|nonsense_mediated_decay|CODING|ENST00000529343|8|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:2:0:0:0,0:37,39:0,0:0,0	104:0:0:0:12,12:92,93:0,0:0,0
11	89367624	rs191573535	C	T	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||FOLH1B|processed_transcript|NON_CODING|ENST00000526379||1),UPSTREAM(MODIFIER|||||FOLH1B|processed_transcript|NON_CODING|ENST00000531315||1),UPSTREAM(MODIFIER|||||FOLH1B|processed_transcript|NON_CODING|ENST00000532352||1),UPSTREAM(MODIFIER|||||FOLH1B|processed_transcript|NON_CODING|ENST00000533785||1),UPSTREAM(MODIFIER|||||FOLH1B|transcribed_unprocessed_pseudogene|NON_CODING|ENST00000529567||1);RSPOS=89367624;GMAF=0.0014;dbSNPBuildID=135;SSR=0;SAO=0;VP=050000000005000014000100;WGT=1;VC=SNV;ASP;KGPhase1;KGPROD	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:0:0:0:0,0:37,37:0,0:0,0	106:1:0:0:1,1:97,99:0,0:7,7
11	89812320	.	C	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||RP11-716D19.1|processed_pseudogene|NON_CODING|ENST00000527814||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:0:0:0:0,0:36,37:0,0:0,0	110:0:0:0:0,0:105,107:0,0:5,5
11	90358713	.	C	A	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-660M18.2|lincRNA|NON_CODING|ENST00000561596|3|1),INTRON(MODIFIER|||||RP11-660M18.2|lincRNA|NON_CODING|ENST00000562245|3|1),INTRON(MODIFIER|||||RP11-660M18.2|lincRNA|NON_CODING|ENST00000562678|2|1),INTRON(MODIFIER|||||RP11-660M18.2|lincRNA|NON_CODING|ENST00000563681|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:0:0:0:0,0:33,34:0,0:0,0	112:1:0:0:16,16:95,96:0,0:0,0
11	90416660	.	T	G	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-660M18.2|lincRNA|NON_CODING|ENST00000561596|3|1),INTRON(MODIFIER|||||RP11-660M18.2|lincRNA|NON_CODING|ENST00000562245|3|1),INTRON(MODIFIER|||||RP11-660M18.2|lincRNA|NON_CODING|ENST00000562678|2|1),INTRON(MODIFIER|||||RP11-660M18.2|lincRNA|NON_CODING|ENST00000563681|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:0:0:0:0,0:0,0:0,0:38,38	102:5:0:0:0,0:0,1:10,10:87,92
11	90530844	.	A	G	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-660M18.2|lincRNA|NON_CODING|ENST00000561596|3|1),INTRON(MODIFIER|||||RP11-660M18.2|lincRNA|NON_CODING|ENST00000562245|3|1),INTRON(MODIFIER|||||RP11-660M18.2|lincRNA|NON_CODING|ENST00000562678|2|1),INTRON(MODIFIER|||||RP11-660M18.2|lincRNA|NON_CODING|ENST00000563681|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:0:0:0:37,37:1,1:0,0:0,0	98:0:0:0:91,91:0,0:7,7:0,0
11	90789323	.	G	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	28:1:0:0:0,0:0,0:27,28:0,0	113:1:0:0:9,9:0,0:102,104:1,1
11	91517171	.	C	G	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:0:0:0:0,0:36,36:0,0:0,0	132:1:0:0:0,1:124,124:7,7:0,0
11	91890794	.	A	G	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||RPL7AP57|processed_pseudogene|NON_CODING|ENST00000497708||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	49:3:0:0:45,49:1,1:0,2:0,0	141:14:0:0:114,126:2,5:10,14:1,1
11	92140097	.	G	A	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1254|FAT3|protein_coding|CODING|ENST00000541502|1|1),INTRON(MODIFIER||||4439|FAT3|protein_coding|CODING|ENST00000525166|1|1),INTRON(MODIFIER||||4557|FAT3|protein_coding|CODING|ENST00000409404|1|1),INTRON(MODIFIER||||4589|FAT3|protein_coding|CODING|ENST00000298047|1|1),INTRON(MODIFIER|||||FAT3|processed_transcript|CODING|ENST00000528921|1|1),INTRON(MODIFIER|||||RP11-675M1.2|antisense|NON_CODING|ENST00000531176|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	41:0:0:0:0,0:0,0:41,41:0,0	112:1:0:0:12,12:0,0:99,100:0,0
11	92892743	.	C	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||279|SLC36A4|protein_coding|CODING|ENST00000534116|6|1),INTRON(MODIFIER||||369|SLC36A4|protein_coding|CODING|ENST00000529184|9|1),INTRON(MODIFIER||||504|SLC36A4|protein_coding|CODING|ENST00000326402|9|1),INTRON(MODIFIER|||||SLC36A4|retained_intron|CODING|ENST00000526735|2|1),UPSTREAM(MODIFIER|||||SLC36A4|retained_intron|CODING|ENST00000527503||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:0:0:0:0,0:31,31:0,0:0,0	110:1:0:0:0,0:100,101:0,0:9,9
11	93662262	rs10765646	G	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=93662262;dbSNPBuildID=120;SSR=0;SAO=0;VP=050000000001040102000100;WGT=1;VC=SNV;VLD;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	19:0:0:0:0,1:0,0:19,19:0,0	56:0:0:0:9,14:0,0:47,51:0,0
11	94104887	.	G	T	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	49:1:0:0:0,0:0,0:48,49:0,0	121:2:0:0:0,0:0,0:113,114:6,9
11	94549359	.	G	A	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||543|AMOTL1|protein_coding|CODING|ENST00000317837|3|1),INTRON(MODIFIER||||906|AMOTL1|protein_coding|CODING|ENST00000317829|2|1),INTRON(MODIFIER||||956|AMOTL1|protein_coding|CODING|ENST00000433060|3|1),UPSTREAM(MODIFIER|||||AMOTL1|processed_transcript|CODING|ENST00000539727||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:1:0:0:0,0:0,0:36,37:0,0	96:2:0:0:7,7:0,1:87,88:0,0
11	94701169	.	T	C	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||CWC15|retained_intron|NON_CODING|ENST00000539856||1),DOWNSTREAM(MODIFIER|||||CWC15|retained_intron|NON_CODING|ENST00000542165||1),DOWNSTREAM(MODIFIER|||||CWC15|retained_intron|NON_CODING|ENST00000542907||1),INTRON(MODIFIER|||||CWC15|processed_transcript|NON_CODING|ENST00000279839|5|1),INTRON(MODIFIER|||||CWC15|processed_transcript|NON_CODING|ENST00000540722|1|1),INTRON(MODIFIER|||||CWC15|processed_transcript|NON_CODING|ENST00000545018|5|1),INTRON(MODIFIER|||||CWC15|retained_intron|NON_CODING|ENST00000545971|4|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	41:0:0:0:0,0:0,0:0,0:41,41	112:1:0:0:0,0:6,7:0,0:105,105
11	95653062	.	A	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||MTMR2|processed_transcript|CODING|ENST00000485988||1),INTRON(MODIFIER||||571|MTMR2|protein_coding|CODING|ENST00000352297|1|1),INTRON(MODIFIER||||571|MTMR2|protein_coding|CODING|ENST00000393223|1|1),INTRON(MODIFIER||||571|MTMR2|protein_coding|CODING|ENST00000409459|1|1),INTRON(MODIFIER||||643|MTMR2|protein_coding|CODING|ENST00000346299|1|1),INTRON(MODIFIER|||||MTMR2|processed_transcript|CODING|ENST00000469574|1|1),INTRON(MODIFIER|||||MTMR2|processed_transcript|CODING|ENST00000470011|2|1),INTRON(MODIFIER|||||MTMR2|processed_transcript|CODING|ENST00000470293|1|1),INTRON(MODIFIER|||||MTMR2|processed_transcript|CODING|ENST00000481642|1|1),INTRON(MODIFIER|||||MTMR2|processed_transcript|CODING|ENST00000484818|1|1),INTRON(MODIFIER|||||MTMR2|processed_transcript|CODING|ENST00000485740|1|1),INTRON(MODIFIER|||||MTMR2|processed_transcript|CODING|ENST00000495134|1|1),INTRON(MODIFIER|||||MTMR2|processed_transcript|CODING|ENST00000497683|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:1:0:0:28,29:0,0:0,0:0,0	105:1:0:0:95,96:0,0:9,9:0,0
11	96948202	.	A	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	52:0:0:0:52,53:0,0:0,2:0,0	122:0:0:0:109,117:0,0:13,18:0,0
11	97337537	.	C	A	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:0:0:0:0,0:36,36:0,0:0,0	93:1:0:0:4,4:88,89:0,0:0,0
11	97418828	.	T	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	27:0:0:0:0,0:0,1:0,0:27,27	87:1:0:0:0,0:1,1:6,6:79,80
11	97465814	.	C	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	26:1:4:0:0,0:25,26:0,1:0,0	116:4:20:0:1,2:94,105:0,0:17,26
11	97821701	.	T	C	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	41:1:0:0:0,0:0,0:0,0:40,41	130:1:0:0:0,0:18,18:0,1:111,111
11	98291147	.	C	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:0:0:0:0,0:33,33:0,0:0,0	97:1:0:0:4,4:92,93:0,0:0,0
11	98377390	.	A	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:1:0:0:33,34:0,0:0,0:0,0	116:4:1:0:103,106:0,0:0,0:9,10
11	98786111	.	G	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:0:0:0:0,0:0,0:31,31:0,0	91:0:0:0:0,0:0,0:83,83:8,8
11	99027429	.	C	T	.	PASS	NT=ref;QSS=26;QSS_NT=26;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1100|CNTN5|protein_coding|CODING|ENST00000524871|1|1),INTRON(MODIFIER||||1100|CNTN5|protein_coding|CODING|ENST00000528682|1|1),INTRON(MODIFIER||||911|CNTN5|protein_coding|CODING|ENST00000527185|1|1),INTRON(MODIFIER|||||CNTN5|retained_intron|CODING|ENST00000528727|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	52:0:0:0:0,0:52,52:0,0:0,0	124:2:0:0:0,0:108,110:0,0:14,15
11	99027430	.	C	A	.	PASS	NT=ref;QSS=25;QSS_NT=25;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1100|CNTN5|protein_coding|CODING|ENST00000524871|1|1),INTRON(MODIFIER||||1100|CNTN5|protein_coding|CODING|ENST00000528682|1|1),INTRON(MODIFIER||||911|CNTN5|protein_coding|CODING|ENST00000527185|1|1),INTRON(MODIFIER|||||CNTN5|retained_intron|CODING|ENST00000528727|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	50:0:0:0:0,0:50,50:0,0:0,0	123:2:0:0:14,15:107,109:0,0:0,0
11	99338909	.	G	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1100|CNTN5|protein_coding|CODING|ENST00000524871|2|1),INTRON(MODIFIER||||1100|CNTN5|protein_coding|CODING|ENST00000528682|1|1),INTRON(MODIFIER||||911|CNTN5|protein_coding|CODING|ENST00000527185|2|1),INTRON(MODIFIER|||||CNTN5|retained_intron|CODING|ENST00000528727|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:0:0:0:0,0:0,0:31,31:0,0	121:2:0:0:0,0:5,5:113,115:1,1
11	99502782	.	G	T	.	PASS	NT=ref;QSS=24;QSS_NT=24;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1026|CNTN5|protein_coding|CODING|ENST00000418526|1|1),INTRON(MODIFIER||||1100|CNTN5|protein_coding|CODING|ENST00000279463|1|1),INTRON(MODIFIER||||1100|CNTN5|protein_coding|CODING|ENST00000524871|3|1),INTRON(MODIFIER||||1100|CNTN5|protein_coding|CODING|ENST00000528682|2|1),INTRON(MODIFIER||||911|CNTN5|protein_coding|CODING|ENST00000527185|3|1),INTRON(MODIFIER|||||CNTN5|retained_intron|CODING|ENST00000528727|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	51:0:0:0:0,0:0,0:51,51:0,0	124:1:0:0:0,0:0,1:118,118:5,5
11	99513132	.	T	C	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1026|CNTN5|protein_coding|CODING|ENST00000418526|1|1),INTRON(MODIFIER||||1100|CNTN5|protein_coding|CODING|ENST00000279463|1|1),INTRON(MODIFIER||||1100|CNTN5|protein_coding|CODING|ENST00000524871|3|1),INTRON(MODIFIER||||1100|CNTN5|protein_coding|CODING|ENST00000528682|2|1),INTRON(MODIFIER||||911|CNTN5|protein_coding|CODING|ENST00000527185|3|1),INTRON(MODIFIER|||||CNTN5|retained_intron|CODING|ENST00000528727|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:0:0:0:0,0:0,0:0,0:34,34	97:0:0:0:0,0:5,5:0,0:92,93
11	99601767	rs193268157	A	C	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1026|CNTN5|protein_coding|CODING|ENST00000418526|1|1),INTRON(MODIFIER||||1100|CNTN5|protein_coding|CODING|ENST00000279463|1|1),INTRON(MODIFIER||||1100|CNTN5|protein_coding|CODING|ENST00000524871|3|1),INTRON(MODIFIER||||1100|CNTN5|protein_coding|CODING|ENST00000528682|2|1),INTRON(MODIFIER||||911|CNTN5|protein_coding|CODING|ENST00000527185|3|1),INTRON(MODIFIER|||||CNTN5|retained_intron|CODING|ENST00000528727|3|1);RSPOS=99601767;GMAF=0.0005;dbSNPBuildID=135;SSR=0;SAO=0;VP=050000080005000014000100;GENEINFO=CNTN5:53942;WGT=1;VC=SNV;INT;ASP;KGPhase1;KGPROD	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:0:0:0:38,39:0,0:0,0:0,0	108:1:0:0:99,100:8,8:0,0:0,0
11	100201047	.	A	G	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1026|CNTN5|protein_coding|CODING|ENST00000418526|18|1),INTRON(MODIFIER||||1100|CNTN5|protein_coding|CODING|ENST00000279463|19|1),INTRON(MODIFIER||||1100|CNTN5|protein_coding|CODING|ENST00000524871|21|1),INTRON(MODIFIER||||1100|CNTN5|protein_coding|CODING|ENST00000528682|20|1),INTRON(MODIFIER|||||CNTN5|processed_transcript|CODING|ENST00000524560|7|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:0:0:0:38,38:0,0:0,0:0,0	116:2:0:0:108,109:0,0:6,7:0,0
11	100249221	.	C	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:0:0:0:0,0:33,33:0,0:0,0	123:0:0:0:1,1:115,115:0,0:7,7
11	101089764	.	G	A	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	43:1:0:0:0,1:0,0:42,42:0,0	128:2:0:0:6,12:0,1:120,120:0,0
11	102686911	rs138122761	G	A	.	PASS	NT=ref;QSS=26;QSS_NT=26;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||WTAPP1|processed_transcript|NON_CODING|ENST00000371455|3|1),INTRON(MODIFIER|||||WTAPP1|processed_transcript|NON_CODING|ENST00000525739|4|1),INTRON(MODIFIER|||||WTAPP1|processed_transcript|NON_CODING|ENST00000544704|2|1);RSPOS=102686911;GMAF=0.0201;dbSNPBuildID=134;SSR=0;SAO=0;VP=050000080005000014000100;GENEINFO=LOC100288077:100288077;WGT=1;VC=SNV;INT;ASP;KGPhase1;KGPROD	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	52:0:0:0:0,0:0,0:51,51:1,1	101:0:0:0:12,12:0,0:89,89:0,0
11	102982566	.	G	A	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||4307|DYNC2H1|protein_coding|CODING|ENST00000375735|1|1),INTRON(MODIFIER||||4314|DYNC2H1|protein_coding|CODING|ENST00000398093|1|1),INTRON(MODIFIER||||920|DYNC2H1|protein_coding|CODING|ENST00000334267|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:0:0:0:0,0:0,0:37,37:0,0	104:0:0:0:8,8:0,0:96,96:0,0
11	103388201	.	G	C	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:0:0:0:0,0:0,0:40,40:0,0	120:1:0:0:0,0:7,7:112,113:0,0
11	103952865	rs5027114	C	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||364|PDGFD|protein_coding|CODING|ENST00000302251|1|1),INTRON(MODIFIER||||370|PDGFD|protein_coding|CODING|ENST00000393158|1|1);RSPOS=103952865;dbSNPBuildID=113;SSR=0;SAO=0;VP=05010008000104010e000100;GENEINFO=PDGFD:80310;WGT=1;VC=SNV;SLO;INT;VLD;GNO;KGPilot123;KGPROD;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	13:0:0:0:0,0:13,13:0,0:0,0	67:0:0:0:0,0:52,52:0,0:15,15
11	104065747	.	T	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	42:2:0:0:0,0:1,1:1,1:38,50	74:2:0:0:1,1:7,10:0,0:64,82
11	104302593	.	T	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	27:0:0:0:0,0:0,0:0,0:27,28	125:2:0:0:0,0:14,14:0,0:109,111
11	104396746	.	A	C	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-886D15.1|lincRNA|NON_CODING|ENST00000536529|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:0:0:0:40,40:0,0:0,0:0,0	111:2:0:0:101,103:8,8:0,0:0,0
11	104973453	.	A	G	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER||||110|CARD17|protein_coding|CODING|ENST00000375707||1),UPSTREAM(MODIFIER||||88|CASP1|protein_coding|CODING|ENST00000415981||1),UPSTREAM(MODIFIER||||97|CARD16|protein_coding|CODING|ENST00000525374||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:0:0:0:38,39:0,0:0,0:0,0	113:0:0:0:97,97:0,0:16,16:0,0
11	105831595	.	G	A	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||884|GRIA4|protein_coding|CODING|ENST00000393127|14|1),INTRON(MODIFIER||||884|GRIA4|protein_coding|CODING|ENST00000525187|13|1),INTRON(MODIFIER||||902|GRIA4|protein_coding|CODING|ENST00000282499|14|1),INTRON(MODIFIER||||902|GRIA4|protein_coding|CODING|ENST00000530497|13|1),INTRON(MODIFIER|||||GRIA4|processed_transcript|CODING|ENST00000533094|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:1:0:0:0,0:0,0:33,34:0,0	90:4:0:0:9,9:0,0:76,81:1,1
11	105929473	.	T	A	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=EXON(MODIFIER|||||KBTBD3|retained_intron|CODING|ENST00000528483|2|1),INTRON(MODIFIER||||32|KBTBD3|protein_coding|CODING|ENST00000532662|1|1),INTRON(MODIFIER||||533|KBTBD3|protein_coding|CODING|ENST00000534815|1|1),INTRON(MODIFIER||||612|KBTBD3|protein_coding|CODING|ENST00000526793|2|1),INTRON(MODIFIER||||612|KBTBD3|protein_coding|CODING|ENST00000531837|3|1),INTRON(MODIFIER|||||KBTBD3|processed_transcript|CODING|ENST00000531482|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	43:2:0:0:0,0:0,0:0,0:41,43	125:0:0:0:8,8:0,0:0,0:117,117
11	106065984	rs151233189	G	A	.	PASS	NT=ref;QSS=29;QSS_NT=29;SGT=GG->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=106065984;GMAF=0.0444;dbSNPBuildID=134;SSR=0;SAO=0;VP=050000000005000014000100;WGT=1;VC=SNV;ASP;KGPhase1;KGPROD	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	67:1:0:0:0,1:0,0:66,67:0,0	207:4:0:0:10,11:0,0:193,200:0,0
11	106228562	.	G	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:0:0:0:0,0:0,0:29,29:0,0	117:0:0:0:7,7:1,1:108,108:1,1
11	106377023	.	C	G	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:0:0:0:0,0:39,39:0,0:0,0	125:1:0:0:1,1:112,114:11,11:0,0
11	108359001	.	T	C	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=TT->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER||||409|KDELC2|protein_coding|CODING|ENST00000375648|1|1),INTRON(MODIFIER||||451|KDELC2|protein_coding|CODING|ENST00000434945|1|1),INTRON(MODIFIER||||507|KDELC2|protein_coding|CODING|ENST00000323468|2|1),INTRON(MODIFIER|||||KDELC2|nonsense_mediated_decay|CODING|ENST00000530529|1|1),UPSTREAM(MODIFIER|||||KDELC2|processed_transcript|CODING|ENST00000524787||1),UPSTREAM(MODIFIER|||||KDELC2|processed_transcript|CODING|ENST00000532730||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	50:1:0:0:0,0:0,0:0,0:49,50	129:2:0:0:0,0:6,6:0,0:121,123
11	108634020	.	A	G	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||835|DDX10|protein_coding|CODING|ENST00000526794|13|1),INTRON(MODIFIER||||875|DDX10|protein_coding|CODING|ENST00000322536|13|1),UPSTREAM(MODIFIER|||||DDX10|processed_transcript|CODING|ENST00000534439||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	42:0:0:0:42,42:0,0:0,0:0,0	106:1:0:0:98,98:0,1:7,7:0,0
11	109790108	.	C	G	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	41:0:0:0:0,0:41,41:0,0:0,0	107:2:0:0:0,0:100,102:5,5:0,0
11	110405641	.	C	G	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	44:0:0:0:0,0:44,44:0,0:0,0	91:1:0:0:0,0:85,86:5,5:0,0
11	110490358	rs36064443	A	G	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1155|ARHGAP20|protein_coding|CODING|ENST00000527598|4|1),INTRON(MODIFIER||||1155|ARHGAP20|protein_coding|CODING|ENST00000528829|4|1),INTRON(MODIFIER||||1165|ARHGAP20|protein_coding|CODING|ENST00000357139|4|1),INTRON(MODIFIER||||1165|ARHGAP20|protein_coding|CODING|ENST00000533353|5|1),INTRON(MODIFIER||||1168|ARHGAP20|protein_coding|CODING|ENST00000524756|4|1),INTRON(MODIFIER||||1191|ARHGAP20|protein_coding|CODING|ENST00000260283|5|1);RSPOS=110490358;GMAF=0.0755;dbSNPBuildID=126;SSR=0;SAO=0;VP=050000080001040116000100;GENEINFO=ARHGAP20:57569;WGT=1;VC=SNV;INT;VLD;GNO;KGPhase1;KGPROD;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:0:0:0:38,38:0,0:0,0:0,0	115:3:0:0:105,112:0,0:7,9:0,0
11	110810010	.	G	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	28:0:0:0:0,0:0,0:28,28:0,0	99:0:0:0:0,0:0,0:94,95:5,5
11	110810274	.	G	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:0:0:0:0,0:0,0:40,40:0,0	104:0:0:0:4,4:0,0:100,100:0,0
11	111201518	.	C	A	.	PASS	NT=ref;QSS=24;QSS_NT=24;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	47:0:0:0:0,0:47,47:0,0:0,0	110:2:0:0:9,9:99,102:0,0:0,0
11	112194780	.	G	A	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-356J5.12|processed_transcript|NON_CODING|ENST00000504610|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	45:1:0:0:0,0:0,0:43,44:1,1	127:0:0:0:16,16:0,0:111,111:0,0
11	113676817	.	A	G	.	PASS	NT=ref;QSS=23;QSS_NT=23;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1045|USP28|protein_coding|CODING|ENST00000260188|18|1),INTRON(MODIFIER||||1077|USP28|protein_coding|CODING|ENST00000003302|19|1),INTRON(MODIFIER||||753|USP28|protein_coding|CODING|ENST00000544967|9|1),INTRON(MODIFIER||||920|USP28|protein_coding|CODING|ENST00000545540|16|1),INTRON(MODIFIER|||||USP28|nonsense_mediated_decay|CODING|ENST00000540438|17|1),UPSTREAM(MODIFIER|||||USP28|retained_intron|CODING|ENST00000544272||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	45:0:0:0:45,45:0,0:0,0:0,0	107:2:0:0:95,97:0,0:10,10:0,0
11	114577940	.	A	C	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||559|NXPE2|protein_coding|CODING|ENST00000389586||1),INTRON(MODIFIER||||347|NXPE2|protein_coding|CODING|ENST00000375475|4|1),INTRON(MODIFIER|||||NXPE2|processed_transcript|CODING|ENST00000541074|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	54:0:0:0:53,54:1,1:0,0:0,0	105:0:0:0:98,98:7,7:0,0:0,0
11	114708995	.	T	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:0:0:0:0,0:0,0:0,0:30,30	136:1:0:0:1,1:13,14:0,0:121,124
11	115071453	.	G	T	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||414|CADM1|protein_coding|CODING|ENST00000542447|7|1),INTRON(MODIFIER||||442|CADM1|protein_coding|CODING|ENST00000452722|8|1),INTRON(MODIFIER||||443|CADM1|protein_coding|CODING|ENST00000536727|7|1),INTRON(MODIFIER||||453|CADM1|protein_coding|CODING|ENST00000537058|8|1),INTRON(MODIFIER||||471|CADM1|protein_coding|CODING|ENST00000331581|8|1),INTRON(MODIFIER|||||CADM1|processed_transcript|CODING|ENST00000441886|3|1),INTRON(MODIFIER|||||CADM1|processed_transcript|CODING|ENST00000537140|7|1),UPSTREAM(MODIFIER|||||CADM1|processed_transcript|CODING|ENST00000545960||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	43:0:0:0:0,0:0,0:43,43:0,0	118:0:0:0:0,0:0,0:113,114:5,5
11	115796545	.	A	G	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	41:1:0:0:40,41:0,0:0,0:0,0	100:2:0:0:89,90:3,3:6,7:0,0
11	116026433	rs61897733	A	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=116026433;dbSNPBuildID=129;SSR=0;SAO=0;VP=050000000001000102000100;WGT=1;VC=SNV;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	13:0:8:0:13,13:0,0:0,0:0,0	52:2:44:0:35,36:0,0:15,16:0,0
11	116109295	.	A	T	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	41:0:0:0:41,41:0,0:0,0:0,0	112:2:0:0:104,106:0,0:0,0:6,6
11	117345065	.	C	G	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1843|DSCAML1|protein_coding|CODING|ENST00000527706|12|1),INTRON(MODIFIER||||2113|DSCAML1|protein_coding|CODING|ENST00000321322|14|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	42:0:0:0:0,0:42,42:0,0:0,0	115:0:0:0:0,0:106,106:9,9:0,0
11	118201717	.	G	A	.	PASS	NT=ref;QSS=24;QSS_NT=24;SGT=GG->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	50:1:0:0:0,0:0,0:49,58:0,0	99:10:0:0:6,7:0,2:83,125:0,0
11	118678366	rs112795473	T	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=118678366;dbSNPBuildID=132;SSR=0;SAO=0;VP=050000000005040102000100;WGT=1;VC=SNV;ASP;VLD;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:0:0:0:1,1:0,0:0,0:28,43	86:1:0:0:0,0:7,9:2,2:76,109
11	118678369	rs112887345	G	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=118678369;dbSNPBuildID=132;SSR=0;SAO=0;VP=050000000005040102000100;WGT=1;VC=SNV;ASP;VLD;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:0:0:0:0,0:0,0:29,44:0,0	89:1:0:0:8,12:0,0:80,111:0,0
11	119011270	.	A	G	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||517|HINFP|protein_coding|CODING|ENST00000350777||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:0:0:0:34,35:0,0:0,0:0,0	109:0:0:0:98,101:0,0:11,11:0,0
11	120130707	.	G	A	.	PASS	NT=ref;QSS=23;QSS_NT=23;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||390|POU2F3|protein_coding|CODING|ENST00000533620|2|1),INTRON(MODIFIER||||436|POU2F3|protein_coding|CODING|ENST00000260264|2|1),INTRON(MODIFIER||||438|POU2F3|protein_coding|CODING|ENST00000543440|2|1),INTRON(MODIFIER|||||RP11-778O17.4|antisense|NON_CODING|ENST00000558822|3|1),INTRON(MODIFIER|||||RP11-778O17.4|antisense|NON_CODING|ENST00000560146|3|1),INTRON(MODIFIER|||||RP11-778O17.4|antisense|NON_CODING|ENST00000560930|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	45:0:0:0:0,0:0,0:45,45:0,0	98:3:0:0:5,5:0,0:90,93:0,0
11	120670981	.	C	T	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||956|GRIK4|protein_coding|CODING|ENST00000438375|2|1),INTRON(MODIFIER||||956|GRIK4|protein_coding|CODING|ENST00000527524|3|1),INTRON(MODIFIER|||||GRIK4|processed_transcript|CODING|ENST00000526536|2|1),INTRON(MODIFIER|||||GRIK4|processed_transcript|CODING|ENST00000527732|1|1),INTRON(MODIFIER|||||GRIK4|retained_intron|CODING|ENST00000533291|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:0:0:0:0,0:40,40:0,0:0,0	127:1:0:0:0,0:116,116:0,0:10,11
11	121652904	.	A	G	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	42:0:0:0:41,41:1,1:0,0:0,0	127:1:0:0:116,116:1,2:9,9:0,0
11	121888476	.	A	G	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	84:3:9:0:80,176:0,0:1,6:0,0	308:16:34:0:276,593:0,0:16,34:0,0
11	122907027	.	C	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||RPL34P23|processed_pseudogene|NON_CODING|ENST00000469983||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	49:4:0:0:0,0:45,49:0,0:0,0	99:1:0:0:1,1:90,91:0,1:7,7
11	123241700	.	C	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	28:0:0:0:0,0:28,34:0,0:0,0	65:1:0:0:2,2:53,68:0,0:9,13
11	124395661	.	G	C	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	41:2:0:0:0,0:0,0:39,40:0,1	106:2:0:0:0,0:5,5:98,100:1,1
11	125269285	.	C	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||77|PKNOX2|protein_coding|CODING|ENST00000558729||1),DOWNSTREAM(MODIFIER|||||PKNOX2|retained_intron|CODING|ENST00000557814||1),DOWNSTREAM(MODIFIER|||||PKNOX2|retained_intron|CODING|ENST00000559662||1),INTRON(MODIFIER||||408|PKNOX2|protein_coding|CODING|ENST00000542175|6|1),INTRON(MODIFIER||||443|PKNOX2|protein_coding|CODING|ENST00000530517|6|1),INTRON(MODIFIER||||443|PKNOX2|protein_coding|CODING|ENST00000531116|5|1),INTRON(MODIFIER||||472|PKNOX2|protein_coding|CODING|ENST00000298282|7|1),INTRON(MODIFIER|||||PKNOX2|nonsense_mediated_decay|CODING|ENST00000532623|6|1),INTRON(MODIFIER|||||PKNOX2|retained_intron|CODING|ENST00000526955|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:0:0:0:0,0:34,34:0,0:0,0	126:2:0:0:0,0:117,118:1,1:6,7
11	125401991	.	T	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:0:0:0:0,0:0,0:0,0:29,29	124:3:0:0:10,10:0,0:0,0:111,114
11	125469823	.	C	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||101|STT3A|protein_coding|CODING|ENST00000525652|3|1),INTRON(MODIFIER||||116|STT3A|protein_coding|CODING|ENST00000529886|3|1),INTRON(MODIFIER||||118|STT3A|protein_coding|CODING|ENST00000527606|3|1),INTRON(MODIFIER||||613|STT3A|protein_coding|CODING|ENST00000531491|2|1),INTRON(MODIFIER||||705|STT3A|protein_coding|CODING|ENST00000392708|3|1),INTRON(MODIFIER||||705|STT3A|protein_coding|CODING|ENST00000529196|4|1),INTRON(MODIFIER|||||STT3A|retained_intron|CODING|ENST00000534472|3|1),UPSTREAM(MODIFIER|||||STT3A|processed_transcript|CODING|ENST00000527456||1),UPSTREAM(MODIFIER|||||STT3A|retained_intron|CODING|ENST00000526213||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:2:0:0:0,0:28,30:0,0:0,0	83:1:0:0:0,0:73,75:0,0:9,10
11	126720162	.	C	G	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||600|KIRREL3|protein_coding|CODING|ENST00000525704|1|1),INTRON(MODIFIER||||766|KIRREL3|protein_coding|CODING|ENST00000529097|1|1),INTRON(MODIFIER||||778|KIRREL3|protein_coding|CODING|ENST00000525144|1|1),INTRON(MODIFIER|||||KIRREL3|processed_transcript|CODING|ENST00000533026|2|1),INTRON(MODIFIER|||||KIRREL3|processed_transcript|CODING|ENST00000547738|1|1),INTRON(MODIFIER|||||KIRREL3|processed_transcript|CODING|ENST00000549874|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:0:0:0:0,0:37,37:0,0:0,0	115:0:0:0:0,0:106,106:9,9:0,0
11	128549975	.	A	T	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||100|RP11-744N12.3|protein_coding|CODING|ENST00000501648||1),INTRON(MODIFIER|||||RP11-744N12.3|lincRNA|CODING|ENST00000572256|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	41:0:0:0:41,41:0,0:0,0:0,0	107:1:0:0:101,102:0,0:0,0:5,7
11	130733215	.	G	A	.	PASS	NT=ref;QSS=24;QSS_NT=24;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||RP11-890B15.3|lincRNA|NON_CODING|ENST00000525716||1),INTRON(MODIFIER|||||RP11-890B15.2|lincRNA|NON_CODING|ENST00000533812|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	45:0:0:0:0,0:0,0:45,45:0,0	96:0:0:0:12,12:0,0:84,84:0,0
11	131135889	.	A	G	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||AP002856.5|processed_transcript|NON_CODING|ENST00000416553|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	47:1:0:0:44,48:0,0:0,0:2,2	106:3:0:0:97,105:0,0:6,7:0,0
11	131178198	rs200844679	G	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=131178198;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:0:0:0:0,0:0,0:32,34:0,0	73:1:0:0:0,0:0,0:64,71:8,9
11	131522970	.	T	G	.	PASS	NT=ref;QSS=26;QSS_NT=26;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||17|NTM|protein_coding|CODING|ENST00000416661|1|1),INTRON(MODIFIER||||190|NTM|protein_coding|CODING|ENST00000550167|1|1),INTRON(MODIFIER||||344|NTM|protein_coding|CODING|ENST00000374791|1|1),INTRON(MODIFIER||||355|NTM|protein_coding|CODING|ENST00000539799|1|1),INTRON(MODIFIER||||35|NTM|protein_coding|CODING|ENST00000436745|1|1),INTRON(MODIFIER|||||NTM|processed_transcript|CODING|ENST00000477098|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	53:0:0:0:0,0:0,0:0,0:53,53	101:1:0:0:0,0:0,0:8,8:92,93
11	131911393	.	A	G	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||190|NTM|protein_coding|CODING|ENST00000550167|3|1),INTRON(MODIFIER||||316|NTM|protein_coding|CODING|ENST00000374784|1|1),INTRON(MODIFIER||||344|NTM|protein_coding|CODING|ENST00000374786|1|1),INTRON(MODIFIER||||344|NTM|protein_coding|CODING|ENST00000374791|2|1),INTRON(MODIFIER||||346|NTM|protein_coding|CODING|ENST00000427481|2|1),INTRON(MODIFIER||||355|NTM|protein_coding|CODING|ENST00000425719|1|1),INTRON(MODIFIER||||355|NTM|protein_coding|CODING|ENST00000539799|2|1),INTRON(MODIFIER|||||NTM|processed_transcript|CODING|ENST00000498764|2|1),INTRON(MODIFIER|||||NTM|retained_intron|CODING|ENST00000479431|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:0:0:0:35,35:0,0:0,0:0,0	114:2:0:0:107,109:0,0:5,5:0,0
11	132792919	.	C	T	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||304|OPCML|protein_coding|CODING|ENST00000374778|2|1),INTRON(MODIFIER||||338|OPCML|protein_coding|CODING|ENST00000524381|2|1),INTRON(MODIFIER||||345|OPCML|protein_coding|CODING|ENST00000331898|1|1),INTRON(MODIFIER||||354|OPCML|protein_coding|CODING|ENST00000541867|1|1),INTRON(MODIFIER|||||OPCML|processed_transcript|CODING|ENST00000525412|1|1),INTRON(MODIFIER|||||OPCML|processed_transcript|CODING|ENST00000529038|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:1:0:0:0,1:37,38:0,0:0,0	134:3:0:0:0,2:120,122:0,0:11,11
11	132867208	.	T	A	.	PASS	NT=ref;QSS=27;QSS_NT=27;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||338|OPCML|protein_coding|CODING|ENST00000524381|1|1),INTRON(MODIFIER|||||OPCML|processed_transcript|CODING|ENST00000529038|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	54:0:0:0:0,0:0,0:0,0:54,54	121:1:0:0:9,9:1,1:0,0:110,111
11	133013040	.	C	A	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||338|OPCML|protein_coding|CODING|ENST00000524381|1|1),INTRON(MODIFIER|||||OPCML|processed_transcript|CODING|ENST00000529038|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	46:0:0:0:0,0:46,46:0,0:0,0	103:0:0:0:6,6:97,97:0,0:0,0
11	133673202	.	G	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-448P19.1|lincRNA|NON_CODING|ENST00000526254|2|1),INTRON(MODIFIER|||||RP11-448P19.1|lincRNA|NON_CODING|ENST00000530621|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:2:0:0:0,0:0,0:34,36:0,0	104:2:0:0:6,6:0,0:96,98:0,0
11	133775661	.	G	A	.	PASS	NT=ref;QSS=23;QSS_NT=23;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||119|RP11-259P6.1|protein_coding|CODING|ENST00000564347||1),DOWNSTREAM(MODIFIER|||||RP11-259P6.1|processed_transcript|CODING|ENST00000530957||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	46:0:0:0:0,0:0,0:46,46:0,0	96:1:0:0:5,6:1,1:89,89:0,0
11	133810325	.	C	T	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||161|IGSF9B|protein_coding|CODING|ENST00000526663||1),INTRON(MODIFIER||||1349|IGSF9B|protein_coding|CODING|ENST00000321016|3|1),INTRON(MODIFIER||||205|IGSF9B|protein_coding|CODING|ENST00000533160|2|1),INTRON(MODIFIER||||710|IGSF9B|protein_coding|CODING|ENST00000527648|3|1),UPSTREAM(MODIFIER||||1191|IGSF9B|protein_coding|CODING|ENST00000533871||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	44:4:0:0:0,0:39,46:1,1:0,0	116:10:0:0:0,0:100,119:0,0:6,7
11	133906753	.	A	C	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=AA->AC;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER|||||RP11-713P17.3|processed_transcript|NON_CODING|ENST00000527712|1|1),INTRON(MODIFIER|||||RP11-713P17.3|processed_transcript|NON_CODING|ENST00000529070|1|1),INTRON(MODIFIER|||||RP11-713P17.3|processed_transcript|NON_CODING|ENST00000532706|1|1),INTRON(MODIFIER|||||RP11-713P17.3|processed_transcript|NON_CODING|ENST00000533091|1|1),INTRON(MODIFIER|||||RP11-713P17.3|processed_transcript|NON_CODING|ENST00000533922|1|1),INTRON(MODIFIER|||||RP11-713P17.4|lincRNA|NON_CODING|ENST00000526377|1|1),UPSTREAM(MODIFIER|||||RP11-713P17.3|processed_transcript|NON_CODING|ENST00000531938||1),UPSTREAM(MODIFIER|||||RP11-713P17.3|processed_transcript|NON_CODING|ENST00000532327||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	47:1:0:0:45,45:1,2:0,0:0,0	108:5:0:0:84,85:18,22:1,2:0,0
11	134225830	.	C	T	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||636|GLB1L2|protein_coding|CODING|ENST00000339772|5|1),INTRON(MODIFIER||||636|GLB1L2|protein_coding|CODING|ENST00000389881|5|1),INTRON(MODIFIER||||636|GLB1L2|protein_coding|CODING|ENST00000535456|5|1),INTRON(MODIFIER|||||GLB1L2|processed_transcript|CODING|ENST00000529077|2|1),INTRON(MODIFIER|||||GLB1L2|retained_intron|CODING|ENST00000531081|1|1),UPSTREAM(MODIFIER|||||GLB1L2|processed_transcript|CODING|ENST00000533355||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	41:1:0:0:0,0:40,41:0,0:0,0	110:0:0:0:0,0:104,104:0,0:6,6
11	134357612	.	C	T	.	PASS	NT=ref;QSS=30;QSS_NT=30;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=EXON(MODIFIER|||||RP11-627G23.1|lincRNA|NON_CODING|ENST00000528482|5|1),INTRON(MODIFIER|||||RP11-627G23.1|lincRNA|NON_CODING|ENST00000533390|5|1),INTRON(MODIFIER|||||RP11-627G23.1|retained_intron|NON_CODING|ENST00000532886|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	63:3:0:0:0,0:60,63:0,0:0,0	123:13:0:0:0,0:105,117:0,0:5,6
11	134574719	.	C	G	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:0:0:0:0,0:35,44:0,0:0,0	100:3:0:0:0,0:91,114:6,7:0,1
11	134697464	.	C	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	18:1:17:0:0,0:17,18:0,0:0,0	66:0:54:0:0,0:53,54:0,0:13,14
11	134796736	.	A	G	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:1:0:0:28,33:0,0:1,2:0,0	101:4:0:0:76,84:1,1:19,24:1,1
11	134807009	rs187450555	T	A	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=134807009;dbSNPBuildID=135;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	63:3:0:0:1,1:0,0:0,0:59,70	102:1:0:0:6,7:0,0:0,0:95,104
12	482584	.	G	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||121|KDM5A|protein_coding|CODING|ENST00000536014|3|1),INTRON(MODIFIER||||125|KDM5A|protein_coding|CODING|ENST00000535014|2|1),INTRON(MODIFIER||||1636|KDM5A|protein_coding|CODING|ENST00000382815|3|1),INTRON(MODIFIER||||1690|KDM5A|protein_coding|CODING|ENST00000399788|3|1),INTRON(MODIFIER||||714|KDM5A|protein_coding|CODING|ENST00000544760|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	41:0:0:0:0,0:0,0:41,41:0,0	100:0:0:0:0,0:0,0:96,96:4,4
12	1683687	.	G	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||117|WNT5B|protein_coding|CODING|ENST00000539198|1|1),INTRON(MODIFIER||||156|WNT5B|protein_coding|CODING|ENST00000545811|1|1),INTRON(MODIFIER||||418|FBXL14|protein_coding|CODING|ENST00000339235|1|1),UPSTREAM(MODIFIER||||359|WNT5B|protein_coding|CODING|ENST00000537031||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:8:0:0:0,0:0,0:32,51:0,0	106:19:0:0:7,8:0,0:80,121:0,0
12	4259667	.	C	T	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	43:0:0:0:0,0:43,43:0,0:0,0	100:1:0:0:0,0:92,93:1,1:6,6
12	5144246	.	G	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||RP11-429A20.2|processed_pseudogene|NON_CODING|ENST00000537214||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:0:0:0:0,0:0,0:35,35:0,0	94:0:0:0:0,0:0,0:90,92:4,4
12	5327092	rs143601775	C	T	.	PASS	NT=ref;QSS=25;QSS_NT=25;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=5327092;GMAF=0.0041;dbSNPBuildID=134;SSR=0;SAO=0;VP=050000000005000014000100;WGT=1;VC=SNV;ASP;KGPhase1;KGPROD	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	42:0:0:0:0,0:42,42:0,0:0,0	90:1:0:0:0,1:76,76:0,0:13,13
12	5516951	.	C	T	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||RP11-1038A11.1|lincRNA|NON_CODING|ENST00000538430||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	42:0:0:0:0,0:42,42:0,0:0,0	111:1:0:0:1,1:104,105:0,0:5,5
12	5781256	rs61908100	A	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AC;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER||||202|ANO2|protein_coding|CODING|ENST00000545860|3|1),INTRON(MODIFIER||||998|ANO2|protein_coding|CODING|ENST00000327087|15|1),INTRON(MODIFIER||||999|ANO2|protein_coding|CODING|ENST00000356134|16|1),INTRON(MODIFIER||||999|ANO2|protein_coding|CODING|ENST00000546188|15|1),INTRON(MODIFIER|||||ANO2|processed_transcript|CODING|ENST00000538154|4|1),INTRON(MODIFIER|||||ANO2|processed_transcript|CODING|ENST00000542326|2|1);RSPOS=5781256;dbSNPBuildID=129;SSR=1;SAO=0;VP=050000080001000002000140;GENEINFO=ANO2:57101;WGT=1;VC=SNV;INT;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	44:2:0:0:42,42:0,1:0,0:0,0	84:0:0:0:78,78:5,7:0,0:1,1
12	5781394	rs61908103	T	C	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=TT->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER||||202|ANO2|protein_coding|CODING|ENST00000545860|3|1),INTRON(MODIFIER||||998|ANO2|protein_coding|CODING|ENST00000327087|15|1),INTRON(MODIFIER||||999|ANO2|protein_coding|CODING|ENST00000356134|16|1),INTRON(MODIFIER||||999|ANO2|protein_coding|CODING|ENST00000546188|15|1),INTRON(MODIFIER|||||ANO2|processed_transcript|CODING|ENST00000538154|4|1),INTRON(MODIFIER|||||ANO2|processed_transcript|CODING|ENST00000542326|2|1);RSPOS=5781394;dbSNPBuildID=129;SSR=0;SAO=0;VP=050100080001040102000100;GENEINFO=ANO2:57101;WGT=1;VC=SNV;SLO;INT;VLD;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	49:1:0:0:0,0:0,1:0,0:48,49	102:6:0:0:0,0:6,12:0,1:90,93
12	6352099	.	A	G	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=DOWNSTREAM(MODIFIER||||159|CD9|protein_coding|CODING|ENST00000382515||1),DOWNSTREAM(MODIFIER||||228|CD9|protein_coding|CODING|ENST00000009180||1),DOWNSTREAM(MODIFIER||||228|CD9|protein_coding|CODING|ENST00000382518||1),DOWNSTREAM(MODIFIER|||||CD9|processed_transcript|CODING|ENST00000481267||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	43:0:0:0:43,43:0,0:0,1:0,0	96:2:0:0:86,87:0,0:8,9:0,0
12	7841167	.	G	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||364|GDF3|protein_coding|CODING|ENST00000329913||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:1:0:0:0,0:0,0:32,40:0,0	96:0:0:0:0,0:6,7:90,96:0,0
12	7961095	rs11055900	A	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||497|SLC2A14|protein_coding|CODING|ENST00000340749||1),DOWNSTREAM(MODIFIER||||497|SLC2A14|protein_coding|CODING|ENST00000431042||1),DOWNSTREAM(MODIFIER||||520|SLC2A14|protein_coding|CODING|ENST00000543909||1),INTRON(MODIFIER||||275|NECAP1|protein_coding|CODING|ENST00000545179|1|1);RSPOS=7961095;dbSNPBuildID=120;SSR=0;SAO=0;VP=050100000005000102000100;WGT=1;VC=SNV;SLO;ASP;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	22:0:11:0:22,22:0,0:0,0:0,0	46:2:37:0:38,38:0,0:0,1:6,7
12	8119075	.	A	C	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||275|NECAP1|protein_coding|CODING|ENST00000545179|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:0:0:0:39,39:0,0:0,0:0,0	96:3:0:0:82,84:11,12:0,0:0,0
12	8593027	rs113336603	A	C	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||RP11-113C12.5|processed_pseudogene|NON_CODING|ENST00000544395||1);RSPOS=8593027;dbSNPBuildID=132;SSR=0;SAO=0;VP=050100000005000102000100;WGT=1;VC=SNV;SLO;ASP;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	42:0:0:0:42,42:0,0:0,0:0,0	97:0:0:0:92,92:5,6:0,0:0,0
12	8593073	.	C	A	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||RP11-113C12.5|processed_pseudogene|NON_CODING|ENST00000544395||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	41:0:0:0:0,0:41,41:0,0:0,0	105:1:0:0:5,6:99,100:0,0:0,0
12	8964334	.	G	A	.	PASS	NT=ref;QSS=24;QSS_NT=24;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||A2ML1-AS1|antisense|NON_CODING|ENST00000537288|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	47:0:0:0:0,0:0,0:47,48:0,0	93:1:0:0:11,11:0,0:81,82:0,0
12	10599851	.	T	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||KLRC1|retained_intron|CODING|ENST00000537699||1),INTRON(MODIFIER||||215|KLRC1|protein_coding|CODING|ENST00000347831|5|1),INTRON(MODIFIER||||215|KLRC1|protein_coding|CODING|ENST00000408006|6|1),INTRON(MODIFIER||||228|KLRC1|protein_coding|CODING|ENST00000536188|7|1),INTRON(MODIFIER||||233|KLRC1|protein_coding|CODING|ENST00000359151|6|1),INTRON(MODIFIER||||233|KLRC1|protein_coding|CODING|ENST00000544822|7|1),UPSTREAM(MODIFIER||||172|KLRC2|protein_coding|CODING|ENST00000536833||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:0:0:0:0,0:0,0:0,0:31,31	94:5:0:0:0,0:5,5:1,2:83,88
12	11742576	.	T	C	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-434C1.1|lincRNA|NON_CODING|ENST00000541162|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	41:2:0:0:0,0:0,0:0,0:39,41	106:1:0:0:0,0:9,10:3,3:93,94
12	11766420	.	A	C	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:0:0:0:37,37:0,0:0,0:0,0	135:0:0:0:129,132:6,6:0,0:0,0
12	11766432	.	T	C	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=TT->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:0:0:0:0,0:0,0:1,1:38,38	133:0:0:0:0,0:6,6:0,0:127,131
12	12463650	.	C	T	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:0:0:0:0,0:39,40:0,0:0,0	110:4:0:0:0,0:101,105:0,1:5,5
12	14036871	.	G	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1484|GRIN2B|protein_coding|CODING|ENST00000279593|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:0:0:0:0,0:0,0:31,31:0,0	80:0:0:0:8,8:0,0:70,70:2,2
12	14327645	.	T	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||RP11-72J9.1|processed_pseudogene|NON_CODING|ENST00000546187||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	26:0:1:0:0,0:0,0:0,0:26,26	74:2:0:0:0,0:7,7:0,0:65,67
12	14411312	.	C	A	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||RP11-134N1.3|processed_pseudogene|NON_CODING|ENST00000541815||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:0:0:0:0,0:38,38:0,0:0,0	97:0:0:0:5,5:92,92:0,0:0,0
12	14438435	.	C	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:0:0:0:0,0:40,41:0,0:0,0	91:0:0:0:0,0:87,89:0,0:4,4
12	14438437	.	A	G	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	42:0:0:0:41,42:1,1:0,0:0,0	90:0:0:0:85,87:0,0:5,5:0,0
12	14438444	.	A	G	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	41:1:0:0:40,43:0,0:0,0:0,0	89:0:0:0:83,84:0,0:6,7:0,0
12	15431215	.	C	A	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||37|RERG|protein_coding|CODING|ENST00000393736|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:0:0:0:0,0:39,39:0,0:0,0	112:2:0:0:8,9:102,103:0,0:0,0
12	18939577	rs143301741	G	T	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=18939577;dbSNPBuildID=134;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:3:0:0:0,0:0,0:36,40:0,0	107:5:0:0:0,0:0,0:96,106:6,10
12	18939619	rs202201256	C	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=18939619;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	28:0:0:0:0,0:28,32:0,0:0,0	113:2:0:0:0,0:103,107:1,2:7,11
12	20829534	.	C	A	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1141|PDE3A|protein_coding|CODING|ENST00000359062|15|1),INTRON(MODIFIER|||||PDE3A|processed_transcript|CODING|ENST00000544307|14|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	41:2:0:0:0,0:39,41:0,0:0,0	110:2:0:0:13,14:95,97:0,0:0,0
12	22643701	.	A	G	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1000|KIAA0528|protein_coding|CODING|ENST00000333957|11|1),INTRON(MODIFIER||||1042|KIAA0528|protein_coding|CODING|ENST00000396028|11|1),INTRON(MODIFIER||||1051|KIAA0528|protein_coding|CODING|ENST00000446597|11|1),INTRON(MODIFIER||||1051|KIAA0528|protein_coding|CODING|ENST00000542676|10|1),INTRON(MODIFIER||||1053|KIAA0528|protein_coding|CODING|ENST00000536386|12|1),INTRON(MODIFIER||||1054|KIAA0528|protein_coding|CODING|ENST00000545552|12|1),INTRON(MODIFIER||||856|KIAA0528|protein_coding|CODING|ENST00000544930|12|1),INTRON(MODIFIER|||||KIAA0528|processed_transcript|CODING|ENST00000543855|1|1),INTRON(MODIFIER|||||KIAA0528|retained_intron|CODING|ENST00000541310|12|1),INTRON(MODIFIER|||||KIAA0528|retained_intron|CODING|ENST00000543797|2|1),UPSTREAM(MODIFIER|||||KIAA0528|retained_intron|CODING|ENST00000542768||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:0:0:0:35,35:0,0:0,0:0,0	127:0:0:0:118,118:0,0:9,9:0,0
12	23228189	rs11046779	G	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-114G22.1|lincRNA|NON_CODING|ENST00000540895|8|1);RSPOS=23228189;dbSNPBuildID=120;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	21:0:0:0:0,0:0,0:21,26:0,0	60:0:0:0:9,9:0,0:51,55:0,0
12	23471597	.	T	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:2:0:0:0,0:0,0:0,0:35,37	101:1:0:0:0,0:4,4:0,0:96,97
12	23709813	.	G	A	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||377|SOX5|protein_coding|CODING|ENST00000396007|3|1),INTRON(MODIFIER||||642|SOX5|protein_coding|CODING|ENST00000381381|9|1),INTRON(MODIFIER||||642|SOX5|protein_coding|CODING|ENST00000541536|8|1),INTRON(MODIFIER||||728|SOX5|protein_coding|CODING|ENST00000537393|11|1),INTRON(MODIFIER||||750|SOX5|protein_coding|CODING|ENST00000309359|11|1),INTRON(MODIFIER||||750|SOX5|protein_coding|CODING|ENST00000546136|10|1),INTRON(MODIFIER||||753|SOX5|protein_coding|CODING|ENST00000545921|11|1),INTRON(MODIFIER||||763|SOX5|protein_coding|CODING|ENST00000451604|11|1),INTRON(MODIFIER|||||SOX5|nonsense_mediated_decay|CODING|ENST00000367206|11|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:0:0:0:0,0:0,0:36,37:0,0	91:2:0:0:6,6:0,0:83,84:0,1
12	24005881	.	A	G	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||128|SOX5|protein_coding|CODING|ENST00000441133|3|1),INTRON(MODIFIER||||143|SOX5|protein_coding|CODING|ENST00000538083|2|1),INTRON(MODIFIER||||241|SOX5|protein_coding|CODING|ENST00000541847|2|1),INTRON(MODIFIER||||642|SOX5|protein_coding|CODING|ENST00000381381|2|1),INTRON(MODIFIER||||642|SOX5|protein_coding|CODING|ENST00000541536|1|1),INTRON(MODIFIER||||728|SOX5|protein_coding|CODING|ENST00000537393|2|1),INTRON(MODIFIER||||750|SOX5|protein_coding|CODING|ENST00000309359|2|1),INTRON(MODIFIER||||750|SOX5|protein_coding|CODING|ENST00000546136|1|1),INTRON(MODIFIER||||753|SOX5|protein_coding|CODING|ENST00000545921|2|1),INTRON(MODIFIER||||763|SOX5|protein_coding|CODING|ENST00000451604|2|1),INTRON(MODIFIER|||||SOX5|nonsense_mediated_decay|CODING|ENST00000367206|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:0:0:0:37,37:0,0:0,0:0,0	86:0:0:0:80,80:0,0:6,6:0,0
12	24022514	.	G	T	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||128|SOX5|protein_coding|CODING|ENST00000441133|3|1),INTRON(MODIFIER||||143|SOX5|protein_coding|CODING|ENST00000538083|2|1),INTRON(MODIFIER||||241|SOX5|protein_coding|CODING|ENST00000541847|2|1),INTRON(MODIFIER||||642|SOX5|protein_coding|CODING|ENST00000381381|2|1),INTRON(MODIFIER||||642|SOX5|protein_coding|CODING|ENST00000541536|1|1),INTRON(MODIFIER||||728|SOX5|protein_coding|CODING|ENST00000537393|2|1),INTRON(MODIFIER||||750|SOX5|protein_coding|CODING|ENST00000309359|2|1),INTRON(MODIFIER||||750|SOX5|protein_coding|CODING|ENST00000546136|1|1),INTRON(MODIFIER||||753|SOX5|protein_coding|CODING|ENST00000545921|2|1),INTRON(MODIFIER||||763|SOX5|protein_coding|CODING|ENST00000451604|2|1),INTRON(MODIFIER|||||SOX5|nonsense_mediated_decay|CODING|ENST00000367206|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:0:0:0:0,0:0,0:39,39:0,0	119:0:0:0:0,0:0,0:107,108:12,12
12	25230161	.	A	T	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||117|LRMP|protein_coding|CODING|ENST00000550945|5|1),INTRON(MODIFIER||||119|LRMP|protein_coding|CODING|ENST00000557489|6|1),INTRON(MODIFIER||||446|LRMP|protein_coding|CODING|ENST00000536173|1|1),INTRON(MODIFIER||||499|LRMP|protein_coding|CODING|ENST00000354454|5|1),INTRON(MODIFIER||||499|LRMP|protein_coding|CODING|ENST00000547044|4|1),INTRON(MODIFIER||||499|LRMP|protein_coding|CODING|ENST00000548766|4|1),INTRON(MODIFIER||||75|LRMP|protein_coding|CODING|ENST00000554942|5|1),INTRON(MODIFIER|||||LRMP|nonsense_mediated_decay|CODING|ENST00000361433|5|1),INTRON(MODIFIER|||||LRMP|nonsense_mediated_decay|CODING|ENST00000554272|6|1),INTRON(MODIFIER|||||LRMP|processed_transcript|CODING|ENST00000557472|1|1),INTRON(MODIFIER|||||LRMP|retained_intron|CODING|ENST00000549437|6|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	45:9:4:0:36,83:0,0:0,0:0,1	207:51:5:0:141,329:0,2:0,0:15,24
12	29057146	rs61916625	A	G	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=29057146;dbSNPBuildID=129;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:0:0:0:35,35:0,0:0,0:0,0	139:1:0:0:125,126:0,0:13,13:0,0
12	31963157	.	A	G	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||SNORA25|snoRNA|NON_CODING|ENST00000516395||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:0:0:0:38,38:0,0:0,0:0,0	94:1:0:0:85,86:1,1:7,7:0,0
12	31963169	.	G	T	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||SNORA25|snoRNA|NON_CODING|ENST00000516395||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:0:0:0:0,0:0,0:37,37:0,0	101:1:0:0:0,0:0,0:91,92:9,9
12	32236953	.	T	A	.	PASS	NT=ref;QSS=28;QSS_NT=28;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	41:0:0:0:0,0:0,0:0,0:41,41	78:1:0:0:13,13:0,0:0,0:64,65
12	33562243	.	C	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||AC023158.1|miRNA|NON_CODING|ENST00000516979||1),INTRON(MODIFIER||||342|SYT10|protein_coding|CODING|ENST00000535526|3|1),INTRON(MODIFIER||||523|SYT10|protein_coding|CODING|ENST00000228567|2|1),INTRON(MODIFIER|||||SYT10|nonsense_mediated_decay|CODING|ENST00000539102|3|1),INTRON(MODIFIER|||||SYT10|processed_transcript|CODING|ENST00000567656|1|1),UPSTREAM(MODIFIER|||||RP11-438D14.2|lincRNA|NON_CODING|ENST00000561632||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:2:0:0:0,0:35,36:0,0:0,0	115:6:0:0:0,0:101,105:0,0:8,10
12	34018548	.	A	G	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:0:0:0:32,32:0,0:0,0:0,0	97:1:0:0:89,90:0,0:7,7:0,0
12	34142518	.	A	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:0:0:0:29,29:0,0:0,0:0,0	106:2:0:0:96,98:1,1:7,8:0,0
12	34524077	.	C	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	50:1:0:0:1,1:48,49:0,0:0,0	82:0:0:0:8,8:74,74:0,0:0,0
12	34524084	.	G	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	50:2:0:0:0,0:0,1:47,48:1,1	83:0:0:0:0,0:2,2:73,73:8,8
12	34546186	.	A	C	.	PASS	NT=ref;QSS=25;QSS_NT=25;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	55:0:0:0:55,56:0,0:0,0:0,0	91:5:0:0:77,80:9,11:0,0:0,0
12	34550774	.	T	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	50:3:0:0:0,0:1,1:2,3:44,46	86:7:0:0:0,0:6,9:2,3:71,77
12	34642401	.	C	A	.	PASS	NT=ref;QSS=25;QSS_NT=25;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	58:8:0:0:0,0:50,69:0,1:0,0	125:14:0:0:6,11:105,167:0,10:0,3
12	34696127	rs143132025	G	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=34696127;GMAF=0.0018;dbSNPBuildID=134;SSR=0;SAO=0;VP=050000000005000014000100;WGT=1;VC=SNV;ASP;KGPhase1;KGPROD	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:1:0:0:0,0:0,0:31,34:0,0	117:4:0:0:0,0:0,0:105,109:8,11
12	34717764	.	T	G	.	PASS	NT=ref;QSS=26;QSS_NT=26;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	61:10:0:0:0,6:0,0:0,0:51,90	163:27:0:0:0,32:0,1:12,14:124,231
12	34717790	.	C	T	.	PASS	NT=ref;QSS=23;QSS_NT=23;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	54:9:0:0:0,0:45,89:0,1:0,0	164:28:0:0:0,0:127,260:3,3:6,14
12	34717813	.	T	A	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	49:9:0:0:0,0:0,1:0,0:40,72	156:24:0:0:7,10:0,1:1,1:124,242
12	34837054	.	T	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	41:4:1:0:0,0:0,0:0,1:37,42	142:10:2:0:0,0:5,5:0,0:127,149
12	34846261	.	A	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	43:5:0:0:38,92:0,0:0,1:0,2	123:6:0:0:112,234:0,0:5,11:0,2
12	37879153	.	C	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:1:0:0:0,0:38,40:0,0:0,1	137:1:0:0:0,0:128,132:0,0:8,17
12	37898967	.	A	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AC;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:1:0:0:37,43:0,1:0,0:0,0	122:0:0:0:113,120:9,10:0,0:0,0
12	37917743	rs183917663	T	A	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=TT->AT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=37917743;dbSNPBuildID=135;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:0:0:0:0,1:0,0:0,0:38,38	99:0:0:0:7,20:0,0:0,0:92,94
12	37917771	.	T	C	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=TT->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	43:0:0:0:0,0:0,1:0,0:43,43	105:0:0:0:0,0:5,18:0,0:100,101
12	37994520	.	G	T	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	58:16:0:0:0,0:0,1:42,136:0,3	163:45:0:0:0,5:0,0:111,344:7,21
12	38015935	.	A	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	25:0:0:0:25,28:0,0:0,1:0,0	51:1:0:0:44,48:0,0:6,14:0,0
12	38034345	.	A	T	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=AA->AT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	50:2:0:0:47,96:1,1:0,2:0,3	168:27:0:0:131,238:0,0:0,13:10,15
12	38036801	.	G	T	.	PASS	NT=ref;QSS=25;QSS_NT=25;SGT=GG->GT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	85:8:0:0:0,0:0,0:77,190:0,9	224:25:0:0:0,4:0,1:190,443:9,29
12	38043376	.	G	C	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->CG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:1:0:0:0,0:0,2:37,61:0,2	114:7:0:0:0,1:6,13:100,167:1,5
12	38045998	.	A	G	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	48:3:0:0:45,55:0,0:0,1:0,0	96:2:0:0:88,99:0,0:6,16:0,0
12	38046321	.	G	A	.	PASS	NT=ref;QSS=27;QSS_NT=27;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	69:15:0:0:0,3:0,2:54,112:0,0	186:45:0:0:11,17:0,5:130,317:0,0
12	38087898	.	T	C	.	PASS	NT=ref;QSS=23;QSS_NT=23;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	52:7:0:0:0,1:0,0:0,1:45,78	137:28:0:0:0,4:5,15:0,4:104,229
12	38087907	.	A	T	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	50:5:0:0:44,76:1,1:0,0:0,0	141:20:0:0:116,238:0,1:0,0:5,16
12	38093871	.	T	G	.	PASS	NT=ref;QSS=24;QSS_NT=24;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	59:12:0:0:0,0:0,0:0,1:47,69	154:19:0:0:0,0:0,0:11,16:124,175
12	38421534	.	C	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:3:0:0:0,0:34,43:0,1:0,1	129:20:0:0:0,0:104,145:5,18:0,3
12	38421536	.	C	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:3:0:0:0,0:34,43:0,1:0,0	127:19:0:0:1,1:102,141:5,19:0,0
12	38550479	.	G	T	.	PASS	NT=ref;QSS=25;QSS_NT=25;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||RNA5SP358|rRNA|NON_CODING|ENST00000362973||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	54:2:0:0:0,0:0,0:52,54:0,0	115:7:0:0:0,0:0,0:103,109:5,6
12	38580949	.	T	A	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=TT->AT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	53:0:0:0:0,2:0,0:0,0:53,81	166:2:0:0:6,10:0,1:0,0:158,241
12	38582888	.	G	A	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=GG->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:0:0:0:0,2:0,0:39,80:0,0	152:1:0:0:7,12:1,1:143,259:0,0
12	38582939	.	A	T	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=AA->AT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	45:3:0:0:42,84:0,1:0,0:0,3	177:7:0:0:163,295:0,0:0,0:7,16
12	39361636	rs199767956	C	T	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=CC->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=39361636;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	23:0:0:0:0,0:23,24:0,0:0,2	56:1:0:0:0,0:38,43:0,0:17,24
12	40053810	.	G	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||394|C12orf40|protein_coding|CODING|ENST00000398716|7|1),INTRON(MODIFIER||||477|C12orf40|protein_coding|CODING|ENST00000405531|7|1),INTRON(MODIFIER||||652|C12orf40|protein_coding|CODING|ENST00000324616|7|1),INTRON(MODIFIER|||||C12orf40|processed_transcript|CODING|ENST00000468200|6|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:0:0:0:0,0:0,0:33,34:0,0	104:1:0:0:5,5:0,0:98,99:0,0
12	40053811	.	G	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||394|C12orf40|protein_coding|CODING|ENST00000398716|7|1),INTRON(MODIFIER||||477|C12orf40|protein_coding|CODING|ENST00000405531|7|1),INTRON(MODIFIER||||652|C12orf40|protein_coding|CODING|ENST00000324616|7|1),INTRON(MODIFIER|||||C12orf40|processed_transcript|CODING|ENST00000468200|6|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:0:0:0:0,0:0,0:33,34:0,0	103:1:0:0:0,0:0,0:97,98:5,5
12	40176101	rs116760067	C	T	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||648|SLC2A13|protein_coding|CODING|ENST00000280871|7|1),INTRON(MODIFIER|||||C12orf40|processed_transcript|CODING|ENST00000468200|16|1);RSPOS=40176101;GMAF=0.0078;dbSNPBuildID=132;SSR=0;SAO=0;VP=050000080005040014000100;GENEINFO=SLC2A13:114134;WGT=1;VC=SNV;INT;ASP;VLD;KGPhase1;KGPROD	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:0:0:0:0,0:35,35:0,0:0,0	101:1:0:0:0,0:87,88:0,0:13,14
12	41295245	.	G	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1018|CNTN1|protein_coding|CODING|ENST00000551295|1|1),INTRON(MODIFIER||||61|CNTN1|protein_coding|CODING|ENST00000551424|2|1),INTRON(MODIFIER||||627|CNTN1|protein_coding|CODING|ENST00000547702|1|1),INTRON(MODIFIER||||627|CNTN1|protein_coding|CODING|ENST00000547849|1|1),INTRON(MODIFIER||||71|CNTN1|protein_coding|CODING|ENST00000552913|2|1),INTRON(MODIFIER||||84|CNTN1|protein_coding|CODING|ENST00000548005|2|1),INTRON(MODIFIER||||89|CNTN1|protein_coding|CODING|ENST00000552248|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	43:0:0:0:0,0:1,1:42,42:0,0	104:0:0:0:4,4:0,0:100,100:0,0
12	41401157	rs12302473	C	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1007|CNTN1|protein_coding|CODING|ENST00000348761|15|1),INTRON(MODIFIER||||1018|CNTN1|protein_coding|CODING|ENST00000347616|16|1),INTRON(MODIFIER||||1018|CNTN1|protein_coding|CODING|ENST00000551295|17|1),INTRON(MODIFIER|||||CNTN1|processed_transcript|CODING|ENST00000550305|1|1);RSPOS=41401157;GMAF=0.006;dbSNPBuildID=120;SSR=0;SAO=0;VP=050000080001040016000100;GENEINFO=CNTN1:1272;WGT=1;VC=SNV;INT;VLD;KGPhase1;KGPROD;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:1:0:0:0,0:29,30:0,1:0,0	117:2:0:0:0,0:107,109:1,1:7,7
12	42071397	.	G	A	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:1:0:0:0,0:0,0:39,40:0,0	97:0:0:0:6,9:0,0:91,94:0,0
12	43466880	.	G	C	.	PASS	NT=ref;QSS=26;QSS_NT=26;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	47:0:0:0:0,0:0,1:47,48:0,0	173:0:0:0:0,0:25,35:148,159:0,0
12	48603888	rs199719543	G	A	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=48603888;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	47:2:0:0:0,1:0,0:45,51:0,0	107:1:0:0:7,18:0,0:99,106:0,0
12	49079394	.	C	T	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||726|CCNT1|protein_coding|CODING|ENST00000261900||1),INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER||||107|KANSL2|protein_coding|CODING|ENST00000550870||1),UPSTREAM(MODIFIER||||132|KANSL2|protein_coding|CODING|ENST00000550931||1),UPSTREAM(MODIFIER||||152|KANSL2|protein_coding|CODING|ENST00000357861||1),UPSTREAM(MODIFIER||||454|KANSL2|protein_coding|CODING|ENST00000553086||1),UPSTREAM(MODIFIER||||492|KANSL2|protein_coding|CODING|ENST00000420613||1),UPSTREAM(MODIFIER||||675|KANSL2|protein_coding|CODING|ENST00000550347||1),UPSTREAM(MODIFIER||||68|KANSL2|protein_coding|CODING|ENST00000548304||1),UPSTREAM(MODIFIER|||||KANSL2|nonsense_mediated_decay|CODING|ENST00000546701||1),UPSTREAM(MODIFIER|||||KANSL2|nonsense_mediated_decay|CODING|ENST00000547582||1),UPSTREAM(MODIFIER|||||KANSL2|retained_intron|CODING|ENST00000548254||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	45:1:0:0:0,0:44,45:0,0:0,0	132:0:0:0:0,0:123,123:0,0:9,9
12	49303230	.	G	A	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||210|ARF3|protein_coding|CODING|ENST00000398092|4|1),INTRON(MODIFIER||||372|CCDC65|protein_coding|CODING|ENST00000552942|2|1),INTRON(MODIFIER||||484|CCDC65|protein_coding|CODING|ENST00000320516|2|1),INTRON(MODIFIER||||497|CCDC65|protein_coding|CODING|ENST00000266984|2|1),INTRON(MODIFIER|||||CCDC65|nonsense_mediated_decay|CODING|ENST00000547861|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:0:0:0:0,0:0,0:35,35:0,0	85:0:0:0:8,8:0,0:77,79:0,0
12	49509855	.	T	C	.	PASS	NT=ref;QSS=25;QSS_NT=25;SGT=TT->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	102:0:0:0:0,0:0,5:0,0:102,131	216:2:0:0:0,0:16,28:0,0:198,269
12	49604049	.	A	G	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||TUBA1C|processed_transcript|CODING|ENST00000549554||1),INTRON(MODIFIER|||||TUBA1C|processed_transcript|CODING|ENST00000550574|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	48:0:0:0:47,47:0,0:1,1:0,0	99:2:0:0:88,91:1,1:7,7:1,1
12	49604056	.	A	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||TUBA1C|processed_transcript|CODING|ENST00000549554||1),INTRON(MODIFIER|||||TUBA1C|processed_transcript|CODING|ENST00000550574|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	44:0:0:0:43,43:0,0:0,0:1,1	98:4:0:0:87,91:0,0:0,0:7,7
12	49707138	.	G	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-161H23.9|antisense|NON_CODING|ENST00000553259|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	22:0:13:0:0,0:0,0:22,22:0,0	48:0:35:0:7,7:0,0:41,42:0,0
12	50935559	.	T	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1576|DIP2B|protein_coding|CODING|ENST00000301180|1|1),INTRON(MODIFIER|||||DIP2B|retained_intron|CODING|ENST00000549620|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:0:0:0:0,0:1,1:0,0:36,37	102:2:0:0:0,0:8,9:1,2:91,92
12	50970323	.	G	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1576|DIP2B|protein_coding|CODING|ENST00000301180|1|1),INTRON(MODIFIER|||||DIP2B|retained_intron|CODING|ENST00000549620|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:3:0:0:0,0:0,0:29,32:0,0	107:1:0:0:5,5:1,1:100,103:0,0
12	53681183	.	A	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=EXON(MODIFIER|||||ESPL1|retained_intron|CODING|ENST00000549154|1|1),INTRON(MODIFIER||||2120|ESPL1|protein_coding|CODING|ENST00000257934|18|1),INTRON(MODIFIER||||2120|ESPL1|protein_coding|CODING|ENST00000552462|18|1),INTRON(MODIFIER|||||ESPL1|nonsense_mediated_decay|CODING|ENST00000552671|18|1),INTRON(MODIFIER|||||ESPL1|retained_intron|CODING|ENST00000535123|6|1),INTRON(MODIFIER|||||ESPL1|retained_intron|CODING|ENST00000553016|4|1),UPSTREAM(MODIFIER|||||ESPL1|retained_intron|CODING|ENST00000552600||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	45:1:0:0:43,45:0,0:1,1:0,0	105:4:0:0:93,97:2,3:6,7:0,0
12	54532437	.	T	C	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	42:0:0:0:0,0:0,0:0,0:42,42	94:0:0:0:0,0:7,7:0,0:87,87
12	56700641	.	A	G	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||101|CNPY2|protein_coding|CODING|ENST00000551286||1),DOWNSTREAM(MODIFIER||||167|CNPY2|protein_coding|CODING|ENST00000551475||1),DOWNSTREAM(MODIFIER||||182|CNPY2|protein_coding|CODING|ENST00000273308||1),DOWNSTREAM(MODIFIER|||||CNPY2|nonsense_mediated_decay|CODING|ENST00000546466||1),DOWNSTREAM(MODIFIER|||||CNPY2|processed_transcript|CODING|ENST00000551720||1),DOWNSTREAM(MODIFIER|||||CNPY2|retained_intron|CODING|ENST00000546937||1),INTRON(MODIFIER||||104|RP11-977G19.10|protein_coding|CODING|ENST00000547423|3|1),INTRON(MODIFIER||||262|RP11-977G19.10|protein_coding|CODING|ENST00000549318|6|1),INTRON(MODIFIER||||81|RP11-977G19.10|protein_coding|CODING|ENST00000548360|3|1),INTRON(MODIFIER|||||RP11-977G19.11|antisense|NON_CODING|ENST00000549565|1|1),INTRON(MODIFIER|||||RP11-977G19.11|antisense|NON_CODING|ENST00000549860|1|1),UPSTREAM(MODIFIER|||||RP11-977G19.12|antisense|NON_CODING|ENST00000546789||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:2:0:0:38,40:0,0:0,0:0,0	119:0:0:0:112,112:1,1:6,6:0,0
12	57057935	.	T	C	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||124|PTGES3|protein_coding|CODING|ENST00000456859||1),DOWNSTREAM(MODIFIER||||139|PTGES3|protein_coding|CODING|ENST00000448157||1),EXON(MODIFIER|||||PTGES3|processed_transcript|CODING|ENST00000537473|8|1),EXON(MODIFIER|||||PTGES3|processed_transcript|CODING|ENST00000552354|5|1),UTR_3_PRIME(MODIFIER||||127|PTGES3|protein_coding|CODING|ENST00000436399|7|1),UTR_3_PRIME(MODIFIER||||130|PTGES3|protein_coding|CODING|ENST00000414274|7|1),UTR_3_PRIME(MODIFIER||||160|PTGES3|protein_coding|CODING|ENST00000262033|8|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	42:0:0:0:0,0:0,0:0,0:42,43	122:3:0:0:0,0:10,17:0,0:109,109
12	57057936	.	G	A	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||124|PTGES3|protein_coding|CODING|ENST00000456859||1),DOWNSTREAM(MODIFIER||||139|PTGES3|protein_coding|CODING|ENST00000448157||1),EXON(MODIFIER|||||PTGES3|processed_transcript|CODING|ENST00000537473|8|1),EXON(MODIFIER|||||PTGES3|processed_transcript|CODING|ENST00000552354|5|1),UTR_3_PRIME(MODIFIER||||127|PTGES3|protein_coding|CODING|ENST00000436399|7|1),UTR_3_PRIME(MODIFIER||||130|PTGES3|protein_coding|CODING|ENST00000414274|7|1),UTR_3_PRIME(MODIFIER||||160|PTGES3|protein_coding|CODING|ENST00000262033|8|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	41:0:0:0:0,0:0,0:41,42:0,0	120:3:0:0:10,17:0,0:107,107:0,0
12	57058052	.	T	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||124|PTGES3|protein_coding|CODING|ENST00000456859||1),EXON(MODIFIER|||||PTGES3|processed_transcript|CODING|ENST00000537473|8|1),EXON(MODIFIER|||||PTGES3|processed_transcript|CODING|ENST00000552354|5|1),UTR_3_PRIME(MODIFIER||||127|PTGES3|protein_coding|CODING|ENST00000436399|7|1),UTR_3_PRIME(MODIFIER||||130|PTGES3|protein_coding|CODING|ENST00000414274|7|1),UTR_3_PRIME(MODIFIER||||139|PTGES3|protein_coding|CODING|ENST00000448157|7|1),UTR_3_PRIME(MODIFIER||||160|PTGES3|protein_coding|CODING|ENST00000262033|8|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:1:0:0:0,0:0,0:0,0:33,34	125:2:0:0:0,0:7,13:0,0:116,116
12	57096843	.	C	A	.	PASS	NT=ref;QSS=23;QSS_NT=23;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	45:0:0:0:0,0:45,45:0,0:0,0	109:3:0:0:9,9:97,100:0,0:0,0
12	57483255	.	T	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->GT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER||||322|NAB2|protein_coding|CODING|ENST00000357680|1|1),INTRON(MODIFIER||||461|NAB2|protein_coding|CODING|ENST00000342556|1|1),INTRON(MODIFIER||||525|NAB2|protein_coding|CODING|ENST00000300131|1|1),INTRON(MODIFIER|||||NAB2|processed_transcript|CODING|ENST00000554718|1|1),INTRON(MODIFIER|||||NAB2|processed_transcript|CODING|ENST00000555857|1|1),UPSTREAM(MODIFIER|||||NAB2|retained_intron|CODING|ENST00000554839||1),UPSTREAM(MODIFIER|||||TMEM194A|processed_transcript|CODING|ENST00000553654||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	44:5:0:0:0,0:1,2:1,3:37,39	81:4:0:0:1,1:2,2:16,18:58,60
12	58066271	.	T	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||RP11-571M6.1|processed_pseudogene|NON_CODING|ENST00000480739||1),UPSTREAM(MODIFIER|||||snoU13|snoRNA|NON_CODING|ENST00000459425||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:4:0:0:0,2:0,0:0,0:28,31	82:4:0:0:0,0:7,8:1,2:70,76
12	58724991	rs199943725	C	T	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=58724991;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	17:0:0:0:0,0:17,17:0,1:0,0	53:1:0:0:0,0:41,47:0,0:11,13
12	59697581	.	A	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:0:0:0:31,31:0,0:0,0:0,0	89:1:0:0:77,77:0,0:0,0:11,12
12	61150492	.	T	C	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:1:0:0:0,0:0,0:0,0:36,37	91:1:0:0:0,0:13,13:0,0:77,78
12	61920678	.	C	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:0:0:0:0,0:36,36:0,0:0,0	97:0:0:0:9,9:88,88:0,0:0,0
12	61984770	rs201803938	T	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->AT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=61984770;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	47:0:0:0:0,1:0,0:0,0:47,47	130:2:0:0:6,8:0,0:0,0:122,124
12	61984803	rs200136106	T	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=61984803;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	50:0:0:0:0,0:0,1:0,0:50,50	129:0:0:0:0,0:7,9:0,0:122,122
12	62060069	.	G	T	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:2:0:0:0,0:0,1:37,38:0,0	120:1:0:0:0,0:0,0:114,115:5,6
12	63331943	.	A	G	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||Y_RNA|misc_RNA|NON_CODING|ENST00000516851||1),INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER||||514|PPM1H|protein_coding|CODING|ENST00000228705||1),UPSTREAM(MODIFIER|||||PPM1H|processed_transcript|CODING|ENST00000548414||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	47:3:0:0:44,46:0,1:0,0:0,0	99:0:0:0:92,92:0,0:7,8:0,0
12	63794347	.	C	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	61:0:0:0:0,0:61,62:0,0:0,0	106:6:0:0:0,0:94,98:1,1:5,7
12	63794355	.	T	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	55:0:0:0:0,0:0,0:2,2:53,54	103:5:0:0:0,0:0,0:10,12:88,92
12	64726716	.	T	G	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||183|C12orf56|protein_coding|CODING|ENST00000543259|2|1),INTRON(MODIFIER||||462|C12orf56|protein_coding|CODING|ENST00000333722|2|1),INTRON(MODIFIER||||623|C12orf56|protein_coding|CODING|ENST00000543942|2|1),INTRON(MODIFIER|||||RPS11P6|processed_transcript|NON_CODING|ENST00000535684|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:0:0:0:0,0:0,0:0,0:37,37	110:2:0:0:0,0:0,0:9,9:99,101
12	64936725	.	G	A	.	PASS	NT=ref;QSS=32;QSS_NT=32;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	65:0:0:0:0,0:0,0:65,65:0,0	113:2:0:0:8,8:0,0:103,105:0,0
12	65069136	.	C	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||238|RASSF3|protein_coding|CODING|ENST00000336061|2|1),INTRON(MODIFIER||||238|RASSF3|protein_coding|CODING|ENST00000542104|1|1),INTRON(MODIFIER|||||RASSF3|nonsense_mediated_decay|CODING|ENST00000283172|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:0:0:0:0,0:31,33:0,0:0,0	96:1:0:0:5,7:90,94:0,0:0,0
12	66140175	.	G	A	.	PASS	NT=ref;QSS=23;QSS_NT=23;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:0:0:0:0,0:0,0:40,40:0,0	73:0:0:0:10,10:0,0:63,63:0,0
12	66642156	.	A	G	.	PASS	NT=ref;QSS=26;QSS_NT=26;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||535|IRAK3|protein_coding|CODING|ENST00000457197||1),DOWNSTREAM(MODIFIER|||||RP11-335I12.2|antisense|NON_CODING|ENST00000536412||1),UTR_3_PRIME(MODIFIER||||596|IRAK3|protein_coding|CODING|ENST00000261233|12|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	45:0:0:0:45,45:0,0:0,0:0,0	94:0:0:0:80,80:0,0:14,14:0,0
12	66642158	.	A	T	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||535|IRAK3|protein_coding|CODING|ENST00000457197||1),DOWNSTREAM(MODIFIER|||||RP11-335I12.2|antisense|NON_CODING|ENST00000536412||1),UTR_3_PRIME(MODIFIER||||596|IRAK3|protein_coding|CODING|ENST00000261233|12|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	44:0:0:0:44,44:0,0:0,0:0,0	96:0:0:0:90,90:0,0:0,0:6,6
12	67051250	.	C	T	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1055|GRIP1|protein_coding|CODING|ENST00000538211|1|1),INTRON(MODIFIER||||1076|GRIP1|protein_coding|CODING|ENST00000398016|1|1),INTRON(MODIFIER||||1113|GRIP1|protein_coding|CODING|ENST00000286445|1|1),INTRON(MODIFIER||||1128|GRIP1|protein_coding|CODING|ENST00000359742|1|1),INTRON(MODIFIER||||119|GRIP1|protein_coding|CODING|ENST00000539540|1|1),INTRON(MODIFIER||||14|GRIP1|protein_coding|CODING|ENST00000538373|1|1),INTRON(MODIFIER||||187|GRIP1|protein_coding|CODING|ENST00000541947|1|1),INTRON(MODIFIER||||209|GRIP1|protein_coding|CODING|ENST00000545666|1|1),INTRON(MODIFIER||||875|GRIP1|protein_coding|CODING|ENST00000540433|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	42:0:0:0:0,0:42,42:0,0:0,0	111:0:0:0:0,0:105,106:0,0:6,6
12	67222998	.	G	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:0:0:0:0,0:0,0:29,29:0,0	104:0:0:0:0,0:0,0:93,93:11,11
12	70334402	.	C	G	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||250|C12orf28|protein_coding|CODING|ENST00000535034|4|1),INTRON(MODIFIER||||275|C12orf28|protein_coding|CODING|ENST00000299350|6|1),INTRON(MODIFIER||||614|C12orf28|protein_coding|CODING|ENST00000552032|19|1),INTRON(MODIFIER|||||C12orf28|nonsense_mediated_decay|CODING|ENST00000547771|17|1),INTRON(MODIFIER|||||RP11-611E13.2|processed_transcript|NON_CODING|ENST00000549419|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:0:0:0:1,1:35,36:0,0:0,0	97:1:0:0:0,1:87,90:9,10:0,0
12	71126486	.	G	A	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||197|PTPRR|protein_coding|CODING|ENST00000550661|3|1),INTRON(MODIFIER||||412|PTPRR|protein_coding|CODING|ENST00000440835|2|1),INTRON(MODIFIER||||412|PTPRR|protein_coding|CODING|ENST00000549308|3|1),INTRON(MODIFIER||||451|PTPRR|protein_coding|CODING|ENST00000378778|3|1),INTRON(MODIFIER||||545|PTPRR|protein_coding|CODING|ENST00000342084|5|1),INTRON(MODIFIER||||657|PTPRR|protein_coding|CODING|ENST00000283228|6|1),INTRON(MODIFIER|||||PTPRR|nonsense_mediated_decay|CODING|ENST00000551219|2|1),INTRON(MODIFIER|||||PTPRR|processed_transcript|CODING|ENST00000548220|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:0:0:0:0,0:0,0:38,38:0,0	67:2:0:0:4,4:0,0:61,63:0,0
12	71160093	.	G	C	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=GG->CG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER||||545|PTPRR|protein_coding|CODING|ENST00000342084|1|1),INTRON(MODIFIER||||657|PTPRR|protein_coding|CODING|ENST00000283228|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	51:0:0:0:0,0:0,2:51,51:0,0	104:0:0:0:0,0:10,20:94,94:0,0
12	73989377	.	C	G	.	PASS	NT=ref;QSS=25;QSS_NT=25;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-314D7.4|lincRNA|NON_CODING|ENST00000549058|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	50:0:0:0:0,0:50,52:0,0:0,0	105:2:0:0:0,0:94,96:9,9:0,0
12	74693189	.	G	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-81H3.2|lincRNA|NON_CODING|ENST00000551726|4|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:1:0:0:0,0:0,1:28,28:0,0	116:0:0:0:11,11:0,0:105,105:0,0
12	75009415	rs113997186	A	G	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=75009415;GMAF=0.0664;dbSNPBuildID=132;SSR=0;SAO=0;VP=05000000000507001e000100;WGT=1;VC=SNV;ASP;VLD;G5A;G5;KGPhase1;KGPilot123;KGPROD;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	81:3:0:0:77,99:0,0:1,2:0,0	287:31:0:0:244,354:0,0:12,12:0,1
12	78930367	rs60376512	G	T	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-171L9.1|processed_transcript|NON_CODING|ENST00000546865|1|1),INTRON(MODIFIER|||||RP11-171L9.1|processed_transcript|NON_CODING|ENST00000547089|1|1);RSPOS=78930367;GMAF=0.0321;dbSNPBuildID=129;SSR=0;SAO=0;VP=050100000005030116000100;WGT=1;VC=SNV;SLO;ASP;G5A;G5;GNO;KGPhase1;KGPROD;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:0:0:0:0,0:0,0:35,35:0,0	77:0:0:0:0,0:0,0:69,70:8,8
12	81213543	.	T	A	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||233|LIN7A|protein_coding|CODING|ENST00000552864|4|1),INTRON(MODIFIER|||||LIN7A|nonsense_mediated_decay|CODING|ENST00000261203|5|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:0:0:0:0,0:0,0:0,0:34,34	102:2:0:0:9,9:0,0:0,0:91,94
12	81407842	.	G	A	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||92|ACSS3|protein_coding|CODING|ENST00000549175|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:0:0:0:0,0:0,0:38,38:1,1	82:1:0:0:7,7:0,0:74,75:0,0
12	81629716	.	C	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||368|ACSS3|protein_coding|CODING|ENST00000548324|8|1),INTRON(MODIFIER||||685|ACSS3|protein_coding|CODING|ENST00000261206|13|1),INTRON(MODIFIER||||686|ACSS3|protein_coding|CODING|ENST00000548058|13|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	45:0:0:0:0,0:44,44:0,0:1,1	79:0:0:0:0,0:75,76:0,0:4,4
12	81887533	rs5004210	C	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1152|PPFIA2|protein_coding|CODING|ENST00000443686|1|1),INTRON(MODIFIER||||1156|PPFIA2|protein_coding|CODING|ENST00000407050|1|1),INTRON(MODIFIER||||120|PPFIA2|protein_coding|CODING|ENST00000547623|4|1),INTRON(MODIFIER||||1232|PPFIA2|protein_coding|CODING|ENST00000549325|2|1),INTRON(MODIFIER||||1235|PPFIA2|protein_coding|CODING|ENST00000333447|1|1),INTRON(MODIFIER||||1236|PPFIA2|protein_coding|CODING|ENST00000552948|3|1),INTRON(MODIFIER||||1251|PPFIA2|protein_coding|CODING|ENST00000548586|3|1),INTRON(MODIFIER||||1257|PPFIA2|protein_coding|CODING|ENST00000549396|4|1),INTRON(MODIFIER||||146|PPFIA2|protein_coding|CODING|ENST00000551442|3|1),INTRON(MODIFIER|||||PPFIA2|nonsense_mediated_decay|CODING|ENST00000550584|3|1),INTRON(MODIFIER|||||PPFIA2|processed_transcript|CODING|ENST00000545296|2|1),INTRON(MODIFIER|||||PPFIA2|processed_transcript|CODING|ENST00000548453|1|1),INTRON(MODIFIER|||||PPFIA2|retained_intron|CODING|ENST00000552020|1|1);RSPOS=81887533;dbSNPBuildID=113;SSR=0;SAO=0;VP=050000080005000102000100;GENEINFO=PPFIA2:8499;WGT=1;VC=SNV;INT;ASP;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:0:1:0:0,0:31,31:0,0:0,0	93:1:4:0:9,9:82,83:1,1:0,0
12	82320839	.	C	T	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:0:0:0:0,0:37,37:0,0:0,0	109:0:0:0:1,1:95,96:0,0:13,13
12	82740460	.	G	A	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||180|CCDC59|protein_coding|CODING|ENST00000552377|2|1),UPSTREAM(MODIFIER|||||AC083811.1|miRNA|NON_CODING|ENST00000408194||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:0:0:0:0,0:0,0:33,33:0,0	103:1:0:0:10,10:0,0:91,92:1,1
12	84823345	.	T	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:0:0:0:0,0:0,0:0,0:30,31	104:1:0:0:0,0:8,8:0,0:95,96
12	84908079	.	C	T	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:1:0:0:0,0:38,39:0,0:0,0	105:1:0:0:0,0:99,100:0,0:5,5
12	85369487	.	C	A	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	42:0:0:0:0,0:42,42:0,0:0,0	99:1:0:0:11,11:87,88:0,0:0,0
12	85975134	.	A	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:0:0:0:31,31:1,1:0,0:0,0	95:0:0:0:85,85:0,0:0,0:10,10
12	86065922	.	G	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:1:0:0:0,0:0,0:31,32:0,0	87:4:0:0:0,0:0,0:77,81:6,6
12	86718887	.	A	T	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||478|MGAT4C|protein_coding|CODING|ENST00000550460|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	42:1:0:0:41,42:0,0:0,0:0,0	81:0:0:0:75,75:0,0:0,0:6,6
12	87134346	.	C	T	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||AC010196.1|miRNA|NON_CODING|ENST00000577262||1),INTRON(MODIFIER|||||RP11-202H2.1|lincRNA|NON_CODING|ENST00000550014|1|1),INTRON(MODIFIER|||||RP11-202H2.1|lincRNA|NON_CODING|ENST00000551921|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:1:0:0:0,0:37,38:0,0:0,0	94:0:0:0:0,0:86,86:0,0:8,8
12	87421156	.	A	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:0:0:0:35,35:0,0:0,0:0,0	116:2:0:0:103,104:0,0:0,0:11,12
12	89241531	.	A	G	.	PASS	NT=ref;QSS=33;QSS_NT=33;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	67:0:0:0:67,79:0,0:0,0:0,0	174:13:0:0:151,178:0,0:10,16:0,0
12	90757809	.	C	T	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:2:0:0:0,0:36,38:0,0:0,0	119:1:0:0:0,0:111,113:0,0:7,7
12	91652417	.	A	C	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:1:0:0:37,38:0,0:0,0:0,0	96:2:0:0:86,88:8,8:0,0:0,0
12	92103824	.	G	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	43:1:0:0:0,0:0,0:42,47:0,0	102:0:0:0:0,0:5,7:97,108:0,0
12	93581015	.	A	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-511B23.2|antisense|NON_CODING|ENST00000547432|3|1),INTRON(MODIFIER|||||RP11-511B23.2|antisense|NON_CODING|ENST00000549930|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:1:0:0:32,33:0,0:0,0:0,0	103:0:0:0:96,96:7,7:0,0:0,0
12	93874568	.	A	G	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||139|MRPL42|protein_coding|CODING|ENST00000393128|4|1),INTRON(MODIFIER||||142|MRPL42|protein_coding|CODING|ENST00000361630|5|1),INTRON(MODIFIER||||142|MRPL42|protein_coding|CODING|ENST00000549982|4|1),INTRON(MODIFIER||||142|MRPL42|protein_coding|CODING|ENST00000552217|4|1),INTRON(MODIFIER|||||MRPL42|nonsense_mediated_decay|CODING|ENST00000358678|5|1),INTRON(MODIFIER|||||MRPL42|nonsense_mediated_decay|CODING|ENST00000549561|3|1),INTRON(MODIFIER|||||MRPL42|nonsense_mediated_decay|CODING|ENST00000551396|5|1),INTRON(MODIFIER|||||MRPL42|processed_transcript|CODING|ENST00000547098|4|1),INTRON(MODIFIER|||||MRPL42|processed_transcript|CODING|ENST00000552326|3|1),INTRON(MODIFIER|||||MRPL42|retained_intron|CODING|ENST00000548545|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:0:0:0:36,37:0,0:0,0:0,0	91:1:0:0:85,86:0,0:5,5:0,0
12	94696750	.	A	G	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||165|CCDC41|protein_coding|CODING|ENST00000552632||1),INTRON(MODIFIER||||1568|PLXNC1|protein_coding|CODING|ENST00000258526|28|1),INTRON(MODIFIER||||307|PLXNC1|protein_coding|CODING|ENST00000545312|9|1),INTRON(MODIFIER||||615|PLXNC1|protein_coding|CODING|ENST00000547057|13|1),INTRON(MODIFIER|||||PLXNC1|nonsense_mediated_decay|CODING|ENST00000549217|13|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:0:0:0:33,33:1,1:0,0:0,0	108:0:0:0:98,98:0,0:10,10:0,0
12	95437015	.	T	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||467|NR2C1|protein_coding|CODING|ENST00000393101|9|1),INTRON(MODIFIER||||483|NR2C1|protein_coding|CODING|ENST00000330677|9|1),INTRON(MODIFIER||||603|NR2C1|protein_coding|CODING|ENST00000333003|9|1),INTRON(MODIFIER|||||NR2C1|processed_transcript|CODING|ENST00000545833|8|1),INTRON(MODIFIER|||||NR2C1|processed_transcript|CODING|ENST00000547594|3|1),INTRON(MODIFIER|||||NR2C1|retained_intron|CODING|ENST00000546416|1|1),INTRON(MODIFIER|||||NR2C1|retained_intron|CODING|ENST00000552861|8|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:0:0:0:0,0:0,0:1,1:34,38	102:0:0:0:7,7:0,0:0,0:95,96
12	95505828	.	A	G	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1205|FGD6|protein_coding|CODING|ENST00000549499|9|1),INTRON(MODIFIER||||1374|FGD6|protein_coding|CODING|ENST00000546711|9|1),INTRON(MODIFIER||||1430|FGD6|protein_coding|CODING|ENST00000343958|9|1),INTRON(MODIFIER||||278|FGD6|protein_coding|CODING|ENST00000551521|2|1),INTRON(MODIFIER|||||FGD6|nonsense_mediated_decay|CODING|ENST00000451107|8|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:0:0:0:36,36:0,0:0,0:0,0	81:4:0:0:71,74:0,1:6,6:0,1
12	96941564	.	G	A	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||3096|C12orf55|protein_coding|CODING|ENST00000524981|14|1),INTRON(MODIFIER||||804|C12orf55|protein_coding|CODING|ENST00000298953|14|1),INTRON(MODIFIER|||||C12orf55|processed_transcript|CODING|ENST00000554108|2|1),UPSTREAM(MODIFIER|||||C12orf55|retained_intron|CODING|ENST00000554821||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:0:0:0:0,0:0,0:40,40:0,0	104:2:0:0:9,9:1,1:90,90:2,4
12	98603611	rs186040453	G	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-690J15.1|lincRNA|NON_CODING|ENST00000548344|1|1);RSPOS=98603611;GMAF=0.109;dbSNPBuildID=135;SSR=0;SAO=0;VP=050000000005000016000100;WGT=1;VC=SNV;ASP;KGPhase1;KGPROD;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	28:0:0:0:0,0:0,0:28,28:0,0	80:4:0:0:6,10:1,2:69,72:0,0
12	100688162	.	T	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||SCYL2|retained_intron|CODING|ENST00000549486||1),INTRON(MODIFIER||||680|SCYL2|protein_coding|CODING|ENST00000549687|3|1),INTRON(MODIFIER||||75|SCYL2|protein_coding|CODING|ENST00000548392|2|1),INTRON(MODIFIER||||929|SCYL2|protein_coding|CODING|ENST00000360820|3|1),INTRON(MODIFIER|||||SCYL2|processed_transcript|CODING|ENST00000550067|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:2:0:0:0,0:0,0:1,3:31,47	61:3:0:0:0,0:5,7:0,2:53,92
12	101498450	rs10860679	A	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||475|ANO4|protein_coding|CODING|ENST00000299222|21|1),INTRON(MODIFIER||||475|ANO4|protein_coding|CODING|ENST00000550015|9|1),INTRON(MODIFIER||||920|ANO4|protein_coding|CODING|ENST00000392979|21|1),INTRON(MODIFIER||||955|ANO4|protein_coding|CODING|ENST00000392977|22|1);RSPOS=101498450;dbSNPBuildID=120;SSR=0;SAO=0;VP=050100080001040102000100;GENEINFO=ANO4:121601;WGT=1;VC=SNV;SLO;INT;VLD;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:0:0:0:30,30:0,0:0,0:0,0	74:6:3:0:63,65:0,0:0,0:5,9
12	101776011	.	T	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||2785|UTP20|protein_coding|CODING|ENST00000261637|58|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	27:0:0:0:0,0:0,0:0,0:27,27	94:0:0:0:0,0:9,9:0,0:85,86
12	101776025	.	A	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||2785|UTP20|protein_coding|CODING|ENST00000261637|58|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	27:0:0:0:27,27:0,0:0,0:0,0	89:3:0:0:79,80:0,0:7,10:0,0
12	101866335	.	T	C	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||RNA5SP367|rRNA|NON_CODING|ENST00000516557||1),INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER||||248|SPIC|protein_coding|CODING|ENST00000299272||1),UPSTREAM(MODIFIER||||248|SPIC|protein_coding|CODING|ENST00000551346||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	50:1:0:0:0,0:0,0:0,0:49,52	103:0:0:0:0,0:8,10:0,0:95,98
12	103605124	.	G	C	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:1:0:0:0,0:0,0:37,38:0,0	119:0:0:0:0,0:5,5:114,114:0,0
12	105700501	.	A	G	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||C12orf75|processed_transcript|CODING|ENST00000548458|1|1),INTRON(MODIFIER|||||RP11-474B16.1|antisense|NON_CODING|ENST00000549251|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	43:1:0:0:42,43:0,0:0,0:0,0	99:1:0:0:89,90:0,0:9,13:0,0
12	105700516	.	T	A	.	PASS	NT=ref;QSS=23;QSS_NT=23;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||C12orf75|processed_transcript|CODING|ENST00000548458|1|1),INTRON(MODIFIER|||||RP11-474B16.1|antisense|NON_CODING|ENST00000549251|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	44:0:0:0:0,0:0,0:0,0:44,44	93:1:0:0:9,12:0,0:0,0:83,85
12	105700561	.	C	A	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||C12orf75|processed_transcript|CODING|ENST00000548458|1|1),INTRON(MODIFIER|||||RP11-474B16.1|antisense|NON_CODING|ENST00000549251|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	42:0:0:0:0,0:42,42:0,0:0,0	86:2:0:0:9,13:75,77:0,1:0,0
12	105706617	.	C	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||C12orf75|processed_transcript|CODING|ENST00000548458|1|1),INTRON(MODIFIER|||||RP11-474B16.1|antisense|NON_CODING|ENST00000549251|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:0:0:0:0,0:39,39:0,0:0,0	110:3:0:0:5,10:102,104:0,0:0,0
12	109229732	.	C	T	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||MIR619|miRNA|NON_CODING|ENST00000384890||1),INTRON(MODIFIER||||1049|SSH1|protein_coding|CODING|ENST00000326495|2|1),INTRON(MODIFIER||||692|SSH1|protein_coding|CODING|ENST00000551165|2|1),INTRON(MODIFIER||||737|SSH1|protein_coding|CODING|ENST00000360239|2|1),INTRON(MODIFIER|||||SSH1|nonsense_mediated_decay|CODING|ENST00000548522|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:0:0:0:0,0:36,37:0,0:0,0	104:3:0:0:1,1:88,92:0,0:12,13
12	109537144	.	T	C	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=EXON(MODIFIER|||||UNG|retained_intron|CODING|ENST00000540158|3|1),INTRON(MODIFIER||||304|UNG|protein_coding|CODING|ENST00000336865|2|1),INTRON(MODIFIER||||313|UNG|protein_coding|CODING|ENST00000242576|3|1),INTRON(MODIFIER|||||UNG|nonsense_mediated_decay|CODING|ENST00000446767|2|1),INTRON(MODIFIER|||||UNG|nonsense_mediated_decay|CODING|ENST00000539287|2|1),UPSTREAM(MODIFIER||||61|UNG|protein_coding|CODING|ENST00000542183||1),UPSTREAM(MODIFIER|||||RP11-443D10.2|processed_transcript|NON_CODING|ENST00000542331||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:0:0:0:0,0:0,0:0,0:35,35	79:0:0:0:0,0:7,7:0,0:72,72
12	110878477	.	G	A	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||ARPC3|processed_transcript|CODING|ENST00000471641||1),DOWNSTREAM(MODIFIER|||||ARPC3|processed_transcript|CODING|ENST00000549408||1),DOWNSTREAM(MODIFIER|||||ARPC3|retained_intron|CODING|ENST00000475777||1),INTRON(MODIFIER||||158|RP11-478C19.2|protein_coding|CODING|ENST00000550231|1|1),INTRON(MODIFIER||||178|ARPC3|protein_coding|CODING|ENST00000228825|2|1),INTRON(MODIFIER||||83|ARPC3|protein_coding|CODING|ENST00000547365|1|1),INTRON(MODIFIER||||98|ARPC3|protein_coding|CODING|ENST00000426440|2|1),INTRON(MODIFIER|||||ARPC3|retained_intron|CODING|ENST00000548878|1|1),UPSTREAM(MODIFIER|||||ARPC3|processed_transcript|CODING|ENST00000488941||1),UPSTREAM(MODIFIER|||||ARPC3|retained_intron|CODING|ENST00000467622||1),UPSTREAM(MODIFIER|||||ARPC3|retained_intron|CODING|ENST00000476566||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	45:0:0:0:0,0:0,0:45,45:0,0	86:5:0:0:7,8:0,1:73,81:1,1
12	112046865	.	G	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:1:0:0:0,0:0,0:33,34:0,0	93:6:0:0:4,4:0,0:83,89:0,1
12	115204929	.	T	G	.	PASS	NT=ref;QSS=25;QSS_NT=25;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP4-601P9.2|lincRNA|NON_CODING|ENST00000551875|4|1),UPSTREAM(MODIFIER|||||RP4-601P9.1|lincRNA|NON_CODING|ENST00000547876||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	49:0:0:0:0,0:0,0:0,0:49,49	115:2:0:0:0,0:0,0:8,8:105,109
12	117871678	.	T	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER|||||NOS1|processed_transcript|CODING|ENST00000549189|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	44:4:0:0:0,0:1,3:0,0:39,43	105:10:0:0:0,0:16,22:0,0:79,85
12	118116957	.	T	A	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||921|KSR2|protein_coding|CODING|ENST00000425217|4|1),INTRON(MODIFIER||||950|KSR2|protein_coding|CODING|ENST00000339824|4|1),UPSTREAM(MODIFIER||||435|KSR2|protein_coding|CODING|ENST00000302438||1),UPSTREAM(MODIFIER|||||KSR2|processed_transcript|CODING|ENST00000545002||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:0:0:0:0,0:0,0:0,0:39,39	103:1:0:0:9,9:0,0:0,0:93,94
12	119145987	rs200994474	G	A	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=119145987;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:5:1:0:0,1:0,0:35,76:0,0	176:38:0:0:13,27:0,1:125,284:0,0
12	119271946	.	T	C	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=TT->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=DOWNSTREAM(MODIFIER|||||RNA5SP374|rRNA|NON_CODING|ENST00000362939||1),INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||RP11-357K6.2|lincRNA|NON_CODING|ENST00000538783||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	42:0:0:0:0,0:0,0:0,0:42,42	82:1:0:0:0,0:6,6:0,0:75,77
12	119301246	.	A	G	.	PASS	NT=ref;QSS=23;QSS_NT=23;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-357K6.3|lincRNA|NON_CODING|ENST00000544515|4|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	46:0:0:0:46,47:0,0:0,0:0,0	100:0:0:0:93,93:0,0:7,7:0,0
12	119393481	.	A	G	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:0:0:0:39,39:0,0:0,0:0,0	89:0:0:0:83,84:0,0:6,6:0,0
12	120214991	.	A	G	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||CIT|retained_intron|CODING|ENST00000488203||1),INTRON(MODIFIER||||108|CIT|protein_coding|CODING|ENST00000536325|2|1),INTRON(MODIFIER||||2027|CIT|protein_coding|CODING|ENST00000261833|13|1),INTRON(MODIFIER||||2069|CIT|protein_coding|CODING|ENST00000392521|13|1),INTRON(MODIFIER|||||CIT|processed_transcript|CODING|ENST00000537607|3|1),INTRON(MODIFIER|||||CIT|retained_intron|CODING|ENST00000545913|5|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:0:0:0:37,41:0,0:0,0:0,0	111:5:0:0:100,104:0,0:6,7:0,0
12	121693062	.	T	C	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||343|CAMKK2|protein_coding|CODING|ENST00000545538|3|1),INTRON(MODIFIER||||490|CAMKK2|protein_coding|CODING|ENST00000446440|9|1),INTRON(MODIFIER||||498|CAMKK2|protein_coding|CODING|ENST00000538733|9|1),INTRON(MODIFIER||||533|CAMKK2|protein_coding|CODING|ENST00000392473|9|1),INTRON(MODIFIER||||541|CAMKK2|protein_coding|CODING|ENST00000337174|9|1),INTRON(MODIFIER||||541|CAMKK2|protein_coding|CODING|ENST00000412367|9|1),INTRON(MODIFIER||||545|CAMKK2|protein_coding|CODING|ENST00000347034|9|1),INTRON(MODIFIER||||556|CAMKK2|protein_coding|CODING|ENST00000392474|8|1),INTRON(MODIFIER||||588|CAMKK2|protein_coding|CODING|ENST00000324774|9|1),INTRON(MODIFIER||||588|CAMKK2|protein_coding|CODING|ENST00000404169|9|1),INTRON(MODIFIER|||||CAMKK2|nonsense_mediated_decay|CODING|ENST00000402834|8|1),INTRON(MODIFIER|||||CAMKK2|processed_transcript|CODING|ENST00000535524|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	24:2:0:0:0,0:0,0:0,0:22,30	64:5:0:0:0,0:12,15:0,0:47,69
12	121816390	.	G	A	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||43|ANAPC5|protein_coding|CODING|ENST00000536837|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:0:0:0:0,0:0,0:35,36:0,0	129:2:0:0:6,7:0,0:121,124:0,0
12	122804604	.	G	A	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||RP11-512M8.3|processed_pseudogene|NON_CODING|ENST00000537123||1),INTRON(MODIFIER||||1013|CLIP1|protein_coding|CODING|ENST00000545889|12|1),INTRON(MODIFIER||||1392|CLIP1|protein_coding|CODING|ENST00000537178|15|1),INTRON(MODIFIER||||1427|CLIP1|protein_coding|CODING|ENST00000302528|15|1),INTRON(MODIFIER||||1427|CLIP1|protein_coding|CODING|ENST00000358808|16|1),INTRON(MODIFIER||||1438|CLIP1|protein_coding|CODING|ENST00000540338|16|1),INTRON(MODIFIER|||||CLIP1|nonsense_mediated_decay|CODING|ENST00000361654|15|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:0:0:0:0,0:0,0:40,40:0,0	99:0:0:0:6,7:0,0:93,93:0,0
12	123294107	.	T	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||445|CCDC62|protein_coding|CODING|ENST00000392440|5|1),INTRON(MODIFIER||||445|CCDC62|protein_coding|CODING|ENST00000537566|6|1),INTRON(MODIFIER||||682|CCDC62|protein_coding|CODING|ENST00000392441|10|1),INTRON(MODIFIER||||684|CCDC62|protein_coding|CODING|ENST00000253079|10|1),INTRON(MODIFIER|||||CCDC62|nonsense_mediated_decay|CODING|ENST00000341952|10|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	53:1:0:0:0,0:1,1:1,1:50,51	110:1:0:0:0,0:7,7:2,3:100,101
12	123392560	.	T	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:1:0:0:0,0:0,0:0,0:32,35	102:17:0:0:0,1:4,5:0,0:81,97
12	123760352	.	A	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER||||115|CDK2AP1|protein_coding|CODING|ENST00000261692||1),UPSTREAM(MODIFIER||||87|CDK2AP1|protein_coding|CODING|ENST00000535979||1),UPSTREAM(MODIFIER||||87|CDK2AP1|protein_coding|CODING|ENST00000544658||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:1:0:0:38,39:0,0:0,0:0,0	109:1:0:0:100,102:0,1:0,0:8,8
12	124857777	rs78211269	A	G	.	PASS	NT=ref;QSS=33;QSS_NT=33;SGT=AA->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER||||1450|NCOR2|protein_coding|CODING|ENST00000458234|21|1),INTRON(MODIFIER||||161|NCOR2|protein_coding|CODING|ENST00000448614|3|1),INTRON(MODIFIER||||2075|NCOR2|protein_coding|CODING|ENST00000404121|19|1),INTRON(MODIFIER||||2458|NCOR2|protein_coding|CODING|ENST00000404621|19|1),INTRON(MODIFIER||||2459|NCOR2|protein_coding|CODING|ENST00000397355|19|1),INTRON(MODIFIER||||2504|NCOR2|protein_coding|CODING|ENST00000429285|19|1),INTRON(MODIFIER||||2514|NCOR2|protein_coding|CODING|ENST00000405201|19|1),INTRON(MODIFIER||||2521|NCOR2|protein_coding|CODING|ENST00000356219|20|1);RSPOS=124857777;dbSNPBuildID=132;SSR=16;SAO=0;VP=050000080001000102000100;GENEINFO=NCOR2:9612;WGT=1;VC=SNV;INT;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	75:0:0:0:75,75:0,0:0,1:0,0	107:1:0:0:98,99:0,0:8,10:0,0
12	125398267	.	A	C	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=AA->AC;SOMATIC;TQSS=2;TQSS_NT=2;EFF=EXON(MODIFIER|||||UBC|nonsense_mediated_decay|CODING|ENST00000536834|2|1),EXON(MODIFIER|||||UBC|processed_transcript|CODING|ENST00000536661|2|1),EXON(MODIFIER|||||UBC|processed_transcript|CODING|ENST00000544481|2|1),SYNONYMOUS_CODING(LOW|SILENT|gtT/gtG|V17|121|UBC|protein_coding|CODING|ENST00000535859|2|1),SYNONYMOUS_CODING(LOW|SILENT|gtT/gtG|V17|133|UBC|protein_coding|CODING|ENST00000540700|2|1),SYNONYMOUS_CODING(LOW|SILENT|gtT/gtG|V17|135|UBC|protein_coding|CODING|ENST00000546271|2|1),SYNONYMOUS_CODING(LOW|SILENT|gtT/gtG|V17|148|UBC|protein_coding|CODING|ENST00000535131|2|1),SYNONYMOUS_CODING(LOW|SILENT|gtT/gtG|V17|153|UBC|protein_coding|CODING|ENST00000544656|2|1),SYNONYMOUS_CODING(LOW|SILENT|gtT/gtG|V17|154|UBC|protein_coding|CODING|ENST00000541645|2|1),SYNONYMOUS_CODING(LOW|SILENT|gtT/gtG|V17|159|UBC|protein_coding|CODING|ENST00000540351|2|1),SYNONYMOUS_CODING(LOW|SILENT|gtT/gtG|V17|168|UBC|protein_coding|CODING|ENST00000541272|2|1),SYNONYMOUS_CODING(LOW|SILENT|gtT/gtG|V17|305|UBC|protein_coding|CODING|ENST00000538617|3|1),SYNONYMOUS_CODING(LOW|SILENT|gtT/gtG|V17|533|UBC|protein_coding|CODING|ENST00000535460|2|1),SYNONYMOUS_CODING(LOW|SILENT|gtT/gtG|V17|609|UBC|protein_coding|CODING|ENST00000541046|2|1),SYNONYMOUS_CODING(LOW|SILENT|gtT/gtG|V17|609|UBC|protein_coding|CODING|ENST00000546120|2|1),SYNONYMOUS_CODING(LOW|SILENT|gtT/gtG|V17|60|UBC|protein_coding|CODING|ENST00000542416|3|1),SYNONYMOUS_CODING(LOW|SILENT|gtT/gtG|V17|685|UBC|protein_coding|CODING|ENST00000339647|2|1),SYNONYMOUS_CODING(LOW|SILENT|gtT/gtG|V17|685|UBC|protein_coding|CODING|ENST00000536769|1|1),UPSTREAM(MODIFIER|||||MIR5188|miRNA|NON_CODING|ENST00000583467||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	48:0:0:0:48,48:0,0:0,0:0,0	102:2:0:0:95,97:5,5:0,0:0,0
12	126816972	.	C	T	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:1:0:0:0,0:39,40:0,0:0,0	77:1:0:0:0,0:71,72:0,0:5,5
12	127243659	.	T	C	.	PASS	NT=ref;QSS=24;QSS_NT=24;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-173C20.2|lincRNA|NON_CODING|ENST00000536517|2|1),INTRON(MODIFIER|||||RP11-173C20.2|lincRNA|NON_CODING|ENST00000540684|1|1),INTRON(MODIFIER|||||RP11-173C20.2|lincRNA|NON_CODING|ENST00000542248|3|1),INTRON(MODIFIER|||||RP11-173C20.2|lincRNA|NON_CODING|ENST00000545508|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	49:0:0:0:0,0:0,0:0,0:49,49	109:3:0:0:0,0:8,8:0,0:98,101
12	127764228	.	C	A	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-955H22.1|lincRNA|NON_CODING|ENST00000536330|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:0:0:0:0,0:37,37:0,0:0,0	91:1:0:0:10,10:80,81:0,0:0,0
12	128407263	.	T	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||LINC00507|lincRNA|NON_CODING|ENST00000540882|1|1),INTRON(MODIFIER|||||LINC00507|lincRNA|NON_CODING|ENST00000542089|1|1),INTRON(MODIFIER|||||LINC00507|lincRNA|NON_CODING|ENST00000544645|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:0:0:0:0,0:0,0:0,0:33,33	83:0:0:0:1,1:0,0:5,5:77,77
12	128604650	.	G	A	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP13-653N12.2|lincRNA|NON_CODING|ENST00000541258|1|1),UPSTREAM(MODIFIER|||||RP13-653N12.1|lincRNA|NON_CODING|ENST00000536341||1),UPSTREAM(MODIFIER|||||RP13-653N12.1|lincRNA|NON_CODING|ENST00000540745||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	56:1:0:0:1,1:0,0:54,55:0,0	96:1:0:0:5,6:0,0:90,92:0,0
12	129148733	.	A	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1108|TMEM132C|protein_coding|CODING|ENST00000435159|4|1),INTRON(MODIFIER||||724|TMEM132C|protein_coding|CODING|ENST00000315208|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	51:2:0:0:48,49:0,1:1,1:0,0	124:4:0:0:113,118:1,1:6,6:0,0
12	129298777	rs111933142	G	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||SLC15A4|processed_transcript|CODING|ENST00000535272||1),INTRON(MODIFIER||||112|SLC15A4|protein_coding|CODING|ENST00000376740|2|1),INTRON(MODIFIER||||577|SLC15A4|protein_coding|CODING|ENST00000266771|2|1),INTRON(MODIFIER|||||SLC15A4|processed_transcript|CODING|ENST00000539703|2|1),INTRON(MODIFIER|||||SLC15A4|retained_intron|CODING|ENST00000366292|1|1),UPSTREAM(MODIFIER||||240|SLC15A4|protein_coding|CODING|ENST00000544112||1);RSPOS=129298777;dbSNPBuildID=132;SSR=0;SAO=0;VP=050000080005070102000100;GENEINFO=SLC15A4:121260;WGT=1;VC=SNV;INT;ASP;VLD;G5A;G5;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	50:1:0:0:1,1:0,0:48,50:0,0	145:2:0:0:11,11:0,0:132,139:0,0
12	129298815	rs111991699	C	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||SLC15A4|processed_transcript|CODING|ENST00000535272||1),INTRON(MODIFIER||||112|SLC15A4|protein_coding|CODING|ENST00000376740|2|1),INTRON(MODIFIER||||577|SLC15A4|protein_coding|CODING|ENST00000266771|2|1),INTRON(MODIFIER|||||SLC15A4|processed_transcript|CODING|ENST00000539703|2|1),INTRON(MODIFIER|||||SLC15A4|retained_intron|CODING|ENST00000366292|1|1),UPSTREAM(MODIFIER||||240|SLC15A4|protein_coding|CODING|ENST00000544112||1);RSPOS=129298815;dbSNPBuildID=132;SSR=0;SAO=0;VP=050000080005070102000100;GENEINFO=SLC15A4:121260;WGT=1;VC=SNV;INT;ASP;VLD;G5A;G5;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	48:2:0:0:0,0:45,48:1,1:0,0	146:9:0:0:0,0:128,140:9,11:0,0
12	129326030	rs142337963	A	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=129326030;dbSNPBuildID=134;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	50:0:0:0:47,48:1,2:1,1:1,1	101:3:2:0:77,77:8,10:0,0:13,14
12	129582983	.	C	G	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1099|TMEM132D|protein_coding|CODING|ENST00000422113|5|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:0:0:0:0,0:39,39:0,0:0,0	67:0:0:0:0,0:60,60:7,7:0,0
12	129728779	.	A	C	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1099|TMEM132D|protein_coding|CODING|ENST00000422113|4|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:0:0:0:38,40:0,0:0,0:0,0	83:0:0:0:78,83:5,5:0,0:0,0
12	129835863	.	A	G	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1099|TMEM132D|protein_coding|CODING|ENST00000422113|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:0:0:0:35,35:0,0:0,0:0,0	91:2:0:0:83,85:0,0:6,6:0,0
12	130877234	.	C	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||1052|RIMBP2|protein_coding|CODING|ENST00000261655||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	41:13:0:0:0,4:28,117:0,0:0,1	114:29:0:0:9,19:74,240:1,2:1,6
12	131498277	.	C	T	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||162|GPR133|protein_coding|CODING|ENST00000545900|5|1),INTRON(MODIFIER||||560|GPR133|protein_coding|CODING|ENST00000376682|4|1),INTRON(MODIFIER||||874|GPR133|protein_coding|CODING|ENST00000261654|12|1),INTRON(MODIFIER||||906|GPR133|protein_coding|CODING|ENST00000535015|13|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:0:0:0:0,0:36,36:0,0:0,0	89:1:0:0:0,0:81,81:0,1:7,7
12	131613454	.	G	C	.	PASS	NT=ref;QSS=24;QSS_NT=24;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||393|GPR133|protein_coding|CODING|ENST00000543617|7|1),INTRON(MODIFIER||||560|GPR133|protein_coding|CODING|ENST00000376682|12|1),INTRON(MODIFIER||||874|GPR133|protein_coding|CODING|ENST00000261654|20|1),INTRON(MODIFIER||||906|GPR133|protein_coding|CODING|ENST00000535015|21|1),INTRON(MODIFIER|||||GPR133|processed_transcript|CODING|ENST00000540207|1|1),INTRON(MODIFIER|||||GPR133|retained_intron|CODING|ENST00000446583|8|1),INTRON(MODIFIER|||||GPR133|retained_intron|CODING|ENST00000537489|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	51:4:0:0:0,0:0,0:47,53:0,0	99:8:0:0:0,0:10,11:80,98:1,1
12	131803087	rs78097404	G	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=131803087;dbSNPBuildID=132;SSR=16;SAO=0;VP=05010000000500010e000100;WGT=1;VC=SNV;SLO;ASP;GNO;KGPilot123;KGPROD;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:0:0:0:0,0:0,0:30,30:0,0	95:0:0:0:7,7:0,0:88,88:0,0
12	131814741	rs113272688	C	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=131814741;dbSNPBuildID=132;SSR=0;SAO=0;VP=050000000001000102000100;WGT=1;VC=SNV;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	19:2:38:0:0,0:17,21:0,0:0,0	44:2:57:0:0,0:33,36:0,0:9,9
12	132170479	.	C	T	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:0:0:0:0,0:38,40:0,0:0,0	98:3:0:0:0,0:88,95:0,0:7,9
12	132819457	rs73166882	C	G	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->CG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=DOWNSTREAM(MODIFIER|||||GALNT9|retained_intron|CODING|ENST00000424720||1),INTRON(MODIFIER||||354|GALNT9|protein_coding|CODING|ENST00000535228|2|1),INTRON(MODIFIER||||603|GALNT9|protein_coding|CODING|ENST00000328957|6|1);RSPOS=132819457;GMAF=0.0897;dbSNPBuildID=130;SSR=0;SAO=0;VP=05000000000507001e000100;WGT=1;VC=SNV;ASP;VLD;G5A;G5;KGPhase1;KGPilot123;KGPROD;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	62:0:0:0:0,0:62,63:0,1:0,0	113:1:0:0:0,0:103,108:9,12:0,0
12	132836582	rs79071783	G	A	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||603|GALNT9|protein_coding|CODING|ENST00000328957|4|1),INTRON(MODIFIER|||||GALNT9|processed_transcript|CODING|ENST00000535208|3|1),INTRON(MODIFIER|||||GALNT9|retained_intron|CODING|ENST00000424720|4|1),UPSTREAM(MODIFIER||||354|GALNT9|protein_coding|CODING|ENST00000535228||1);RSPOS=132836582;dbSNPBuildID=131;SSR=0;SAO=0;VP=050000000001000002000100;WGT=1;VC=SNV;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:1:1:0:0,0:0,0:38,41:0,0	71:1:1:0:7,7:0,0:63,64:0,0
12	132865459	.	G	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER||||603|GALNT9|protein_coding|CODING|ENST00000328957|1|1),INTRON(MODIFIER|||||GALNT9|retained_intron|CODING|ENST00000424720|1|1),UPSTREAM(MODIFIER|||||GALNT9|retained_intron|CODING|ENST00000540493||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	64:5:0:0:0,0:0,0:59,65:0,0	86:8:0:0:4,4:0,0:74,83:0,0
12	132974340	.	G	C	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->CG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	43:5:0:0:0,0:0,1:38,43:0,1	117:4:0:0:0,0:9,9:104,113:0,1
12	132974627	.	A	G	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	60:1:0:0:57,58:0,0:2,2:0,0	111:4:0:0:97,99:1,3:8,10:1,1
12	133022045	.	A	C	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	57:2:0:0:53,55:2,2:0,0:0,0	86:4:0:0:68,70:13,16:1,1:0,0
12	133040113	.	T	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||RP11-503G7.1|lincRNA|NON_CODING|ENST00000542627||1),DOWNSTREAM(MODIFIER|||||RP11-503G7.2|lincRNA|NON_CODING|ENST00000537742||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	53:4:0:0:0,0:1,3:0,0:48,75	145:18:5:0:0,0:10,20:0,0:117,201
12	133110030	.	A	T	.	PASS	NT=ref;QSS=24;QSS_NT=24;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1045|FBRSL1|protein_coding|CODING|ENST00000434748|4|1),INTRON(MODIFIER||||972|FBRSL1|protein_coding|CODING|ENST00000261673|5|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	56:1:0:0:52,52:0,1:3,3:0,0	99:5:0:0:86,89:1,2:2,4:5,5
12	133264748	.	G	A	.	PASS	NT=ref;QSS=27;QSS_NT=27;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||120|RP13-672B3.2|protein_coding|CODING|ENST00000537262|1|1),INTRON(MODIFIER||||160|PXMP2|protein_coding|CODING|ENST00000543589|1|1),INTRON(MODIFIER||||167|PXMP2|protein_coding|CODING|ENST00000545677|1|1),INTRON(MODIFIER||||195|PXMP2|protein_coding|CODING|ENST00000317479|1|1),INTRON(MODIFIER||||2297|POLE|protein_coding|CODING|ENST00000455752|1|1),UPSTREAM(MODIFIER||||110|PXMP2|protein_coding|CODING|ENST00000539093||1),UPSTREAM(MODIFIER||||191|PXMP2|protein_coding|CODING|ENST00000428960||1),UPSTREAM(MODIFIER||||2259|POLE|protein_coding|CODING|ENST00000535270||1),UPSTREAM(MODIFIER||||2286|POLE|protein_coding|CODING|ENST00000320574||1),UPSTREAM(MODIFIER|||||POLE|nonsense_mediated_decay|CODING|ENST00000537064||1),UPSTREAM(MODIFIER|||||POLE|retained_intron|CODING|ENST00000539357||1),UPSTREAM(MODIFIER|||||RP13-672B3.2|nonsense_mediated_decay|CODING|ENST00000540119||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	57:2:0:0:0,1:1,2:54,64:0,0	107:6:0:0:7,8:0,0:94,115:0,0
12	133264921	.	C	G	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||120|RP13-672B3.2|protein_coding|CODING|ENST00000537262|1|1),INTRON(MODIFIER||||160|PXMP2|protein_coding|CODING|ENST00000543589|1|1),INTRON(MODIFIER||||167|PXMP2|protein_coding|CODING|ENST00000545677|1|1),INTRON(MODIFIER||||195|PXMP2|protein_coding|CODING|ENST00000317479|1|1),INTRON(MODIFIER||||2297|POLE|protein_coding|CODING|ENST00000455752|1|1),UPSTREAM(MODIFIER||||110|PXMP2|protein_coding|CODING|ENST00000539093||1),UPSTREAM(MODIFIER||||191|PXMP2|protein_coding|CODING|ENST00000428960||1),UPSTREAM(MODIFIER||||2259|POLE|protein_coding|CODING|ENST00000535270||1),UPSTREAM(MODIFIER||||2286|POLE|protein_coding|CODING|ENST00000320574||1),UPSTREAM(MODIFIER|||||POLE|nonsense_mediated_decay|CODING|ENST00000537064||1),UPSTREAM(MODIFIER|||||POLE|retained_intron|CODING|ENST00000539357||1),UPSTREAM(MODIFIER|||||RP13-672B3.2|nonsense_mediated_decay|CODING|ENST00000540119||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	25:4:0:0:0,0:21,32:0,1:0,0	52:4:0:0:1,1:39,56:8,15:0,0
12	133801278	.	G	A	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||379|ANHX|protein_coding|CODING|ENST00000419717|6|1),INTRON(MODIFIER||||379|ANHX|protein_coding|CODING|ENST00000545940|5|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	50:2:0:0:0,0:0,0:48,53:0,0	89:6:0:0:4,5:0,0:79,86:0,1
13	19073696	rs200108389	A	G	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=19073696;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:1:0:0:38,39:0,0:0,0:0,0	105:4:0:0:93,100:0,0:8,13:0,1
13	19096921	.	G	C	.	PASS	NT=ref;QSS=25;QSS_NT=25;SGT=GG->CG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	60:0:0:0:0,0:0,1:60,64:0,0	132:2:0:0:0,0:10,14:120,125:0,0
13	19297755	rs77787350	A	C	.	PASS	NT=ref;QSS=25;QSS_NT=25;SGT=AA->AC;SOMATIC;TQSS=2;TQSS_NT=2;EFF=DOWNSTREAM(MODIFIER|||||GXYLT1P1|processed_pseudogene|NON_CODING|ENST00000446657||1),INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||CNN2P12|processed_pseudogene|NON_CODING|ENST00000330492||1),UPSTREAM(MODIFIER|||||RP11-38M15.3|lincRNA|NON_CODING|ENST00000444605||1);RSPOS=19297755;dbSNPBuildID=131;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	56:1:0:0:55,56:0,1:0,0:0,0	99:1:0:0:92,93:6,12:0,0:0,0
13	19350099	.	C	A	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	22:1:0:0:0,0:21,27:0,0:0,0	75:0:0:0:13,19:62,69:0,0:0,0
13	19374414	.	G	T	.	PASS	NT=ref;QSS=23;QSS_NT=23;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	47:2:0:0:0,0:0,1:45,46:0,0	109:1:0:0:0,0:0,0:99,100:9,9
13	19412396	.	C	T	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||ANKRD20A9P|unprocessed_pseudogene|NON_CODING|ENST00000457997|12|1),UPSTREAM(MODIFIER|||||RHOT1P3|processed_pseudogene|NON_CODING|ENST00000436571||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	46:1:0:0:0,0:44,45:1,1:0,0	96:2:0:0:0,0:86,88:0,0:8,8
13	19517723	.	A	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=DOWNSTREAM(MODIFIER|||||PHF2P2|processed_transcript|NON_CODING|ENST00000416576||1),DOWNSTREAM(MODIFIER|||||PHF2P2|unprocessed_pseudogene|NON_CODING|ENST00000444553||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	55:2:0:0:52,54:1,1:0,0:0,0	120:7:0:0:99,102:0,0:14,18:0,0
13	21500038	.	G	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||CNOT4P1|processed_pseudogene|NON_CODING|ENST00000417432||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:0:0:0:0,0:0,0:33,33:0,0	86:1:0:0:4,4:0,0:81,84:0,0
13	21581790	rs55978066	G	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1088|LATS2|protein_coding|CODING|ENST00000382592|2|1),INTRON(MODIFIER||||1088|LATS2|protein_coding|CODING|ENST00000542899|2|1),INTRON(MODIFIER|||||LATS2-AS1|antisense|NON_CODING|ENST00000422510|1|1),INTRON(MODIFIER|||||LATS2|processed_transcript|CODING|ENST00000472754|1|1);RSPOS=21581790;dbSNPBuildID=129;SSR=0;SAO=0;VP=050000080001000002000100;GENEINFO=LATS2:26524;WGT=1;VC=SNV;INT;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	18:0:0:0:0,0:0,0:18,23:0,0	39:1:0:0:7,7:0,0:31,36:0,0
13	21787754	.	T	A	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	43:0:0:0:0,0:0,0:0,0:43,43	113:1:0:0:9,9:0,0:0,1:103,103
13	23281939	.	G	T	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||DDX39AP1|processed_pseudogene|NON_CODING|ENST00000445147||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:0:0:0:0,0:0,0:39,39:0,0	104:1:0:0:0,0:0,0:89,89:14,15
13	24261490	rs75061534	A	T	.	PASS	NT=ref;QSS=23;QSS_NT=23;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=24261490;GMAF=0.0417;dbSNPBuildID=132;SSR=0;SAO=0;VP=050000000005050016000100;WGT=1;VC=SNV;ASP;VLD;G5;KGPhase1;KGPROD;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	51:0:0:0:51,51:0,0:0,0:0,0	121:1:0:0:114,115:1,1:0,0:5,5
13	24358503	rs201150193	C	T	.	PASS	NT=ref;QSS=26;QSS_NT=26;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||713|MIPEP|protein_coding|CODING|ENST00000382172|16|1);RSPOS=24358503;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000080005000002000100;WGT=1;VC=SNV;INT;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	51:0:0:0:0,0:51,51:0,0:0,0	110:0:0:0:0,0:102,102:1,1:7,7
13	24358504	.	C	G	.	PASS	NT=ref;QSS=26;QSS_NT=26;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||713|MIPEP|protein_coding|CODING|ENST00000382172|16|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	52:0:0:0:0,0:52,52:0,0:0,0	110:0:0:0:0,0:103,103:7,7:0,0
13	24358538	.	C	A	.	PASS	NT=ref;QSS=23;QSS_NT=23;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||713|MIPEP|protein_coding|CODING|ENST00000382172|16|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	45:0:0:0:0,0:45,45:0,0:0,0	100:0:0:0:7,7:93,93:0,0:0,0
13	24966034	.	A	G	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	53:2:0:0:51,52:0,0:0,0:0,0	108:4:0:0:96,99:0,0:8,13:0,0
13	24966065	rs147789691	A	G	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=24966065;GMAF=0.076;dbSNPBuildID=134;SSR=0;SAO=0;VP=050000000005000014000100;WGT=1;VC=SNV;ASP;KGPhase1;KGPROD	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	46:2:0:0:43,44:0,0:1,1:0,0	114:0:0:0:100,101:2,2:12,18:0,0
13	26323721	.	C	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1123|ATP8A2|protein_coding|CODING|ENST00000255283|24|1),INTRON(MODIFIER||||1188|ATP8A2|protein_coding|CODING|ENST00000381655|25|1),INTRON(MODIFIER|||||ATP8A2|nonsense_mediated_decay|CODING|ENST00000281620|25|1),INTRON(MODIFIER|||||ATP8A2|processed_transcript|CODING|ENST00000491840|11|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	26:1:0:0:0,0:25,26:0,0:0,0	105:1:0:0:14,14:90,91:0,0:0,0
13	27023130	.	A	T	.	PASS	NT=ref;QSS=26;QSS_NT=26;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	52:0:0:0:51,51:0,0:1,1:0,0	109:2:0:0:98,98:0,0:0,0:9,10
13	28230012	.	A	T	.	PASS	NT=ref;QSS=23;QSS_NT=23;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||122|POLR1D|protein_coding|CODING|ENST00000399697|2|1),INTRON(MODIFIER|||||POLR1D|processed_transcript|CODING|ENST00000465887|2|1),INTRON(MODIFIER|||||POLR1D|processed_transcript|CODING|ENST00000472179|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	20:0:0:0:20,20:0,0:0,0:0,0	121:0:0:0:93,93:0,0:0,0:28,28
13	29912496	.	G	C	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1379|MTUS2|protein_coding|CODING|ENST00000431530|5|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	44:1:0:0:0,0:0,0:42,43:1,1	100:3:0:0:0,0:11,11:86,88:0,1
13	31416493	.	A	G	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=AA->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	42:1:0:0:41,41:0,0:0,1:0,0	109:5:2:0:83,87:0,0:21,25:0,0
13	31947755	rs1409378	A	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=31947755;RV;dbSNPBuildID=88;SSR=0;SAO=0;VP=050100000001000002000100;WGT=1;VC=SNV;SLO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:2:0:0:32,34:0,0:0,0:0,0	104:0:0:0:97,98:0,0:1,1:6,6
13	32060033	.	C	G	.	PASS	NT=ref;QSS=75;QSS_NT=75;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:0:0:0:0,0:39,41:0,0:0,0	279:0:0:0:0,0:131,131:148,148:0,0
13	32158414	.	G	C	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	44:0:0:0:0,0:0,0:44,44:0,0	84:1:0:0:0,0:6,7:77,78:0,0
13	33036604	rs74557752	C	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||635|RP11-298P3.4|protein_coding|CODING|ENST00000380121|3|1),INTRON(MODIFIER||||655|N4BP2L2|protein_coding|CODING|ENST00000446957|5|1),INTRON(MODIFIER||||664|RP11-298P3.4|protein_coding|CODING|ENST00000503296|2|1),INTRON(MODIFIER||||708|N4BP2L2|protein_coding|CODING|ENST00000505213|6|1),INTRON(MODIFIER||||737|N4BP2L2|protein_coding|CODING|ENST00000357505|6|1),INTRON(MODIFIER||||737|N4BP2L2|protein_coding|CODING|ENST00000504114|5|1),INTRON(MODIFIER||||752|N4BP2L2|protein_coding|CODING|ENST00000399396|6|1),INTRON(MODIFIER|||||N4BP2L2|processed_transcript|CODING|ENST00000473025|2|1),INTRON(MODIFIER|||||N4BP2L2|retained_intron|CODING|ENST00000509076|2|1);RSPOS=33036604;GMAF=0.0623;dbSNPBuildID=132;SSR=0;SAO=0;VP=050000080001070014000100;GENEINFO=N4BP2L2:10443;WGT=1;VC=SNV;INT;VLD;G5A;G5;KGPhase1;KGPROD	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:0:0:0:0,0:34,34:0,0:0,0	105:0:0:0:0,0:93,93:1,1:11,11
13	33804406	.	C	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1113|STARD13|protein_coding|CODING|ENST00000336934|1|1),INTRON(MODIFIER||||605|STARD13|protein_coding|CODING|ENST00000567873|1|1),INTRON(MODIFIER|||||RP11-81F11.3|processed_transcript|NON_CODING|ENST00000344312|2|1),INTRON(MODIFIER|||||STARD13|processed_transcript|CODING|ENST00000487412|1|1),INTRON(MODIFIER|||||STARD13|processed_transcript|CODING|ENST00000498019|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:0:0:0:0,0:33,34:0,0:0,0	97:0:0:0:0,0:87,88:0,0:10,10
13	35204368	.	G	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||LINC00457|processed_transcript|NON_CODING|ENST00000440160|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:0:0:0:0,0:0,0:29,29:0,0	111:1:0:0:0,0:0,0:95,95:15,16
13	35363215	.	C	T	.	PASS	NT=ref;QSS=24;QSS_NT=24;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	51:2:0:0:2,2:47,49:0,0:0,0	93:1:0:0:2,3:81,81:0,0:9,9
13	35882703	rs182958047	G	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||2943|NBEA|protein_coding|CODING|ENST00000379939|35|1),INTRON(MODIFIER||||2946|NBEA|protein_coding|CODING|ENST00000310336|36|1),INTRON(MODIFIER||||2946|NBEA|protein_coding|CODING|ENST00000400445|35|1),INTRON(MODIFIER||||2946|NBEA|protein_coding|CODING|ENST00000540320|35|1);RSPOS=35882703;GMAF=0.2019;dbSNPBuildID=135;SSR=0;SAO=0;VP=050000080005000016000100;GENEINFO=NBEA:26960;WGT=1;VC=SNV;INT;ASP;KGPhase1;KGPROD;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:1:0:0:0,0:0,0:28,29:0,1	112:0:0:0:10,10:0,0:102,124:0,0
13	36059080	.	T	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||2943|NBEA|protein_coding|CODING|ENST00000379939|41|1),INTRON(MODIFIER||||2946|NBEA|protein_coding|CODING|ENST00000310336|42|1),INTRON(MODIFIER||||2946|NBEA|protein_coding|CODING|ENST00000400445|41|1),INTRON(MODIFIER||||2946|NBEA|protein_coding|CODING|ENST00000540320|41|1),INTRON(MODIFIER||||739|NBEA|protein_coding|CODING|ENST00000537702|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	27:0:0:0:0,0:0,0:0,0:27,27	109:1:0:0:11,11:0,0:0,0:97,98
13	37344666	.	A	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:1:0:0:33,34:0,0:0,0:0,0	77:0:0:0:70,71:0,0:0,0:7,7
13	38663390	rs9532162	C	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||LINC00571|lincRNA|NON_CODING|ENST00000434565|3|1);RSPOS=38663390;GMAF=0.2601;dbSNPBuildID=119;SSR=0;SAO=0;VP=050100000005040116000100;WGT=1;VC=SNV;SLO;ASP;VLD;GNO;KGPhase1;KGPROD;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:2:0:0:0,0:31,33:0,0:0,0	79:3:0:0:0,0:71,74:0,0:5,6
13	40864156	.	G	C	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:0:0:0:0,0:0,0:39,39:0,0	88:1:0:0:0,0:5,5:82,83:0,0
13	41475104	.	A	G	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER|||||TPTE2P5|processed_transcript|NON_CODING|ENST00000379515|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	50:5:0:0:45,51:0,2:0,1:0,0	88:9:0:0:70,84:0,0:9,11:0,0
13	44080561	.	T	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||643|ENOX1|protein_coding|CODING|ENST00000261488|2|1),INTRON(MODIFIER||||643|ENOX1|protein_coding|CODING|ENST00000412891|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	28:1:0:0:0,1:0,0:0,0:27,30	72:0:0:0:8,12:0,0:0,0:64,73
13	46736860	.	T	G	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||245|LCP1|protein_coding|CODING|ENST00000416500|1|1),INTRON(MODIFIER||||627|LCP1|protein_coding|CODING|ENST00000323076|1|1),INTRON(MODIFIER||||627|LCP1|protein_coding|CODING|ENST00000398576|4|1),INTRON(MODIFIER||||65|LCP1|protein_coding|CODING|ENST00000442275|5|1),INTRON(MODIFIER|||||LCP1|processed_transcript|CODING|ENST00000460190|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	50:0:0:0:0,0:1,1:0,0:49,50	85:3:0:0:0,2:0,0:5,6:77,82
13	50328642	.	C	T	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||521|KPNA3|protein_coding|CODING|ENST00000261667|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:0:0:0:0,0:37,37:0,0:0,0	81:0:0:0:0,0:71,71:0,0:10,10
13	50870351	.	C	T	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=CC->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER|||||DLEU1|processed_transcript|CODING|ENST00000461527|3|1),INTRON(MODIFIER|||||DLEU1|processed_transcript|CODING|ENST00000463474|2|1),INTRON(MODIFIER|||||DLEU1|processed_transcript|CODING|ENST00000467721|2|1),INTRON(MODIFIER|||||DLEU1|processed_transcript|CODING|ENST00000468168|2|1),INTRON(MODIFIER|||||DLEU1|processed_transcript|CODING|ENST00000468522|2|1),INTRON(MODIFIER|||||DLEU1|processed_transcript|CODING|ENST00000469127|1|1),INTRON(MODIFIER|||||DLEU1|processed_transcript|CODING|ENST00000473075|2|1),INTRON(MODIFIER|||||DLEU1|processed_transcript|CODING|ENST00000475913|1|1),INTRON(MODIFIER|||||DLEU1|processed_transcript|CODING|ENST00000476738|1|1),INTRON(MODIFIER|||||DLEU1|processed_transcript|CODING|ENST00000483444|1|1),INTRON(MODIFIER|||||DLEU1|processed_transcript|CODING|ENST00000484529|2|1),INTRON(MODIFIER|||||DLEU1|processed_transcript|CODING|ENST00000485007|1|1),INTRON(MODIFIER|||||DLEU1|processed_transcript|CODING|ENST00000486895|1|1),INTRON(MODIFIER|||||DLEU1|processed_transcript|CODING|ENST00000490577|2|1),INTRON(MODIFIER|||||DLEU1|processed_transcript|CODING|ENST00000491341|2|1),INTRON(MODIFIER|||||DLEU1|processed_transcript|CODING|ENST00000491615|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	42:0:0:0:0,0:42,42:0,0:0,1	96:4:0:0:1,1:85,86:0,0:6,15
13	50870382	.	A	T	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=AA->AT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER|||||DLEU1|processed_transcript|CODING|ENST00000461527|3|1),INTRON(MODIFIER|||||DLEU1|processed_transcript|CODING|ENST00000463474|2|1),INTRON(MODIFIER|||||DLEU1|processed_transcript|CODING|ENST00000467721|2|1),INTRON(MODIFIER|||||DLEU1|processed_transcript|CODING|ENST00000468168|2|1),INTRON(MODIFIER|||||DLEU1|processed_transcript|CODING|ENST00000468522|2|1),INTRON(MODIFIER|||||DLEU1|processed_transcript|CODING|ENST00000469127|1|1),INTRON(MODIFIER|||||DLEU1|processed_transcript|CODING|ENST00000473075|2|1),INTRON(MODIFIER|||||DLEU1|processed_transcript|CODING|ENST00000475913|1|1),INTRON(MODIFIER|||||DLEU1|processed_transcript|CODING|ENST00000476738|1|1),INTRON(MODIFIER|||||DLEU1|processed_transcript|CODING|ENST00000483444|1|1),INTRON(MODIFIER|||||DLEU1|processed_transcript|CODING|ENST00000484529|2|1),INTRON(MODIFIER|||||DLEU1|processed_transcript|CODING|ENST00000485007|1|1),INTRON(MODIFIER|||||DLEU1|processed_transcript|CODING|ENST00000486895|1|1),INTRON(MODIFIER|||||DLEU1|processed_transcript|CODING|ENST00000490577|2|1),INTRON(MODIFIER|||||DLEU1|processed_transcript|CODING|ENST00000491341|2|1),INTRON(MODIFIER|||||DLEU1|processed_transcript|CODING|ENST00000491615|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	46:0:0:0:46,46:0,0:0,0:0,1	99:3:0:0:88,91:1,1:0,0:7,13
13	54058905	.	G	C	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:0:0:0:0,0:0,0:38,38:0,0	87:0:0:0:0,0:9,9:78,78:0,0
13	55083761	.	C	G	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:0:0:0:0,0:34,34:0,0:0,0	110:0:0:0:0,1:98,98:12,12:0,0
13	55146462	.	C	G	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:1:0:0:0,0:39,40:0,0:0,0	102:1:0:0:0,0:91,94:10,10:0,0
13	57553572	.	C	T	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	44:0:0:0:0,1:44,44:0,0:0,0	91:0:0:0:0,0:85,86:0,0:6,7
13	58965129	.	C	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:0:0:0:0,0:31,31:0,0:0,0	80:4:0:0:0,0:66,69:0,0:10,11
13	59951326	rs144597952	C	T	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=59951326;GMAF=0.0014;dbSNPBuildID=134;SSR=0;SAO=0;VP=050000000005000014000100;WGT=1;VC=SNV;ASP;KGPhase1;KGPROD	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	42:0:0:0:0,0:42,42:0,0:0,0	98:2:0:0:0,0:87,88:0,1:9,9
13	62033129	.	C	T	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:0:0:0:0,0:35,35:0,0:0,0	106:0:0:0:0,0:91,91:0,0:15,15
13	63406182	.	G	A	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:0:0:0:0,0:0,0:34,34:0,0	109:0:0:0:10,10:1,1:98,98:0,0
13	66845342	.	G	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||TRIM60P19|processed_pseudogene|NON_CODING|ENST00000452879||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:0:0:0:0,0:0,0:33,33:0,0	88:0:0:0:0,0:0,0:82,82:6,6
13	67754517	.	C	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1203|PCDH9|protein_coding|CODING|ENST00000328454|1|1),INTRON(MODIFIER||||1203|PCDH9|protein_coding|CODING|ENST00000456367|2|1),INTRON(MODIFIER||||1237|PCDH9|protein_coding|CODING|ENST00000377865|1|1),INTRON(MODIFIER||||1237|PCDH9|protein_coding|CODING|ENST00000544246|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:0:0:0:0,0:30,30:0,0:0,0	90:0:0:0:5,5:85,85:0,0:0,0
13	68517144	.	A	T	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	43:0:0:0:43,43:0,0:0,0:0,0	95:1:0:0:86,87:0,0:0,0:8,8
13	68669272	.	C	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:0:0:0:0,0:29,29:0,0:0,0	106:0:0:0:11,11:95,95:0,0:0,0
13	72143201	.	C	T	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||506|DACH1|protein_coding|CODING|ENST00000354591|2|1),INTRON(MODIFIER||||560|DACH1|protein_coding|CODING|ENST00000313174|3|1),INTRON(MODIFIER||||708|DACH1|protein_coding|CODING|ENST00000305425|4|1),INTRON(MODIFIER||||760|DACH1|protein_coding|CODING|ENST00000359684|5|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:0:0:0:0,0:33,33:0,0:0,0	98:2:0:0:0,1:82,83:0,0:14,14
13	73502144	.	C	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||757|PIBF1|protein_coding|CODING|ENST00000326291|13|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:3:0:0:0,0:29,32:0,0:0,0	114:19:0:0:1,1:85,108:0,0:9,10
13	73682625	.	T	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=DOWNSTREAM(MODIFIER|||||RNU6-66|snRNA|NON_CODING|ENST00000363397||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	43:7:0:0:0,0:0,2:0,0:36,71	122:15:0:0:0,0:6,17:0,0:101,164
13	74490360	.	A	C	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||402|KLF12|protein_coding|CODING|ENST00000377666|3|1),INTRON(MODIFIER||||402|KLF12|protein_coding|CODING|ENST00000377669|2|1),INTRON(MODIFIER|||||KLF12|processed_transcript|CODING|ENST00000472022|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:2:0:0:31,33:0,0:0,0:0,0	85:2:0:0:72,72:11,12:0,1:0,0
13	75488649	.	C	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:0:0:0:0,0:34,34:0,0:0,0	104:2:0:0:1,1:93,96:1,1:7,8
13	80280170	.	T	G	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=TT->GT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:0:0:0:0,0:0,0:0,0:34,34	106:3:0:0:0,0:0,0:6,6:97,100
13	80730185	rs200478241	A	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=AA->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=80730185;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	41:1:0:0:40,43:0,0:0,1:0,0	103:0:0:0:91,97:0,0:12,14:0,0
13	83579699	.	A	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:0:0:0:34,35:0,0:0,0:0,0	74:0:0:0:66,67:0,0:0,0:8,8
13	84504817	.	G	T	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:0:0:0:0,0:0,0:39,39:0,0	93:1:0:0:0,0:0,0:83,84:9,9
13	87075992	.	T	C	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:0:0:0:0,0:0,0:0,0:36,36	99:2:0:0:0,0:5,5:0,0:92,94
13	87605988	.	G	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	52:0:0:0:0,0:0,1:52,56:0,0	98:1:0:0:1,1:6,8:90,97:0,0
13	87606010	.	T	A	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	56:0:0:0:0,1:0,0:0,0:56,59	101:1:0:0:6,10:0,0:0,0:94,99
13	87606073	rs201613212	C	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->AC;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=87606073;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	41:2:0:0:0,1:39,41:0,0:0,0	109:1:0:0:9,13:99,100:0,0:0,0
13	87606099	rs199928308	A	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=AA->AT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=87606099;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	44:1:0:0:43,45:0,0:0,0:0,1	109:0:0:0:101,101:0,0:0,0:8,12
13	88828274	.	C	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-545P6.2|lincRNA|NON_CODING|ENST00000430214|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	28:0:0:0:0,0:28,28:0,0:0,0	96:1:0:0:10,10:85,86:0,0:0,0
13	92329871	.	C	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||572|GPC5|protein_coding|CODING|ENST00000377067|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	28:0:0:0:0,0:28,29:0,0:0,0	89:1:0:0:0,0:80,81:0,0:8,8
13	94599695	.	A	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||555|GPC6|protein_coding|CODING|ENST00000377047|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:0:0:0:30,30:0,0:0,0:0,0	87:1:0:0:77,79:0,0:0,0:9,9
13	95082076	.	A	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:3:0:0:26,31:0,0:0,0:0,0	87:6:0:0:70,85:1,1:10,10:0,0
13	95997269	.	C	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:0:0:0:0,0:35,35:0,0:0,0	95:2:0:0:0,0:87,87:6,8:0,0
13	98111045	.	A	C	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||183|RAP2A|protein_coding|CODING|ENST00000245304|1|1),INTRON(MODIFIER|||||RAP2A|nonsense_mediated_decay|CODING|ENST00000476869|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:1:0:0:35,36:0,0:0,0:0,0	92:1:0:0:79,80:12,12:0,0:0,0
13	99488724	.	T	A	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||DOCK9-AS1|antisense|NON_CODING|ENST00000439367||1),INTRON(MODIFIER||||1393|DOCK9|protein_coding|CODING|ENST00000448493|40|1),INTRON(MODIFIER||||2068|DOCK9|protein_coding|CODING|ENST00000376460|39|1),INTRON(MODIFIER||||2093|DOCK9|protein_coding|CODING|ENST00000339416|39|1),INTRON(MODIFIER||||249|DOCK9|protein_coding|CODING|ENST00000449796|6|1),INTRON(MODIFIER||||423|DOCK9|protein_coding|CODING|ENST00000340449|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	42:1:0:0:0,0:0,0:0,0:41,42	100:0:0:0:6,8:0,0:0,0:94,94
13	99894557	.	G	A	.	PASS	NT=ref;QSS=29;QSS_NT=29;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||134|UBAC2|protein_coding|CODING|ENST00000457666|2|1),INTRON(MODIFIER||||203|UBAC2|protein_coding|CODING|ENST00000355700|2|1),INTRON(MODIFIER||||309|UBAC2|protein_coding|CODING|ENST00000376440|2|1),INTRON(MODIFIER||||344|UBAC2|protein_coding|CODING|ENST00000403766|2|1),INTRON(MODIFIER|||||UBAC2|processed_transcript|CODING|ENST00000468067|3|1),INTRON(MODIFIER|||||UBAC2|processed_transcript|CODING|ENST00000473091|3|1),UPSTREAM(MODIFIER|||||UBAC2|processed_transcript|CODING|ENST00000494576||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	60:2:0:0:0,0:0,1:58,65:0,0	112:3:0:0:7,8:1,1:101,113:0,0
13	100295054	.	T	C	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||302|CLYBL|protein_coding|CODING|ENST00000444838|1|1),INTRON(MODIFIER||||306|CLYBL|protein_coding|CODING|ENST00000376354|1|1),INTRON(MODIFIER||||306|CLYBL|protein_coding|CODING|ENST00000376355|1|1),INTRON(MODIFIER||||340|CLYBL|protein_coding|CODING|ENST00000339105|1|1),INTRON(MODIFIER||||340|CLYBL|protein_coding|CODING|ENST00000376360|1|1),UPSTREAM(MODIFIER|||||MIR4306|miRNA|NON_CODING|ENST00000583390||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	44:1:0:0:0,0:0,0:0,0:43,45	101:1:0:0:0,0:9,9:0,0:91,92
13	100328362	.	G	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||302|CLYBL|protein_coding|CODING|ENST00000444838|1|1),INTRON(MODIFIER||||306|CLYBL|protein_coding|CODING|ENST00000376354|1|1),INTRON(MODIFIER||||306|CLYBL|protein_coding|CODING|ENST00000376355|1|1),INTRON(MODIFIER||||340|CLYBL|protein_coding|CODING|ENST00000339105|1|1),INTRON(MODIFIER||||340|CLYBL|protein_coding|CODING|ENST00000376360|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:0:0:0:0,0:0,0:31,31:0,0	80:0:0:0:4,4:0,0:76,76:0,0
13	100665298	.	G	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	42:0:0:0:0,0:1,1:41,41:0,0	108:2:0:0:0,0:9,9:97,97:0,0
13	101327022	.	G	A	.	PASS	NT=ref;QSS=30;QSS_NT=30;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||72|TMTC4|protein_coding|CODING|ENST00000475272|1|1),UPSTREAM(MODIFIER|||||TMTC4|retained_intron|CODING|ENST00000480433||1),UTR_5_PRIME(MODIFIER||||53|TMTC4|protein_coding|CODING|ENST00000423847|1|1),UTR_5_PRIME(MODIFIER||||630|TMTC4|protein_coding|CODING|ENST00000328767|1|1),UTR_5_PRIME(MODIFIER||||741|TMTC4|protein_coding|CODING|ENST00000376234|1|1),UTR_5_PRIME(MODIFIER||||760|TMTC4|protein_coding|CODING|ENST00000342624|1|1),UTR_5_PRIME(MODIFIER|||||TMTC4|nonsense_mediated_decay|CODING|ENST00000440120|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	55:0:0:0:0,0:0,0:55,55:0,0	98:1:0:0:14,14:0,0:83,84:0,0
13	107435685	.	T	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	51:3:0:0:0,0:1,1:0,0:47,53	99:4:0:0:0,0:0,0:6,15:89,95
13	107435749	.	G	T	.	PASS	NT=ref;QSS=29;QSS_NT=29;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	58:1:0:0:0,0:0,0:57,62:0,0	111:2:0:0:0,0:0,0:96,108:13,18
13	107435757	.	T	C	.	PASS	NT=ref;QSS=30;QSS_NT=30;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	62:1:0:0:0,0:0,0:1,1:60,65	112:5:0:0:0,0:13,17:0,0:94,109
13	107435776	.	T	G	.	PASS	NT=ref;QSS=29;QSS_NT=29;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	58:0:0:0:0,0:0,0:0,0:58,62	113:2:0:0:0,0:0,0:10,14:101,113
13	107435779	.	G	C	.	PASS	NT=ref;QSS=27;QSS_NT=27;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	56:1:0:0:0,0:0,0:55,60:0,0	112:2:0:0:0,0:9,12:101,113:0,0
13	107435808	.	T	C	.	PASS	NT=ref;QSS=30;QSS_NT=30;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	62:2:0:0:0,0:0,0:0,0:60,66	130:1:0:0:0,0:8,9:0,0:121,131
13	107854052	.	A	T	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||458|FAM155A|protein_coding|CODING|ENST00000375915|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:0:0:0:38,38:0,0:0,0:0,0	107:2:0:0:95,96:0,0:0,0:10,11
13	109709474	.	G	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||878|MYO16|protein_coding|CODING|ENST00000375857||1),INTRON(MODIFIER||||1858|MYO16|protein_coding|CODING|ENST00000356711|27|1),INTRON(MODIFIER||||1858|MYO16|protein_coding|CODING|ENST00000357550|26|1),INTRON(MODIFIER||||857|MYO16|protein_coding|CODING|ENST00000457511|15|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:0:0:0:0,0:0,0:32,32:0,0	106:1:0:0:7,7:0,1:98,99:0,0
13	110074698	.	G	T	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	43:0:0:0:0,0:0,0:43,43:0,0	82:0:0:0:0,0:0,0:77,77:5,5
13	110181278	.	C	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:0:0:0:0,0:30,31:1,1:0,0	94:8:0:0:11,13:75,81:0,0:0,0
13	110882638	rs113956214	T	G	.	PASS	NT=ref;QSS=23;QSS_NT=23;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1318|COL4A1|protein_coding|CODING|ENST00000397198|2|1),INTRON(MODIFIER||||1669|COL4A1|protein_coding|CODING|ENST00000375820|2|1),INTRON(MODIFIER||||519|COL4A1|protein_coding|CODING|ENST00000543140|2|1);RSPOS=110882638;dbSNPBuildID=132;SSR=0;SAO=0;VP=050000080001000002000100;GENEINFO=COL4A1:1282;WGT=1;VC=SNV;INT;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	44:0:0:0:0,0:0,0:0,0:44,44	85:3:0:0:0,0:0,0:8,8:74,77
13	111038163	.	T	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||104|COL4A2|protein_coding|CODING|ENST00000400163|4|1),INTRON(MODIFIER||||1712|COL4A2|protein_coding|CODING|ENST00000360467|4|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	67:7:0:0:0,0:0,2:1,2:59,117	112:10:0:0:0,0:10,18:0,2:92,194
13	111091149	.	A	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1712|COL4A2|protein_coding|CODING|ENST00000360467|15|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:0:0:0:31,31:0,0:0,0:0,0	99:4:0:0:81,84:13,13:1,1:0,1
13	112196716	.	T	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:1:0:0:0,0:0,0:0,0:35,36	84:2:0:0:6,6:1,2:2,2:73,75
13	112818291	.	G	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:3:0:0:0,0:0,1:35,40:0,0	55:5:0:0:0,0:2,4:43,51:5,6
13	112932891	.	C	G	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=CC->CG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	49:0:0:0:0,0:48,52:0,0:1,1	96:4:0:0:0,0:87,100:5,5:0,0
13	112963556	.	T	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||RP11-315H15.3|lincRNA|NON_CODING|ENST00000565936||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	95:3:0:0:0,0:2,4:1,2:89,92	163:10:0:0:0,1:9,17:0,0:144,155
13	113312010	rs35521560	G	A	.	PASS	NT=ref;QSS=29;QSS_NT=29;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||121|C13orf35|protein_coding|CODING|ENST00000356049|1|1);RSPOS=113312010;GMAF=0.1076;dbSNPBuildID=126;SSR=0;SAO=0;VP=050000080001040016000100;GENEINFO=C13orf35:400165;WGT=1;VC=SNV;INT;VLD;KGPhase1;KGPROD;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	77:3:0:0:0,2:0,0:73,91:1,1	112:6:0:0:6,10:0,1:99,129:1,3
13	113410363	.	T	G	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1134|ATP11A|protein_coding|CODING|ENST00000283558|1|1),INTRON(MODIFIER||||1134|ATP11A|protein_coding|CODING|ENST00000375645|1|1),INTRON(MODIFIER||||1134|ATP11A|protein_coding|CODING|ENST00000487903|1|1),INTRON(MODIFIER||||1191|ATP11A|protein_coding|CODING|ENST00000375630|1|1),INTRON(MODIFIER|||||ATP11A|processed_transcript|CODING|ENST00000466946|1|1),UPSTREAM(MODIFIER|||||ATP11A-AS1|antisense|NON_CODING|ENST00000446442||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	46:0:0:0:0,0:0,0:0,0:46,47	83:1:0:0:0,0:0,0:4,4:78,81
13	113592193	.	T	G	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1137|MCF2L|protein_coding|CODING|ENST00000375608|2|1),INTRON(MODIFIER||||1137|MCF2L|protein_coding|CODING|ENST00000442652|1|1),INTRON(MODIFIER|||||MCF2L|nonsense_mediated_decay|CODING|ENST00000442625|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	73:1:0:0:0,0:0,0:2,2:70,72	183:9:0:0:1,1:0,0:10,14:163,172
13	113592199	.	C	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1137|MCF2L|protein_coding|CODING|ENST00000375608|2|1),INTRON(MODIFIER||||1137|MCF2L|protein_coding|CODING|ENST00000442652|1|1),INTRON(MODIFIER|||||MCF2L|nonsense_mediated_decay|CODING|ENST00000442625|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	74:2:0:0:0,0:72,74:0,1:0,0	184:13:0:0:0,0:160,174:1,3:10,11
13	113723955	.	C	G	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->CG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=DOWNSTREAM(MODIFIER||||213|MCF2L|protein_coding|CODING|ENST00000423251||1),INTRON(MODIFIER||||1067|MCF2L|protein_coding|CODING|ENST00000421756|8|1),INTRON(MODIFIER||||1096|MCF2L|protein_coding|CODING|ENST00000397030|8|1),INTRON(MODIFIER||||1113|MCF2L|protein_coding|CODING|ENST00000434480|8|1),INTRON(MODIFIER||||1123|MCF2L|protein_coding|CODING|ENST00000423482|8|1),INTRON(MODIFIER||||1125|MCF2L|protein_coding|CODING|ENST00000535094|8|1),INTRON(MODIFIER||||1129|MCF2L|protein_coding|CODING|ENST00000375601|8|1),INTRON(MODIFIER||||1137|MCF2L|protein_coding|CODING|ENST00000375608|9|1),INTRON(MODIFIER||||1137|MCF2L|protein_coding|CODING|ENST00000442652|8|1),INTRON(MODIFIER||||1182|MCF2L|protein_coding|CODING|ENST00000375604|8|1),INTRON(MODIFIER||||984|MCF2L|protein_coding|CODING|ENST00000375597|8|1),INTRON(MODIFIER|||||MCF2L|processed_transcript|CODING|ENST00000475524|3|1),INTRON(MODIFIER|||||MCF2L|retained_intron|CODING|ENST00000464800|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	45:1:0:0:0,0:44,48:0,1:0,0	118:1:0:0:0,0:111,115:6,7:0,0
13	114089424	.	T	C	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||175|ADPRHL1|protein_coding|CODING|ENST00000413169|3|1),INTRON(MODIFIER||||272|ADPRHL1|protein_coding|CODING|ENST00000356501|2|1),INTRON(MODIFIER||||354|ADPRHL1|protein_coding|CODING|ENST00000375418|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:0:0:0:0,0:0,0:0,0:36,49	71:6:0:0:0,1:8,16:0,1:57,76
13	114429406	.	C	G	.	PASS	NT=ref;QSS=23;QSS_NT=23;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||563|GRK1|protein_coding|CODING|ENST00000335678|4|1),UPSTREAM(MODIFIER||||93|GRK1|protein_coding|CODING|ENST00000545304||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	24:1:0:0:0,0:23,27:0,0:0,0	38:3:0:0:0,0:27,29:8,10:0,0
13	114436801	.	T	C	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=TT->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER||||563|GRK1|protein_coding|CODING|ENST00000335678|6|1),INTRON(MODIFIER||||93|GRK1|protein_coding|CODING|ENST00000545304|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	59:7:0:0:0,0:0,1:1,1:51,58	115:22:0:0:0,0:4,5:0,0:89,114
13	114527059	.	G	A	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=GG->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER||||379|GAS6|protein_coding|CODING|ENST00000418959|4|1),INTRON(MODIFIER||||405|GAS6|protein_coding|CODING|ENST00000450766|6|1),INTRON(MODIFIER||||624|GAS6|protein_coding|CODING|ENST00000355761|10|1),INTRON(MODIFIER||||678|GAS6|protein_coding|CODING|ENST00000327773|12|1),INTRON(MODIFIER||||721|GAS6|protein_coding|CODING|ENST00000357389|12|1),INTRON(MODIFIER|||||GAS6-AS1|antisense|NON_CODING|ENST00000458001|1|1),INTRON(MODIFIER|||||GAS6|processed_transcript|CODING|ENST00000480426|4|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	66:13:0:0:0,2:0,0:53,87:0,0	107:24:0:0:5,8:1,2:77,127:0,0
13	115060117	.	A	G	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||UPF3A|processed_transcript|CODING|ENST00000479712||1),DOWNSTREAM(MODIFIER|||||UPF3A|processed_transcript|CODING|ENST00000481131||1),DOWNSTREAM(MODIFIER|||||UPF3A|processed_transcript|CODING|ENST00000484246||1),INTRON(MODIFIER||||443|UPF3A|protein_coding|CODING|ENST00000351487|6|1),INTRON(MODIFIER||||476|UPF3A|protein_coding|CODING|ENST00000375299|7|1),INTRON(MODIFIER|||||UPF3A|processed_transcript|CODING|ENST00000474056|4|1),INTRON(MODIFIER|||||UPF3A|processed_transcript|CODING|ENST00000475218|3|1),INTRON(MODIFIER|||||UPF3A|processed_transcript|CODING|ENST00000480362|6|1),INTRON(MODIFIER|||||UPF3A|processed_transcript|CODING|ENST00000493727|6|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	44:1:0:0:43,44:0,0:0,0:0,0	107:1:0:0:98,98:0,0:8,9:0,0
14	19014994	.	C	G	.	PASS	NT=ref;QSS=27;QSS_NT=27;SGT=CC->CG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	110:5:0:0:0,3:105,130:0,3:0,0	234:12:0:0:0,1:211,264:11,15:0,0
14	19086443	.	G	A	.	PASS	NT=ref;QSS=28;QSS_NT=28;SGT=GG->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	90:0:0:0:0,2:0,0:90,91:0,0	209:2:0:0:9,11:0,0:198,202:0,0
14	19112308	.	T	C	.	PASS	NT=ref;QSS=33;QSS_NT=33;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-754I20.1|processed_transcript|NON_CODING|ENST00000549208|1|1),INTRON(MODIFIER|||||RP11-754I20.1|processed_transcript|NON_CODING|ENST00000553170|1|1),INTRON(MODIFIER|||||RP11-754I20.1|transcribed_unprocessed_pseudogene|NON_CODING|ENST00000514609|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	76:1:0:0:0,0:0,0:0,0:75,76	209:1:0:0:0,0:9,10:0,0:199,200
14	19122155	rs202227017	T	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=DOWNSTREAM(MODIFIER|||||RP11-754I20.1|transcribed_unprocessed_pseudogene|NON_CODING|ENST00000514609||1),DOWNSTREAM(MODIFIER|||||U6|snRNA|NON_CODING|ENST00000384179||1),INTERGENIC(MODIFIER||||||||||1);RSPOS=19122155;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	80:1:0:0:0,0:1,2:0,0:78,80	233:2:0:0:0,0:9,14:1,1:221,227
14	19421226	.	C	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=DOWNSTREAM(MODIFIER|||||RP11-536C10.11|processed_pseudogene|NON_CODING|ENST00000546860||1),INTRON(MODIFIER|||||RP11-536C10.13|unprocessed_pseudogene|NON_CODING|ENST00000550518|1|1),INTRON(MODIFIER|||||RP11-536C10.8|processed_transcript|NON_CODING|ENST00000548793|8|1),INTRON(MODIFIER|||||RP11-536C10.8|processed_transcript|NON_CODING|ENST00000557216|5|1),UPSTREAM(MODIFIER|||||RP11-536C10.14|processed_pseudogene|NON_CODING|ENST00000549567||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:0:0:0:0,0:39,40:0,0:0,1	76:1:0:0:0,0:69,85:0,0:6,12
14	19454745	rs200714030	C	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-536C10.8|processed_transcript|NON_CODING|ENST00000548793|5|1),INTRON(MODIFIER|||||RP11-536C10.8|processed_transcript|NON_CODING|ENST00000557216|3|1);RSPOS=19454745;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	25:0:0:0:0,0:25,25:0,0:0,0	53:1:0:0:0,0:45,46:0,0:7,8
14	19553740	.	C	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->CG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=EXON(MODIFIER|||||POTEG|nonsense_mediated_decay|CODING|ENST00000547889|1|1),EXON(MODIFIER|||||POTEG|nonsense_mediated_decay|CODING|ENST00000552966|1|1),NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|tgC/tgG|C108W|508|POTEG|protein_coding|CODING|ENST00000409832|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	52:0:0:0:0,0:51,56:1,3:0,0	119:1:0:0:0,0:110,117:8,10:0,0
14	19592721	.	A	G	.	PASS	NT=ref;QSS=24;QSS_NT=24;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||508|POTEG|protein_coding|CODING|ENST00000409832||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	50:0:0:0:48,50:2,2:0,0:0,0	104:1:0:0:92,105:0,0:11,12:0,0
14	19599931	.	A	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	52:1:0:0:51,54:0,0:0,2:0,0	100:2:0:0:91,104:1,2:6,8:0,0
14	19669401	.	A	G	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||AL589743.2|lincRNA|NON_CODING|ENST00000413661||1),DOWNSTREAM(MODIFIER|||||AL589743.2|lincRNA|NON_CODING|ENST00000444357||1),DOWNSTREAM(MODIFIER|||||AL589743.2|lincRNA|NON_CODING|ENST00000550512||1),INTRON(MODIFIER|||||AL589743.1|lincRNA|NON_CODING|ENST00000412017|1|1),INTRON(MODIFIER|||||AL589743.1|lincRNA|NON_CODING|ENST00000418499|6|1),INTRON(MODIFIER|||||AL589743.1|lincRNA|NON_CODING|ENST00000427798|1|1),INTRON(MODIFIER|||||AL589743.1|lincRNA|NON_CODING|ENST00000431094|2|1),INTRON(MODIFIER|||||AL589743.1|lincRNA|NON_CODING|ENST00000432001|1|1),INTRON(MODIFIER|||||AL589743.1|lincRNA|NON_CODING|ENST00000438128|1|1),INTRON(MODIFIER|||||AL589743.1|lincRNA|NON_CODING|ENST00000441500|6|1),INTRON(MODIFIER|||||AL589743.1|lincRNA|NON_CODING|ENST00000548271|1|1),INTRON(MODIFIER|||||AL589743.1|lincRNA|NON_CODING|ENST00000548475|2|1),INTRON(MODIFIER|||||AL589743.1|lincRNA|NON_CODING|ENST00000553119|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:0:0:0:33,33:0,0:0,0:0,0	57:0:0:0:51,51:0,0:6,6:0,0
14	19775549	rs201357450	T	C	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-496I2.3|lincRNA|NON_CODING|ENST00000550717|2|1);RSPOS=19775549;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:0:0:0:0,0:0,0:0,0:37,38	118:0:0:0:0,0:8,9:0,1:110,111
14	20138652	.	G	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||RP11-597A11.3|processed_pseudogene|NON_CODING|ENST00000550646||1),INTRON(MODIFIER|||||RP11-536C10.20|unprocessed_pseudogene|NON_CODING|ENST00000548456|1|1),INTRON(MODIFIER|||||RP11-597A11.1|processed_transcript|NON_CODING|ENST00000548217|6|1),INTRON(MODIFIER|||||RP11-597A11.1|processed_transcript|NON_CODING|ENST00000548261|5|1),UPSTREAM(MODIFIER|||||RP11-536C10.21|processed_pseudogene|NON_CODING|ENST00000551999||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:0:0:0:0,0:0,0:31,39:0,0	94:2:0:0:7,8:0,0:85,96:0,0
14	20176671	.	T	G	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||OR11H2|unprocessed_pseudogene|NON_CODING|ENST00000556246||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	44:0:0:0:0,0:0,0:0,0:44,45	107:3:0:0:0,0:0,0:8,10:96,103
14	20258863	.	T	G	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||20|OR4N2|protein_coding|CODING|ENST00000557414|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:0:0:0:0,0:0,0:0,0:34,34	121:0:0:0:0,0:0,0:13,13:108,108
14	20280039	.	G	C	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||145|OR4N2|protein_coding|CODING|ENST00000557677|1|1),INTRON(MODIFIER||||20|OR4N2|protein_coding|CODING|ENST00000557414|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:0:0:0:0,0:0,0:33,34:0,0	87:0:0:0:0,0:8,8:79,79:0,0
14	20287393	.	C	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER||||145|OR4N2|protein_coding|CODING|ENST00000557677|1|1),INTRON(MODIFIER||||20|OR4N2|protein_coding|CODING|ENST00000557414|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	43:0:0:0:0,0:43,43:0,0:0,3	80:1:0:0:0,0:74,75:0,0:5,14
14	20681341	rs185847137	A	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=AA->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=DOWNSTREAM(MODIFIER|||||AL356019.1|miRNA|NON_CODING|ENST00000579172||1),DOWNSTREAM(MODIFIER|||||OR11H5P|unprocessed_pseudogene|NON_CODING|ENST00000554039||1),INTERGENIC(MODIFIER||||||||||1);RSPOS=20681341;GMAF=0.1346;dbSNPBuildID=135;SSR=0;SAO=0;VP=050000000005000014000100;WGT=1;VC=SNV;ASP;KGPhase1;KGPROD	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:0:0:0:35,35:0,0:0,0:0,0	98:2:0:0:89,94:0,0:7,7:0,0
14	21420002	.	G	A	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=GG->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER||||161|RNASE2|protein_coding|CODING|ENST00000304625||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:2:0:0:0,2:0,0:31,32:0,0	69:7:0:0:11,19:0,0:51,56:0,0
14	22079754	.	A	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||AE000658.27|processed_pseudogene|NON_CODING|ENST00000545592||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	46:1:0:0:44,45:0,0:1,1:0,0	98:2:0:0:89,92:0,0:7,8:0,0
14	23490032	.	C	A	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||SNORA73|snoRNA|NON_CODING|ENST00000516305||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	46:0:0:0:0,0:46,46:0,0:0,0	102:1:0:0:4,5:97,97:0,0:0,0
14	24211390	.	A	G	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=AA->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	51:1:0:0:50,52:0,0:0,1:0,0	102:0:0:0:95,95:0,0:7,9:0,0
14	24446540	.	A	T	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||57|DHRS4L2|protein_coding|CODING|ENST00000543805|1|1),INTRON(MODIFIER||||91|DHRS4L2|protein_coding|CODING|ENST00000534993|1|1),INTRON(MODIFIER|||||DHRS4-AS1|processed_transcript|NON_CODING|ENST00000558423|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:0:0:0:40,40:0,0:0,0:0,0	100:0:0:0:92,92:0,0:0,0:8,8
14	24999063	.	C	T	.	PASS	NT=ref;QSS=23;QSS_NT=23;SGT=CC->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	55:0:0:0:0,0:55,55:0,0:0,0	126:3:0:0:1,1:112,116:0,0:10,12
14	25735847	.	T	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||HMGN2P6|processed_pseudogene|NON_CODING|ENST00000551091||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	52:1:0:0:0,0:0,1:0,0:51,51	94:1:0:0:0,0:5,7:0,0:88,89
14	25735854	rs181778850	C	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||HMGN2P6|processed_pseudogene|NON_CODING|ENST00000551091||1),INTERGENIC(MODIFIER||||||||||1);RSPOS=25735854;GMAF=0.0014;dbSNPBuildID=135;SSR=0;SAO=0;VP=050000000005000014000100;WGT=1;VC=SNV;ASP;KGPhase1;KGPROD	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	57:1:0:0:0,0:56,57:0,0:0,0	94:0:0:0:0,0:89,89:0,0:5,7
14	26346409	.	G	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-314P15.2|lincRNA|NON_CODING|ENST00000546412|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:0:0:0:0,0:0,0:29,29:0,0	98:0:0:0:0,0:11,11:87,87:0,0
14	26621361	.	G	A	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	41:0:0:0:0,0:0,0:41,41:0,0	92:0:0:0:6,6:0,0:86,86:0,0
14	27369273	.	A	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-384J4.1|lincRNA|NON_CODING|ENST00000548170|3|1),INTRON(MODIFIER|||||RP11-384J4.2|lincRNA|NON_CODING|ENST00000550024|2|1),INTRON(MODIFIER|||||RP11-384J4.2|lincRNA|NON_CODING|ENST00000552303|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:0:0:0:31,31:0,0:0,0:0,0	92:0:0:0:86,86:0,0:6,6:0,0
14	27878419	.	T	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||CTD-3006G17.2|processed_transcript|NON_CODING|ENST00000553392|2|1),INTRON(MODIFIER|||||CTD-3006G17.2|processed_transcript|NON_CODING|ENST00000554904|2|1),INTRON(MODIFIER|||||CTD-3006G17.2|processed_transcript|NON_CODING|ENST00000555797|3|1),INTRON(MODIFIER|||||CTD-3006G17.2|processed_transcript|NON_CODING|ENST00000556890|2|1),INTRON(MODIFIER|||||RP11-384J4.2|lincRNA|NON_CODING|ENST00000553468|5|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:1:0:0:0,0:0,0:0,0:29,35	57:1:0:0:0,0:7,7:0,0:49,61
14	27895539	.	G	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||CTD-3006G17.2|processed_transcript|NON_CODING|ENST00000553392|2|1),INTRON(MODIFIER|||||CTD-3006G17.2|processed_transcript|NON_CODING|ENST00000554904|2|1),INTRON(MODIFIER|||||CTD-3006G17.2|processed_transcript|NON_CODING|ENST00000555797|3|1),INTRON(MODIFIER|||||CTD-3006G17.2|processed_transcript|NON_CODING|ENST00000556890|2|1),INTRON(MODIFIER|||||RP11-384J4.2|lincRNA|NON_CODING|ENST00000553468|5|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:0:0:0:0,0:0,0:35,35:0,0	107:0:0:0:0,0:0,0:96,96:11,11
14	28096580	.	G	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||CTD-3006G17.2|processed_transcript|NON_CODING|ENST00000553392|2|1),INTRON(MODIFIER|||||CTD-3006G17.2|processed_transcript|NON_CODING|ENST00000554904|2|1),INTRON(MODIFIER|||||CTD-3006G17.2|processed_transcript|NON_CODING|ENST00000555797|3|1),INTRON(MODIFIER|||||CTD-3006G17.2|processed_transcript|NON_CODING|ENST00000556890|2|1),INTRON(MODIFIER|||||LINC00645|lincRNA|NON_CODING|ENST00000557359|2|1),INTRON(MODIFIER|||||LINC00645|lincRNA|NON_CODING|ENST00000557399|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:0:0:0:0,0:0,0:34,34:0,0	113:1:0:0:1,1:0,0:102,103:9,9
14	29957320	.	C	T	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:1:0:0:0,0:38,39:0,0:0,0	122:0:0:0:0,0:110,110:0,0:12,12
14	30567866	.	G	C	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||116|PRKD1|protein_coding|CODING|ENST00000549503|2|1),INTRON(MODIFIER|||||CTD-2251F13.1|lincRNA|NON_CODING|ENST00000549360|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:0:0:0:0,0:0,0:36,36:0,0	92:0:0:0:0,0:6,6:86,86:0,0
14	30725039	rs143391059	T	G	.	PASS	NT=ref;QSS=23;QSS_NT=23;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||CTD-2251F13.1|lincRNA|NON_CODING|ENST00000508469|1|1),INTRON(MODIFIER|||||CTD-2251F13.1|lincRNA|NON_CODING|ENST00000549360|1|1);RSPOS=30725039;GMAF=0.0069;dbSNPBuildID=134;SSR=0;SAO=0;VP=050000000005000014000100;WGT=1;VC=SNV;ASP;KGPhase1;KGPROD	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	44:0:0:0:0,0:0,0:0,0:44,44	110:2:0:0:0,0:0,0:12,13:96,97
14	32837733	.	G	A	.	PASS	NT=ref;QSS=23;QSS_NT=23;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||RP11-320M16.2|processed_transcript|NON_CODING|ENST00000557371||1),INTRON(MODIFIER||||1075|AKAP6|protein_coding|CODING|ENST00000557354|1|1),INTRON(MODIFIER||||107|AKAP6|protein_coding|CODING|ENST00000557102|1|1),INTRON(MODIFIER||||1245|AKAP6|protein_coding|CODING|ENST00000557272|1|1),INTRON(MODIFIER||||2319|AKAP6|protein_coding|CODING|ENST00000280979|1|1),INTRON(MODIFIER|||||AKAP6|retained_intron|CODING|ENST00000556037|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	43:1:0:0:0,0:0,0:41,42:1,1	102:0:0:0:14,14:0,0:88,88:0,0
14	33339202	.	G	A	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:2:0:0:0,0:0,1:37,38:0,0	90:1:0:0:7,7:1,1:81,82:0,0
14	34402199	.	T	C	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||145|EGLN3|protein_coding|CODING|ENST00000553215|1|1),INTRON(MODIFIER||||239|EGLN3|protein_coding|CODING|ENST00000250457|1|1),INTRON(MODIFIER||||239|EGLN3|protein_coding|CODING|ENST00000539567|2|1),INTRON(MODIFIER||||78|EGLN3|protein_coding|CODING|ENST00000487915|4|1),UPSTREAM(MODIFIER|||||EGLN3|retained_intron|CODING|ENST00000556785||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	46:0:0:0:0,0:0,0:0,0:46,47	104:1:0:0:0,0:4,4:1,1:98,99
14	35071999	.	A	G	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||131|SNX6|protein_coding|CODING|ENST00000555648||1),DOWNSTREAM(MODIFIER|||||SNX6|nonsense_mediated_decay|CODING|ENST00000557341||1),DOWNSTREAM(MODIFIER|||||SNX6|retained_intron|CODING|ENST00000556303||1),INTRON(MODIFIER||||238|SNX6|protein_coding|CODING|ENST00000557265|5|1),INTRON(MODIFIER||||290|SNX6|protein_coding|CODING|ENST00000396526|5|1),INTRON(MODIFIER||||290|SNX6|protein_coding|CODING|ENST00000396534|5|1),INTRON(MODIFIER||||294|SNX6|protein_coding|CODING|ENST00000355110|7|1),INTRON(MODIFIER||||418|SNX6|protein_coding|CODING|ENST00000362031|6|1),INTRON(MODIFIER|||||SNX6|nonsense_mediated_decay|CODING|ENST00000555416|7|1),INTRON(MODIFIER|||||SNX6|nonsense_mediated_decay|CODING|ENST00000556162|7|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:0:0:0:37,39:0,0:0,0:0,0	87:2:0:0:77,80:0,0:8,10:0,0
14	37134048	.	A	T	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||PAX9|processed_transcript|CODING|ENST00000553267||1),DOWNSTREAM(MODIFIER|||||PAX9|processed_transcript|CODING|ENST00000555639||1),INTRON(MODIFIER||||341|PAX9|protein_coding|CODING|ENST00000361487|2|1),INTRON(MODIFIER||||341|PAX9|protein_coding|CODING|ENST00000402703|3|1),INTRON(MODIFIER||||96|PAX9|protein_coding|CODING|ENST00000554201|1|1),UPSTREAM(MODIFIER|||||PAX9|processed_transcript|CODING|ENST00000557107||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	45:1:0:0:44,46:0,0:0,0:0,0	111:0:0:0:101,101:1,1:0,0:9,10
14	37304775	.	A	G	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||298|SLC25A21|protein_coding|CODING|ENST00000555449|2|1),INTRON(MODIFIER||||299|SLC25A21|protein_coding|CODING|ENST00000331299|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:0:0:0:34,34:0,0:0,0:0,0	111:1:0:0:99,100:0,0:11,11:0,0
14	38109826	.	C	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1886|TTC6|protein_coding|CODING|ENST00000553443|1|1),INTRON(MODIFIER|||||TTC6|nonsense_mediated_decay|CODING|ENST00000533625|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:0:0:0:0,0:33,33:0,0:0,0	108:1:0:0:0,0:103,104:4,4:0,0
14	38293548	.	T	C	.	PASS	NT=ref;QSS=25;QSS_NT=25;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||U6|snRNA|NON_CODING|ENST00000364561||1),INTRON(MODIFIER||||1886|TTC6|protein_coding|CODING|ENST00000553443|27|1),INTRON(MODIFIER||||520|TTC6|protein_coding|CODING|ENST00000267368|8|1),INTRON(MODIFIER||||520|TTC6|protein_coding|CODING|ENST00000476979|9|1),INTRON(MODIFIER||||536|TTC6|protein_coding|CODING|ENST00000382320|10|1),INTRON(MODIFIER|||||TTC6|nonsense_mediated_decay|CODING|ENST00000478811|10|1),INTRON(MODIFIER|||||TTC6|nonsense_mediated_decay|CODING|ENST00000533625|11|1),UPSTREAM(MODIFIER|||||TTC6|nonsense_mediated_decay|CODING|ENST00000555921||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	49:0:0:0:0,0:0,0:0,0:49,49	96:0:0:0:1,1:10,10:0,0:85,85
14	40051006	.	C	T	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	41:0:0:0:0,0:41,41:0,0:0,0	105:0:0:0:0,0:96,96:0,0:9,9
14	42236146	.	A	G	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=EXON(MODIFIER|||||LRFN5|processed_transcript|CODING|ENST00000555279|4|1),START_GAINED(LOW||||466|LRFN5|protein_coding|CODING|ENST00000554171|4|1),UTR_5_PRIME(MODIFIER||||465|LRFN5|protein_coding|CODING|ENST00000554120|2|1),UTR_5_PRIME(MODIFIER||||719|LRFN5|protein_coding|CODING|ENST00000298119|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:0:0:0:39,39:0,0:0,0:0,0	100:0:0:0:95,95:1,1:4,4:0,0
14	42689583	.	G	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:0:0:0:0,0:0,0:30,30:0,0	89:1:0:0:7,7:0,0:81,83:0,0
14	43623922	.	T	C	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	42:1:0:0:0,0:0,0:0,0:41,42	95:5:0:0:0,0:7,7:0,0:83,88
14	45028628	rs147580821	A	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=45028628;GMAF=0.0229;dbSNPBuildID=134;SSR=0;SAO=0;VP=050000000005000014000100;WGT=1;VC=SNV;ASP;KGPhase1;KGPROD	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:0:0:0:32,32:0,0:0,0:0,0	84:1:0:0:79,80:0,0:0,0:4,4
14	45510030	.	C	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1720|FAM179B|protein_coding|CODING|ENST00000361577|11|1),INTRON(MODIFIER||||1773|FAM179B|protein_coding|CODING|ENST00000361462|11|1),INTRON(MODIFIER||||83|KLHL28|protein_coding|CODING|ENST00000556239|1|1),INTRON(MODIFIER||||995|FAM179B|protein_coding|CODING|ENST00000382233|10|1),INTRON(MODIFIER|||||FAM179B|nonsense_mediated_decay|CODING|ENST00000557423|11|1),INTRON(MODIFIER|||||KLHL28|processed_transcript|CODING|ENST00000553817|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:0:0:0:0,0:36,36:1,1:0,0	101:0:0:0:0,0:96,100:0,0:5,5
14	46104734	.	A	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	42:7:0:0:34,39:0,1:1,2:0,1	83:11:0:0:62,67:8,14:2,6:0,1
14	46447856	.	A	C	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-1A16.1|lincRNA|NON_CODING|ENST00000555246|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:0:0:0:35,35:0,0:0,0:0,0	98:0:0:0:87,87:11,11:0,0:0,0
14	46661427	.	T	C	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-1A16.1|lincRNA|NON_CODING|ENST00000555246|1|1),INTRON(MODIFIER|||||RP11-1A16.1|lincRNA|NON_CODING|ENST00000556886|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:0:0:0:0,0:0,0:0,0:39,39	122:0:0:0:0,0:10,10:0,0:112,112
14	47793412	.	C	T	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1025|MDGA2|protein_coding|CODING|ENST00000399232|1|1),INTRON(MODIFIER||||141|MDGA2|protein_coding|CODING|ENST00000486952|1|1),INTRON(MODIFIER||||727|MDGA2|protein_coding|CODING|ENST00000357362|1|1),INTRON(MODIFIER||||727|MDGA2|protein_coding|CODING|ENST00000426342|1|1),INTRON(MODIFIER||||956|MDGA2|protein_coding|CODING|ENST00000439988|1|1),INTRON(MODIFIER|||||MDGA2|nonsense_mediated_decay|CODING|ENST00000482848|1|1),INTRON(MODIFIER|||||MDGA2|nonsense_mediated_decay|CODING|ENST00000557238|1|1),INTRON(MODIFIER|||||MDGA2|processed_transcript|CODING|ENST00000472499|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:0:0:0:0,0:39,39:0,0:0,0	98:0:0:0:0,0:93,93:0,0:5,5
14	48187100	.	C	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	48:0:0:0:0,0:47,47:0,0:1,1	112:2:0:0:1,1:96,97:0,0:13,14
14	48486782	.	C	A	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:0:0:0:0,0:34,34:0,0:0,0	107:1:0:0:7,9:99,99:0,0:0,1
14	48539365	.	G	T	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	42:0:0:0:0,0:0,0:42,42:0,0	85:1:0:0:0,0:0,0:75,77:9,9
14	48894268	.	A	G	.	PASS	NT=ref;QSS=24;QSS_NT=24;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-2G1.1|lincRNA|NON_CODING|ENST00000555693|4|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	47:0:0:0:47,47:0,0:0,0:0,0	101:1:0:0:89,90:0,0:11,11:0,0
14	52971353	.	A	G	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||18|TXNDC16|protein_coding|CODING|ENST00000557374|1|1),INTRON(MODIFIER||||825|TXNDC16|protein_coding|CODING|ENST00000281741|9|1),INTRON(MODIFIER|||||TXNDC16|processed_transcript|CODING|ENST00000554399|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	43:0:0:0:43,43:0,0:0,0:0,0	102:0:0:0:94,94:2,2:6,8:0,0
14	52971384	rs201160108	C	T	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||18|TXNDC16|protein_coding|CODING|ENST00000557374|1|1),INTRON(MODIFIER||||825|TXNDC16|protein_coding|CODING|ENST00000281741|9|1),INTRON(MODIFIER|||||TXNDC16|processed_transcript|CODING|ENST00000554399|1|1);RSPOS=52971384;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000080005000002000100;WGT=1;VC=SNV;INT;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:1:0:0:0,0:39,41:0,0:0,0	98:0:0:0:0,0:93,93:0,0:5,6
14	53247574	.	G	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||GNPNAT1|retained_intron|CODING|ENST00000553987||1),DOWNSTREAM(MODIFIER|||||RP11-589M4.1|antisense|NON_CODING|ENST00000555689||1),DOWNSTREAM(MODIFIER|||||RP11-589M4.1|antisense|NON_CODING|ENST00000555969||1),INTRON(MODIFIER||||113|GNPNAT1|protein_coding|CODING|ENST00000554230|3|1),INTRON(MODIFIER||||162|GNPNAT1|protein_coding|CODING|ENST00000557604|5|1),INTRON(MODIFIER||||184|GNPNAT1|protein_coding|CODING|ENST00000216410|4|1),UPSTREAM(MODIFIER|||||GNPNAT1|processed_transcript|CODING|ENST00000554421||1),UPSTREAM(MODIFIER|||||Metazoa_SRP|misc_RNA|NON_CODING|ENST00000583393||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:0:0:0:0,0:0,0:30,30:0,0	111:2:0:0:10,10:0,0:99,101:0,0
14	55539462	.	C	T	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	42:0:0:0:0,0:42,43:0,0:0,0	107:0:0:0:0,0:96,96:1,1:10,10
14	56604356	.	G	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||420|PELI2|protein_coding|CODING|ENST00000267460|1|1),INTRON(MODIFIER||||76|PELI2|protein_coding|CODING|ENST00000561019|1|1),INTRON(MODIFIER||||93|PELI2|protein_coding|CODING|ENST00000559044|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:0:0:0:0,0:0,0:32,32:0,0	98:1:0:0:5,6:0,0:92,92:0,0
14	56928735	.	C	T	.	PASS	NT=ref;QSS=23;QSS_NT=23;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	48:0:0:0:1,1:46,46:1,1:0,0	105:2:0:0:0,0:95,97:0,0:8,8
14	57152300	.	A	G	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||40|RP11-1085N6.3|protein_coding|CODING|ENST00000554597|2|1),UPSTREAM(MODIFIER|||||RP11-1085N6.1|processed_pseudogene|NON_CODING|ENST00000471982||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	44:0:0:0:44,47:0,0:0,0:0,0	109:1:0:0:100,102:0,0:8,8:0,0
14	57753039	.	T	G	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||AP5M1|nonsense_mediated_decay|CODING|ENST00000555448||1),DOWNSTREAM(MODIFIER|||||AP5M1|processed_transcript|CODING|ENST00000556723||1),EXON(MODIFIER|||||AP5M1|retained_intron|CODING|ENST00000554863|3|1),INTRON(MODIFIER||||490|AP5M1|protein_coding|CODING|ENST00000261558|7|1),INTRON(MODIFIER||||504|AP5M1|protein_coding|CODING|ENST00000431972|8|1),INTRON(MODIFIER|||||AP5M1|nonsense_mediated_decay|CODING|ENST00000556377|1|1),SPLICE_SITE_DONOR(HIGH||||490|AP5M1|protein_coding|CODING|ENST00000261558|7|1),SPLICE_SITE_DONOR(HIGH||||504|AP5M1|protein_coding|CODING|ENST00000431972|8|1),SPLICE_SITE_DONOR(HIGH|||||AP5M1|nonsense_mediated_decay|CODING|ENST00000556377|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	41:0:0:0:0,0:0,0:0,0:41,41	98:1:0:0:0,0:0,0:12,13:85,85
14	58661702	.	C	G	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||C14orf37|processed_transcript|CODING|ENST00000554218|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:2:0:0:0,0:36,38:0,0:0,0	97:5:0:0:1,2:84,88:7,7:0,0
14	61900116	.	A	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||128|PRKCH|protein_coding|CODING|ENST00000556778|1|1),INTRON(MODIFIER||||143|PRKCH|protein_coding|CODING|ENST00000553830|2|1),INTRON(MODIFIER||||14|PRKCH|protein_coding|CODING|ENST00000555542|2|1),INTRON(MODIFIER||||150|PRKCH|protein_coding|CODING|ENST00000555185|1|1),INTRON(MODIFIER||||223|PRKCH|protein_coding|CODING|ENST00000557585|2|1),INTRON(MODIFIER||||522|PRKCH|protein_coding|CODING|ENST00000555082|2|1),INTRON(MODIFIER||||52|PRKCH|protein_coding|CODING|ENST00000553726|2|1),INTRON(MODIFIER||||683|PRKCH|protein_coding|CODING|ENST00000332981|2|1),INTRON(MODIFIER||||70|PRKCH|protein_coding|CODING|ENST00000556164|2|1),INTRON(MODIFIER||||72|PRKCH|protein_coding|CODING|ENST00000555906|2|1),INTRON(MODIFIER||||82|PRKCH|protein_coding|CODING|ENST00000553831|2|1),INTRON(MODIFIER||||86|PRKCH|protein_coding|CODING|ENST00000553265|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:2:0:0:29,31:0,0:0,0:0,0	103:2:0:0:94,95:0,0:7,8:0,0
14	62386566	rs74488535	T	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||CTD-2277K2.1|lincRNA|NON_CODING|ENST00000554138|1|1),INTRON(MODIFIER|||||CTD-2277K2.1|lincRNA|NON_CODING|ENST00000554436|2|1);RSPOS=62386566;dbSNPBuildID=134;SSR=16;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:0:0:0:0,0:0,0:0,0:29,29	88:1:0:0:5,5:0,0:0,0:82,83
14	63665477	.	A	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:0:0:0:30,30:0,0:0,0:0,0	106:0:0:0:100,100:0,0:6,6:0,0
14	63683874	.	A	G	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||178|RHOJ|protein_coding|CODING|ENST00000555125|1|1),INTRON(MODIFIER||||214|RHOJ|protein_coding|CODING|ENST00000316754|1|1),INTRON(MODIFIER|||||RHOJ|nonsense_mediated_decay|CODING|ENST00000557447|1|1),INTRON(MODIFIER|||||RHOJ|processed_transcript|CODING|ENST00000557133|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:0:0:0:35,36:0,0:0,0:0,0	93:3:0:0:83,85:0,0:7,15:0,1
14	66183512	.	A	G	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||169|FUT8|protein_coding|CODING|ENST00000417683|1|1),INTRON(MODIFIER||||412|FUT8|protein_coding|CODING|ENST00000557164|6|1),INTRON(MODIFIER||||446|FUT8|protein_coding|CODING|ENST00000358307|7|1),INTRON(MODIFIER||||575|FUT8|protein_coding|CODING|ENST00000360689|7|1),INTRON(MODIFIER||||575|FUT8|protein_coding|CODING|ENST00000394585|7|1),INTRON(MODIFIER||||575|FUT8|protein_coding|CODING|ENST00000394586|6|1),INTRON(MODIFIER|||||FUT8|nonsense_mediated_decay|CODING|ENST00000342677|7|1),INTRON(MODIFIER|||||FUT8|processed_transcript|CODING|ENST00000554765|4|1),INTRON(MODIFIER|||||FUT8|processed_transcript|CODING|ENST00000557536|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	64:2:0:0:61,66:1,1:0,0:0,0	119:3:0:0:102,109:3,3:8,9:3,5
14	66184098	.	A	G	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||169|FUT8|protein_coding|CODING|ENST00000417683|1|1),INTRON(MODIFIER||||412|FUT8|protein_coding|CODING|ENST00000557164|6|1),INTRON(MODIFIER||||446|FUT8|protein_coding|CODING|ENST00000358307|7|1),INTRON(MODIFIER||||575|FUT8|protein_coding|CODING|ENST00000360689|7|1),INTRON(MODIFIER||||575|FUT8|protein_coding|CODING|ENST00000394585|7|1),INTRON(MODIFIER||||575|FUT8|protein_coding|CODING|ENST00000394586|6|1),INTRON(MODIFIER|||||FUT8|nonsense_mediated_decay|CODING|ENST00000342677|7|1),INTRON(MODIFIER|||||FUT8|processed_transcript|CODING|ENST00000554765|4|1),INTRON(MODIFIER|||||FUT8|processed_transcript|CODING|ENST00000557536|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	41:3:0:0:37,41:0,0:1,2:0,0	83:11:0:0:60,67:0,2:12,17:0,0
14	66907318	.	T	C	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-72M17.1|lincRNA|NON_CODING|ENST00000556361|1|1),INTRON(MODIFIER|||||RP11-72M17.1|lincRNA|NON_CODING|ENST00000556874|4|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:0:0:0:0,0:0,0:0,0:35,35	94:0:0:0:0,0:5,6:0,0:89,89
14	67004928	.	G	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||380|GPHN|protein_coding|CODING|ENST00000459628|1|1),INTRON(MODIFIER||||705|GPHN|protein_coding|CODING|ENST00000305960|1|1),INTRON(MODIFIER||||736|GPHN|protein_coding|CODING|ENST00000315266|1|1),INTRON(MODIFIER||||769|GPHN|protein_coding|CODING|ENST00000478722|1|1),INTRON(MODIFIER||||782|GPHN|protein_coding|CODING|ENST00000543237|1|1),INTRON(MODIFIER|||||GPHN|nonsense_mediated_decay|CODING|ENST00000553936|1|1),INTRON(MODIFIER|||||GPHN|nonsense_mediated_decay|CODING|ENST00000555668|1|1),INTRON(MODIFIER|||||GPHN|nonsense_mediated_decay|CODING|ENST00000556633|1|1),INTRON(MODIFIER|||||GPHN|nonsense_mediated_decay|CODING|ENST00000557654|1|1),INTRON(MODIFIER|||||GPHN|processed_transcript|CODING|ENST00000556020|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:0:0:0:0,0:0,0:31,31:0,0	90:0:0:0:5,5:0,0:85,85:0,0
14	68811288	.	T	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||350|RAD51B|protein_coding|CODING|ENST00000471583|8|1),INTRON(MODIFIER||||366|RAD51B|protein_coding|CODING|ENST00000390683|7|1),INTRON(MODIFIER||||366|RAD51B|protein_coding|CODING|ENST00000488612|8|1),INTRON(MODIFIER||||384|RAD51B|protein_coding|CODING|ENST00000487270|8|1),INTRON(MODIFIER||||425|RAD51B|protein_coding|CODING|ENST00000487861|8|1),INTRON(MODIFIER|||||RAD51B|nonsense_mediated_decay|CODING|ENST00000479335|9|1),INTRON(MODIFIER|||||RAD51B|processed_transcript|CODING|ENST00000460526|2|1),INTRON(MODIFIER|||||RAD51B|processed_transcript|CODING|ENST00000468382|2|1),INTRON(MODIFIER|||||RAD51B|processed_transcript|CODING|ENST00000469165|2|1),INTRON(MODIFIER|||||RAD51B|processed_transcript|CODING|ENST00000478014|2|1),INTRON(MODIFIER|||||RAD51B|processed_transcript|CODING|ENST00000492236|3|1),INTRON(MODIFIER|||||RAD51B|processed_transcript|CODING|ENST00000497460|3|1),INTRON(MODIFIER|||||RAD51B|processed_transcript|CODING|ENST00000553595|4|1),INTRON(MODIFIER|||||RAD51B|processed_transcript|CODING|ENST00000554244|2|1),INTRON(MODIFIER|||||RAD51B|processed_transcript|CODING|ENST00000557045|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:0:0:0:0,0:0,0:0,0:33,34	94:3:0:0:0,0:8,9:1,2:82,84
14	72290879	.	G	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:0:0:0:0,0:0,0:33,33:0,0	97:1:0:0:5,6:0,0:91,92:0,0
14	73697857	.	T	C	.	PASS	NT=ref;QSS=24;QSS_NT=24;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	50:3:0:0:0,0:0,0:0,0:47,50	110:0:0:0:0,0:6,6:0,0:104,106
14	75222345	.	G	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:1:0:0:0,0:0,0:30,31:0,0	81:4:0:0:5,5:0,1:72,76:0,0
14	77645474	rs71428780	T	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||22|TMEM63C|protein_coding|CODING|ENST00000557408|1|1),INTRON(MODIFIER||||35|TMEM63C|protein_coding|CODING|ENST00000556514|1|1),INTRON(MODIFIER||||50|TMEM63C|protein_coding|CODING|ENST00000555338|1|1),INTRON(MODIFIER|||||RP11-463C8.4|nonsense_mediated_decay|NON_CODING|ENST00000557752|2|1),INTRON(MODIFIER|||||TMEM63C|retained_intron|CODING|ENST00000555588|1|1),UPSTREAM(MODIFIER||||163|TMEM63C|protein_coding|CODING|ENST00000554766||1),UPSTREAM(MODIFIER||||49|TMEM63C|protein_coding|CODING|ENST00000554346||1),UPSTREAM(MODIFIER||||806|TMEM63C|protein_coding|CODING|ENST00000298351||1);RSPOS=77645474;GMAF=0.326;dbSNPBuildID=130;SSR=0;SAO=0;VP=050100000005000116000100;WGT=1;VC=SNV;SLO;ASP;GNO;KGPhase1;KGPROD;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	12:1:0:0:0,0:0,0:0,0:11,12	66:8:0:0:0,0:15,18:0,0:43,48
14	81142908	.	A	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1094|CEP128|protein_coding|CODING|ENST00000281129|18|1),INTRON(MODIFIER||||1094|CEP128|protein_coding|CODING|ENST00000555265|19|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:0:0:0:32,32:0,0:0,0:0,0	90:0:0:0:86,86:4,4:0,0:0,0
14	81242920	.	A	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1094|CEP128|protein_coding|CODING|ENST00000281129|15|1),INTRON(MODIFIER||||1094|CEP128|protein_coding|CODING|ENST00000555265|16|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:1:0:0:28,29:0,0:0,0:0,0	93:4:0:0:83,86:0,0:6,6:0,1
14	83063468	.	C	G	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:0:0:0:0,0:35,35:0,0:0,0	100:0:0:0:0,0:93,93:7,7:0,0
14	83142030	.	A	T	.	PASS	NT=ref;QSS=24;QSS_NT=24;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-406A9.2|lincRNA|NON_CODING|ENST00000555150|2|1),INTRON(MODIFIER|||||RP11-406A9.2|lincRNA|NON_CODING|ENST00000556970|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	60:13:0:0:47,128:0,0:0,4:0,4	206:29:0:0:163,449:1,1:0,13:13,37
14	83577763	.	G	A	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:0:0:0:0,0:0,0:35,35:0,0	98:1:0:0:10,10:0,0:87,88:0,0
14	84297827	.	C	A	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	42:0:0:0:0,0:42,42:0,0:0,0	100:1:0:0:8,8:91,92:0,0:0,0
14	84679696	.	T	G	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	43:0:0:0:0,0:0,0:0,0:43,43	103:2:0:0:0,0:1,1:5,6:95,96
14	84679706	.	T	G	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	43:0:0:0:0,0:0,0:0,0:43,43	99:2:0:0:0,0:0,0:5,6:92,93
14	84781866	.	C	A	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:0:0:0:0,0:39,39:0,0:0,0	113:0:0:0:7,7:106,107:0,0:0,0
14	84864576	.	G	C	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	42:8:12:0:0,0:0,2:34,131:0,0	97:16:17:0:0,2:7,15:74,250:0,0
14	84864592	rs12895812	G	C	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=84864592;dbSNPBuildID=121;SSR=0;SAO=0;VP=050000000001000002000100;WGT=1;VC=SNV;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	60:4:0:0:0,0:1,3:55,147:0,1	122:9:0:0:3,12:6,16:104,254:0,0
14	84972920	.	G	A	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	41:0:0:0:0,0:0,0:41,41:0,0	93:2:0:0:5,6:0,0:86,86:0,1
14	85016847	.	T	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	27:0:0:0:0,0:0,0:0,0:27,27	107:0:0:0:0,0:7,7:0,0:100,100
14	85016855	.	G	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	28:0:0:0:0,0:0,0:28,28:0,0	106:0:0:0:6,6:0,0:100,100:0,0
14	85381227	.	G	A	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:1:0:0:0,0:0,0:38,39:0,0	99:1:0:0:6,6:0,0:92,93:0,0
14	85386452	.	C	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:1:0:0:0,0:31,32:0,0:0,0	99:2:0:0:12,13:85,88:0,0:0,0
14	86193561	.	C	G	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:1:0:0:0,0:33,35:0,0:0,0	116:2:0:0:0,0:106,109:8,8:0,0
14	86565176	.	T	C	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||CTD-2341M24.1|lincRNA|NON_CODING|ENST00000553668|2|1),INTRON(MODIFIER|||||CTD-2341M24.1|lincRNA|NON_CODING|ENST00000554647|1|1),INTRON(MODIFIER|||||CTD-2341M24.1|lincRNA|NON_CODING|ENST00000557195|4|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:0:0:0:0,0:0,0:0,0:35,36	104:0:0:0:0,0:13,16:0,0:91,92
14	87045061	rs111428811	C	A	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=87045061;GMAF=0.0101;dbSNPBuildID=132;SSR=0;SAO=0;VP=050100000001040116000100;WGT=1;VC=SNV;SLO;VLD;GNO;KGPhase1;KGPROD;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	42:1:0:0:0,0:41,42:0,0:0,0	135:1:0:0:16,16:118,120:0,0:0,0
14	87527265	.	T	A	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	42:2:0:0:0,0:0,0:0,0:40,42	111:2:0:0:6,7:0,0:0,0:103,104
14	88114661	.	G	T	.	PASS	NT=ref;QSS=28;QSS_NT=28;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||CTD-2007A10.1|lincRNA|NON_CODING|ENST00000557784|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	57:0:0:0:0,0:0,0:57,57:0,0	103:0:0:0:0,0:0,0:96,96:7,7
14	88746263	rs201116691	A	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||155|KCNK10|protein_coding|CODING|ENST00000556282|1|1),INTRON(MODIFIER||||538|KCNK10|protein_coding|CODING|ENST00000340700|1|1),INTRON(MODIFIER||||543|KCNK10|protein_coding|CODING|ENST00000319231|1|1);RSPOS=88746263;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000080005000002000100;WGT=1;VC=SNV;INT;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:0:0:0:40,40:0,0:0,0:0,0	114:0:0:0:108,108:1,1:5,6:0,0
14	91422828	.	G	A	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||549|RPS6KA5|protein_coding|CODING|ENST00000418736|3|1),INTRON(MODIFIER||||723|RPS6KA5|protein_coding|CODING|ENST00000536315|3|1),INTRON(MODIFIER||||802|RPS6KA5|protein_coding|CODING|ENST00000261991|3|1),INTRON(MODIFIER|||||RPS6KA5|nonsense_mediated_decay|CODING|ENST00000554206|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:0:0:0:0,0:0,0:36,36:0,0	98:1:0:0:8,8:0,0:89,90:0,0
14	92416151	.	G	A	.	PASS	NT=ref;QSS=26;QSS_NT=26;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER||||448|FBLN5|protein_coding|CODING|ENST00000342058||1),UPSTREAM(MODIFIER||||453|FBLN5|protein_coding|CODING|ENST00000556154||1),UPSTREAM(MODIFIER||||489|FBLN5|protein_coding|CODING|ENST00000267620||1),UPSTREAM(MODIFIER||||90|FBLN5|protein_coding|CODING|ENST00000554468||1),UPSTREAM(MODIFIER|||||FBLN5|nonsense_mediated_decay|CODING|ENST00000557088||1),UPSTREAM(MODIFIER|||||FBLN5|nonsense_mediated_decay|CODING|ENST00000557570||1),UPSTREAM(MODIFIER|||||FBLN5|processed_transcript|CODING|ENST00000557462||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	53:0:0:0:0,0:0,0:53,53:0,0	115:1:0:0:5,7:0,0:109,109:0,0
14	92473038	.	A	G	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1979|TRIP11|protein_coding|CODING|ENST00000267622|10|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:1:0:0:36,37:0,0:0,0:0,1	117:3:0:0:107,112:0,0:7,7:0,0
14	92544243	.	A	G	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||204|ATXN3|protein_coding|CODING|ENST00000506466||1),DOWNSTREAM(MODIFIER|||||ATXN3|nonsense_mediated_decay|CODING|ENST00000515746||1),DOWNSTREAM(MODIFIER|||||ATXN3|nonsense_mediated_decay|CODING|ENST00000554673||1),DOWNSTREAM(MODIFIER|||||ATXN3|processed_transcript|CODING|ENST00000526872||1),INTRON(MODIFIER||||150|ATXN3|protein_coding|CODING|ENST00000557311|4|1),INTRON(MODIFIER||||182|ATXN3|protein_coding|CODING|ENST00000502250|6|1),INTRON(MODIFIER||||222|ATXN3|protein_coding|CODING|ENST00000556220|6|1),INTRON(MODIFIER||||231|ATXN3|protein_coding|CODING|ENST00000554672|7|1),INTRON(MODIFIER||||259|ATXN3|protein_coding|CODING|ENST00000555381|7|1),INTRON(MODIFIER||||277|ATXN3|protein_coding|CODING|ENST00000553491|7|1),INTRON(MODIFIER||||306|ATXN3|protein_coding|CODING|ENST00000340660|8|1),INTRON(MODIFIER||||328|ATXN3|protein_coding|CODING|ENST00000554592|9|1),INTRON(MODIFIER||||346|ATXN3|protein_coding|CODING|ENST00000503767|8|1),INTRON(MODIFIER||||354|ATXN3|protein_coding|CODING|ENST00000429774|8|1),INTRON(MODIFIER||||361|ATXN3|protein_coding|CODING|ENST00000393287|9|1),INTRON(MODIFIER||||364|ATXN3|protein_coding|CODING|ENST00000532032|9|1),INTRON(MODIFIER||||370|ATXN3|protein_coding|CODING|ENST00000545170|9|1),INTRON(MODIFIER|||||ATXN3|nonsense_mediated_decay|CODING|ENST00000359366|8|1),INTRON(MODIFIER|||||ATXN3|nonsense_mediated_decay|CODING|ENST00000553488|10|1),INTRON(MODIFIER|||||ATXN3|nonsense_mediated_decay|CODING|ENST00000553570|7|1),INTRON(MODIFIER|||||ATXN3|nonsense_mediated_decay|CODING|ENST00000554350|8|1),INTRON(MODIFIER|||||ATXN3|nonsense_mediated_decay|CODING|ENST00000554994|8|1),INTRON(MODIFIER|||||ATXN3|nonsense_mediated_decay|CODING|ENST00000555816|7|1),INTRON(MODIFIER|||||ATXN3|nonsense_mediated_decay|CODING|ENST00000556082|6|1),INTRON(MODIFIER|||||ATXN3|nonsense_mediated_decay|CODING|ENST00000556274|8|1),INTRON(MODIFIER|||||ATXN3|nonsense_mediated_decay|CODING|ENST00000556288|8|1),INTRON(MODIFIER|||||ATXN3|nonsense_mediated_decay|CODING|ENST00000556315|8|1),INTRON(MODIFIER|||||ATXN3|nonsense_mediated_decay|CODING|ENST00000556374|10|1),INTRON(MODIFIER|||||ATXN3|nonsense_mediated_decay|CODING|ENST00000556671|8|1),INTRON(MODIFIER|||||ATXN3|nonsense_mediated_decay|CODING|ENST00000556898|9|1),INTRON(MODIFIER|||||ATXN3|nonsense_mediated_decay|CODING|ENST00000556958|6|1),INTRON(MODIFIER|||||ATXN3|nonsense_mediated_decay|CODING|ENST00000557030|6|1),INTRON(MODIFIER|||||ATXN3|processed_transcript|CODING|ENST00000526245|2|1),INTRON(MODIFIER|||||ATXN3|processed_transcript|CODING|ENST00000553287|6|1),INTRON(MODIFIER|||||ATXN3|processed_transcript|CODING|ENST00000553309|9|1),INTRON(MODIFIER|||||ATXN3|processed_transcript|CODING|ENST00000553498|8|1),INTRON(MODIFIER|||||ATXN3|processed_transcript|CODING|ENST00000553686|7|1),INTRON(MODIFIER|||||ATXN3|processed_transcript|CODING|ENST00000554040|6|1),INTRON(MODIFIER|||||ATXN3|processed_transcript|CODING|ENST00000554214|7|1),INTRON(MODIFIER|||||ATXN3|processed_transcript|CODING|ENST00000554491|10|1),INTRON(MODIFIER|||||ATXN3|processed_transcript|CODING|ENST00000555958|8|1),INTRON(MODIFIER|||||ATXN3|processed_transcript|CODING|ENST00000556339|5|1),INTRON(MODIFIER|||||ATXN3|processed_transcript|CODING|ENST00000556644|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:1:0:0:38,41:1,1:0,0:0,0	109:1:0:0:100,102:3,3:5,6:0,0
14	92714889	.	A	G	.	PASS	NT=ref;QSS=30;QSS_NT=30;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||RP11-472N19.3|lincRNA|NON_CODING|ENST00000553537||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	49:1:0:0:48,50:0,0:0,0:0,0	111:2:0:0:92,93:0,0:17,18:0,0
14	93013568	.	T	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||985|RIN3|protein_coding|CODING|ENST00000216487|1|1),INTRON(MODIFIER|||||RIN3|nonsense_mediated_decay|CODING|ENST00000555589|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	28:0:1:0:0,1:0,0:0,0:28,74	83:1:7:0:10,25:0,0:0,0:72,237
14	94265469	.	T	G	.	PASS	NT=ref;QSS=24;QSS_NT=24;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	48:1:0:0:0,0:0,1:0,0:47,47	84:1:0:0:0,0:1,1:6,6:76,77
14	95406668	.	C	A	.	PASS	NT=ref;QSS=23;QSS_NT=23;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	45:0:0:0:0,0:45,46:0,0:0,0	86:4:0:0:9,13:73,82:0,1:0,0
14	96735948	.	C	T	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||284|BDKRB1|protein_coding|CODING|ENST00000553356||1),DOWNSTREAM(MODIFIER||||353|BDKRB1|protein_coding|CODING|ENST00000216629||1),DOWNSTREAM(MODIFIER|||||BDKRB1|processed_transcript|CODING|ENST00000557122||1),INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||RP11-404P21.3|antisense|NON_CODING|ENST00000553638||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:2:0:0:0,0:37,39:0,0:0,0	95:1:0:0:0,0:86,87:0,0:8,8
14	97898429	rs201254070	T	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=97898429;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:1:0:0:0,0:0,0:0,0:29,32	85:4:0:0:0,0:10,12:0,0:71,76
14	97966750	.	T	C	.	PASS	NT=ref;QSS=24;QSS_NT=24;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||CTD-2506J14.1|lincRNA|NON_CODING|ENST00000554862|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	46:0:0:0:0,0:0,0:0,0:46,46	109:0:0:0:0,0:13,13:0,0:96,96
14	98496791	.	G	A	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:0:0:0:0,0:0,0:37,37:0,0	103:1:0:0:5,5:0,0:97,99:0,0
14	98622065	.	A	T	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-61O1.1|lincRNA|NON_CODING|ENST00000555776|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	44:0:0:0:44,44:0,0:0,0:0,0	110:2:0:0:102,104:0,0:0,0:6,6
14	99211736	.	C	T	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	41:0:0:0:0,0:41,42:0,0:0,0	60:1:0:0:0,0:55,57:0,0:4,6
14	99349681	.	A	G	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:0:0:0:37,38:0,0:0,0:0,0	80:0:0:0:75,75:0,0:5,5:0,0
14	99588241	.	G	A	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	50:4:0:0:0,0:0,0:46,48:0,1	100:5:0:0:4,5:0,1:91,94:0,0
14	100692143	.	G	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER|||||RP11-638I2.3|antisense|NON_CODING|ENST00000553860|1|1),INTRON(MODIFIER|||||RP11-638I2.4|antisense|NON_CODING|ENST00000554537|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:0:0:0:0,0:0,0:40,41:0,0	91:2:0:0:4,4:0,0:85,88:0,0
14	101172413	.	G	A	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	45:2:0:0:0,0:0,0:43,46:0,0	101:8:0:0:6,11:1,1:86,101:0,0
14	101264131	.	A	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||MEG3|lincRNA|NON_CODING|ENST00000556407|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:0:0:0:32,32:0,0:0,0:0,0	98:1:0:0:90,92:1,1:6,6:0,0
14	102190818	.	A	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-1029J19.5|lincRNA|NON_CODING|ENST00000557778|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:1:0:0:30,32:0,0:0,0:0,0	117:4:0:0:106,110:1,1:6,6:0,0
14	102213202	.	G	T	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:0:0:0:0,0:0,0:40,40:0,0	113:0:0:0:0,0:0,0:106,106:7,10
14	102213203	.	G	A	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	41:0:0:0:0,0:0,0:41,41:0,0	113:0:0:0:6,9:0,0:105,105:2,2
14	103225093	.	C	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	48:2:0:0:0,0:45,48:0,0:1,1	101:3:0:0:0,0:92,96:0,0:6,6
14	103343790	.	T	C	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||TRAF3|retained_intron|CODING|ENST00000558880||1),INTRON(MODIFIER||||289|TRAF3|protein_coding|CODING|ENST00000559734|2|1),INTRON(MODIFIER||||485|TRAF3|protein_coding|CODING|ENST00000539721|5|1),INTRON(MODIFIER||||543|TRAF3|protein_coding|CODING|ENST00000347662|6|1),INTRON(MODIFIER||||543|TRAF3|protein_coding|CODING|ENST00000351691|5|1),INTRON(MODIFIER||||568|TRAF3|protein_coding|CODING|ENST00000392745|6|1),INTRON(MODIFIER||||568|TRAF3|protein_coding|CODING|ENST00000560371|5|1),INTRON(MODIFIER|||||TRAF3|nonsense_mediated_decay|CODING|ENST00000558700|3|1),UPSTREAM(MODIFIER|||||AL117209.1|miRNA|NON_CODING|ENST00000390701||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	44:3:0:0:0,1:0,0:0,1:41,44	86:7:0:0:0,0:11,17:0,0:68,73
14	103873442	.	C	T	.	PASS	NT=ref;QSS=27;QSS_NT=27;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||128|MARK3|protein_coding|CODING|ENST00000561225|2|1),INTRON(MODIFIER||||177|MARK3|protein_coding|CODING|ENST00000560417|2|1),INTRON(MODIFIER||||659|MARK3|protein_coding|CODING|ENST00000440884|2|1),INTRON(MODIFIER||||713|MARK3|protein_coding|CODING|ENST00000216288|2|1),INTRON(MODIFIER||||729|MARK3|protein_coding|CODING|ENST00000303622|2|1),INTRON(MODIFIER||||744|MARK3|protein_coding|CODING|ENST00000553942|2|1),INTRON(MODIFIER||||752|MARK3|protein_coding|CODING|ENST00000416682|2|1),INTRON(MODIFIER||||753|MARK3|protein_coding|CODING|ENST00000429436|2|1),INTRON(MODIFIER||||776|MARK3|protein_coding|CODING|ENST00000335102|2|1),INTRON(MODIFIER|||||MARK3|processed_transcript|CODING|ENST00000559328|2|1),INTRON(MODIFIER|||||MARK3|processed_transcript|CODING|ENST00000560603|3|1),INTRON(MODIFIER|||||MARK3|processed_transcript|CODING|ENST00000561071|1|1),INTRON(MODIFIER|||||MARK3|retained_intron|CODING|ENST00000558223|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	57:3:0:0:0,0:54,57:0,0:0,0	120:1:0:0:0,0:113,114:0,0:6,6
14	104072351	.	G	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||149|KLC1|protein_coding|CODING|ENST00000557172|1|1),INTRON(MODIFIER||||732|RP11-73M18.2|protein_coding|CODING|ENST00000472726|4|1),INTRON(MODIFIER|||||APOPT1|processed_transcript|CODING|ENST00000474271|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:1:0:0:0,0:0,0:37,37:0,0	134:4:0:0:7,8:0,0:123,126:0,0
14	104169403	.	A	G	.	PASS	NT=ref;QSS=25;QSS_NT=25;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||101|XRCC3|protein_coding|CODING|ENST00000555964||1),DOWNSTREAM(MODIFIER||||111|XRCC3|protein_coding|CODING|ENST00000556980||1),DOWNSTREAM(MODIFIER||||149|XRCC3|protein_coding|CODING|ENST00000553361||1),DOWNSTREAM(MODIFIER||||564|KLC1|protein_coding|CODING|ENST00000557450||1),DOWNSTREAM(MODIFIER||||573|KLC1|protein_coding|CODING|ENST00000348520||1),DOWNSTREAM(MODIFIER||||609|KLC1|protein_coding|CODING|ENST00000554280||1),DOWNSTREAM(MODIFIER||||618|KLC1|protein_coding|CODING|ENST00000452929||1),DOWNSTREAM(MODIFIER||||630|KLC1|protein_coding|CODING|ENST00000555836||1),DOWNSTREAM(MODIFIER||||639|KLC1|protein_coding|CODING|ENST00000334553||1),DOWNSTREAM(MODIFIER|||||KLC1|retained_intron|CODING|ENST00000538504||1),DOWNSTREAM(MODIFIER|||||KLC1|retained_intron|CODING|ENST00000556986||1),DOWNSTREAM(MODIFIER|||||XRCC3|retained_intron|CODING|ENST00000553807||1),DOWNSTREAM(MODIFIER|||||XRCC3|retained_intron|CODING|ENST00000557439||1),INTRON(MODIFIER||||141|XRCC3|protein_coding|CODING|ENST00000554974|1|1),INTRON(MODIFIER||||346|XRCC3|protein_coding|CODING|ENST00000352127|6|1),INTRON(MODIFIER||||346|XRCC3|protein_coding|CODING|ENST00000445556|6|1),INTRON(MODIFIER||||346|XRCC3|protein_coding|CODING|ENST00000553264|5|1),INTRON(MODIFIER||||346|XRCC3|protein_coding|CODING|ENST00000554913|7|1),INTRON(MODIFIER||||346|XRCC3|protein_coding|CODING|ENST00000555055|7|1),INTRON(MODIFIER|||||XRCC3|processed_transcript|CODING|ENST00000555451|1|1),INTRON(MODIFIER|||||XRCC3|processed_transcript|CODING|ENST00000555832|1|1),INTRON(MODIFIER|||||XRCC3|retained_intron|CODING|ENST00000554774|1|1),INTRON(MODIFIER|||||XRCC3|retained_intron|CODING|ENST00000554811|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	51:0:0:0:50,50:1,1:0,0:0,0	95:1:0:0:86,88:0,0:8,8:0,0
14	104755671	.	T	C	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=TT->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=DOWNSTREAM(MODIFIER|||||RP11-260M19.2|lincRNA|NON_CODING|ENST00000553757||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	114:29:0:0:1,1:1,3:0,1:83,128	229:50:0:0:0,0:13,16:0,0:166,256
14	106013198	.	G	A	.	PASS	NT=ref;QSS=25;QSS_NT=25;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=EXON(MODIFIER|||||ELK2BP|unprocessed_pseudogene|NON_CODING|ENST00000415014|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	50:0:0:0:0,0:0,0:50,52:0,0	112:2:0:0:9,10:0,0:101,102:0,0
14	106084160	.	C	T	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	53:0:0:0:0,0:53,57:0,0:0,0	140:1:0:0:1,1:132,138:0,0:6,6
14	106094584	.	A	G	.	PASS	NT=ref;QSS=24;QSS_NT=24;SGT=AA->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||IGHG4|IG_C_gene|NON_CODING|ENST00000390543||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	70:6:0:0:62,80:2,3:0,1:0,0	143:14:0:0:122,159:1,4:6,8:0,0
14	106111195	.	C	G	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||RP11-731F5.2|lincRNA|NON_CODING|ENST00000497397||1),INTRON(MODIFIER|||||RP11-731F5.2|lincRNA|NON_CODING|ENST00000460164|1|1),UPSTREAM(MODIFIER|||||IGHG2|IG_C_gene|NON_CODING|ENST00000390545||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	43:3:0:0:0,0:40,43:0,0:0,0	78:6:0:0:0,0:65,71:7,10:0,0
14	106116179	rs59009724	A	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||RP11-731F5.2|lincRNA|NON_CODING|ENST00000460164||1),UPSTREAM(MODIFIER|||||RP11-731F5.2|lincRNA|NON_CODING|ENST00000497397||1);RSPOS=106116179;GMAF=0.0458;dbSNPBuildID=129;SSR=0;SAO=0;VP=050000000001040016000100;WGT=1;VC=SNV;VLD;KGPhase1;KGPROD;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:0:0:0:34,38:0,0:1,2:0,0	76:4:1:0:66,78:6,8:0,0:0,0
14	106587663	.	G	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->CG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||IGHV3-13|IG_V_gene|NON_CODING|ENST00000390602||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	54:0:0:0:0,0:0,1:54,54:0,0	161:2:0:0:0,0:15,19:144,154:0,0
14	106588638	.	C	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->AC;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||IGHV3-13|IG_V_gene|NON_CODING|ENST00000390602||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	41:0:0:0:0,1:41,41:0,0:0,0	117:1:0:0:6,6:110,111:0,0:0,1
14	106781254	rs17645329	T	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=DOWNSTREAM(MODIFIER|||||IGHVII-28-1|IG_V_pseudogene|NON_CODING|ENST00000519887||1),INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||IGHV4-28|IG_V_gene|NON_CODING|ENST00000390612||1);RSPOS=106781254;dbSNPBuildID=123;SSR=1;SAO=0;VP=050000000005040102000140;WGT=1;VC=SNV;ASP;VLD;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	43:0:0:0:0,0:0,1:0,0:43,43	118:1:0:0:0,0:7,10:0,0:110,112
14	106781255	rs74795252	G	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->GT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=DOWNSTREAM(MODIFIER|||||IGHVII-28-1|IG_V_pseudogene|NON_CODING|ENST00000519887||1),INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||IGHV4-28|IG_V_gene|NON_CODING|ENST00000390612||1);RSPOS=106781255;dbSNPBuildID=131;SSR=0;SAO=0;VP=050000000005040102000100;WGT=1;VC=SNV;ASP;VLD;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	42:0:0:0:0,0:0,0:42,42:0,1	119:1:0:0:0,1:0,0:111,112:7,12
14	106790361	rs144565257	G	A	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||IGHV3-30|IG_V_gene|NON_CODING|ENST00000390613||1),INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||IGHV3-29|IG_V_pseudogene|NON_CODING|ENST00000520707||1),UPSTREAM(MODIFIER|||||IGHVII-28-1|IG_V_pseudogene|NON_CODING|ENST00000519887||1);RSPOS=106790361;GMAF=0.1493;dbSNPBuildID=134;SSR=0;SAO=0;VP=050000000005000016000100;WGT=1;VC=SNV;ASP;KGPhase1;KGPROD;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:1:0:0:0,0:0,0:30,31:0,0	100:1:0:0:16,18:0,0:82,84:1,1
14	107009588	.	T	G	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||IGHV3-49|IG_V_gene|NON_CODING|ENST00000390625||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:1:0:0:0,0:0,0:0,0:34,35	102:2:0:0:0,0:0,0:6,9:94,95
14	107030409	rs191197618	C	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||IGHV5-51|IG_V_gene|NON_CODING|ENST00000390626||1),INTERGENIC(MODIFIER||||||||||1);RSPOS=107030409;dbSNPBuildID=135;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:0:0:0:0,0:35,35:0,0:0,0	100:1:0:0:0,0:92,93:0,0:7,11
14	107164800	.	G	A	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||IGHV1-68|IG_V_pseudogene|NON_CODING|ENST00000519437||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:0:0:0:0,0:0,0:34,34:0,0	124:0:0:0:10,11:0,0:114,114:0,0
14	107164807	rs114294611	C	A	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||IGHV1-68|IG_V_pseudogene|NON_CODING|ENST00000519437||1);RSPOS=107164807;dbSNPBuildID=132;SSR=0;SAO=0;VP=05000000000100040e000100;WGT=1;VC=SNV;HD;KGPilot123;KGPROD;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:0:0:0:0,0:34,34:0,0:0,0	126:1:0:0:10,11:115,116:0,0:0,0
14	107164821	.	A	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||IGHV1-68|IG_V_pseudogene|NON_CODING|ENST00000519437||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:0:0:0:32,32:0,0:0,0:0,0	127:3:0:0:114,115:10,12:0,0:0,0
15	20011803	.	C	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	95:11:0:0:0,4:83,118:0,0:1,2	207:24:0:0:6,15:177,247:0,0:0,2
15	20019503	.	G	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:2:0:0:0,1:0,0:37,42:1,1	106:1:0:0:6,9:0,0:99,105:0,0
15	20024354	.	A	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	68:8:0:0:60,110:0,3:0,0:0,0	166:38:0:0:123,289:5,13:0,2:0,0
15	20075455	.	T	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:1:0:0:0,0:0,1:0,0:33,36	124:2:0:0:0,0:11,14:0,0:111,114
15	20109990	.	T	A	.	PASS	NT=ref;QSS=25;QSS_NT=25;SGT=TT->AT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	63:1:0:0:0,1:0,0:0,0:62,78	185:2:0:0:8,10:0,1:0,0:175,192
15	20111680	.	A	T	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=AA->AT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	92:0:0:0:91,106:0,0:0,0:1,3	219:5:0:0:201,243:0,0:0,0:13,21
15	20111685	.	T	C	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=TT->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	92:0:0:0:0,0:1,3:1,1:90,105	213:3:0:0:0,0:12,19:0,0:198,238
15	20115687	.	T	A	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	76:0:0:0:1,2:0,0:0,0:75,97	273:2:0:0:10,12:1,1:1,3:259,330
15	20118798	.	C	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->AC;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	49:0:0:0:0,3:49,57:0,0:0,0	149:4:0:0:9,17:136,175:0,0:0,0
15	20119678	.	T	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	87:2:0:0:0,0:1,4:1,1:83,114	314:17:0:0:0,0:9,20:1,2:287,415
15	20120079	.	C	A	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	50:0:0:0:0,0:50,62:0,0:0,0	142:3:0:0:7,12:132,163:0,0:0,0
15	20122469	.	C	A	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=CC->AC;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	52:1:0:0:0,1:51,61:0,0:0,0	137:6:0:0:8,8:123,152:0,0:0,0
15	20122811	.	G	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	59:1:0:0:0,0:0,0:58,62:0,1	175:5:0:0:0,1:0,0:162,182:8,11
15	20128287	.	A	G	.	PASS	NT=ref;QSS=34;QSS_NT=34;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	73:3:0:0:70,126:0,0:0,1:0,0	210:4:0:0:191,337:0,0:15,18:0,0
15	20129660	.	A	G	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	58:1:2:0:57,68:0,0:0,2:0,0	208:8:8:0:184,227:0,0:15,32:1,2
15	20132238	.	C	T	.	PASS	NT=ref;QSS=34;QSS_NT=34;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	69:0:0:0:0,0:69,91:0,0:0,1	275:4:0:0:1,2:258,338:0,0:12,14
15	20132240	.	A	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	69:0:0:0:68,91:1,2:0,0:0,0	279:5:0:0:262,345:12,15:0,1:0,0
15	20407210	.	C	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	85:0:0:0:0,0:83,84:1,1:1,1	233:2:0:0:0,0:219,221:0,0:12,14
15	20407212	.	A	C	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	86:0:0:0:85,86:1,1:0,0:0,0	230:2:0:0:212,213:15,17:1,2:0,0
15	20420276	rs62007442	C	T	.	PASS	NT=ref;QSS=35;QSS_NT=35;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=20420276;dbSNPBuildID=129;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	72:0:0:0:0,0:72,72:0,0:0,0	240:2:0:0:1,1:225,227:0,0:12,23
15	20505737	.	T	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	104:2:0:0:0,0:0,3:0,0:102,104	209:1:0:0:0,0:9,17:3,3:196,199
15	20767108	rs200166982	C	G	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||GOLGA8C|unprocessed_pseudogene|NON_CODING|ENST00000446144||1),UPSTREAM(MODIFIER|||||GOLGA8C|unprocessed_pseudogene|NON_CODING|ENST00000454611||1);RSPOS=20767108;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	18:0:0:0:0,0:18,19:0,0:0,0	48:0:0:0:0,1:38,42:10,12:0,0
15	20770587	rs200414919	G	T	.	PASS	NT=ref;QSS=31;QSS_NT=31;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||GOLGA8C|unprocessed_pseudogene|NON_CODING|ENST00000446144|4|1),INTRON(MODIFIER|||||GOLGA8C|unprocessed_pseudogene|NON_CODING|ENST00000454611|4|1);RSPOS=20770587;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000080005040002000100;WGT=1;VC=SNV;INT;ASP;VLD;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:0:0:0:0,0:0,0:29,30:0,0	49:0:0:0:0,0:0,0:37,45:12,15
15	20770628	rs201609063	T	C	.	PASS	NT=ref;QSS=25;QSS_NT=25;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||GOLGA8C|unprocessed_pseudogene|NON_CODING|ENST00000446144|4|1),INTRON(MODIFIER|||||GOLGA8C|unprocessed_pseudogene|NON_CODING|ENST00000454611|4|1);RSPOS=20770628;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000080005070002000100;WGT=1;VC=SNV;INT;ASP;VLD;G5A;G5;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	25:0:0:0:0,0:0,0:0,0:25,26	46:0:0:0:0,0:10,14:0,0:36,42
15	21188117	rs138101294	A	C	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-810K23.3|lincRNA|NON_CODING|ENST00000553416|4|1),INTRON(MODIFIER|||||RP11-810K23.3|lincRNA|NON_CODING|ENST00000554817|2|1),INTRON(MODIFIER|||||RP11-810K23.3|lincRNA|NON_CODING|ENST00000557312|2|1),INTRON(MODIFIER|||||RP11-810K23.3|processed_transcript|NON_CODING|ENST00000554209|2|1);RSPOS=21188117;dbSNPBuildID=134;SSR=0;SAO=0;VP=050000080005000002000100;GENEINFO=LOC348120:348120;WGT=1;VC=SNV;INT;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	15:0:0:0:15,17:0,0:0,0:0,0	46:0:0:0:33,40:13,15:0,0:0,0
15	22735494	.	G	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER||||409|GOLGA6L1|protein_coding|CODING|ENST00000560659||1),UPSTREAM(MODIFIER||||618|GOLGA6L1|protein_coding|CODING|ENST00000355145||1),UPSTREAM(MODIFIER||||668|GOLGA6L1|protein_coding|CODING|ENST00000316397||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	19:0:0:0:0,0:0,0:19,47:0,0	37:0:0:0:0,0:6,8:31,94:0,0
15	23736041	.	C	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	28:0:0:0:0,0:28,30:0,0:0,0	118:1:0:0:6,6:110,113:0,0:1,1
15	24522009	.	G	T	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||RP11-580I1.2|lincRNA|NON_CODING|ENST00000561964||1),DOWNSTREAM(MODIFIER|||||RP11-580I1.2|lincRNA|NON_CODING|ENST00000566676||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	42:0:0:0:0,0:0,0:42,42:0,0	111:0:0:0:0,0:0,0:103,103:8,8
15	24522010	.	G	C	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||RP11-580I1.2|lincRNA|NON_CODING|ENST00000561964||1),DOWNSTREAM(MODIFIER|||||RP11-580I1.2|lincRNA|NON_CODING|ENST00000566676||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	41:0:0:0:0,0:0,0:41,41:0,0	111:0:0:0:0,0:7,7:104,104:0,0
15	24571488	.	G	A	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	43:1:0:0:0,0:0,0:41,42:1,1	122:0:0:0:8,8:0,0:114,115:0,0
15	24625076	.	C	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	43:0:0:0:0,0:43,43:0,0:0,1	111:1:0:0:0,0:100,102:0,0:10,12
15	24674814	rs78025390	A	G	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=24674814;dbSNPBuildID=131;SSR=0;SAO=0;VP=050000000001040102000100;WGT=1;VC=SNV;VLD;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:0:0:0:36,36:0,0:0,0:0,0	96:0:0:0:89,89:0,0:7,10:0,0
15	26862888	rs200922647	G	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||137|GABRB3|protein_coding|CODING|ENST00000555094|2|1),INTRON(MODIFIER||||388|GABRB3|protein_coding|CODING|ENST00000545868|2|1),INTRON(MODIFIER||||402|GABRB3|protein_coding|CODING|ENST00000400188|2|1),INTRON(MODIFIER||||473|GABRB3|protein_coding|CODING|ENST00000299267|4|1),INTRON(MODIFIER||||473|GABRB3|protein_coding|CODING|ENST00000311550|4|1),INTRON(MODIFIER||||529|GABRB3|protein_coding|CODING|ENST00000541819|5|1),INTRON(MODIFIER|||||GABRB3|nonsense_mediated_decay|CODING|ENST00000554556|3|1),INTRON(MODIFIER|||||GABRB3|nonsense_mediated_decay|CODING|ENST00000555632|5|1),INTRON(MODIFIER|||||GABRB3|nonsense_mediated_decay|CODING|ENST00000556166|5|1),UPSTREAM(MODIFIER|||||GABRB3|TEC|CODING|ENST00000555811||1);RSPOS=26862888;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000080005000002000100;WGT=1;VC=SNV;INT;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:0:0:0:0,0:0,0:34,34:0,0	102:0:0:0:0,0:0,0:96,97:6,7
15	28316487	.	G	T	.	PASS	NT=ref;QSS=27;QSS_NT=27;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||217|OCA2|protein_coding|CODING|ENST00000445578|2|1),INTRON(MODIFIER||||263|OCA2|protein_coding|CODING|ENST00000431101|2|1),INTRON(MODIFIER||||668|OCA2|protein_coding|CODING|ENST00000382996|2|1),INTRON(MODIFIER||||814|OCA2|protein_coding|CODING|ENST00000353809|2|1),INTRON(MODIFIER||||838|OCA2|protein_coding|CODING|ENST00000354638|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	53:0:0:0:0,0:0,0:53,53:0,0	107:0:0:0:0,0:0,0:98,98:9,9
15	28539507	rs201647023	G	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||4834|HERC2|protein_coding|CODING|ENST00000261609|3|1),INTRON(MODIFIER|||||HERC2|nonsense_mediated_decay|CODING|ENST00000564734|4|1),INTRON(MODIFIER|||||HERC2|retained_intron|CODING|ENST00000564383|1|1);RSPOS=28539507;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000080005000002000100;WGT=1;VC=SNV;INT;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	27:0:0:0:0,0:0,0:27,28:0,0	76:2:0:0:8,8:0,0:66,69:0,0
15	28879497	rs80047859	T	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||HERC2P9|processed_transcript|NON_CODING|ENST00000529537||1),INTRON(MODIFIER|||||HERC2P9|processed_transcript|NON_CODING|ENST00000529353|2|1),INTRON(MODIFIER|||||HERC2P9|retained_intron|NON_CODING|ENST00000524476|2|1),INTRON(MODIFIER|||||HERC2P9|transcribed_unprocessed_pseudogene|NON_CODING|ENST00000529624|7|1),INTRON(MODIFIER|||||HERC2P9|unprocessed_pseudogene|NON_CODING|ENST00000382946|1|1);RSPOS=28879497;dbSNPBuildID=131;SSR=0;SAO=0;VP=050000000001040102000100;WGT=1;VC=SNV;VLD;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:2:0:0:0,0:0,0:0,0:28,30	106:6:0:0:0,0:10,11:0,0:90,97
15	29028143	.	G	T	.	PASS	NT=ref;QSS=23;QSS_NT=23;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	47:1:0:0:0,0:0,0:46,47:0,0	102:5:1:0:0,0:0,0:90,96:7,7
15	29078874	rs199848301	C	G	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||RP11-578F21.12|processed_transcript|NON_CODING|ENST00000563202||1),INTRON(MODIFIER|||||RP11-578F21.12|processed_transcript|NON_CODING|ENST00000563144|2|1),INTRON(MODIFIER|||||RP11-578F21.12|processed_transcript|NON_CODING|ENST00000564604|2|1),INTRON(MODIFIER|||||RP11-578F21.12|processed_transcript|NON_CODING|ENST00000566178|2|1);RSPOS=29078874;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000080005000002000100;WGT=1;VC=SNV;INT;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	43:0:0:0:0,0:43,43:0,0:0,0	102:0:0:0:0,0:95,95:7,8:0,0
15	29709531	.	G	T	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||539|FAM189A1|protein_coding|CODING|ENST00000261275|1|1),INTRON(MODIFIER||||77|FAM189A1|protein_coding|CODING|ENST00000560082|1|1),INTRON(MODIFIER|||||FAM189A1|processed_transcript|CODING|ENST00000560050|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:0:0:0:0,0:0,0:36,36:0,0	120:1:0:0:0,0:0,0:113,113:6,7
15	31466147	.	T	C	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	48:2:1:0:0,0:0,0:1,1:45,47	103:0:2:0:0,0:4,4:0,0:99,99
15	32302111	.	C	G	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:1:0:0:0,1:36,36:0,0:0,0	87:0:0:0:0,0:82,82:5,5:0,0
15	32302113	.	G	T	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:1:0:0:0,1:0,0:36,36:0,0	87:0:0:0:1,1:0,0:81,81:5,5
15	34156660	.	G	A	.	PASS	NT=ref;QSS=27;QSS_NT=27;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||362|AVEN|protein_coding|CODING|ENST00000306730||1),DOWNSTREAM(MODIFIER|||||AVEN|processed_transcript|CODING|ENST00000558136||1),INTRON(MODIFIER||||4865|RYR3|protein_coding|CODING|ENST00000415757|102|1),INTRON(MODIFIER||||4870|RYR3|protein_coding|CODING|ENST00000389232|103|1),INTRON(MODIFIER|||||RP11-3D4.2|antisense|NON_CODING|ENST00000560268|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	54:1:0:0:0,0:0,1:53,53:0,0	113:0:0:0:8,8:0,0:105,105:0,0
15	36632034	.	G	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||RP11-475A13.2|lincRNA|NON_CODING|ENST00000561236||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:0:0:0:0,0:0,0:31,32:0,0	97:0:0:0:7,7:0,0:89,89:1,1
15	37425433	rs4923738	C	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=37425433;GMAF=0.4144;dbSNPBuildID=111;SSR=0;SAO=0;VP=050100000005000116000100;WGT=1;VC=SNV;SLO;ASP;GNO;KGPhase1;KGPROD;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	25:2:0:0:0,0:23,26:0,0:0,0	84:8:0:0:0,0:64,70:0,0:12,17
15	37964916	.	A	G	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:0:0:0:36,36:0,0:0,0:0,0	106:1:0:0:100,101:0,0:5,5:0,0
15	39109017	.	G	A	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:1:0:0:0,0:0,0:36,37:0,0	86:0:0:0:7,7:1,1:78,78:0,0
15	40428721	.	G	A	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=GG->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||RP11-521C20.1|processed_pseudogene|NON_CODING|ENST00000559747||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	48:2:0:0:0,0:0,0:46,52:0,0	105:8:0:0:8,10:0,1:89,99:0,0
15	41262489	.	A	C	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:3:0:0:37,40:0,0:0,0:0,0	81:0:0:0:75,76:5,5:0,0:1,1
15	41719599	.	C	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER||||710|RTF1|protein_coding|CODING|ENST00000389629|1|1),INTRON(MODIFIER|||||RTF1|processed_transcript|CODING|ENST00000462276|1|1),INTRON(MODIFIER|||||RTF1|processed_transcript|CODING|ENST00000558298|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	47:0:0:0:0,0:47,47:0,0:0,0	120:2:0:0:0,0:112,114:0,0:6,6
15	43313316	.	T	G	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1749|UBR1|protein_coding|CODING|ENST00000290650|27|1),INTRON(MODIFIER||||803|UBR1|protein_coding|CODING|ENST00000382177|26|1),INTRON(MODIFIER|||||UBR1|retained_intron|CODING|ENST00000546274|27|1),UTR_3_PRIME(MODIFIER|||||UBR1|nonsense_mediated_decay|CODING|ENST00000569066|9|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:0:0:0:0,0:0,0:0,0:35,35	132:1:0:0:1,1:0,0:13,13:117,118
15	43512847	.	A	C	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||613|EPB42|protein_coding|CODING|ENST00000540029|1|1),INTRON(MODIFIER||||691|EPB42|protein_coding|CODING|ENST00000441366|1|1),INTRON(MODIFIER||||721|EPB42|protein_coding|CODING|ENST00000300215|1|1),UPSTREAM(MODIFIER||||543|EPB42|protein_coding|CODING|ENST00000568508||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:1:1:0:27,28:1,1:0,0:0,0	88:4:0:0:64,64:20,24:0,0:0,0
15	46674729	.	G	C	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:0:0:0:0,0:0,0:35,35:0,0	105:0:0:0:0,0:7,7:97,97:1,1
15	46981997	.	G	A	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||RP11-627D16.1|lincRNA|NON_CODING|ENST00000559148||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	41:0:0:0:0,0:0,0:40,41:1,1	87:2:0:0:9,9:0,0:76,78:0,0
15	47356824	rs79024361	C	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->AC;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=47356824;dbSNPBuildID=131;SSR=0;SAO=0;VP=050000000009000002000100;WGT=1;VC=SNV;CFL;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:0:0:0:0,1:40,40:0,0:0,0	111:1:0:0:10,17:100,102:0,0:0,0
15	47390588	.	A	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	45:0:0:0:45,47:0,0:0,1:0,0	112:0:0:0:105,110:0,0:7,9:0,0
15	47390597	.	G	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->GT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	43:0:0:0:0,0:0,0:43,45:0,1	114:0:0:0:0,0:0,0:107,112:7,9
15	47632675	.	C	T	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||0|SEMA6D|protein_coding|CODING|ENST00000560636|1|1),INTRON(MODIFIER||||1011|SEMA6D|protein_coding|CODING|ENST00000558014|1|1),INTRON(MODIFIER||||21|SEMA6D|protein_coding|CODING|ENST00000559184|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:0:0:0:0,0:36,36:0,0:0,0	111:0:0:0:0,0:100,101:0,0:11,11
15	47744527	.	A	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||0|SEMA6D|protein_coding|CODING|ENST00000560636|2|1),INTRON(MODIFIER||||1011|SEMA6D|protein_coding|CODING|ENST00000537942|1|1),INTRON(MODIFIER||||1011|SEMA6D|protein_coding|CODING|ENST00000558014|2|1),INTRON(MODIFIER||||21|SEMA6D|protein_coding|CODING|ENST00000559184|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:0:0:0:29,29:0,0:0,0:0,0	98:1:0:0:91,92:0,0:0,0:6,6
15	48436215	.	T	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||440|SLC24A5|protein_coding|CODING|ENST00000449382||1),DOWNSTREAM(MODIFIER||||500|SLC24A5|protein_coding|CODING|ENST00000341459||1),INTRON(MODIFIER||||576|MYEF2|protein_coding|CODING|ENST00000267836|15|1),INTRON(MODIFIER||||600|MYEF2|protein_coding|CODING|ENST00000324324|16|1),INTRON(MODIFIER|||||MYEF2|retained_intron|CODING|ENST00000558289|2|1),INTRON(MODIFIER|||||MYEF2|retained_intron|CODING|ENST00000559057|1|1),INTRON(MODIFIER|||||MYEF2|retained_intron|CODING|ENST00000560530|4|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:2:0:0:0,1:0,0:0,0:32,33	100:2:0:0:0,0:4,5:0,0:94,95
15	51589261	.	C	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||RP11-108K3.1|lincRNA|NON_CODING|ENST00000559909||1),INTRON(MODIFIER||||163|CYP19A1|protein_coding|CODING|ENST00000559646|1|1),INTRON(MODIFIER||||165|CYP19A1|protein_coding|CODING|ENST00000405011|1|1),INTRON(MODIFIER||||171|CYP19A1|protein_coding|CODING|ENST00000559980|2|1),INTRON(MODIFIER||||218|CYP19A1|protein_coding|CODING|ENST00000557858|1|1),INTRON(MODIFIER||||241|CYP19A1|protein_coding|CODING|ENST00000453807|1|1),INTRON(MODIFIER||||243|CYP19A1|protein_coding|CODING|ENST00000561075|1|1),INTRON(MODIFIER||||282|CYP19A1|protein_coding|CODING|ENST00000558328|1|1),INTRON(MODIFIER||||503|CYP19A1|protein_coding|CODING|ENST00000260433|1|1),INTRON(MODIFIER||||503|CYP19A1|protein_coding|CODING|ENST00000396402|1|1),INTRON(MODIFIER||||503|CYP19A1|protein_coding|CODING|ENST00000396404|2|1),INTRON(MODIFIER|||||CYP19A1|non_stop_decay|CODING|ENST00000439712|1|1),INTRON(MODIFIER|||||CYP19A1|non_stop_decay|CODING|ENST00000557934|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:0:0:0:0,0:30,30:0,0:0,0	93:1:0:0:0,0:87,87:0,0:5,6
15	52777960	rs185167166	C	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1828|MYO5A|protein_coding|CODING|ENST00000356338|1|1),INTRON(MODIFIER||||1852|MYO5A|protein_coding|CODING|ENST00000399233|1|1),INTRON(MODIFIER||||1853|MYO5A|protein_coding|CODING|ENST00000553916|1|1),INTRON(MODIFIER||||1855|MYO5A|protein_coding|CODING|ENST00000399231|1|1),INTRON(MODIFIER|||||MYO5A|nonsense_mediated_decay|CODING|ENST00000556196|1|1);RSPOS=52777960;GMAF=0.0023;dbSNPBuildID=135;SSR=0;SAO=0;VP=050000080005000014000100;GENEINFO=MYO5A:4644;WGT=1;VC=SNV;INT;ASP;KGPhase1;KGPROD	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:0:0:0:0,0:32,32:0,0:0,0	123:1:0:0:0,0:112,112:0,0:10,11
15	53788668	.	C	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:2:0:0:0,0:28,36:0,0:0,0	100:1:0:0:0,0:88,100:0,0:11,11
15	54709216	.	C	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=EXON(MODIFIER|||||UNC13C|retained_intron|CODING|ENST00000561210|12|1),INTRON(MODIFIER||||2212|UNC13C|protein_coding|CODING|ENST00000537900|17|1),INTRON(MODIFIER||||2214|UNC13C|protein_coding|CODING|ENST00000260323|18|1),INTRON(MODIFIER||||2214|UNC13C|protein_coding|CODING|ENST00000545554|18|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:0:0:0:0,0:31,31:0,0:0,0	94:0:0:0:0,0:84,85:0,0:10,10
15	55597184	.	A	C	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||94|RAB27A|protein_coding|CODING|ENST00000563262|2|1),INTRON(MODIFIER|||||RAB27A|processed_transcript|CODING|ENST00000561545|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	45:0:0:0:44,44:0,0:1,1:0,0	109:2:0:0:99,101:7,7:1,1:0,0
15	56171599	.	A	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1247|NEDD4|protein_coding|CODING|ENST00000338963|1|1),INTRON(MODIFIER||||1303|NEDD4|protein_coding|CODING|ENST00000506154|1|1),INTRON(MODIFIER||||1319|NEDD4|protein_coding|CODING|ENST00000508342|1|1),INTRON(MODIFIER||||900|NEDD4|protein_coding|CODING|ENST00000435532|5|1),INTRON(MODIFIER|||||NEDD4|processed_transcript|CODING|ENST00000514893|4|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:0:0:0:30,30:0,0:0,0:0,0	94:0:0:0:89,89:0,0:0,0:5,5
15	56860284	rs79756962	C	T	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-1129I3.1|sense_overlapping|NON_CODING|ENST00000562300|5|1),INTRON(MODIFIER|||||RP11-1129I3.1|sense_overlapping|NON_CODING|ENST00000568246|3|1);RSPOS=56860284;GMAF=0.0009;dbSNPBuildID=132;SSR=0;SAO=0;VP=050000000001000014000100;WGT=1;VC=SNV;KGPhase1;KGPROD	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:0:0:0:0,0:38,38:0,0:0,0	96:1:0:0:0,0:90,91:0,0:5,5
15	57055688	.	G	A	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||747|ZNF280D|protein_coding|CODING|ENST00000559000|6|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:0:0:0:0,0:0,0:34,35:0,0	111:1:0:0:9,9:0,0:101,102:0,0
15	58755852	.	C	T	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||24|ALDH1A2|protein_coding|CODING|ENST00000558239|1|1),INTRON(MODIFIER||||438|LIPC|protein_coding|CODING|ENST00000433326|1|1),INTRON(MODIFIER||||499|LIPC|protein_coding|CODING|ENST00000299022|1|1),INTRON(MODIFIER||||499|LIPC|protein_coding|CODING|ENST00000356113|3|1),INTRON(MODIFIER||||499|LIPC|protein_coding|CODING|ENST00000414170|2|1),INTRON(MODIFIER|||||ALDH1A2|processed_transcript|CODING|ENST00000560863|2|1),INTRON(MODIFIER|||||LIPC|retained_intron|CODING|ENST00000559845|1|1),INTRON(MODIFIER|||||RP11-355N15.1|antisense|NON_CODING|ENST00000561083|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	45:0:0:0:0,0:45,45:0,0:0,0	103:1:0:0:0,0:96,97:0,0:6,6
15	59261507	.	T	C	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||130|RNF111|protein_coding|CODING|ENST00000559757|1|1),UPSTREAM(MODIFIER|||||RP11-313H3.1|processed_pseudogene|NON_CODING|ENST00000558683||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:1:0:0:0,0:0,0:0,0:38,40	97:3:0:0:0,0:4,4:0,0:90,94
15	60130829	rs112849481	C	G	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=60130829;dbSNPBuildID=132;SSR=0;SAO=0;VP=050100000001000102000100;WGT=1;VC=SNV;SLO;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:0:0:0:0,0:34,34:0,0:0,0	98:1:0:0:0,0:84,85:13,14:0,0
15	61981182	.	G	A	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-507B12.1|processed_transcript|NON_CODING|ENST00000559590|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	45:0:0:0:0,0:0,0:45,45:0,0	99:1:0:0:6,6:0,0:92,94:0,0
15	62355482	rs72749766	A	C	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||RP11-643M14.1|antisense|NON_CODING|ENST00000558368||1),DOWNSTREAM(MODIFIER|||||RP11-643M14.1|antisense|NON_CODING|ENST00000560813||1),INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER||||3585|VPS13C|protein_coding|CODING|ENST00000395898||1),UPSTREAM(MODIFIER||||3628|VPS13C|protein_coding|CODING|ENST00000395896||1),UPSTREAM(MODIFIER||||369|C2CD4A|protein_coding|CODING|ENST00000355522||1),UPSTREAM(MODIFIER||||3710|VPS13C|protein_coding|CODING|ENST00000249837||1),UPSTREAM(MODIFIER||||3753|VPS13C|protein_coding|CODING|ENST00000261517||1);RSPOS=62355482;dbSNPBuildID=131;SSR=16;SAO=0;VP=050100000005040102000100;WGT=1;VC=SNV;SLO;ASP;VLD;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:1:0:0:37,37:0,0:0,1:0,0	115:3:0:0:105,108:7,7:0,0:0,0
15	62538814	.	T	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=EXON(MODIFIER|||||RP11-299H22.3|processed_transcript|NON_CODING|ENST00000570077|5|1),EXON(MODIFIER|||||RP11-299H22.3|unprocessed_pseudogene|NON_CODING|ENST00000429274|6|1),INTRON(MODIFIER|||||RP11-299H22.3|transcribed_unprocessed_pseudogene|NON_CODING|ENST00000562306|14|1),UPSTREAM(MODIFIER|||||AC126323.1|miRNA|NON_CODING|ENST00000408214||1),UPSTREAM(MODIFIER|||||RP11-299H22.3|lincRNA|NON_CODING|ENST00000561706||1),UPSTREAM(MODIFIER|||||RP11-299H22.3|lincRNA|NON_CODING|ENST00000563606||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	51:1:0:0:0,0:1,1:0,0:49,50	102:0:0:0:0,0:8,8:0,0:94,95
15	62716996	.	T	G	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||TLN2|processed_transcript|CODING|ENST00000561322|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:0:0:0:0,0:0,0:0,0:39,40	99:0:0:0:0,0:1,1:6,6:92,95
15	64998995	.	C	T	.	PASS	NT=ref;QSS=24;QSS_NT=24;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||AC100830.3|lincRNA|NON_CODING|ENST00000560387|1|1),UPSTREAM(MODIFIER||||129|OAZ2|protein_coding|CODING|ENST00000560258||1),UPSTREAM(MODIFIER||||135|OAZ2|protein_coding|CODING|ENST00000559912||1),UPSTREAM(MODIFIER||||189|OAZ2|protein_coding|CODING|ENST00000326005||1),UPSTREAM(MODIFIER||||60|OAZ2|protein_coding|CODING|ENST00000559753||1),UPSTREAM(MODIFIER|||||OAZ2|processed_transcript|CODING|ENST00000559665||1),UPSTREAM(MODIFIER|||||OAZ2|processed_transcript|CODING|ENST00000560781||1),UPSTREAM(MODIFIER|||||RP11-330L19.4|processed_transcript|NON_CODING|ENST00000560837||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	48:0:0:0:0,0:48,48:0,0:0,0	114:0:0:0:0,0:101,101:0,0:13,13
15	65163791	.	G	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->GT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=DOWNSTREAM(MODIFIER||||490|PLEKHO2|protein_coding|CODING|ENST00000323544||1),INTRON(MODIFIER||||226|AC069368.3|protein_coding|CODING|ENST00000437723|5|1),INTRON(MODIFIER|||||AC069368.3|retained_intron|CODING|ENST00000502574|5|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:2:0:0:0,0:0,0:34,37:0,0	84:5:0:0:0,0:0,0:73,81:6,6
15	66630118	rs140210090	T	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||1054|DIS3L|protein_coding|CODING|ENST00000319212||1),DOWNSTREAM(MODIFIER||||971|DIS3L|protein_coding|CODING|ENST00000319194||1),DOWNSTREAM(MODIFIER|||||DIS3L|nonsense_mediated_decay|CODING|ENST00000530537||1),INTRON(MODIFIER||||200|TIPIN|protein_coding|CODING|ENST00000367709|6|1),INTRON(MODIFIER||||293|TIPIN|protein_coding|CODING|ENST00000562124|7|1),INTRON(MODIFIER||||301|TIPIN|protein_coding|CODING|ENST00000261881|7|1),INTRON(MODIFIER|||||TIPIN|nonsense_mediated_decay|CODING|ENST00000566524|6|1);RSPOS=66630118;dbSNPBuildID=134;SSR=0;SAO=0;VP=050000080015000002000100;GENEINFO=TIPIN:54962;WGT=1;VC=SNV;INT;OTH;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:0:0:0:0,0:0,0:0,0:34,34	90:5:1:0:4,6:0,1:0,0:81,83
15	66761098	.	A	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||217|MAP2K1|protein_coding|CODING|ENST00000566326|1|1),INTRON(MODIFIER||||393|MAP2K1|protein_coding|CODING|ENST00000307102|5|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:0:0:0:30,31:0,0:0,0:0,0	95:3:0:0:84,87:0,0:8,8:0,0
15	67901808	rs62016164	T	A	.	PASS	NT=ref;QSS=25;QSS_NT=25;SGT=TT->AT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER||||128|MAP2K5|protein_coding|CODING|ENST00000439036|6|1),INTRON(MODIFIER||||412|MAP2K5|protein_coding|CODING|ENST00000354498|8|1),INTRON(MODIFIER||||438|MAP2K5|protein_coding|CODING|ENST00000395476|8|1),INTRON(MODIFIER||||448|MAP2K5|protein_coding|CODING|ENST00000178640|8|1),INTRON(MODIFIER|||||MAP2K5|processed_transcript|CODING|ENST00000559262|4|1),INTRON(MODIFIER|||||MAP2K5|processed_transcript|CODING|ENST00000560591|8|1),INTRON(MODIFIER|||||MAP2K5|retained_intron|CODING|ENST00000558392|4|1);RSPOS=67901808;dbSNPBuildID=129;SSR=0;SAO=0;VP=050000080001000002000100;GENEINFO=MAP2K5:5607;WGT=1;VC=SNV;INT;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	53:2:0:0:0,1:0,0:0,0:51,58	116:2:0:0:10,12:1,1:0,0:103,117
15	69256642	.	G	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||719|NOX5|protein_coding|CODING|ENST00000448182|1|1),INTRON(MODIFIER||||730|NOX5|protein_coding|CODING|ENST00000455873|1|1),INTRON(MODIFIER||||747|NOX5|protein_coding|CODING|ENST00000260364|1|1),INTRON(MODIFIER|||||RP11-809H16.2|retained_intron|NON_CODING|ENST00000557966|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	44:6:0:0:0,0:0,0:38,50:0,0	113:6:0:0:0,0:0,0:103,114:4,5
15	69578358	rs7182002	T	G	.	PASS	NT=ref;QSS=27;QSS_NT=27;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||RP11-352D13.6|antisense|NON_CODING|ENST00000563004||1),EXON(MODIFIER|||||RP11-352D13.6|antisense|NON_CODING|ENST00000565312|1|1),INTRON(MODIFIER|||||RP11-352D13.5|lincRNA|NON_CODING|ENST00000558269|3|1),INTRON(MODIFIER|||||RP11-352D13.5|lincRNA|NON_CODING|ENST00000558454|1|1),INTRON(MODIFIER|||||RP11-352D13.6|antisense|NON_CODING|ENST00000570122|1|1);RSPOS=69578358;GMAF=0.2431;dbSNPBuildID=116;SSR=0;SAO=0;VP=050000000005070016000100;WGT=1;VC=SNV;ASP;VLD;G5A;G5;KGPhase1;KGPROD;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	45:0:0:0:0,0:0,0:1,1:44,44	126:1:0:0:0,0:0,0:21,22:104,105
15	74153627	.	C	T	.	PASS	NT=ref;QSS=26;QSS_NT=26;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	49:0:0:0:0,0:49,49:0,0:0,0	121:0:0:0:1,1:104,105:0,0:16,16
15	74534334	.	C	A	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1023|CCDC33|protein_coding|CODING|ENST00000321288|2|1),INTRON(MODIFIER||||755|CCDC33|protein_coding|CODING|ENST00000398814|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	45:1:0:0:0,0:44,45:0,0:0,0	124:1:0:0:6,6:117,118:0,0:0,0
15	75021410	.	C	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER||||157|CYP1A1|protein_coding|CODING|ENST00000564596||1),UPSTREAM(MODIFIER||||174|CYP1A1|protein_coding|CODING|ENST00000566503||1),UPSTREAM(MODIFIER||||483|CYP1A1|protein_coding|CODING|ENST00000395049||1),UPSTREAM(MODIFIER||||512|CYP1A1|protein_coding|CODING|ENST00000379727||1),UPSTREAM(MODIFIER||||512|CYP1A1|protein_coding|CODING|ENST00000395048||1),UPSTREAM(MODIFIER||||512|CYP1A1|protein_coding|CODING|ENST00000567032||1),UPSTREAM(MODIFIER|||||CYP1A1|nonsense_mediated_decay|CODING|ENST00000562201||1),UPSTREAM(MODIFIER|||||CYP1A1|nonsense_mediated_decay|CODING|ENST00000569630||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	46:5:0:0:0,1:41,65:0,1:0,3	112:5:0:0:0,0:101,126:0,0:6,8
15	75775244	.	T	C	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=TT->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=DOWNSTREAM(MODIFIER|||||CTD-2323K18.3|unprocessed_pseudogene|NON_CODING|ENST00000569468||1),DOWNSTREAM(MODIFIER|||||PTPN9|processed_transcript|CODING|ENST00000564970||1),INTRON(MODIFIER||||593|PTPN9|protein_coding|CODING|ENST00000306726|8|1),UPSTREAM(MODIFIER|||||PTPN9|processed_transcript|CODING|ENST00000563835||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	45:3:0:0:0,0:0,1:0,1:42,43	114:3:0:0:0,0:6,6:1,2:104,108
15	77630990	rs200899060	T	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1049|PEAK1|protein_coding|CODING|ENST00000558305|2|1),INTRON(MODIFIER||||1746|PEAK1|protein_coding|CODING|ENST00000560626|2|1),INTRON(MODIFIER||||655|PEAK1|protein_coding|CODING|ENST00000564328|2|1),INTRON(MODIFIER|||||PEAK1|processed_transcript|CODING|ENST00000567337|1|1),INTRON(MODIFIER|||||PEAK1|processed_transcript|CODING|ENST00000567808|1|1),INTRON(MODIFIER|||||PEAK1|processed_transcript|CODING|ENST00000569159|2|1),INTRON(MODIFIER|||||PEAK1|processed_transcript|CODING|ENST00000569819|1|1);RSPOS=77630990;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000080005000002000100;WGT=1;VC=SNV;INT;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:1:0:0:0,0:0,0:0,0:30,31	123:2:0:0:14,15:0,0:0,0:107,112
15	79233749	.	A	G	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||133|CTSH|protein_coding|CODING|ENST00000528741|1|1),INTRON(MODIFIER||||335|CTSH|protein_coding|CODING|ENST00000220166|1|1),INTRON(MODIFIER|||||CTSH|nonsense_mediated_decay|CODING|ENST00000525807|1|1),INTRON(MODIFIER|||||CTSH|nonsense_mediated_decay|CODING|ENST00000529861|1|1),INTRON(MODIFIER|||||CTSH|nonsense_mediated_decay|CODING|ENST00000533777|1|1),INTRON(MODIFIER|||||CTSH|processed_transcript|CODING|ENST00000528436|1|1),INTRON(MODIFIER|||||CTSH|processed_transcript|CODING|ENST00000534038|1|1),INTRON(MODIFIER|||||CTSH|processed_transcript|CODING|ENST00000534268|1|1),INTRON(MODIFIER|||||CTSH|retained_intron|CODING|ENST00000530010|1|1),INTRON(MODIFIER|||||CTSH|retained_intron|CODING|ENST00000530929|1|1),UPSTREAM(MODIFIER|||||CTSH|processed_transcript|CODING|ENST00000528191||1),UPSTREAM(MODIFIER|||||CTSH|processed_transcript|CODING|ENST00000534533||1),UPSTREAM(MODIFIER|||||CTSH|retained_intron|CODING|ENST00000529263||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:0:0:0:33,34:0,0:0,0:0,0	63:9:0:0:49,61:0,0:5,5:0,0
15	83459951	.	C	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||100|FSD2|protein_coding|CODING|ENST00000561368|2|1),INTRON(MODIFIER||||704|FSD2|protein_coding|CODING|ENST00000541889|1|1),INTRON(MODIFIER||||749|FSD2|protein_coding|CODING|ENST00000334574|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:1:0:0:0,0:35,36:0,0:0,0	95:0:0:0:0,0:89,89:0,0:6,6
15	84429495	.	C	G	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1682|ADAMTSL3|protein_coding|CODING|ENST00000567476|3|1),INTRON(MODIFIER||||1691|ADAMTSL3|protein_coding|CODING|ENST00000286744|3|1),INTRON(MODIFIER|||||ADAMTSL3|processed_transcript|CODING|ENST00000565653|2|1),INTRON(MODIFIER|||||ADAMTSL3|retained_intron|CODING|ENST00000561483|3|1),INTRON(MODIFIER|||||ADAMTSL3|retained_intron|CODING|ENST00000569510|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:0:0:0:0,0:33,34:0,0:0,0	92:0:0:0:1,1:85,85:6,6:0,0
15	86937684	.	G	T	.	PASS	NT=ref;QSS=23;QSS_NT=23;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1062|AGBL1|protein_coding|CODING|ENST00000421325|15|1),INTRON(MODIFIER||||1066|AGBL1|protein_coding|CODING|ENST00000441037|16|1),INTRON(MODIFIER||||793|AGBL1|protein_coding|CODING|ENST00000389298|9|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	46:0:0:0:0,0:0,0:46,46:0,0	101:2:0:0:0,0:0,0:90,92:9,9
15	87120394	.	T	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1062|AGBL1|protein_coding|CODING|ENST00000421325|20|1),INTRON(MODIFIER||||1066|AGBL1|protein_coding|CODING|ENST00000441037|21|1),INTRON(MODIFIER||||793|AGBL1|protein_coding|CODING|ENST00000389298|14|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	42:0:0:0:0,0:0,0:0,0:42,42	107:0:0:0:4,4:0,0:1,1:102,102
15	87731350	.	G	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:0:0:0:0,0:0,0:34,35:0,0	89:0:0:0:0,0:0,0:82,82:7,7
15	90219212	.	C	T	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||PEX11A|processed_transcript|CODING|ENST00000557982||1),DOWNSTREAM(MODIFIER|||||PLIN1|retained_intron|CODING|ENST00000531697||1),INTRON(MODIFIER||||522|PLIN1|protein_coding|CODING|ENST00000300055|2|1),INTRON(MODIFIER||||522|PLIN1|protein_coding|CODING|ENST00000430628|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:0:0:0:0,0:38,38:0,0:0,0	89:0:0:0:0,0:82,82:0,0:7,7
15	90844797	rs138957493	C	T	.	PASS	NT=ref;QSS=29;QSS_NT=29;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=90844797;GMAF=0.0009;dbSNPBuildID=134;SSR=0;SAO=0;VP=050000000005000014000100;WGT=1;VC=SNV;ASP;KGPhase1;KGPROD	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	45:0:0:0:0,0:45,45:0,0:0,0	101:0:0:0:0,0:85,85:0,0:16,16
15	91840143	rs111517294	T	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=DOWNSTREAM(MODIFIER||||532|SV2B|protein_coding|CODING|ENST00000545111||1),DOWNSTREAM(MODIFIER|||||SV2B|nonsense_mediated_decay|CODING|ENST00000557410||1),UTR_3_PRIME(MODIFIER||||683|SV2B|protein_coding|CODING|ENST00000330276|12|1),UTR_3_PRIME(MODIFIER||||683|SV2B|protein_coding|CODING|ENST00000394232|13|1);RSPOS=91840143;GMAF=0.1319;dbSNPBuildID=132;SSR=0;SAO=0;VP=050000800201040116000100;GENEINFO=SV2B:9899;WGT=1;VC=SNV;REF;U3;VLD;GNO;KGPhase1;KGPROD;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:5:0:0:0,2:0,2:0,1:25,26	74:5:0:0:0,1:15,18:0,0:54,56
15	91938214	.	G	C	.	PASS	NT=ref;QSS=23;QSS_NT=23;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	45:0:0:0:0,0:0,0:45,45:0,0	91:2:0:0:0,0:6,7:83,85:0,0
15	93045911	.	G	A	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||165|C15orf32|protein_coding|CODING|ENST00000556865||1),DOWNSTREAM(MODIFIER||||178|C15orf32|protein_coding|CODING|ENST00000333334||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:0:0:0:0,0:0,0:36,36:0,0	102:1:0:0:12,12:0,0:89,90:0,0
15	93628790	.	A	G	.	PASS	NT=ref;QSS=25;QSS_NT=25;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||434|RGMA|protein_coding|CODING|ENST00000543599|1|1),INTRON(MODIFIER||||450|RGMA|protein_coding|CODING|ENST00000329082|1|1),INTRON(MODIFIER||||89|RGMA|protein_coding|CODING|ENST00000555598|1|1),INTRON(MODIFIER||||9|RGMA|protein_coding|CODING|ENST00000556950|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	50:0:0:0:50,50:0,0:0,0:0,0	100:0:0:0:92,92:0,0:8,8:0,0
15	94786799	rs138274534	T	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||396|MCTP2|protein_coding|CODING|ENST00000543482|1|1),INTRON(MODIFIER|||||MCTP2|nonsense_mediated_decay|CODING|ENST00000456504|1|1),INTRON(MODIFIER|||||MCTP2|processed_transcript|CODING|ENST00000561608|1|1),INTRON(MODIFIER|||||MCTP2|retained_intron|CODING|ENST00000556363|1|1);RSPOS=94786799;GMAF=0.0151;dbSNPBuildID=134;SSR=0;SAO=0;VP=050000000005000014000100;WGT=1;VC=SNV;ASP;KGPhase1;KGPROD	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:0:0:0:0,0:0,0:0,0:33,34	111:4:0:0:0,0:8,10:0,0:99,102
15	96116238	.	A	G	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:0:0:0:37,37:0,0:0,0:0,0	110:1:0:0:102,103:0,0:7,7:0,0
15	98616391	.	G	A	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||U6|snRNA|NON_CODING|ENST00000410429||1),INTRON(MODIFIER|||||CTD-2544M6.1|lincRNA|NON_CODING|ENST00000560360|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:0:0:0:0,0:0,0:37,37:0,0	107:2:0:0:9,9:0,0:96,99:0,0
15	99581893	.	G	C	.	PASS	NT=ref;QSS=26;QSS_NT=26;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-654A16.3|antisense|NON_CODING|ENST00000559468|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	53:0:0:0:0,0:0,0:53,53:0,0	92:1:0:0:0,0:8,8:83,84:0,0
15	100792171	.	G	T	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||ADAMTS17|processed_transcript|CODING|ENST00000560486||1),INTRON(MODIFIER||||1095|ADAMTS17|protein_coding|CODING|ENST00000268070|7|1),INTRON(MODIFIER|||||ADAMTS17|processed_transcript|CODING|ENST00000559976|2|1),INTRON(MODIFIER|||||ADAMTS17|retained_intron|CODING|ENST00000378898|6|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	42:0:0:0:0,0:0,0:42,42:0,0	72:1:0:0:0,0:0,0:65,65:6,6
15	100816567	rs190009741	G	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1095|ADAMTS17|protein_coding|CODING|ENST00000268070|4|1),INTRON(MODIFIER|||||ADAMTS17|nonsense_mediated_decay|CODING|ENST00000558960|3|1),INTRON(MODIFIER|||||ADAMTS17|retained_intron|CODING|ENST00000378898|3|1);RSPOS=100816567;GMAF=0.1342;dbSNPBuildID=135;SSR=0;SAO=0;VP=050000080005000016000100;GENEINFO=ADAMTS17:170691;WGT=1;VC=SNV;INT;ASP;KGPhase1;KGPROD;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	16:2:0:0:0,0:0,0:14,33:0,0	36:3:0:0:9,10:0,0:24,54:0,0
15	101647483	.	C	T	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:1:0:0:0,0:36,37:0,0:0,0	101:0:0:0:0,0:91,91:0,0:10,10
15	102292850	.	C	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=EXON(MODIFIER|||||CTD-2611K5.6|lincRNA|NON_CODING|ENST00000561463|2|1),EXON(MODIFIER|||||CTD-2611K5.6|transcribed_unprocessed_pseudogene|NON_CODING|ENST00000571780|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:0:0:0:0,0:35,53:0,0:0,0	56:3:0:0:4,8:49,86:0,0:0,1
15	102300064	.	C	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=EXON(MODIFIER|||||CTD-2611K5.6|lincRNA|NON_CODING|ENST00000561463|2|1),EXON(MODIFIER|||||CTD-2611K5.6|transcribed_unprocessed_pseudogene|NON_CODING|ENST00000571780|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	17:0:0:0:0,0:17,41:0,0:0,1	33:0:0:0:0,1:26,70:0,1:7,13
15	102429557	.	C	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||WBP1LP5|processed_pseudogene|NON_CODING|ENST00000560907||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	14:0:0:0:0,0:14,17:0,0:0,0	48:0:0:0:10,10:38,45:0,0:0,0
15	102479466	.	G	A	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	41:0:0:0:0,0:0,0:41,41:0,0	117:2:0:0:6,6:0,0:109,115:0,0
16	173776	.	G	A	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=GG->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER||||181|NPRL3|protein_coding|CODING|ENST00000419636|2|1),INTRON(MODIFIER||||389|NPRL3|protein_coding|CODING|ENST00000399951|2|1),INTRON(MODIFIER||||543|NPRL3|protein_coding|CODING|ENST00000262313|2|1),INTRON(MODIFIER||||568|NPRL3|protein_coding|CODING|ENST00000399953|2|1),INTRON(MODIFIER|||||NPRL3|nonsense_mediated_decay|CODING|ENST00000399957|2|1),INTRON(MODIFIER|||||NPRL3|nonsense_mediated_decay|CODING|ENST00000422814|1|1),INTRON(MODIFIER|||||NPRL3|nonsense_mediated_decay|CODING|ENST00000445810|2|1),INTRON(MODIFIER|||||NPRL3|nonsense_mediated_decay|CODING|ENST00000456528|4|1),INTRON(MODIFIER|||||NPRL3|nonsense_mediated_decay|CODING|ENST00000457916|2|1),INTRON(MODIFIER|||||NPRL3|nonsense_mediated_decay|CODING|ENST00000483663|1|1),INTRON(MODIFIER|||||NPRL3|processed_transcript|CODING|ENST00000405960|3|1),INTRON(MODIFIER|||||NPRL3|processed_transcript|CODING|ENST00000428323|2|1),INTRON(MODIFIER|||||NPRL3|processed_transcript|CODING|ENST00000468260|3|1),UPSTREAM(MODIFIER|||||NPRL3|processed_transcript|CODING|ENST00000473674||1),UPSTREAM(MODIFIER|||||Z69666.2|antisense|NON_CODING|ENST00000445733||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:2:0:0:0,1:0,0:38,42:0,0	84:7:0:0:5,6:0,3:72,87:0,0
16	274571	.	G	A	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||LUC7L|retained_intron|CODING|ENST00000467552||1),DOWNSTREAM(MODIFIER|||||LUC7L|retained_intron|CODING|ENST00000494545||1),INTRON(MODIFIER||||181|LUC7L|protein_coding|CODING|ENST00000430864|1|1),INTRON(MODIFIER||||272|LUC7L|protein_coding|CODING|ENST00000397780|1|1),INTRON(MODIFIER||||31|LUC7L|protein_coding|CODING|ENST00000428363|3|1),INTRON(MODIFIER||||325|LUC7L|protein_coding|CODING|ENST00000337351|2|1),INTRON(MODIFIER||||325|LUC7L|protein_coding|CODING|ENST00000397783|2|1),INTRON(MODIFIER||||371|LUC7L|protein_coding|CODING|ENST00000293872|2|1),INTRON(MODIFIER||||83|LUC7L|protein_coding|CODING|ENST00000443357|1|1),INTRON(MODIFIER|||||LUC7L|nonsense_mediated_decay|CODING|ENST00000418978|3|1),INTRON(MODIFIER|||||LUC7L|nonsense_mediated_decay|CODING|ENST00000419516|3|1),INTRON(MODIFIER|||||LUC7L|nonsense_mediated_decay|CODING|ENST00000426094|2|1),INTRON(MODIFIER|||||LUC7L|processed_transcript|CODING|ENST00000494366|2|1),INTRON(MODIFIER|||||LUC7L|retained_intron|CODING|ENST00000469109|1|1),INTRON(MODIFIER|||||LUC7L|retained_intron|CODING|ENST00000490762|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:0:0:0:0,0:0,0:40,51:0,0	93:3:0:0:10,11:0,0:80,131:0,0
16	544973	rs113770195	G	C	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=GG->CG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=DOWNSTREAM(MODIFIER|||||AL049542.1|pseudogene|NON_CODING|ENST00000546124||1),INTRON(MODIFIER||||136|RAB11FIP3|protein_coding|CODING|ENST00000412256|3|1),INTRON(MODIFIER||||156|RAB11FIP3|protein_coding|CODING|ENST00000449879|3|1),INTRON(MODIFIER||||181|RAB11FIP3|protein_coding|CODING|ENST00000452814|3|1),INTRON(MODIFIER||||460|RAB11FIP3|protein_coding|CODING|ENST00000450428|3|1),INTRON(MODIFIER||||677|RAB11FIP3|protein_coding|CODING|ENST00000434585|6|1),INTRON(MODIFIER||||756|RAB11FIP3|protein_coding|CODING|ENST00000262305|5|1),INTRON(MODIFIER||||801|RAB11FIP3|protein_coding|CODING|ENST00000457159|6|1),INTRON(MODIFIER|||||RAB11FIP3|retained_intron|CODING|ENST00000495663|2|1);RSPOS=544973;dbSNPBuildID=132;SSR=0;SAO=0;VP=050000080001000102000100;GENEINFO=RAB11FIP3:9727;WGT=1;VC=SNV;INT;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	70:9:0:0:0,0:0,7:61,178:0,0	154:17:0:0:0,1:10,18:127,344:0,1
16	621594	.	G	C	.	PASS	NT=ref;QSS=26;QSS_NT=26;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||123|NHLRC4|protein_coding|CODING|ENST00000424439||1),DOWNSTREAM(MODIFIER||||123|NHLRC4|protein_coding|CODING|ENST00000540585||1),INTRON(MODIFIER||||110|PIGQ|protein_coding|CODING|ENST00000439574|2|1),INTRON(MODIFIER||||147|PIGQ|protein_coding|CODING|ENST00000293874|2|1),INTRON(MODIFIER||||250|PIGQ|protein_coding|CODING|ENST00000409439|1|1),INTRON(MODIFIER||||299|PIGQ|protein_coding|CODING|ENST00000470411|1|1),INTRON(MODIFIER||||313|PIGQ|protein_coding|CODING|ENST00000422307|1|1),INTRON(MODIFIER||||581|PIGQ|protein_coding|CODING|ENST00000321878|1|1),INTRON(MODIFIER||||581|PIGQ|protein_coding|CODING|ENST00000409527|2|1),INTRON(MODIFIER||||760|PIGQ|protein_coding|CODING|ENST00000026218|1|1),UPSTREAM(MODIFIER|||||PIGQ|nonsense_mediated_decay|CODING|ENST00000443147||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	58:3:0:0:0,0:0,1:55,63:0,0	92:2:0:0:0,0:5,7:85,90:0,0
16	964519	rs111934803	T	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER||||134|LMF1|protein_coding|CODING|ENST00000562380|3|1),INTRON(MODIFIER||||149|LMF1|protein_coding|CODING|ENST00000566627|2|1),INTRON(MODIFIER||||166|LMF1|protein_coding|CODING|ENST00000539379|3|1),INTRON(MODIFIER||||197|LMF1|protein_coding|CODING|ENST00000570014|3|1),INTRON(MODIFIER||||330|LMF1|protein_coding|CODING|ENST00000543238|1|1),INTRON(MODIFIER||||350|LMF1|protein_coding|CODING|ENST00000568897|2|1),INTRON(MODIFIER||||567|LMF1|protein_coding|CODING|ENST00000262301|3|1),INTRON(MODIFIER||||567|LMF1|protein_coding|CODING|ENST00000399843|3|1),INTRON(MODIFIER|||||LMF1|nonsense_mediated_decay|CODING|ENST00000545827|4|1),INTRON(MODIFIER|||||LMF1|nonsense_mediated_decay|CODING|ENST00000562226|5|1);RSPOS=964519;dbSNPBuildID=132;SSR=0;SAO=0;VP=050000080001000102000100;GENEINFO=LMF1:64788;WGT=1;VC=SNV;INT;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	70:0:0:0:0,0:1,3:0,0:69,96	175:17:0:0:0,1:9,16:1,1:148,214
16	964699	.	A	C	.	PASS	NT=ref;QSS=26;QSS_NT=26;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||134|LMF1|protein_coding|CODING|ENST00000562380|3|1),INTRON(MODIFIER||||149|LMF1|protein_coding|CODING|ENST00000566627|2|1),INTRON(MODIFIER||||166|LMF1|protein_coding|CODING|ENST00000539379|3|1),INTRON(MODIFIER||||197|LMF1|protein_coding|CODING|ENST00000570014|3|1),INTRON(MODIFIER||||330|LMF1|protein_coding|CODING|ENST00000543238|1|1),INTRON(MODIFIER||||350|LMF1|protein_coding|CODING|ENST00000568897|2|1),INTRON(MODIFIER||||567|LMF1|protein_coding|CODING|ENST00000262301|3|1),INTRON(MODIFIER||||567|LMF1|protein_coding|CODING|ENST00000399843|3|1),INTRON(MODIFIER|||||LMF1|nonsense_mediated_decay|CODING|ENST00000545827|4|1),INTRON(MODIFIER|||||LMF1|nonsense_mediated_decay|CODING|ENST00000562226|5|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	98:12:0:0:82,125:2,5:0,1:2,3	229:27:0:0:175,275:23,38:1,2:3,9
16	1075242	.	C	A	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	52:1:0:0:0,1:51,56:0,0:0,0	93:3:0:0:8,17:82,89:0,1:0,0
16	1306610	rs2401931	G	A	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=GG->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=DOWNSTREAM(MODIFIER|||||RP11-616M22.6|lincRNA|NON_CODING|ENST00000568091||1),DOWNSTREAM(MODIFIER|||||RP11-616M22.6|processed_transcript|NON_CODING|ENST00000440800||1),NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|gGc/gAc|G52D|235|TPSD1|protein_coding|CODING|ENST00000397534|3|1),NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|gGc/gAc|G59D|242|TPSD1|protein_coding|CODING|ENST00000211076|2|1),UPSTREAM(MODIFIER|||||RP11-616M22.5|sense_intronic|NON_CODING|ENST00000566997||1);RSPOS=1306610;RV;dbSNPBuildID=100;SSR=1;SAO=0;VP=050300000a01040102000140;GENEINFO=TPSD1:23430;WGT=1;VC=SNV;S3D;SLO;NSM;REF;VLD;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	61:0:0:0:0,2:0,0:61,61:0,0	112:2:0:0:6,10:0,0:104,106:0,0
16	1306613	rs1060282	C	G	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=CC->CG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=DOWNSTREAM(MODIFIER|||||RP11-616M22.6|lincRNA|NON_CODING|ENST00000568091||1),DOWNSTREAM(MODIFIER|||||RP11-616M22.6|processed_transcript|NON_CODING|ENST00000440800||1),NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|cCa/cGa|P53R|235|TPSD1|protein_coding|CODING|ENST00000397534|3|1),NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|cCa/cGa|P60R|242|TPSD1|protein_coding|CODING|ENST00000211076|2|1),UPSTREAM(MODIFIER|||||RP11-616M22.5|sense_intronic|NON_CODING|ENST00000566997||1);RSPOS=1306613;dbSNPBuildID=86;SSR=1;SAO=0;VP=050300000a01000102000140;GENEINFO=TPSD1:23430;WGT=1;VC=SNV;S3D;SLO;NSM;REF;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	63:0:0:0:0,0:63,63:0,2:0,0	115:2:0:0:0,0:107,108:6,11:0,0
16	1589189	.	G	A	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1462|IFT140|protein_coding|CODING|ENST00000426508|19|1),INTRON(MODIFIER||||226|TMEM204|protein_coding|CODING|ENST00000253934|2|1),INTRON(MODIFIER||||226|TMEM204|protein_coding|CODING|ENST00000566264|1|1),INTRON(MODIFIER|||||IFT140|nonsense_mediated_decay|CODING|ENST00000397417|12|1),INTRON(MODIFIER|||||IFT140|retained_intron|CODING|ENST00000565298|9|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	58:0:0:0:1,1:1,1:56,56:0,0	91:6:0:0:6,7:0,1:79,84:0,0
16	1789072	.	T	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||MIR3177|miRNA|NON_CODING|ENST00000578255||1),INTRON(MODIFIER||||1330|MAPK8IP3|protein_coding|CODING|ENST00000356010|4|1),INTRON(MODIFIER||||1336|MAPK8IP3|protein_coding|CODING|ENST00000250894|4|1),INTRON(MODIFIER|||||MAPK8IP3|retained_intron|CODING|ENST00000561765|4|1),INTRON(MODIFIER|||||MAPK8IP3|retained_intron|CODING|ENST00000564098|4|1),UPSTREAM(MODIFIER|||||MAPK8IP3|processed_transcript|CODING|ENST00000568271||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:3:0:0:0,0:1,1:0,0:28,38	54:4:0:0:6,6:0,0:1,2:43,63
16	2195126	rs201412398	C	A	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RAB26|nonsense_mediated_decay|CODING|ENST00000565592|1|1),UPSTREAM(MODIFIER||||190|RAB26|protein_coding|CODING|ENST00000541451||1),UPSTREAM(MODIFIER||||256|RAB26|protein_coding|CODING|ENST00000210187||1),UPSTREAM(MODIFIER|||||RAB26|retained_intron|CODING|ENST00000561600||1),UPSTREAM(MODIFIER|||||RAB26|retained_intron|CODING|ENST00000562735||1),UPSTREAM(MODIFIER|||||RAB26|retained_intron|CODING|ENST00000564426||1),UPSTREAM(MODIFIER|||||RAB26|retained_intron|CODING|ENST00000567145||1);RSPOS=2195126;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	42:0:0:0:0,0:41,41:1,1:0,0	98:1:0:0:8,8:88,89:0,0:1,1
16	2265740	.	C	T	.	PASS	NT=ref;QSS=23;QSS_NT=23;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||RP11-304L19.8|lincRNA|NON_CODING|ENST00000561544||1),INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER||||153|C16orf79|protein_coding|CODING|ENST00000566018||1),UPSTREAM(MODIFIER||||228|C16orf79|protein_coding|CODING|ENST00000328540||1),UPSTREAM(MODIFIER||||260|C16orf79|protein_coding|CODING|ENST00000562360||1),UPSTREAM(MODIFIER||||321|PGP|protein_coding|CODING|ENST00000333503||1),UPSTREAM(MODIFIER|||||PGP|nonsense_mediated_decay|CODING|ENST00000562001||1),UPSTREAM(MODIFIER|||||PGP|nonsense_mediated_decay|CODING|ENST00000569181||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	44:0:0:0:0,0:44,44:0,0:0,0	92:3:0:0:0,0:78,85:1,1:10,10
16	2370256	.	T	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=DOWNSTREAM(MODIFIER||||209|ABCA3|protein_coding|CODING|ENST00000567910||1),INTRON(MODIFIER||||1646|ABCA3|protein_coding|CODING|ENST00000382381|7|1),INTRON(MODIFIER||||1704|ABCA3|protein_coding|CODING|ENST00000301732|7|1),INTRON(MODIFIER|||||ABCA3|retained_intron|CODING|ENST00000563623|7|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:1:0:0:0,0:0,0:0,0:35,37	86:4:0:0:0,0:11,14:0,0:71,73
16	2941975	.	T	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||140|FLYWCH2|protein_coding|CODING|ENST00000293981|1|1),INTRON(MODIFIER||||140|FLYWCH2|protein_coding|CODING|ENST00000396958|1|1),INTRON(MODIFIER||||144|FLYWCH2|protein_coding|CODING|ENST00000572006|1|1),INTRON(MODIFIER||||90|FLYWCH2|protein_coding|CODING|ENST00000573965|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:0:0:0:0,0:0,0:0,0:34,35	93:2:0:0:0,0:5,6:0,0:86,88
16	3219955	.	A	G	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:0:0:0:33,33:0,0:0,0:0,0	116:1:0:0:108,109:0,0:7,7:0,0
16	4672420	.	T	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||148|MGRN1|protein_coding|CODING|ENST00000591895|1|1),UPSTREAM(MODIFIER||||530|MGRN1|protein_coding|CODING|ENST00000586183||1),UPSTREAM(MODIFIER||||531|MGRN1|protein_coding|CODING|ENST00000415496||1),UPSTREAM(MODIFIER||||552|MGRN1|protein_coding|CODING|ENST00000399577||1),UPSTREAM(MODIFIER||||554|MGRN1|protein_coding|CODING|ENST00000588994||1),UPSTREAM(MODIFIER||||576|MGRN1|protein_coding|CODING|ENST00000262370||1),UPSTREAM(MODIFIER||||593|MGRN1|protein_coding|CODING|ENST00000587747||1),UPSTREAM(MODIFIER|||||MGRN1|nonsense_mediated_decay|CODING|ENST00000536343||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:0:0:0:0,0:1,1:0,0:31,31	69:2:0:0:0,0:11,14:0,0:56,60
16	5198879	.	C	T	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	48:2:0:0:0,0:46,47:0,1:0,0	108:1:0:0:0,0:101,103:0,0:6,7
16	5321270	.	G	A	.	PASS	NT=ref;QSS=23;QSS_NT=23;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||RP11-382N13.1|processed_pseudogene|NON_CODING|ENST00000470389||1),INTRON(MODIFIER|||||RP11-420N3.2|processed_transcript|NON_CODING|ENST00000569895|1|1),INTRON(MODIFIER|||||RP11-420N3.2|retained_intron|NON_CODING|ENST00000585867|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	51:0:0:0:0,0:0,0:51,51:0,0	96:0:0:0:7,8:0,0:89,89:0,0
16	5321271	.	C	G	.	PASS	NT=ref;QSS=25;QSS_NT=25;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||RP11-382N13.1|processed_pseudogene|NON_CODING|ENST00000470389||1),INTRON(MODIFIER|||||RP11-420N3.2|processed_transcript|NON_CODING|ENST00000569895|1|1),INTRON(MODIFIER|||||RP11-420N3.2|retained_intron|NON_CODING|ENST00000585867|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	51:0:0:0:0,0:51,51:0,0:0,0	96:0:0:0:1,1:87,87:8,9:0,0
16	5826874	.	C	T	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-420N3.2|processed_transcript|NON_CODING|ENST00000569895|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:0:0:0:0,0:40,40:0,0:0,0	104:0:0:0:1,1:92,92:0,0:11,11
16	5828110	.	G	A	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-420N3.2|processed_transcript|NON_CODING|ENST00000569895|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	41:0:0:0:0,0:0,0:41,42:0,0	87:0:0:0:6,6:0,0:81,81:0,0
16	8882150	.	G	T	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||500|ABAT|protein_coding|CODING|ENST00000268251||1),DOWNSTREAM(MODIFIER||||500|ABAT|protein_coding|CODING|ENST00000396600||1),INTRON(MODIFIER|||||TMEM186|processed_transcript|CODING|ENST00000564869|1|1),UPSTREAM(MODIFIER||||219|PMM2|protein_coding|CODING|ENST00000566983||1),UPSTREAM(MODIFIER|||||PMM2|processed_transcript|CODING|ENST00000565837||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	44:0:0:0:0,0:0,0:44,45:0,0	86:1:0:0:0,0:0,0:80,81:5,5
16	9122373	rs148649262	C	T	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=9122373;GMAF=0.0005;dbSNPBuildID=134;SSR=0;SAO=0;VP=050000000005000014000100;WGT=1;VC=SNV;ASP;KGPhase1;KGPROD	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	41:2:0:0:0,0:39,41:0,0:0,0	86:3:0:0:0,0:79,83:0,0:4,4
16	9458861	.	C	A	.	PASS	NT=ref;QSS=23;QSS_NT=23;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-243A14.1|lincRNA|NON_CODING|ENST00000564305|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	46:0:0:0:0,0:46,47:0,0:0,0	80:0:0:0:7,7:73,73:0,0:0,0
16	11432533	.	G	C	.	PASS	NT=ref;QSS=24;QSS_NT=24;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||RP11-485G7.5|antisense|NON_CODING|ENST00000572913||1),INTRON(MODIFIER||||84|RMI2|protein_coding|CODING|ENST00000381820|1|1),INTRON(MODIFIER||||84|RMI2|protein_coding|CODING|ENST00000572173|4|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	48:1:0:0:0,0:0,0:47,48:0,0	100:3:0:0:0,0:9,9:88,91:0,0
16	11653982	.	G	A	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||105|LITAF|protein_coding|CODING|ENST00000574703|1|1),INTRON(MODIFIER||||126|LITAF|protein_coding|CODING|ENST00000571976|1|1),INTRON(MODIFIER||||135|LITAF|protein_coding|CODING|ENST00000574701|1|1),INTRON(MODIFIER||||136|LITAF|protein_coding|CODING|ENST00000570798|2|1),INTRON(MODIFIER||||152|LITAF|protein_coding|CODING|ENST00000413364|1|1),INTRON(MODIFIER||||152|LITAF|protein_coding|CODING|ENST00000571627|1|1),INTRON(MODIFIER||||161|LITAF|protein_coding|CODING|ENST00000339430|1|1),INTRON(MODIFIER||||161|LITAF|protein_coding|CODING|ENST00000570904|1|1),INTRON(MODIFIER||||161|LITAF|protein_coding|CODING|ENST00000571688|1|1),INTRON(MODIFIER||||161|LITAF|protein_coding|CODING|ENST00000574763|2|1),INTRON(MODIFIER||||161|LITAF|protein_coding|CODING|ENST00000576036|1|1),INTRON(MODIFIER||||228|LITAF|protein_coding|CODING|ENST00000381810|1|1),INTRON(MODIFIER||||32|LITAF|protein_coding|CODING|ENST00000576334|3|1),INTRON(MODIFIER||||38|LITAF|protein_coding|CODING|ENST00000571277|2|1),INTRON(MODIFIER||||68|LITAF|protein_coding|CODING|ENST00000572255|2|1),INTRON(MODIFIER||||75|LITAF|protein_coding|CODING|ENST00000571459|1|1),INTRON(MODIFIER||||87|LITAF|protein_coding|CODING|ENST00000574848|3|1),INTRON(MODIFIER|||||LITAF|nonsense_mediated_decay|CODING|ENST00000573332|1|1),UPSTREAM(MODIFIER|||||LITAF|nonsense_mediated_decay|CODING|ENST00000575426||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:0:0:0:0,0:0,0:40,40:0,0	88:2:0:0:7,7:0,0:79,81:0,0
16	11669797	.	C	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||105|LITAF|protein_coding|CODING|ENST00000574703|1|1),INTRON(MODIFIER||||126|LITAF|protein_coding|CODING|ENST00000571976|1|1),INTRON(MODIFIER||||135|LITAF|protein_coding|CODING|ENST00000574701|1|1),INTRON(MODIFIER||||136|LITAF|protein_coding|CODING|ENST00000570798|2|1),INTRON(MODIFIER||||152|LITAF|protein_coding|CODING|ENST00000413364|1|1),INTRON(MODIFIER||||152|LITAF|protein_coding|CODING|ENST00000571627|1|1),INTRON(MODIFIER||||161|LITAF|protein_coding|CODING|ENST00000339430|1|1),INTRON(MODIFIER||||161|LITAF|protein_coding|CODING|ENST00000570904|1|1),INTRON(MODIFIER||||161|LITAF|protein_coding|CODING|ENST00000571688|1|1),INTRON(MODIFIER||||161|LITAF|protein_coding|CODING|ENST00000574763|1|1),INTRON(MODIFIER||||161|LITAF|protein_coding|CODING|ENST00000576036|1|1),INTRON(MODIFIER||||228|LITAF|protein_coding|CODING|ENST00000381810|1|1),INTRON(MODIFIER||||32|LITAF|protein_coding|CODING|ENST00000576334|3|1),INTRON(MODIFIER||||38|LITAF|protein_coding|CODING|ENST00000571277|1|1),INTRON(MODIFIER||||68|LITAF|protein_coding|CODING|ENST00000572255|1|1),INTRON(MODIFIER||||75|LITAF|protein_coding|CODING|ENST00000571459|1|1),INTRON(MODIFIER||||87|LITAF|protein_coding|CODING|ENST00000574848|3|1),INTRON(MODIFIER|||||LITAF|nonsense_mediated_decay|CODING|ENST00000573332|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:0:0:0:0,0:32,32:0,0:0,0	108:0:0:0:0,0:98,98:0,0:10,10
16	12356000	.	A	G	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=AA->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER||||282|SNX29|protein_coding|CODING|ENST00000564791|2|1),INTRON(MODIFIER||||408|SNX29|protein_coding|CODING|ENST00000323433|7|1),INTRON(MODIFIER||||428|SNX29|protein_coding|CODING|ENST00000306030|7|1),INTRON(MODIFIER||||813|SNX29|protein_coding|CODING|ENST00000566228|14|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	52:4:0:0:48,50:0,1:0,1:0,0	114:4:0:0:99,102:0,0:10,12:1,2
16	12461214	.	T	C	.	PASS	NT=ref;QSS=27;QSS_NT=27;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=EXON(MODIFIER|||||RP11-165M1.3|antisense|NON_CODING|ENST00000569490|2|1),INTRON(MODIFIER||||282|SNX29|protein_coding|CODING|ENST00000564791|4|1),INTRON(MODIFIER||||408|SNX29|protein_coding|CODING|ENST00000323433|9|1),INTRON(MODIFIER||||428|SNX29|protein_coding|CODING|ENST00000306030|9|1),INTRON(MODIFIER||||69|SNX29|protein_coding|CODING|ENST00000562510|1|1),INTRON(MODIFIER||||813|SNX29|protein_coding|CODING|ENST00000566228|16|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	51:0:0:0:0,0:0,0:0,0:51,51	114:0:0:0:0,0:15,15:0,0:99,99
16	13587511	.	G	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||U91319.1|lincRNA|NON_CODING|ENST00000571619|4|1),INTRON(MODIFIER|||||U91319.1|lincRNA|NON_CODING|ENST00000574540|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:1:0:0:0,0:0,0:38,39:0,0	129:2:0:0:6,6:0,0:121,124:0,0
16	14116340	.	G	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||CTD-2135D7.4|lincRNA|NON_CODING|ENST00000575767||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:1:0:0:0,0:0,0:34,35:0,0	105:1:0:0:5,5:0,0:99,99:0,1
16	18341716	rs183965159	A	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=18341716;dbSNPBuildID=135;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	19:0:0:0:19,26:0,2:0,1:0,0	60:2:2:0:48,53:10,24:0,0:0,0
16	20547730	.	C	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||498|ACSM2B|protein_coding|CODING|ENST00000565322||1),DOWNSTREAM(MODIFIER||||577|ACSM2B|protein_coding|CODING|ENST00000565232||1),DOWNSTREAM(MODIFIER||||577|ACSM2B|protein_coding|CODING|ENST00000567001||1),DOWNSTREAM(MODIFIER|||||ACSM2B|retained_intron|CODING|ENST00000564849||1),DOWNSTREAM(MODIFIER|||||ACSM2B|retained_intron|CODING|ENST00000566998||1),UTR_3_PRIME(MODIFIER||||577|ACSM2B|protein_coding|CODING|ENST00000329697|14|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:0:0:0:0,0:30,31:0,0:0,0	94:4:0:0:8,8:82,86:0,0:0,0
16	22182213	.	G	A	.	PASS	NT=ref;QSS=27;QSS_NT=27;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|Gga/Aga|G53R|154|SDR42E2|protein_coding|CODING|ENST00000330898|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	54:0:0:0:0,0:0,0:54,54:0,0	108:0:0:0:6,6:0,0:102,102:0,0
16	22236040	.	C	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||725|EEF2K|protein_coding|CODING|ENST00000263026|1|1),INTRON(MODIFIER|||||EEF2K|nonsense_mediated_decay|CODING|ENST00000568269|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	46:0:0:0:0,0:46,47:0,0:0,0	133:0:0:0:6,7:127,130:0,0:0,0
16	27472785	.	G	A	.	PASS	NT=ref;QSS=26;QSS_NT=26;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=EXON(MODIFIER|||||GTF3C1|retained_intron|CODING|ENST00000562609|4|1),EXON(MODIFIER|||||GTF3C1|retained_intron|CODING|ENST00000564747|1|1),SYNONYMOUS_CODING(LOW|SILENT|ccC/ccT|P2047|2084|GTF3C1|protein_coding|CODING|ENST00000561623|37|1),SYNONYMOUS_CODING(LOW|SILENT|ccC/ccT|P2072|2109|GTF3C1|protein_coding|CODING|ENST00000356183|37|1),UPSTREAM(MODIFIER|||||GTF3C1|processed_transcript|CODING|ENST00000567806||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	54:0:0:0:0,0:0,0:54,54:0,0	89:1:0:0:6,6:0,0:82,83:0,0
16	28709549	.	G	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||CDC37P1|processed_pseudogene|NON_CODING|ENST00000564603||1),INTRON(MODIFIER||||913|EIF3C|protein_coding|CODING|ENST00000566501|1|1),INTRON(MODIFIER|||||RP11-57A19.4|processed_pseudogene|NON_CODING|ENST00000562217|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:5:0:0:0,0:0,1:28,45:0,0	89:12:0:0:8,15:0,2:69,99:0,0
16	28927456	.	C	T	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||RABEP2|nonsense_mediated_decay|CODING|ENST00000563577||1),DOWNSTREAM(MODIFIER|||||RABEP2|processed_transcript|CODING|ENST00000561803||1),DOWNSTREAM(MODIFIER|||||RABEP2|processed_transcript|CODING|ENST00000562475||1),DOWNSTREAM(MODIFIER|||||RABEP2|processed_transcript|CODING|ENST00000564473||1),DOWNSTREAM(MODIFIER|||||RABEP2|retained_intron|CODING|ENST00000564579||1),DOWNSTREAM(MODIFIER|||||RABEP2|retained_intron|CODING|ENST00000570030||1),INTRON(MODIFIER||||244|RABEP2|protein_coding|CODING|ENST00000568703|2|1),INTRON(MODIFIER||||279|RABEP2|protein_coding|CODING|ENST00000567483|3|1),INTRON(MODIFIER||||43|RABEP2|protein_coding|CODING|ENST00000566762|2|1),INTRON(MODIFIER||||498|RABEP2|protein_coding|CODING|ENST00000544477|2|1),INTRON(MODIFIER||||533|RABEP2|protein_coding|CODING|ENST00000357573|3|1),INTRON(MODIFIER||||569|RABEP2|protein_coding|CODING|ENST00000358201|3|1),INTRON(MODIFIER||||71|RABEP2|protein_coding|CODING|ENST00000561501|2|1),INTRON(MODIFIER|||||RABEP2|retained_intron|CODING|ENST00000562590|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	42:0:0:0:0,0:42,42:0,0:0,0	83:1:0:0:0,0:76,78:1,1:5,5
16	28927457	.	A	G	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||RABEP2|nonsense_mediated_decay|CODING|ENST00000563577||1),DOWNSTREAM(MODIFIER|||||RABEP2|processed_transcript|CODING|ENST00000561803||1),DOWNSTREAM(MODIFIER|||||RABEP2|processed_transcript|CODING|ENST00000562475||1),DOWNSTREAM(MODIFIER|||||RABEP2|processed_transcript|CODING|ENST00000564473||1),DOWNSTREAM(MODIFIER|||||RABEP2|retained_intron|CODING|ENST00000564579||1),DOWNSTREAM(MODIFIER|||||RABEP2|retained_intron|CODING|ENST00000570030||1),INTRON(MODIFIER||||244|RABEP2|protein_coding|CODING|ENST00000568703|2|1),INTRON(MODIFIER||||279|RABEP2|protein_coding|CODING|ENST00000567483|3|1),INTRON(MODIFIER||||43|RABEP2|protein_coding|CODING|ENST00000566762|2|1),INTRON(MODIFIER||||498|RABEP2|protein_coding|CODING|ENST00000544477|2|1),INTRON(MODIFIER||||533|RABEP2|protein_coding|CODING|ENST00000357573|3|1),INTRON(MODIFIER||||569|RABEP2|protein_coding|CODING|ENST00000358201|3|1),INTRON(MODIFIER||||71|RABEP2|protein_coding|CODING|ENST00000561501|2|1),INTRON(MODIFIER|||||RABEP2|retained_intron|CODING|ENST00000562590|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	42:0:0:0:42,42:0,0:0,0:0,0	83:1:0:0:77,79:0,0:5,5:0,0
16	29248540	rs79248369	C	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=29248540;dbSNPBuildID=131;SSR=0;SAO=0;VP=050000000001000102000100;WGT=1;VC=SNV;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:0:0:0:0,0:36,36:0,0:0,0	101:4:0:0:5,8:91,92:0,0:1,1
16	29248541	rs79095720	G	A	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=29248541;dbSNPBuildID=131;SSR=0;SAO=0;VP=050000000001000102000100;WGT=1;VC=SNV;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:0:0:0:0,0:0,0:36,36:0,0	99:4:0:0:6,9:0,0:89,90:0,0
16	29509540	.	G	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||249|SNX29P2|protein_coding|CODING|ENST00000398878|12|1),INTRON(MODIFIER||||594|RP11-231C14.4|protein_coding|CODING|ENST00000550665|2|1),INTRON(MODIFIER|||||RP11-231C14.3|unprocessed_pseudogene|NON_CODING|ENST00000411495|1|1),INTRON(MODIFIER|||||RP11-231C14.4|nonsense_mediated_decay|CODING|ENST00000550690|3|1),INTRON(MODIFIER|||||RP11-231C14.4|nonsense_mediated_decay|CODING|ENST00000551448|3|1),UPSTREAM(MODIFIER|||||RP11-231C14.4|nonsense_mediated_decay|CODING|ENST00000549733||1),UPSTREAM(MODIFIER|||||RP11-231C14.4|retained_intron|CODING|ENST00000548346||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	28:0:0:0:0,0:0,0:28,40:0,0	62:3:0:0:7,10:0,1:52,79:0,0
16	29811604	.	T	C	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||184|KIF22|protein_coding|CODING|ENST00000569636||1),DOWNSTREAM(MODIFIER|||||KIF22|nonsense_mediated_decay|CODING|ENST00000570173||1),DOWNSTREAM(MODIFIER|||||KIF22|processed_transcript|CODING|ENST00000563263||1),DOWNSTREAM(MODIFIER|||||KIF22|retained_intron|CODING|ENST00000563666||1),INTRON(MODIFIER||||597|KIF22|protein_coding|CODING|ENST00000400751|8|1),INTRON(MODIFIER||||597|KIF22|protein_coding|CODING|ENST00000561482|8|1),INTRON(MODIFIER||||611|KIF22|protein_coding|CODING|ENST00000569382|7|1),INTRON(MODIFIER||||665|KIF22|protein_coding|CODING|ENST00000160827|8|1),INTRON(MODIFIER||||72|KIF22|protein_coding|CODING|ENST00000400750|8|1),UPSTREAM(MODIFIER|||||KIF22|nonsense_mediated_decay|CODING|ENST00000568312||1),UPSTREAM(MODIFIER|||||KIF22|retained_intron|CODING|ENST00000565736||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:1:0:0:0,0:0,0:0,0:36,37	114:2:0:0:0,0:10,12:1,1:101,102
16	30601031	.	T	C	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-146F11.5|antisense|NON_CODING|ENST00000563540|1|1),UPSTREAM(MODIFIER||||390|ZNF785|protein_coding|CODING|ENST00000470110||1),UPSTREAM(MODIFIER||||405|ZNF785|protein_coding|CODING|ENST00000395216||1),UPSTREAM(MODIFIER||||69|ZNF785|protein_coding|CODING|ENST00000567773||1),UPSTREAM(MODIFIER|||||AC002310.17|processed_pseudogene|NON_CODING|ENST00000564755||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:0:0:0:0,0:0,0:0,0:37,38	113:3:0:0:0,0:9,10:0,0:101,103
16	31116128	.	T	G	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER||||215|BCKDK|protein_coding|CODING|ENST00000484226||1),UPSTREAM(MODIFIER||||335|BCKDK|protein_coding|CODING|ENST00000287507||1),UPSTREAM(MODIFIER||||365|BCKDK|protein_coding|CODING|ENST00000394950||1),UPSTREAM(MODIFIER||||412|BCKDK|protein_coding|CODING|ENST00000219794||1),UPSTREAM(MODIFIER||||412|BCKDK|protein_coding|CODING|ENST00000394951||1),UPSTREAM(MODIFIER||||59|BCKDK|protein_coding|CODING|ENST00000561755||1),UPSTREAM(MODIFIER||||87|BCKDK|protein_coding|CODING|ENST00000567676||1),UPSTREAM(MODIFIER|||||AC135050.2|miRNA|NON_CODING|ENST00000517000||1),UPSTREAM(MODIFIER|||||BCKDK|nonsense_mediated_decay|CODING|ENST00000567530||1),UPSTREAM(MODIFIER|||||BCKDK|retained_intron|CODING|ENST00000566568||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	42:4:1:0:1,1:0,2:0,2:37,58	63:14:1:0:0,1:1,4:4,14:44,76
16	31971621	.	G	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||RP11-170L3.6|processed_pseudogene|NON_CODING|ENST00000568304||1),UPSTREAM(MODIFIER|||||RP11-170L3.7|processed_pseudogene|NON_CODING|ENST00000356559||1),UPSTREAM(MODIFIER|||||RP11-170L3.7|processed_pseudogene|NON_CODING|ENST00000563488||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:1:0:0:0,0:0,0:28,31:0,0	98:8:0:0:0,0:0,0:82,97:8,13
16	32105383	.	C	T	.	PASS	NT=ref;QSS=41;QSS_NT=41;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	126:2:0:0:0,0:123,143:0,0:1,2	396:2:0:0:1,1:372,453:0,0:21,26
16	32108700	.	A	C	.	PASS	NT=ref;QSS=33;QSS_NT=33;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	108:0:0:0:107,127:1,2:0,0:0,0	250:4:0:0:228,289:18,22:0,0:0,1
16	32113179	.	T	A	.	PASS	NT=ref;QSS=40;QSS_NT=40;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||RP11-1166P10.8|3prime_overlapping_ncrna|NON_CODING|ENST00000564145||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	83:0:0:0:0,0:0,0:0,0:83,94	213:3:0:0:14,17:0,0:0,0:196,225
16	32115426	.	T	A	.	PASS	NT=ref;QSS=28;QSS_NT=28;SGT=TT->AT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER|||||RP11-1166P10.8|3prime_overlapping_ncrna|NON_CODING|ENST00000564145|4|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	67:0:0:0:0,1:0,0:0,0:67,75	252:7:0:0:17,21:0,0:0,1:228,268
16	32128454	.	T	A	.	PASS	NT=ref;QSS=34;QSS_NT=34;SGT=TT->AT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=DOWNSTREAM(MODIFIER|||||RP11-1166P10.7|processed_pseudogene|NON_CODING|ENST00000566120||1),EXON(MODIFIER|||||RP11-1166P10.8|3prime_overlapping_ncrna|NON_CODING|ENST00000564145|4|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	90:9:0:0:0,1:0,0:1,3:80,94	149:13:0:0:8,10:0,0:1,2:127,168
16	32137849	.	A	T	.	PASS	NT=ref;QSS=29;QSS_NT=29;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-1166P10.8|3prime_overlapping_ncrna|NON_CODING|ENST00000564145|1|1),UPSTREAM(MODIFIER|||||RP11-1166P10.9|lincRNA|NON_CODING|ENST00000568083||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	59:1:0:0:58,68:0,0:0,0:0,1	164:2:0:0:155,177:0,0:0,0:7,8
16	32137918	rs76249320	G	C	.	PASS	NT=ref;QSS=24;QSS_NT=24;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-1166P10.8|3prime_overlapping_ncrna|NON_CODING|ENST00000564145|1|1),UPSTREAM(MODIFIER|||||RP11-1166P10.9|lincRNA|NON_CODING|ENST00000568083||1);RSPOS=32137918;dbSNPBuildID=131;SSR=0;SAO=0;VP=050000000001000102000100;WGT=1;VC=SNV;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	51:3:0:0:0,0:0,0:48,59:0,0	128:3:0:0:0,0:7,8:116,134:2,2
16	32139118	.	G	T	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-1166P10.8|3prime_overlapping_ncrna|NON_CODING|ENST00000564145|1|1),UPSTREAM(MODIFIER|||||RP11-1166P10.9|lincRNA|NON_CODING|ENST00000568083||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:0:0:0:0,0:0,0:37,53:0,0	153:1:0:0:0,0:0,0:142,191:10,15
16	32139156	.	T	C	.	PASS	NT=ref;QSS=26;QSS_NT=26;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-1166P10.8|3prime_overlapping_ncrna|NON_CODING|ENST00000564145|1|1),UPSTREAM(MODIFIER|||||RP11-1166P10.9|lincRNA|NON_CODING|ENST00000568083||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	53:1:0:0:0,0:0,0:0,0:52,74	203:0:0:0:0,0:16,23:0,0:187,245
16	32139206	.	C	A	.	PASS	NT=ref;QSS=27;QSS_NT=27;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-1166P10.8|3prime_overlapping_ncrna|NON_CODING|ENST00000564145|1|1),UPSTREAM(MODIFIER|||||RP11-1166P10.9|lincRNA|NON_CODING|ENST00000568083||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	55:0:0:0:0,0:55,81:0,0:0,0	227:1:0:0:17,25:209,281:0,1:0,0
16	32141164	.	A	C	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=AA->AC;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER|||||RP11-1166P10.8|3prime_overlapping_ncrna|NON_CODING|ENST00000564145|1|1),UPSTREAM(MODIFIER|||||RP11-1166P10.9|lincRNA|NON_CODING|ENST00000568083||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	110:2:0:0:108,123:0,0:0,0:0,0	345:4:0:0:328,382:13,15:0,0:0,0
16	32142835	.	T	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=EXON(MODIFIER|||||RP11-1166P10.9|lincRNA|NON_CODING|ENST00000568083|1|1),INTRON(MODIFIER|||||RP11-1166P10.8|3prime_overlapping_ncrna|NON_CODING|ENST00000564145|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:1:0:0:0,0:0,2:0,0:37,42	121:14:0:0:0,0:9,12:0,0:98,134
16	32149510	.	T	A	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=EXON(MODIFIER|||||RP11-1166P10.9|lincRNA|NON_CODING|ENST00000568083|1|1),INTRON(MODIFIER|||||RP11-1166P10.8|3prime_overlapping_ncrna|NON_CODING|ENST00000564145|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:0:0:0:0,1:0,0:0,0:38,49	126:1:0:0:13,15:1,1:0,0:111,125
16	32315409	.	T	C	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=EXON(MODIFIER|||||RP11-17M15.2|processed_transcript|NON_CODING|ENST00000568567|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:3:0:0:0,0:0,0:0,0:34,39	88:1:0:0:0,0:13,14:0,0:74,76
16	32327426	.	T	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->AT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	79:0:0:0:0,3:0,0:0,0:79,83	177:4:0:0:13,15:0,0:0,1:160,181
16	32327438	rs201347845	G	C	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->CG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=32327438;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	84:1:0:0:0,0:0,3:83,88:0,0	185:2:0:0:0,0:14,16:169,188:0,0
16	32327681	rs201234264	A	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=32327681;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	98:5:0:0:93,101:0,1:0,0:0,3	177:10:0:0:157,173:1,1:0,0:9,12
16	32327691	rs202191633	C	T	.	PASS	NT=ref;QSS=43;QSS_NT=43;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=32327691;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	93:3:0:0:0,0:90,98:0,0:0,1	168:7:0:0:1,1:150,163:0,0:10,13
16	32327709	rs200443226	T	C	.	PASS	NT=ref;QSS=26;QSS_NT=26;SGT=TT->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=32327709;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	82:0:0:0:0,0:0,1:1,1:81,85	158:4:0:0:1,1:12,14:1,1:140,151
16	32346170	.	T	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	66:1:1:0:0,0:1,1:0,0:64,68	213:3:0:0:1,1:9,10:0,0:200,210
16	32367423	rs199846175	C	T	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=CC->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=DOWNSTREAM(MODIFIER|||||RP11-17M15.4|unprocessed_pseudogene|NON_CODING|ENST00000562853||1),INTERGENIC(MODIFIER||||||||||1);RSPOS=32367423;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	123:2:0:0:1,1:118,123:1,1:1,2	281:3:0:0:0,0:264,271:1,1:13,13
16	32401535	.	A	T	.	PASS	NT=ref;QSS=37;QSS_NT=37;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-626K17.5|unprocessed_pseudogene|NON_CODING|ENST00000562908|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	79:1:0:0:77,84:1,1:0,0:0,0	234:3:0:0:220,243:0,0:1,1:10,11
16	32421138	rs202168862	G	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-626K17.5|unprocessed_pseudogene|NON_CODING|ENST00000562908|4|1);RSPOS=32421138;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	74:1:0:0:0,0:0,0:72,73:1,1	218:0:0:0:0,0:0,0:204,205:14,23
16	32498097	.	A	G	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=AA->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	57:0:0:0:57,69:0,0:0,3:0,0	182:5:0:0:167,208:0,0:10,21:0,0
16	32578017	.	A	C	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=AA->AC;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	69:2:0:0:67,69:0,2:0,0:0,1	215:4:0:0:197,201:14,16:0,0:0,0
16	32813961	.	G	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	60:0:0:0:0,1:0,0:60,68:0,0	163:1:0:0:18,21:0,0:143,178:1,1
16	32813963	.	G	A	.	PASS	NT=ref;QSS=29;QSS_NT=29;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	59:0:0:0:0,0:0,0:59,67:0,0	158:0:0:0:18,21:0,1:140,173:0,0
16	32820994	rs199674402	G	C	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=GG->CG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=DOWNSTREAM(MODIFIER|||||RP11-67H24.1|processed_pseudogene|NON_CODING|ENST00000561729||1),INTRON(MODIFIER|||||RP11-67H24.2|lincRNA|NON_CODING|ENST00000569859|1|1);RSPOS=32820994;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	80:3:0:0:0,0:0,2:77,80:0,0	198:1:0:0:0,0:8,8:189,195:0,1
16	32829860	rs201081952	A	T	.	PASS	NT=ref;QSS=33;QSS_NT=33;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-67H24.2|lincRNA|NON_CODING|ENST00000569859|3|1);RSPOS=32829860;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	68:1:0:0:67,71:0,0:0,0:0,0	256:1:0:0:245,252:0,0:0,0:10,15
16	32833680	.	T	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-67H24.2|lincRNA|NON_CODING|ENST00000569859|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	90:5:0:0:0,0:0,1:0,0:85,104	218:19:0:0:0,0:7,10:0,0:192,239
16	32834297	.	T	C	.	PASS	NT=ref;QSS=29;QSS_NT=29;SGT=TT->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER|||||RP11-67H24.2|lincRNA|NON_CODING|ENST00000569859|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	125:1:0:0:2,2:1,5:0,0:121,143	253:7:0:0:2,4:12,16:1,1:231,276
16	32837484	.	G	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->CG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=DOWNSTREAM(MODIFIER|||||RP11-67H24.2|lincRNA|NON_CODING|ENST00000569859||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	99:4:0:0:0,0:1,3:94,106:0,0	294:1:0:0:0,0:18,22:275,311:0,0
16	32837492	.	G	A	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=GG->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=DOWNSTREAM(MODIFIER|||||RP11-67H24.2|lincRNA|NON_CODING|ENST00000569859||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	96:5:0:0:1,2:0,1:90,100:0,0	284:1:0:0:20,24:0,0:263,297:0,0
16	32841247	rs76686616	A	C	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=AA->AC;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=32841247;dbSNPBuildID=131;SSR=0;SAO=0;VP=050000000009040102000100;WGT=1;VC=SNV;CFL;VLD;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	105:4:0:0:101,110:0,5:0,0:0,0	401:15:0:0:364,415:21,35:0,0:1,2
16	32846625	.	T	C	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=TT->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	101:1:0:0:0,0:1,2:0,0:99,106	318:4:0:0:0,0:12,16:0,0:302,340
16	32911879	rs690586	A	G	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||RP11-989E6.4|unprocessed_pseudogene|NON_CODING|ENST00000565463||1);RSPOS=32911879;dbSNPBuildID=83;SSR=0;SAO=0;VP=050000000001000002000100;WGT=1;VC=SNV;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:0:0:0:36,36:0,0:0,0:0,0	107:0:0:0:95,96:0,0:12,16:0,0
16	32985306	.	A	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-19N8.2|processed_transcript|NON_CODING|ENST00000567619|1|1),UPSTREAM(MODIFIER|||||RP11-989E6.6|processed_pseudogene|NON_CODING|ENST00000568055||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:0:0:0:30,31:0,0:0,0:0,0	125:1:0:0:111,113:0,0:13,17:0,0
16	33046295	rs76888165	A	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=33046295;dbSNPBuildID=131;SSR=0;SAO=0;VP=050000000009040102000100;WGT=1;VC=SNV;CFL;VLD;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	105:5:0:0:99,186:0,0:0,0:1,4	295:9:0:0:275,503:0,0:1,1:10,17
16	33051735	.	G	A	.	PASS	NT=ref;QSS=36;QSS_NT=36;SGT=GG->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=DOWNSTREAM(MODIFIER|||||RP11-19N8.4|lincRNA|NON_CODING|ENST00000561541||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	97:2:0:0:0,2:0,0:95,119:0,0	322:3:0:0:16,25:0,1:303,362:0,0
16	33052592	.	C	A	.	PASS	NT=ref;QSS=28;QSS_NT=28;SGT=CC->AC;SOMATIC;TQSS=2;TQSS_NT=2;EFF=DOWNSTREAM(MODIFIER|||||RP11-19N8.4|lincRNA|NON_CODING|ENST00000561541||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	110:1:0:0:1,2:108,119:0,0:0,0	296:5:0:0:17,22:274,320:0,0:0,0
16	33052842	.	T	G	.	PASS	NT=ref;QSS=26;QSS_NT=26;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||RP11-19N8.4|lincRNA|NON_CODING|ENST00000561541||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	103:0:0:0:0,0:0,0:1,1:102,109	286:3:0:0:0,0:0,0:25,30:258,298
16	33052879	.	A	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||RP11-19N8.4|lincRNA|NON_CODING|ENST00000561541||1),DOWNSTREAM(MODIFIER|||||RP11-19N8.4|lincRNA|NON_CODING|ENST00000564165||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	79:1:0:0:77,83:0,0:0,0:1,1	198:4:0:0:174,202:0,0:0,0:20,24
16	33059862	.	A	T	.	PASS	NT=ref;QSS=30;QSS_NT=30;SGT=AA->AT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER|||||RP11-19N8.4|lincRNA|NON_CODING|ENST00000561541|1|1),INTRON(MODIFIER|||||RP11-19N8.4|lincRNA|NON_CODING|ENST00000564165|4|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	67:1:0:0:66,89:0,0:0,0:0,1	210:11:0:0:190,249:0,0:0,0:9,13
16	33060150	.	G	C	.	PASS	NT=ref;QSS=35;QSS_NT=35;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-19N8.4|lincRNA|NON_CODING|ENST00000561541|1|1),INTRON(MODIFIER|||||RP11-19N8.4|lincRNA|NON_CODING|ENST00000564165|4|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	82:9:0:0:0,3:0,0:73,111:0,0	246:17:0:0:1,2:10,16:218,330:0,0
16	33063513	.	C	T	.	PASS	NT=ref;QSS=31;QSS_NT=31;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-19N8.4|lincRNA|NON_CODING|ENST00000561541|1|1),INTRON(MODIFIER|||||RP11-19N8.4|lincRNA|NON_CODING|ENST00000564165|4|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	64:0:0:0:0,0:64,79:0,0:0,0	180:5:0:0:0,0:165,208:0,0:10,15
16	33063618	.	G	A	.	PASS	NT=ref;QSS=27;QSS_NT=27;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-19N8.4|lincRNA|NON_CODING|ENST00000561541|1|1),INTRON(MODIFIER|||||RP11-19N8.4|lincRNA|NON_CODING|ENST00000564165|4|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	55:0:0:0:0,1:0,0:55,66:0,1	127:2:0:0:11,15:0,0:114,141:0,0
16	33063628	.	G	A	.	PASS	NT=ref;QSS=27;QSS_NT=27;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-19N8.4|lincRNA|NON_CODING|ENST00000561541|1|1),INTRON(MODIFIER|||||RP11-19N8.4|lincRNA|NON_CODING|ENST00000564165|4|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	56:1:0:0:0,1:0,0:55,69:0,0	137:2:0:0:11,13:0,0:124,153:0,0
16	33064568	.	G	A	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-19N8.4|lincRNA|NON_CODING|ENST00000561541|1|1),INTRON(MODIFIER|||||RP11-19N8.4|lincRNA|NON_CODING|ENST00000564165|4|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	44:1:0:0:0,0:1,1:42,48:0,0	152:2:0:0:8,9:1,1:141,156:0,1
16	33076315	.	A	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=DOWNSTREAM(MODIFIER|||||RP11-19N8.3|processed_pseudogene|NON_CODING|ENST00000569033||1),INTRON(MODIFIER|||||RP11-19N8.4|lincRNA|NON_CODING|ENST00000561541|1|1),INTRON(MODIFIER|||||RP11-19N8.4|lincRNA|NON_CODING|ENST00000564165|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	57:8:4:0:48,73:0,0:1,2:0,1	206:32:9:0:164,244:0,0:10,16:0,0
16	33082103	rs200965965	G	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER|||||RP11-19N8.4|lincRNA|NON_CODING|ENST00000561541|1|1),INTRON(MODIFIER|||||RP11-19N8.4|lincRNA|NON_CODING|ENST00000564165|1|1);RSPOS=33082103;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:0:0:0:0,2:0,0:32,37:0,1	115:0:0:0:14,18:0,0:101,111:0,0
16	33082150	rs200441351	G	T	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-19N8.4|lincRNA|NON_CODING|ENST00000561541|1|1),INTRON(MODIFIER|||||RP11-19N8.4|lincRNA|NON_CODING|ENST00000564165|1|1);RSPOS=33082150;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:0:0:0:0,0:0,0:36,41:0,1	108:1:0:0:0,0:0,0:96,107:11,14
16	33083124	.	C	T	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-19N8.4|lincRNA|NON_CODING|ENST00000561541|1|1),INTRON(MODIFIER|||||RP11-19N8.4|lincRNA|NON_CODING|ENST00000564165|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	126:0:0:0:0,0:124,136:0,0:2,3	302:1:0:0:0,1:286,333:0,0:15,19
16	33337304	rs78263800	T	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=EXON(MODIFIER|||||RP11-23E10.3|lincRNA|NON_CODING|ENST00000567464|1|1);RSPOS=33337304;dbSNPBuildID=131;SSR=0;SAO=0;VP=050000000005000102000100;WGT=1;VC=SNV;ASP;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	70:3:0:0:0,1:0,3:0,0:67,70	208:6:0:0:3,4:14,19:1,1:184,189
16	33518715	.	T	C	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	112:5:0:0:0,0:1,3:1,1:105,119	265:8:0:0:0,0:13,14:0,0:244,277
16	33520984	rs113895431	T	A	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=33520984;dbSNPBuildID=132;SSR=0;SAO=0;VP=050100000001000102000100;WGT=1;VC=SNV;SLO;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	79:0:0:0:1,1:0,0:0,0:78,94	233:2:0:0:11,12:0,0:0,0:220,246
16	33521983	.	G	A	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	111:3:0:0:1,1:0,0:107,121:0,0	291:13:0:0:10,12:0,0:268,309:0,0
16	33522560	.	T	C	.	PASS	NT=ref;QSS=52;QSS_NT=52;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	110:1:0:0:0,0:0,0:0,0:109,126	364:1:0:0:0,0:12,15:0,0:351,393
16	33574867	.	G	C	.	PASS	NT=ref;QSS=37;QSS_NT=37;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||RP11-104C4.4|processed_pseudogene|NON_CODING|ENST00000563187||1),DOWNSTREAM(MODIFIER|||||RP11-104C4.5|processed_pseudogene|NON_CODING|ENST00000567922||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	76:1:0:0:0,0:0,0:75,76:0,0	181:1:0:0:0,0:9,9:169,178:2,2
16	33575689	rs201129484	G	A	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=GG->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=DOWNSTREAM(MODIFIER|||||RP11-104C4.4|processed_pseudogene|NON_CODING|ENST00000563187||1),DOWNSTREAM(MODIFIER|||||RP11-104C4.5|processed_pseudogene|NON_CODING|ENST00000567922||1),INTERGENIC(MODIFIER||||||||||1);RSPOS=33575689;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	115:1:0:0:1,2:0,0:113,123:0,0	302:4:0:0:16,18:0,0:281,306:1,1
16	33575690	rs201888469	G	T	.	PASS	NT=ref;QSS=25;QSS_NT=25;SGT=GG->GT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=DOWNSTREAM(MODIFIER|||||RP11-104C4.4|processed_pseudogene|NON_CODING|ENST00000563187||1),DOWNSTREAM(MODIFIER|||||RP11-104C4.5|processed_pseudogene|NON_CODING|ENST00000567922||1),INTERGENIC(MODIFIER||||||||||1);RSPOS=33575690;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	115:1:0:0:1,1:0,1:112,121:1,2	301:4:0:0:1,1:2,3:278,301:16,18
16	33575892	.	G	A	.	PASS	NT=ref;QSS=37;QSS_NT=37;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||RP11-104C4.4|processed_pseudogene|NON_CODING|ENST00000563187||1),DOWNSTREAM(MODIFIER|||||RP11-104C4.5|processed_pseudogene|NON_CODING|ENST00000567922||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	77:1:0:0:0,0:0,0:76,83:0,0	246:3:0:0:11,12:0,0:232,242:0,1
16	33585082	.	A	T	.	PASS	NT=ref;QSS=29;QSS_NT=29;SGT=AA->AT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	125:6:0:0:119,143:0,0:0,0:0,2	359:14:0:0:334,405:1,1:0,0:10,13
16	33610152	.	C	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||RP11-104C4.3|processed_pseudogene|NON_CODING|ENST00000570121||1),INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||RP11-104C4.2|processed_pseudogene|NON_CODING|ENST00000566387||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	82:0:0:0:0,0:82,82:0,0:0,0	210:0:0:0:12,12:197,198:1,1:0,0
16	33656026	.	A	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||RP11-812E19.7|lincRNA|NON_CODING|ENST00000563019||1),INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||IGHV3OR16-7|unprocessed_pseudogene|NON_CODING|ENST00000438532||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:0:0:0:35,35:0,0:0,0:0,0	61:0:0:0:55,59:6,11:0,0:0,0
16	33847027	.	A	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-598D12.2|unprocessed_pseudogene|NON_CODING|ENST00000566112|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	70:0:0:0:70,84:0,0:0,1:0,0	194:3:0:0:183,217:0,0:8,10:0,0
16	33847530	.	G	A	.	PASS	NT=ref;QSS=25;QSS_NT=25;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-598D12.2|unprocessed_pseudogene|NON_CODING|ENST00000566112|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	52:1:0:0:0,0:0,0:51,66:0,0	141:2:0:0:8,8:0,0:131,158:0,0
16	33847560	.	C	T	.	PASS	NT=ref;QSS=29;QSS_NT=29;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-598D12.2|unprocessed_pseudogene|NON_CODING|ENST00000566112|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	59:0:0:0:0,0:59,72:0,0:0,0	153:2:0:0:0,0:144,174:0,0:7,8
16	33847572	.	C	A	.	PASS	NT=ref;QSS=28;QSS_NT=28;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-598D12.2|unprocessed_pseudogene|NON_CODING|ENST00000566112|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	57:0:0:0:0,0:57,70:0,0:0,0	153:5:0:0:8,9:140,174:0,1:0,0
16	33849396	.	C	T	.	PASS	NT=ref;QSS=26;QSS_NT=26;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-598D12.2|unprocessed_pseudogene|NON_CODING|ENST00000566112|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	53:0:0:0:0,0:53,64:0,0:0,0	194:2:0:0:0,0:184,231:0,0:8,12
16	33849943	rs201800237	C	G	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-598D12.2|unprocessed_pseudogene|NON_CODING|ENST00000566112|1|1);RSPOS=33849943;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	45:0:0:0:1,1:44,44:0,0:0,0	102:2:0:0:0,0:94,95:6,17:0,0
16	33854472	.	C	A	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||RP11-598D12.2|unprocessed_pseudogene|NON_CODING|ENST00000566112||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	41:1:0:0:0,1:40,55:0,0:0,1	100:0:0:0:6,9:92,113:1,1:1,1
16	33858169	.	A	G	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||RP11-598D12.2|unprocessed_pseudogene|NON_CODING|ENST00000566112||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:0:0:0:36,37:0,0:0,0:0,0	89:0:0:0:83,86:0,0:6,7:0,0
16	33863739	.	G	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	43:0:0:0:0,1:0,0:43,44:0,0	104:1:0:0:6,10:0,0:97,100:0,0
16	33874313	.	A	G	.	PASS	NT=ref;QSS=42;QSS_NT=42;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	94:3:0:0:88,191:1,2:0,7:2,9	183:9:0:0:162,430:0,5:12,35:0,24
16	33878965	.	T	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=TT->AT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	51:3:0:0:0,7:0,0:0,0:48,112	127:12:0:0:8,30:0,3:0,0:107,303
16	33919718	.	G	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||CTD-2522B17.8|processed_pseudogene|NON_CODING|ENST00000574771||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	118:1:0:0:1,3:0,1:116,151:0,0	298:4:0:0:10,11:1,1:283,348:0,0
16	33926475	rs138647538	A	C	.	PASS	NT=ref;QSS=30;QSS_NT=30;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||CTD-2522B17.8|processed_pseudogene|NON_CODING|ENST00000574771||1),INTERGENIC(MODIFIER||||||||||1);RSPOS=33926475;dbSNPBuildID=134;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	62:1:0:0:61,76:0,1:0,0:0,0	207:1:0:0:191,245:15,18:0,0:0,1
16	33926492	rs144608507	C	T	.	PASS	NT=ref;QSS=32;QSS_NT=32;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||CTD-2522B17.8|processed_pseudogene|NON_CODING|ENST00000574771||1),INTERGENIC(MODIFIER||||||||||1);RSPOS=33926492;dbSNPBuildID=134;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	67:1:0:0:0,0:66,82:0,0:0,0	204:5:0:0:0,0:185,238:0,0:14,17
16	33940348	rs146689645	A	G	.	PASS	NT=ref;QSS=33;QSS_NT=33;SGT=AA->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=DOWNSTREAM(MODIFIER|||||CTD-2522B17.4|processed_pseudogene|NON_CODING|ENST00000566845||1),INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||CTD-2522B17.5|processed_pseudogene|NON_CODING|ENST00000566406||1),UPSTREAM(MODIFIER|||||CTD-2522B17.6|processed_pseudogene|NON_CODING|ENST00000566374||1),UPSTREAM(MODIFIER|||||PCMTD1P2|processed_pseudogene|NON_CODING|ENST00000565017||1);RSPOS=33940348;dbSNPBuildID=134;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	99:1:0:0:98,122:0,0:0,2:0,0	253:2:0:0:240,309:0,0:11,11:0,0
16	33941042	rs140365331	G	A	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||AC136932.2|miRNA|NON_CODING|ENST00000583871||1),DOWNSTREAM(MODIFIER|||||CTD-2522B17.4|processed_pseudogene|NON_CODING|ENST00000566845||1),INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||CTD-2522B17.5|processed_pseudogene|NON_CODING|ENST00000566406||1),UPSTREAM(MODIFIER|||||CTD-2522B17.6|processed_pseudogene|NON_CODING|ENST00000566374||1),UPSTREAM(MODIFIER|||||PCMTD1P2|processed_pseudogene|NON_CODING|ENST00000565017||1);RSPOS=33941042;dbSNPBuildID=134;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	116:0:0:0:1,3:0,0:115,152:0,0	291:7:0:0:10,17:0,0:274,362:0,0
16	33941111	.	T	C	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||AC136932.2|miRNA|NON_CODING|ENST00000583871||1),DOWNSTREAM(MODIFIER|||||CTD-2522B17.4|processed_pseudogene|NON_CODING|ENST00000566845||1),INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||CTD-2522B17.5|processed_pseudogene|NON_CODING|ENST00000566406||1),UPSTREAM(MODIFIER|||||CTD-2522B17.6|processed_pseudogene|NON_CODING|ENST00000566374||1),UPSTREAM(MODIFIER|||||PCMTD1P2|processed_pseudogene|NON_CODING|ENST00000565017||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	103:11:0:0:0,0:1,2:0,1:91,128	268:31:0:0:0,1:9,18:1,1:227,322
16	33943046	.	C	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||AC136932.2|miRNA|NON_CODING|ENST00000583871||1),DOWNSTREAM(MODIFIER|||||CTD-2522B17.4|processed_pseudogene|NON_CODING|ENST00000566845||1),DOWNSTREAM(MODIFIER|||||PCMTD1P2|processed_pseudogene|NON_CODING|ENST00000565017||1),INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||CTD-2522B17.5|processed_pseudogene|NON_CODING|ENST00000566406||1),UPSTREAM(MODIFIER|||||CTD-2522B17.6|processed_pseudogene|NON_CODING|ENST00000566374||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	102:0:2:0:0,0:101,142:0,0:1,3	263:13:9:0:0,0:238,321:0,1:12,22
16	33947796	rs80287492	T	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->GT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=DOWNSTREAM(MODIFIER|||||CTD-2522B17.6|processed_pseudogene|NON_CODING|ENST00000566374||1),DOWNSTREAM(MODIFIER|||||LINC00273|lincRNA|NON_CODING|ENST00000567668||1),INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||AC136932.2|miRNA|NON_CODING|ENST00000583871||1),UPSTREAM(MODIFIER|||||CTD-2522B17.4|processed_pseudogene|NON_CODING|ENST00000566845||1);RSPOS=33947796;dbSNPBuildID=131;SSR=0;SAO=0;VP=050100000005000102000100;WGT=1;VC=SNV;SLO;ASP;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	49:2:0:0:0,5:0,0:0,1:47,47	99:2:0:0:1,13:0,0:7,11:89,89
16	33957637	.	C	T	.	PASS	NT=ref;QSS=23;QSS_NT=23;SGT=CC->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=DOWNSTREAM(MODIFIER||||462|LINC00273|protein_coding|CODING|ENST00000539813||1),INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||AC136932.1|miRNA|NON_CODING|ENST00000385251||1),UPSTREAM(MODIFIER|||||LINC00273|lincRNA|NON_CODING|ENST00000567668||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	126:3:0:0:0,0:122,165:0,0:1,3	288:9:0:0:0,0:263,361:0,1:16,22
16	34175282	rs113823849	G	T	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=34175282;dbSNPBuildID=132;SSR=0;SAO=0;VP=050100000005000102000100;WGT=1;VC=SNV;SLO;ASP;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	45:2:0:0:0,0:0,0:43,47:0,0	135:0:0:0:0,0:0,0:126,136:9,13
16	34178218	.	T	C	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=TT->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	95:3:0:0:0,0:0,1:0,0:92,117	176:6:0:0:0,0:7,9:0,1:163,222
16	34193358	.	C	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:0:0:0:0,0:35,38:0,0:0,0	126:3:0:0:0,0:117,126:0,0:6,8
16	35219448	.	C	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	44:6:0:0:0,1:38,89:0,0:0,7	119:11:0:0:0,0:101,220:0,1:7,15
16	35234117	.	G	A	.	PASS	NT=ref;QSS=34;QSS_NT=34;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	76:2:0:0:0,1:0,1:74,110:0,0	112:3:0:0:5,15:0,0:103,187:1,2
16	35234153	.	T	C	.	PASS	NT=ref;QSS=34;QSS_NT=34;SGT=TT->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	76:4:0:0:0,0:0,2:0,0:72,108	112:5:0:0:0,0:6,18:0,0:101,185
16	35235676	.	G	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	106:42:0:0:0,2:0,1:62,222:2,7	303:115:0:0:0,3:0,3:180,619:8,24
16	35279151	.	G	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	97:22:0:0:1,5:1,2:73,227:0,0	286:52:0:0:15,26:1,2:218,567:0,9
16	35281419	.	T	C	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	47:4:0:0:0,0:0,2:0,1:43,73	134:13:2:0:0,0:5,13:0,0:116,232
16	46448328	.	G	A	.	PASS	NT=ref;QSS=37;QSS_NT=37;SGT=GG->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	108:11:0:0:0,5:0,0:96,195:1,4	373:51:0:0:14,52:0,0:301,513:7,22
16	46454353	.	A	T	.	PASS	NT=ref;QSS=35;QSS_NT=35;SGT=AA->AT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	122:33:43:0:89,189:0,0:0,0:0,4	394:126:136:0:256,549:0,1:0,0:12,66
16	46467876	.	A	T	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=AA->AT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	56:0:0:0:56,61:0,0:0,0:0,1	162:1:0:0:154,169:0,0:0,0:7,11
16	46467923	.	T	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=TT->AT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	50:0:0:0:0,1:0,0:0,0:50,56	160:4:0:0:7,11:0,0:0,0:149,176
16	46468174	.	A	G	.	PASS	NT=ref;QSS=25;QSS_NT=25;SGT=AA->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	69:0:0:0:69,83:0,0:0,1:0,0	218:4:0:0:203,263:0,0:11,14:0,0
16	46470869	.	C	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	47:0:0:0:3,3:44,55:0,0:0,1	199:0:0:0:1,1:181,232:0,0:17,20
16	46470911	.	C	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->AC;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	46:1:0:0:0,1:45,53:0,0:0,0	167:2:0:0:12,13:152,199:1,1:0,0
16	46472385	.	C	A	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=CC->AC;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	104:2:0:0:1,2:101,120:0,0:0,0	275:8:0:0:10,11:256,302:0,0:1,2
16	46481595	.	A	T	.	PASS	NT=ref;QSS=35;QSS_NT=35;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	78:5:0:0:71,117:2,2:0,0:0,1	246:21:0:0:217,333:0,0:0,0:8,21
16	46489776	.	A	G	.	PASS	NT=ref;QSS=23;QSS_NT=23;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	46:0:0:0:46,47:0,0:0,0:0,0	127:1:0:0:119,123:0,0:6,7:1,1
16	46489777	rs77298755	G	T	.	PASS	NT=ref;QSS=23;QSS_NT=23;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=46489777;dbSNPBuildID=131;SSR=0;SAO=0;VP=050000000001040102000100;WGT=1;VC=SNV;VLD;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	46:0:0:0:0,0:0,0:46,47:0,0	124:1:0:0:0,0:0,0:117,120:6,8
16	46490684	.	A	G	.	PASS	NT=ref;QSS=34;QSS_NT=34;SGT=AA->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	91:2:0:0:89,102:0,0:0,3:0,0	290:16:0:0:255,337:0,0:19,26:0,0
16	46490851	.	A	G	.	PASS	NT=ref;QSS=25;QSS_NT=25;SGT=AA->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	115:1:0:0:113,135:0,0:1,3:0,0	338:1:0:0:310,382:0,0:27,38:0,0
16	46490867	.	C	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->AC;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	108:0:0:0:2,4:106,124:0,0:0,0	289:1:0:0:25,36:263,332:0,0:0,0
16	46490868	.	A	T	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=AA->AT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	107:1:0:0:104,123:0,0:0,0:2,4	288:1:0:0:262,330:0,0:0,1:25,35
16	46493128	.	T	G	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	91:1:0:0:0,0:0,0:1,2:89,110	277:3:0:0:0,0:1,3:15,20:258,311
16	46493444	.	C	T	.	PASS	NT=ref;QSS=37;QSS_NT=37;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	77:0:0:0:0,0:77,97:0,0:0,0	193:3:0:0:0,0:177,214:0,1:13,15
16	46494622	.	A	T	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	107:7:0:0:99,125:0,0:0,0:1,3	337:15:0:0:308,398:0,0:0,0:14,19
16	46494630	.	A	C	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=AA->AC;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	102:3:0:0:97,119:1,3:0,0:1,1	323:2:0:0:309,378:12,16:0,0:0,0
16	46999871	.	A	C	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||133|DNAJA2|protein_coding|CODING|ENST00000566791|3|1),INTRON(MODIFIER||||412|DNAJA2|protein_coding|CODING|ENST00000317089|5|1),INTRON(MODIFIER|||||DNAJA2|nonsense_mediated_decay|CODING|ENST00000563158|5|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	45:0:0:0:45,46:0,0:0,0:0,0	97:1:0:0:90,90:6,6:0,1:0,0
16	48009048	.	C	T	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||RP11-523L20.1|lincRNA|NON_CODING|ENST00000562980||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:0:0:0:0,0:39,39:0,0:0,0	84:5:0:0:0,0:69,74:0,0:10,13
16	48537266	.	G	T	.	PASS	NT=ref;QSS=26;QSS_NT=26;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||MOCS1P1|processed_pseudogene|NON_CODING|ENST00000564020||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	50:0:0:0:0,0:0,0:50,50:0,0	89:1:0:0:0,0:0,0:77,79:11,11
16	50789102	.	G	A	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||165|CYLD|protein_coding|CODING|ENST00000569681||1),DOWNSTREAM(MODIFIER||||303|CYLD|protein_coding|CODING|ENST00000566679||1),INTRON(MODIFIER||||771|CYLD|protein_coding|CODING|ENST00000568704|3|1),INTRON(MODIFIER||||910|CYLD|protein_coding|CODING|ENST00000566206|5|1),INTRON(MODIFIER||||953|CYLD|protein_coding|CODING|ENST00000398568|5|1),INTRON(MODIFIER||||953|CYLD|protein_coding|CODING|ENST00000564326|4|1),INTRON(MODIFIER||||953|CYLD|protein_coding|CODING|ENST00000569418|5|1),INTRON(MODIFIER||||956|CYLD|protein_coding|CODING|ENST00000311559|6|1),INTRON(MODIFIER||||956|CYLD|protein_coding|CODING|ENST00000427738|4|1),INTRON(MODIFIER||||956|CYLD|protein_coding|CODING|ENST00000540145|6|1),INTRON(MODIFIER|||||CYLD|retained_intron|CODING|ENST00000563629|3|1),INTRON(MODIFIER|||||CYLD|retained_intron|CODING|ENST00000569891|6|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	25:0:0:0:0,0:0,0:25,26:0,0	72:2:1:0:12,13:0,0:58,62:0,0
16	51630981	.	G	A	.	PASS	NT=ref;QSS=23;QSS_NT=23;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	45:0:0:0:0,0:0,0:45,45:0,0	89:0:0:0:6,6:0,0:83,83:0,0
16	53732716	.	G	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER||||121|RPGRIP1L|protein_coding|CODING|ENST00000562588|2|1),INTRON(MODIFIER||||1235|RPGRIP1L|protein_coding|CODING|ENST00000262135|2|1),INTRON(MODIFIER||||1253|RPGRIP1L|protein_coding|CODING|ENST00000564374|2|1),INTRON(MODIFIER||||125|RPGRIP1L|protein_coding|CODING|ENST00000568653|2|1),INTRON(MODIFIER||||1281|RPGRIP1L|protein_coding|CODING|ENST00000563746|2|1),INTRON(MODIFIER||||1315|RPGRIP1L|protein_coding|CODING|ENST00000379925|2|1),INTRON(MODIFIER||||353|RPGRIP1L|protein_coding|CODING|ENST00000562230|2|1),INTRON(MODIFIER||||55|RPGRIP1L|protein_coding|CODING|ENST00000569716|3|1),INTRON(MODIFIER||||78|RPGRIP1L|protein_coding|CODING|ENST00000566096|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:0:0:0:0,0:0,1:38,39:1,1	99:4:0:0:9,9:0,0:86,97:0,1
16	54156126	rs62032761	G	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||505|FTO|protein_coding|CODING|ENST00000471389||1),INTERGENIC(MODIFIER||||||||||1);RSPOS=54156126;dbSNPBuildID=129;SSR=0;SAO=0;VP=050000000001000002000100;WGT=1;VC=SNV;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:0:0:0:0,0:0,0:33,33:0,0	72:1:0:0:0,0:5,5:66,69:0,0
16	56059428	.	T	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	54:3:0:0:0,0:0,2:0,0:51,52	104:5:0:0:0,0:9,11:0,0:90,93
16	56261797	.	G	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||109|GNAO1|protein_coding|CODING|ENST00000562316|1|1),INTRON(MODIFIER||||127|GNAO1|protein_coding|CODING|ENST00000565363|1|1),INTRON(MODIFIER||||354|GNAO1|protein_coding|CODING|ENST00000262493|2|1),INTRON(MODIFIER||||354|GNAO1|protein_coding|CODING|ENST00000262494|2|1),INTRON(MODIFIER||||82|GNAO1|protein_coding|CODING|ENST00000563440|1|1),INTRON(MODIFIER|||||GNAO1|retained_intron|CODING|ENST00000563661|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:0:0:0:0,0:0,0:35,35:0,0	88:2:0:0:0,0:0,0:78,80:8,8
16	56600653	rs59877652	A	G	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||62|MT4|protein_coding|CODING|ENST00000219162|1|1);RSPOS=56600653;GMAF=0.2857;dbSNPBuildID=129;SSR=0;SAO=0;VP=050000000005000016000100;WGT=1;VC=SNV;ASP;KGPhase1;KGPROD;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	18:1:0:0:17,21:0,0:0,0:0,0	35:2:1:0:24,37:0,0:9,12:0,0
16	56600657	rs13336446	A	G	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||62|MT4|protein_coding|CODING|ENST00000219162|1|1);RSPOS=56600657;GMAF=0.3777;dbSNPBuildID=121;SSR=0;SAO=0;VP=050000000005000016000100;WGT=1;VC=SNV;ASP;KGPhase1;KGPROD;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	17:1:0:0:16,20:0,0:0,0:0,0	35:3:1:0:23,38:0,0:9,11:0,0
16	58688042	.	A	G	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	45:0:0:0:45,45:0,0:0,0:0,0	87:6:0:0:75,79:0,0:6,10:0,0
16	59608751	.	T	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:2:0:0:0,0:0,0:0,0:32,34	111:0:0:0:6,6:0,0:1,1:104,104
16	60012010	.	C	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-430C1.1|processed_transcript|NON_CODING|ENST00000568279|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	18:0:0:0:0,0:18,26:0,0:0,0	28:0:0:0:0,0:22,26:0,0:6,7
16	60367702	.	G	A	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:0:0:0:0,0:1,1:37,37:0,0	96:1:0:0:9,9:1,1:85,86:0,1
16	60725729	.	A	G	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:0:0:0:33,33:0,0:0,0:0,0	82:0:0:0:76,82:0,0:6,6:0,0
16	60789063	.	A	G	.	PASS	NT=ref;QSS=25;QSS_NT=25;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	50:0:0:0:50,50:0,0:0,0:0,0	116:2:0:0:104,105:0,0:10,11:0,0
16	61177190	.	G	A	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:0:0:0:0,0:0,0:40,40:0,0	91:0:0:0:7,7:0,0:84,84:0,0
16	62458147	.	G	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:0:0:0:0,0:0,0:31,31:0,0	95:0:0:0:6,6:0,0:88,88:1,1
16	62548274	.	C	A	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:0:0:0:0,0:36,36:0,0:0,0	108:6:0:0:12,12:90,95:0,1:0,0
16	62737353	.	T	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:1:0:0:0,0:0,0:0,0:30,31	101:2:0:0:4,5:0,0:0,0:95,96
16	62920390	.	T	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:0:0:0:0,0:0,0:0,0:33,33	120:1:0:0:0,0:9,9:0,0:110,111
16	63296563	.	T	C	.	PASS	NT=ref;QSS=23;QSS_NT=23;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	46:1:0:0:0,0:0,0:0,0:45,46	117:0:0:0:0,0:9,9:0,0:108,108
16	65291101	.	T	C	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-256I9.3|lincRNA|NON_CODING|ENST00000562656|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:0:0:0:0,0:0,0:0,0:37,37	89:0:0:0:0,0:8,8:0,0:81,81
16	65732409	.	A	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:2:0:0:31,33:0,0:0,0:0,0	97:5:0:0:84,87:0,1:8,9:0,0
16	66794230	rs8059983	C	T	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||508|CCDC79|protein_coding|CODING|ENST00000415744|14|1),INTRON(MODIFIER||||550|CCDC79|protein_coding|CODING|ENST00000433574|15|1),INTRON(MODIFIER||||680|CCDC79|protein_coding|CODING|ENST00000432602|14|1),INTRON(MODIFIER||||727|CCDC79|protein_coding|CODING|ENST00000433154|16|1),INTRON(MODIFIER||||727|CCDC79|protein_coding|CODING|ENST00000558713|15|1),INTRON(MODIFIER|||||CCDC79|nonsense_mediated_decay|CODING|ENST00000313294|14|1),UPSTREAM(MODIFIER||||24|CCDC79|protein_coding|CODING|ENST00000559403||1);RSPOS=66794230;dbSNPBuildID=116;SSR=0;SAO=0;VP=050000080005000002000100;GENEINFO=CCDC79:283847;WGT=1;VC=SNV;INT;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:1:0:0:0,0:35,41:0,0:0,0	66:3:0:0:0,0:55,67:1,1:7,10
16	68697331	.	G	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||774|CDH3|protein_coding|CODING|ENST00000581171|1|1),INTRON(MODIFIER||||784|CDH3|protein_coding|CODING|ENST00000429102|2|1),INTRON(MODIFIER||||829|CDH3|protein_coding|CODING|ENST00000264012|2|1),INTRON(MODIFIER|||||CDH3|nonsense_mediated_decay|CODING|ENST00000542274|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:0:0:0:0,0:0,0:40,40:0,0	99:2:0:0:1,1:0,0:91,92:5,6
16	69135748	.	C	T	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER||||263|HAS3|protein_coding|CODING|ENST00000566118||1),UPSTREAM(MODIFIER||||281|HAS3|protein_coding|CODING|ENST00000219322||1),UPSTREAM(MODIFIER||||553|HAS3|protein_coding|CODING|ENST00000569188||1),UPSTREAM(MODIFIER|||||HAS3|processed_transcript|CODING|ENST00000568321||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	48:1:0:0:0,0:47,49:0,0:0,0	92:4:0:0:0,1:82,84:0,1:6,6
16	69135750	.	C	T	.	PASS	NT=ref;QSS=25;QSS_NT=25;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER||||263|HAS3|protein_coding|CODING|ENST00000566118||1),UPSTREAM(MODIFIER||||281|HAS3|protein_coding|CODING|ENST00000219322||1),UPSTREAM(MODIFIER||||553|HAS3|protein_coding|CODING|ENST00000569188||1),UPSTREAM(MODIFIER|||||HAS3|processed_transcript|CODING|ENST00000568321||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	50:1:0:0:0,0:49,51:0,0:0,0	94:4:0:0:0,0:83,87:1,1:6,6
16	70085765	.	G	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||249|RP11-419C5.2|protein_coding|CODING|ENST00000325845|1|1),INTRON(MODIFIER|||||PDXDC2P|processed_transcript|NON_CODING|ENST00000529089|1|1),INTRON(MODIFIER|||||PDXDC2P|processed_transcript|NON_CODING|ENST00000530079|1|1),INTRON(MODIFIER|||||PDXDC2P|processed_transcript|NON_CODING|ENST00000531894|1|1),INTRON(MODIFIER|||||RP11-106J23.2|processed_transcript|NON_CODING|ENST00000527016|1|1),INTRON(MODIFIER|||||RP11-106J23.2|processed_transcript|NON_CODING|ENST00000533264|1|1),INTRON(MODIFIER|||||RP11-106J23.2|processed_transcript|NON_CODING|ENST00000534580|2|1),INTRON(MODIFIER|||||RP11-106J23.2|transcribed_unprocessed_pseudogene|NON_CODING|ENST00000534700|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:2:0:0:0,2:0,1:33,59:0,2	101:2:0:0:1,2:7,11:91,153:0,1
16	70322291	.	C	G	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||968|AARS|protein_coding|CODING|ENST00000261772|1|1),UPSTREAM(MODIFIER||||232|DDX19B|protein_coding|CODING|ENST00000566216||1),UPSTREAM(MODIFIER||||370|DDX19B|protein_coding|CODING|ENST00000563392||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:0:0:0:0,0:31,33:0,0:0,0	92:3:0:0:0,0:83,90:6,6:0,0
16	70322298	.	C	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER||||968|AARS|protein_coding|CODING|ENST00000261772|1|1),UPSTREAM(MODIFIER||||232|DDX19B|protein_coding|CODING|ENST00000566216||1),UPSTREAM(MODIFIER||||370|DDX19B|protein_coding|CODING|ENST00000563392||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:0:0:0:0,0:35,37:0,0:0,0	88:4:0:0:0,0:79,87:0,0:5,5
16	70931080	.	A	T	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||5120|HYDIN|protein_coding|CODING|ENST00000316490|53|1),INTRON(MODIFIER||||5121|HYDIN|protein_coding|CODING|ENST00000393567|53|1),INTRON(MODIFIER|||||HYDIN|retained_intron|CODING|ENST00000309900|18|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:0:0:0:37,39:0,0:0,0:0,0	78:0:0:0:72,73:0,0:0,0:6,6
16	70965065	rs199513455	A	T	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||5120|HYDIN|protein_coding|CODING|ENST00000316490|45|1),INTRON(MODIFIER||||5121|HYDIN|protein_coding|CODING|ENST00000393567|45|1),INTRON(MODIFIER|||||HYDIN|retained_intron|CODING|ENST00000309900|11|1);RSPOS=70965065;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000080005000002000100;WGT=1;VC=SNV;INT;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:1:0:0:29,33:0,0:0,0:0,0	85:1:0:0:71,78:0,0:0,0:13,15
16	71770527	.	T	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||AP1G1|nonsense_mediated_decay|CODING|ENST00000565009||1),INTRON(MODIFIER||||247|AP1G1|protein_coding|CODING|ENST00000564155|5|1),INTRON(MODIFIER||||822|AP1G1|protein_coding|CODING|ENST00000299980|21|1),INTRON(MODIFIER||||822|AP1G1|protein_coding|CODING|ENST00000569748|24|1),INTRON(MODIFIER||||825|AP1G1|protein_coding|CODING|ENST00000393512|22|1),INTRON(MODIFIER||||825|AP1G1|protein_coding|CODING|ENST00000423132|22|1),INTRON(MODIFIER||||845|AP1G1|protein_coding|CODING|ENST00000433195|24|1),UPSTREAM(MODIFIER|||||AP1G1|retained_intron|CODING|ENST00000570052||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:2:0:0:0,0:0,0:0,0:30,32	115:6:0:0:0,0:9,10:1,1:99,105
16	75385986	.	C	T	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||299|CFDP1|protein_coding|CODING|ENST00000283882|5|1),INTRON(MODIFIER|||||CFDP1|processed_transcript|CODING|ENST00000564793|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:1:0:0:0,0:37,40:0,0:0,0	77:4:0:0:0,0:67,71:0,0:6,6
16	76988307	.	G	T	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:0:0:0:0,0:0,0:35,37:0,0	95:4:0:0:0,0:0,0:81,87:10,16
16	77368714	.	T	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1221|ADAMTS18|protein_coding|CODING|ENST00000282849|12|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:0:0:0:0,0:0,0:0,0:29,29	98:3:0:0:7,9:0,0:1,1:87,88
16	77707879	.	T	C	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:0:0:0:0,0:0,0:0,0:37,40	107:0:0:0:0,0:7,7:0,0:100,103
16	77707890	.	G	A	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:0:0:0:0,0:0,0:34,37:0,0	102:1:0:0:9,9:0,0:92,95:0,0
16	77739876	.	G	A	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||AC092724.1|miRNA|NON_CODING|ENST00000408299||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:0:0:0:0,0:0,0:38,38:0,0	94:1:0:0:5,5:0,1:88,88:0,0
16	77825333	.	T	C	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||419|VAT1L|protein_coding|CODING|ENST00000302536|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:0:0:0:0,0:0,0:0,0:38,38	91:1:0:0:0,0:7,8:0,0:83,83
16	77940839	.	T	C	.	PASS	NT=ref;QSS=26;QSS_NT=26;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||419|VAT1L|protein_coding|CODING|ENST00000302536|7|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	51:0:0:0:0,0:0,0:0,0:51,51	122:1:0:0:0,0:6,6:0,0:115,116
16	79187651	.	G	T	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||213|WWOX|protein_coding|CODING|ENST00000539474|5|1),INTRON(MODIFIER||||234|WWOX|protein_coding|CODING|ENST00000406884|5|1),INTRON(MODIFIER||||311|WWOX|protein_coding|CODING|ENST00000402655|4|1),INTRON(MODIFIER||||414|WWOX|protein_coding|CODING|ENST00000566780|8|1),INTRON(MODIFIER|||||WWOX|nonsense_mediated_decay|CODING|ENST00000569332|7|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:0:0:0:0,0:0,0:39,39:0,0	115:2:0:0:0,0:0,0:104,106:9,9
16	80745157	.	G	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||506|CDYL2|protein_coding|CODING|ENST00000299564|1|1),INTRON(MODIFIER||||507|CDYL2|protein_coding|CODING|ENST00000562812|1|1),INTRON(MODIFIER||||507|CDYL2|protein_coding|CODING|ENST00000563890|1|1),INTRON(MODIFIER||||507|CDYL2|protein_coding|CODING|ENST00000566173|1|1),INTRON(MODIFIER|||||CDYL2|processed_transcript|CODING|ENST00000562753|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:1:0:0:0,0:0,0:33,34:0,0	103:1:0:0:7,8:0,0:95,95:0,0
16	80881265	.	C	T	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-314O13.1|lincRNA|NON_CODING|ENST00000561519|1|1),INTRON(MODIFIER|||||RP11-314O13.1|lincRNA|NON_CODING|ENST00000562231|1|1),INTRON(MODIFIER|||||RP11-314O13.1|lincRNA|NON_CODING|ENST00000563626|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	42:1:0:0:0,0:41,42:0,0:0,0	99:1:0:0:0,0:92,92:0,0:6,7
16	80961070	.	T	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	53:2:0:0:0,0:1,1:1,1:49,53	104:0:0:0:0,0:8,8:0,0:96,96
16	81724802	.	C	G	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||620|CMIP|protein_coding|CODING|ENST00000398040|8|1),INTRON(MODIFIER||||679|CMIP|protein_coding|CODING|ENST00000539778|10|1),INTRON(MODIFIER||||773|CMIP|protein_coding|CODING|ENST00000537098|10|1),INTRON(MODIFIER|||||CMIP|processed_transcript|CODING|ENST00000566513|9|1),UPSTREAM(MODIFIER|||||CMIP|TEC|CODING|ENST00000568590||1),UPSTREAM(MODIFIER|||||CMIP|retained_intron|CODING|ENST00000565680||1),UPSTREAM(MODIFIER|||||CMIP|retained_intron|CODING|ENST00000569146||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:0:0:0:0,0:37,37:0,0:0,0	98:1:0:0:0,0:88,89:9,9:0,0
16	82146969	.	C	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->CG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=DOWNSTREAM(MODIFIER|||||AC138304.1|miRNA|NON_CODING|ENST00000577313||1),INTRON(MODIFIER|||||RP11-510J16.5|antisense|NON_CODING|ENST00000567021|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:0:0:0:0,0:36,39:0,0:0,0	83:3:0:0:0,0:76,83:4,4:0,0
16	82149852	rs201295881	T	C	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||CTD-2588J6.1|processed_pseudogene|NON_CODING|ENST00000566728||1),INTRON(MODIFIER|||||RP11-510J16.5|antisense|NON_CODING|ENST00000567021|1|1);RSPOS=82149852;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:1:0:0:0,0:0,0:0,0:35,36	98:0:0:0:1,1:6,6:0,0:91,97
16	82772637	.	T	C	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||175|CDH13|protein_coding|CODING|ENST00000446376|1|1),INTRON(MODIFIER||||175|CDH13|protein_coding|CODING|ENST00000565636|1|1),INTRON(MODIFIER||||190|CDH13|protein_coding|CODING|ENST00000431540|1|1),INTRON(MODIFIER||||674|CDH13|protein_coding|CODING|ENST00000428848|1|1),INTRON(MODIFIER||||67|CDH13|protein_coding|CODING|ENST00000567445|1|1),INTRON(MODIFIER||||713|CDH13|protein_coding|CODING|ENST00000566620|1|1),INTRON(MODIFIER||||760|CDH13|protein_coding|CODING|ENST00000268613|2|1),INTRON(MODIFIER|||||CDH13|nonsense_mediated_decay|CODING|ENST00000539548|1|1),INTRON(MODIFIER|||||CDH13|nonsense_mediated_decay|CODING|ENST00000562601|2|1),INTRON(MODIFIER|||||CDH13|nonsense_mediated_decay|CODING|ENST00000568770|2|1),INTRON(MODIFIER|||||CDH13|nonsense_mediated_decay|CODING|ENST00000569144|1|1),INTRON(MODIFIER|||||CDH13|retained_intron|CODING|ENST00000566333|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:0:0:0:0,0:0,0:0,0:38,38	90:0:0:0:0,0:6,6:0,0:84,84
16	83601498	.	C	G	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||674|CDH13|protein_coding|CODING|ENST00000428848|6|1),INTRON(MODIFIER||||713|CDH13|protein_coding|CODING|ENST00000566620|7|1),INTRON(MODIFIER||||760|CDH13|protein_coding|CODING|ENST00000268613|8|1),INTRON(MODIFIER|||||CDH13|nonsense_mediated_decay|CODING|ENST00000539548|6|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:1:0:0:0,0:37,38:0,0:0,0	102:1:0:0:0,0:92,93:9,9:0,0
16	86370427	.	T	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||119|AC092327.1|protein_coding|CODING|ENST00000304488|4|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:3:0:0:0,0:0,0:1,1:35,45	61:7:0:0:0,0:6,9:0,3:48,60
16	86453035	.	G	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	47:13:3:0:0,6:0,0:34,114:0,0	159:61:3:0:7,31:0,0:91,311:0,4
16	86498063	.	A	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=AA->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	61:9:0:0:51,89:0,1:1,5:0,0	204:25:0:0:164,299:1,1:14,28:0,0
16	86537941	.	G	C	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	44:0:0:0:0,0:0,0:44,44:0,0	99:1:0:0:0,0:7,7:91,92:0,0
16	86719946	.	T	G	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:1:0:0:0,0:0,0:0,0:34,36	84:2:0:0:0,0:0,0:6,6:76,79
16	86879050	rs76845477	G	T	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=86879050;dbSNPBuildID=131;SSR=0;SAO=0;VP=050000000005000102000100;WGT=1;VC=SNV;ASP;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	58:3:0:0:0,0:1,1:54,60:0,1	109:7:1:0:0,0:1,1:94,105:7,13
16	87058662	rs185613211	C	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=87058662;GMAF=0.0005;dbSNPBuildID=135;SSR=0;SAO=0;VP=050000000005000014000100;WGT=1;VC=SNV;ASP;KGPhase1;KGPROD	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:0:0:0:0,0:31,31:0,0:0,0	124:2:0:0:0,1:113,115:0,0:9,9
16	87785621	.	G	A	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||KLHDC4|nonsense_mediated_decay|CODING|ENST00000568338||1),INTRON(MODIFIER||||172|KLHDC4|protein_coding|CODING|ENST00000561825|5|1),INTRON(MODIFIER||||333|KLHDC4|protein_coding|CODING|ENST00000562261|1|1),INTRON(MODIFIER||||463|KLHDC4|protein_coding|CODING|ENST00000353170|2|1),INTRON(MODIFIER||||489|KLHDC4|protein_coding|CODING|ENST00000347925|4|1),INTRON(MODIFIER||||520|KLHDC4|protein_coding|CODING|ENST00000270583|4|1),INTRON(MODIFIER|||||KLHDC4|nonsense_mediated_decay|CODING|ENST00000562155|3|1),INTRON(MODIFIER|||||KLHDC4|nonsense_mediated_decay|CODING|ENST00000564396|4|1),INTRON(MODIFIER|||||KLHDC4|nonsense_mediated_decay|CODING|ENST00000567298|4|1),INTRON(MODIFIER|||||KLHDC4|nonsense_mediated_decay|CODING|ENST00000569747|4|1),INTRON(MODIFIER|||||KLHDC4|processed_transcript|CODING|ENST00000564484|3|1),INTRON(MODIFIER|||||KLHDC4|processed_transcript|CODING|ENST00000565328|2|1),INTRON(MODIFIER|||||KLHDC4|processed_transcript|CODING|ENST00000568502|3|1),INTRON(MODIFIER|||||KLHDC4|retained_intron|CODING|ENST00000566661|2|1),UPSTREAM(MODIFIER|||||KLHDC4|processed_transcript|CODING|ENST00000316853||1),UPSTREAM(MODIFIER|||||RP11-278A23.2|sense_intronic|NON_CODING|ENST00000563036||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:0:0:0:0,0:0,0:34,34:0,0	64:3:0:0:7,9:0,0:54,56:0,0
16	88313310	rs200983684	T	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||LA16c-444G7.1|processed_transcript|NON_CODING|ENST00000563190|2|1);RSPOS=88313310;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:2:0:0:0,0:0,1:0,1:34,39	96:8:0:0:0,0:0,3:6,9:82,93
16	88317413	.	G	A	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||LA16c-444G7.1|processed_transcript|NON_CODING|ENST00000563190|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	44:1:0:0:0,0:0,0:43,46:0,0	107:1:0:0:5,5:0,0:101,105:0,0
16	88625151	.	A	G	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||147|C16orf85|protein_coding|CODING|ENST00000378416|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	48:5:0:0:40,42:1,3:2,3:0,0	105:10:0:0:76,80:2,2:17,24:0,0
16	89075704	.	G	T	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	57:3:0:0:0,0:0,0:54,61:0,0	124:4:0:0:0,0:0,0:110,127:10,14
16	89096410	.	C	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->AC;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:1:0:0:0,1:35,36:1,1:0,0	102:5:0:0:10,15:87,94:0,0:0,1
16	89142250	.	G	C	.	PASS	NT=ref;QSS=30;QSS_NT=30;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	66:4:0:0:0,0:0,0:62,67:0,0	136:9:0:0:0,0:7,8:120,130:0,0
16	89145439	.	G	T	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	44:0:0:0:0,0:0,0:44,44:0,0	97:1:0:0:0,0:0,0:87,89:9,9
16	89900653	.	A	C	.	PASS	NT=ref;QSS=26;QSS_NT=26;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||666|SPIRE2|protein_coding|CODING|ENST00000393062|1|1),INTRON(MODIFIER||||714|SPIRE2|protein_coding|CODING|ENST00000378247|1|1),INTRON(MODIFIER||||99|SPIRE2|protein_coding|CODING|ENST00000563972|1|1),INTRON(MODIFIER|||||SPIRE2|nonsense_mediated_decay|CODING|ENST00000566337|1|1),INTRON(MODIFIER|||||SPIRE2|processed_transcript|CODING|ENST00000564878|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	55:2:0:0:52,55:0,0:1,1:0,0	106:2:0:0:89,96:13,15:1,1:1,1
16	89945565	rs12929242	T	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=DOWNSTREAM(MODIFIER|||||TCF25|processed_transcript|CODING|ENST00000563032||1),INTRON(MODIFIER||||209|TCF25|protein_coding|CODING|ENST00000565196|1|1),INTRON(MODIFIER||||232|TCF25|protein_coding|CODING|ENST00000561958|1|1),INTRON(MODIFIER||||264|TCF25|protein_coding|CODING|ENST00000568412|1|1),INTRON(MODIFIER||||676|TCF25|protein_coding|CODING|ENST00000263346|1|1),INTRON(MODIFIER|||||TCF25|nonsense_mediated_decay|CODING|ENST00000564652|2|1),INTRON(MODIFIER|||||TCF25|processed_transcript|CODING|ENST00000563406|2|1),INTRON(MODIFIER|||||TCF25|retained_intron|CODING|ENST00000561585|1|1);RSPOS=89945565;dbSNPBuildID=121;SSR=0;SAO=0;VP=050000080001000002000100;GENEINFO=TCF25:22980;WGT=1;VC=SNV;INT;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	57:3:0:0:0,0:2,3:0,0:52,54	95:8:0:0:1,1:7,11:0,2:79,85
16	90061559	.	C	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=EXON(MODIFIER|||||AFG3L1P|processed_transcript|NON_CODING|ENST00000418696|9|1),EXON(MODIFIER|||||AFG3L1P|processed_transcript|NON_CODING|ENST00000436447|10|1),EXON(MODIFIER|||||AFG3L1P|processed_transcript|NON_CODING|ENST00000437774|11|1),EXON(MODIFIER|||||AFG3L1P|processed_transcript|NON_CODING|ENST00000457926|10|1),EXON(MODIFIER|||||AFG3L1P|processed_transcript|NON_CODING|ENST00000458301|5|1),EXON(MODIFIER|||||AFG3L1P|retained_intron|NON_CODING|ENST00000427658|4|1),INTRON(MODIFIER|||||AFG3L1P|processed_transcript|NON_CODING|ENST00000388970|9|1),INTRON(MODIFIER|||||AFG3L1P|retained_intron|NON_CODING|ENST00000355531|4|1),INTRON(MODIFIER|||||AFG3L1P|unitary_pseudogene|NON_CODING|ENST00000557444|12|1),UPSTREAM(MODIFIER|||||AFG3L1P|retained_intron|NON_CODING|ENST00000454997||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:0:0:0:0,0:34,39:0,0:0,0	96:3:0:0:0,0:87,96:0,0:6,6
16	90166385	rs183172376	C	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=DOWNSTREAM(MODIFIER|||||RP11-356C4.2|polymorphic_pseudogene|NON_CODING|ENST00000567960||1),DOWNSTREAM(MODIFIER|||||RP11-356C4.2|processed_transcript|NON_CODING|ENST00000563927||1),DOWNSTREAM(MODIFIER|||||RP11-356C4.2|processed_transcript|NON_CODING|ENST00000564451||1),DOWNSTREAM(MODIFIER|||||RP11-356C4.2|processed_transcript|NON_CODING|ENST00000567207||1),INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||FAM157C|processed_transcript|NON_CODING|ENST00000563357||1),UPSTREAM(MODIFIER|||||FAM157C|processed_transcript|NON_CODING|ENST00000565757||1),UPSTREAM(MODIFIER|||||FAM157C|transcribed_unprocessed_pseudogene|NON_CODING|ENST00000566944||1);RSPOS=90166385;dbSNPBuildID=135;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:0:0:0:0,0:39,40:0,0:0,1	123:0:0:0:0,0:117,119:0,0:6,10
16	90268251	.	G	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||AC137934.1|processed_transcript|NON_CODING|ENST00000568418|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:0:0:0:0,0:0,1:32,37:0,0	93:0:0:0:0,0:8,11:85,91:0,0
17	630731	rs112700203	T	C	.	PASS	NT=ref;QSS=25;QSS_NT=25;SGT=TT->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER||||257|FAM57A|protein_coding|CODING|ENST00000308278||1),UPSTREAM(MODIFIER|||||FAM57A|nonsense_mediated_decay|CODING|ENST00000574327||1);RSPOS=630731;dbSNPBuildID=132;SSR=0;SAO=0;VP=050000000001040102000100;WGT=1;VC=SNV;VLD;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	55:1:0:0:0,0:0,1:0,0:54,62	107:3:0:0:0,0:7,7:0,0:97,109
17	928398	.	T	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||153|ABR|protein_coding|CODING|ENST00000572441|1|1),INTRON(MODIFIER||||310|ABR|protein_coding|CODING|ENST00000543210|1|1),INTRON(MODIFIER||||641|ABR|protein_coding|CODING|ENST00000536794|11|1),INTRON(MODIFIER||||813|ABR|protein_coding|CODING|ENST00000544583|16|1),INTRON(MODIFIER||||813|ABR|protein_coding|CODING|ENST00000574437|15|1),INTRON(MODIFIER||||822|ABR|protein_coding|CODING|ENST00000291107|15|1),INTRON(MODIFIER||||859|ABR|protein_coding|CODING|ENST00000302538|16|1),INTRON(MODIFIER|||||ABR|processed_transcript|CODING|ENST00000571022|1|1),INTRON(MODIFIER|||||ABR|processed_transcript|CODING|ENST00000577052|1|1),INTRON(MODIFIER|||||ABR|retained_intron|CODING|ENST00000574257|1|1),INTRON(MODIFIER|||||ABR|retained_intron|CODING|ENST00000576668|1|1),UPSTREAM(MODIFIER|||||MIR3183|miRNA|NON_CODING|ENST00000578566||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:1:0:0:0,0:0,0:0,1:32,35	82:7:0:0:5,6:0,1:5,7:65,69
17	965902	.	T	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||164|ABR|protein_coding|CODING|ENST00000571945||1),INTRON(MODIFIER||||641|ABR|protein_coding|CODING|ENST00000536794|5|1),INTRON(MODIFIER||||813|ABR|protein_coding|CODING|ENST00000544583|10|1),INTRON(MODIFIER||||813|ABR|protein_coding|CODING|ENST00000574437|9|1),INTRON(MODIFIER||||822|ABR|protein_coding|CODING|ENST00000291107|9|1),INTRON(MODIFIER||||859|ABR|protein_coding|CODING|ENST00000302538|10|1),INTRON(MODIFIER|||||ABR|processed_transcript|CODING|ENST00000576964|6|1),UPSTREAM(MODIFIER|||||ABR|ambiguous_orf|CODING|ENST00000573895||1),UPSTREAM(MODIFIER|||||ABR|processed_transcript|CODING|ENST00000575770||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	74:6:0:0:0,0:0,2:0,0:68,92	165:5:0:0:0,0:9,18:0,0:151,210
17	1096068	.	C	T	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||128|ABR|protein_coding|CODING|ENST00000574139|1|1),INTRON(MODIFIER||||132|ABR|protein_coding|CODING|ENST00000575934|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:0:0:0:0,0:37,37:0,0:0,0	97:1:0:0:0,1:85,85:0,0:11,11
17	1150415	.	T	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||AC144836.1|lincRNA|NON_CODING|ENST00000575911|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	55:2:0:0:1,1:1,1:0,1:51,55	104:5:0:0:0,1:10,11:1,1:88,93
17	1231886	.	T	G	.	PASS	NT=ref;QSS=28;QSS_NT=28;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	56:1:0:0:1,1:1,1:0,0:53,64	132:12:0:0:0,3:0,6:17,22:103,125
17	1898163	.	G	A	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||441|RTN4RL1|protein_coding|CODING|ENST00000331238|1|1),UPSTREAM(MODIFIER|||||CTD-2545H1.2|lincRNA|NON_CODING|ENST00000574520||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:1:0:0:0,0:0,0:35,36:0,0	116:2:0:0:11,11:0,0:103,105:0,0
17	2331328	.	T	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||344|METTL16|protein_coding|CODING|ENST00000538844|6|1),INTRON(MODIFIER||||562|METTL16|protein_coding|CODING|ENST00000263092|8|1),INTRON(MODIFIER|||||METTL16|nonsense_mediated_decay|CODING|ENST00000574752|8|1),INTRON(MODIFIER|||||METTL16|nonsense_mediated_decay|CODING|ENST00000576155|8|1),INTRON(MODIFIER|||||METTL16|nonsense_mediated_decay|CODING|ENST00000576556|6|1),INTRON(MODIFIER|||||METTL16|processed_transcript|CODING|ENST00000571669|7|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:1:0:0:0,1:0,0:1,1:27,27	88:3:0:0:2,4:1,1:17,18:65,65
17	3992901	rs71366586	T	C	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||2961|ZZEF1|protein_coding|CODING|ENST00000381638|12|1),INTRON(MODIFIER|||||ZZEF1|processed_transcript|CODING|ENST00000574474|12|1);RSPOS=3992901;GMAF=0.1067;dbSNPBuildID=130;SSR=0;SAO=0;VP=050100080001040116000100;GENEINFO=ZZEF1:23140;WGT=1;VC=SNV;SLO;INT;VLD;GNO;KGPhase1;KGPROD;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:0:0:0:0,0:0,0:0,0:38,41	103:3:0:0:0,0:10,10:2,3:88,95
17	4365911	.	T	C	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||385|SPNS3|protein_coding|CODING|ENST00000333476|7|1),INTRON(MODIFIER||||512|SPNS3|protein_coding|CODING|ENST00000355530|8|1),INTRON(MODIFIER|||||SPNS3|nonsense_mediated_decay|CODING|ENST00000575194|7|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	84:11:0:0:0,0:2,6:0,1:71,148	221:36:0:0:0,0:10,27:0,0:175,342
17	8585540	.	G	A	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:0:0:0:0,0:0,0:34,34:0,0	91:3:0:0:7,7:0,0:81,85:0,0
17	10046308	.	C	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||181|GAS7|protein_coding|CODING|ENST00000540214|1|1),INTRON(MODIFIER||||476|GAS7|protein_coding|CODING|ENST00000432992|1|1),UPSTREAM(MODIFIER|||||CTB-104H12.6|antisense|NON_CODING|ENST00000581040||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:2:0:0:0,1:35,36:0,0:0,0	105:3:0:0:0,0:93,96:1,1:8,8
17	13928124	rs199806452	A	G	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||COX10-AS1|lincRNA|NON_CODING|ENST00000449363||1),INTRON(MODIFIER|||||CDRT15P1|lincRNA|NON_CODING|ENST00000268714|1|1),INTRON(MODIFIER|||||CDRT15P1|lincRNA|NON_CODING|ENST00000389360|1|1),INTRON(MODIFIER|||||CDRT15P1|unprocessed_pseudogene|NON_CODING|ENST00000577632|1|1);RSPOS=13928124;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000000205000002000100;WGT=1;VC=SNV;REF;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:0:0:0:34,34:0,0:0,0:0,0	121:2:0:0:111,113:0,0:8,9:0,0
17	15475660	rs2856134	C	T	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=UPSTREAM(MODIFIER|||||SNORA74|snoRNA|NON_CODING|ENST00000516320||1),UTR_3_PRIME(MODIFIER||||953|RP11-385D13.1|protein_coding|CODING|ENST00000455584|17|1);RSPOS=15475660;dbSNPBuildID=100;SSR=0;SAO=0;VP=050100000005040102000100;WGT=1;VC=SNV;SLO;ASP;VLD;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	47:0:0:0:0,0:47,47:0,0:0,0	100:0:0:0:0,0:91,92:1,1:8,11
17	15746829	.	C	T	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||AC015922.5|processed_transcript|NON_CODING|ENST00000584636|1|1),INTRON(MODIFIER|||||AC015922.5|unprocessed_pseudogene|NON_CODING|ENST00000421102|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	43:0:0:0:0,0:43,43:0,0:0,0	94:0:0:0:0,0:87,87:0,0:7,7
17	16066847	.	A	G	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||NCOR1|retained_intron|CODING|ENST00000579974||1),DOWNSTREAM(MODIFIER|||||NCOR1|retained_intron|CODING|ENST00000585296||1),INTRON(MODIFIER||||2337|NCOR1|protein_coding|CODING|ENST00000395851|4|1),INTRON(MODIFIER||||2440|NCOR1|protein_coding|CODING|ENST00000268712|5|1),INTRON(MODIFIER||||536|NCOR1|protein_coding|CODING|ENST00000436828|6|1),INTRON(MODIFIER||||544|NCOR1|protein_coding|CODING|ENST00000411510|5|1),INTRON(MODIFIER||||545|NCOR1|protein_coding|CODING|ENST00000582357|5|1),INTRON(MODIFIER||||914|NCOR1|protein_coding|CODING|ENST00000395848|2|1),INTRON(MODIFIER|||||NCOR1|nonsense_mediated_decay|CODING|ENST00000460276|5|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	84:1:0:0:82,126:0,0:1,3:0,0	238:6:0:0:222,352:0,0:10,21:0,0
17	16067014	.	A	G	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=AA->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=DOWNSTREAM(MODIFIER|||||NCOR1|retained_intron|CODING|ENST00000579974||1),DOWNSTREAM(MODIFIER|||||NCOR1|retained_intron|CODING|ENST00000585296||1),INTRON(MODIFIER||||2337|NCOR1|protein_coding|CODING|ENST00000395851|4|1),INTRON(MODIFIER||||2440|NCOR1|protein_coding|CODING|ENST00000268712|5|1),INTRON(MODIFIER||||536|NCOR1|protein_coding|CODING|ENST00000436828|6|1),INTRON(MODIFIER||||544|NCOR1|protein_coding|CODING|ENST00000411510|5|1),INTRON(MODIFIER||||545|NCOR1|protein_coding|CODING|ENST00000582357|5|1),INTRON(MODIFIER||||914|NCOR1|protein_coding|CODING|ENST00000395848|2|1),INTRON(MODIFIER|||||NCOR1|nonsense_mediated_decay|CODING|ENST00000460276|5|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	52:1:0:0:51,68:0,0:0,3:0,0	145:8:0:0:128,168:0,0:9,11:0,0
17	16069114	.	C	G	.	PASS	NT=ref;QSS=32;QSS_NT=32;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||2337|NCOR1|protein_coding|CODING|ENST00000395851|3|1),INTRON(MODIFIER||||2440|NCOR1|protein_coding|CODING|ENST00000268712|4|1),INTRON(MODIFIER||||536|NCOR1|protein_coding|CODING|ENST00000436828|5|1),INTRON(MODIFIER||||544|NCOR1|protein_coding|CODING|ENST00000411510|4|1),INTRON(MODIFIER||||545|NCOR1|protein_coding|CODING|ENST00000582357|4|1),INTRON(MODIFIER||||914|NCOR1|protein_coding|CODING|ENST00000395848|1|1),INTRON(MODIFIER|||||NCOR1|nonsense_mediated_decay|CODING|ENST00000460276|4|1),INTRON(MODIFIER|||||NCOR1|retained_intron|CODING|ENST00000579974|1|1),INTRON(MODIFIER|||||NCOR1|retained_intron|CODING|ENST00000585296|4|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	67:1:0:0:0,0:66,68:0,0:0,0	129:1:0:0:0,0:121,127:7,9:0,0
17	16071077	.	G	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=DOWNSTREAM(MODIFIER||||124|NCOR1|protein_coding|CODING|ENST00000430577||1),INTRON(MODIFIER||||2337|NCOR1|protein_coding|CODING|ENST00000395851|3|1),INTRON(MODIFIER||||2440|NCOR1|protein_coding|CODING|ENST00000268712|4|1),INTRON(MODIFIER||||536|NCOR1|protein_coding|CODING|ENST00000436828|5|1),INTRON(MODIFIER||||544|NCOR1|protein_coding|CODING|ENST00000411510|4|1),INTRON(MODIFIER||||545|NCOR1|protein_coding|CODING|ENST00000582357|4|1),INTRON(MODIFIER||||914|NCOR1|protein_coding|CODING|ENST00000395848|1|1),INTRON(MODIFIER|||||NCOR1|nonsense_mediated_decay|CODING|ENST00000460276|4|1),INTRON(MODIFIER|||||NCOR1|retained_intron|CODING|ENST00000579974|1|1),INTRON(MODIFIER|||||NCOR1|retained_intron|CODING|ENST00000585296|4|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	45:3:0:0:0,2:0,0:42,47:0,0	108:4:0:0:5,6:0,0:99,111:0,0
17	16570583	.	C	A	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||NEK4P2|processed_pseudogene|NON_CODING|ENST00000580004||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	41:3:0:0:0,0:38,41:0,0:0,0	119:10:0:0:6,7:103,112:0,1:0,0
17	17112992	.	C	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||579|FLCN|protein_coding|CODING|ENST00000285071||1),INTRON(MODIFIER|||||RP11-45M22.4|nonsense_mediated_decay|NON_CODING|ENST00000427497|9|1),UPSTREAM(MODIFIER||||252|PLD6|protein_coding|CODING|ENST00000321560||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	42:2:0:0:0,0:40,42:0,0:0,0	103:1:0:0:0,0:97,98:0,0:5,6
17	20824390	.	G	A	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=EXON(MODIFIER|||||RP11-344E13.3|antisense|NON_CODING|ENST00000443508|1|1),INTRON(MODIFIER|||||RP11-344E13.3|antisense|NON_CODING|ENST00000417232|3|1),INTRON(MODIFIER|||||RP11-344E13.3|antisense|NON_CODING|ENST00000439794|1|1),INTRON(MODIFIER|||||RP11-344E13.3|antisense|NON_CODING|ENST00000577860|3|1),UPSTREAM(MODIFIER|||||RP11-344E13.3|antisense|NON_CODING|ENST00000577841||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:0:0:0:0,0:0,0:40,40:0,0	102:1:0:0:5,5:0,0:96,98:0,0
17	21524056	.	T	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=TT->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	98:1:0:0:0,0:1,2:0,0:96,103	256:2:0:0:0,0:10,14:2,2:242,259
17	21558028	.	T	C	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||AC144838.3|unprocessed_pseudogene|NON_CODING|ENST00000584107||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	41:1:0:0:0,2:0,0:0,0:40,42	127:2:0:0:2,5:9,11:2,2:112,118
17	21886233	.	T	G	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:0:0:0:0,0:0,0:0,0:38,38	83:3:0:0:0,0:0,0:5,10:75,77
17	21886277	rs113887470	C	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=21886277;dbSNPBuildID=132;SSR=0;SAO=0;VP=050100000009000102000100;WGT=1;VC=SNV;SLO;CFL;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	45:0:0:0:0,0:45,45:0,0:0,0	100:2:0:0:0,0:92,97:1,1:5,8
17	21963014	.	A	G	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	43:0:0:0:43,43:0,0:0,0:0,0	104:3:0:0:93,96:1,1:7,7:0,0
17	22210889	.	A	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	74:0:0:0:73,108:0,0:0,0:1,2	142:0:0:0:131,190:0,0:0,1:11,14
17	22255508	.	G	A	.	PASS	NT=ref;QSS=31;QSS_NT=31;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	70:6:0:0:0,0:0,0:64,86:0,0	219:28:0:0:19,25:0,0:172,249:0,1
17	25304559	.	C	A	.	PASS	NT=ref;QSS=29;QSS_NT=29;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||RP11-260A9.1|processed_pseudogene|NON_CODING|ENST00000580677||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	63:1:0:0:0,1:62,74:0,1:0,0	179:8:0:0:7,10:160,209:4,8:0,0
17	25305857	rs201073984	A	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=AA->AC;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||RP11-260A9.1|processed_pseudogene|NON_CODING|ENST00000580677||1);RSPOS=25305857;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	62:1:0:0:61,73:0,1:0,0:0,0	155:3:0:0:146,189:6,8:0,0:0,0
17	25306464	.	T	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||RP11-260A9.1|processed_pseudogene|NON_CODING|ENST00000580677||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:1:0:0:0,0:0,0:0,0:38,43	143:3:0:0:0,0:11,12:0,0:129,146
17	25431460	rs74402849	C	G	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->CG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=25431460;dbSNPBuildID=131;SSR=0;SAO=0;VP=050000000009040102000100;WGT=1;VC=SNV;CFL;VLD;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	23:0:0:0:0,0:23,23:0,1:0,0	78:0:0:0:0,0:63,64:15,16:0,0
17	25749002	.	C	A	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=EXON(MODIFIER|||||TBC1D3P5|processed_transcript|NON_CODING|ENST00000586223|6|1),INTRON(MODIFIER|||||TBC1D3P5|processed_transcript|NON_CODING|ENST00000581469|4|1),INTRON(MODIFIER|||||TBC1D3P5|transcribed_unprocessed_pseudogene|NON_CODING|ENST00000579401|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	44:0:0:0:0,0:44,44:0,0:0,0	101:2:0:0:6,6:93,95:0,0:0,0
17	27062952	.	A	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AC;SOMATIC;TQSS=2;TQSS_NT=2;EFF=DOWNSTREAM(MODIFIER||||164|NEK8|protein_coding|CODING|ENST00000579671||1),DOWNSTREAM(MODIFIER||||166|NEK8|protein_coding|CODING|ENST00000579060||1),DOWNSTREAM(MODIFIER|||||NEK8|processed_transcript|CODING|ENST00000593261||1),DOWNSTREAM(MODIFIER|||||NEK8|retained_intron|CODING|ENST00000581000||1),DOWNSTREAM(MODIFIER|||||NEK8|retained_intron|CODING|ENST00000584342||1),INTRON(MODIFIER||||692|NEK8|protein_coding|CODING|ENST00000268766|4|1),INTRON(MODIFIER|||||AC010761.6|antisense|NON_CODING|ENST00000584779|1|1),INTRON(MODIFIER|||||NEK8|nonsense_mediated_decay|CODING|ENST00000543014|4|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:3:0:0:37,39:0,1:0,0:0,1	70:4:0:0:55,61:9,12:1,1:1,1
17	27291843	.	G	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||508|SEZ6|protein_coding|CODING|ENST00000335960|4|1),INTRON(MODIFIER||||919|SEZ6|protein_coding|CODING|ENST00000540632|3|1),INTRON(MODIFIER||||980|SEZ6|protein_coding|CODING|ENST00000442608|4|1),INTRON(MODIFIER||||993|SEZ6|protein_coding|CODING|ENST00000360295|4|1),INTRON(MODIFIER||||994|SEZ6|protein_coding|CODING|ENST00000317338|4|1),INTRON(MODIFIER|||||PIPOX|processed_transcript|CODING|ENST00000577182|2|1),INTRON(MODIFIER|||||PIPOX|processed_transcript|CODING|ENST00000578748|2|1),INTRON(MODIFIER|||||PIPOX|processed_transcript|CODING|ENST00000580241|2|1),INTRON(MODIFIER|||||PIPOX|processed_transcript|CODING|ENST00000580383|1|1),INTRON(MODIFIER|||||PIPOX|processed_transcript|CODING|ENST00000583215|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	44:1:0:0:0,0:0,0:43,44:0,0	108:0:0:0:6,6:1,1:101,101:0,0
17	27448044	.	C	T	.	PASS	NT=ref;QSS=23;QSS_NT=23;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||MYO18A|processed_transcript|CODING|ENST00000531267||1),DOWNSTREAM(MODIFIER|||||MYO18A|processed_transcript|CODING|ENST00000533420||1),DOWNSTREAM(MODIFIER|||||MYO18A|processed_transcript|CODING|ENST00000585573||1),DOWNSTREAM(MODIFIER|||||MYO18A|processed_transcript|CODING|ENST00000590242||1),DOWNSTREAM(MODIFIER|||||MYO18A|retained_intron|CODING|ENST00000528322||1),SYNONYMOUS_CODING(LOW|SILENT|gcG/gcA|A519|2002|MYO18A|protein_coding|CODING|ENST00000533112|6|1),SYNONYMOUS_CODING(LOW|SILENT|gcG/gcA|A519|2039|MYO18A|protein_coding|CODING|ENST00000531253|6|1),SYNONYMOUS_CODING(LOW|SILENT|gcG/gcA|A519|2054|MYO18A|protein_coding|CODING|ENST00000354329|6|1),SYNONYMOUS_CODING(LOW|SILENT|gcG/gcA|A519|2054|MYO18A|protein_coding|CODING|ENST00000527372|6|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	45:1:0:0:0,0:44,45:0,0:0,0	95:3:0:0:0,0:83,86:0,0:9,9
17	29966824	.	C	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||RP1-41C23.1|lincRNA|NON_CODING|ENST00000578650||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:0:0:0:0,0:37,37:0,0:0,0	120:2:0:0:0,1:111,112:0,0:7,8
17	30506328	.	T	A	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||523|RHOT1|protein_coding|CODING|ENST00000583994|7|1),INTRON(MODIFIER||||580|RHOT1|protein_coding|CODING|ENST00000581094|6|1),INTRON(MODIFIER||||597|RHOT1|protein_coding|CODING|ENST00000354266|6|1),INTRON(MODIFIER||||618|RHOT1|protein_coding|CODING|ENST00000333942|6|1),INTRON(MODIFIER||||650|RHOT1|protein_coding|CODING|ENST00000394692|6|1),INTRON(MODIFIER||||659|RHOT1|protein_coding|CODING|ENST00000545287|6|1),INTRON(MODIFIER||||691|RHOT1|protein_coding|CODING|ENST00000358365|6|1),INTRON(MODIFIER|||||RHOT1|nonsense_mediated_decay|CODING|ENST00000578205|7|1),INTRON(MODIFIER|||||RHOT1|nonsense_mediated_decay|CODING|ENST00000581031|6|1),INTRON(MODIFIER|||||RHOT1|processed_transcript|CODING|ENST00000580976|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:2:0:0:0,0:0,0:2,2:34,37	100:10:0:0:10,14:0,0:2,7:78,85
17	30575644	rs141430643	T	C	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||57|RHOT1|protein_coding|CODING|ENST00000584852|2|1);RSPOS=30575644;GMAF=0.0023;dbSNPBuildID=134;SSR=0;SAO=0;VP=050000000005000014000100;WGT=1;VC=SNV;ASP;KGPhase1;KGPROD	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	44:0:0:0:0,0:0,0:0,0:44,45	91:1:0:0:0,0:6,7:0,0:84,86
17	30575665	.	C	G	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||57|RHOT1|protein_coding|CODING|ENST00000584852|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	41:0:0:0:0,0:41,42:0,0:0,0	95:0:0:0:0,0:90,91:5,5:0,0
17	30870071	.	C	T	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1006|MYO1D|protein_coding|CODING|ENST00000318217|21|1),INTRON(MODIFIER||||918|MYO1D|protein_coding|CODING|ENST00000394649|23|1),INTRON(MODIFIER|||||MYO1D|retained_intron|CODING|ENST00000577352|5|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	57:1:0:0:1,1:53,54:1,1:1,1	82:0:0:0:0,0:76,77:0,0:6,6
17	31149604	.	G	C	.	PASS	NT=ref;QSS=27;QSS_NT=27;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1006|MYO1D|protein_coding|CODING|ENST00000318217|1|1),INTRON(MODIFIER||||436|MYO1D|protein_coding|CODING|ENST00000583621|1|1),INTRON(MODIFIER||||918|MYO1D|protein_coding|CODING|ENST00000394649|1|1),INTRON(MODIFIER||||961|MYO1D|protein_coding|CODING|ENST00000579584|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	56:2:0:0:0,0:0,0:54,56:0,0	95:0:0:0:0,0:6,6:89,90:0,0
17	32317818	.	G	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||512|ASIC2|protein_coding|CODING|ENST00000359872|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:0:0:0:0,0:0,0:29,29:0,0	100:4:0:0:0,0:0,0:88,92:8,8
17	32515393	.	A	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AC;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER|||||RP11-215E13.1|lincRNA|NON_CODING|ENST00000580792|2|1),UPSTREAM(MODIFIER|||||RP11-215E13.1|lincRNA|NON_CODING|ENST00000566930||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:1:0:0:33,34:0,1:0,0:0,0	98:2:0:0:88,90:8,15:0,0:0,0
17	33907768	.	T	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->GT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER||||150|AP2B1|protein_coding|CODING|ENST00000589774|1|1),UPSTREAM(MODIFIER||||220|PEX12|protein_coding|CODING|ENST00000585380||1),UPSTREAM(MODIFIER||||359|PEX12|protein_coding|CODING|ENST00000225873||1),UPSTREAM(MODIFIER|||||PEX12|non_stop_decay|CODING|ENST00000586663||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:0:0:0:0,0:0,0:0,0:37,37	90:2:0:0:0,0:1,1:7,7:80,83
17	34200160	.	T	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER||||91|CCL5|protein_coding|CODING|ENST00000293272|2|1),INTRON(MODIFIER||||91|CCL5|protein_coding|CODING|ENST00000366113|3|1),INTRON(MODIFIER|||||AC015849.2|antisense|NON_CODING|ENST00000413928|1|1),UPSTREAM(MODIFIER||||139|C17orf66|protein_coding|CODING|ENST00000587626||1),UPSTREAM(MODIFIER||||380|C17orf66|protein_coding|CODING|ENST00000589015||1),UPSTREAM(MODIFIER||||530|C17orf66|protein_coding|CODING|ENST00000592980||1),UPSTREAM(MODIFIER||||570|C17orf66|protein_coding|CODING|ENST00000311880||1),UPSTREAM(MODIFIER|||||C17orf66|nonsense_mediated_decay|CODING|ENST00000585840||1),UPSTREAM(MODIFIER|||||C17orf66|nonsense_mediated_decay|CODING|ENST00000587573||1),UPSTREAM(MODIFIER|||||C17orf66|processed_transcript|CODING|ENST00000587585||1),UPSTREAM(MODIFIER|||||C17orf66|retained_intron|CODING|ENST00000462028||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:2:0:0:0,0:0,0:0,0:38,40	124:4:0:0:0,0:7,7:0,0:113,120
17	34200174	.	G	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||91|CCL5|protein_coding|CODING|ENST00000293272|2|1),INTRON(MODIFIER||||91|CCL5|protein_coding|CODING|ENST00000366113|3|1),INTRON(MODIFIER|||||AC015849.2|antisense|NON_CODING|ENST00000413928|1|1),UPSTREAM(MODIFIER||||139|C17orf66|protein_coding|CODING|ENST00000587626||1),UPSTREAM(MODIFIER||||380|C17orf66|protein_coding|CODING|ENST00000589015||1),UPSTREAM(MODIFIER||||530|C17orf66|protein_coding|CODING|ENST00000592980||1),UPSTREAM(MODIFIER||||570|C17orf66|protein_coding|CODING|ENST00000311880||1),UPSTREAM(MODIFIER|||||C17orf66|nonsense_mediated_decay|CODING|ENST00000585840||1),UPSTREAM(MODIFIER|||||C17orf66|nonsense_mediated_decay|CODING|ENST00000587573||1),UPSTREAM(MODIFIER|||||C17orf66|processed_transcript|CODING|ENST00000587585||1),UPSTREAM(MODIFIER|||||C17orf66|retained_intron|CODING|ENST00000462028||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	41:4:0:0:0,0:0,0:37,41:0,0	115:2:0:0:5,5:0,0:108,112:0,0
17	34333809	.	G	A	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-104J23.1|antisense|NON_CODING|ENST00000590192|1|1),UPSTREAM(MODIFIER||||109|CCL14|protein_coding|CODING|ENST00000536149||1),UPSTREAM(MODIFIER||||113|CCL15|protein_coding|CODING|ENST00000354059||1),UPSTREAM(MODIFIER|||||RP11-104J23.1|antisense|NON_CODING|ENST00000588294||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	41:1:0:0:0,0:0,0:40,41:0,0	111:1:0:0:6,6:0,0:104,105:0,0
17	34841192	.	G	A	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER||||148|ZNHIT3|protein_coding|CODING|ENST00000592616||1),UPSTREAM(MODIFIER||||155|ZNHIT3|protein_coding|CODING|ENST00000225410||1),UPSTREAM(MODIFIER||||23|ZNHIT3|protein_coding|CODING|ENST00000588253||1),UPSTREAM(MODIFIER||||23|ZNHIT3|protein_coding|CODING|ENST00000590858||1),UPSTREAM(MODIFIER||||42|ZNHIT3|protein_coding|CODING|ENST00000490126||1),UPSTREAM(MODIFIER|||||ZNHIT3|nonsense_mediated_decay|CODING|ENST00000586660||1),UPSTREAM(MODIFIER|||||ZNHIT3|nonsense_mediated_decay|CODING|ENST00000590827||1),UPSTREAM(MODIFIER|||||ZNHIT3|retained_intron|CODING|ENST00000590424||1),UPSTREAM(MODIFIER|||||ZNHIT3|retained_intron|CODING|ENST00000592684||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:1:0:0:0,0:0,0:34,35:0,0	120:1:0:0:13,13:0,0:106,108:0,0
17	34855504	rs139641914	G	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||11|ZNHIT3|protein_coding|CODING|ENST00000588902||1),DOWNSTREAM(MODIFIER||||148|ZNHIT3|protein_coding|CODING|ENST00000592616||1),DOWNSTREAM(MODIFIER||||155|ZNHIT3|protein_coding|CODING|ENST00000225410||1),DOWNSTREAM(MODIFIER||||23|ZNHIT3|protein_coding|CODING|ENST00000588253||1),DOWNSTREAM(MODIFIER||||23|ZNHIT3|protein_coding|CODING|ENST00000590858||1),DOWNSTREAM(MODIFIER||||28|ZNHIT3|protein_coding|CODING|ENST00000591067||1),DOWNSTREAM(MODIFIER||||42|ZNHIT3|protein_coding|CODING|ENST00000490126||1),DOWNSTREAM(MODIFIER|||||MYO19|retained_intron|CODING|ENST00000586328||1),DOWNSTREAM(MODIFIER|||||MYO19|retained_intron|CODING|ENST00000590233||1),DOWNSTREAM(MODIFIER|||||MYO19|retained_intron|CODING|ENST00000593222||1),DOWNSTREAM(MODIFIER|||||ZNHIT3|nonsense_mediated_decay|CODING|ENST00000586660||1),DOWNSTREAM(MODIFIER|||||ZNHIT3|nonsense_mediated_decay|CODING|ENST00000590827||1),DOWNSTREAM(MODIFIER|||||ZNHIT3|retained_intron|CODING|ENST00000590424||1),INTRON(MODIFIER||||770|MYO19|protein_coding|CODING|ENST00000268852|19|1),INTRON(MODIFIER||||970|MYO19|protein_coding|CODING|ENST00000431794|23|1),INTRON(MODIFIER|||||MYO19|nonsense_mediated_decay|CODING|ENST00000586908|24|1),INTRON(MODIFIER|||||MYO19|nonsense_mediated_decay|CODING|ENST00000591794|17|1),INTRON(MODIFIER|||||MYO19|retained_intron|CODING|ENST00000588377|10|1),UPSTREAM(MODIFIER|||||MYO19|retained_intron|CODING|ENST00000592110||1),UPSTREAM(MODIFIER|||||MYO19|retained_intron|CODING|ENST00000593275||1);RSPOS=34855504;dbSNPBuildID=134;SSR=0;SAO=0;VP=050000080005000002000100;GENEINFO=MYO19:80179;WGT=1;VC=SNV;INT;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	28:0:0:0:0,0:0,0:28,32:0,0	91:9:0:0:0,0:0,0:72,83:10,14
17	35784563	.	T	C	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||132|TADA2A|protein_coding|CODING|ENST00000589153|3|1),INTRON(MODIFIER||||193|TADA2A|protein_coding|CODING|ENST00000590957|2|1),INTRON(MODIFIER||||305|TADA2A|protein_coding|CODING|ENST00000417170|3|1),INTRON(MODIFIER||||305|TADA2A|protein_coding|CODING|ENST00000586023|3|1),INTRON(MODIFIER||||443|TADA2A|protein_coding|CODING|ENST00000225396|3|1),INTRON(MODIFIER||||443|TADA2A|protein_coding|CODING|ENST00000394395|3|1),INTRON(MODIFIER||||55|TADA2A|protein_coding|CODING|ENST00000590005|2|1),INTRON(MODIFIER|||||TADA2A|nonsense_mediated_decay|CODING|ENST00000490992|3|1),INTRON(MODIFIER|||||TADA2A|nonsense_mediated_decay|CODING|ENST00000587420|3|1),INTRON(MODIFIER|||||TADA2A|processed_transcript|CODING|ENST00000589849|1|1),INTRON(MODIFIER|||||TADA2A|retained_intron|CODING|ENST00000585341|3|1),INTRON(MODIFIER|||||TADA2A|retained_intron|CODING|ENST00000587211|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	41:2:0:0:0,0:0,0:1,2:38,39	100:7:0:0:0,0:6,8:0,1:87,92
17	36608747	.	G	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1144|ARHGAP23|protein_coding|CODING|ENST00000437668|1|1),INTRON(MODIFIER||||1491|ARHGAP23|protein_coding|CODING|ENST00000431231|1|1),UPSTREAM(MODIFIER||||101|ARHGAP23|protein_coding|CODING|ENST00000549246||1),UPSTREAM(MODIFIER||||1397|ARHGAP23|protein_coding|CODING|ENST00000443378||1),UPSTREAM(MODIFIER|||||AC124789.1|antisense|NON_CODING|ENST00000561550||1),UPSTREAM(MODIFIER|||||AC124789.1|antisense|NON_CODING|ENST00000581922||1),UPSTREAM(MODIFIER|||||AC124789.1|antisense|NON_CODING|ENST00000582919||1),UPSTREAM(MODIFIER|||||AC124789.1|antisense|NON_CODING|ENST00000582968||1),UPSTREAM(MODIFIER|||||AC124789.1|retained_intron|NON_CODING|ENST00000579633||1),UPSTREAM(MODIFIER|||||AC124789.1|retained_intron|NON_CODING|ENST00000582649||1),UPSTREAM(MODIFIER|||||ARHGAP23|processed_transcript|CODING|ENST00000582409||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:0:0:0:0,0:0,0:30,30:0,0	90:1:0:0:7,7:0,0:82,83:0,0
17	36631969	.	G	T	.	PASS	NT=ref;QSS=24;QSS_NT=24;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1144|ARHGAP23|protein_coding|CODING|ENST00000437668|11|1),INTRON(MODIFIER||||1397|ARHGAP23|protein_coding|CODING|ENST00000443378|11|1),INTRON(MODIFIER||||1491|ARHGAP23|protein_coding|CODING|ENST00000431231|11|1),INTRON(MODIFIER|||||ARHGAP23|nonsense_mediated_decay|CODING|ENST00000548333|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	46:0:0:0:0,0:0,0:46,47:0,0	97:1:0:0:0,0:0,0:85,86:11,11
17	36768402	.	T	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:1:0:0:0,0:0,1:0,0:36,37	97:2:0:0:0,0:12,12:0,0:83,85
17	38356466	.	G	A	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||456|RAPGEFL1|protein_coding|CODING|ENST00000264644||1),DOWNSTREAM(MODIFIER||||456|RAPGEFL1|protein_coding|CODING|ENST00000436615||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:1:0:0:0,0:0,0:35,36:0,0	99:1:0:0:9,9:0,1:89,90:0,0
17	39411311	.	C	T	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||154|KRTAP9-4|protein_coding|CODING|ENST00000334109||1),INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER||||169|KRTAP9-9|protein_coding|CODING|ENST00000394008||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	42:1:0:0:0,0:41,45:0,0:0,0	110:1:0:0:0,0:101,103:0,0:8,9
17	40644184	.	T	C	.	PASS	NT=ref;QSS=25;QSS_NT=25;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||ATP6V0A1|processed_transcript|CODING|ENST00000589759||1),DOWNSTREAM(MODIFIER|||||ATP6V0A1|retained_intron|CODING|ENST00000587882||1),INTRON(MODIFIER||||483|ATP6V0A1|protein_coding|CODING|ENST00000544137|4|1),INTRON(MODIFIER||||788|ATP6V0A1|protein_coding|CODING|ENST00000537728|10|1),INTRON(MODIFIER||||794|ATP6V0A1|protein_coding|CODING|ENST00000585525|10|1),INTRON(MODIFIER||||831|ATP6V0A1|protein_coding|CODING|ENST00000393829|11|1),INTRON(MODIFIER||||837|ATP6V0A1|protein_coding|CODING|ENST00000343619|11|1),INTRON(MODIFIER||||837|ATP6V0A1|protein_coding|CODING|ENST00000546249|11|1),INTRON(MODIFIER||||838|ATP6V0A1|protein_coding|CODING|ENST00000264649|11|1),INTRON(MODIFIER|||||ATP6V0A1|retained_intron|CODING|ENST00000586315|1|1),UPSTREAM(MODIFIER|||||MIR548AT|miRNA|NON_CODING|ENST00000578714||1),UPSTREAM(MODIFIER|||||RP11-194N12.2|sense_intronic|NON_CODING|ENST00000591343||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	52:2:0:0:0,0:0,0:0,0:50,52	97:6:0:0:0,0:6,9:0,1:85,91
17	42202705	.	T	C	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||RP11-546M21.6|processed_transcript|NON_CODING|ENST00000585899||1),INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER||||1037|HDAC5|protein_coding|CODING|ENST00000336057||1),UPSTREAM(MODIFIER||||1122|HDAC5|protein_coding|CODING|ENST00000393622||1),UPSTREAM(MODIFIER||||1122|HDAC5|protein_coding|CODING|ENST00000586802||1),UPSTREAM(MODIFIER||||1123|HDAC5|protein_coding|CODING|ENST00000225983||1),UPSTREAM(MODIFIER||||39|HDAC5|protein_coding|CODING|ENST00000587135||1),UPSTREAM(MODIFIER||||78|HDAC5|protein_coding|CODING|ENST00000588703||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	41:0:0:0:0,0:0,0:1,1:40,42	105:1:0:0:0,0:6,6:0,0:98,102
17	42345690	.	G	A	.	PASS	NT=ref;QSS=25;QSS_NT=25;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER||||911|SLC4A1|protein_coding|CODING|ENST00000262418||1),UPSTREAM(MODIFIER|||||SLC4A1|retained_intron|CODING|ENST00000497360||1),UPSTREAM(MODIFIER|||||SLC4A1|retained_intron|CODING|ENST00000498270||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	50:0:0:0:0,0:0,0:50,50:0,0	105:7:0:0:10,11:0,4:87,89:1,1
17	43133249	.	A	C	.	PASS	NT=ref;QSS=26;QSS_NT=26;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||132|DCAKD|protein_coding|CODING|ENST00000310604|1|1),INTRON(MODIFIER||||231|DCAKD|protein_coding|CODING|ENST00000342350|1|1),INTRON(MODIFIER||||496|NMT1|protein_coding|CODING|ENST00000592782|1|1),UPSTREAM(MODIFIER||||208|DCAKD|protein_coding|CODING|ENST00000593094||1),UPSTREAM(MODIFIER||||231|DCAKD|protein_coding|CODING|ENST00000588499||1),UPSTREAM(MODIFIER|||||DCAKD|processed_transcript|CODING|ENST00000588295||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	51:0:0:0:51,51:0,0:0,0:0,0	105:0:0:0:93,93:12,12:0,0:0,0
17	43693210	rs62066117	T	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=TT->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||AC126544.2|processed_transcript|NON_CODING|ENST00000455565||1),UPSTREAM(MODIFIER|||||AC126544.2|processed_transcript|NON_CODING|ENST00000583740||1),UPSTREAM(MODIFIER|||||AC126544.2|processed_transcript|NON_CODING|ENST00000585118||1),UPSTREAM(MODIFIER|||||AC126544.2|processed_transcript|NON_CODING|ENST00000585122||1),UPSTREAM(MODIFIER|||||AC126544.2|processed_transcript|NON_CODING|ENST00000591271||1),UPSTREAM(MODIFIER|||||AC126544.2|retained_intron|NON_CODING|ENST00000582491||1);RSPOS=43693210;dbSNPBuildID=129;SSR=0;SAO=0;VP=050000000001000002000100;WGT=1;VC=SNV;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	58:1:0:0:0,0:0,1:0,0:57,59	126:1:0:0:0,0:11,13:0,0:114,116
17	44330215	.	C	T	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	46:1:0:0:0,0:45,52:0,0:0,0	88:2:0:0:0,0:82,95:0,0:4,6
17	45631691	.	C	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->AC;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER||||200|NPEPPS|protein_coding|CODING|ENST00000525007|3|1),INTRON(MODIFIER||||839|NPEPPS|protein_coding|CODING|ENST00000544660|2|1),INTRON(MODIFIER||||915|NPEPPS|protein_coding|CODING|ENST00000530173|3|1),INTRON(MODIFIER||||919|NPEPPS|protein_coding|CODING|ENST00000322157|2|1),INTRON(MODIFIER|||||NPEPPS|nonsense_mediated_decay|CODING|ENST00000526247|3|1),INTRON(MODIFIER|||||NPEPPS|nonsense_mediated_decay|CODING|ENST00000527298|2|1),INTRON(MODIFIER|||||NPEPPS|nonsense_mediated_decay|CODING|ENST00000532729|3|1),INTRON(MODIFIER|||||NPEPPS|nonsense_mediated_decay|CODING|ENST00000534691|2|1),INTRON(MODIFIER|||||NPEPPS|processed_transcript|CODING|ENST00000525037|2|1),INTRON(MODIFIER|||||NPEPPS|processed_transcript|CODING|ENST00000528751|3|1),INTRON(MODIFIER|||||NPEPPS|processed_transcript|CODING|ENST00000533573|2|1),INTRON(MODIFIER|||||NPEPPS|retained_intron|CODING|ENST00000527200|4|1),UPSTREAM(MODIFIER|||||Y_RNA|misc_RNA|NON_CODING|ENST00000384007||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	47:0:0:0:0,2:47,48:0,0:0,0	124:1:0:0:7,12:116,120:0,0:0,0
17	45645250	.	A	G	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||200|NPEPPS|protein_coding|CODING|ENST00000525007|3|1),INTRON(MODIFIER||||839|NPEPPS|protein_coding|CODING|ENST00000544660|2|1),INTRON(MODIFIER||||915|NPEPPS|protein_coding|CODING|ENST00000530173|3|1),INTRON(MODIFIER||||919|NPEPPS|protein_coding|CODING|ENST00000322157|2|1),INTRON(MODIFIER|||||NPEPPS|nonsense_mediated_decay|CODING|ENST00000526247|4|1),INTRON(MODIFIER|||||NPEPPS|nonsense_mediated_decay|CODING|ENST00000527298|2|1),INTRON(MODIFIER|||||NPEPPS|nonsense_mediated_decay|CODING|ENST00000532729|3|1),INTRON(MODIFIER|||||NPEPPS|nonsense_mediated_decay|CODING|ENST00000534691|2|1),INTRON(MODIFIER|||||NPEPPS|processed_transcript|CODING|ENST00000525037|2|1),INTRON(MODIFIER|||||NPEPPS|processed_transcript|CODING|ENST00000528751|3|1),INTRON(MODIFIER|||||NPEPPS|processed_transcript|CODING|ENST00000533573|2|1),INTRON(MODIFIER|||||NPEPPS|retained_intron|CODING|ENST00000527200|4|1),UPSTREAM(MODIFIER|||||NPEPPS|retained_intron|CODING|ENST00000527824||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:0:0:0:39,42:0,0:0,0:0,0	113:1:0:0:105,108:1,1:6,10:0,0
17	45828311	.	A	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||535|TBX21|protein_coding|CODING|ENST00000177694||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:0:0:0:37,37:0,0:0,0:0,0	78:1:0:0:73,74:0,0:0,0:4,4
17	48787237	.	G	A	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER||||368|ANKRD40|protein_coding|CODING|ENST00000285243||1),UPSTREAM(MODIFIER|||||ANKRD40|retained_intron|CODING|ENST00000507114||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:1:0:0:0,0:0,0:38,39:0,0	98:5:0:0:5,5:0,0:88,93:0,0
17	48873514	.	C	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||RP11-294J22.5|processed_pseudogene|NON_CODING|ENST00000510589||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:0:0:0:0,0:29,30:1,1:0,0	81:1:0:0:0,0:75,79:0,0:5,5
17	48974904	.	A	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||TOB1-AS1|antisense|NON_CODING|ENST00000514358|2|1),INTRON(MODIFIER|||||TOB1-AS1|antisense|NON_CODING|ENST00000523470|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:1:0:0:31,33:0,0:0,0:0,0	94:0:0:0:89,89:0,0:5,5:0,0
17	48974909	.	A	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||TOB1-AS1|antisense|NON_CODING|ENST00000514358|2|1),INTRON(MODIFIER|||||TOB1-AS1|antisense|NON_CODING|ENST00000523470|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:1:0:0:30,32:0,0:0,0:0,0	94:0:0:0:89,89:0,0:5,5:0,0
17	49855638	.	G	A	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||253|CA10|protein_coding|CODING|ENST00000570565|3|1),INTRON(MODIFIER||||275|CA10|protein_coding|CODING|ENST00000575181|4|1),INTRON(MODIFIER||||328|CA10|protein_coding|CODING|ENST00000285273|4|1),INTRON(MODIFIER||||328|CA10|protein_coding|CODING|ENST00000442502|4|1),INTRON(MODIFIER||||328|CA10|protein_coding|CODING|ENST00000451037|3|1),INTRON(MODIFIER||||334|CA10|protein_coding|CODING|ENST00000340813|4|1),INTRON(MODIFIER|||||CA10|nonsense_mediated_decay|CODING|ENST00000571371|4|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:0:0:0:0,0:0,0:36,36:0,0	102:1:0:0:12,12:0,0:89,90:0,0
17	51436822	.	C	A	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	44:2:0:0:0,0:42,44:0,0:0,0	89:1:0:0:7,7:81,82:0,0:0,0
17	51517809	.	T	C	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||CTD-2535P7.1|processed_pseudogene|NON_CODING|ENST00000572092||1),DOWNSTREAM(MODIFIER|||||CTD-2535P7.2|processed_pseudogene|NON_CODING|ENST00000575289||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	42:0:0:0:0,0:0,0:0,0:42,42	85:1:0:0:0,0:10,10:0,0:74,76
17	51761789	.	A	T	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||RP11-312B18.1|processed_pseudogene|NON_CODING|ENST00000571784||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:0:0:0:39,39:0,0:0,0:0,0	108:0:0:0:101,101:0,0:0,0:7,7
17	54028217	.	C	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:2:0:0:0,0:31,33:0,0:0,0	93:3:0:0:0,1:81,82:0,1:9,9
17	56786687	.	C	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||RAD51C|processed_transcript|CODING|ENST00000487921||1),INTRON(MODIFIER||||134|RAD51C|protein_coding|CODING|ENST00000461271|4|1),INTRON(MODIFIER||||212|RAD51C|protein_coding|CODING|ENST00000425173|4|1),INTRON(MODIFIER||||346|RAD51C|protein_coding|CODING|ENST00000583539|4|1),INTRON(MODIFIER||||376|RAD51C|protein_coding|CODING|ENST00000337432|4|1),INTRON(MODIFIER|||||RAD51C|nonsense_mediated_decay|CODING|ENST00000475762|4|1),INTRON(MODIFIER|||||RAD51C|nonsense_mediated_decay|CODING|ENST00000482007|3|1),INTRON(MODIFIER|||||RAD51C|nonsense_mediated_decay|CODING|ENST00000487525|4|1),UPSTREAM(MODIFIER||||107|RAD51C|protein_coding|CODING|ENST00000584804||1),UPSTREAM(MODIFIER|||||RAD51C|retained_intron|CODING|ENST00000578151||1),UPSTREAM(MODIFIER|||||RAD51C|retained_intron|CODING|ENST00000581221||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	42:2:0:0:0,1:39,40:1,1:0,0	104:1:0:0:0,0:99,100:0,0:4,4
17	59263942	.	G	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||182|BCAS3|protein_coding|CODING|ENST00000587002|2|1),INTRON(MODIFIER||||684|BCAS3|protein_coding|CODING|ENST00000588874|14|1),INTRON(MODIFIER||||699|BCAS3|protein_coding|CODING|ENST00000585744|15|1),INTRON(MODIFIER||||913|BCAS3|protein_coding|CODING|ENST00000407086|22|1),INTRON(MODIFIER||||928|BCAS3|protein_coding|CODING|ENST00000390652|23|1),INTRON(MODIFIER||||928|BCAS3|protein_coding|CODING|ENST00000589222|22|1),INTRON(MODIFIER||||935|BCAS3|protein_coding|CODING|ENST00000408905|21|1),INTRON(MODIFIER||||950|BCAS3|protein_coding|CODING|ENST00000588462|22|1),INTRON(MODIFIER|||||BCAS3|processed_transcript|CODING|ENST00000585812|1|1),INTRON(MODIFIER|||||BCAS3|processed_transcript|CODING|ENST00000585979|7|1),INTRON(MODIFIER|||||BCAS3|processed_transcript|CODING|ENST00000587294|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:0:0:0:0,0:0,0:34,35:0,0	119:1:0:0:0,1:0,0:111,111:7,7
17	59629692	.	A	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:0:0:0:35,37:0,0:0,0:0,0	76:0:0:0:70,71:0,0:6,6:0,0
17	60455377	.	A	C	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|aAa/aCa|K46T|490|EFCAB3|protein_coding|CODING|ENST00000450662|3|1),UPSTREAM(MODIFIER||||161|EFCAB3|protein_coding|CODING|ENST00000518576||1),UPSTREAM(MODIFIER||||173|EFCAB3|protein_coding|CODING|ENST00000520404||1),UPSTREAM(MODIFIER||||438|EFCAB3|protein_coding|CODING|ENST00000305286||1),UPSTREAM(MODIFIER|||||RP11-51L5.2|processed_pseudogene|NON_CODING|ENST00000495438||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:0:0:0:35,35:0,0:0,0:0,0	94:1:0:0:87,88:6,6:0,0:0,0
17	60476819	.	G	T	.	PASS	NT=ref;QSS=25;QSS_NT=25;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||161|EFCAB3|protein_coding|CODING|ENST00000518576||1),DOWNSTREAM(MODIFIER|||||RPS23P7|processed_pseudogene|NON_CODING|ENST00000466210||1),INTRON(MODIFIER||||173|EFCAB3|protein_coding|CODING|ENST00000520404|6|1),INTRON(MODIFIER||||438|EFCAB3|protein_coding|CODING|ENST00000305286|6|1),INTRON(MODIFIER||||490|EFCAB3|protein_coding|CODING|ENST00000450662|8|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	49:0:0:0:0,0:0,0:49,49:0,0	105:2:0:0:0,0:0,0:98,99:5,6
17	60533175	rs200881666	G	A	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER||||601|TLK2|protein_coding|CODING|ENST00000582809||1);RSPOS=60533175;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:1:0:0:0,0:0,0:37,38:0,0	75:1:0:0:5,5:0,0:69,70:0,0
17	61247527	.	A	G	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||151|TANC2|protein_coding|CODING|ENST00000580068|3|1),INTRON(MODIFIER||||1990|TANC2|protein_coding|CODING|ENST00000424789|3|1),INTRON(MODIFIER||||2000|TANC2|protein_coding|CODING|ENST00000389520|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:3:0:0:35,37:0,0:0,0:0,1	85:0:0:0:74,76:1,1:10,10:0,0
17	62911582	.	C	G	.	PASS	NT=ref;QSS=23;QSS_NT=23;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1634|LRRC37A3|protein_coding|CODING|ENST00000584306|1|1),INTRON(MODIFIER||||235|LRRC37A3|protein_coding|CODING|ENST00000581368|1|1),INTRON(MODIFIER||||752|LRRC37A3|protein_coding|CODING|ENST00000339474|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	45:1:0:0:0,0:44,46:0,0:0,0	117:2:0:0:0,0:101,106:14,16:0,0
17	62911593	.	A	G	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1634|LRRC37A3|protein_coding|CODING|ENST00000584306|1|1),INTRON(MODIFIER||||235|LRRC37A3|protein_coding|CODING|ENST00000581368|1|1),INTRON(MODIFIER||||752|LRRC37A3|protein_coding|CODING|ENST00000339474|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	42:1:0:0:41,43:0,0:0,0:0,0	120:1:0:0:105,109:0,0:14,16:0,0
17	64598548	.	C	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER||||672|PRKCA|protein_coding|CODING|ENST00000413366|3|1),INTRON(MODIFIER|||||PRKCA|nonsense_mediated_decay|CODING|ENST00000578063|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:0:0:0:0,0:34,50:0,0:0,1	65:1:0:0:0,0:57,79:0,0:7,15
17	64601274	.	T	A	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||672|PRKCA|protein_coding|CODING|ENST00000413366|3|1),INTRON(MODIFIER|||||PRKCA|nonsense_mediated_decay|CODING|ENST00000578063|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	43:1:0:0:0,0:0,0:0,0:42,43	97:0:0:0:8,8:0,0:0,0:89,89
17	66267668	.	C	T	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||128|SLC16A6|protein_coding|CODING|ENST00000583477||1),DOWNSTREAM(MODIFIER||||84|SLC16A6|protein_coding|CODING|ENST00000582867||1),INTRON(MODIFIER||||525|ARSG|protein_coding|CODING|ENST00000448504|1|1),INTRON(MODIFIER|||||ARSG|processed_transcript|CODING|ENST00000578726|1|1),SYNONYMOUS_CODING(LOW|SILENT|ccG/ccA|P211|523|SLC16A6|protein_coding|CODING|ENST00000327268|6|1),SYNONYMOUS_CODING(LOW|SILENT|ccG/ccA|P211|523|SLC16A6|protein_coding|CODING|ENST00000580666|5|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:0:0:0:0,0:40,40:0,0:0,0	114:2:0:0:0,0:97,99:0,0:15,15
17	67111367	.	T	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1617|ABCA6|protein_coding|CODING|ENST00000284425|12|1),INTRON(MODIFIER|||||ABCA6|processed_transcript|CODING|ENST00000592493|2|1),INTRON(MODIFIER|||||ABCA6|retained_intron|CODING|ENST00000589803|2|1),INTRON(MODIFIER|||||ABCA6|retained_intron|CODING|ENST00000590311|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:0:0:0:0,0:0,0:0,0:33,33	126:1:0:0:0,0:8,8:0,0:117,118
17	67142423	.	G	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||1543|ABCA10|protein_coding|CODING|ENST00000269081||1),DOWNSTREAM(MODIFIER||||45|ABCA10|protein_coding|CODING|ENST00000522787||1),DOWNSTREAM(MODIFIER||||466|ABCA10|protein_coding|CODING|ENST00000416101||1),DOWNSTREAM(MODIFIER|||||ABCA10|nonsense_mediated_decay|CODING|ENST00000518929||1),DOWNSTREAM(MODIFIER|||||ABCA10|nonsense_mediated_decay|CODING|ENST00000522406||1),DOWNSTREAM(MODIFIER|||||ABCA10|nonsense_mediated_decay|CODING|ENST00000523419||1),DOWNSTREAM(MODIFIER|||||ABCA10|processed_transcript|CODING|ENST00000519732||1),DOWNSTREAM(MODIFIER|||||ABCA10|retained_intron|CODING|ENST00000524231||1),DOWNSTREAM(MODIFIER|||||ABCA10|retained_intron|CODING|ENST00000588514||1),INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER||||1617|ABCA6|protein_coding|CODING|ENST00000284425||1),UPSTREAM(MODIFIER||||185|ABCA6|protein_coding|CODING|ENST00000590645||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	80:13:3:0:1,2:1,2:65,114:0,0	282:59:5:0:2,15:11,19:207,391:3,8
17	68099092	.	T	C	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||KCNJ16|retained_intron|CODING|ENST00000588112||1),INTRON(MODIFIER||||34|KCNJ16|protein_coding|CODING|ENST00000591891|1|1),INTRON(MODIFIER||||418|KCNJ16|protein_coding|CODING|ENST00000283936|2|1),INTRON(MODIFIER||||418|KCNJ16|protein_coding|CODING|ENST00000392671|2|1),INTRON(MODIFIER||||418|KCNJ16|protein_coding|CODING|ENST00000589377|1|1),INTRON(MODIFIER||||457|KCNJ16|protein_coding|CODING|ENST00000586462|1|1),INTRON(MODIFIER|||||AC002539.1|antisense|NON_CODING|ENST00000435112|2|1),UPSTREAM(MODIFIER||||34|KCNJ16|protein_coding|CODING|ENST00000587892||1),UPSTREAM(MODIFIER||||418|KCNJ16|protein_coding|CODING|ENST00000392670||1),UPSTREAM(MODIFIER||||453|KCNJ16|protein_coding|CODING|ENST00000585558||1),UPSTREAM(MODIFIER||||63|KCNJ16|protein_coding|CODING|ENST00000587698||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:0:0:0:0,0:0,0:0,0:36,36	96:1:0:0:0,0:11,12:0,0:84,85
17	68887412	.	G	A	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:0:0:0:0,0:0,0:37,37:0,0	92:0:0:0:4,4:0,0:88,88:0,0
17	70502586	.	T	C	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||LINC00511|lincRNA|NON_CODING|ENST00000453722|1|1),INTRON(MODIFIER|||||LINC00511|lincRNA|NON_CODING|ENST00000457958|1|1),INTRON(MODIFIER|||||LINC00511|lincRNA|NON_CODING|ENST00000580861|1|1),INTRON(MODIFIER|||||LINC00511|lincRNA|NON_CODING|ENST00000581801|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	42:1:0:0:0,0:0,0:0,0:41,42	96:2:0:0:0,0:5,5:0,0:89,92
17	73181458	.	C	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER||||52|SUMO2|protein_coding|CODING|ENST00000578238||1),UPSTREAM(MODIFIER||||71|SUMO2|protein_coding|CODING|ENST00000314523||1),UPSTREAM(MODIFIER||||95|SUMO2|protein_coding|CODING|ENST00000420826||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	52:4:0:0:0,0:47,51:1,1:0,0	106:8:0:0:0,0:93,101:0,0:5,7
17	73290815	rs183605266	A	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=73290815;GMAF=0.0073;dbSNPBuildID=135;SSR=0;SAO=0;VP=050000000005000014000100;WGT=1;VC=SNV;ASP;KGPhase1;KGPROD	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:0:0:0:33,34:0,0:0,0:0,0	113:0:0:0:104,104:0,0:9,9:0,0
17	74130807	.	T	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||421|FOXJ1|protein_coding|CODING|ENST00000322957||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	51:0:0:0:0,0:1,1:0,0:50,50	111:4:0:0:0,0:6,7:3,4:98,101
17	75141275	.	C	T	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||13|SEC14L1|protein_coding|CODING|ENST00000561721||1),DOWNSTREAM(MODIFIER||||14|SEC14L1|protein_coding|CODING|ENST00000588880||1),DOWNSTREAM(MODIFIER|||||SEC14L1|retained_intron|CODING|ENST00000588696||1),INTRON(MODIFIER||||444|SEC14L1|protein_coding|CODING|ENST00000589827|4|1),INTRON(MODIFIER||||59|SEC14L1|protein_coding|CODING|ENST00000587820|3|1),INTRON(MODIFIER||||681|SEC14L1|protein_coding|CODING|ENST00000591437|1|1),INTRON(MODIFIER||||70|SEC14L1|protein_coding|CODING|ENST00000586429|3|1),INTRON(MODIFIER||||715|SEC14L1|protein_coding|CODING|ENST00000413679|3|1),INTRON(MODIFIER||||715|SEC14L1|protein_coding|CODING|ENST00000430767|4|1),INTRON(MODIFIER||||715|SEC14L1|protein_coding|CODING|ENST00000436233|3|1),INTRON(MODIFIER||||715|SEC14L1|protein_coding|CODING|ENST00000585618|3|1),INTRON(MODIFIER||||719|SEC14L1|protein_coding|CODING|ENST00000392476|5|1),INTRON(MODIFIER||||719|SEC14L1|protein_coding|CODING|ENST00000443798|3|1),INTRON(MODIFIER|||||SEC14L1|nonsense_mediated_decay|CODING|ENST00000591786|1|1),INTRON(MODIFIER|||||SEC14L1|processed_transcript|CODING|ENST00000586390|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	60:0:0:0:0,0:59,61:0,0:1,1	126:4:0:0:0,1:112,115:0,0:10,11
17	75481089	.	T	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||189|SEPT9|protein_coding|CODING|ENST00000592420||1),INTRON(MODIFIER||||103|SEPT9|protein_coding|CODING|ENST00000589920|1|1),INTRON(MODIFIER||||106|SEPT9|protein_coding|CODING|ENST00000586521|2|1),INTRON(MODIFIER||||114|SEPT9|protein_coding|CODING|ENST00000586128|3|1),INTRON(MODIFIER||||123|SEPT9|protein_coding|CODING|ENST00000591472|2|1),INTRON(MODIFIER||||134|SEPT9|protein_coding|CODING|ENST00000590938|2|1),INTRON(MODIFIER||||143|SEPT9|protein_coding|CODING|ENST00000585638|2|1),INTRON(MODIFIER||||150|SEPT9|protein_coding|CODING|ENST00000586433|2|1),INTRON(MODIFIER||||156|SEPT9|protein_coding|CODING|ENST00000591020|2|1),INTRON(MODIFIER||||158|SEPT9|protein_coding|CODING|ENST00000590059|3|1),INTRON(MODIFIER||||164|SEPT9|protein_coding|CODING|ENST00000585929|2|1),INTRON(MODIFIER||||194|SEPT9|protein_coding|CODING|ENST00000591704|2|1),INTRON(MODIFIER||||208|SEPT9|protein_coding|CODING|ENST00000588958|2|1),INTRON(MODIFIER||||208|SEPT9|protein_coding|CODING|ENST00000593189|2|1),INTRON(MODIFIER||||335|SEPT9|protein_coding|CODING|ENST00000541152|2|1),INTRON(MODIFIER||||335|SEPT9|protein_coding|CODING|ENST00000591088|2|1),INTRON(MODIFIER||||335|SEPT9|protein_coding|CODING|ENST00000592951|2|1),INTRON(MODIFIER||||362|SEPT9|protein_coding|CODING|ENST00000585930|2|1),INTRON(MODIFIER||||422|SEPT9|protein_coding|CODING|ENST00000427674|3|1),INTRON(MODIFIER||||422|SEPT9|protein_coding|CODING|ENST00000431235|4|1),INTRON(MODIFIER||||422|SEPT9|protein_coding|CODING|ENST00000449803|4|1),INTRON(MODIFIER||||422|SEPT9|protein_coding|CODING|ENST00000588690|3|1),INTRON(MODIFIER||||474|SEPT9|protein_coding|CODING|ENST00000427180|2|1),INTRON(MODIFIER||||567|SEPT9|protein_coding|CODING|ENST00000591198|3|1),INTRON(MODIFIER||||568|SEPT9|protein_coding|CODING|ENST00000329047|3|1),INTRON(MODIFIER||||568|SEPT9|protein_coding|CODING|ENST00000590294|3|1),INTRON(MODIFIER||||579|SEPT9|protein_coding|CODING|ENST00000423034|3|1),INTRON(MODIFIER||||57|SEPT9|protein_coding|CODING|ENST00000590917|2|1),INTRON(MODIFIER||||586|SEPT9|protein_coding|CODING|ENST00000427177|4|1),INTRON(MODIFIER|||||SEPT9|nonsense_mediated_decay|CODING|ENST00000588575|2|1),INTRON(MODIFIER|||||SEPT9|processed_transcript|CODING|ENST00000592481|2|1),UPSTREAM(MODIFIER|||||SEPT9|retained_intron|CODING|ENST00000589250||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	43:5:0:0:0,0:1,3:1,2:36,61	145:20:0:0:0,0:7,19:1,8:117,183
17	75627239	.	A	G	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:0:0:0:37,37:0,0:0,0:0,0	102:0:0:0:90,92:0,0:12,13:0,0
17	75869133	.	A	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AC;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	48:1:0:0:47,47:0,1:0,0:0,0	126:6:0:0:109,111:11,15:0,0:0,0
17	76206997	.	C	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||303|AFMID|protein_coding|CODING|ENST00000409257||1),DOWNSTREAM(MODIFIER||||308|AFMID|protein_coding|CODING|ENST00000327898||1),DOWNSTREAM(MODIFIER||||84|AFMID|protein_coding|CODING|ENST00000591952||1),DOWNSTREAM(MODIFIER||||93|AFMID|protein_coding|CODING|ENST00000588800||1),DOWNSTREAM(MODIFIER|||||AFMID|nonsense_mediated_decay|CODING|ENST00000588199||1),DOWNSTREAM(MODIFIER|||||AFMID|processed_transcript|CODING|ENST00000585419||1),DOWNSTREAM(MODIFIER|||||AFMID|processed_transcript|CODING|ENST00000587750||1),DOWNSTREAM(MODIFIER|||||AFMID|processed_transcript|CODING|ENST00000589664||1),DOWNSTREAM(MODIFIER|||||RP11-219G17.6|processed_pseudogene|NON_CODING|ENST00000588528||1),INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER||||120|BIRC5|protein_coding|CODING|ENST00000590946||1),UPSTREAM(MODIFIER||||137|BIRC5|protein_coding|CODING|ENST00000374948||1),UPSTREAM(MODIFIER||||142|BIRC5|protein_coding|CODING|ENST00000350051||1),UPSTREAM(MODIFIER||||165|BIRC5|protein_coding|CODING|ENST00000301633||1),UPSTREAM(MODIFIER||||74|BIRC5|protein_coding|CODING|ENST00000590449||1),UPSTREAM(MODIFIER||||78|BIRC5|protein_coding|CODING|ENST00000592734||1),UPSTREAM(MODIFIER|||||BIRC5|nonsense_mediated_decay|CODING|ENST00000590925||1),UPSTREAM(MODIFIER|||||BIRC5|retained_intron|CODING|ENST00000592115||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	43:7:0:0:0,0:36,43:0,0:0,0	96:8:0:0:0,0:83,90:0,0:5,6
17	76206998	rs7503132	A	G	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||303|AFMID|protein_coding|CODING|ENST00000409257||1),DOWNSTREAM(MODIFIER||||308|AFMID|protein_coding|CODING|ENST00000327898||1),DOWNSTREAM(MODIFIER||||84|AFMID|protein_coding|CODING|ENST00000591952||1),DOWNSTREAM(MODIFIER||||93|AFMID|protein_coding|CODING|ENST00000588800||1),DOWNSTREAM(MODIFIER|||||AFMID|nonsense_mediated_decay|CODING|ENST00000588199||1),DOWNSTREAM(MODIFIER|||||AFMID|processed_transcript|CODING|ENST00000585419||1),DOWNSTREAM(MODIFIER|||||AFMID|processed_transcript|CODING|ENST00000587750||1),DOWNSTREAM(MODIFIER|||||AFMID|processed_transcript|CODING|ENST00000589664||1),DOWNSTREAM(MODIFIER|||||RP11-219G17.6|processed_pseudogene|NON_CODING|ENST00000588528||1),INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER||||120|BIRC5|protein_coding|CODING|ENST00000590946||1),UPSTREAM(MODIFIER||||137|BIRC5|protein_coding|CODING|ENST00000374948||1),UPSTREAM(MODIFIER||||142|BIRC5|protein_coding|CODING|ENST00000350051||1),UPSTREAM(MODIFIER||||165|BIRC5|protein_coding|CODING|ENST00000301633||1),UPSTREAM(MODIFIER||||74|BIRC5|protein_coding|CODING|ENST00000590449||1),UPSTREAM(MODIFIER||||78|BIRC5|protein_coding|CODING|ENST00000592734||1),UPSTREAM(MODIFIER|||||BIRC5|nonsense_mediated_decay|CODING|ENST00000590925||1),UPSTREAM(MODIFIER|||||BIRC5|retained_intron|CODING|ENST00000592115||1);RSPOS=76206998;GMAF=0.1909;dbSNPBuildID=116;SSR=0;SAO=0;VP=050100000005000116000100;WGT=1;VC=SNV;SLO;ASP;GNO;KGPhase1;KGPROD;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	43:7:0:0:36,42:0,1:0,0:0,0	96:7:0:0:80,82:0,2:9,11:0,1
17	77277338	.	T	C	.	PASS	NT=ref;QSS=27;QSS_NT=27;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||312|RBFOX3|protein_coding|CODING|ENST00000415831|2|1),INTRON(MODIFIER||||312|RBFOX3|protein_coding|CODING|ENST00000453134|3|1),INTRON(MODIFIER||||312|RBFOX3|protein_coding|CODING|ENST00000580155|3|1),INTRON(MODIFIER||||325|RBFOX3|protein_coding|CODING|ENST00000584778|3|1),INTRON(MODIFIER||||358|RBFOX3|protein_coding|CODING|ENST00000583458|2|1),INTRON(MODIFIER|||||RBFOX3|processed_transcript|CODING|ENST00000578887|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	63:0:0:0:0,0:0,0:0,0:63,63	85:0:0:0:0,0:7,7:0,0:78,78
17	77277339	.	G	A	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||312|RBFOX3|protein_coding|CODING|ENST00000415831|2|1),INTRON(MODIFIER||||312|RBFOX3|protein_coding|CODING|ENST00000453134|3|1),INTRON(MODIFIER||||312|RBFOX3|protein_coding|CODING|ENST00000580155|3|1),INTRON(MODIFIER||||325|RBFOX3|protein_coding|CODING|ENST00000584778|3|1),INTRON(MODIFIER||||358|RBFOX3|protein_coding|CODING|ENST00000583458|2|1),INTRON(MODIFIER|||||RBFOX3|processed_transcript|CODING|ENST00000578887|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	63:0:0:0:0,0:0,0:63,63:0,0	86:0:0:0:5,5:1,1:80,80:0,0
17	77508828	.	G	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||312|RBFOX3|protein_coding|CODING|ENST00000453134|1|1),INTRON(MODIFIER||||312|RBFOX3|protein_coding|CODING|ENST00000580155|1|1),UPSTREAM(MODIFIER||||325|RBFOX3|protein_coding|CODING|ENST00000584778||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	22:0:0:0:0,0:0,0:22,28:0,0	81:10:0:0:11,20:0,0:59,86:1,2
17	78563999	.	T	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=TT->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER||||1177|RPTOR|protein_coding|CODING|ENST00000544334|1|1),INTRON(MODIFIER||||1335|RPTOR|protein_coding|CODING|ENST00000306801|1|1),INTRON(MODIFIER||||329|RPTOR|protein_coding|CODING|ENST00000537330|1|1),INTRON(MODIFIER||||379|RPTOR|protein_coding|CODING|ENST00000570891|1|1),INTRON(MODIFIER|||||RPTOR|nonsense_mediated_decay|CODING|ENST00000574767|1|1),INTRON(MODIFIER|||||RPTOR|processed_transcript|CODING|ENST00000573746|1|1),INTRON(MODIFIER|||||RPTOR|processed_transcript|CODING|ENST00000577161|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:0:0:0:0,0:0,0:0,0:37,38	126:1:0:0:0,0:5,5:0,0:120,125
17	78674476	.	A	G	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1177|RPTOR|protein_coding|CODING|ENST00000544334|3|1),INTRON(MODIFIER||||1335|RPTOR|protein_coding|CODING|ENST00000306801|3|1),INTRON(MODIFIER||||329|RPTOR|protein_coding|CODING|ENST00000537330|2|1),INTRON(MODIFIER||||379|RPTOR|protein_coding|CODING|ENST00000570891|3|1),INTRON(MODIFIER|||||RPTOR|nonsense_mediated_decay|CODING|ENST00000574767|2|1),INTRON(MODIFIER|||||RPTOR|processed_transcript|CODING|ENST00000577161|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:4:0:0:35,50:0,0:0,1:0,0	95:11:5:0:75,111:0,1:9,23:0,0
17	78674533	.	A	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1177|RPTOR|protein_coding|CODING|ENST00000544334|3|1),INTRON(MODIFIER||||1335|RPTOR|protein_coding|CODING|ENST00000306801|3|1),INTRON(MODIFIER||||329|RPTOR|protein_coding|CODING|ENST00000537330|2|1),INTRON(MODIFIER||||379|RPTOR|protein_coding|CODING|ENST00000570891|3|1),INTRON(MODIFIER|||||RPTOR|nonsense_mediated_decay|CODING|ENST00000574767|2|1),INTRON(MODIFIER|||||RPTOR|processed_transcript|CODING|ENST00000577161|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:9:5:0:30,56:0,1:0,2:0,0	112:23:26:0:79,156:0,0:10,20:0,1
17	78718105	rs200259698	A	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER||||1177|RPTOR|protein_coding|CODING|ENST00000544334|5|1),INTRON(MODIFIER||||1335|RPTOR|protein_coding|CODING|ENST00000306801|5|1),INTRON(MODIFIER||||329|RPTOR|protein_coding|CODING|ENST00000537330|4|1),INTRON(MODIFIER||||379|RPTOR|protein_coding|CODING|ENST00000570891|5|1),INTRON(MODIFIER|||||RPTOR|nonsense_mediated_decay|CODING|ENST00000574767|4|1),INTRON(MODIFIER|||||RPTOR|processed_transcript|CODING|ENST00000572733|2|1),INTRON(MODIFIER|||||RPTOR|processed_transcript|CODING|ENST00000575542|1|1),INTRON(MODIFIER|||||RPTOR|processed_transcript|CODING|ENST00000577161|5|1);RSPOS=78718105;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000080005000002000100;WGT=1;VC=SNV;INT;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	114:27:0:0:85,193:1,4:0,3:1,7	257:57:0:0:186,384:1,6:1,6:12,33
17	78718149	rs201486449	C	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1177|RPTOR|protein_coding|CODING|ENST00000544334|5|1),INTRON(MODIFIER||||1335|RPTOR|protein_coding|CODING|ENST00000306801|5|1),INTRON(MODIFIER||||329|RPTOR|protein_coding|CODING|ENST00000537330|4|1),INTRON(MODIFIER||||379|RPTOR|protein_coding|CODING|ENST00000570891|5|1),INTRON(MODIFIER|||||RPTOR|nonsense_mediated_decay|CODING|ENST00000574767|4|1),INTRON(MODIFIER|||||RPTOR|processed_transcript|CODING|ENST00000572733|2|1),INTRON(MODIFIER|||||RPTOR|processed_transcript|CODING|ENST00000575542|1|1),INTRON(MODIFIER|||||RPTOR|processed_transcript|CODING|ENST00000577161|5|1);RSPOS=78718149;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000080005000002000100;WGT=1;VC=SNV;INT;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	72:9:0:0:0,0:63,134:0,2:0,4	171:16:0:0:0,0:147,261:0,2:8,19
17	78718573	.	T	A	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1177|RPTOR|protein_coding|CODING|ENST00000544334|5|1),INTRON(MODIFIER||||1335|RPTOR|protein_coding|CODING|ENST00000306801|5|1),INTRON(MODIFIER||||329|RPTOR|protein_coding|CODING|ENST00000537330|4|1),INTRON(MODIFIER||||379|RPTOR|protein_coding|CODING|ENST00000570891|5|1),INTRON(MODIFIER|||||RPTOR|nonsense_mediated_decay|CODING|ENST00000574767|4|1),INTRON(MODIFIER|||||RPTOR|processed_transcript|CODING|ENST00000572733|2|1),INTRON(MODIFIER|||||RPTOR|processed_transcript|CODING|ENST00000575542|1|1),INTRON(MODIFIER|||||RPTOR|processed_transcript|CODING|ENST00000577161|5|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	48:10:0:0:0,0:0,1:0,1:38,77	116:27:0:0:9,30:0,6:1,2:79,156
17	79129964	rs77314075	T	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1374|AATK|protein_coding|CODING|ENST00000326724|1|1),INTRON(MODIFIER|||||AATK|nonsense_mediated_decay|CODING|ENST00000374792|1|1),INTRON(MODIFIER|||||AATK|processed_transcript|CODING|ENST00000572798|2|1);RSPOS=79129964;GMAF=0.0984;dbSNPBuildID=131;SSR=0;SAO=0;VP=05010008000503011e000100;GENEINFO=AATK:9625;WGT=1;VC=SNV;SLO;INT;ASP;G5A;G5;GNO;KGPhase1;KGPilot123;KGPROD;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	15:0:0:0:0,0:0,0:0,0:15,17	63:3:0:0:0,0:13,13:0,0:47,53
17	79453831	.	G	C	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:0:0:0:0,0:0,0:40,41:0,0	108:1:0:0:0,0:9,9:98,99:0,0
17	79621701	.	C	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||137|PDE6G|protein_coding|CODING|ENST00000573076|1|1),INTRON(MODIFIER||||70|PDE6G|protein_coding|CODING|ENST00000574024|1|1),INTRON(MODIFIER||||87|PDE6G|protein_coding|CODING|ENST00000331056|1|1),INTRON(MODIFIER||||87|PDE6G|protein_coding|CODING|ENST00000571224|1|1),INTRON(MODIFIER|||||PDE6G|processed_transcript|CODING|ENST00000574777|1|1),UPSTREAM(MODIFIER||||87|PDE6G|protein_coding|CODING|ENST00000571004||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:0:0:0:0,0:39,41:0,0:0,0	97:1:0:0:0,0:91,92:0,0:5,5
17	80106168	.	C	G	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||301|CCDC57|protein_coding|CODING|ENST00000324808|1|1),INTRON(MODIFIER||||352|CCDC57|protein_coding|CODING|ENST00000392346|1|1),INTRON(MODIFIER||||916|CCDC57|protein_coding|CODING|ENST00000389641|14|1),INTRON(MODIFIER||||916|CCDC57|protein_coding|CODING|ENST00000392347|14|1),INTRON(MODIFIER|||||CCDC57|processed_transcript|CODING|ENST00000582040|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	24:4:1:0:0,0:20,33:0,1:0,0	57:8:0:0:2,3:38,61:9,14:0,0
17	80249076	.	A	T	.	PASS	NT=ref;QSS=26;QSS_NT=26;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=EXON(MODIFIER|||||RP13-516M14.4|lincRNA|NON_CODING|ENST00000581489|2|1),UPSTREAM(MODIFIER|||||RP13-516M14.1|lincRNA|NON_CODING|ENST00000566986||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	54:1:0:0:53,54:0,0:0,0:0,0	91:1:0:0:84,85:0,0:0,0:6,6
17	80276933	.	G	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->GT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=DOWNSTREAM(MODIFIER||||145|SECTM1|protein_coding|CODING|ENST00000583093||1),DOWNSTREAM(MODIFIER||||149|SECTM1|protein_coding|CODING|ENST00000580437||1),DOWNSTREAM(MODIFIER||||169|SECTM1|protein_coding|CODING|ENST00000582563||1),DOWNSTREAM(MODIFIER||||177|SECTM1|protein_coding|CODING|ENST00000581691||1),DOWNSTREAM(MODIFIER||||248|SECTM1|protein_coding|CODING|ENST00000269389||1),DOWNSTREAM(MODIFIER|||||SECTM1|nonsense_mediated_decay|CODING|ENST00000581864||1),INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER||||121|CD7|protein_coding|CODING|ENST00000578509||1),UPSTREAM(MODIFIER||||140|CD7|protein_coding|CODING|ENST00000583376||1),UPSTREAM(MODIFIER||||159|CD7|protein_coding|CODING|ENST00000582480||1),UPSTREAM(MODIFIER||||221|CD7|protein_coding|CODING|ENST00000584284||1),UPSTREAM(MODIFIER||||240|CD7|protein_coding|CODING|ENST00000312648||1),UPSTREAM(MODIFIER|||||CD7|nonsense_mediated_decay|CODING|ENST00000581434||1),UPSTREAM(MODIFIER|||||CD7|retained_intron|CODING|ENST00000581744||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	46:1:0:0:0,0:2,2:43,44:0,1	124:8:0:0:0,0:2,3:102,114:12,13
17	80503732	.	A	G	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||660|FOXK2|protein_coding|CODING|ENST00000335255|1|1),INTRON(MODIFIER|||||FOXK2|nonsense_mediated_decay|CODING|ENST00000473637|1|1),INTRON(MODIFIER|||||FOXK2|retained_intron|CODING|ENST00000527313|1|1),INTRON(MODIFIER|||||FOXK2|retained_intron|CODING|ENST00000570585|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:0:0:0:31,31:0,0:0,0:0,0	115:0:0:0:109,109:0,0:6,6:0,0
17	80537342	.	G	A	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||RP13-638C3.2|sense_intronic|NON_CODING|ENST00000570869||1),INTRON(MODIFIER||||171|FOXK2|protein_coding|CODING|ENST00000531030|4|1),INTRON(MODIFIER||||252|FOXK2|protein_coding|CODING|ENST00000526383|4|1),INTRON(MODIFIER||||660|FOXK2|protein_coding|CODING|ENST00000335255|4|1),INTRON(MODIFIER|||||FOXK2|nonsense_mediated_decay|CODING|ENST00000473637|4|1),UPSTREAM(MODIFIER|||||FOXK2|processed_transcript|CODING|ENST00000571160||1),UPSTREAM(MODIFIER|||||RP13-638C3.6|processed_pseudogene|NON_CODING|ENST00000581815||1),UPSTREAM(MODIFIER|||||snoU13|snoRNA|NON_CODING|ENST00000459591||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:1:0:0:0,0:0,1:35,40:0,0	100:2:0:0:8,9:0,0:90,97:0,0
17	80766182	.	A	G	.	PASS	NT=ref;QSS=27;QSS_NT=27;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1192|TBCD|protein_coding|CODING|ENST00000355528|11|1),INTRON(MODIFIER||||1230|TBCD|protein_coding|CODING|ENST00000539345|11|1),INTRON(MODIFIER||||311|TBCD|protein_coding|CODING|ENST00000397466|11|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	54:0:0:0:54,58:0,0:0,0:0,0	88:1:0:0:77,92:0,0:10,12:0,0
17	81024886	rs76738174	G	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=81024886;GMAF=0.1145;dbSNPBuildID=131;SSR=0;SAO=0;VP=050000000001040116000100;WGT=1;VC=SNV;VLD;GNO;KGPhase1;KGPROD;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	51:2:0:0:0,0:0,0:49,54:0,0	103:5:0:0:5,5:0,0:93,104:0,1
18	21654	.	T	C	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||AP005530.2|lincRNA|NON_CODING|ENST00000572062||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	44:0:0:0:0,0:0,0:0,0:44,51	109:1:0:0:0,1:9,12:0,1:99,123
18	21655	.	G	A	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||AP005530.2|lincRNA|NON_CODING|ENST00000572062||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	44:0:0:0:0,0:0,0:44,51:0,0	109:1:0:0:9,12:0,0:99,124:0,1
18	21685	.	G	A	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||AP005530.2|lincRNA|NON_CODING|ENST00000572062||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	43:0:0:0:0,0:0,0:43,49:0,0	96:3:0:0:8,12:0,0:85,105:0,0
18	26190	.	A	G	.	PASS	NT=ref;QSS=24;QSS_NT=24;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	49:0:0:0:49,49:0,0:0,0:0,0	115:1:0:0:107,108:1,1:6,7:0,0
18	48338	.	G	A	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||RP11-683L23.2|processed_pseudogene|NON_CODING|ENST00000575066||1),DOWNSTREAM(MODIFIER|||||RP11-683L23.4|sense_overlapping|NON_CODING|ENST00000572530||1),DOWNSTREAM(MODIFIER|||||RP11-683L23.4|sense_overlapping|NON_CODING|ENST00000575325||1),SYNONYMOUS_CODING(LOW|SILENT|tgC/tgT|C129|444|RP11-683L23.1|protein_coding|CODING|ENST00000308911|4|1),SYNONYMOUS_CODING(LOW|SILENT|tgC/tgT|C95|410|RP11-683L23.1|protein_coding|CODING|ENST00000573909|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	50:0:0:0:1,1:0,0:49,56:0,0	102:1:0:0:13,16:1,1:87,96:0,0
18	123116	rs200109836	A	G	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||ROCK1P1|processed_transcript|NON_CODING|ENST00000576266||1),DOWNSTREAM(MODIFIER|||||ROCK1P1|transcribed_unprocessed_pseudogene|NON_CODING|ENST00000573767||1),INTERGENIC(MODIFIER||||||||||1);RSPOS=123116;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	15:0:0:0:15,16:0,0:0,0:0,0	37:0:0:0:28,31:0,0:9,9:0,0
18	347086	.	G	A	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=EXON(MODIFIER|||||COLEC12|retained_intron|CODING|ENST00000582147|5|1),NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|aCg/aTg|T179M|742|COLEC12|protein_coding|CODING|ENST00000400256|5|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:0:0:0:0,0:0,0:38,38:0,0	107:2:0:0:6,6:0,0:99,100:0,1
18	803500	.	T	G	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||543|YES1|protein_coding|CODING|ENST00000314574|1|1),INTRON(MODIFIER||||543|YES1|protein_coding|CODING|ENST00000584307|1|1),INTRON(MODIFIER|||||YES1|processed_transcript|CODING|ENST00000577611|1|1),INTRON(MODIFIER|||||YES1|processed_transcript|CODING|ENST00000581960|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	45:1:0:0:0,0:0,0:0,0:44,45	110:0:0:0:0,0:0,0:9,9:101,101
18	971977	.	G	A	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||RP11-78F17.1|lincRNA|NON_CODING|ENST00000577719||1),UPSTREAM(MODIFIER|||||RP11-78F17.1|lincRNA|NON_CODING|ENST00000579835||1),UPSTREAM(MODIFIER|||||RP11-78F17.1|lincRNA|NON_CODING|ENST00000580781||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:0:0:0:0,0:0,0:39,45:0,0	96:0:0:0:7,9:0,0:89,99:0,0
18	1629467	.	A	T	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=AA->AT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER|||||RP11-476K15.1|lincRNA|NON_CODING|ENST00000583163|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	54:1:1:0:53,66:0,0:0,0:0,0	204:3:7:0:194,255:0,0:0,0:7,10
18	2634186	.	A	G	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	41:0:0:0:41,42:0,0:0,0:0,0	98:1:0:0:93,94:0,0:4,5:0,0
18	3650834	.	C	T	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||627|DLGAP1|protein_coding|CODING|ENST00000400145|4|1),INTRON(MODIFIER||||661|DLGAP1|protein_coding|CODING|ENST00000534970|4|1),INTRON(MODIFIER||||667|DLGAP1|protein_coding|CODING|ENST00000400149|5|1),INTRON(MODIFIER||||675|DLGAP1|protein_coding|CODING|ENST00000400147|4|1),INTRON(MODIFIER||||683|DLGAP1|protein_coding|CODING|ENST00000400155|4|1),INTRON(MODIFIER||||683|DLGAP1|protein_coding|CODING|ENST00000581699|4|1),INTRON(MODIFIER||||685|DLGAP1|protein_coding|CODING|ENST00000539435|5|1),INTRON(MODIFIER||||693|DLGAP1|protein_coding|CODING|ENST00000400150|5|1),INTRON(MODIFIER||||929|DLGAP1|protein_coding|CODING|ENST00000515196|6|1),INTRON(MODIFIER||||929|DLGAP1|protein_coding|CODING|ENST00000581527|7|1),INTRON(MODIFIER||||977|DLGAP1|protein_coding|CODING|ENST00000315677|7|1),INTRON(MODIFIER||||977|DLGAP1|protein_coding|CODING|ENST00000584874|4|1),UPSTREAM(MODIFIER|||||RP11-874J12.4|antisense|NON_CODING|ENST00000577848||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	43:1:0:0:1,1:41,43:0,0:0,0	123:0:0:0:0,0:116,116:0,0:7,7
18	3650835	.	A	G	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||627|DLGAP1|protein_coding|CODING|ENST00000400145|4|1),INTRON(MODIFIER||||661|DLGAP1|protein_coding|CODING|ENST00000534970|4|1),INTRON(MODIFIER||||667|DLGAP1|protein_coding|CODING|ENST00000400149|5|1),INTRON(MODIFIER||||675|DLGAP1|protein_coding|CODING|ENST00000400147|4|1),INTRON(MODIFIER||||683|DLGAP1|protein_coding|CODING|ENST00000400155|4|1),INTRON(MODIFIER||||683|DLGAP1|protein_coding|CODING|ENST00000581699|4|1),INTRON(MODIFIER||||685|DLGAP1|protein_coding|CODING|ENST00000539435|5|1),INTRON(MODIFIER||||693|DLGAP1|protein_coding|CODING|ENST00000400150|5|1),INTRON(MODIFIER||||929|DLGAP1|protein_coding|CODING|ENST00000515196|6|1),INTRON(MODIFIER||||929|DLGAP1|protein_coding|CODING|ENST00000581527|7|1),INTRON(MODIFIER||||977|DLGAP1|protein_coding|CODING|ENST00000315677|7|1),INTRON(MODIFIER||||977|DLGAP1|protein_coding|CODING|ENST00000584874|4|1),UPSTREAM(MODIFIER|||||RP11-874J12.4|antisense|NON_CODING|ENST00000577848||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	43:1:0:0:42,43:0,1:0,0:0,0	123:0:0:0:113,113:0,0:10,10:0,0
18	3650864	.	G	C	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||627|DLGAP1|protein_coding|CODING|ENST00000400145|4|1),INTRON(MODIFIER||||661|DLGAP1|protein_coding|CODING|ENST00000534970|4|1),INTRON(MODIFIER||||667|DLGAP1|protein_coding|CODING|ENST00000400149|5|1),INTRON(MODIFIER||||675|DLGAP1|protein_coding|CODING|ENST00000400147|4|1),INTRON(MODIFIER||||683|DLGAP1|protein_coding|CODING|ENST00000400155|4|1),INTRON(MODIFIER||||683|DLGAP1|protein_coding|CODING|ENST00000581699|4|1),INTRON(MODIFIER||||685|DLGAP1|protein_coding|CODING|ENST00000539435|5|1),INTRON(MODIFIER||||693|DLGAP1|protein_coding|CODING|ENST00000400150|5|1),INTRON(MODIFIER||||929|DLGAP1|protein_coding|CODING|ENST00000515196|6|1),INTRON(MODIFIER||||929|DLGAP1|protein_coding|CODING|ENST00000581527|7|1),INTRON(MODIFIER||||977|DLGAP1|protein_coding|CODING|ENST00000315677|7|1),INTRON(MODIFIER||||977|DLGAP1|protein_coding|CODING|ENST00000584874|4|1),UPSTREAM(MODIFIER|||||RP11-874J12.4|antisense|NON_CODING|ENST00000577848||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	41:1:0:0:0,1:0,0:40,41:0,0	115:1:0:0:0,0:7,7:107,108:0,0
18	4513955	.	C	G	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:0:0:0:0,0:36,36:0,0:0,0	106:1:0:0:0,0:93,93:12,12:0,1
18	4801637	.	C	A	.	PASS	NT=ref;QSS=23;QSS_NT=23;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-172F10.1|lincRNA|NON_CODING|ENST00000585028|4|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	46:0:0:0:0,0:46,46:0,0:0,0	94:1:0:0:9,10:84,84:0,0:0,0
18	5878373	.	G	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||RP11-945C19.1|lincRNA|NON_CODING|ENST00000562452||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:0:0:0:0,0:0,0:40,40:0,0	97:1:0:0:4,4:0,0:92,93:0,0
18	6544308	.	C	T	.	PASS	NT=ref;QSS=24;QSS_NT=24;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||135|RP11-865B13.1|protein_coding|CODING|ENST00000584361|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	76:0:0:0:0,0:74,82:1,1:1,1	231:2:0:0:1,1:216,240:0,0:12,14
18	6798253	rs112989929	C	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||116|ARHGAP28|protein_coding|CODING|ENST00000532723|2|1),INTRON(MODIFIER||||136|ARHGAP28|protein_coding|CODING|ENST00000584387|1|1),INTRON(MODIFIER||||670|ARHGAP28|protein_coding|CODING|ENST00000262227|1|1),INTRON(MODIFIER||||722|ARHGAP28|protein_coding|CODING|ENST00000400091|1|1),INTRON(MODIFIER||||729|ARHGAP28|protein_coding|CODING|ENST00000383472|1|1),INTRON(MODIFIER||||72|ARHGAP28|protein_coding|CODING|ENST00000583410|2|1);RSPOS=6798253;GMAF=0.0156;dbSNPBuildID=132;SSR=0;SAO=0;VP=050100000001070116000100;WGT=1;VC=SNV;SLO;VLD;G5A;G5;GNO;KGPhase1;KGPROD;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:0:0:0:0,0:29,31:0,0:0,0	100:3:0:0:0,0:86,89:0,0:11,11
18	7085573	.	A	G	.	PASS	NT=ref;QSS=23;QSS_NT=23;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||3075|LAMA1|protein_coding|CODING|ENST00000389658|1|1),INTRON(MODIFIER|||||LAMA1|retained_intron|CODING|ENST00000579014|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	47:1:0:0:46,49:0,0:0,0:0,0	107:2:0:0:94,94:1,1:10,12:0,0
18	8647293	.	G	A	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	45:2:0:0:0,0:0,0:43,45:0,0	114:0:0:0:7,7:0,0:107,107:0,0
18	9587674	.	G	A	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||134|PPP4R1|protein_coding|CODING|ENST00000580745||1),DOWNSTREAM(MODIFIER||||142|PPP4R1|protein_coding|CODING|ENST00000581250||1),DOWNSTREAM(MODIFIER||||150|PPP4R1|protein_coding|CODING|ENST00000584074||1),DOWNSTREAM(MODIFIER||||189|PPP4R1|protein_coding|CODING|ENST00000582240||1),DOWNSTREAM(MODIFIER||||96|PPP4R1|protein_coding|CODING|ENST00000581835||1),DOWNSTREAM(MODIFIER|||||PPP4R1|nonsense_mediated_decay|CODING|ENST00000580182||1),DOWNSTREAM(MODIFIER|||||PPP4R1|nonsense_mediated_decay|CODING|ENST00000583092||1),DOWNSTREAM(MODIFIER|||||PPP4R1|processed_transcript|CODING|ENST00000578178||1),DOWNSTREAM(MODIFIER|||||PPP4R1|processed_transcript|CODING|ENST00000579415||1),DOWNSTREAM(MODIFIER|||||PPP4R1|processed_transcript|CODING|ENST00000579638||1),DOWNSTREAM(MODIFIER|||||PPP4R1|processed_transcript|CODING|ENST00000582933||1),DOWNSTREAM(MODIFIER|||||PPP4R1|processed_transcript|CODING|ENST00000583903||1),INTRON(MODIFIER||||933|PPP4R1|protein_coding|CODING|ENST00000400555|6|1),INTRON(MODIFIER||||950|PPP4R1|protein_coding|CODING|ENST00000400556|6|1),INTRON(MODIFIER|||||PPP4R1|nonsense_mediated_decay|CODING|ENST00000285124|5|1),INTRON(MODIFIER|||||PPP4R1|nonsense_mediated_decay|CODING|ENST00000578875|5|1),INTRON(MODIFIER|||||PPP4R1|processed_transcript|CODING|ENST00000580583|4|1),INTRON(MODIFIER|||||RP11-881L2.1|antisense|NON_CODING|ENST00000584109|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:0:0:0:0,0:0,0:39,41:0,0	104:5:0:0:6,6:0,0:92,97:1,1
18	10271416	.	G	A	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	45:0:0:0:0,0:0,0:45,45:0,0	99:0:0:0:7,7:0,0:92,92:0,0
18	11596517	.	C	A	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:0:0:0:0,0:34,34:0,0:0,0	91:0:0:0:7,8:84,85:0,0:0,0
18	12715192	.	G	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||240|PSMG2|protein_coding|CODING|ENST00000590217|3|1),INTRON(MODIFIER||||264|PSMG2|protein_coding|CODING|ENST00000317615|3|1),INTRON(MODIFIER|||||PSMG2|nonsense_mediated_decay|CODING|ENST00000586587|3|1),INTRON(MODIFIER|||||RP11-973H7.2|processed_transcript|NON_CODING|ENST00000585331|3|1),INTRON(MODIFIER|||||RP11-973H7.2|processed_transcript|NON_CODING|ENST00000586445|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:0:0:0:0,0:0,0:29,30:0,0	94:0:0:0:7,7:0,0:87,91:0,0
18	14223435	.	G	A	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||ANKRD20A5P|processed_transcript|NON_CODING|ENST00000580995||1),DOWNSTREAM(MODIFIER|||||ANKRD20A5P|processed_transcript|NON_CODING|ENST00000583348||1),DOWNSTREAM(MODIFIER|||||RHOT1P1|processed_pseudogene|NON_CODING|ENST00000582468||1),INTRON(MODIFIER|||||ANKRD20A5P|transcribed_unprocessed_pseudogene|NON_CODING|ENST00000431648|15|1),UPSTREAM(MODIFIER|||||ANKRD20A5P|processed_transcript|NON_CODING|ENST00000577614||1),UPSTREAM(MODIFIER|||||ANKRD20A5P|unprocessed_pseudogene|NON_CODING|ENST00000427989||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	59:6:0:0:1,1:0,1:51,61:1,1	95:11:0:0:8,8:2,2:74,91:0,1
18	14224406	rs9789120	A	G	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||ANKRD20A5P|processed_transcript|NON_CODING|ENST00000580995||1),DOWNSTREAM(MODIFIER|||||ANKRD20A5P|processed_transcript|NON_CODING|ENST00000583348||1),DOWNSTREAM(MODIFIER|||||RHOT1P1|processed_pseudogene|NON_CODING|ENST00000582468||1),INTRON(MODIFIER|||||ANKRD20A5P|transcribed_unprocessed_pseudogene|NON_CODING|ENST00000431648|15|1),UPSTREAM(MODIFIER|||||ANKRD20A5P|processed_transcript|NON_CODING|ENST00000577614||1),UPSTREAM(MODIFIER|||||ANKRD20A5P|unprocessed_pseudogene|NON_CODING|ENST00000427989||1);RSPOS=14224406;GMAF=0.4116;dbSNPBuildID=119;SSR=0;SAO=0;VP=050000080001040016000100;GENEINFO=ANKRD20A5P:440482;WGT=1;VC=SNV;INT;VLD;KGPhase1;KGPROD;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	24:4:0:0:18,34:2,3:0,2:0,0	48:7:0:0:30,35:1,1:9,13:1,1
18	14229431	.	C	G	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=CC->CG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=DOWNSTREAM(MODIFIER|||||ANKRD20A5P|transcribed_unprocessed_pseudogene|NON_CODING|ENST00000431648||1),INTRON(MODIFIER|||||ANKRD20A5P|processed_transcript|NON_CODING|ENST00000577614|2|1),INTRON(MODIFIER|||||ANKRD20A5P|unprocessed_pseudogene|NON_CODING|ENST00000427989|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	49:0:0:0:0,0:49,50:0,1:0,0	128:1:0:0:1,1:115,119:9,10:2,2
18	14244753	rs185521309	C	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=EXON(MODIFIER|||||ANKRD20A5P|unprocessed_pseudogene|NON_CODING|ENST00000427989|6|1),EXON(MODIFIER|||||RP11-757O6.1|lincRNA|NON_CODING|ENST00000580200|1|1);RSPOS=14244753;dbSNPBuildID=135;SSR=0;SAO=0;VP=050000000305000002000100;GENEINFO=LOC100652806:100652806;WGT=1;VC=SNV;REF;SYN;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:1:0:0:0,0:39,40:0,0:0,0	104:0:0:0:0,0:99,100:0,0:5,7
18	14257756	rs201933222	C	T	.	PASS	NT=ref;QSS=24;QSS_NT=24;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=14257756;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	48:0:0:0:0,0:48,51:0,0:0,1	113:0:0:0:0,0:101,102:0,0:12,17
18	15164079	.	A	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=AA->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER|||||RP11-805F19.1|processed_transcript|NON_CODING|ENST00000581690|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	69:0:0:0:69,77:0,0:0,0:0,0	211:2:0:0:201,237:0,1:8,9:0,0
18	15170814	.	T	A	.	PASS	NT=ref;QSS=31;QSS_NT=31;SGT=TT->AT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	67:0:0:0:0,1:0,0:0,0:67,77	185:4:0:0:7,15:0,0:0,0:174,204
18	15176549	.	C	A	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=CC->AC;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	49:0:0:0:0,2:48,56:1,1:0,0	183:0:0:0:9,12:172,190:2,3:0,1
18	15178096	.	A	G	.	PASS	NT=ref;QSS=25;QSS_NT=25;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	49:0:0:0:49,57:0,1:0,0:0,0	148:3:0:0:136,171:0,1:9,13:0,0
18	15183101	.	A	G	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:0:0:0:36,36:0,0:0,0:0,0	131:4:0:0:119,125:0,0:8,10:0,0
18	15183472	.	T	G	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:0:0:0:0,0:0,0:0,0:37,39	101:2:0:0:0,0:0,0:8,10:91,96
18	15204836	rs193051648	T	A	.	PASS	NT=ref;QSS=33;QSS_NT=33;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=15204836;dbSNPBuildID=135;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	71:4:0:0:0,1:0,0:0,1:67,126	188:24:0:0:8,30:0,1:0,0:156,312
18	15223145	rs112139706	T	G	.	PASS	NT=ref;QSS=38;QSS_NT=38;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=15223145;dbSNPBuildID=132;SSR=0;SAO=0;VP=050100000001000102000100;WGT=1;VC=SNV;SLO;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	90:8:0:0:0,0:0,0:0,1:82,111	200:9:0:0:0,0:0,0:7,23:184,251
18	15264215	.	A	G	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-454P7.1|unprocessed_pseudogene|NON_CODING|ENST00000545779|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:0:0:0:34,34:1,1:0,0:0,0	105:0:0:0:99,99:0,0:6,7:0,0
18	15268081	.	T	G	.	PASS	NT=ref;QSS=25;QSS_NT=25;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-454P7.1|unprocessed_pseudogene|NON_CODING|ENST00000545779|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	51:0:0:0:0,0:0,0:0,0:51,51	115:2:0:0:0,0:0,0:8,10:105,107
18	15317304	.	G	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||U6|snRNA|NON_CODING|ENST00000410155||1),INTRON(MODIFIER|||||AP005901.1|processed_transcript|NON_CODING|ENST00000455308|5|1),INTRON(MODIFIER|||||AP005901.1|processed_transcript|NON_CODING|ENST00000504516|4|1),INTRON(MODIFIER|||||AP005901.1|transcribed_unprocessed_pseudogene|NON_CODING|ENST00000508721|6|1),INTRON(MODIFIER|||||AP005901.1|unprocessed_pseudogene|NON_CODING|ENST00000333851|6|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:0:0:0:0,0:0,0:35,37:0,0	145:2:0:0:0,0:1,1:134,140:8,9
18	15323189	rs200222651	T	C	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||AP005901.1|processed_transcript|NON_CODING|ENST00000455308|4|1),INTRON(MODIFIER|||||AP005901.1|processed_transcript|NON_CODING|ENST00000504516|3|1),INTRON(MODIFIER|||||AP005901.1|transcribed_unprocessed_pseudogene|NON_CODING|ENST00000508721|4|1),INTRON(MODIFIER|||||AP005901.1|unprocessed_pseudogene|NON_CODING|ENST00000333851|4|1),UPSTREAM(MODIFIER|||||U6|snRNA|NON_CODING|ENST00000410155||1);RSPOS=15323189;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000080005000002000100;WGT=1;VC=SNV;INT;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	42:1:0:0:0,0:0,0:0,0:41,44	140:2:0:0:0,0:10,18:0,0:128,143
18	15349592	rs10445443	C	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=15349592;dbSNPBuildID=119;SSR=0;SAO=0;VP=050000000001040002000100;WGT=1;VC=SNV;VLD;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:0:0:0:0,0:38,39:0,0:0,0	97:1:0:0:0,0:91,94:0,0:5,8
18	15394572	.	T	C	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	79:3:0:0:0,0:1,1:0,0:75,79	213:3:0:0:0,0:10,19:2,2:198,200
18	18512667	rs79214000	G	C	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->CG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=18512667;dbSNPBuildID=131;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	74:15:0:0:0,0:1,2:58,81:0,0	170:31:0:0:0,0:6,11:133,185:0,1
18	18524230	.	C	T	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||RP11-666N19.1|sense_overlapping|NON_CODING|ENST00000564351||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:0:0:0:0,0:36,37:0,0:0,0	108:5:0:0:1,1:92,93:0,1:10,13
18	19268412	.	T	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||MIR320C1|miRNA|NON_CODING|ENST00000408566||1),INTRON(MODIFIER||||214|ABHD3|protein_coding|CODING|ENST00000578270|2|1),INTRON(MODIFIER||||356|ABHD3|protein_coding|CODING|ENST00000580981|3|1),INTRON(MODIFIER||||409|ABHD3|protein_coding|CODING|ENST00000289119|3|1),INTRON(MODIFIER|||||ABHD3|nonsense_mediated_decay|CODING|ENST00000577891|3|1),INTRON(MODIFIER|||||ABHD3|processed_transcript|CODING|ENST00000579875|3|1),INTRON(MODIFIER|||||ABHD3|retained_intron|CODING|ENST00000577928|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:1:0:0:0,0:0,0:0,0:39,41	107:2:0:0:4,5:0,0:0,0:101,103
18	19466413	.	T	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=TT->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER|||||RP11-268I9.3|lincRNA|NON_CODING|ENST00000583436|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	49:1:0:0:0,0:0,2:0,0:48,57	121:1:0:0:0,0:7,10:0,0:113,120
18	19466451	.	C	T	.	PASS	NT=ref;QSS=23;QSS_NT=23;SGT=CC->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER|||||RP11-268I9.3|lincRNA|NON_CODING|ENST00000583436|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	49:0:0:0:0,0:49,53:0,0:0,1	106:1:0:0:0,0:98,104:0,0:7,10
18	20186657	.	G	T	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	44:0:0:0:0,0:0,0:44,44:0,0	106:0:0:0:1,1:0,0:98,99:7,7
18	22583078	.	T	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	28:0:0:0:0,0:0,0:0,0:28,28	95:1:0:0:0,0:6,6:0,0:88,89
18	24431786	.	C	T	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||301|AQP4|protein_coding|CODING|ENST00000440832||1),DOWNSTREAM(MODIFIER||||301|AQP4|protein_coding|CODING|ENST00000581374||1),DOWNSTREAM(MODIFIER||||323|AQP4|protein_coding|CODING|ENST00000383168||1),DOWNSTREAM(MODIFIER|||||AQP4|processed_transcript|CODING|ENST00000583022||1),INTRON(MODIFIER|||||CHST9-AS1|antisense|NON_CODING|ENST00000579964|1|1),INTRON(MODIFIER|||||CHST9-AS1|antisense|NON_CODING|ENST00000582605|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:1:0:0:0,0:35,36:0,0:0,0	98:0:0:0:0,0:87,88:0,0:11,11
18	26243862	.	C	G	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:0:0:0:0,0:32,32:0,0:0,0	94:0:0:0:0,0:84,84:10,10:0,0
18	26436463	.	G	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:0:0:0:0,0:0,0:30,30:0,0	111:0:0:0:0,0:7,7:103,103:1,1
18	27621009	.	A	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:0:0:0:30,31:0,0:0,0:0,0	90:0:0:0:84,84:0,0:6,6:0,0
18	27717624	.	C	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:0:0:0:0,0:37,37:0,0:0,0	91:0:0:0:0,0:86,86:0,0:5,7
18	28076204	.	C	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:0:0:0:0,0:30,30:0,0:0,0	98:0:0:0:0,0:93,94:5,5:0,0
18	33918427	rs146993890	C	T	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1401|FHOD3|protein_coding|CODING|ENST00000445677|1|1),INTRON(MODIFIER||||1422|FHOD3|protein_coding|CODING|ENST00000359247|1|1),INTRON(MODIFIER||||1439|FHOD3|protein_coding|CODING|ENST00000257209|1|1),INTRON(MODIFIER||||1622|FHOD3|protein_coding|CODING|ENST00000590592|1|1),INTRON(MODIFIER|||||FHOD3|retained_intron|CODING|ENST00000589114|1|1);RSPOS=33918427;GMAF=0.0009;dbSNPBuildID=134;SSR=0;SAO=0;VP=050000080005000014000100;GENEINFO=FHOD3:80206;WGT=1;VC=SNV;INT;ASP;KGPhase1;KGPROD	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:0:0:0:0,0:39,39:0,0:0,0	96:0:0:0:0,0:90,90:0,0:6,6
18	35023275	.	A	G	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||153|CELF4|protein_coding|CODING|ENST00000587819|2|1),INTRON(MODIFIER||||161|CELF4|protein_coding|CODING|ENST00000589229|2|1),INTRON(MODIFIER||||448|CELF4|protein_coding|CODING|ENST00000334919|2|1),INTRON(MODIFIER||||454|CELF4|protein_coding|CODING|ENST00000588597|2|1),INTRON(MODIFIER||||484|CELF4|protein_coding|CODING|ENST00000420428|2|1),INTRON(MODIFIER||||484|CELF4|protein_coding|CODING|ENST00000591287|2|1),INTRON(MODIFIER||||485|CELF4|protein_coding|CODING|ENST00000412753|2|1),INTRON(MODIFIER||||486|CELF4|protein_coding|CODING|ENST00000361795|2|1),INTRON(MODIFIER||||486|CELF4|protein_coding|CODING|ENST00000591282|2|1),INTRON(MODIFIER||||66|CELF4|protein_coding|CODING|ENST00000587924|2|1),INTRON(MODIFIER|||||CELF4|nonsense_mediated_decay|CODING|ENST00000590112|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:0:0:0:34,34:0,0:0,0:0,0	91:1:0:0:78,79:0,0:12,12:0,0
18	35490389	.	G	A	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:0:0:0:0,0:0,0:37,37:0,0	100:0:0:0:9,9:0,0:91,91:0,0
18	36054558	.	A	C	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:0:0:0:38,38:0,0:0,0:0,0	91:0:0:0:87,89:4,4:0,0:0,0
18	37375169	rs187557449	G	A	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||LINC00669|lincRNA|NON_CODING|ENST00000591629|1|1);RSPOS=37375169;GMAF=0.0073;dbSNPBuildID=135;SSR=0;SAO=0;VP=050000000005000014000100;WGT=1;VC=SNV;ASP;KGPhase1;KGPROD	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	41:0:0:0:0,0:0,0:41,41:0,0	110:1:0:0:9,9:0,0:100,101:0,0
18	38290931	.	C	T	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:0:0:0:0,0:39,40:0,0:0,0	101:1:0:0:0,1:89,89:0,0:11,11
18	38458031	.	G	T	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:0:0:0:0,0:1,1:38,39:0,0	115:3:0:0:0,1:0,0:106,108:6,6
18	38614978	.	C	A	.	PASS	NT=ref;QSS=23;QSS_NT=23;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	45:0:0:0:0,0:45,45:0,0:0,0	84:0:0:0:6,6:78,79:0,0:0,0
18	39393871	.	T	C	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:0:0:0:0,0:0,0:0,0:39,39	88:1:0:0:0,0:4,4:0,0:83,84
18	40388087	.	G	A	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||153|RIT2|protein_coding|CODING|ENST00000589109|5|1),INTRON(MODIFIER||||169|RIT2|protein_coding|CODING|ENST00000590910|5|1),INTRON(MODIFIER||||217|RIT2|protein_coding|CODING|ENST00000326695|4|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:0:0:0:0,0:0,0:36,36:0,0	109:1:0:0:8,9:0,0:100,100:0,0
18	40678857	.	A	T	.	PASS	NT=ref;QSS=25;QSS_NT=25;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||153|RIT2|protein_coding|CODING|ENST00000282028|1|1),INTRON(MODIFIER||||153|RIT2|protein_coding|CODING|ENST00000589109|1|1),INTRON(MODIFIER||||169|RIT2|protein_coding|CODING|ENST00000590910|1|1),INTRON(MODIFIER||||217|RIT2|protein_coding|CODING|ENST00000326695|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	49:0:0:0:49,49:0,0:0,0:0,0	91:0:0:0:80,80:0,0:1,1:10,10
18	41603510	.	C	G	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->CG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	41:0:0:0:0,0:41,42:0,1:0,0	83:1:0:0:0,0:75,76:7,9:0,0
18	41603560	.	C	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:0:0:0:0,0:36,36:0,0:0,1	93:1:0:0:0,0:86,87:0,0:6,8
18	41603579	.	A	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=AA->AC;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:0:0:0:35,36:0,1:1,1:0,0	88:1:0:0:82,83:5,7:0,0:0,0
18	41603596	.	C	A	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=CC->AC;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	43:0:0:0:0,1:43,44:0,0:0,0	86:0:0:0:6,8:80,80:0,0:0,0
18	41603617	.	A	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	44:1:0:0:43,45:0,0:0,0:0,1	85:0:0:0:81,81:0,0:0,0:4,6
18	41603621	.	G	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	45:1:0:0:0,0:0,0:44,46:0,1	82:0:0:0:0,0:0,0:78,78:4,6
18	41603623	.	T	A	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	46:1:0:0:0,1:0,0:0,0:45,47	83:0:0:0:4,6:0,0:0,0:79,79
18	43342744	.	T	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:0:0:0:0,0:0,0:0,0:32,32	115:1:0:0:0,0:11,11:0,1:103,104
18	44089050	.	T	C	.	PASS	NT=ref;QSS=23;QSS_NT=23;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||56|LOXHD1|protein_coding|CODING|ENST00000452425||1),DOWNSTREAM(MODIFIER|||||LOXHD1|retained_intron|CODING|ENST00000335730||1),INTRON(MODIFIER||||1011|LOXHD1|protein_coding|CODING|ENST00000579038|15|1),INTRON(MODIFIER||||1100|LOXHD1|protein_coding|CODING|ENST00000582408|15|1),INTRON(MODIFIER||||1114|LOXHD1|protein_coding|CODING|ENST00000300591|17|1),INTRON(MODIFIER||||1144|LOXHD1|protein_coding|CODING|ENST00000441893|15|1),INTRON(MODIFIER||||179|LOXHD1|protein_coding|CODING|ENST00000414184|3|1),INTRON(MODIFIER||||1947|LOXHD1|protein_coding|CODING|ENST00000398722|28|1),INTRON(MODIFIER||||2067|LOXHD1|protein_coding|CODING|ENST00000441551|33|1),INTRON(MODIFIER||||2211|LOXHD1|protein_coding|CODING|ENST00000536736|34|1),INTRON(MODIFIER||||457|LOXHD1|protein_coding|CODING|ENST00000398705|3|1),INTRON(MODIFIER||||512|LOXHD1|protein_coding|CODING|ENST00000398686|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	44:0:0:0:0,0:0,0:0,0:44,44	94:1:0:0:0,0:9,9:0,0:84,86
18	47246653	.	T	C	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	42:0:0:0:0,0:0,1:0,0:42,42	101:1:0:0:0,0:10,22:0,0:90,91
18	47944230	.	T	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:0:0:0:0,0:0,0:0,0:38,38	83:7:0:0:0,0:4,5:0,0:72,79
18	49162509	.	C	A	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:0:0:0:0,0:36,36:0,0:0,0	115:2:0:0:9,9:104,106:0,0:0,0
18	50394455	rs12957965	G	A	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1447|DCC|protein_coding|CODING|ENST00000442544|2|1),INTRON(MODIFIER||||897|DCC|protein_coding|CODING|ENST00000412726|1|1),INTRON(MODIFIER|||||DCC|nonsense_mediated_decay|CODING|ENST00000581559|1|1),INTRON(MODIFIER|||||DCC|processed_transcript|CODING|ENST00000580024|2|1);RSPOS=50394455;dbSNPBuildID=121;SSR=0;SAO=0;VP=050000080005000002000100;GENEINFO=DCC:1630;WGT=1;VC=SNV;INT;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:0:0:0:0,0:0,0:39,39:0,0	101:2:0:0:7,8:0,0:92,92:0,1
18	51978752	.	A	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:0:0:0:33,33:0,0:0,0:0,0	97:1:0:0:89,89:7,7:0,0:0,1
18	52513375	.	A	T	.	PASS	NT=ref;QSS=23;QSS_NT=23;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||218|RAB27B|protein_coding|CODING|ENST00000262094|1|1),INTRON(MODIFIER||||86|RAB27B|protein_coding|CODING|ENST00000586570|2|1),INTRON(MODIFIER|||||RAB27B|processed_transcript|CODING|ENST00000586594|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	47:1:0:0:46,47:0,0:0,0:0,0	136:2:0:0:125,127:0,0:0,0:9,9
18	54995302	.	A	G	.	PASS	NT=ref;QSS=27;QSS_NT=27;SGT=AA->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:2:0:0:33,36:0,0:0,1:0,0	97:4:0:0:72,81:0,1:21,22:0,0
18	58350083	.	C	A	.	PASS	NT=ref;QSS=28;QSS_NT=28;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-325K19.1|lincRNA|NON_CODING|ENST00000591869|5|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	56:0:0:0:0,0:56,56:0,0:0,0	114:3:0:0:7,8:104,106:0,0:0,0
18	58618838	.	T	A	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:0:0:0:0,0:0,0:0,0:39,39	97:1:0:0:7,8:0,0:0,0:89,89
18	60262872	.	T	G	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:0:0:0:0,0:0,0:0,0:35,35	95:0:0:0:0,0:0,0:8,8:87,87
18	61518867	.	T	G	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:1:0:0:0,0:0,0:0,0:36,37	79:1:0:0:0,0:0,0:5,5:73,74
18	61704074	.	C	T	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	42:1:0:0:0,0:41,42:0,0:0,0	92:0:0:0:0,0:87,88:0,0:5,5
18	61843392	.	C	T	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-146N18.1|lincRNA|NON_CODING|ENST00000589376|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:0:0:0:0,0:39,39:0,0:0,0	112:1:0:0:0,0:105,106:0,0:6,6
18	64199756	.	C	G	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||490|CDH19|protein_coding|CODING|ENST00000540086|8|1),INTRON(MODIFIER||||772|CDH19|protein_coding|CODING|ENST00000262150|8|1),INTRON(MODIFIER|||||CDH19|nonsense_mediated_decay|CODING|ENST00000579658|8|1),UTR_3_PRIME(MODIFIER||||434|CDH19|protein_coding|CODING|ENST00000454642|8|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:0:0:0:1,1:32,33:0,0:0,0	96:1:0:0:1,1:83,84:11,12:0,0
18	64617730	.	T	A	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||U6|snRNA|NON_CODING|ENST00000459571||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:0:0:0:0,0:0,0:0,0:39,39	99:0:0:0:9,9:0,0:0,0:90,90
18	66979438	.	A	C	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	42:0:0:0:42,42:0,0:0,0:0,0	91:2:0:0:79,81:10,10:0,0:0,0
18	67679914	.	G	A	.	PASS	NT=ref;QSS=26;QSS_NT=26;SGT=GG->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=DOWNSTREAM(MODIFIER|||||RTTN|processed_transcript|CODING|ENST00000579021||1),DOWNSTREAM(MODIFIER|||||RTTN|processed_transcript|CODING|ENST00000579986||1),INTRON(MODIFIER||||2226|RTTN|protein_coding|CODING|ENST00000255674|46|1),INTRON(MODIFIER||||879|RTTN|protein_coding|CODING|ENST00000454359|45|1),INTRON(MODIFIER|||||RTTN|nonsense_mediated_decay|CODING|ENST00000581161|45|1),INTRON(MODIFIER|||||RTTN|nonsense_mediated_decay|CODING|ENST00000583043|40|1),INTRON(MODIFIER|||||RTTN|retained_intron|CODING|ENST00000580034|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	56:0:0:0:0,1:0,0:55,57:1,1	115:1:0:0:6,6:0,0:108,113:0,0
18	69071037	.	C	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:0:0:0:0,0:36,36:0,0:0,0	99:2:0:0:0,1:93,95:0,0:4,4
18	69293076	.	T	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:0:0:0:0,0:0,0:0,0:30,30	95:0:0:0:0,0:7,7:0,0:88,88
18	70367724	.	T	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:3:0:0:0,0:0,0:0,0:33,38	121:3:6:0:0,1:8,9:0,0:110,124
18	70562582	.	T	C	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:0:0:0:0,0:0,0:0,0:35,35	97:2:0:0:0,1:8,8:0,0:87,88
18	71647261	.	C	A	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-25L3.3|lincRNA|NON_CODING|ENST00000581541|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:1:0:0:0,0:36,38:0,0:0,0	94:1:0:0:6,6:87,88:0,0:0,0
18	72181754	rs201997964	T	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||137|CNDP2|protein_coding|CODING|ENST00000579583||1),DOWNSTREAM(MODIFIER||||203|CNDP2|protein_coding|CODING|ENST00000580672||1),DOWNSTREAM(MODIFIER||||248|CNDP2|protein_coding|CODING|ENST00000583785||1),DOWNSTREAM(MODIFIER|||||CNDP2|processed_transcript|CODING|ENST00000577669||1),DOWNSTREAM(MODIFIER|||||CNDP2|processed_transcript|CODING|ENST00000582620||1),DOWNSTREAM(MODIFIER|||||CNDP2|retained_intron|CODING|ENST00000583938||1),DOWNSTREAM(MODIFIER|||||CNDP2|retained_intron|CODING|ENST00000585263||1),INTRON(MODIFIER||||109|CNDP2|protein_coding|CODING|ENST00000579624|2|1),INTRON(MODIFIER||||391|CNDP2|protein_coding|CODING|ENST00000324301|5|1),INTRON(MODIFIER||||475|CNDP2|protein_coding|CODING|ENST00000324262|8|1),INTRON(MODIFIER||||475|CNDP2|protein_coding|CODING|ENST00000579847|8|1),INTRON(MODIFIER|||||CNDP2|processed_transcript|CODING|ENST00000583695|3|1),INTRON(MODIFIER|||||CNDP2|retained_intron|CODING|ENST00000581600|1|1),INTRON(MODIFIER|||||CNDP2|retained_intron|CODING|ENST00000584581|4|1),UPSTREAM(MODIFIER|||||CNDP2|retained_intron|CODING|ENST00000577409||1);RSPOS=72181754;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000080015000002000100;WGT=1;VC=SNV;INT;OTH;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	15:0:0:0:0,0:0,0:0,0:15,15	55:4:0:0:0,0:0,0:10,15:41,42
18	72816808	.	T	C	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	59:1:0:0:0,0:1,1:0,0:57,63	123:1:0:0:0,0:8,8:0,0:114,123
18	74415862	.	G	T	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=GG->GT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=EXON(MODIFIER|||||ARL2BPP1|processed_pseudogene|NON_CODING|ENST00000584870|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	57:0:0:0:0,0:0,0:57,57:0,0	100:1:0:0:0,0:0,0:94,96:5,5
18	76477383	.	T	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=TT->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	43:1:0:0:0,0:0,1:0,0:42,42	78:5:0:0:0,0:11,12:0,2:62,65
18	76527310	.	A	G	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:0:0:0:38,38:0,0:0,0:0,0	102:2:0:0:92,94:0,0:8,8:0,0
18	76547624	.	C	T	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=CC->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	55:3:1:0:0,0:52,58:0,1:0,1	114:5:0:0:0,0:104,115:0,0:5,6
18	76591941	.	T	C	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	52:1:0:0:0,0:1,1:0,0:50,54	102:4:0:0:0,0:8,9:0,0:90,97
18	76611083	.	T	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	28:2:0:0:0,0:0,0:0,0:26,28	98:7:0:0:2,2:0,1:13,16:76,83
18	76724961	.	C	G	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:1:0:0:0,0:38,43:0,0:0,0	107:10:0:0:0,0:89,105:8,10:0,0
18	76724999	rs12969403	C	G	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=76724999;dbSNPBuildID=121;SSR=0;SAO=0;VP=050000000001040102000100;WGT=1;VC=SNV;VLD;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:5:0:0:0,0:33,41:0,0:0,0	67:9:0:0:0,0:51,66:7,9:0,0
18	77005831	rs113992511	C	T	.	PASS	NT=ref;QSS=25;QSS_NT=25;SGT=CC->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER||||1136|ATP9B|protein_coding|CODING|ENST00000307671|11|1),INTRON(MODIFIER||||1147|ATP9B|protein_coding|CODING|ENST00000426216|11|1),INTRON(MODIFIER|||||ATP9B|nonsense_mediated_decay|CODING|ENST00000586366|9|1),INTRON(MODIFIER|||||ATP9B|retained_intron|CODING|ENST00000490210|9|1),INTRON(MODIFIER|||||ATP9B|retained_intron|CODING|ENST00000585674|2|1),INTRON(MODIFIER|||||ATP9B|retained_intron|CODING|ENST00000590271|12|1);RSPOS=77005831;dbSNPBuildID=132;SSR=0;SAO=0;VP=050000080005000102000100;GENEINFO=ATP9B:374868;WGT=1;VC=SNV;INT;ASP;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:2:0:0:0,0:36,40:1,1:0,1	108:8:0:0:0,0:81,88:2,3:17,19
18	77005848	rs113000288	C	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->AC;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER||||1136|ATP9B|protein_coding|CODING|ENST00000307671|11|1),INTRON(MODIFIER||||1147|ATP9B|protein_coding|CODING|ENST00000426216|11|1),INTRON(MODIFIER|||||ATP9B|nonsense_mediated_decay|CODING|ENST00000586366|9|1),INTRON(MODIFIER|||||ATP9B|retained_intron|CODING|ENST00000490210|9|1),INTRON(MODIFIER|||||ATP9B|retained_intron|CODING|ENST00000585674|2|1),INTRON(MODIFIER|||||ATP9B|retained_intron|CODING|ENST00000590271|12|1);RSPOS=77005848;dbSNPBuildID=132;SSR=0;SAO=0;VP=050000080001040102000100;GENEINFO=ATP9B:374868;WGT=1;VC=SNV;INT;VLD;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:5:0:0:0,1:34,41:0,0:0,0	92:13:0:0:5,12:74,84:0,0:0,0
18	77228857	.	T	G	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||639|NFATC1|protein_coding|CODING|ENST00000587635||1),DOWNSTREAM(MODIFIER||||703|NFATC1|protein_coding|CODING|ENST00000592223||1),DOWNSTREAM(MODIFIER||||716|NFATC1|protein_coding|CODING|ENST00000591814||1),INTRON(MODIFIER||||353|NFATC1|protein_coding|CODING|ENST00000397790|7|1),INTRON(MODIFIER||||471|NFATC1|protein_coding|CODING|ENST00000545796|7|1),INTRON(MODIFIER||||700|NFATC1|protein_coding|CODING|ENST00000586434|8|1),INTRON(MODIFIER||||713|NFATC1|protein_coding|CODING|ENST00000542384|8|1),INTRON(MODIFIER||||812|NFATC1|protein_coding|CODING|ENST00000318065|8|1),INTRON(MODIFIER||||825|NFATC1|protein_coding|CODING|ENST00000253506|8|1),INTRON(MODIFIER||||930|NFATC1|protein_coding|CODING|ENST00000329101|8|1),INTRON(MODIFIER||||943|NFATC1|protein_coding|CODING|ENST00000427363|8|1),INTRON(MODIFIER|||||NFATC1|nonsense_mediated_decay|CODING|ENST00000590313|7|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:1:0:0:0,0:1,1:0,0:33,36	97:1:0:0:0,0:0,0:7,7:89,90
18	77234054	.	A	G	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=AA->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER||||353|NFATC1|protein_coding|CODING|ENST00000397790|7|1),INTRON(MODIFIER||||471|NFATC1|protein_coding|CODING|ENST00000545796|7|1),INTRON(MODIFIER||||700|NFATC1|protein_coding|CODING|ENST00000586434|8|1),INTRON(MODIFIER||||713|NFATC1|protein_coding|CODING|ENST00000542384|8|1),INTRON(MODIFIER||||812|NFATC1|protein_coding|CODING|ENST00000318065|8|1),INTRON(MODIFIER||||825|NFATC1|protein_coding|CODING|ENST00000253506|8|1),INTRON(MODIFIER||||930|NFATC1|protein_coding|CODING|ENST00000329101|8|1),INTRON(MODIFIER||||943|NFATC1|protein_coding|CODING|ENST00000427363|8|1),INTRON(MODIFIER|||||NFATC1|nonsense_mediated_decay|CODING|ENST00000590313|7|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	56:1:0:0:54,56:1,1:0,1:0,0	70:10:0:0:52,64:0,0:8,10:0,0
18	77234447	.	G	A	.	PASS	NT=ref;QSS=23;QSS_NT=23;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||353|NFATC1|protein_coding|CODING|ENST00000397790|7|1),INTRON(MODIFIER||||471|NFATC1|protein_coding|CODING|ENST00000545796|7|1),INTRON(MODIFIER||||700|NFATC1|protein_coding|CODING|ENST00000586434|8|1),INTRON(MODIFIER||||713|NFATC1|protein_coding|CODING|ENST00000542384|8|1),INTRON(MODIFIER||||812|NFATC1|protein_coding|CODING|ENST00000318065|8|1),INTRON(MODIFIER||||825|NFATC1|protein_coding|CODING|ENST00000253506|8|1),INTRON(MODIFIER||||930|NFATC1|protein_coding|CODING|ENST00000329101|8|1),INTRON(MODIFIER||||943|NFATC1|protein_coding|CODING|ENST00000427363|8|1),INTRON(MODIFIER|||||NFATC1|nonsense_mediated_decay|CODING|ENST00000590313|7|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	50:5:0:0:0,0:0,0:45,53:0,0	89:3:0:0:7,7:1,1:78,82:0,0
18	77235249	.	C	T	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||353|NFATC1|protein_coding|CODING|ENST00000397790|7|1),INTRON(MODIFIER||||471|NFATC1|protein_coding|CODING|ENST00000545796|7|1),INTRON(MODIFIER||||700|NFATC1|protein_coding|CODING|ENST00000586434|8|1),INTRON(MODIFIER||||713|NFATC1|protein_coding|CODING|ENST00000542384|8|1),INTRON(MODIFIER||||812|NFATC1|protein_coding|CODING|ENST00000318065|8|1),INTRON(MODIFIER||||825|NFATC1|protein_coding|CODING|ENST00000253506|8|1),INTRON(MODIFIER||||930|NFATC1|protein_coding|CODING|ENST00000329101|8|1),INTRON(MODIFIER||||943|NFATC1|protein_coding|CODING|ENST00000427363|8|1),INTRON(MODIFIER|||||NFATC1|nonsense_mediated_decay|CODING|ENST00000590313|7|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	57:4:0:0:0,0:52,56:0,0:1,1	123:8:0:0:0,0:105,115:0,1:10,10
18	77454642	.	A	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||77|CTDP1|protein_coding|CODING|ENST00000590635|2|1),INTRON(MODIFIER||||799|CTDP1|protein_coding|CODING|ENST00000591598|1|1),INTRON(MODIFIER||||867|CTDP1|protein_coding|CODING|ENST00000075430|1|1),INTRON(MODIFIER||||961|CTDP1|protein_coding|CODING|ENST00000299543|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:1:0:0:34,34:2,3:1,1:0,0	114:4:0:0:99,99:3,6:1,2:7,8
19	255842	.	C	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	45:0:0:0:0,0:44,44:0,0:1,2	86:1:0:0:1,1:68,70:0,0:16,22
19	312141	rs61710650	A	G	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||545|MIER2|protein_coding|CODING|ENST00000264819|9|1),INTRON(MODIFIER|||||CTD-3113P16.5|antisense|NON_CODING|ENST00000589092|1|1);RSPOS=312141;GMAF=0.1708;dbSNPBuildID=129;SSR=0;SAO=0;VP=050000080001040016000100;GENEINFO=MIER2:54531;WGT=1;VC=SNV;INT;VLD;KGPhase1;KGPROD;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	43:2:0:0:40,41:0,1:0,0:1,1	90:2:0:0:77,78:2,3:9,10:0,0
19	434161	rs138872457	A	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||SHC2|processed_transcript|CODING|ENST00000590113||1),DOWNSTREAM(MODIFIER|||||SHC2|retained_intron|CODING|ENST00000591388||1),INTRON(MODIFIER||||582|SHC2|protein_coding|CODING|ENST00000264554|8|1),INTRON(MODIFIER|||||SHC2|nonsense_mediated_decay|CODING|ENST00000590170|2|1),INTRON(MODIFIER|||||SHC2|processed_transcript|CODING|ENST00000591948|2|1),INTRON(MODIFIER|||||SHC2|retained_intron|CODING|ENST00000589922|6|1);RSPOS=434161;GMAF=0.1058;dbSNPBuildID=134;SSR=0;SAO=0;VP=050000080005000016000100;GENEINFO=SHC2:25759;WGT=1;VC=SNV;INT;ASP;KGPhase1;KGPROD;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:3:0:0:28,34:0,0:0,0:0,0	98:7:0:0:82,98:9,10:0,0:0,0
19	451042	rs111459717	A	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||582|SHC2|protein_coding|CODING|ENST00000264554|1|1),UPSTREAM(MODIFIER|||||RNA5SP462|rRNA|NON_CODING|ENST00000516730||1);RSPOS=451042;dbSNPBuildID=132;SSR=0;SAO=0;VP=050000080001000102000100;GENEINFO=SHC2:25759;WGT=1;VC=SNV;INT;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	45:0:0:0:43,46:1,1:1,2:0,0	104:8:0:0:80,86:1,1:14,19:1,1
19	545639	rs28666917	G	A	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||236|CDC34|protein_coding|CODING|ENST00000215574||1),DOWNSTREAM(MODIFIER|||||CDC34|processed_transcript|CODING|ENST00000593036||1),DOWNSTREAM(MODIFIER|||||CDC34|retained_intron|CODING|ENST00000586283||1),INTRON(MODIFIER||||257|GZMM|protein_coding|CODING|ENST00000264553|1|1),INTRON(MODIFIER|||||GZMM|processed_transcript|CODING|ENST00000592501|1|1);RSPOS=545639;GMAF=0.0765;dbSNPBuildID=125;SSR=0;SAO=0;VP=050000080009040116000100;GENEINFO=GZMM:3004;WGT=1;VC=SNV;INT;CFL;VLD;GNO;KGPhase1;KGPROD;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:0:0:0:0,0:1,1:39,39:0,0	97:1:0:0:8,8:0,0:88,93:0,0
19	649875	.	T	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->AT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=DOWNSTREAM(MODIFIER|||||RNF126|retained_intron|CODING|ENST00000591356||1),DOWNSTREAM(MODIFIER|||||RNF126|retained_intron|CODING|ENST00000591394||1),DOWNSTREAM(MODIFIER|||||RNF126|retained_intron|CODING|ENST00000592626||1),INTRON(MODIFIER||||158|RNF126|protein_coding|CODING|ENST00000592418|5|1),INTRON(MODIFIER||||164|RNF126|protein_coding|CODING|ENST00000589762|5|1),INTRON(MODIFIER||||311|RNF126|protein_coding|CODING|ENST00000292363|5|1),INTRON(MODIFIER|||||RNF126|retained_intron|CODING|ENST00000586749|1|1),INTRON(MODIFIER|||||RNF126|retained_intron|CODING|ENST00000590885|2|1),UPSTREAM(MODIFIER|||||RNF126|retained_intron|CODING|ENST00000591452||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:2:0:0:0,1:0,0:1,2:37,38	95:9:0:0:8,9:0,1:4,6:74,87
19	944061	.	T	C	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||181|ARID3A|protein_coding|CODING|ENST00000587532|1|1),INTRON(MODIFIER||||593|ARID3A|protein_coding|CODING|ENST00000263620|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:1:0:0:0,0:0,0:0,0:37,38	72:1:0:0:0,1:7,7:0,0:64,65
19	946073	rs183861409	C	T	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||181|ARID3A|protein_coding|CODING|ENST00000587532|1|1),INTRON(MODIFIER||||593|ARID3A|protein_coding|CODING|ENST00000263620|3|1);RSPOS=946073;GMAF=0.0005;dbSNPBuildID=135;SSR=0;SAO=0;VP=050000080005000014000100;GENEINFO=ARID3A:1820;WGT=1;VC=SNV;INT;ASP;KGPhase1;KGPROD	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	45:1:0:0:0,0:44,45:0,0:0,0	92:0:0:0:0,0:87,87:0,0:5,5
19	1142235	.	C	T	.	PASS	NT=ref;QSS=38;QSS_NT=38;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||110|SBNO2|protein_coding|CODING|ENST00000587655|4|1),INTRON(MODIFIER||||127|SBNO2|protein_coding|CODING|ENST00000590176|4|1),INTRON(MODIFIER||||127|SBNO2|protein_coding|CODING|ENST00000590998|4|1),INTRON(MODIFIER||||1356|SBNO2|protein_coding|CODING|ENST00000587024|4|1),INTRON(MODIFIER||||1366|SBNO2|protein_coding|CODING|ENST00000361757|4|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	113:33:0:0:0,0:80,154:0,0:0,1	243:64:0:0:0,0:169,301:0,0:10,15
19	1247096	rs182253939	A	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||168|ATP5D|protein_coding|CODING|ENST00000215375||1),DOWNSTREAM(MODIFIER||||168|ATP5D|protein_coding|CODING|ENST00000395633||1),DOWNSTREAM(MODIFIER||||168|ATP5D|protein_coding|CODING|ENST00000591660||1),DOWNSTREAM(MODIFIER|||||ATP5D|retained_intron|CODING|ENST00000588538||1),DOWNSTREAM(MODIFIER|||||ATP5D|retained_intron|CODING|ENST00000589478||1),DOWNSTREAM(MODIFIER|||||ATP5D|retained_intron|CODING|ENST00000590265||1),DOWNSTREAM(MODIFIER|||||ATP5D|retained_intron|CODING|ENST00000591249||1),DOWNSTREAM(MODIFIER|||||ATP5D|retained_intron|CODING|ENST00000592624||1),INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER||||127|MIDN|protein_coding|CODING|ENST00000586757||1),UPSTREAM(MODIFIER||||468|MIDN|protein_coding|CODING|ENST00000300952||1),UPSTREAM(MODIFIER||||468|MIDN|protein_coding|CODING|ENST00000591446||1),UPSTREAM(MODIFIER|||||MIDN|retained_intron|CODING|ENST00000591302||1);RSPOS=1247096;GMAF=0.0334;dbSNPBuildID=135;SSR=0;SAO=0;VP=050000000005000014000100;WGT=1;VC=SNV;ASP;KGPhase1;KGPROD	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	47:1:0:0:45,46:0,0:1,1:0,1	94:2:0:0:84,87:0,0:8,9:0,0
19	1419785	.	A	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=AA->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=DOWNSTREAM(MODIFIER|||||DAZAP1|processed_transcript|CODING|ENST00000590419||1),INTRON(MODIFIER||||224|DAZAP1|protein_coding|CODING|ENST00000592453|3|1),INTRON(MODIFIER||||378|DAZAP1|protein_coding|CODING|ENST00000336761|4|1),INTRON(MODIFIER||||407|DAZAP1|protein_coding|CODING|ENST00000233078|4|1),INTRON(MODIFIER|||||DAZAP1|nonsense_mediated_decay|CODING|ENST00000592522|5|1),INTRON(MODIFIER|||||DAZAP1|processed_transcript|CODING|ENST00000586579|4|1),INTRON(MODIFIER|||||DAZAP1|processed_transcript|CODING|ENST00000587833|4|1),INTRON(MODIFIER|||||DAZAP1|retained_intron|CODING|ENST00000589484|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:1:0:0:33,33:0,0:0,1:0,0	92:1:0:0:79,85:0,0:12,17:0,0
19	1420390	rs3207744	G	T	.	PASS	NT=ref;QSS=23;QSS_NT=23;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||DAZAP1|processed_transcript|CODING|ENST00000590419||1),INTRON(MODIFIER||||224|DAZAP1|protein_coding|CODING|ENST00000592453|3|1),INTRON(MODIFIER||||378|DAZAP1|protein_coding|CODING|ENST00000336761|4|1),INTRON(MODIFIER||||407|DAZAP1|protein_coding|CODING|ENST00000233078|4|1),INTRON(MODIFIER|||||DAZAP1|nonsense_mediated_decay|CODING|ENST00000592522|5|1),INTRON(MODIFIER|||||DAZAP1|processed_transcript|CODING|ENST00000586579|4|1),INTRON(MODIFIER|||||DAZAP1|processed_transcript|CODING|ENST00000587833|4|1),INTRON(MODIFIER|||||DAZAP1|retained_intron|CODING|ENST00000589484|3|1);RSPOS=1420390;dbSNPBuildID=105;SSR=0;SAO=0;VP=050000080001000002000100;GENEINFO=DAZAP1:26528;WGT=1;VC=SNV;INT;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	51:5:0:0:0,1:0,0:46,53:0,0	103:7:0:0:0,1:3,3:87,102:6,7
19	1420393	.	C	A	.	PASS	NT=ref;QSS=23;QSS_NT=23;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||DAZAP1|processed_transcript|CODING|ENST00000590419||1),INTRON(MODIFIER||||224|DAZAP1|protein_coding|CODING|ENST00000592453|3|1),INTRON(MODIFIER||||378|DAZAP1|protein_coding|CODING|ENST00000336761|4|1),INTRON(MODIFIER||||407|DAZAP1|protein_coding|CODING|ENST00000233078|4|1),INTRON(MODIFIER|||||DAZAP1|nonsense_mediated_decay|CODING|ENST00000592522|5|1),INTRON(MODIFIER|||||DAZAP1|processed_transcript|CODING|ENST00000586579|4|1),INTRON(MODIFIER|||||DAZAP1|processed_transcript|CODING|ENST00000587833|4|1),INTRON(MODIFIER|||||DAZAP1|retained_intron|CODING|ENST00000589484|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	53:4:0:0:0,0:49,56:0,0:0,0	104:7:0:0:5,6:92,104:0,0:0,2
19	1910905	.	T	C	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||SCAMP4|retained_intron|CODING|ENST00000588555||1),INTRON(MODIFIER||||122|SCAMP4|protein_coding|CODING|ENST00000411971|1|1),INTRON(MODIFIER||||195|SCAMP4|protein_coding|CODING|ENST00000409472|1|1),INTRON(MODIFIER||||229|SCAMP4|protein_coding|CODING|ENST00000316097|1|1),INTRON(MODIFIER||||351|ADAT3|protein_coding|CODING|ENST00000329478|1|1),INTRON(MODIFIER||||52|ADAT3|protein_coding|CODING|ENST00000454697|1|1),INTRON(MODIFIER|||||SCAMP4|processed_transcript|CODING|ENST00000414057|1|1),INTRON(MODIFIER|||||SCAMP4|processed_transcript|CODING|ENST00000460767|1|1),INTRON(MODIFIER|||||SCAMP4|processed_transcript|CODING|ENST00000489554|1|1),INTRON(MODIFIER|||||SCAMP4|processed_transcript|CODING|ENST00000588907|1|1),INTRON(MODIFIER|||||SCAMP4|retained_intron|CODING|ENST00000452128|1|1),UPSTREAM(MODIFIER||||44|SCAMP4|protein_coding|CODING|ENST00000590266||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:0:0:0:0,0:0,0:0,0:36,36	102:3:0:0:0,0:6,6:0,0:93,97
19	1946811	.	T	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER||||415|CSNK1G2|protein_coding|CODING|ENST00000255641|1|1),INTRON(MODIFIER||||76|CSNK1G2|protein_coding|CODING|ENST00000591752|1|1),INTRON(MODIFIER|||||CSNK1G2|processed_transcript|CODING|ENST00000587123|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	45:1:0:0:0,0:0,1:0,0:44,44	91:2:0:0:0,0:7,7:0,0:82,90
19	2037047	rs112740754	A	G	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=DOWNSTREAM(MODIFIER||||129|MKNK2|protein_coding|CODING|ENST00000588014||1),DOWNSTREAM(MODIFIER||||129|MKNK2|protein_coding|CODING|ENST00000591588||1),DOWNSTREAM(MODIFIER||||158|MKNK2|protein_coding|CODING|ENST00000591142||1),DOWNSTREAM(MODIFIER||||174|MKNK2|protein_coding|CODING|ENST00000589441||1),DOWNSTREAM(MODIFIER||||334|MKNK2|protein_coding|CODING|ENST00000541165||1),DOWNSTREAM(MODIFIER||||414|MKNK2|protein_coding|CODING|ENST00000309340||1),DOWNSTREAM(MODIFIER||||465|MKNK2|protein_coding|CODING|ENST00000250896||1),DOWNSTREAM(MODIFIER||||465|MKNK2|protein_coding|CODING|ENST00000591601||1),DOWNSTREAM(MODIFIER|||||MKNK2|nonsense_mediated_decay|CODING|ENST00000586828||1),DOWNSTREAM(MODIFIER|||||MKNK2|retained_intron|CODING|ENST00000585667||1),DOWNSTREAM(MODIFIER|||||MKNK2|retained_intron|CODING|ENST00000586620||1),DOWNSTREAM(MODIFIER|||||MKNK2|retained_intron|CODING|ENST00000587416||1),INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||BTBD2|processed_transcript|CODING|ENST00000587742||1),UPSTREAM(MODIFIER|||||BTBD2|processed_transcript|CODING|ENST00000588395||1),UPSTREAM(MODIFIER|||||BTBD2|processed_transcript|CODING|ENST00000590646||1);RSPOS=2037047;dbSNPBuildID=132;SSR=0;SAO=0;VP=050000040001040102000100;GENEINFO=MKNK2:2872;WGT=1;VC=SNV;R3;VLD;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	26:1:0:0:24,37:1,1:0,1:0,0	51:0:0:0:41,66:0,0:9,11:1,1
19	2201174	.	G	T	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||207|DOT1L|protein_coding|CODING|ENST00000452696||1),INTRON(MODIFIER||||1537|DOT1L|protein_coding|CODING|ENST00000398665|8|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:6:0:0:0,0:1,1:23,33:0,0	62:6:0:0:0,0:0,1:46,64:10,11
19	2308828	.	T	C	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER||||592|LINGO3|protein_coding|CODING|ENST00000404279||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:3:0:0:0,0:0,0:0,1:34,37	87:8:0:0:0,1:5,8:0,0:74,78
19	2308866	.	G	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER||||592|LINGO3|protein_coding|CODING|ENST00000404279||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:2:0:0:0,0:0,0:29,32:0,0	85:2:0:0:0,0:0,0:77,79:6,6
19	2432665	.	A	G	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||LMNB2|processed_transcript|CODING|ENST00000527409||1),DOWNSTREAM(MODIFIER|||||LMNB2|processed_transcript|CODING|ENST00000534495||1),INTRON(MODIFIER||||600|LMNB2|protein_coding|CODING|ENST00000582871|8|1),INTRON(MODIFIER||||620|LMNB2|protein_coding|CODING|ENST00000325327|8|1),INTRON(MODIFIER|||||LMNB2|processed_transcript|CODING|ENST00000532465|1|1),INTRON(MODIFIER|||||LMNB2|retained_intron|CODING|ENST00000490554|3|1),UPSTREAM(MODIFIER||||95|TIMM13|protein_coding|CODING|ENST00000215570||1),UPSTREAM(MODIFIER|||||LMNB2|processed_transcript|CODING|ENST00000475819||1),UPSTREAM(MODIFIER|||||LMNB2|processed_transcript|CODING|ENST00000524597||1),UPSTREAM(MODIFIER|||||LMNB2|processed_transcript|CODING|ENST00000534597||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	49:5:0:0:42,48:1,2:1,1:0,0	98:12:0:0:78,94:2,3:6,8:0,0
19	2761703	rs138283612	G	A	.	PASS	NT=ref;QSS=23;QSS_NT=23;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||161|SGTA|protein_coding|CODING|ENST00000589251||1),INTRON(MODIFIER||||313|SGTA|protein_coding|CODING|ENST00000221566|7|1),UPSTREAM(MODIFIER|||||SGTA|retained_intron|CODING|ENST00000591984||1);RSPOS=2761703;GMAF=0.0417;dbSNPBuildID=134;SSR=0;SAO=0;VP=050000080005000014000100;GENEINFO=SGTA:6449;WGT=1;VC=SNV;INT;ASP;KGPhase1;KGPROD	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	46:0:0:0:0,0:0,0:46,46:0,0	79:2:0:0:7,7:1,1:69,76:0,0
19	3861391	.	G	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||68|ZFR2|protein_coding|CODING|ENST00000592398|1|1),INTRON(MODIFIER||||70|ZFR2|protein_coding|CODING|ENST00000439086|1|1),INTRON(MODIFIER||||939|ZFR2|protein_coding|CODING|ENST00000262961|1|1),INTRON(MODIFIER|||||ZFR2|nonsense_mediated_decay|CODING|ENST00000438164|1|1),INTRON(MODIFIER|||||ZFR2|nonsense_mediated_decay|CODING|ENST00000587212|1|1),INTRON(MODIFIER|||||ZFR2|processed_transcript|CODING|ENST00000591965|1|1),INTRON(MODIFIER|||||ZFR2|retained_intron|CODING|ENST00000592807|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:0:0:0:0,0:0,0:33,33:0,0	85:4:0:0:5,5:0,0:76,81:0,0
19	3920957	.	G	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||371|ATCAY|protein_coding|CODING|ENST00000450849|12|1),INTRON(MODIFIER||||377|ATCAY|protein_coding|CODING|ENST00000301260|12|1),INTRON(MODIFIER||||377|ATCAY|protein_coding|CODING|ENST00000398448|13|1),UPSTREAM(MODIFIER|||||Metazoa_SRP|misc_RNA|NON_CODING|ENST00000584410||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	53:0:0:0:0,0:1,1:52,52:0,0	86:0:0:0:4,4:0,0:82,82:0,0
19	4039288	.	G	A	.	PASS	NT=ref;QSS=28;QSS_NT=28;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||137|AC016586.1|protein_coding|CODING|ENST00000535853||1),UTR_3_PRIME(MODIFIER||||510|PIAS4|protein_coding|CODING|ENST00000262971|11|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	56:0:0:0:0,0:0,0:56,56:0,0	117:0:0:0:13,13:0,0:104,104:0,0
19	5020216	.	A	G	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1096|KDM4B|protein_coding|CODING|ENST00000159111|2|1),INTRON(MODIFIER||||1130|KDM4B|protein_coding|CODING|ENST00000536461|1|1),INTRON(MODIFIER||||119|KDM4B|protein_coding|CODING|ENST00000588337|1|1),INTRON(MODIFIER||||448|KDM4B|protein_coding|CODING|ENST00000381759|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	50:2:0:0:47,48:0,0:1,2:0,0	106:13:0:0:82,87:0,0:11,20:0,0
19	5976123	.	A	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||121|RANBP3|protein_coding|CODING|ENST00000592621|1|1),INTRON(MODIFIER||||138|RANBP3|protein_coding|CODING|ENST00000591333|1|1),INTRON(MODIFIER||||154|RANBP3|protein_coding|CODING|ENST00000587479|1|1),INTRON(MODIFIER||||170|RANBP3|protein_coding|CODING|ENST00000591736|1|1),INTRON(MODIFIER||||173|RANBP3|protein_coding|CODING|ENST00000587159|1|1),INTRON(MODIFIER||||439|RANBP3|protein_coding|CODING|ENST00000541471|1|1),INTRON(MODIFIER||||494|RANBP3|protein_coding|CODING|ENST00000591092|1|1),INTRON(MODIFIER||||499|RANBP3|protein_coding|CODING|ENST00000034275|1|1),INTRON(MODIFIER||||50|RANBP3|protein_coding|CODING|ENST00000590623|1|1),INTRON(MODIFIER||||562|RANBP3|protein_coding|CODING|ENST00000439268|1|1),INTRON(MODIFIER||||567|RANBP3|protein_coding|CODING|ENST00000340578|1|1),INTRON(MODIFIER|||||RANBP3|nonsense_mediated_decay|CODING|ENST00000585339|2|1),INTRON(MODIFIER|||||RANBP3|nonsense_mediated_decay|CODING|ENST00000587263|1|1),INTRON(MODIFIER|||||RANBP3|nonsense_mediated_decay|CODING|ENST00000587463|1|1),INTRON(MODIFIER|||||RANBP3|nonsense_mediated_decay|CODING|ENST00000588010|1|1),INTRON(MODIFIER|||||RANBP3|nonsense_mediated_decay|CODING|ENST00000589353|1|1),INTRON(MODIFIER|||||RANBP3|nonsense_mediated_decay|CODING|ENST00000592133|1|1),INTRON(MODIFIER|||||RANBP3|nonsense_mediated_decay|CODING|ENST00000592771|1|1),INTRON(MODIFIER|||||RANBP3|processed_transcript|CODING|ENST00000586117|1|1),INTRON(MODIFIER|||||RANBP3|processed_transcript|CODING|ENST00000587956|1|1),INTRON(MODIFIER|||||RANBP3|processed_transcript|CODING|ENST00000588879|1|1),INTRON(MODIFIER|||||RANBP3|processed_transcript|CODING|ENST00000589886|1|1),INTRON(MODIFIER|||||RANBP3|processed_transcript|CODING|ENST00000590953|1|1),INTRON(MODIFIER|||||RANBP3|processed_transcript|CODING|ENST00000591124|2|1),INTRON(MODIFIER|||||RANBP3|processed_transcript|CODING|ENST00000591881|1|1),INTRON(MODIFIER|||||RANBP3|retained_intron|CODING|ENST00000592266|1|1),UPSTREAM(MODIFIER|||||CTC-232P5.1|antisense|NON_CODING|ENST00000587836||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:0:0:0:30,31:0,0:0,0:0,0	87:1:0:0:79,80:0,0:7,7:0,0
19	5989616	.	T	C	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||698|RFX2|protein_coding|CODING|ENST00000592546||1),DOWNSTREAM(MODIFIER||||723|RFX2|protein_coding|CODING|ENST00000303657||1),DOWNSTREAM(MODIFIER||||723|RFX2|protein_coding|CODING|ENST00000359161||1),INTRON(MODIFIER|||||CTC-232P5.1|antisense|NON_CODING|ENST00000587836|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:0:0:0:0,0:0,0:0,0:38,38	99:0:0:0:0,0:6,6:0,0:93,93
19	6102123	rs150744303	C	T	.	PASS	NT=ref;QSS=23;QSS_NT=23;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||109|RFX2|protein_coding|CODING|ENST00000592473|1|1),INTRON(MODIFIER||||141|RFX2|protein_coding|CODING|ENST00000592883|2|1),INTRON(MODIFIER||||146|RFX2|protein_coding|CODING|ENST00000586806|1|1),INTRON(MODIFIER||||168|RFX2|protein_coding|CODING|ENST00000586302|1|1),INTRON(MODIFIER||||32|RFX2|protein_coding|CODING|ENST00000587321|1|1),INTRON(MODIFIER||||698|RFX2|protein_coding|CODING|ENST00000592546|1|1),INTRON(MODIFIER||||723|RFX2|protein_coding|CODING|ENST00000303657|1|1),INTRON(MODIFIER||||92|RFX2|protein_coding|CODING|ENST00000593241|1|1),INTRON(MODIFIER||||97|RFX2|protein_coding|CODING|ENST00000589742|1|1),INTRON(MODIFIER||||98|RFX2|protein_coding|CODING|ENST00000587181|1|1),INTRON(MODIFIER|||||RFX2|processed_transcript|CODING|ENST00000586940|1|1),INTRON(MODIFIER|||||RFX2|processed_transcript|CODING|ENST00000590822|1|1),INTRON(MODIFIER|||||RFX2|processed_transcript|CODING|ENST00000592172|1|1);RSPOS=6102123;GMAF=0.0014;dbSNPBuildID=134;SSR=0;SAO=0;VP=050000080005000014000100;GENEINFO=RFX2:5990;WGT=1;VC=SNV;INT;ASP;KGPhase1;KGPROD	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	45:0:0:0:0,0:45,45:0,0:0,0	98:0:0:0:0,0:91,91:0,0:7,7
19	6330235	.	A	G	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||264|ACER1|protein_coding|CODING|ENST00000301452|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	44:1:0:0:43,47:0,0:0,0:0,0	97:0:0:0:90,91:1,1:6,6:0,0
19	8236041	.	T	C	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	50:2:0:0:0,0:0,0:0,0:48,50	116:3:0:0:1,1:8,8:0,0:104,110
19	8788138	.	C	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||AC092566.1|processed_pseudogene|NON_CODING|ENST00000570582||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:2:0:0:0,0:31,35:0,0:0,0	84:1:1:0:0,0:76,79:0,0:7,7
19	9406712	.	A	G	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=DOWNSTREAM(MODIFIER|||||CTC-325H20.4|antisense|NON_CODING|ENST00000591336||1),SYNONYMOUS_CODING(LOW|SILENT|ttT/ttC|F456|642|ZNF699|protein_coding|CODING|ENST00000308650|5|1),SYNONYMOUS_CODING(LOW|SILENT|ttT/ttC|F456|642|ZNF699|protein_coding|CODING|ENST00000591998|6|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	49:0:0:0:49,49:0,0:0,0:0,0	99:1:0:0:94,95:0,0:4,4:0,0
19	9664330	.	C	T	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	44:0:0:0:0,0:44,44:0,0:0,0	126:0:0:0:0,0:118,118:0,0:8,8
19	10701583	rs115427865	G	A	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER||||238|AP1M2|protein_coding|CODING|ENST00000589684||1),UPSTREAM(MODIFIER||||244|AP1M2|protein_coding|CODING|ENST00000591240||1),UPSTREAM(MODIFIER||||298|AP1M2|protein_coding|CODING|ENST00000591676||1),UPSTREAM(MODIFIER||||423|AP1M2|protein_coding|CODING|ENST00000250244||1),UPSTREAM(MODIFIER||||425|AP1M2|protein_coding|CODING|ENST00000590923||1),UPSTREAM(MODIFIER|||||AP1M2|nonsense_mediated_decay|CODING|ENST00000589571||1),UPSTREAM(MODIFIER|||||AP1M2|retained_intron|CODING|ENST00000589809||1);RSPOS=10701583;GMAF=0.011;dbSNPBuildID=132;SSR=0;SAO=0;VP=050000000005040014000100;WGT=1;VC=SNV;ASP;VLD;KGPhase1;KGPROD	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:0:0:0:0,0:0,0:37,37:0,0	114:1:0:0:7,7:0,0:106,109:0,0
19	12938406	.	G	A	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||112|RTBDN|protein_coding|CODING|ENST00000587549||1),DOWNSTREAM(MODIFIER||||69|RTBDN|protein_coding|CODING|ENST00000591512||1),INTRON(MODIFIER||||129|RTBDN|protein_coding|CODING|ENST00000589567|4|1),INTRON(MODIFIER||||173|RTBDN|protein_coding|CODING|ENST00000585384|4|1),INTRON(MODIFIER||||185|RTBDN|protein_coding|CODING|ENST00000589808|4|1),INTRON(MODIFIER||||189|RTBDN|protein_coding|CODING|ENST00000590404|4|1),INTRON(MODIFIER||||192|RTBDN|protein_coding|CODING|ENST00000589681|4|1),INTRON(MODIFIER||||205|RTBDN|protein_coding|CODING|ENST00000589272|5|1),INTRON(MODIFIER||||213|RTBDN|protein_coding|CODING|ENST00000586969|4|1),INTRON(MODIFIER||||224|RTBDN|protein_coding|CODING|ENST00000393233|5|1),INTRON(MODIFIER||||229|RTBDN|protein_coding|CODING|ENST00000458671|4|1),INTRON(MODIFIER||||239|RTBDN|protein_coding|CODING|ENST00000592204|4|1),INTRON(MODIFIER||||261|RTBDN|protein_coding|CODING|ENST00000322912|5|1),INTRON(MODIFIER|||||CTD-2265O21.3|antisense|NON_CODING|ENST00000588469|2|1),INTRON(MODIFIER|||||HOOK2|processed_transcript|CODING|ENST00000589765|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:0:0:0:0,0:0,0:34,34:0,0	100:2:0:0:6,6:0,0:92,94:0,1
19	14051427	.	A	G	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||122|PODNL1|protein_coding|CODING|ENST00000585607|1|1),INTRON(MODIFIER||||31|PODNL1|protein_coding|CODING|ENST00000587458|1|1),INTRON(MODIFIER||||421|PODNL1|protein_coding|CODING|ENST00000538517|1|1),INTRON(MODIFIER||||510|PODNL1|protein_coding|CODING|ENST00000538371|1|1),UPSTREAM(MODIFIER||||163|PODNL1|protein_coding|CODING|ENST00000586075||1),UPSTREAM(MODIFIER||||430|PODNL1|protein_coding|CODING|ENST00000254320||1),UPSTREAM(MODIFIER||||512|PODNL1|protein_coding|CODING|ENST00000339560||1),UPSTREAM(MODIFIER|||||PODNL1|processed_transcript|CODING|ENST00000587288||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	46:1:0:0:45,46:0,0:0,0:0,0	83:1:0:0:77,80:0,0:5,6:0,0
19	17980735	.	A	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=AA->AC;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER||||643|SLC5A5|protein_coding|CODING|ENST00000222248||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:1:0:0:37,39:1,2:0,0:0,0	86:3:0:0:69,76:13,15:1,1:0,0
19	18387555	.	G	C	.	PASS	NT=ref;QSS=26;QSS_NT=26;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||347|JUND|protein_coding|CODING|ENST00000252818||1),INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER||||1134|KIAA1683|protein_coding|CODING|ENST00000427634||1),UPSTREAM(MODIFIER||||1180|KIAA1683|protein_coding|CODING|ENST00000359737||1),UPSTREAM(MODIFIER||||1367|KIAA1683|protein_coding|CODING|ENST00000392413||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	51:0:0:0:0,0:0,0:51,51:0,0	115:4:0:0:0,0:8,8:103,107:0,0
19	18729629	.	G	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||342|TMEM59L|protein_coding|CODING|ENST00000262817|7|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:0:0:0:0,0:0,0:32,33:0,0	85:1:0:0:5,5:1,1:77,78:1,1
19	19194688	.	C	T	.	PASS	NT=ref;QSS=24;QSS_NT=24;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||318|SLC25A42|protein_coding|CODING|ENST00000318596|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	52:4:0:0:0,0:48,53:0,0:0,0	119:4:0:0:0,0:109,114:0,0:6,6
19	19217861	.	C	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||318|SLC25A42|protein_coding|CODING|ENST00000318596|6|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:1:0:0:0,0:30,31:0,0:0,0	112:3:0:0:1,1:103,108:0,0:5,5
19	20949338	rs73543330	T	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=20949338;dbSNPBuildID=130;SSR=0;SAO=0;VP=05000000000500010e000100;WGT=1;VC=SNV;ASP;GNO;KGPilot123;KGPROD;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:0:0:0:0,0:0,0:0,0:32,32	109:2:0:0:0,0:5,10:0,0:102,104
19	20952893	.	T	G	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=TT->GT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	53:2:0:0:0,0:0,0:0,1:51,55	116:6:0:0:0,0:1,1:6,12:103,111
19	20952909	.	G	A	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	54:2:0:0:0,1:0,0:52,56:0,0	121:6:0:0:6,11:1,2:108,116:0,0
19	21040960	.	T	C	.	PASS	NT=ref;QSS=23;QSS_NT=23;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	55:0:0:0:0,0:0,0:0,0:55,55	93:1:0:0:0,0:4,4:0,0:88,89
19	22436176	rs2694431	A	G	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=22436176;RV;dbSNPBuildID=100;SSR=0;SAO=0;VP=050000000001000102000100;WGT=1;VC=SNV;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	41:3:0:0:38,41:0,0:0,0:0,0	87:8:0:0:69,76:0,1:10,11:0,0
19	22830135	.	T	C	.	PASS	NT=ref;QSS=25;QSS_NT=25;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||531|ZNF492|protein_coding|CODING|ENST00000456783|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	54:1:0:0:0,0:0,0:0,0:53,54	102:5:0:0:0,0:8,9:0,0:89,93
19	22865406	.	T	G	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=TT->GT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER||||499|AC011467.1|protein_coding|CODING|ENST00000340708||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	47:0:0:0:0,0:0,0:0,1:47,47	112:2:0:0:0,0:0,0:7,8:103,105
19	22865437	.	T	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->AT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER||||499|AC011467.1|protein_coding|CODING|ENST00000340708||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	46:0:0:0:0,2:0,0:0,0:46,46	121:0:0:0:8,10:0,0:0,0:113,117
19	23483017	.	G	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:0:0:0:0,0:0,0:30,30:0,0	104:3:0:0:7,10:0,0:94,94:0,0
19	24620243	.	A	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=AA->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	110:3:0:0:106,116:0,0:0,2:1,1	242:3:0:0:224,239:0,0:15,18:0,0
19	27741774	.	T	C	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:0:0:0:0,0:0,0:0,0:39,40	119:2:0:0:1,1:13,14:0,0:103,104
19	27768161	.	A	G	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	82:9:1:0:73,132:0,0:0,2:0,0	209:23:3:0:179,369:1,3:6,28:0,0
19	27768169	.	T	G	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=TT->GT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	77:8:1:0:0,0:0,0:0,3:69,120	188:17:2:0:0,0:0,0:8,26:163,336
19	27789694	rs62136580	A	G	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=27789694;dbSNPBuildID=129;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:0:0:0:34,52:0,0:0,0:0,0	95:4:0:0:83,141:0,0:8,10:0,0
19	27794428	.	T	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	46:2:0:0:0,0:1,1:0,0:43,57	116:4:0:0:0,0:9,10:0,0:103,137
19	27887084	.	C	T	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	120:6:0:0:0,0:113,219:0,3:1,4	289:25:0:0:1,1:244,516:0,9:19,25
19	28043488	.	C	A	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=CC->AC;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	54:1:0:0:0,1:53,53:0,0:0,0	100:3:0:0:11,12:85,86:0,1:1,1
19	28170495	.	T	A	.	PASS	NT=ref;QSS=26;QSS_NT=26;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||LINC00662|lincRNA|NON_CODING|ENST00000588027||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	51:0:0:0:0,0:0,0:0,0:51,52	116:3:0:0:8,9:0,0:0,0:105,107
19	30480339	.	C	A	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||32|URI1|protein_coding|CODING|ENST00000570564||1),INTRON(MODIFIER||||121|URI1|protein_coding|CODING|ENST00000576442|3|1),INTRON(MODIFIER||||459|URI1|protein_coding|CODING|ENST00000392271|4|1),INTRON(MODIFIER||||475|URI1|protein_coding|CODING|ENST00000360605|4|1),INTRON(MODIFIER||||495|URI1|protein_coding|CODING|ENST00000312051|3|1),INTRON(MODIFIER||||535|URI1|protein_coding|CODING|ENST00000542441|4|1),INTRON(MODIFIER||||70|URI1|protein_coding|CODING|ENST00000574233|5|1),INTRON(MODIFIER|||||URI1|nonsense_mediated_decay|CODING|ENST00000574110|3|1),INTRON(MODIFIER|||||URI1|nonsense_mediated_decay|CODING|ENST00000574666|5|1),INTRON(MODIFIER|||||URI1|processed_transcript|CODING|ENST00000570704|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	43:1:0:0:0,0:41,43:0,0:1,1	89:2:0:0:5,6:81,84:0,0:1,1
19	32012025	.	G	T	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:0:0:0:1,1:0,0:36,36:0,0	100:5:0:0:0,0:0,0:87,91:8,9
19	32742003	.	T	C	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	54:2:0:0:0,0:1,1:0,0:51,53	99:8:0:0:0,0:9,11:2,5:80,83
19	33030273	.	T	G	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	45:0:1:0:0,0:0,0:0,0:45,46	118:6:0:0:0,1:0,0:9,11:103,106
19	33338979	.	T	A	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||487|SLC7A9|protein_coding|CODING|ENST00000023064|9|1),INTRON(MODIFIER||||487|SLC7A9|protein_coding|CODING|ENST00000587772|9|1),INTRON(MODIFIER||||487|SLC7A9|protein_coding|CODING|ENST00000590341|9|1),INTRON(MODIFIER|||||SLC7A9|nonsense_mediated_decay|CODING|ENST00000590465|5|1),INTRON(MODIFIER|||||SLC7A9|nonsense_mediated_decay|CODING|ENST00000592232|5|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:0:0:0:0,0:0,0:0,0:37,39	117:1:0:0:14,15:0,0:0,0:102,103
19	33566149	.	T	C	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	42:1:0:0:0,0:0,0:0,0:41,43	102:0:0:0:0,0:9,9:1,1:92,93
19	33656903	.	T	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||426|WDR88|protein_coding|CODING|ENST00000361680|9|1),INTRON(MODIFIER||||472|WDR88|protein_coding|CODING|ENST00000355868|9|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	44:0:0:0:0,0:1,1:1,1:42,43	112:2:0:0:0,0:7,8:0,0:103,104
19	33676295	.	A	G	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||90|LRP3|protein_coding|CODING|ENST00000592484|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	44:3:0:0:41,42:0,2:0,0:0,0	93:0:0:0:82,84:1,1:10,10:0,0
19	37753985	rs149815285	G	A	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||CTD-3220F14.1|lincRNA|NON_CODING|ENST00000586324||1),DOWNSTREAM(MODIFIER|||||CTD-3220F14.1|lincRNA|NON_CODING|ENST00000586442||1),DOWNSTREAM(MODIFIER|||||CTD-3220F14.1|lincRNA|NON_CODING|ENST00000588763||1),DOWNSTREAM(MODIFIER|||||CTD-3220F14.1|lincRNA|NON_CODING|ENST00000590889||1),INTRON(MODIFIER|||||AC012309.5|lincRNA|NON_CODING|ENST00000438770|3|1),INTRON(MODIFIER|||||AC012309.5|lincRNA|NON_CODING|ENST00000587477|3|1),INTRON(MODIFIER|||||AC012309.5|lincRNA|NON_CODING|ENST00000588904|1|1),INTRON(MODIFIER|||||AC012309.5|lincRNA|NON_CODING|ENST00000591116|5|1),INTRON(MODIFIER|||||AC012309.5|lincRNA|NON_CODING|ENST00000592100|1|1),INTRON(MODIFIER|||||AC012309.5|lincRNA|NON_CODING|ENST00000592712|7|1),SPLICE_SITE_ACCEPTOR(HIGH|||||AC012309.5|lincRNA|NON_CODING|ENST00000592712|8|1);RSPOS=37753985;dbSNPBuildID=134;SSR=0;SAO=0;VP=050000080005000002000100;GENEINFO=LOC100507359:100507359;WGT=1;VC=SNV;INT;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	19:0:0:0:0,1:0,0:19,21:0,0	63:0:0:0:12,15:0,0:51,51:0,0
19	37963298	.	T	G	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||ZNF570|nonsense_mediated_decay|CODING|ENST00000587363||1),DOWNSTREAM(MODIFIER|||||ZNF570|processed_transcript|CODING|ENST00000591380||1),INTRON(MODIFIER||||147|ZNF570|protein_coding|CODING|ENST00000589725|2|1),INTRON(MODIFIER||||333|ZNF570|protein_coding|CODING|ENST00000388801|1|1),INTRON(MODIFIER||||536|ZNF570|protein_coding|CODING|ENST00000330173|2|1),INTRON(MODIFIER||||592|ZNF570|protein_coding|CODING|ENST00000586475|3|1),INTRON(MODIFIER|||||ZNF570|nonsense_mediated_decay|CODING|ENST00000588644|1|1),INTRON(MODIFIER|||||ZNF570|nonsense_mediated_decay|CODING|ENST00000590664|2|1),UPSTREAM(MODIFIER||||259|ZNF569|protein_coding|CODING|ENST00000448051||1),UPSTREAM(MODIFIER||||686|ZNF569|protein_coding|CODING|ENST00000316950||1),UPSTREAM(MODIFIER||||70|ZNF569|protein_coding|CODING|ENST00000591710||1),UPSTREAM(MODIFIER|||||ZNF569|processed_transcript|CODING|ENST00000591073||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:3:0:0:0,0:1,1:0,0:31,34	102:7:0:0:1,1:0,0:16,21:78,82
19	38835522	.	C	T	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||CATSPERG|retained_intron|CODING|ENST00000475646||1),DOWNSTREAM(MODIFIER|||||snoU13|snoRNA|NON_CODING|ENST00000459333||1),INTRON(MODIFIER||||1119|CATSPERG|protein_coding|CODING|ENST00000410018|6|1),INTRON(MODIFIER||||1159|CATSPERG|protein_coding|CODING|ENST00000409235|6|1),INTRON(MODIFIER||||517|CATSPERG|protein_coding|CODING|ENST00000215069|5|1),INTRON(MODIFIER||||659|CATSPERG|protein_coding|CODING|ENST00000409410|6|1),INTRON(MODIFIER|||||CATSPERG|nonsense_mediated_decay|CODING|ENST00000312265|6|1),INTRON(MODIFIER|||||CATSPERG|nonsense_mediated_decay|CODING|ENST00000412458|3|1),INTRON(MODIFIER|||||CATSPERG|nonsense_mediated_decay|CODING|ENST00000471517|7|1),INTRON(MODIFIER|||||CATSPERG|nonsense_mediated_decay|CODING|ENST00000475343|5|1),INTRON(MODIFIER|||||CATSPERG|processed_transcript|CODING|ENST00000466060|3|1),INTRON(MODIFIER|||||CATSPERG|retained_intron|CODING|ENST00000488473|1|1),UPSTREAM(MODIFIER|||||CATSPERG|processed_transcript|CODING|ENST00000467739||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	45:3:0:0:0,0:42,45:0,0:0,0	94:2:0:0:1,1:86,88:0,0:5,5
19	39864656	.	C	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=DOWNSTREAM(MODIFIER|||||Metazoa_SRP|misc_RNA|NON_CODING|ENST00000467650||1),INTRON(MODIFIER||||694|SAMD4B|protein_coding|CODING|ENST00000314471|6|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:0:0:0:0,0:34,34:0,0:0,0	99:1:0:0:1,1:90,93:0,0:7,7
19	40255136	.	C	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:0:0:0:0,0:35,35:0,0:0,0	84:2:0:0:0,0:77,79:0,0:5,5
19	41005988	rs8108480	A	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1309|SPTBN4|protein_coding|CODING|ENST00000344104|7|1),INTRON(MODIFIER||||2154|SPTBN4|protein_coding|CODING|ENST00000338932|7|1),INTRON(MODIFIER||||2564|SPTBN4|protein_coding|CODING|ENST00000352632|7|1);RSPOS=41005988;dbSNPBuildID=116;SSR=0;SAO=0;VP=050000080001000002000100;GENEINFO=SPTBN4:57731;WGT=1;VC=SNV;INT;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	27:0:0:0:27,29:0,0:0,0:0,0	62:0:0:0:57,58:5,5:0,0:0,0
19	41608824	.	G	A	.	PASS	NT=ref;QSS=27;QSS_NT=27;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	62:5:0:0:0,0:0,1:57,75:0,0	104:4:0:0:6,8:0,0:94,130:0,0
19	42037193	.	C	T	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=CC->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER||||165|CEACAM21|protein_coding|CODING|ENST00000407170||1),UPSTREAM(MODIFIER|||||CEACAM21|processed_transcript|CODING|ENST00000483481||1),UPSTREAM(MODIFIER|||||CEACAM21|processed_transcript|CODING|ENST00000494375||1),UPSTREAM(MODIFIER|||||CEACAM21|retained_intron|CODING|ENST00000487420||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	44:0:0:0:0,0:44,44:0,0:0,0	107:2:0:0:1,1:99,101:0,0:5,5
19	42578555	.	C	T	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||986|ZNF574|protein_coding|CODING|ENST00000222339|1|1),UPSTREAM(MODIFIER||||896|ZNF574|protein_coding|CODING|ENST00000359044||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:0:0:0:0,0:37,38:0,0:0,0	110:3:0:0:0,0:98,101:1,1:8,8
19	42722721	.	G	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER||||326|DEDD2|protein_coding|CODING|ENST00000336034||1),UPSTREAM(MODIFIER||||670|ZNF526|protein_coding|CODING|ENST00000301215||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	43:1:0:0:0,0:0,0:42,43:0,0	99:0:0:0:5,5:0,0:94,94:0,0
19	43114867	.	C	T	.	PASS	NT=ref;QSS=26;QSS_NT=26;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	53:1:0:0:0,0:52,53:0,0:0,0	111:4:0:0:0,0:102,106:0,0:5,5
19	43137005	.	G	A	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||CEACAMP1|unprocessed_pseudogene|NON_CODING|ENST00000434624|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:1:0:0:0,0:0,0:36,37:0,0	96:2:0:0:9,9:1,1:83,85:1,1
19	45441786	.	A	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER||||127|APOC4|protein_coding|CODING|ENST00000419266||1),UPSTREAM(MODIFIER||||127|APOC4|protein_coding|CODING|ENST00000436871||1),UPSTREAM(MODIFIER||||127|APOC4|protein_coding|CODING|ENST00000592954||1),UPSTREAM(MODIFIER||||178|APOC4|protein_coding|CODING|ENST00000589057||1),UPSTREAM(MODIFIER||||73|APOC4|protein_coding|CODING|ENST00000591600||1),UPSTREAM(MODIFIER|||||APOC4|nonsense_mediated_decay|CODING|ENST00000585685||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:5:0:0:32,35:0,4:0,0:0,0	75:11:0:0:54,63:3,5:0,0:7,9
19	45441787	.	C	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER||||127|APOC4|protein_coding|CODING|ENST00000419266||1),UPSTREAM(MODIFIER||||127|APOC4|protein_coding|CODING|ENST00000436871||1),UPSTREAM(MODIFIER||||127|APOC4|protein_coding|CODING|ENST00000592954||1),UPSTREAM(MODIFIER||||178|APOC4|protein_coding|CODING|ENST00000589057||1),UPSTREAM(MODIFIER||||73|APOC4|protein_coding|CODING|ENST00000591600||1),UPSTREAM(MODIFIER|||||APOC4|nonsense_mediated_decay|CODING|ENST00000585685||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:5:0:0:0,0:32,39:0,0:0,0	76:11:0:0:0,0:60,73:0,0:5,6
19	45792580	.	G	A	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||MARK4|retained_intron|CODING|ENST00000588621||1),DOWNSTREAM(MODIFIER|||||MARK4|retained_intron|CODING|ENST00000590897||1),INTRON(MODIFIER||||688|MARK4|protein_coding|CODING|ENST00000300843|13|1),INTRON(MODIFIER||||752|MARK4|protein_coding|CODING|ENST00000262891|13|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:0:0:0:0,0:1,1:35,35:0,0	72:5:0:0:6,8:0,0:61,66:0,0
19	45823598	.	A	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=AA->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER||||381|CKM|protein_coding|CODING|ENST00000221476|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	43:1:0:0:42,43:0,0:0,1:0,0	105:1:0:0:89,90:2,3:12,12:1,1
19	46068791	.	T	G	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||126|OPA3|protein_coding|CODING|ENST00000544371|1|1),INTRON(MODIFIER||||179|OPA3|protein_coding|CODING|ENST00000263275|1|1),INTRON(MODIFIER||||180|OPA3|protein_coding|CODING|ENST00000323060|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	43:0:0:0:0,0:0,0:1,1:42,42	92:0:0:0:0,0:0,0:5,5:87,88
19	46165431	.	G	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	44:0:0:0:0,0:0,0:44,44:0,0	88:0:0:0:5,6:3,3:80,83:0,0
19	46165439	.	A	G	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:0:0:0:40,40:0,0:0,0:0,0	90:0:0:0:85,88:1,1:4,5:0,0
19	46667591	.	G	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||119|IGFL2|protein_coding|CODING|ENST00000377693||1),DOWNSTREAM(MODIFIER||||130|IGFL2|protein_coding|CODING|ENST00000434646||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:0:0:0:0,0:0,0:31,31:1,1	94:1:0:0:4,5:0,0:89,89:0,0
19	47310979	.	G	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:1:0:0:0,0:0,0:36,36:0,0	83:4:0:0:4,8:0,0:75,76:0,0
19	48335124	.	A	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||299|CRX|protein_coding|CODING|ENST00000221996|1|1),INTRON(MODIFIER||||299|CRX|protein_coding|CODING|ENST00000539067|1|1),INTRON(MODIFIER||||54|CRX|protein_coding|CODING|ENST00000566686|1|1),INTRON(MODIFIER|||||CRX|nonsense_mediated_decay|CODING|ENST00000556900|1|1),INTRON(MODIFIER|||||CRX|nonsense_mediated_decay|CODING|ENST00000557738|1|1),INTRON(MODIFIER|||||CRX|processed_transcript|CODING|ENST00000556527|1|1),UPSTREAM(MODIFIER||||326|CRX|protein_coding|CODING|ENST00000535362||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:1:0:0:38,38:0,0:0,0:0,0	92:0:0:0:86,86:5,5:0,0:1,1
19	48423836	.	G	A	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=GG->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:0:0:0:0,2:0,0:29,48:0,0	60:1:0:0:13,24:0,0:46,97:0,0
19	48559776	.	A	G	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||527|PLA2G4C|protein_coding|CODING|ENST00000354276|14|1),INTRON(MODIFIER||||541|PLA2G4C|protein_coding|CODING|ENST00000413144|13|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	48:0:0:0:47,47:0,0:1,1:0,0	80:3:0:0:67,69:2,4:8,9:0,0
19	48834305	.	G	A	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||163|EMP3|protein_coding|CODING|ENST00000270221||1),DOWNSTREAM(MODIFIER||||349|TMEM143|protein_coding|CODING|ENST00000541566||1),DOWNSTREAM(MODIFIER||||359|TMEM143|protein_coding|CODING|ENST00000377431||1),DOWNSTREAM(MODIFIER||||394|TMEM143|protein_coding|CODING|ENST00000436660||1),DOWNSTREAM(MODIFIER||||424|TMEM143|protein_coding|CODING|ENST00000435956||1),DOWNSTREAM(MODIFIER||||459|TMEM143|protein_coding|CODING|ENST00000293261||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	43:0:0:0:0,0:0,0:43,43:0,0	99:0:0:0:6,6:0,0:93,100:0,0
19	49304440	.	C	G	.	PASS	NT=ref;QSS=24;QSS_NT=24;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||300|BCAT2|protein_coding|CODING|ENST00000545387|1|1),INTRON(MODIFIER||||352|BCAT2|protein_coding|CODING|ENST00000402551|4|1),INTRON(MODIFIER||||392|BCAT2|protein_coding|CODING|ENST00000316273|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	47:0:0:0:0,0:47,47:0,0:0,0	107:2:0:0:0,0:98,100:7,7:0,0
19	49335312	.	G	A	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||270|HSD17B14|protein_coding|CODING|ENST00000263278|4|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:6:0:0:0,0:0,0:34,41:0,0	87:7:0:0:10,11:0,0:70,76:0,0
19	49985603	rs189355059	G	A	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||178|FLT3LG|protein_coding|CODING|ENST00000344019||1),INTRON(MODIFIER||||235|FLT3LG|protein_coding|CODING|ENST00000204637|8|1);RSPOS=49985603;GMAF=0.0105;dbSNPBuildID=135;SSR=0;SAO=0;VP=050000080005000014000100;GENEINFO=FLT3LG:2323;WGT=1;VC=SNV;INT;ASP;KGPhase1;KGPROD	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	45:1:0:0:0,0:0,0:44,45:0,0	78:0:0:0:6,6:0,0:72,72:0,0
19	49985613	.	C	T	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||178|FLT3LG|protein_coding|CODING|ENST00000344019||1),INTRON(MODIFIER||||235|FLT3LG|protein_coding|CODING|ENST00000204637|8|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	48:0:0:0:0,0:48,49:0,0:0,0	81:0:0:0:0,0:75,75:0,0:6,6
19	49985616	.	T	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||178|FLT3LG|protein_coding|CODING|ENST00000344019||1),INTRON(MODIFIER||||235|FLT3LG|protein_coding|CODING|ENST00000204637|8|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	50:0:0:0:0,0:1,1:0,0:49,50	80:0:0:0:0,0:6,6:0,0:74,74
19	50236198	.	T	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	51:0:0:0:0,0:1,1:0,0:50,51	82:0:0:0:0,0:5,5:0,0:77,77
19	50243893	.	C	T	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=CC->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER||||392|TSKS|protein_coding|CODING|ENST00000358830|5|1),INTRON(MODIFIER||||592|TSKS|protein_coding|CODING|ENST00000246801|9|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	42:0:0:0:0,0:42,42:0,0:0,0	109:1:0:0:0,0:103,104:0,0:5,5
19	50834664	.	C	T	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||NAPSB|processed_transcript|NON_CODING|ENST00000527780||1),DOWNSTREAM(MODIFIER|||||NAPSB|retained_intron|NON_CODING|ENST00000531692||1),DOWNSTREAM(MODIFIER|||||NAPSB|retained_intron|NON_CODING|ENST00000534096||1),DOWNSTREAM(MODIFIER|||||NAPSB|retained_intron|NON_CODING|ENST00000534789||1),DOWNSTREAM(MODIFIER|||||NAPSB|transcribed_unprocessed_pseudogene|NON_CODING|ENST00000562112||1),INTRON(MODIFIER||||155|KCNC3|protein_coding|CODING|ENST00000391818|1|1),INTRON(MODIFIER||||191|NR1H2|protein_coding|CODING|ENST00000542413|1|1),INTRON(MODIFIER||||44|KCNC3|protein_coding|CODING|ENST00000474951|1|1),UPSTREAM(MODIFIER||||728|KCNC3|protein_coding|CODING|ENST00000376959||1),UPSTREAM(MODIFIER||||757|KCNC3|protein_coding|CODING|ENST00000477616||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:0:0:0:0,0:40,40:0,0:0,0	71:1:0:0:0,0:62,62:0,0:8,9
19	51427210	rs114384782	T	A	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||AC011483.1|retrotransposed|NON_CODING|ENST00000427643||1),INTERGENIC(MODIFIER||||||||||1);RSPOS=51427210;GMAF=0.0114;dbSNPBuildID=132;SSR=0;SAO=0;VP=050000000005040014000100;WGT=1;VC=SNV;ASP;VLD;KGPhase1;KGPROD	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	41:0:0:0:0,0:0,0:0,0:41,41	90:1:0:0:9,9:0,0:1,1:79,79
19	51478950	.	G	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||140|KLK7|protein_coding|CODING|ENST00000336317||1),DOWNSTREAM(MODIFIER||||253|KLK7|protein_coding|CODING|ENST00000304045||1),DOWNSTREAM(MODIFIER||||253|KLK7|protein_coding|CODING|ENST00000391807||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:4:0:0:0,0:0,0:31,38:0,0	74:6:0:0:6,6:2,3:60,74:0,0
19	52618845	rs201736146	T	A	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|aaA/aaT|K524N|781|ZNF616|protein_coding|CODING|ENST00000330123|4|1);RSPOS=52618845;dbSNPBuildID=137;SSR=0;SAO=0;VP=050200000a05000002000100;WGT=1;VC=SNV;S3D;NSM;REF;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	43:0:0:0:0,0:0,0:0,0:43,43	117:2:0:0:7,7:0,0:0,1:108,109
19	55172128	.	G	T	.	PASS	NT=ref;QSS=24;QSS_NT=24;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||130|LILRB4|protein_coding|CODING|ENST00000420271|1|1),UPSTREAM(MODIFIER||||395|LILRB4|protein_coding|CODING|ENST00000391734||1),UPSTREAM(MODIFIER||||398|LILRB4|protein_coding|CODING|ENST00000434286||1),UPSTREAM(MODIFIER||||447|LILRB4|protein_coding|CODING|ENST00000430952||1),UPSTREAM(MODIFIER||||448|LILRB4|protein_coding|CODING|ENST00000270452||1),UPSTREAM(MODIFIER||||448|LILRB4|protein_coding|CODING|ENST00000391736||1),UPSTREAM(MODIFIER||||449|LILRB4|protein_coding|CODING|ENST00000391733||1),UPSTREAM(MODIFIER|||||LILRB4|processed_transcript|CODING|ENST00000484241||1),UPSTREAM(MODIFIER|||||LILRB4|processed_transcript|CODING|ENST00000494796||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	47:1:0:0:0,0:0,0:46,47:0,0	102:2:0:0:0,0:0,0:89,91:11,11
19	56470398	.	A	C	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1029|NLRP8|protein_coding|CODING|ENST00000590542|3|1),INTRON(MODIFIER||||1048|NLRP8|protein_coding|CODING|ENST00000291971|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:0:0:0:40,41:0,0:0,0:0,0	90:3:0:0:77,81:10,11:0,0:0,0
19	56612174	.	T	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||126|ZNF787|protein_coding|CODING|ENST00000587279||1),INTRON(MODIFIER||||383|ZNF787|protein_coding|CODING|ENST00000270459|2|1),INTRON(MODIFIER|||||ZNF787|processed_transcript|CODING|ENST00000586787|1|1),UPSTREAM(MODIFIER|||||Y_RNA|misc_RNA|NON_CODING|ENST00000411128||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	45:3:0:0:0,0:1,2:0,0:41,46	101:8:0:0:0,0:13,20:0,0:80,88
19	56612185	.	C	T	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||126|ZNF787|protein_coding|CODING|ENST00000587279||1),INTRON(MODIFIER||||383|ZNF787|protein_coding|CODING|ENST00000270459|2|1),INTRON(MODIFIER|||||ZNF787|processed_transcript|CODING|ENST00000586787|1|1),UPSTREAM(MODIFIER|||||Y_RNA|misc_RNA|NON_CODING|ENST00000411128||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	43:4:0:0:0,0:39,48:0,0:0,0	100:10:0:0:0,0:84,100:0,0:6,7
19	58201167	.	C	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=START_GAINED(LOW||||291|AC004017.1|protein_coding|CODING|ENST00000541705|1|1),UTR_3_PRIME(MODIFIER||||654|ZNF551|protein_coding|CODING|ENST00000282296|3|1),UTR_3_PRIME(MODIFIER||||670|ZNF551|protein_coding|CODING|ENST00000356715|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	43:1:0:0:0,0:42,43:0,0:0,0	97:3:0:0:7,8:87,89:0,0:0,0
19	58963604	rs142716560	A	G	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=AA->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER||||534|ZNF324B|protein_coding|CODING|ENST00000391696|1|1),INTRON(MODIFIER||||544|ZNF324B|protein_coding|CODING|ENST00000336614|1|1),INTRON(MODIFIER||||544|ZNF324B|protein_coding|CODING|ENST00000545523|1|1);RSPOS=58963604;GMAF=0.0243;dbSNPBuildID=134;SSR=0;SAO=0;VP=050000080005000014000100;GENEINFO=ZNF324B:388569;WGT=1;VC=SNV;INT;ASP;KGPhase1;KGPROD	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	52:2:0:0:50,52:0,1:0,0:0,0	107:3:0:0:98,102:0,0:6,6:0,0
19	59098385	rs3997043	G	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||AC016629.2|processed_transcript|NON_CODING|ENST00000493504||1),INTRON(MODIFIER|||||AC016629.2|processed_transcript|NON_CODING|ENST00000473164|2|1),INTRON(MODIFIER|||||AC016629.2|processed_transcript|NON_CODING|ENST00000487264|2|1),INTRON(MODIFIER|||||AC016629.2|processed_transcript|NON_CODING|ENST00000492393|1|1);RSPOS=59098385;RV;dbSNPBuildID=108;SSR=0;SAO=0;VP=050100000009000002000100;WGT=1;VC=SNV;SLO;CFL;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:1:0:0:0,0:0,0:35,36:0,0	103:1:0:0:0,0:0,0:95,97:7,11
19	59112109	.	T	C	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||AC016629.2|processed_transcript|NON_CODING|ENST00000473164||1),DOWNSTREAM(MODIFIER|||||AC016629.2|processed_transcript|NON_CODING|ENST00000487264||1),DOWNSTREAM(MODIFIER|||||AC016629.2|transcribed_processed_pseudogene|NON_CODING|ENST00000464061||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:2:0:0:0,1:0,0:1,3:37,50	132:5:0:0:1,2:8,10:3,12:115,168
20	1993938	.	G	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	27:0:9:0:0,0:0,0:27,28:0,0	53:1:25:0:6,7:0,0:46,48:0,0
20	2464150	rs141593520	G	A	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=DOWNSTREAM(MODIFIER||||143|ZNF343|protein_coding|CODING|ENST00000445484||1),EXON(MODIFIER|||||ZNF343|processed_transcript|CODING|ENST00000465019|2|1),INTRON(MODIFIER|||||RP4-734P14.4|nonsense_mediated_decay|NON_CODING|ENST00000461548|5|1),NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|aCa/aTa|T486I|599|ZNF343|protein_coding|CODING|ENST00000278772|6|1);RSPOS=2464150;GMAF=0.0032;dbSNPBuildID=134;SSR=0;SAO=0;VP=050200000a05040016000100;GENEINFO=ZNF343:79175;WGT=1;VC=SNV;S3D;NSM;REF;ASP;VLD;KGPhase1;KGPROD;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	58:1:0:0:0,0:0,0:57,58:0,0	116:7:0:0:6,6:0,0:103,111:0,0
20	2850448	.	G	C	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||525|VPS16|protein_coding|CODING|ENST00000380443||1),DOWNSTREAM(MODIFIER||||695|VPS16|protein_coding|CODING|ENST00000380469||1),DOWNSTREAM(MODIFIER||||839|VPS16|protein_coding|CODING|ENST00000380445||1),DOWNSTREAM(MODIFIER|||||VPS16|processed_transcript|CODING|ENST00000466415||1),DOWNSTREAM(MODIFIER|||||VPS16|processed_transcript|CODING|ENST00000487461||1),INTRON(MODIFIER||||802|PTPRA|protein_coding|CODING|ENST00000380393|5|1),UPSTREAM(MODIFIER||||137|PTPRA|protein_coding|CODING|ENST00000431048||1),UPSTREAM(MODIFIER||||174|PTPRA|protein_coding|CODING|ENST00000430705||1),UPSTREAM(MODIFIER||||199|PTPRA|protein_coding|CODING|ENST00000418580||1),UPSTREAM(MODIFIER||||252|PTPRA|protein_coding|CODING|ENST00000455631||1),UPSTREAM(MODIFIER||||658|PTPRA|protein_coding|CODING|ENST00000358719||1),UPSTREAM(MODIFIER||||793|PTPRA|protein_coding|CODING|ENST00000216877||1),UPSTREAM(MODIFIER||||793|PTPRA|protein_coding|CODING|ENST00000318266||1),UPSTREAM(MODIFIER||||802|PTPRA|protein_coding|CODING|ENST00000399903||1),UPSTREAM(MODIFIER||||813|PTPRA|protein_coding|CODING|ENST00000425918||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:0:0:0:0,0:0,0:40,40:0,0	108:0:0:0:0,0:9,9:99,99:0,0
20	4070262	.	G	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:1:1:0:0,0:0,0:29,30:0,0	89:0:2:0:9,9:0,0:80,81:0,0
20	4962627	.	A	G	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||536|SLC23A2|protein_coding|CODING|ENST00000424750|1|1),INTRON(MODIFIER||||650|SLC23A2|protein_coding|CODING|ENST00000338244|1|1),INTRON(MODIFIER||||650|SLC23A2|protein_coding|CODING|ENST00000379333|1|1),INTRON(MODIFIER|||||SLC23A2|processed_transcript|CODING|ENST00000468355|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:3:0:0:37,39:0,0:0,0:0,1	93:7:0:0:78,85:0,0:8,9:0,0
20	5242722	.	A	G	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	42:1:0:0:41,42:0,0:0,0:0,0	121:1:0:0:114,115:0,0:6,6:0,0
20	6321209	.	A	T	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:1:0:0:37,38:0,0:0,0:0,0	102:2:0:0:93,95:0,0:0,0:7,7
20	7063058	.	T	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER|||||RP4-764O22.1|lincRNA|NON_CODING|ENST00000425900|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:0:0:0:0,0:0,0:0,0:36,36	108:1:0:0:0,0:4,4:0,0:103,104
20	8329465	.	T	G	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1173|PLCB1|protein_coding|CODING|ENST00000378637|2|1),INTRON(MODIFIER||||1173|PLCB1|protein_coding|CODING|ENST00000378641|2|1),INTRON(MODIFIER||||1216|PLCB1|protein_coding|CODING|ENST00000338037|2|1),INTRON(MODIFIER||||231|PLCB1|protein_coding|CODING|ENST00000404098|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:0:0:0:0,0:0,0:0,0:40,40	97:1:0:0:0,0:0,0:9,9:87,88
20	8372424	rs62195927	A	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1173|PLCB1|protein_coding|CODING|ENST00000378637|3|1),INTRON(MODIFIER||||1173|PLCB1|protein_coding|CODING|ENST00000378641|3|1),INTRON(MODIFIER||||1216|PLCB1|protein_coding|CODING|ENST00000338037|3|1),INTRON(MODIFIER||||231|PLCB1|protein_coding|CODING|ENST00000404098|3|1);RSPOS=8372424;GMAF=0.3613;dbSNPBuildID=129;SSR=0;SAO=0;VP=050000080001040116000100;GENEINFO=PLCB1:23236;WGT=1;VC=SNV;INT;VLD;GNO;KGPhase1;KGPROD;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	28:1:0:0:27,28:0,0:0,0:0,0	86:4:2:0:77,80:0,0:5,6:0,0
20	8908559	.	G	T	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||RP5-859I17.2|processed_pseudogene|NON_CODING|ENST00000439121||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:0:0:0:0,0:0,0:37,37:0,0	106:0:0:0:0,0:0,0:99,99:7,7
20	8942826	.	C	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:0:0:0:0,0:35,35:0,0:0,0	120:0:0:0:0,0:115,115:0,0:5,5
20	8986740	.	C	T	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:1:0:0:0,0:36,38:0,0:0,0	79:2:0:0:0,0:70,75:0,0:7,7
20	9378393	.	G	A	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1023|PLCB4|protein_coding|CODING|ENST00000414679|11|1),INTRON(MODIFIER||||1175|PLCB4|protein_coding|CODING|ENST00000278655|17|1),INTRON(MODIFIER||||1175|PLCB4|protein_coding|CODING|ENST00000378493|16|1),INTRON(MODIFIER||||1187|PLCB4|protein_coding|CODING|ENST00000378473|18|1),INTRON(MODIFIER||||1194|PLCB4|protein_coding|CODING|ENST00000334005|18|1),INTRON(MODIFIER||||1194|PLCB4|protein_coding|CODING|ENST00000378501|16|1),INTRON(MODIFIER|||||PLCB4|processed_transcript|CODING|ENST00000464199|10|1),INTRON(MODIFIER|||||PLCB4|processed_transcript|CODING|ENST00000473151|9|1),INTRON(MODIFIER|||||PLCB4|processed_transcript|CODING|ENST00000482123|9|1),INTRON(MODIFIER|||||PLCB4|processed_transcript|CODING|ENST00000492632|16|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	43:0:0:0:0,0:0,0:43,43:0,0	115:1:0:0:11,11:0,0:103,104:0,0
20	10627541	.	G	A	.	PASS	NT=ref;QSS=26;QSS_NT=26;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1059|JAG1|protein_coding|CODING|ENST00000423891|12|1),INTRON(MODIFIER||||1218|JAG1|protein_coding|CODING|ENST00000254958|14|1),UPSTREAM(MODIFIER|||||JAG1|processed_transcript|CODING|ENST00000488480||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	51:0:0:0:0,0:0,0:51,51:0,0	92:1:0:0:10,10:0,0:81,82:0,0
20	10844259	.	T	C	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||RP4-697P8.2|lincRNA|NON_CODING|ENST00000421788||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:0:0:0:0,0:0,0:0,0:36,36	119:1:0:0:0,0:12,12:0,0:106,107
20	10918475	.	C	A	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:0:0:0:0,0:37,37:0,0:0,0	120:2:0:0:6,7:112,113:0,0:0,0
20	11064397	.	C	T	.	PASS	NT=ref;QSS=25;QSS_NT=25;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	50:0:0:0:0,0:49,49:1,1:0,0	125:1:0:0:0,0:118,119:0,0:6,6
20	12858189	rs113208321	T	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP5-1069C8.2|lincRNA|NON_CODING|ENST00000456265|10|1);RSPOS=12858189;dbSNPBuildID=132;SSR=0;SAO=0;VP=050100000001000102000100;WGT=1;VC=SNV;SLO;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:1:0:0:0,0:0,0:0,1:31,31	96:0:0:0:0,0:5,5:0,0:91,91
20	13830394	.	G	A	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||SEL1L2|processed_transcript|CODING|ENST00000492548||1),INTRON(MODIFIER||||575|SEL1L2|protein_coding|CODING|ENST00000378072|17|1),INTRON(MODIFIER||||688|SEL1L2|protein_coding|CODING|ENST00000284951|19|1),INTRON(MODIFIER|||||SEL1L2|nonsense_mediated_decay|CODING|ENST00000423870|20|1),INTRON(MODIFIER|||||SEL1L2|processed_transcript|CODING|ENST00000482196|2|1),INTRON(MODIFIER|||||SEL1L2|processed_transcript|CODING|ENST00000486903|18|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	43:0:0:0:0,0:0,0:43,43:0,0	118:2:0:0:9,11:0,0:107,107:0,0
20	14937251	.	G	T	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||425|MACROD2|protein_coding|CODING|ENST00000217246|5|1),INTRON(MODIFIER||||448|MACROD2|protein_coding|CODING|ENST00000310348|5|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	44:0:0:0:0,0:0,0:44,44:0,0	112:2:0:0:0,0:0,0:103,106:7,7
20	15393933	.	G	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||213|MACROD2|protein_coding|CODING|ENST00000402914|2|1),INTRON(MODIFIER||||425|MACROD2|protein_coding|CODING|ENST00000217246|6|1),INTRON(MODIFIER||||448|MACROD2|protein_coding|CODING|ENST00000310348|6|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:0:0:0:0,0:0,0:32,32:0,0	96:1:0:0:0,0:0,0:89,91:6,6
20	15435078	.	A	C	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||213|MACROD2|protein_coding|CODING|ENST00000402914|3|1),INTRON(MODIFIER||||425|MACROD2|protein_coding|CODING|ENST00000217246|7|1),INTRON(MODIFIER||||448|MACROD2|protein_coding|CODING|ENST00000310348|7|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:0:0:0:38,39:0,0:0,0:0,0	72:0:0:0:64,65:8,9:0,0:0,0
20	17640133	.	C	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=DOWNSTREAM(MODIFIER||||299|RRBP1|protein_coding|CODING|ENST00000398782||1),INTRON(MODIFIER||||751|RRBP1|protein_coding|CODING|ENST00000455029|2|1),INTRON(MODIFIER||||977|RRBP1|protein_coding|CODING|ENST00000360807|2|1),INTRON(MODIFIER||||977|RRBP1|protein_coding|CODING|ENST00000377807|3|1),SYNONYMOUS_CODING(LOW|SILENT|aaG/aaA|K340|1410|RRBP1|protein_coding|CODING|ENST00000246043|1|1),SYNONYMOUS_CODING(LOW|SILENT|aaG/aaA|K340|1410|RRBP1|protein_coding|CODING|ENST00000377813|3|1),UPSTREAM(MODIFIER|||||RRBP1|processed_transcript|CODING|ENST00000495501||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	42:4:0:0:0,0:37,46:1,1:0,1	86:5:0:0:0,0:74,89:0,0:7,8
20	17996954	.	T	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||PTMAP3|processed_pseudogene|NON_CODING|ENST00000447474||1),INTRON(MODIFIER|||||OVOL2|processed_transcript|CODING|ENST00000486776|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:2:0:0:0,0:0,0:0,0:28,30	92:3:0:0:0,0:0,0:10,11:79,83
20	19114908	.	C	T	.	PASS	NT=ref;QSS=25;QSS_NT=25;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	49:0:0:0:0,0:49,49:0,0:0,0	101:2:0:0:0,0:91,92:0,0:8,9
20	20358886	rs200823880	G	T	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=20358886;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	42:1:0:0:1,1:0,0:40,41:0,0	98:1:0:0:0,0:0,0:87,88:10,10
20	21968943	.	A	T	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:1:0:0:39,40:0,0:0,0:0,0	99:0:0:0:89,90:1,1:0,0:9,9
20	22173062	.	G	A	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:0:0:0:0,0:0,0:35,36:0,0	85:0:0:0:6,6:0,0:79,79:0,0
20	23452015	rs78248884	T	G	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||CST12P|unitary_pseudogene|NON_CODING|ENST00000457644||1);RSPOS=23452015;dbSNPBuildID=131;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:1:0:0:0,0:0,0:0,0:34,34	102:0:0:0:0,0:0,0:7,8:95,95
20	25734660	rs200195404	C	T	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||RP13-401N8.1|antisense|NON_CODING|ENST00000376445||1),INTERGENIC(MODIFIER||||||||||1);RSPOS=25734660;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	57:0:0:0:0,0:57,66:0,0:0,0	136:2:0:0:0,0:125,144:2,4:7,13
20	25735009	rs201610442	T	A	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||RP13-401N8.1|antisense|NON_CODING|ENST00000376445||1),INTERGENIC(MODIFIER||||||||||1);RSPOS=25735009;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:0:0:0:0,0:0,0:0,0:36,40	142:2:0:0:10,12:0,0:0,0:130,149
20	25735338	rs78613684	A	G	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||RP13-401N8.1|antisense|NON_CODING|ENST00000376445||1),INTERGENIC(MODIFIER||||||||||1);RSPOS=25735338;dbSNPBuildID=131;SSR=0;SAO=0;VP=050000000009000102000100;WGT=1;VC=SNV;CFL;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	108:0:0:0:107,114:0,0:1,1:0,0	354:6:0:0:339,372:0,0:9,16:0,1
20	25735871	.	A	C	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||RP13-401N8.1|antisense|NON_CODING|ENST00000376445||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:0:0:0:40,41:0,0:0,0:0,0	108:4:0:0:99,113:5,6:0,1:0,0
20	25738050	rs76014549	A	G	.	PASS	NT=ref;QSS=23;QSS_NT=23;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||RP13-401N8.1|antisense|NON_CODING|ENST00000376445||1),INTERGENIC(MODIFIER||||||||||1);RSPOS=25738050;dbSNPBuildID=131;SSR=0;SAO=0;VP=050000000005000102000100;WGT=1;VC=SNV;ASP;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	71:0:0:0:71,112:0,0:0,0:0,0	173:4:0:0:162,259:0,0:7,9:0,1
20	25739179	.	C	T	.	PASS	NT=ref;QSS=34;QSS_NT=34;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||77|FAM182B|protein_coding|CODING|ENST00000376404||1),DOWNSTREAM(MODIFIER|||||FAM182B|processed_transcript|CODING|ENST00000478164||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	86:17:0:0:0,0:69,103:0,1:0,0	234:33:0:0:0,0:181,257:0,0:20,32
20	25739192	.	G	A	.	PASS	NT=ref;QSS=32;QSS_NT=32;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||77|FAM182B|protein_coding|CODING|ENST00000376404||1),DOWNSTREAM(MODIFIER|||||FAM182B|processed_transcript|CODING|ENST00000478164||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	83:18:0:0:0,1:0,0:65,100:0,0	242:42:0:0:16,27:0,0:184,270:0,0
20	25740422	rs79084813	G	T	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||77|FAM182B|protein_coding|CODING|ENST00000376404||1),DOWNSTREAM(MODIFIER|||||FAM182B|processed_transcript|CODING|ENST00000478164||1),INTERGENIC(MODIFIER||||||||||1);RSPOS=25740422;dbSNPBuildID=131;SSR=0;SAO=0;VP=050000000009000102000100;WGT=1;VC=SNV;CFL;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	72:0:0:0:0,0:0,0:72,87:0,0	257:3:0:0:0,0:0,0:245,306:9,14
20	25843843	.	G	A	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||77|FAM182B|protein_coding|CODING|ENST00000376404|1|1),INTRON(MODIFIER|||||FAM182B|processed_transcript|CODING|ENST00000478164|1|1),INTRON(MODIFIER|||||FAM182B|processed_transcript|CODING|ENST00000582267|2|1),UPSTREAM(MODIFIER||||106|FAM182B|protein_coding|CODING|ENST00000584071||1),UPSTREAM(MODIFIER||||152|FAM182B|protein_coding|CODING|ENST00000376403||1),UPSTREAM(MODIFIER|||||FAM182B|processed_transcript|CODING|ENST00000584356||1),UPSTREAM(MODIFIER|||||RP13-401N8.4|lincRNA|NON_CODING|ENST00000424021||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	78:2:0:0:1,1:0,0:75,94:0,0	136:6:0:0:6,6:0,0:124,166:0,0
20	25846038	.	A	T	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=AA->AT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER||||77|FAM182B|protein_coding|CODING|ENST00000376404|1|1),INTRON(MODIFIER|||||FAM182B|processed_transcript|CODING|ENST00000478164|1|1),INTRON(MODIFIER|||||FAM182B|processed_transcript|CODING|ENST00000582267|2|1),INTRON(MODIFIER|||||RP13-401N8.4|lincRNA|NON_CODING|ENST00000424021|1|1),UPSTREAM(MODIFIER||||106|FAM182B|protein_coding|CODING|ENST00000584071||1),UPSTREAM(MODIFIER||||152|FAM182B|protein_coding|CODING|ENST00000376403||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	57:7:0:0:50,63:0,0:0,0:0,2	112:11:1:0:96,125:0,0:0,0:5,7
20	25860447	.	A	G	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=AA->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	58:0:0:0:58,62:0,0:0,2:0,0	171:4:0:0:159,173:0,2:8,13:0,0
20	25864750	.	T	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:0:0:0:0,0:0,1:0,0:35,37	97:1:0:0:0,0:6,7:0,0:90,98
20	25901241	.	A	G	.	PASS	NT=ref;QSS=29;QSS_NT=29;SGT=AA->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||CFTRP1|unprocessed_pseudogene|NON_CODING|ENST00000456646||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	81:0:0:0:81,93:0,0:0,1:0,0	240:4:0:0:220,265:0,0:16,17:0,0
20	25907144	.	A	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	83:6:0:0:75,90:1,1:1,1:0,0	215:23:0:0:184,232:1,3:7,8:0,0
20	25983370	rs77073954	C	T	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||RP4-760C5.2|lincRNA|NON_CODING|ENST00000437782||1);RSPOS=25983370;dbSNPBuildID=131;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:0:0:0:0,0:40,40:0,0:0,0	94:0:0:0:0,0:85,85:0,0:9,11
20	26063309	.	G	T	.	PASS	NT=ref;QSS=23;QSS_NT=23;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||154|FAM182A|protein_coding|CODING|ENST00000246000|4|1),INTRON(MODIFIER||||154|FAM182A|protein_coding|CODING|ENST00000376398|4|1),INTRON(MODIFIER||||77|FAM182A|protein_coding|CODING|ENST00000415411|3|1),INTRON(MODIFIER|||||FAM182A|processed_transcript|CODING|ENST00000482133|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	45:1:0:0:0,0:0,0:44,74:0,0	95:1:0:0:0,1:0,0:83,149:11,16
20	26087814	rs145798732	C	G	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||NCOR1P1|processed_transcript|NON_CODING|ENST00000478176|1|1),INTRON(MODIFIER|||||NCOR1P1|transcribed_unprocessed_pseudogene|NON_CODING|ENST00000486162|1|1);RSPOS=26087814;dbSNPBuildID=134;SSR=0;SAO=0;VP=050000080005000002000100;GENEINFO=NCOR1P1:149934;WGT=1;VC=SNV;INT;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	42:2:0:0:0,1:40,57:0,0:0,0	120:5:0:0:1,2:104,140:10,19:0,0
20	26088740	.	G	T	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=GG->GT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER|||||NCOR1P1|processed_transcript|NON_CODING|ENST00000478176|1|1),INTRON(MODIFIER|||||NCOR1P1|transcribed_unprocessed_pseudogene|NON_CODING|ENST00000486162|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	62:1:0:0:1,1:0,0:60,65:0,1	137:1:0:0:1,1:0,0:125,143:10,14
20	26131257	.	G	C	.	PASS	NT=ref;QSS=25;QSS_NT=25;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	50:0:0:0:0,0:0,0:50,50:0,0	94:0:0:0:0,0:9,10:85,85:0,0
20	26141064	.	T	C	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:0:0:0:0,0:0,0:0,0:40,40	102:0:0:0:0,0:6,7:0,0:96,97
20	26239239	.	A	G	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:0:0:0:32,32:0,0:0,0:0,0	107:0:0:0:99,106:0,0:8,9:0,0
20	26255632	rs79577630	G	T	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=GG->GT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=26255632;dbSNPBuildID=131;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	44:0:0:0:0,0:0,0:44,45:0,1	120:4:0:0:0,1:0,0:103,108:13,16
20	26293088	.	G	A	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	49:14:0:0:0,2:0,0:35,92:0,1	188:61:0:0:6,16:0,0:121,268:0,0
20	26293148	.	C	A	.	PASS	NT=ref;QSS=23;QSS_NT=23;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	71:25:0:0:0,2:46,110:0,0:0,0	209:61:0:0:9,15:139,292:0,0:0,2
20	26315403	.	A	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	120:30:0:0:88,184:1,1:1,5:0,5	358:83:0:0:264,508:0,3:0,12:11,35
20	26315731	.	C	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->AC;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	92:27:0:0:0,3:65,153:0,3:0,1	265:83:0:0:10,20:170,420:1,5:1,6
20	29420352	.	A	G	.	PASS	NT=ref;QSS=28;QSS_NT=28;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	72:1:0:0:71,79:0,0:0,1:0,0	221:3:0:0:210,239:0,0:8,18:0,0
20	29420362	rs180849859	A	T	.	PASS	NT=ref;QSS=28;QSS_NT=28;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=29420362;dbSNPBuildID=135;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	67:1:0:0:66,74:0,0:0,0:0,1	220:4:0:0:208,238:0,0:0,0:8,18
20	29426110	rs113892865	T	C	.	PASS	NT=ref;QSS=30;QSS_NT=30;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=29426110;dbSNPBuildID=132;SSR=0;SAO=0;VP=050100000009000102000100;WGT=1;VC=SNV;SLO;CFL;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:0:0:0:0,0:0,0:0,0:33,37	104:1:0:0:0,0:19,20:1,1:83,88
20	29441757	.	G	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	25:0:0:0:0,0:0,0:25,25:0,0	63:1:0:0:7,11:0,0:55,56:0,0
20	29455015	.	G	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	50:0:0:0:0,0:0,0:49,55:1,1	116:0:0:0:0,0:0,0:109,132:7,10
20	29457185	rs201976324	T	G	.	PASS	NT=ref;QSS=25;QSS_NT=25;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=29457185;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	50:1:0:0:0,0:0,0:0,0:49,58	119:2:0:0:0,0:1,1:10,12:106,127
20	29467665	rs201896384	G	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=29467665;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:1:0:0:0,0:0,0:36,40:0,0	141:0:0:0:6,10:0,0:135,141:0,0
20	29483180	rs73604663	T	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=TT->AT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=29483180;dbSNPBuildID=130;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	51:0:0:0:0,1:0,0:0,0:51,52	141:3:0:0:7,7:0,0:0,0:131,136
20	29564633	rs11699176	T	G	.	PASS	NT=ref;QSS=25;QSS_NT=25;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||RP4-610C12.1|antisense|NON_CODING|ENST00000432067||1),INTRON(MODIFIER|||||RP4-610C12.1|antisense|NON_CODING|ENST00000445151|2|1);RSPOS=29564633;dbSNPBuildID=120;SSR=0;SAO=0;VP=050000000005040103000100;WGT=1;VC=SNV;ASP;VLD;GNO;OTHERKG;PH3	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	51:0:0:0:0,0:1,1:0,0:50,50	103:1:0:0:0,1:0,0:11,11:91,91
20	29564635	rs11699177	T	A	.	PASS	NT=ref;QSS=26;QSS_NT=26;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||RP4-610C12.1|antisense|NON_CODING|ENST00000432067||1),INTRON(MODIFIER|||||RP4-610C12.1|antisense|NON_CODING|ENST00000445151|2|1);RSPOS=29564635;dbSNPBuildID=120;SSR=0;SAO=0;VP=050000000001040102000100;WGT=1;VC=SNV;VLD;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	51:0:0:0:0,0:0,0:0,0:51,51	101:1:0:0:7,7:1,1:0,1:92,92
20	29564643	rs11698648	A	G	.	PASS	NT=ref;QSS=25;QSS_NT=25;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||RP4-610C12.1|antisense|NON_CODING|ENST00000432067||1),INTRON(MODIFIER|||||RP4-610C12.1|antisense|NON_CODING|ENST00000445151|2|1);RSPOS=29564643;dbSNPBuildID=120;SSR=0;SAO=0;VP=050000000001040103000100;WGT=1;VC=SNV;VLD;GNO;OTHERKG;PH3	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	52:0:0:0:51,51:1,1:0,0:0,0	102:1:0:0:95,96:0,0:6,6:0,0
20	29581730	.	C	G	.	PASS	NT=ref;QSS=24;QSS_NT=24;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP4-610C12.1|antisense|NON_CODING|ENST00000432067|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	97:1:0:0:0,0:96,107:0,0:0,0	194:4:0:0:0,0:181,192:9,13:0,0
20	29588761	.	G	T	.	PASS	NT=ref;QSS=44;QSS_NT=44;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP4-610C12.1|antisense|NON_CODING|ENST00000432067|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	106:6:0:0:0,0:0,0:100,130:0,2	295:22:0:0:0,0:0,0:263,374:10,18
20	29600526	.	G	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||RP4-610C12.1|antisense|NON_CODING|ENST00000432067||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	69:2:0:0:1,1:1,1:65,73:0,0	160:3:0:0:7,7:0,0:150,177:0,0
20	29617748	.	C	T	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||FRG1B|processed_transcript|CODING|ENST00000468180||1),INTRON(MODIFIER||||121|FRG1B|protein_coding|CODING|ENST00000439954|2|1),INTRON(MODIFIER||||182|FRG1B|protein_coding|CODING|ENST00000278882|2|1),INTRON(MODIFIER||||182|FRG1B|protein_coding|CODING|ENST00000358464|2|1),INTRON(MODIFIER|||||FRG1B|processed_transcript|CODING|ENST00000482423|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	66:2:0:0:0,1:64,92:0,0:0,3	198:2:0:0:0,0:188,227:0,0:8,18
20	29623839	.	T	C	.	PASS	NT=ref;QSS=23;QSS_NT=23;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||FRG1B|processed_transcript|CODING|ENST00000482423||1),INTRON(MODIFIER||||121|FRG1B|protein_coding|CODING|ENST00000439954|3|1),INTRON(MODIFIER||||182|FRG1B|protein_coding|CODING|ENST00000278882|3|1),INTRON(MODIFIER||||182|FRG1B|protein_coding|CODING|ENST00000358464|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	47:2:0:0:0,0:0,0:0,0:45,59	151:2:0:0:1,1:6,6:0,0:142,182
20	29627254	.	C	T	.	PASS	NT=ref;QSS=29;QSS_NT=29;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||FRG1B|processed_transcript|CODING|ENST00000482423||1),INTRON(MODIFIER||||121|FRG1B|protein_coding|CODING|ENST00000439954|5|1),INTRON(MODIFIER||||182|FRG1B|protein_coding|CODING|ENST00000278882|5|1),INTRON(MODIFIER||||182|FRG1B|protein_coding|CODING|ENST00000358464|5|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	101:0:0:0:0,0:100,127:0,0:1,1	279:2:0:0:1,1:256,319:0,0:20,23
20	29649251	.	C	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:1:0:0:0,0:35,38:0,0:0,1	95:3:0:0:0,0:86,92:1,1:5,9
20	29825193	.	G	T	.	PASS	NT=ref;QSS=25;QSS_NT=25;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	83:21:0:0:0,3:0,2:62,239:0,16	217:70:3:0:1,14:0,10:138,571:8,45
20	29825658	.	A	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	47:3:0:0:44,101:0,0:0,2:0,5	111:1:0:0:100,247:0,0:0,3:10,19
20	32479613	rs185130173	T	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=32479613;GMAF=0.0668;dbSNPBuildID=135;SSR=0;SAO=0;VP=050000000015000014000100;WGT=1;VC=SNV;OTH;ASP;KGPhase1;KGPROD	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:0:0:0:0,0:0,0:0,0:31,34	94:7:1:0:0,0:7,9:0,0:80,97
20	32491878	.	T	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	27:0:0:0:0,0:0,0:0,0:27,29	98:0:0:0:7,7:2,2:0,0:89,91
20	32792564	.	A	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||132|ASIP|protein_coding|CODING|ENST00000568305|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:0:0:0:34,34:0,0:0,0:0,0	93:1:0:0:82,82:0,0:0,0:10,11
20	32972497	.	C	T	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||752|ITCH|protein_coding|CODING|ENST00000535650|2|1),INTRON(MODIFIER||||862|ITCH|protein_coding|CODING|ENST00000374864|2|1),INTRON(MODIFIER||||903|ITCH|protein_coding|CODING|ENST00000262650|2|1),INTRON(MODIFIER|||||ITCH|processed_transcript|CODING|ENST00000486883|2|1),UPSTREAM(MODIFIER|||||Y_RNA|misc_RNA|NON_CODING|ENST00000364628||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:4:0:0:0,0:36,41:0,0:0,0	82:11:0:0:0,0:62,73:0,0:9,10
20	33256262	.	T	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||415|PIGU|protein_coding|CODING|ENST00000374820|1|1),INTRON(MODIFIER||||423|PIGU|protein_coding|CODING|ENST00000452740|1|1),INTRON(MODIFIER||||435|PIGU|protein_coding|CODING|ENST00000217446|1|1),INTRON(MODIFIER|||||PIGU|retained_intron|CODING|ENST00000462389|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	22:2:0:0:0,0:0,0:0,0:20,22	48:1:0:0:8,8:0,0:2,2:37,39
20	33475777	.	A	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||ACSS2|processed_transcript|CODING|ENST00000461051||1),DOWNSTREAM(MODIFIER|||||ACSS2|processed_transcript|CODING|ENST00000490046||1),INTRON(MODIFIER||||146|ACSS2|protein_coding|CODING|ENST00000484354|2|1),INTRON(MODIFIER||||162|ACSS2|protein_coding|CODING|ENST00000488172|2|1),INTRON(MODIFIER||||181|ACSS2|protein_coding|CODING|ENST00000493805|2|1),INTRON(MODIFIER||||202|ACSS2|protein_coding|CODING|ENST00000473172|2|1),INTRON(MODIFIER||||651|ACSS2|protein_coding|CODING|ENST00000336325|2|1),INTRON(MODIFIER||||701|ACSS2|protein_coding|CODING|ENST00000360596|2|1),INTRON(MODIFIER||||714|ACSS2|protein_coding|CODING|ENST00000253382|2|1),INTRON(MODIFIER|||||ACSS2|nonsense_mediated_decay|CODING|ENST00000473239|2|1),INTRON(MODIFIER|||||ACSS2|nonsense_mediated_decay|CODING|ENST00000475459|2|1),INTRON(MODIFIER|||||ACSS2|nonsense_mediated_decay|CODING|ENST00000477932|2|1),INTRON(MODIFIER|||||ACSS2|nonsense_mediated_decay|CODING|ENST00000480274|2|1),INTRON(MODIFIER|||||ACSS2|nonsense_mediated_decay|CODING|ENST00000480978|2|1),INTRON(MODIFIER|||||ACSS2|nonsense_mediated_decay|CODING|ENST00000481284|2|1),INTRON(MODIFIER|||||ACSS2|processed_transcript|CODING|ENST00000464399|1|1),INTRON(MODIFIER|||||ACSS2|processed_transcript|CODING|ENST00000467019|2|1),INTRON(MODIFIER|||||ACSS2|processed_transcript|CODING|ENST00000476922|2|1),INTRON(MODIFIER|||||ACSS2|processed_transcript|CODING|ENST00000481971|2|1),INTRON(MODIFIER|||||ACSS2|processed_transcript|CODING|ENST00000497927|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:2:0:0:38,42:0,0:0,0:0,0	75:0:0:0:71,72:0,0:4,4:0,0
20	33741502	.	A	T	.	PASS	NT=ref;QSS=24;QSS_NT=24;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||404|EDEM2|protein_coding|CODING|ENST00000540582|5|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	55:4:0:0:48,52:1,2:2,4:0,0	127:5:0:0:113,121:1,1:1,4:7,8
20	34577140	.	A	T	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||423|C20orf152|protein_coding|CODING|ENST00000538900|7|1),INTRON(MODIFIER||||572|C20orf152|protein_coding|CODING|ENST00000349339|7|1),INTRON(MODIFIER||||576|C20orf152|protein_coding|CODING|ENST00000373973|7|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:0:0:0:36,36:0,0:0,0:0,0	118:1:0:0:109,110:1,1:0,0:7,7
20	34589647	.	C	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||423|C20orf152|protein_coding|CODING|ENST00000538900|8|1),INTRON(MODIFIER||||572|C20orf152|protein_coding|CODING|ENST00000349339|8|1),INTRON(MODIFIER||||576|C20orf152|protein_coding|CODING|ENST00000373973|8|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	56:7:0:0:0,0:48,59:0,0:1,1	104:5:0:0:0,0:93,107:0,0:6,7
20	35941836	.	A	G	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||56|MANBAL|protein_coding|CODING|ENST00000397150|3|1),INTRON(MODIFIER||||85|MANBAL|protein_coding|CODING|ENST00000373605|3|1),INTRON(MODIFIER||||85|MANBAL|protein_coding|CODING|ENST00000373606|2|1),INTRON(MODIFIER||||85|MANBAL|protein_coding|CODING|ENST00000397151|3|1),INTRON(MODIFIER||||85|MANBAL|protein_coding|CODING|ENST00000397152|4|1),INTRON(MODIFIER||||85|MANBAL|protein_coding|CODING|ENST00000397156|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	44:1:0:0:43,45:0,0:0,0:0,0	127:3:0:0:114,117:0,0:10,11:0,0
20	36763729	.	T	G	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||TGM2|retained_intron|CODING|ENST00000468262||1),INTRON(MODIFIER||||606|TGM2|protein_coding|CODING|ENST00000536701|9|1),INTRON(MODIFIER||||627|TGM2|protein_coding|CODING|ENST00000536724|9|1),INTRON(MODIFIER||||687|TGM2|protein_coding|CODING|ENST00000361475|10|1),INTRON(MODIFIER|||||TGM2|processed_transcript|CODING|ENST00000485572|10|1),UPSTREAM(MODIFIER|||||TGM2|retained_intron|CODING|ENST00000469269||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	45:1:0:0:0,0:0,0:0,0:44,46	97:1:0:0:0,0:0,0:9,9:87,88
20	36864090	.	T	C	.	PASS	NT=ref;QSS=23;QSS_NT=23;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1200|KIAA1755|protein_coding|CODING|ENST00000279024|4|1),INTRON(MODIFIER|||||KIAA1755|retained_intron|CODING|ENST00000496900|4|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	46:1:0:0:0,0:0,0:0,0:45,47	112:0:0:0:0,0:5,5:1,1:106,106
20	40453098	.	A	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	26:0:0:0:26,26:0,0:0,0:0,0	94:1:0:0:80,80:0,0:13,14:0,0
20	40566138	.	G	T	.	PASS	NT=ref;QSS=26;QSS_NT=26;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	51:0:0:0:0,0:0,0:51,51:0,0	101:1:0:0:0,0:0,0:91,92:9,9
20	41730637	.	T	C	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1431|PTPRT|protein_coding|CODING|ENST00000373201|1|1),INTRON(MODIFIER||||1440|PTPRT|protein_coding|CODING|ENST00000373190|1|1),INTRON(MODIFIER||||1441|PTPRT|protein_coding|CODING|ENST00000373187|1|1),INTRON(MODIFIER||||1444|PTPRT|protein_coding|CODING|ENST00000373193|1|1),INTRON(MODIFIER||||1450|PTPRT|protein_coding|CODING|ENST00000356100|1|1),INTRON(MODIFIER||||1451|PTPRT|protein_coding|CODING|ENST00000373184|1|1),INTRON(MODIFIER||||1463|PTPRT|protein_coding|CODING|ENST00000373198|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:0:0:0:0,0:0,0:0,0:36,36	111:1:0:0:0,0:5,5:1,1:104,105
20	41984811	rs202178711	C	T	.	PASS	NT=ref;QSS=24;QSS_NT=24;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=41984811;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	50:2:0:0:0,0:48,53:0,0:0,0	114:4:0:0:0,0:100,105:1,1:9,11
20	42582782	.	C	T	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=CC->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER||||176|TOX2|protein_coding|CODING|ENST00000442881|1|1),INTRON(MODIFIER||||464|TOX2|protein_coding|CODING|ENST00000372999|1|1),INTRON(MODIFIER||||464|TOX2|protein_coding|CODING|ENST00000423191|1|1),INTRON(MODIFIER||||488|TOX2|protein_coding|CODING|ENST00000358131|1|1),INTRON(MODIFIER||||506|TOX2|protein_coding|CODING|ENST00000341197|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	49:0:0:0:0,0:49,49:0,0:0,0	79:0:0:0:0,0:75,76:0,0:4,4
20	46004935	.	G	A	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:0:0:0:0,0:0,0:39,40:0,0	85:3:0:0:5,5:0,0:77,80:0,0
20	46200282	.	G	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||AL021394.1|miRNA|NON_CODING|ENST00000408367||1),INTRON(MODIFIER||||1350|NCOA3|protein_coding|CODING|ENST00000341724|1|1),INTRON(MODIFIER||||1415|NCOA3|protein_coding|CODING|ENST00000371997|1|1),INTRON(MODIFIER||||1420|NCOA3|protein_coding|CODING|ENST00000340189|1|1),INTRON(MODIFIER||||1420|NCOA3|protein_coding|CODING|ENST00000372004|1|1),INTRON(MODIFIER||||1424|NCOA3|protein_coding|CODING|ENST00000371998|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	53:1:0:0:0,0:0,0:51,52:1,1	101:0:0:0:0,0:0,0:93,93:8,8
20	46200285	.	C	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||AL021394.1|miRNA|NON_CODING|ENST00000408367||1),INTRON(MODIFIER||||1350|NCOA3|protein_coding|CODING|ENST00000341724|1|1),INTRON(MODIFIER||||1415|NCOA3|protein_coding|CODING|ENST00000371997|1|1),INTRON(MODIFIER||||1420|NCOA3|protein_coding|CODING|ENST00000340189|1|1),INTRON(MODIFIER||||1420|NCOA3|protein_coding|CODING|ENST00000372004|1|1),INTRON(MODIFIER||||1424|NCOA3|protein_coding|CODING|ENST00000371998|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	55:1:0:0:0,0:53,53:0,1:1,1	102:0:0:0:0,0:95,95:0,0:7,7
20	46754867	.	G	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	49:1:0:0:1,2:1,1:46,47:0,0	103:6:0:0:9,17:0,1:88,94:0,0
20	46754951	rs73626377	C	T	.	PASS	NT=ref;QSS=27;QSS_NT=27;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=46754951;dbSNPBuildID=130;SSR=0;SAO=0;VP=050100000005000102000100;WGT=1;VC=SNV;SLO;ASP;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	59:3:0:0:0,0:56,64:0,0:0,0	93:7:0:0:0,0:79,95:0,0:7,16
20	47545193	.	A	G	.	PASS	NT=ref;QSS=23;QSS_NT=23;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1785|ARFGEF2|protein_coding|CODING|ENST00000371917|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	45:0:0:0:45,46:0,0:0,0:0,1	97:1:0:0:90,95:0,0:6,7:0,1
20	48230467	.	C	T	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	46:0:0:0:0,0:46,46:0,0:0,0	93:1:0:0:0,0:88,90:0,0:4,4
20	48613523	.	A	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	46:0:0:0:44,45:0,0:1,1:1,1	88:1:0:0:81,82:0,0:6,6:0,0
20	49688762	.	G	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:0:0:0:0,0:0,0:37,37:0,0	117:0:0:0:0,0:0,0:110,110:7,7
20	50876632	.	G	T	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP4-723E3.1|processed_transcript|NON_CODING|ENST00000454600|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	41:0:0:0:0,0:0,0:41,41:0,0	92:1:0:0:0,0:0,0:81,82:10,10
20	51125916	.	G	C	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP4-723E3.1|processed_transcript|NON_CODING|ENST00000454600|4|1),UPSTREAM(MODIFIER|||||MRPS33P4|processed_pseudogene|NON_CODING|ENST00000434892||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:1:0:0:0,0:0,0:34,35:0,0	95:0:0:0:0,0:8,8:87,87:0,0
20	53539397	.	G	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:1:0:0:0,0:0,0:28,29:0,0	124:2:0:0:0,1:7,8:115,115:0,0
20	54820908	.	T	C	.	PASS	NT=ref;QSS=25;QSS_NT=25;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER||||323|MC3R|protein_coding|CODING|ENST00000243911||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	42:0:0:0:0,0:0,0:0,0:42,42	101:0:0:0:0,0:15,15:0,0:86,87
20	55967443	.	A	G	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=EXON(MODIFIER|||||RP4-800J21.3|antisense|NON_CODING|ENST00000417346|1|1),INTRON(MODIFIER||||121|RBM38|protein_coding|CODING|ENST00000440234|1|1),INTRON(MODIFIER||||239|RBM38|protein_coding|CODING|ENST00000356208|1|1),INTRON(MODIFIER|||||RBM38|nonsense_mediated_decay|CODING|ENST00000342690|1|1),INTRON(MODIFIER|||||RBM38|nonsense_mediated_decay|CODING|ENST00000344785|1|1),START_GAINED(LOW||||158|RBM38|protein_coding|CODING|ENST00000371219|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	41:0:0:0:41,47:0,0:0,0:0,0	96:1:0:0:89,99:0,0:5,5:1,1
20	56101610	.	A	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER||||403|CTCFL|protein_coding|CODING|ENST00000502686||1),UPSTREAM(MODIFIER||||422|CTCFL|protein_coding|CODING|ENST00000539382||1),UPSTREAM(MODIFIER||||427|CTCFL|protein_coding|CODING|ENST00000422109||1),UPSTREAM(MODIFIER||||451|CTCFL|protein_coding|CODING|ENST00000426658||1),UPSTREAM(MODIFIER||||483|CTCFL|protein_coding|CODING|ENST00000432255||1),UPSTREAM(MODIFIER||||573|CTCFL|protein_coding|CODING|ENST00000422869||1),UPSTREAM(MODIFIER||||613|CTCFL|protein_coding|CODING|ENST00000429804||1),UPSTREAM(MODIFIER||||663|CTCFL|protein_coding|CODING|ENST00000243914||1),UPSTREAM(MODIFIER||||663|CTCFL|protein_coding|CODING|ENST00000371196||1),UPSTREAM(MODIFIER||||665|CTCFL|protein_coding|CODING|ENST00000433949||1),UPSTREAM(MODIFIER||||700|CTCFL|protein_coding|CODING|ENST00000423479||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	17:1:0:0:16,19:0,1:0,0:0,0	30:1:0:0:23,30:0,0:6,9:0,0
20	56174943	rs74177914	G	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||354|ZBP1|protein_coding|CODING|ENST00000395822||1),DOWNSTREAM(MODIFIER||||406|ZBP1|protein_coding|CODING|ENST00000340462||1),DOWNSTREAM(MODIFIER||||429|ZBP1|protein_coding|CODING|ENST00000371173||1),DOWNSTREAM(MODIFIER|||||ZBP1|retained_intron|CODING|ENST00000461547||1),EXON(MODIFIER|||||RP4-718J7.4|lincRNA|NON_CODING|ENST00000424850|2|1);RSPOS=56174943;dbSNPBuildID=130;SSR=16;SAO=0;VP=050100000005000102000100;WGT=1;VC=SNV;SLO;ASP;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	21:0:0:0:0,0:0,0:20,21:1,1	64:4:0:0:0,0:0,0:38,41:22,25
20	56461377	.	C	T	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:0:0:0:1,1:37,42:0,0:0,0	121:9:0:0:0,2:106,124:0,0:6,7
20	57067872	.	C	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER||||501|APCDD1L|protein_coding|CODING|ENST00000371149|1|1),INTRON(MODIFIER||||512|APCDD1L|protein_coding|CODING|ENST00000439429|2|1),INTRON(MODIFIER||||79|APCDD1L|protein_coding|CODING|ENST00000425773|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	43:2:0:0:0,0:41,43:0,0:0,1	141:2:0:0:0,1:131,133:1,1:7,7
20	58005775	.	G	T	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:0:0:0:0,0:0,0:36,37:0,0	117:2:0:0:0,0:0,0:105,107:10,10
20	58882474	.	C	G	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP5-1043L13.1|processed_transcript|NON_CODING|ENST00000421257|1|1),INTRON(MODIFIER|||||RP5-1043L13.1|processed_transcript|NON_CODING|ENST00000432910|3|1),INTRON(MODIFIER|||||RP5-1043L13.1|processed_transcript|NON_CODING|ENST00000437035|1|1),UPSTREAM(MODIFIER|||||MIR646|miRNA|NON_CODING|ENST00000385067||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	44:0:0:0:0,0:44,45:0,0:0,0	86:1:0:0:0,0:81,82:4,4:0,0
20	59676808	.	C	T	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:5:0:0:0,0:31,43:0,0:0,0	95:10:0:0:1,2:72,105:0,0:12,14
20	59951022	rs149650652	G	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||916|CDH4|protein_coding|CODING|ENST00000360469|2|1);RSPOS=59951022;dbSNPBuildID=134;SSR=0;SAO=0;VP=050000080005000002000100;GENEINFO=CDH4:1002;WGT=1;VC=SNV;INT;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:3:0:0:0,0:0,0:29,41:0,0	85:7:0:0:6,7:0,0:72,107:0,0
20	60019692	.	T	A	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=TT->AT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER||||916|CDH4|protein_coding|CODING|ENST00000360469|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	49:1:0:0:0,0:0,0:0,0:48,51	145:10:0:0:7,10:0,0:0,0:128,141
20	60019701	.	G	A	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||916|CDH4|protein_coding|CODING|ENST00000360469|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	48:5:0:0:0,0:0,0:43,50:0,0	140:19:0:0:7,10:0,0:114,134:0,0
20	60553095	.	A	G	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1085|TAF4|protein_coding|CODING|ENST00000252996|14|1),INTRON(MODIFIER||||949|TAF4|protein_coding|CODING|ENST00000436129|16|1),INTRON(MODIFIER|||||TAF4|processed_transcript|CODING|ENST00000474089|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	60:0:1:0:59,60:0,0:1,1:0,0	115:1:0:0:104,108:0,0:10,12:0,1
20	60557338	.	C	A	.	PASS	NT=ref;QSS=27;QSS_NT=27;SGT=CC->AC;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER||||1085|TAF4|protein_coding|CODING|ENST00000252996|14|1),INTRON(MODIFIER||||949|TAF4|protein_coding|CODING|ENST00000436129|16|1),INTRON(MODIFIER|||||TAF4|processed_transcript|CODING|ENST00000474089|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	52:1:0:0:0,1:51,64:0,0:0,0	109:7:3:0:15,17:87,110:0,0:0,0
20	60557345	.	A	G	.	PASS	NT=ref;QSS=27;QSS_NT=27;SGT=AA->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER||||1085|TAF4|protein_coding|CODING|ENST00000252996|14|1),INTRON(MODIFIER||||949|TAF4|protein_coding|CODING|ENST00000436129|16|1),INTRON(MODIFIER|||||TAF4|processed_transcript|CODING|ENST00000474089|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	50:1:0:0:49,56:0,1:0,1:0,0	105:8:0:0:77,90:5,6:14,17:1,1
20	60954398	.	G	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:3:0:0:0,0:0,0:32,37:0,0	99:4:0:0:0,1:0,0:87,92:8,8
20	61193141	.	G	A	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=GG->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	64:1:0:0:0,0:0,0:63,65:0,0	104:1:0:0:4,4:0,0:99,101:0,0
20	61597712	.	G	A	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||SLC17A9|processed_transcript|CODING|ENST00000487303||1),INTRON(MODIFIER||||430|SLC17A9|protein_coding|CODING|ENST00000370349|11|1),INTRON(MODIFIER||||436|SLC17A9|protein_coding|CODING|ENST00000370351|10|1),INTRON(MODIFIER|||||SLC17A9|processed_transcript|CODING|ENST00000459704|7|1),INTRON(MODIFIER|||||SLC17A9|processed_transcript|CODING|ENST00000483113|2|1),INTRON(MODIFIER|||||SLC17A9|processed_transcript|CODING|ENST00000488738|9|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:1:0:0:0,0:0,0:35,44:0,0	110:4:0:0:7,7:0,0:99,115:0,0
20	61660280	.	C	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	43:0:1:0:0,0:42,54:1,1:0,0	90:3:1:0:0,0:77,94:10,11:0,0
20	61660707	rs28620162	T	C	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||LINC00029|lincRNA|NON_CODING|ENST00000370341||1),DOWNSTREAM(MODIFIER|||||LINC00029|lincRNA|NON_CODING|ENST00000414668||1),INTERGENIC(MODIFIER||||||||||1);RSPOS=61660707;dbSNPBuildID=125;SSR=0;SAO=0;VP=050000080001040102000100;GENEINFO=LOC63930:63930;WGT=1;VC=SNV;INT;VLD;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	41:0:0:0:0,0:0,0:0,0:41,42	105:0:0:0:0,0:6,8:0,0:99,104
20	61882933	.	G	A	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||119|NKAIN4|protein_coding|CODING|ENST00000370313|1|1),INTRON(MODIFIER||||146|NKAIN4|protein_coding|CODING|ENST00000370307|1|1),INTRON(MODIFIER||||208|NKAIN4|protein_coding|CODING|ENST00000370316|1|1),INTRON(MODIFIER|||||NKAIN4|retained_intron|CODING|ENST00000486495|1|1),UPSTREAM(MODIFIER||||167|NKAIN4|protein_coding|CODING|ENST00000370317||1),UPSTREAM(MODIFIER|||||NKAIN4|processed_transcript|CODING|ENST00000466885||1),UPSTREAM(MODIFIER|||||NKAIN4|processed_transcript|CODING|ENST00000470246||1),UPSTREAM(MODIFIER|||||NKAIN4|processed_transcript|CODING|ENST00000472670||1),UPSTREAM(MODIFIER|||||NKAIN4|retained_intron|CODING|ENST00000461738||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	49:0:0:0:0,0:0,0:49,49:0,0	118:3:0:0:5,5:0,0:110,113:0,0
20	61882935	.	G	C	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||119|NKAIN4|protein_coding|CODING|ENST00000370313|1|1),INTRON(MODIFIER||||146|NKAIN4|protein_coding|CODING|ENST00000370307|1|1),INTRON(MODIFIER||||208|NKAIN4|protein_coding|CODING|ENST00000370316|1|1),INTRON(MODIFIER|||||NKAIN4|retained_intron|CODING|ENST00000486495|1|1),UPSTREAM(MODIFIER||||167|NKAIN4|protein_coding|CODING|ENST00000370317||1),UPSTREAM(MODIFIER|||||NKAIN4|processed_transcript|CODING|ENST00000466885||1),UPSTREAM(MODIFIER|||||NKAIN4|processed_transcript|CODING|ENST00000470246||1),UPSTREAM(MODIFIER|||||NKAIN4|processed_transcript|CODING|ENST00000472670||1),UPSTREAM(MODIFIER|||||NKAIN4|retained_intron|CODING|ENST00000461738||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	49:0:0:0:0,0:0,0:49,49:0,0	117:2:0:0:0,0:6,6:109,111:0,0
20	62063955	rs183214313	C	A	.	PASS	NT=ref;QSS=28;QSS_NT=28;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||393|KCNQ2|protein_coding|CODING|ENST00000344425||1),DOWNSTREAM(MODIFIER|||||KCNQ2|processed_transcript|CODING|ENST00000482957||1),INTRON(MODIFIER||||436|KCNQ2|protein_coding|CODING|ENST00000370221|8|1),INTRON(MODIFIER||||615|KCNQ2|protein_coding|CODING|ENST00000370222|8|1),INTRON(MODIFIER||||841|KCNQ2|protein_coding|CODING|ENST00000430658|8|1),INTRON(MODIFIER||||842|KCNQ2|protein_coding|CODING|ENST00000370226|8|1),INTRON(MODIFIER||||844|KCNQ2|protein_coding|CODING|ENST00000360480|8|1),INTRON(MODIFIER||||854|KCNQ2|protein_coding|CODING|ENST00000357249|8|1),INTRON(MODIFIER||||868|KCNQ2|protein_coding|CODING|ENST00000344462|8|1),INTRON(MODIFIER||||872|KCNQ2|protein_coding|CODING|ENST00000359125|8|1),INTRON(MODIFIER||||872|KCNQ2|protein_coding|CODING|ENST00000359689|8|1),INTRON(MODIFIER||||880|KCNQ2|protein_coding|CODING|ENST00000354587|8|1),INTRON(MODIFIER||||880|KCNQ2|protein_coding|CODING|ENST00000370224|8|1);RSPOS=62063955;GMAF=0.0302;dbSNPBuildID=135;SSR=0;SAO=0;VP=050000080005000014000100;GENEINFO=KCNQ2:3785;WGT=1;VC=SNV;INT;ASP;KGPhase1;KGPROD	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	62:4:0:0:0,0:56,69:1,2:1,1	129:9:0:0:7,8:113,135:0,0:0,0
20	62580082	.	A	G	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||419|UCKL1|protein_coding|CODING|ENST00000358711|1|1),INTRON(MODIFIER||||533|UCKL1|protein_coding|CODING|ENST00000369908|1|1),INTRON(MODIFIER||||548|UCKL1|protein_coding|CODING|ENST00000354216|1|1),INTRON(MODIFIER||||548|UCKL1|protein_coding|CODING|ENST00000369892|1|1),INTRON(MODIFIER||||85|UCKL1|protein_coding|CODING|ENST00000418992|1|1),INTRON(MODIFIER|||||UCKL1|processed_transcript|CODING|ENST00000483710|1|1),UPSTREAM(MODIFIER|||||UCKL1|processed_transcript|CODING|ENST00000492660||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:0:0:0:34,45:0,0:0,0:0,0	89:2:0:0:80,96:1,1:6,6:0,0
20	62833253	rs74181503	T	C	.	PASS	NT=ref;QSS=24;QSS_NT=24;SGT=TT->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER||||1121|MYT1|protein_coding|CODING|ENST00000328439|4|1),INTRON(MODIFIER||||1148|MYT1|protein_coding|CODING|ENST00000536311|4|1),INTRON(MODIFIER||||591|MYT1|protein_coding|CODING|ENST00000360149|4|1);RSPOS=62833253;GMAF=0.0751;dbSNPBuildID=130;SSR=0;SAO=0;VP=050100080001070116000100;GENEINFO=MYT1:4661;WGT=1;VC=SNV;SLO;INT;VLD;G5A;G5;GNO;KGPhase1;KGPROD;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	75:1:0:0:1,1:1,2:0,0:72,72	99:6:0:0:0,0:10,12:2,2:81,86
21	9414920	.	C	T	.	PASS	NT=ref;QSS=27;QSS_NT=27;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	92:0:0:0:0,0:91,92:0,0:1,1	344:2:0:0:0,0:328,338:0,0:14,16
21	9459871	.	G	C	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=GG->CG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	45:0:0:0:0,0:0,1:45,56:0,0	161:0:0:0:0,0:13,14:148,175:0,1
21	9489493	.	A	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:2:0:0:29,31:0,0:0,1:0,0	82:3:0:0:70,73:0,0:9,17:0,0
21	9515073	rs77964157	C	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=9515073;dbSNPBuildID=131;SSR=0;SAO=0;VP=050000000009000102000100;WGT=1;VC=SNV;CFL;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	18:1:0:0:0,0:17,19:0,0:0,0	27:0:0:0:0,0:22,22:0,0:5,6
21	9654622	.	A	T	.	PASS	NT=ref;QSS=32;QSS_NT=32;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	110:0:0:0:109,116:0,0:0,0:1,1	316:2:0:0:300,330:0,0:0,0:14,20
21	9671476	.	T	C	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	98:0:0:0:0,0:0,0:0,0:98,105	244:3:0:0:0,0:11,14:0,0:230,257
21	9700808	.	C	T	.	PASS	NT=ref;QSS=31;QSS_NT=31;SGT=CC->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	85:0:0:0:0,0:85,132:0,0:0,0	204:1:0:0:0,0:190,278:0,0:13,13
21	9748312	.	C	T	.	PASS	NT=ref;QSS=33;QSS_NT=33;SGT=CC->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	81:0:0:0:0,0:81,85:0,0:0,1	230:1:0:0:1,1:214,223:0,0:14,14
21	9748348	.	A	G	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=AA->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	58:1:0:0:57,62:0,0:0,1:0,0	190:0:0:0:177,183:1,1:12,12:0,0
21	9748365	.	T	C	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=TT->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	56:1:0:0:0,0:0,1:0,0:55,60	180:0:0:0:0,0:12,12:0,0:168,174
21	9748371	.	A	T	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=AA->AT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	53:1:0:0:52,57:0,0:0,0:0,1	171:0:0:0:159,165:0,0:0,0:12,12
21	9938088	.	A	G	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||MAFIPL|processed_transcript|NON_CODING|ENST00000416067|2|1),INTRON(MODIFIER|||||MAFIPL|unprocessed_pseudogene|NON_CODING|ENST00000400754|2|1),UPSTREAM(MODIFIER|||||CR392039.1|miRNA|NON_CODING|ENST00000459307||1),UPSTREAM(MODIFIER|||||CR392039.2|miRNA|NON_CODING|ENST00000458847||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	50:9:0:0:41,83:0,0:0,2:0,0	137:16:0:0:114,203:0,0:7,16:0,2
21	9946834	.	C	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER|||||MAFIPL|processed_transcript|NON_CODING|ENST00000416067|2|1),INTRON(MODIFIER|||||MAFIPL|unprocessed_pseudogene|NON_CODING|ENST00000400754|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	23:2:0:0:0,0:21,32:0,0:0,1	65:2:0:0:0,0:52,84:0,0:11,16
21	10139441	.	C	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	96:2:0:0:0,0:93,102:0,0:1,2	181:0:0:0:1,1:172,176:0,0:8,9
21	10172496	.	G	T	.	PASS	NT=ref;QSS=35;QSS_NT=35;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	121:2:0:0:0,0:0,0:118,123:1,1	322:4:0:0:0,0:0,0:301,324:17,18
21	10462083	.	A	G	.	PASS	NT=ref;QSS=36;QSS_NT=36;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	73:0:0:0:73,74:0,0:0,0:0,0	226:1:0:0:211,212:1,1:13,13:0,0
21	10739588	.	C	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	93:1:0:0:0,0:91,95:0,0:1,1	265:5:0:0:1,2:250,271:0,1:9,12
21	10768246	rs201217494	T	C	.	PASS	NT=ref;QSS=34;QSS_NT=34;SGT=TT->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=10768246;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	72:0:0:0:0,0:0,1:0,0:72,76	194:2:0:0:0,0:11,14:0,0:181,196
21	10838736	.	G	C	.	PASS	NT=ref;QSS=29;QSS_NT=29;SGT=GG->CG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	62:1:0:0:0,0:0,1:61,65:0,0	213:2:0:0:0,0:8,11:203,226:0,0
21	10838738	.	G	A	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=GG->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	62:1:0:0:0,2:0,0:61,63:0,0	214:2:0:0:11,25:0,1:201,210:0,0
21	10851485	.	T	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=TT->AT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	45:3:11:0:0,3:0,2:0,1:42,71	116:12:21:0:8,17:0,1:0,0:96,197
21	10851960	rs201591528	G	A	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=10851960;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	59:1:26:0:1,1:0,0:57,96:0,0	168:3:86:0:12,13:0,0:153,280:0,0
21	10852288	.	G	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->GT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	80:2:0:0:0,0:0,0:78,83:0,2	226:12:0:0:1,1:0,0:200,209:13,20
21	11130715	rs75581388	A	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=11130715;dbSNPBuildID=131;SSR=0;SAO=0;VP=050000000001040102000100;WGT=1;VC=SNV;VLD;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	89:1:0:0:87,100:0,0:1,1:0,0	221:4:0:0:208,226:1,2:8,10:0,0
21	14422427	.	C	T	.	PASS	NT=ref;QSS=34;QSS_NT=34;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||ANKRD30BP2|processed_transcript|NON_CODING|ENST00000507941||1),DOWNSTREAM(MODIFIER|||||U6|snRNA|NON_CODING|ENST00000384369||1),INTRON(MODIFIER|||||ANKRD30BP2|processed_transcript|NON_CODING|ENST00000471407|3|1),INTRON(MODIFIER|||||ANKRD30BP2|retained_intron|NON_CODING|ENST00000447861|4|1),INTRON(MODIFIER|||||ANKRD30BP2|transcribed_unprocessed_pseudogene|NON_CODING|ENST00000435744|6|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	71:1:0:0:0,0:69,71:1,1:0,0	219:1:0:0:2,2:205,213:0,0:11,16
21	14442043	.	A	T	.	PASS	NT=ref;QSS=28;QSS_NT=28;SGT=AA->AT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=DOWNSTREAM(MODIFIER|||||ANKRD30BP2|transcribed_unprocessed_pseudogene|NON_CODING|ENST00000435744||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	71:0:0:0:71,71:0,0:0,0:0,1	196:4:0:0:182,189:0,0:1,1:9,10
21	14528477	.	A	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	74:0:0:0:74,83:0,1:0,0:0,0	152:2:0:0:142,190:8,19:0,0:0,0
21	14803779	.	C	A	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||ANKRD30BP1|unprocessed_pseudogene|NON_CODING|ENST00000451052||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:1:0:0:0,0:39,41:0,0:0,0	88:4:0:0:6,11:78,84:0,0:0,0
21	14905875	.	A	G	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||SNX19P1|processed_pseudogene|NON_CODING|ENST00000444901||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:0:0:0:35,39:0,0:0,0:0,0	68:0:0:0:59,71:0,0:9,11:0,0
21	14924360	rs202183670	G	T	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=GG->GT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER|||||AP001465.5|lincRNA|NON_CODING|ENST00000427446|2|1);RSPOS=14924360;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	44:1:0:0:0,0:0,0:43,45:0,1	101:0:0:0:0,0:0,0:94,95:7,10
21	15348465	rs191285344	T	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=TT->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER|||||ANKRD20A11P|processed_transcript|NON_CODING|ENST00000344693|1|1),INTRON(MODIFIER|||||ANKRD20A11P|transcribed_unprocessed_pseudogene|NON_CODING|ENST00000451663|1|1),UPSTREAM(MODIFIER|||||ANKRD20A11P|processed_transcript|NON_CODING|ENST00000429521||1);RSPOS=15348465;dbSNPBuildID=135;SSR=0;SAO=0;VP=050000080005000002000100;GENEINFO=ANKRD20A11P:391267;WGT=1;VC=SNV;INT;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:1:0:0:0,0:0,1:0,0:39,39	99:2:0:0:0,0:8,16:0,0:89,93
21	15348479	rs185768543	A	T	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||ANKRD20A11P|processed_transcript|NON_CODING|ENST00000344693|1|1),INTRON(MODIFIER|||||ANKRD20A11P|transcribed_unprocessed_pseudogene|NON_CODING|ENST00000451663|1|1),UPSTREAM(MODIFIER|||||ANKRD20A11P|processed_transcript|NON_CODING|ENST00000429521||1);RSPOS=15348479;dbSNPBuildID=135;SSR=0;SAO=0;VP=050000080005000002000100;GENEINFO=ANKRD20A11P:391267;WGT=1;VC=SNV;INT;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	42:0:0:0:42,42:0,0:0,1:0,0	96:2:0:0:88,92:0,0:0,0:6,10
21	16214133	.	A	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||AF127936.7|processed_transcript|NON_CODING|ENST00000412426|3|1),INTRON(MODIFIER|||||AF127936.7|processed_transcript|NON_CODING|ENST00000432230|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:3:0:0:34,36:1,2:1,1:0,0	75:9:0:0:53,57:1,5:11,12:1,2
21	16300077	rs199983867	G	A	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=GG->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER|||||AF127577.8|antisense|NON_CODING|ENST00000430391|1|1);RSPOS=16300077;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	43:0:0:0:0,1:0,0:43,62:0,0	90:1:0:0:7,8:0,0:81,126:1,1
21	16642918	.	G	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:1:0:0:0,0:0,0:30,31:0,0	132:0:0:0:0,0:0,0:123,123:9,9
21	16837113	.	T	G	.	PASS	NT=ref;QSS=23;QSS_NT=23;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:0:0:0:0,0:0,0:1,1:36,37	82:1:0:0:0,0:0,0:16,17:65,65
21	18321655	.	G	A	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:0:0:0:0,0:0,0:39,39:0,0	108:1:0:0:5,5:0,0:102,103:0,0
21	19788607	.	A	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||226|TMPRSS15|protein_coding|CODING|ENST00000422787|1|1),INTRON(MODIFIER|||||TMPRSS15|processed_transcript|CODING|ENST00000474775|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:1:0:0:29,29:0,1:0,0:0,0	103:0:0:0:97,97:0,0:6,6:0,0
21	20131413	.	C	T	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||AL109763.2|processed_transcript|NON_CODING|ENST00000355189|1|1),INTRON(MODIFIER|||||AL109763.2|processed_transcript|NON_CODING|ENST00000437492|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	45:1:0:0:0,0:44,45:0,0:0,0	95:4:0:0:0,0:85,92:0,0:6,6
21	20278366	.	C	A	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:0:0:0:0,0:38,38:0,0:0,0	96:2:0:0:6,6:88,90:0,0:0,0
21	21800004	.	T	A	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||RPS3AP1|processed_pseudogene|NON_CODING|ENST00000413190||1),INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||KRT18P2|processed_pseudogene|NON_CODING|ENST00000447938||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:0:0:0:0,0:0,0:0,0:37,38	80:0:0:0:9,9:0,0:0,0:71,71
21	22081738	.	T	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:0:0:0:0,0:0,0:0,0:30,30	99:7:0:0:9,9:0,0:0,0:83,92
21	22273428	.	G	A	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	44:1:0:0:0,0:0,1:43,43:0,0	101:2:0:0:10,11:0,0:88,89:1,1
21	22654508	.	C	T	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||424|NCAM2|protein_coding|CODING|ENST00000535285|3|1),INTRON(MODIFIER||||695|NCAM2|protein_coding|CODING|ENST00000284894|1|1),INTRON(MODIFIER||||837|NCAM2|protein_coding|CODING|ENST00000400546|2|1),INTRON(MODIFIER|||||NCAM2|processed_transcript|CODING|ENST00000486367|2|1),INTRON(MODIFIER|||||NCAM2|processed_transcript|CODING|ENST00000508782|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:0:0:0:0,0:40,41:0,0:0,0	112:1:0:0:0,0:102,103:0,0:9,9
21	23029300	.	G	C	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=EXON(MODIFIER|||||AF241725.6|lincRNA|NON_CODING|ENST00000416182|4|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	43:0:0:0:0,0:0,0:43,43:0,0	89:0:0:0:0,0:4,4:85,86:0,0
21	23272181	.	A	G	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:2:0:0:38,40:0,0:0,0:0,0	99:4:0:0:88,92:0,0:7,9:0,0
21	23857335	.	A	G	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:0:0:0:35,36:0,0:0,0:0,0	86:2:0:0:77,79:0,0:7,7:0,0
21	24099126	.	G	T	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	41:2:0:0:0,0:0,0:39,41:0,0	112:0:0:0:0,0:0,0:102,102:10,10
21	24328460	.	A	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	26:0:0:0:26,26:0,0:0,0:0,0	107:1:0:0:92,95:14,15:0,0:0,0
21	24452133	.	A	T	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||AP001255.2|processed_transcript|NON_CODING|ENST00000421604|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:0:0:0:37,37:0,0:0,0:0,0	90:0:0:0:80,80:0,0:0,0:10,10
21	24874485	rs201684803	A	G	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=24874485;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:0:0:0:34,34:0,0:0,0:0,0	83:1:0:0:75,76:0,0:7,7:0,0
21	24923372	.	T	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:0:0:0:0,0:0,0:0,0:30,30	97:0:0:0:0,0:9,9:0,0:88,88
21	26044536	.	C	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:0:0:0:0,0:34,34:0,0:0,0	98:1:0:0:0,0:93,94:0,0:4,4
21	26176847	.	G	A	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:2:0:0:0,0:0,1:35,36:0,0	114:1:0:0:8,8:0,0:104,105:1,1
21	29710989	.	A	G	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:0:0:0:32,32:0,0:0,0:0,0	98:1:0:0:87,88:0,0:10,11:0,0
21	30287116	.	C	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:0:0:0:0,0:35,35:0,0:0,0	102:1:0:0:0,0:92,92:0,0:9,10
21	31725321	.	C	A	.	PASS	NT=ref;QSS=24;QSS_NT=24;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||KRTAP13-6P|unprocessed_pseudogene|NON_CODING|ENST00000508999||1),INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER||||65|KRTAP23-1|protein_coding|CODING|ENST00000334160||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	47:0:0:0:0,0:47,47:0,0:0,0	93:0:0:0:5,5:88,88:0,0:0,0
21	31855328	.	G	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||52|KRTAP19-2|protein_coding|CODING|ENST00000334055||1),INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER||||90|KRTAP19-1|protein_coding|CODING|ENST00000390689||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:1:0:0:0,0:0,0:33,34:0,0	104:1:0:0:0,0:0,0:92,93:11,11
21	32114352	.	C	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=DOWNSTREAM(MODIFIER||||83|KRTAP21-2|protein_coding|CODING|ENST00000333892||1),EXON(MODIFIER|||||KRTAP21-4P|unprocessed_pseudogene|NON_CODING|ENST00000454921|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	101:18:2:0:0,0:82,114:0,0:1,2	267:60:1:0:0,1:195,292:0,0:12,24
21	34694757	.	G	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER||||135|IFNAR1|protein_coding|CODING|ENST00000442071||1),UPSTREAM(MODIFIER||||488|IFNAR1|protein_coding|CODING|ENST00000416947||1),UPSTREAM(MODIFIER||||496|IFNAR1|protein_coding|CODING|ENST00000442357||1),UPSTREAM(MODIFIER||||557|IFNAR1|protein_coding|CODING|ENST00000270139||1),UPSTREAM(MODIFIER|||||IFNAR1|processed_transcript|CODING|ENST00000493503||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:3:0:0:1,2:0,1:32,60:1,1	113:6:14:0:3,5:10,17:94,174:0,2
21	36302586	rs185734640	T	A	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||139|RUNX1|protein_coding|CODING|ENST00000455571|2|1),INTRON(MODIFIER||||191|RUNX1|protein_coding|CODING|ENST00000486278|2|1),INTRON(MODIFIER||||31|RUNX1|protein_coding|CODING|ENST00000416754|2|1),INTRON(MODIFIER||||480|RUNX1|protein_coding|CODING|ENST00000300305|1|1),INTRON(MODIFIER||||480|RUNX1|protein_coding|CODING|ENST00000437180|2|1),INTRON(MODIFIER|||||RUNX1|processed_transcript|CODING|ENST00000475045|9|1),INTRON(MODIFIER|||||RUNX1|processed_transcript|CODING|ENST00000482318|2|1);RSPOS=36302586;GMAF=0.0366;dbSNPBuildID=135;SSR=0;SAO=0;VP=050000080005000014000100;GENEINFO=RUNX1:861;WGT=1;VC=SNV;INT;ASP;KGPhase1;KGPROD	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:1:0:0:0,0:0,0:0,0:36,38	111:0:0:0:10,10:0,0:0,0:101,101
21	39424057	rs146365228	A	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=DOWNSTREAM(MODIFIER||||118|DSCR4|protein_coding|CODING|ENST00000328264||1),INTRON(MODIFIER||||127|DSCR4|protein_coding|CODING|ENST00000398948|2|1);RSPOS=39424057;GMAF=0.0027;dbSNPBuildID=134;SSR=0;SAO=0;VP=050000000005000014000100;WGT=1;VC=SNV;ASP;KGPhase1;KGPROD	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	41:0:0:0:41,41:0,0:0,1:0,0	132:0:0:0:125,130:0,0:7,7:0,0
21	40131701	.	A	C	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||LINC00114|lincRNA|NON_CODING|ENST00000442549|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:0:0:0:39,39:0,0:0,0:0,0	87:1:0:0:80,81:6,6:0,0:0,0
21	40449464	.	G	T	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	41:0:0:0:0,0:0,0:41,42:0,0	109:1:0:0:0,0:0,0:102,103:6,6
21	43226519	.	C	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1141|PRDM15|protein_coding|CODING|ENST00000447207|20|1),INTRON(MODIFIER||||1161|PRDM15|protein_coding|CODING|ENST00000538201|22|1),INTRON(MODIFIER||||1178|PRDM15|protein_coding|CODING|ENST00000398548|21|1),INTRON(MODIFIER||||1198|PRDM15|protein_coding|CODING|ENST00000422911|22|1),INTRON(MODIFIER||||1507|PRDM15|protein_coding|CODING|ENST00000269844|28|1),INTRON(MODIFIER|||||PRDM15|nonsense_mediated_decay|CODING|ENST00000433067|28|1),INTRON(MODIFIER|||||PRDM15|nonsense_mediated_decay|CODING|ENST00000441787|21|1),INTRON(MODIFIER|||||PRDM15|nonsense_mediated_decay|CODING|ENST00000447016|21|1),INTRON(MODIFIER|||||PRDM15|nonsense_mediated_decay|CODING|ENST00000449395|22|1),INTRON(MODIFIER|||||PRDM15|processed_transcript|CODING|ENST00000470586|1|1),INTRON(MODIFIER|||||PRDM15|processed_transcript|CODING|ENST00000495217|4|1),INTRON(MODIFIER|||||PRDM15|retained_intron|CODING|ENST00000486812|1|1),UPSTREAM(MODIFIER|||||PRDM15|processed_transcript|CODING|ENST00000465955||1),UPSTREAM(MODIFIER|||||PRDM15|processed_transcript|CODING|ENST00000477633||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	23:4:0:0:0,1:19,78:0,0:0,1	54:12:3:0:0,4:34,165:0,0:8,16
21	43990270	.	C	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||533|SLC37A1|protein_coding|CODING|ENST00000352133|17|1),INTRON(MODIFIER||||533|SLC37A1|protein_coding|CODING|ENST00000398341|18|1),INTRON(MODIFIER|||||SLC37A1|processed_transcript|CODING|ENST00000496416|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:0:0:0:0,0:31,31:0,0:0,0	63:4:0:0:0,0:53,61:0,1:6,8
21	44000031	.	C	T	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||SLC37A1|processed_transcript|CODING|ENST00000496416||1),INTRON(MODIFIER||||533|SLC37A1|protein_coding|CODING|ENST00000352133|19|1),INTRON(MODIFIER||||533|SLC37A1|protein_coding|CODING|ENST00000398341|20|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:0:0:0:0,0:40,40:0,0:0,0	98:3:0:0:0,2:84,86:0,0:11,11
21	45922714	.	G	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER||||669|TSPEAR|protein_coding|CODING|ENST00000323084|11|1),UPSTREAM(MODIFIER|||||TSPEAR-AS1|antisense|NON_CODING|ENST00000451035||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	47:5:0:0:0,1:0,0:42,50:0,0	97:1:0:0:5,6:0,0:91,97:0,0
21	46348938	rs9980720	A	T	.	PASS	NT=ref;QSS=24;QSS_NT=24;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||218|C21orf67|protein_coding|CODING|ENST00000397841||1),DOWNSTREAM(MODIFIER|||||ITGB2-AS1|antisense|NON_CODING|ENST00000429132||1),EXON(MODIFIER|||||ITGB2-AS1|antisense|NON_CODING|ENST00000441379|4|1),INTRON(MODIFIER||||48|ITGB2|protein_coding|CODING|ENST00000521995|1|1),UPSTREAM(MODIFIER||||119|ITGB2|protein_coding|CODING|ENST00000517563||1),UPSTREAM(MODIFIER||||769|ITGB2|protein_coding|CODING|ENST00000355153||1),UPSTREAM(MODIFIER||||769|ITGB2|protein_coding|CODING|ENST00000397850||1);RSPOS=46348938;dbSNPBuildID=119;SSR=0;SAO=0;VP=050000000201000102000100;GENEINFO=LOC100505746:100505746;WGT=1;VC=SNV;REF;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	50:1:0:0:47,49:0,0:2,2:0,0	91:3:0:0:81,85:1,2:0,1:6,6
21	46689099	.	C	T	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||POFUT2|processed_transcript|CODING|ENST00000468360||1),DOWNSTREAM(MODIFIER|||||POFUT2|processed_transcript|CODING|ENST00000493524||1),INTRON(MODIFIER||||424|POFUT2|protein_coding|CODING|ENST00000331343|7|1),INTRON(MODIFIER||||429|POFUT2|protein_coding|CODING|ENST00000349485|7|1),INTRON(MODIFIER|||||POFUT2|nonsense_mediated_decay|CODING|ENST00000334538|7|1),INTRON(MODIFIER|||||POFUT2|processed_transcript|CODING|ENST00000460932|1|1),INTRON(MODIFIER|||||POFUT2|processed_transcript|CODING|ENST00000463917|1|1),INTRON(MODIFIER|||||POFUT2|processed_transcript|CODING|ENST00000471540|6|1),UPSTREAM(MODIFIER|||||POFUT2|processed_transcript|CODING|ENST00000485190||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	57:1:0:0:0,0:54,58:1,1:1,1	92:5:0:0:0,0:79,107:1,2:7,8
21	46727749	rs8129906	A	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||LINC00315|lincRNA|NON_CODING|ENST00000441947||1);RSPOS=46727749;dbSNPBuildID=116;SSR=0;SAO=0;VP=050000000001040002000100;WGT=1;VC=SNV;VLD;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	50:2:0:0:48,51:0,0:0,1:0,0	117:8:0:0:103,111:0,1:6,8:0,0
21	46947708	rs58287256	G	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||153|SLC19A1|protein_coding|CODING|ENST00000443742||1),DOWNSTREAM(MODIFIER||||181|SLC19A1|protein_coding|CODING|ENST00000427839||1),DOWNSTREAM(MODIFIER|||||SLC19A1|processed_transcript|CODING|ENST00000477688||1),INTRON(MODIFIER||||489|SLC19A1|protein_coding|CODING|ENST00000380010|4|1),INTRON(MODIFIER||||545|SLC19A1|protein_coding|CODING|ENST00000567670|4|1),INTRON(MODIFIER||||551|SLC19A1|protein_coding|CODING|ENST00000485649|3|1),INTRON(MODIFIER||||591|SLC19A1|protein_coding|CODING|ENST00000311124|4|1);RSPOS=46947708;GMAF=0.0041;dbSNPBuildID=129;SSR=0;SAO=0;VP=050000080001040016000100;GENEINFO=SLC19A1:6573;WGT=1;VC=SNV;INT;VLD;KGPhase1;KGPROD;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	48:1:0:0:1,1:0,0:46,49:0,0	107:2:0:0:5,5:2,2:98,106:0,0
21	47029938	.	T	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:0:0:0:0,0:0,0:0,0:32,34	93:3:0:0:0,0:7,8:1,1:82,86
21	47217993	.	A	G	.	PASS	NT=ref;QSS=27;QSS_NT=27;SGT=AA->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER||||371|PCBP3|protein_coding|CODING|ENST00000400314|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	57:1:0:0:56,73:0,0:0,1:0,0	131:9:0:0:116,157:0,0:6,18:0,0
21	47327152	.	G	A	.	PASS	NT=ref;QSS=34;QSS_NT=34;SGT=GG->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER||||322|PCBP3|protein_coding|CODING|ENST00000400305|4|1),INTRON(MODIFIER||||345|PCBP3|protein_coding|CODING|ENST00000400308|5|1),INTRON(MODIFIER||||351|PCBP3|protein_coding|CODING|ENST00000400310|6|1),INTRON(MODIFIER||||361|PCBP3|protein_coding|CODING|ENST00000400304|4|1),INTRON(MODIFIER||||370|PCBP3|protein_coding|CODING|ENST00000400309|5|1),INTRON(MODIFIER||||371|PCBP3|protein_coding|CODING|ENST00000400314|7|1),INTRON(MODIFIER||||371|PCBP3|protein_coding|CODING|ENST00000449640|5|1),INTRON(MODIFIER|||||PCBP3|processed_transcript|CODING|ENST00000468429|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	54:0:0:0:0,0:0,0:54,54:0,0	111:1:0:0:18,18:0,0:92,93:0,0
21	47479804	.	C	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||AP001476.3|lincRNA|NON_CODING|ENST00000435738||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:3:0:0:0,0:36,39:0,1:0,0	99:6:0:0:0,0:81,88:1,2:11,12
22	16150533	.	T	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||AP000525.8|transcribed_processed_pseudogene|NON_CODING|ENST00000456786||1),EXON(MODIFIER|||||AP000525.8|processed_transcript|NON_CODING|ENST00000413768|8|1),EXON(MODIFIER|||||AP000525.8|processed_transcript|NON_CODING|ENST00000437781|8|1),EXON(MODIFIER|||||AP000525.8|processed_transcript|NON_CODING|ENST00000447898|4|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	27:0:0:0:0,0:0,0:0,0:27,28	79:0:0:0:0,0:9,10:0,0:70,71
22	16232841	.	A	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AC;SOMATIC;TQSS=2;TQSS_NT=2;EFF=DOWNSTREAM(MODIFIER|||||GRAMD4P2|processed_pseudogene|NON_CODING|ENST00000423297||1),INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||LA16c-83F12.6|lincRNA|NON_CODING|ENST00000453395||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	55:0:0:0:55,63:0,0:0,0:0,0	166:2:0:0:156,191:8,8:0,0:0,0
22	16287451	.	G	C	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=EXON(MODIFIER|||||POTEH|nonsense_mediated_decay|CODING|ENST00000452800|1|1),NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|tgC/tgG|C145W|545|POTEH|protein_coding|CODING|ENST00000343518|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:1:0:0:0,0:0,0:39,50:0,0	113:0:0:0:0,0:8,8:105,114:0,0
22	16325361	rs75750291	C	T	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=16325361;dbSNPBuildID=131;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:0:0:0:0,0:38,45:0,0:0,0	126:2:0:0:0,1:114,133:0,0:10,13
22	16326632	rs201107988	T	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=16326632;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	23:0:0:0:0,0:0,0:0,0:23,27	57:0:0:0:0,0:8,9:0,0:49,55
22	16366883	.	G	A	.	PASS	NT=ref;QSS=23;QSS_NT=23;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||LA16c-2F2.5|unprocessed_pseudogene|NON_CODING|ENST00000440999||1),DOWNSTREAM(MODIFIER|||||NEK2P2|processed_pseudogene|NON_CODING|ENST00000438441||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:3:0:0:0,0:0,0:33,44:0,0	93:4:0:0:14,20:0,0:74,102:1,1
22	16444659	rs61969423	G	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||326|OR11H1|protein_coding|CODING|ENST00000252835||1),INTERGENIC(MODIFIER||||||||||1);RSPOS=16444659;dbSNPBuildID=129;SSR=0;SAO=0;VP=050100000001000102000100;WGT=1;VC=SNV;SLO;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:0:0:0:0,0:0,0:39,44:0,0	103:1:0:0:1,2:0,0:94,97:7,9
22	16541780	.	G	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	17:0:0:0:0,1:0,0:17,19:0,0	51:1:0:0:13,23:0,0:36,42:1,1
22	16575143	.	G	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||AP000539.1|miRNA|NON_CODING|ENST00000584802||1),DOWNSTREAM(MODIFIER|||||AP000539.2|miRNA|NON_CODING|ENST00000581323||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	41:2:0:0:0,0:0,1:39,46:0,0	100:1:0:0:7,7:0,0:92,102:0,0
22	16861824	.	G	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	58:13:0:0:1,3:0,1:44,111:0,4	156:50:0:0:0,16:0,11:100,313:6,19
22	16912026	.	G	A	.	PASS	NT=ref;QSS=31;QSS_NT=31;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||SLC9B1P4|unprocessed_pseudogene|NON_CODING|ENST00000421957|8|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	70:1:0:0:0,1:0,0:69,80:0,0	211:0:0:0:10,15:0,0:201,230:0,0
22	16913921	.	A	C	.	PASS	NT=ref;QSS=27;QSS_NT=27;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||SLC9B1P4|unprocessed_pseudogene|NON_CODING|ENST00000421957|8|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	56:0:0:0:56,64:0,0:0,0:0,0	137:1:0:0:130,147:6,8:0,0:0,0
22	16916206	.	G	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER|||||SLC9B1P4|unprocessed_pseudogene|NON_CODING|ENST00000421957|6|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:0:0:0:0,0:0,0:39,44:0,0	116:2:0:0:5,5:1,1:108,120:0,0
22	16920815	.	C	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||SLC9B1P4|unprocessed_pseudogene|NON_CODING|ENST00000421957|4|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:0:0:0:0,0:38,43:0,0:0,0	115:0:0:0:0,0:108,122:0,0:7,10
22	16939893	.	A	G	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=AA->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER|||||SLC9B1P4|unprocessed_pseudogene|NON_CODING|ENST00000421957|4|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	51:1:0:0:50,51:0,0:0,1:0,0	120:4:0:0:109,123:0,0:7,13:0,0
22	16948764	.	G	T	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=GG->GT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER|||||SLC9B1P4|unprocessed_pseudogene|NON_CODING|ENST00000421957|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	45:0:0:0:0,0:0,0:45,47:0,1	122:5:0:0:0,1:0,0:105,110:12,18
22	16953635	rs77195219	A	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=EXON(MODIFIER|||||SLC9B1P4|unprocessed_pseudogene|NON_CODING|ENST00000421957|3|1);RSPOS=16953635;dbSNPBuildID=131;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:1:0:0:30,31:0,0:0,0:0,0	113:2:0:0:106,109:0,0:5,6:0,0
22	16953681	.	A	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=EXON(MODIFIER|||||SLC9B1P4|unprocessed_pseudogene|NON_CODING|ENST00000421957|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:0:0:0:33,35:0,0:0,0:0,0	120:3:0:0:108,120:0,0:0,0:9,12
22	17004532	.	T	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	41:1:0:0:0,0:0,1:0,0:40,41	88:2:0:0:0,0:5,14:0,0:81,84
22	17004606	.	C	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->AC;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	48:0:0:0:0,2:48,49:0,0:0,0	109:0:0:0:12,20:97,111:0,0:0,0
22	17237963	.	C	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	101:1:0:0:0,0:100,109:0,0:0,1	224:3:0:0:0,0:214,233:0,0:7,10
22	17357753	.	C	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=EXON(MODIFIER|||||AC007064.25|processed_pseudogene|NON_CODING|ENST00000412238|1|1),UPSTREAM(MODIFIER|||||MTND1P17|processed_pseudogene|NON_CODING|ENST00000448961||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:0:0:0:0,0:29,29:0,0:0,1	105:2:0:0:0,0:91,91:0,1:12,19
22	17628679	.	C	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||CECR5|processed_transcript|CODING|ENST00000463033||1),DOWNSTREAM(MODIFIER|||||CECR5|processed_transcript|CODING|ENST00000480451||1),INTRON(MODIFIER||||223|CECR5|protein_coding|CODING|ENST00000399852|1|1),INTRON(MODIFIER||||393|CECR5|protein_coding|CODING|ENST00000155674|3|1),INTRON(MODIFIER||||423|CECR5|protein_coding|CODING|ENST00000336737|3|1),UPSTREAM(MODIFIER|||||CECR5|retained_intron|CODING|ENST00000477157||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	68:3:0:0:2,2:63,67:0,1:0,0	103:7:0:0:6,9:90,97:0,0:0,0
22	17788361	rs200483789	G	A	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=GG->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=17788361;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:0:0:0:0,0:0,0:31,32:0,0	59:2:0:0:9,9:0,0:48,54:0,0
22	18236701	rs5992811	T	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||137|BID|protein_coding|CODING|ENST00000342111|1|1),INTRON(MODIFIER||||195|BID|protein_coding|CODING|ENST00000399774|1|1),INTRON(MODIFIER||||195|BID|protein_coding|CODING|ENST00000551952|1|1),INTRON(MODIFIER||||241|BID|protein_coding|CODING|ENST00000317361|1|1),INTRON(MODIFIER||||99|BID|protein_coding|CODING|ENST00000399765|1|1),INTRON(MODIFIER||||99|BID|protein_coding|CODING|ENST00000399767|1|1),INTRON(MODIFIER|||||BID|processed_transcript|CODING|ENST00000473439|1|1),INTRON(MODIFIER|||||BID|processed_transcript|CODING|ENST00000552886|1|1),INTRON(MODIFIER|||||BID|retained_intron|CODING|ENST00000550946|1|1);RSPOS=18236701;dbSNPBuildID=114;SSR=0;SAO=0;VP=050000080001000002000100;GENEINFO=BID:637;WGT=1;VC=SNV;INT;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	48:3:0:0:0,0:1,1:0,1:44,46	126:1:0:0:0,0:16,18:0,0:109,109
22	19224298	.	C	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||AC000081.2|processed_pseudogene|NON_CODING|ENST00000433141||1),INTRON(MODIFIER||||1583|CLTCL1|protein_coding|CODING|ENST00000353891|5|1),INTRON(MODIFIER||||1640|CLTCL1|protein_coding|CODING|ENST00000263200|5|1),INTRON(MODIFIER||||1640|CLTCL1|protein_coding|CODING|ENST00000427926|5|1),INTRON(MODIFIER|||||CLTCL1|nonsense_mediated_decay|CODING|ENST00000505027|5|1),INTRON(MODIFIER|||||CLTCL1|retained_intron|CODING|ENST00000413132|5|1),UPSTREAM(MODIFIER|||||CLTCL1|retained_intron|CODING|ENST00000540896||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:1:0:0:1,1:34,35:0,0:0,0	90:1:0:0:0,0:79,80:0,0:10,10
22	19883498	.	C	T	.	PASS	NT=ref;QSS=23;QSS_NT=23;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||338|TXNRD2|protein_coding|CODING|ENST00000334363|10|1),INTRON(MODIFIER||||492|TXNRD2|protein_coding|CODING|ENST00000542719|10|1),INTRON(MODIFIER||||494|TXNRD2|protein_coding|CODING|ENST00000400518|10|1),INTRON(MODIFIER||||501|TXNRD2|protein_coding|CODING|ENST00000400525|9|1),INTRON(MODIFIER||||521|TXNRD2|protein_coding|CODING|ENST00000535882|10|1),INTRON(MODIFIER||||523|TXNRD2|protein_coding|CODING|ENST00000400519|10|1),INTRON(MODIFIER||||524|TXNRD2|protein_coding|CODING|ENST00000400521|10|1),INTRON(MODIFIER|||||TXNRD2|processed_transcript|CODING|ENST00000471149|9|1),INTRON(MODIFIER|||||TXNRD2|processed_transcript|CODING|ENST00000474308|9|1),INTRON(MODIFIER|||||TXNRD2|processed_transcript|CODING|ENST00000475995|1|1),INTRON(MODIFIER|||||TXNRD2|processed_transcript|CODING|ENST00000491939|10|1),INTRON(MODIFIER|||||TXNRD2|processed_transcript|CODING|ENST00000492802|9|1),INTRON(MODIFIER|||||TXNRD2|processed_transcript|CODING|ENST00000496545|9|1),INTRON(MODIFIER|||||TXNRD2|retained_intron|CODING|ENST00000494454|5|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	46:0:0:0:0,0:46,46:0,0:0,0	99:0:0:0:0,0:92,94:0,0:7,8
22	20179181	.	G	A	.	PASS	NT=ref;QSS=23;QSS_NT=23;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	45:0:0:0:0,0:0,0:45,45:0,0	81:0:0:0:6,6:0,0:75,76:0,0
22	20652236	.	A	G	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||AC011718.2|lincRNA|NON_CODING|ENST00000412656|4|1),INTRON(MODIFIER|||||AC011718.2|lincRNA|NON_CODING|ENST00000414550|3|1),INTRON(MODIFIER|||||AC011718.2|lincRNA|NON_CODING|ENST00000428139|3|1),INTRON(MODIFIER|||||AC011718.2|lincRNA|NON_CODING|ENST00000577456|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	17:0:0:0:17,21:0,0:0,0:0,0	46:1:0:0:34,39:0,1:11,11:0,0
22	20710421	.	T	G	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=TT->GT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=DOWNSTREAM(MODIFIER||||82|AC007731.1|protein_coding|CODING|ENST00000583722||1),INTRON(MODIFIER||||356|USP41|protein_coding|CODING|ENST00000454608|12|1),INTRON(MODIFIER|||||USP41|processed_transcript|CODING|ENST00000486536|7|1),NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|cTa/cGa|L718R|905|AC007731.1|protein_coding|CODING|ENST00000434783|8|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	48:2:0:0:2,3:1,1:0,1:43,49	69:3:0:0:0,0:0,0:8,9:58,65
22	21395240	.	T	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||P2RX6P|unprocessed_pseudogene|NON_CODING|ENST00000382931||1),DOWNSTREAM(MODIFIER|||||P2RX6P|unprocessed_pseudogene|NON_CODING|ENST00000450626||1),INTRON(MODIFIER|||||AC002472.11|antisense|NON_CODING|ENST00000450652|1|1),INTRON(MODIFIER|||||P2RX6P|processed_transcript|NON_CODING|ENST00000439119|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:2:0:0:0,0:0,0:0,0:35,37	69:2:0:0:0,0:0,0:7,9:60,62
22	21683298	rs200448351	A	G	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||LINC00281|lincRNA|NON_CODING|ENST00000416615||1),UPSTREAM(MODIFIER|||||LINC00281|lincRNA|NON_CODING|ENST00000431488||1),UPSTREAM(MODIFIER|||||LINC00281|lincRNA|NON_CODING|ENST00000447720||1),UPSTREAM(MODIFIER|||||LINC00281|lincRNA|NON_CODING|ENST00000451574||1),UPSTREAM(MODIFIER|||||LINC00281|lincRNA|NON_CODING|ENST00000452952||1),UPSTREAM(MODIFIER|||||LINC00281|lincRNA|NON_CODING|ENST00000453273||1);RSPOS=21683298;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:0:0:0:33,36:0,0:0,0:0,0	64:0:0:0:59,61:0,0:5,7:0,0
22	21683359	rs117873826	A	T	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||LINC00281|lincRNA|NON_CODING|ENST00000416615||1),UPSTREAM(MODIFIER|||||LINC00281|lincRNA|NON_CODING|ENST00000431488||1),UPSTREAM(MODIFIER|||||LINC00281|lincRNA|NON_CODING|ENST00000447720||1),UPSTREAM(MODIFIER|||||LINC00281|lincRNA|NON_CODING|ENST00000451574||1),UPSTREAM(MODIFIER|||||LINC00281|lincRNA|NON_CODING|ENST00000452952||1),UPSTREAM(MODIFIER|||||LINC00281|lincRNA|NON_CODING|ENST00000453273||1);RSPOS=21683359;dbSNPBuildID=134;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	22:0:0:0:22,24:0,0:0,0:0,0	42:0:0:0:34,35:0,0:0,0:8,10
22	21745147	.	A	G	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=AA->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=DOWNSTREAM(MODIFIER||||1545|RIMBP3B|protein_coding|CODING|ENST00000357029||1),DOWNSTREAM(MODIFIER||||1639|RIMBP3B|protein_coding|CODING|ENST00000434111||1),DOWNSTREAM(MODIFIER|||||7SK|misc_RNA|NON_CODING|ENST00000363187||1),INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||SCARNA17|snoRNA|NON_CODING|ENST00000516211||1),UPSTREAM(MODIFIER|||||SCARNA18|snoRNA|NON_CODING|ENST00000516505||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	50:0:0:0:50,64:0,0:0,0:0,0	133:4:0:0:120,141:1,2:8,8:0,1
22	21808365	.	C	T	.	PASS	NT=ref;QSS=23;QSS_NT=23;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||615|HIC2|protein_coding|CODING|ENST00000407464||1),DOWNSTREAM(MODIFIER||||615|HIC2|protein_coding|CODING|ENST00000407598||1),DOWNSTREAM(MODIFIER||||615|HIC2|protein_coding|CODING|ENST00000443632||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	49:0:0:0:0,0:49,49:0,0:0,0	82:0:0:0:1,1:75,75:0,0:6,6
22	22625193	.	T	G	.	PASS	NT=ref;QSS=33;QSS_NT=33;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	69:1:0:0:0,0:1,1:0,0:67,79	188:4:0:0:0,0:1,1:16,19:167,198
22	22643593	.	G	C	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||LL22NC03-2H8.4|lincRNA|NON_CODING|ENST00000412149||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	94:9:0:0:0,0:0,0:85,101:0,0	162:20:0:0:0,0:6,9:133,177:3,3
22	22665707	.	G	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||LL22NC03-80A10.6|unprocessed_pseudogene|NON_CODING|ENST00000413293||1),INTRON(MODIFIER|||||LL22NC03-80A10.6|processed_transcript|NON_CODING|ENST00000426066|7|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	25:0:0:0:0,0:0,0:25,27:0,0	68:1:0:0:9,9:0,0:58,66:0,1
22	24151799	.	T	C	.	PASS	NT=ref;QSS=29;QSS_NT=29;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||339|SMARCB1|protein_coding|CODING|ENST00000407082|4|1),INTRON(MODIFIER||||376|SMARCB1|protein_coding|CODING|ENST00000407422|5|1),INTRON(MODIFIER||||385|SMARCB1|protein_coding|CODING|ENST00000263121|5|1),INTRON(MODIFIER||||394|SMARCB1|protein_coding|CODING|ENST00000344921|5|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	61:3:0:0:0,0:0,0:0,0:58,61	90:4:0:0:0,0:5,5:0,0:81,86
22	24302152	.	A	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||230|GSTT2B|protein_coding|CODING|ENST00000404172|2|1),INTRON(MODIFIER||||244|GSTT2B|protein_coding|CODING|ENST00000290765|2|1),UPSTREAM(MODIFIER|||||KB-1125A3.10|processed_pseudogene|NON_CODING|ENST00000423307||1),UPSTREAM(MODIFIER|||||KB-1125A3.10|processed_pseudogene|NON_CODING|ENST00000542932||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	49:2:0:0:46,55:0,0:1,1:0,0	120:4:0:0:102,133:1,1:13,14:0,0
22	24461549	.	T	A	.	PASS	NT=ref;QSS=23;QSS_NT=23;SGT=TT->AT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER||||2141|CABIN1|protein_coding|CODING|ENST00000405822|14|1),INTRON(MODIFIER||||2220|CABIN1|protein_coding|CODING|ENST00000263119|15|1),INTRON(MODIFIER||||2220|CABIN1|protein_coding|CODING|ENST00000398319|15|1),UPSTREAM(MODIFIER|||||CABIN1|retained_intron|CODING|ENST00000484593||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	50:0:0:0:0,1:0,0:2,3:48,62	103:6:2:0:12,17:0,0:3,11:82,113
22	24942159	.	G	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||126|C22orf13|protein_coding|CODING|ENST00000407973||1),DOWNSTREAM(MODIFIER|||||C22orf13|processed_transcript|CODING|ENST00000490810||1),DOWNSTREAM(MODIFIER|||||C22orf13|retained_intron|CODING|ENST00000468170||1),INTRON(MODIFIER||||136|C22orf13|protein_coding|CODING|ENST00000447813|4|1),INTRON(MODIFIER||||137|C22orf13|protein_coding|CODING|ENST00000402766|4|1),INTRON(MODIFIER||||239|C22orf13|protein_coding|CODING|ENST00000435822|4|1),INTRON(MODIFIER||||240|C22orf13|protein_coding|CODING|ENST00000407471|4|1),INTRON(MODIFIER||||295|C22orf13|protein_coding|CODING|ENST00000404664|4|1),INTRON(MODIFIER|||||C22orf13|nonsense_mediated_decay|CODING|ENST00000398245|4|1),INTRON(MODIFIER|||||C22orf13|processed_transcript|CODING|ENST00000490922|1|1),INTRON(MODIFIER|||||C22orf13|retained_intron|CODING|ENST00000480272|1|1),UPSTREAM(MODIFIER|||||C22orf13|processed_transcript|CODING|ENST00000493099||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:0:0:0:0,0:0,0:39,39:0,0	86:1:0:0:9,9:0,0:76,76:0,1
22	25219721	.	A	C	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1093|SGSM1|protein_coding|CODING|ENST00000400358|2|1),INTRON(MODIFIER||||1148|SGSM1|protein_coding|CODING|ENST00000400359|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	43:2:0:0:41,43:0,0:0,0:0,0	76:1:0:0:71,72:4,4:0,0:0,0
22	27087773	rs200602113	T	C	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||CTA-211A9.5|processed_transcript|NON_CODING|ENST00000421253|1|1),INTRON(MODIFIER|||||CTA-211A9.5|processed_transcript|NON_CODING|ENST00000435162|1|1),INTRON(MODIFIER|||||CTA-211A9.5|processed_transcript|NON_CODING|ENST00000437071|1|1),INTRON(MODIFIER|||||CTA-211A9.5|processed_transcript|NON_CODING|ENST00000440816|1|1),INTRON(MODIFIER|||||CTA-211A9.5|processed_transcript|NON_CODING|ENST00000444388|1|1),INTRON(MODIFIER|||||CTA-211A9.5|processed_transcript|NON_CODING|ENST00000449017|1|1),INTRON(MODIFIER|||||CTA-211A9.5|processed_transcript|NON_CODING|ENST00000450963|1|1);RSPOS=27087773;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	41:0:0:0:0,0:0,0:0,0:41,44	88:1:0:0:0,0:8,9:0,0:79,86
22	27131952	.	A	C	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||CTA-211A9.5|processed_transcript|NON_CODING|ENST00000444388||1),INTRON(MODIFIER|||||CTA-211A9.5|processed_transcript|NON_CODING|ENST00000435162|2|1),INTRON(MODIFIER|||||CTA-211A9.5|processed_transcript|NON_CODING|ENST00000437071|1|1),INTRON(MODIFIER|||||CTA-211A9.5|processed_transcript|NON_CODING|ENST00000440816|3|1),INTRON(MODIFIER|||||CTA-211A9.5|processed_transcript|NON_CODING|ENST00000446336|2|1),INTRON(MODIFIER|||||CTA-211A9.5|processed_transcript|NON_CODING|ENST00000450963|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	18:0:0:0:18,18:0,0:0,0:0,0	73:4:0:0:51,54:18,19:0,0:0,0
22	27401071	.	G	A	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:0:0:0:0,0:0,0:40,40:0,0	109:2:0:0:9,9:0,1:98,100:0,0
22	31309199	.	T	C	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||MTMR3|processed_transcript|CODING|ENST00000464734|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	45:0:0:0:0,0:0,0:1,1:44,44	90:0:0:0:0,0:6,6:0,0:84,84
22	31961089	rs141690843	G	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||148|SFI1|protein_coding|CODING|ENST00000450787||1),INTRON(MODIFIER||||1031|SFI1|protein_coding|CODING|ENST00000414585|4|1),INTRON(MODIFIER||||1089|SFI1|protein_coding|CODING|ENST00000443011|4|1),INTRON(MODIFIER||||1160|SFI1|protein_coding|CODING|ENST00000400289|6|1),INTRON(MODIFIER||||1160|SFI1|protein_coding|CODING|ENST00000443326|6|1),INTRON(MODIFIER||||1187|SFI1|protein_coding|CODING|ENST00000540643|7|1),INTRON(MODIFIER||||1211|SFI1|protein_coding|CODING|ENST00000432498|8|1),INTRON(MODIFIER||||1242|SFI1|protein_coding|CODING|ENST00000400288|8|1),INTRON(MODIFIER|||||SFI1|nonsense_mediated_decay|CODING|ENST00000524296|7|1),INTRON(MODIFIER|||||SFI1|retained_intron|CODING|ENST00000382162|8|1);RSPOS=31961089;GMAF=0.0078;dbSNPBuildID=134;SSR=0;SAO=0;VP=050000080005000014000100;GENEINFO=SFI1:9814;WGT=1;VC=SNV;INT;ASP;KGPhase1;KGPROD	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:0:0:0:0,0:0,0:33,33:0,0	90:1:0:0:5,7:0,0:84,86:0,0
22	32609567	.	G	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||659|SLC5A4|protein_coding|CODING|ENST00000266086||1),INTRON(MODIFIER|||||RP1-90G24.10|processed_transcript|NON_CODING|ENST00000434942|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:0:0:0:0,0:0,0:31,31:0,0	93:0:0:0:9,9:0,0:84,84:0,0
22	36314265	.	A	G	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||199|RBFOX2|protein_coding|CODING|ENST00000408983|2|1),INTRON(MODIFIER||||370|RBFOX2|protein_coding|CODING|ENST00000359369|1|1),INTRON(MODIFIER||||451|RBFOX2|protein_coding|CODING|ENST00000438146|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:2:0:0:37,39:0,0:0,0:0,0	125:0:0:0:115,115:0,0:9,9:1,1
22	36457857	.	C	G	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	44:1:0:0:0,0:43,44:0,0:0,0	102:1:0:0:0,0:92,93:9,9:0,0
22	37269106	rs35249734	A	G	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||165|NCF4|protein_coding|CODING|ENST00000447071|6|1),INTRON(MODIFIER||||339|NCF4|protein_coding|CODING|ENST00000248899|7|1),INTRON(MODIFIER||||348|NCF4|protein_coding|CODING|ENST00000397147|7|1),UPSTREAM(MODIFIER|||||CTA-833B7.2|antisense|NON_CODING|ENST00000330602||1),UPSTREAM(MODIFIER|||||CTA-833B7.2|antisense|NON_CODING|ENST00000431290||1);RSPOS=37269106;GMAF=0.0742;dbSNPBuildID=126;SSR=0;SAO=0;VP=050000080001040116000100;GENEINFO=NCF4:4689;WGT=1;VC=SNV;INT;VLD;GNO;KGPhase1;KGPROD;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	41:5:1:0:35,40:0,0:1,3:0,0	92:11:0:0:66,68:0,0:15,29:0,0
22	39042894	.	T	G	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||FAM227A|retained_intron|CODING|ENST00000490082||1),INTRON(MODIFIER||||477|FAM227A|protein_coding|CODING|ENST00000466655|2|1),INTRON(MODIFIER||||570|FAM227A|protein_coding|CODING|ENST00000535113|2|1),INTRON(MODIFIER||||646|FAM227A|protein_coding|CODING|ENST00000355830|2|1),INTRON(MODIFIER||||646|FAM227A|protein_coding|CODING|ENST00000406767|2|1),INTRON(MODIFIER|||||FAM227A|processed_transcript|CODING|ENST00000424706|2|1),INTRON(MODIFIER|||||FAM227A|processed_transcript|CODING|ENST00000540952|2|1),INTRON(MODIFIER|||||FAM227A|processed_transcript|CODING|ENST00000541689|2|1),INTRON(MODIFIER|||||FAM227A|processed_transcript|CODING|ENST00000544346|2|1),INTRON(MODIFIER|||||FAM227A|retained_intron|CODING|ENST00000484582|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:1:0:0:0,0:0,0:0,0:35,36	100:1:0:0:0,0:0,0:6,6:93,96
22	39042904	.	C	T	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||FAM227A|retained_intron|CODING|ENST00000490082||1),INTRON(MODIFIER||||477|FAM227A|protein_coding|CODING|ENST00000466655|2|1),INTRON(MODIFIER||||570|FAM227A|protein_coding|CODING|ENST00000535113|2|1),INTRON(MODIFIER||||646|FAM227A|protein_coding|CODING|ENST00000355830|2|1),INTRON(MODIFIER||||646|FAM227A|protein_coding|CODING|ENST00000406767|2|1),INTRON(MODIFIER|||||FAM227A|processed_transcript|CODING|ENST00000424706|2|1),INTRON(MODIFIER|||||FAM227A|processed_transcript|CODING|ENST00000540952|2|1),INTRON(MODIFIER|||||FAM227A|processed_transcript|CODING|ENST00000541689|2|1),INTRON(MODIFIER|||||FAM227A|processed_transcript|CODING|ENST00000544346|2|1),INTRON(MODIFIER|||||FAM227A|retained_intron|CODING|ENST00000484582|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:0:0:0:0,0:39,39:0,0:0,0	101:1:0:0:0,0:95,98:0,0:5,5
22	39099951	.	C	T	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER||||103|JOSD1|protein_coding|CODING|ENST00000412832||1),UPSTREAM(MODIFIER||||122|JOSD1|protein_coding|CODING|ENST00000427389||1),UPSTREAM(MODIFIER||||151|GTPBP1|protein_coding|CODING|ENST00000484657||1),UPSTREAM(MODIFIER||||202|JOSD1|protein_coding|CODING|ENST00000216039||1),UPSTREAM(MODIFIER||||38|GTPBP1|protein_coding|CODING|ENST00000470836||1),UPSTREAM(MODIFIER||||60|JOSD1|protein_coding|CODING|ENST00000456626||1),UPSTREAM(MODIFIER||||61|JOSD1|protein_coding|CODING|ENST00000417712||1),UPSTREAM(MODIFIER||||669|GTPBP1|protein_coding|CODING|ENST00000216044||1),UPSTREAM(MODIFIER||||85|GTPBP1|protein_coding|CODING|ENST00000488787||1),UPSTREAM(MODIFIER|||||GTPBP1|nonsense_mediated_decay|CODING|ENST00000418601||1),UPSTREAM(MODIFIER|||||GTPBP1|retained_intron|CODING|ENST00000461428||1),UPSTREAM(MODIFIER|||||JOSD1|processed_transcript|CODING|ENST00000462610||1),UPSTREAM(MODIFIER|||||JOSD1|processed_transcript|CODING|ENST00000490169||1),UPSTREAM(MODIFIER|||||JOSD1|processed_transcript|CODING|ENST00000493939||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	45:0:0:0:1,1:44,47:0,0:0,0	108:0:0:0:0,0:99,100:0,0:9,9
22	39960248	.	A	G	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	42:3:0:0:39,40:0,1:0,0:0,1	125:7:2:0:109,112:0,0:9,11:0,2
22	40378287	.	G	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:0:0:0:0,0:0,0:32,32:0,0	97:2:0:0:5,6:0,0:90,93:0,0
22	41331787	.	C	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||507|XPNPEP3|protein_coding|CODING|ENST00000357137||1),INTRON(MODIFIER||||28|XPNPEP3|protein_coding|CODING|ENST00000465561|1|1),INTRON(MODIFIER||||484|XPNPEP3|protein_coding|CODING|ENST00000544094|10|1),INTRON(MODIFIER|||||XPNPEP3|nonsense_mediated_decay|CODING|ENST00000466988|1|1),INTRON(MODIFIER|||||XPNPEP3|nonsense_mediated_decay|CODING|ENST00000472203|1|1),INTRON(MODIFIER|||||XPNPEP3|nonsense_mediated_decay|CODING|ENST00000476644|1|1),INTRON(MODIFIER|||||XPNPEP3|nonsense_mediated_decay|CODING|ENST00000479286|2|1),INTRON(MODIFIER|||||XPNPEP3|nonsense_mediated_decay|CODING|ENST00000498684|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:0:0:0:0,0:40,40:0,0:0,0	95:4:0:0:0,0:85,92:1,1:5,6
22	41448895	.	C	G	.	PASS	NT=ref;QSS=23;QSS_NT=23;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	42:0:0:0:0,0:42,42:0,0:0,0	81:0:0:0:0,0:70,70:11,11:0,0
22	41508182	.	A	G	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=AA->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER||||2414|EP300|protein_coding|CODING|ENST00000263253|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	59:3:0:0:56,60:0,0:0,0:0,0	93:4:0:0:81,88:3,3:5,5:0,0
22	41775495	.	G	C	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||273|TEF|protein_coding|CODING|ENST00000406644|1|1),INTRON(MODIFIER||||273|TEF|protein_coding|CODING|ENST00000433913|1|1),UPSTREAM(MODIFIER||||303|TEF|protein_coding|CODING|ENST00000266304||1),UPSTREAM(MODIFIER|||||U6|snRNA|NON_CODING|ENST00000362995||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:1:0:0:0,0:0,0:39,40:0,0	76:0:0:0:0,0:8,9:68,69:0,0
22	42416916	.	T	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||235|WBP2NL|protein_coding|CODING|ENST00000543212|2|1),INTRON(MODIFIER||||309|WBP2NL|protein_coding|CODING|ENST00000328823|4|1),INTRON(MODIFIER|||||WBP2NL|nonsense_mediated_decay|CODING|ENST00000329620|4|1),INTRON(MODIFIER|||||WBP2NL|nonsense_mediated_decay|CODING|ENST00000412113|4|1),INTRON(MODIFIER|||||WBP2NL|nonsense_mediated_decay|CODING|ENST00000436265|4|1),INTRON(MODIFIER|||||WBP2NL|nonsense_mediated_decay|CODING|ENST00000445185|4|1),INTRON(MODIFIER|||||WBP2NL|processed_transcript|CODING|ENST00000475341|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	27:1:0:0:0,0:0,0:0,0:26,28	68:1:0:0:7,7:0,0:0,0:60,64
22	42436019	.	G	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||WBP2NL|nonsense_mediated_decay|CODING|ENST00000436265|8|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:0:0:0:0,0:0,0:29,29:1,1	81:3:0:0:7,7:0,0:71,74:0,0
22	42436040	.	A	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||WBP2NL|nonsense_mediated_decay|CODING|ENST00000436265|8|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:1:0:0:29,30:0,0:0,0:0,0	76:1:0:0:67,68:0,0:0,0:8,8
22	42634892	.	G	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||152|TCF20|protein_coding|CODING|ENST00000515426|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	49:2:0:0:1,1:0,0:46,49:0,0	113:2:0:0:5,6:0,0:106,108:0,0
22	42969919	rs201448268	C	T	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||RRP7B|processed_transcript|NON_CODING|ENST00000421116||1),DOWNSTREAM(MODIFIER|||||RRP7B|transcribed_unprocessed_pseudogene|NON_CODING|ENST00000566851||1),DOWNSTREAM(MODIFIER|||||SERHL2|retained_intron|CODING|ENST00000534080||1),EXON(MODIFIER|||||RRP7B|processed_transcript|NON_CODING|ENST00000458605|7|1),INTRON(MODIFIER||||134|SERHL2|protein_coding|CODING|ENST00000407614|6|1),INTRON(MODIFIER||||203|SERHL2|protein_coding|CODING|ENST00000340239|9|1),INTRON(MODIFIER||||250|SERHL2|protein_coding|CODING|ENST00000335879|9|1),INTRON(MODIFIER||||314|SERHL2|protein_coding|CODING|ENST00000327678|11|1),INTRON(MODIFIER|||||RRP7B|processed_transcript|NON_CODING|ENST00000357802|7|1),INTRON(MODIFIER|||||RRP7B|processed_transcript|NON_CODING|ENST00000437211|7|1),INTRON(MODIFIER|||||SERHL2|nonsense_mediated_decay|CODING|ENST00000416156|10|1),INTRON(MODIFIER|||||SERHL2|nonsense_mediated_decay|CODING|ENST00000477564|10|1),INTRON(MODIFIER|||||SERHL2|retained_intron|CODING|ENST00000527167|9|1),UPSTREAM(MODIFIER|||||U6|snRNA|NON_CODING|ENST00000516104||1);RSPOS=42969919;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000080005070002000100;WGT=1;VC=SNV;INT;ASP;VLD;G5A;G5;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	49:2:0:0:0,0:47,49:0,0:0,0	87:6:0:0:0,0:75,80:1,1:5,7
22	43377555	.	C	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||151|PACSIN2|protein_coding|CODING|ENST00000422336|1|1),INTRON(MODIFIER||||154|PACSIN2|protein_coding|CODING|ENST00000453643|2|1),INTRON(MODIFIER||||445|PACSIN2|protein_coding|CODING|ENST00000337959|1|1),INTRON(MODIFIER||||486|PACSIN2|protein_coding|CODING|ENST00000263246|1|1),INTRON(MODIFIER|||||PACSIN2|nonsense_mediated_decay|CODING|ENST00000445706|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	17:2:0:0:0,0:15,25:0,0:0,0	29:1:0:0:0,0:22,41:0,0:6,8
22	44217340	.	C	T	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||171|SULT4A1|protein_coding|CODING|ENST00000540422||1),DOWNSTREAM(MODIFIER||||284|SULT4A1|protein_coding|CODING|ENST00000330884||1),DOWNSTREAM(MODIFIER|||||RP3-388M5.9|antisense|NON_CODING|ENST00000563715||1),DOWNSTREAM(MODIFIER|||||SULT4A1|nonsense_mediated_decay|CODING|ENST00000422525||1),DOWNSTREAM(MODIFIER|||||SULT4A1|nonsense_mediated_decay|CODING|ENST00000432404||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	46:2:0:0:0,0:43,45:1,1:0,0	90:0:0:0:0,0:82,82:0,0:8,8
22	44230172	.	T	A	.	PASS	NT=ref;QSS=25;QSS_NT=25;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||171|SULT4A1|protein_coding|CODING|ENST00000540422|1|1),INTRON(MODIFIER||||260|SULT4A1|protein_coding|CODING|ENST00000249130|4|1),INTRON(MODIFIER||||284|SULT4A1|protein_coding|CODING|ENST00000330884|4|1),INTRON(MODIFIER|||||SULT4A1|nonsense_mediated_decay|CODING|ENST00000422525|4|1),INTRON(MODIFIER|||||SULT4A1|nonsense_mediated_decay|CODING|ENST00000432404|3|1),INTRON(MODIFIER|||||SULT4A1|retained_intron|CODING|ENST00000475131|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	50:0:0:0:0,0:0,0:0,0:50,61	61:2:0:0:5,6:2,2:0,1:52,71
22	44380609	.	C	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->AC;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER||||259|SAMM50|protein_coding|CODING|ENST00000396202|11|1),INTRON(MODIFIER||||469|SAMM50|protein_coding|CODING|ENST00000350028|12|1),INTRON(MODIFIER|||||SAMM50|retained_intron|CODING|ENST00000474323|5|1),UPSTREAM(MODIFIER|||||SAMM50|retained_intron|CODING|ENST00000494795||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	42:1:0:0:0,0:41,42:0,0:0,0	88:2:0:0:4,4:82,86:0,0:0,0
22	44698827	rs7510586	A	G	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||199|KIAA1644|protein_coding|CODING|ENST00000381176|1|1);RSPOS=44698827;GMAF=0.245;dbSNPBuildID=116;SSR=0;SAO=0;VP=05010008000505011f000100;GENEINFO=KIAA1644:85352;WGT=1;VC=SNV;SLO;INT;ASP;VLD;G5;GNO;KGPhase1;KGPilot123;KGPROD;OTHERKG;PH3	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:0:0:0:40,40:0,0:0,0:0,0	101:1:1:0:90,92:1,1:9,9:0,0
22	44702147	.	C	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||199|KIAA1644|protein_coding|CODING|ENST00000381176|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	42:0:0:0:0,0:42,44:0,0:0,0	86:3:0:0:0,0:79,83:0,0:4,6
22	44702540	.	G	A	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=GG->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER||||199|KIAA1644|protein_coding|CODING|ENST00000381176|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:4:0:0:0,1:0,1:31,38:0,0	74:11:0:0:11,12:0,0:52,72:0,0
22	45197370	rs13054279	T	C	.	PASS	NT=ref;QSS=23;QSS_NT=23;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||114|ARHGAP8|protein_coding|CODING|ENST00000412433|4|1),INTRON(MODIFIER||||129|ARHGAP8|protein_coding|CODING|ENST00000396119|3|1),INTRON(MODIFIER||||305|ARHGAP8|protein_coding|CODING|ENST00000336963|2|1),INTRON(MODIFIER||||433|ARHGAP8|protein_coding|CODING|ENST00000356099|2|1),INTRON(MODIFIER||||464|ARHGAP8|protein_coding|CODING|ENST00000389774|2|1),INTRON(MODIFIER||||555|ARHGAP8|protein_coding|CODING|ENST00000389773|5|1),INTRON(MODIFIER||||564|PRR5-ARHGAP8|protein_coding|CODING|ENST00000361473|5|1),INTRON(MODIFIER||||643|ARHGAP8|protein_coding|CODING|ENST00000517296|8|1),INTRON(MODIFIER||||643|PRR5-ARHGAP8|protein_coding|CODING|ENST00000352766|8|1),INTRON(MODIFIER|||||ARHGAP8|nonsense_mediated_decay|CODING|ENST00000389772|1|1),INTRON(MODIFIER|||||ARHGAP8|nonsense_mediated_decay|CODING|ENST00000447333|2|1),INTRON(MODIFIER|||||ARHGAP8|retained_intron|CODING|ENST00000460809|2|1),INTRON(MODIFIER|||||ARHGAP8|retained_intron|CODING|ENST00000495219|1|1),INTRON(MODIFIER|||||PRR5-ARHGAP8|retained_intron|CODING|ENST00000495250|3|1),UPSTREAM(MODIFIER|||||ARHGAP8|retained_intron|CODING|ENST00000498310||1);RSPOS=45197370;GMAF=0.1896;dbSNPBuildID=121;SSR=0;SAO=0;VP=050000080001040016000100;GENEINFO=ARHGAP8:23779|PRR5-ARHGAP8:553158;WGT=1;VC=SNV;INT;VLD;KGPhase1;KGPROD;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	50:3:0:0:0,0:0,0:1,2:46,51	102:4:0:0:0,0:7,8:0,1:91,97
22	45197383	.	A	G	.	PASS	NT=ref;QSS=27;QSS_NT=27;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||114|ARHGAP8|protein_coding|CODING|ENST00000412433|4|1),INTRON(MODIFIER||||129|ARHGAP8|protein_coding|CODING|ENST00000396119|3|1),INTRON(MODIFIER||||305|ARHGAP8|protein_coding|CODING|ENST00000336963|2|1),INTRON(MODIFIER||||433|ARHGAP8|protein_coding|CODING|ENST00000356099|2|1),INTRON(MODIFIER||||464|ARHGAP8|protein_coding|CODING|ENST00000389774|2|1),INTRON(MODIFIER||||555|ARHGAP8|protein_coding|CODING|ENST00000389773|5|1),INTRON(MODIFIER||||564|PRR5-ARHGAP8|protein_coding|CODING|ENST00000361473|5|1),INTRON(MODIFIER||||643|ARHGAP8|protein_coding|CODING|ENST00000517296|8|1),INTRON(MODIFIER||||643|PRR5-ARHGAP8|protein_coding|CODING|ENST00000352766|8|1),INTRON(MODIFIER|||||ARHGAP8|nonsense_mediated_decay|CODING|ENST00000389772|1|1),INTRON(MODIFIER|||||ARHGAP8|nonsense_mediated_decay|CODING|ENST00000447333|2|1),INTRON(MODIFIER|||||ARHGAP8|retained_intron|CODING|ENST00000460809|2|1),INTRON(MODIFIER|||||ARHGAP8|retained_intron|CODING|ENST00000495219|1|1),INTRON(MODIFIER|||||PRR5-ARHGAP8|retained_intron|CODING|ENST00000495250|3|1),UPSTREAM(MODIFIER|||||ARHGAP8|retained_intron|CODING|ENST00000498310||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	58:2:0:0:55,59:1,2:0,0:0,0	117:3:0:0:100,102:2,2:11,13:1,1
22	46392291	.	G	C	.	PASS	NT=ref;QSS=36;QSS_NT=36;SGT=GG->CG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	56:0:0:0:0,0:0,0:56,56:0,0	82:1:0:0:0,0:14,14:67,68:0,0
22	46592898	.	A	G	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||132|PPARA|protein_coding|CODING|ENST00000420804|2|1),INTRON(MODIFIER||||468|PPARA|protein_coding|CODING|ENST00000262735|2|1),INTRON(MODIFIER||||468|PPARA|protein_coding|CODING|ENST00000396000|2|1),INTRON(MODIFIER||||468|PPARA|protein_coding|CODING|ENST00000402126|1|1),INTRON(MODIFIER||||468|PPARA|protein_coding|CODING|ENST00000407236|2|1),INTRON(MODIFIER||||68|PPARA|protein_coding|CODING|ENST00000415785|3|1),INTRON(MODIFIER||||8|PPARA|protein_coding|CODING|ENST00000440343|3|1),INTRON(MODIFIER|||||PPARA|processed_transcript|CODING|ENST00000481567|4|1),INTRON(MODIFIER|||||PPARA|processed_transcript|CODING|ENST00000484619|1|1),INTRON(MODIFIER|||||PPARA|retained_intron|CODING|ENST00000493286|2|1),UPSTREAM(MODIFIER||||174|PPARA|protein_coding|CODING|ENST00000434345||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	45:0:0:0:44,44:0,0:1,1:0,0	101:2:0:0:92,94:0,0:7,7:0,0
22	47011837	.	G	A	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||32|GRAMD4|protein_coding|CODING|ENST00000431155|1|1),INTRON(MODIFIER||||85|GRAMD4|protein_coding|CODING|ENST00000447351|1|1),UPSTREAM(MODIFIER||||578|GRAMD4|protein_coding|CODING|ENST00000406902||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	41:5:0:0:0,0:0,0:36,50:0,0	78:9:1:0:5,7:1,2:63,83:0,2
22	47030977	rs113413839	T	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||578|GRAMD4|protein_coding|CODING|ENST00000361034|1|1),INTRON(MODIFIER||||578|GRAMD4|protein_coding|CODING|ENST00000406902|2|1),INTRON(MODIFIER||||85|GRAMD4|protein_coding|CODING|ENST00000447351|2|1),INTRON(MODIFIER|||||GRAMD4|processed_transcript|CODING|ENST00000490378|1|1);RSPOS=47030977;GMAF=0.1543;dbSNPBuildID=132;SSR=0;SAO=0;VP=050000080001040116000100;GENEINFO=GRAMD4:23151;WGT=1;VC=SNV;INT;VLD;GNO;KGPhase1;KGPROD;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	46:2:0:0:0,0:1,1:0,0:43,48	107:1:0:0:0,0:9,9:0,0:97,100
22	49019052	.	C	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||125|FAM19A5|protein_coding|CODING|ENST00000358295|1|1),INTRON(MODIFIER||||132|FAM19A5|protein_coding|CODING|ENST00000402357|1|1),INTRON(MODIFIER||||180|FAM19A5|protein_coding|CODING|ENST00000336769|1|1),INTRON(MODIFIER|||||FAM19A5|processed_transcript|CODING|ENST00000473898|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:1:0:0:0,0:34,41:0,0:0,0	79:1:1:0:0,0:71,81:0,0:7,7
22	49639014	rs201061502	G	A	.	PASS	NT=ref;QSS=25;QSS_NT=25;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=49639014;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	57:4:0:0:1,2:0,0:52,78:0,0	116:17:0:0:16,23:0,0:83,127:0,0
22	49779867	rs5019151	C	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=49779867;dbSNPBuildID=113;SSR=0;SAO=0;VP=050000000001000002000100;WGT=1;VC=SNV;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	47:1:0:0:0,0:45,47:0,1:1,1	107:4:0:0:1,1:95,96:0,1:7,14
22	50723609	.	T	C	.	PASS	NT=ref;QSS=26;QSS_NT=26;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||160|PLXNB2|protein_coding|CODING|ENST00000425954||1),DOWNSTREAM(MODIFIER||||476|PLXNB2|protein_coding|CODING|ENST00000432455||1),INTRON(MODIFIER||||1838|PLXNB2|protein_coding|CODING|ENST00000359337|11|1),INTRON(MODIFIER||||1838|PLXNB2|protein_coding|CODING|ENST00000449103|11|1),INTRON(MODIFIER||||233|PLXNB2|protein_coding|CODING|ENST00000411680|2|1),INTRON(MODIFIER|||||PLXNB2|processed_transcript|CODING|ENST00000496720|3|1),UPSTREAM(MODIFIER|||||PLXNB2|retained_intron|CODING|ENST00000463165||1),UPSTREAM(MODIFIER|||||PLXNB2|retained_intron|CODING|ENST00000479701||1),UPSTREAM(MODIFIER|||||PLXNB2|retained_intron|CODING|ENST00000492578||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	52:1:0:0:0,0:0,0:0,0:51,54	77:1:0:0:0,0:8,8:0,0:68,71
22	50768582	.	T	C	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER||||585|FAM116B|protein_coding|CODING|ENST00000413817||1),UPSTREAM(MODIFIER|||||FAM116B|retained_intron|CODING|ENST00000495607||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:0:0:0:0,0:0,0:1,1:39,40	87:0:0:0:0,0:6,6:2,2:79,81
22	50768593	.	A	G	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER||||585|FAM116B|protein_coding|CODING|ENST00000413817||1),UPSTREAM(MODIFIER|||||FAM116B|retained_intron|CODING|ENST00000495607||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	42:0:0:0:42,42:0,0:0,0:0,0	85:2:0:0:76,79:0,0:7,8:0,0
X	155728	.	C	G	.	PASS	NT=ref;QSS=23;QSS_NT=23;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:3:0:0:0,0:26,39:0,0:0,1	59:3:0:0:0,1:45,69:11,13:0,0
X	328876	.	T	C	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=TT->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER||||168|PPP2R3B|protein_coding|CODING|ENST00000381625|1|1),INTRON(MODIFIER||||575|PPP2R3B|protein_coding|CODING|ENST00000390665|1|1),INTRON(MODIFIER|||||PPP2R3B|retained_intron|CODING|ENST00000445792|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	65:8:0:0:0,3:0,2:0,1:57,61	94:6:0:0:0,1:6,9:0,0:82,92
X	360188	.	G	T	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:0:0:0:0,0:0,0:39,39:0,0	79:1:0:0:0,1:0,0:71,79:7,8
X	631130	.	C	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:0:0:0:0,0:38,39:0,0:0,0	107:2:0:0:0,0:100,102:0,0:5,6
X	654634	.	T	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	27:0:0:0:0,0:0,0:0,0:27,27	83:1:0:0:0,0:12,12:0,0:70,73
X	654663	.	G	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	28:1:0:0:0,0:0,0:27,29:0,0	81:1:0:0:0,0:0,0:72,75:8,8
X	685898	.	C	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:4:0:0:0,0:26,70:0,0:0,3	61:8:0:0:2,2:45,120:0,1:6,11
X	686038	.	C	A	.	PASS	NT=ref;QSS=23;QSS_NT=23;SGT=CC->AC;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	56:6:0:0:0,3:50,114:0,0:0,0	94:2:0:0:7,12:85,182:0,0:0,0
X	741037	.	T	C	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=TT->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	53:1:0:0:0,0:0,2:0,0:52,61	138:2:0:0:1,2:11,12:0,0:124,136
X	799964	.	C	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:0:0:0:0,1:37,46:0,0:0,1	93:1:0:0:0,0:83,121:0,1:9,13
X	1262092	.	C	T	.	PASS	NT=ref;QSS=23;QSS_NT=23;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	53:1:0:0:0,0:52,54:0,0:0,0	128:6:0:0:1,1:116,123:0,1:5,6
X	1322499	.	C	G	.	PASS	NT=ref;QSS=24;QSS_NT=24;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||233|CRLF2|protein_coding|CODING|ENST00000381566|3|1),INTRON(MODIFIER||||254|CRLF2|protein_coding|CODING|ENST00000400841|3|1),INTRON(MODIFIER||||256|CRLF2|protein_coding|CODING|ENST00000381567|3|1),INTRON(MODIFIER|||||CRLF2|processed_transcript|CODING|ENST00000467626|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	47:0:0:0:0,0:47,49:0,0:0,0	89:0:0:0:0,0:81,83:8,8:0,0
X	1555900	.	T	C	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||ASMTL|processed_transcript|CODING|ENST00000474865||1),INTRON(MODIFIER||||545|ASMTL|protein_coding|CODING|ENST00000416733|3|1),INTRON(MODIFIER||||563|ASMTL|protein_coding|CODING|ENST00000534940|3|1),INTRON(MODIFIER||||605|ASMTL|protein_coding|CODING|ENST00000381333|2|1),INTRON(MODIFIER||||621|ASMTL|protein_coding|CODING|ENST00000381317|3|1),UPSTREAM(MODIFIER|||||ASMTL|processed_transcript|CODING|ENST00000462195||1),UPSTREAM(MODIFIER|||||ASMTL|processed_transcript|CODING|ENST00000463763||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	47:1:0:0:0,0:0,0:0,0:46,47	100:1:0:0:1,1:5,6:0,0:93,93
X	1594763	.	T	C	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||359|P2RY8|protein_coding|CODING|ENST00000381297|1|1),INTRON(MODIFIER|||||P2RY8|processed_transcript|CODING|ENST00000460672|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:0:0:0:0,0:0,0:0,0:38,38	105:2:0:0:0,0:9,10:0,0:94,95
X	1608976	.	A	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||359|P2RY8|protein_coding|CODING|ENST00000381297|1|1),INTRON(MODIFIER|||||P2RY8|processed_transcript|CODING|ENST00000460672|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	16:1:0:0:15,32:0,0:0,1:0,0	55:2:0:0:42,78:0,0:11,17:0,0
X	1632481	.	T	C	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=TT->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER||||359|P2RY8|protein_coding|CODING|ENST00000381297|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	47:0:0:0:0,0:0,0:0,0:47,47	105:2:0:0:0,0:8,8:0,0:95,98
X	1656910	.	T	C	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER||||359|P2RY8|protein_coding|CODING|ENST00000381297||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	44:1:0:0:0,0:0,0:1,1:42,43	84:0:0:0:0,0:7,7:1,1:76,76
X	1722911	.	A	G	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||446|AKAP17A|protein_coding|CODING|ENST00000381261||1),DOWNSTREAM(MODIFIER||||695|AKAP17A|protein_coding|CODING|ENST00000313871||1),DOWNSTREAM(MODIFIER|||||AKAP17A|nonsense_mediated_decay|CODING|ENST00000474361||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	44:1:0:0:43,44:0,0:0,0:0,0	112:1:0:0:105,109:0,0:6,8:0,0
X	1780618	.	C	T	.	PASS	NT=ref;QSS=28;QSS_NT=28;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	56:0:0:0:0,0:56,58:0,0:0,0	127:1:0:0:0,0:118,121:0,0:8,8
X	1880282	.	A	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:0:0:0:30,30:0,0:0,0:0,0	80:2:0:0:73,73:0,2:5,5:0,0
X	1992640	.	C	T	.	PASS	NT=ref;QSS=23;QSS_NT=23;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	23:1:0:0:0,0:22,23:0,0:0,0	81:6:0:0:0,0:59,67:0,0:16,16
X	2045044	.	A	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:0:0:0:31,31:0,0:0,0:0,0	105:4:0:0:96,100:0,0:0,0:5,5
X	2747288	.	A	C	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=AA->AC;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER||||430|GYG2|protein_coding|CODING|ENST00000542787|1|1),INTRON(MODIFIER||||465|GYG2|protein_coding|CODING|ENST00000338623|1|1),INTRON(MODIFIER||||470|GYG2|protein_coding|CODING|ENST00000398806|1|1),INTRON(MODIFIER||||501|GYG2|protein_coding|CODING|ENST00000381163|1|1),INTRON(MODIFIER|||||GYG2|processed_transcript|CODING|ENST00000381161|1|1),INTRON(MODIFIER|||||GYG2|processed_transcript|CODING|ENST00000522988|1|1),UPSTREAM(MODIFIER||||136|GYG2|protein_coding|CODING|ENST00000520904||1),UPSTREAM(MODIFIER|||||GYG2|nonsense_mediated_decay|CODING|ENST00000469234||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	45:5:0:0:40,47:0,1:0,0:0,0	78:2:0:0:72,81:4,4:0,0:0,0
X	3291465	.	A	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	28:0:0:0:28,28:0,0:0,0:0,0	116:2:0:0:103,105:11,11:0,0:0,0
X	4686329	rs187728820	A	T	.	PASS	NT=ref;QSS=23;QSS_NT=23;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=4686329;GMAF=0.00361664;dbSNPBuildID=135;SSR=0;SAO=0;VP=050000000005000014000100;WGT=1;VC=SNV;ASP;KGPhase1;KGPROD	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	45:0:0:0:45,45:0,0:0,0:0,0	115:0:0:0:107,107:0,0:0,0:8,8
X	5588236	rs28610518	T	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-733O18.1|lincRNA|NON_CODING|ENST00000422914|1|1),INTRON(MODIFIER|||||RP11-733O18.1|lincRNA|NON_CODING|ENST00000444185|2|1),INTRON(MODIFIER|||||RP11-733O18.1|lincRNA|NON_CODING|ENST00000456559|1|1);RSPOS=5588236;GMAF=0.0904159;dbSNPBuildID=125;SSR=0;SAO=0;VP=050000000001040016000100;WGT=1;VC=SNV;VLD;KGPhase1;KGPROD;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	15:0:0:0:0,0:0,0:0,0:15,15	101:3:0:0:20,20:0,0:0,0:78,84
X	6513903	.	T	C	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:0:0:0:0,0:0,0:0,0:40,40	128:1:0:0:0,0:10,10:0,0:117,118
X	7145262	.	C	A	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||583|STS|protein_coding|CODING|ENST00000217961|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:0:0:0:0,0:35,35:0,0:0,0	91:0:0:0:8,8:83,83:0,0:0,0
X	9662959	.	A	T	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||526|TBL1X|protein_coding|CODING|ENST00000380961|11|1),INTRON(MODIFIER||||526|TBL1X|protein_coding|CODING|ENST00000424279|10|1),INTRON(MODIFIER||||526|TBL1X|protein_coding|CODING|ENST00000536365|11|1),INTRON(MODIFIER||||577|TBL1X|protein_coding|CODING|ENST00000217964|11|1),INTRON(MODIFIER||||577|TBL1X|protein_coding|CODING|ENST00000407597|11|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	42:0:0:0:42,42:0,0:0,0:0,0	110:4:0:0:100,103:0,0:0,0:6,7
X	9795263	rs200122650	C	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1616|SHROOM2|protein_coding|CODING|ENST00000380913|1|1);RSPOS=9795263;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000080001000402000100;WGT=1;VC=SNV;INT;HD;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:0:0:0:0,0:32,33:0,0:0,0	79:2:0:0:0,0:68,70:0,0:9,9
X	10187943	.	C	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||666|CLCN4|protein_coding|CODING|ENST00000421085|8|1),INTRON(MODIFIER||||729|CLCN4|protein_coding|CODING|ENST00000380829|11|1),INTRON(MODIFIER||||760|CLCN4|protein_coding|CODING|ENST00000380833|11|1),UPSTREAM(MODIFIER|||||AC003666.1|miRNA|NON_CODING|ENST00000410201||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:0:0:0:0,0:35,35:0,0:0,0	123:0:0:0:0,0:118,118:0,0:5,5
X	12186195	.	G	A	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1322|FRMPD4|protein_coding|CODING|ENST00000380682|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	43:0:0:0:0,0:0,0:43,43:0,0	83:1:0:0:8,8:0,0:74,75:0,0
X	12937755	.	C	T	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|aCg/aTg|T199M|1041|TLR8|protein_coding|CODING|ENST00000218032|2|1),NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|aCg/aTg|T217M|1059|TLR8|protein_coding|CODING|ENST00000311912|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:0:0:0:0,0:36,36:0,0:0,0	80:1:0:0:0,0:71,73:0,0:8,8
X	12961723	.	C	T	.	PASS	NT=ref;QSS=23;QSS_NT=23;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	47:0:0:0:0,0:47,50:0,0:0,0	112:2:0:0:0,0:105,109:0,0:5,8
X	13749066	.	T	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->AT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER||||113|TRAPPC2|protein_coding|CODING|ENST00000519885|1|1),INTRON(MODIFIER||||140|TRAPPC2|protein_coding|CODING|ENST00000358231|1|1),INTRON(MODIFIER||||140|TRAPPC2|protein_coding|CODING|ENST00000359680|1|1),INTRON(MODIFIER||||140|TRAPPC2|protein_coding|CODING|ENST00000380579|2|1),INTRON(MODIFIER||||147|TRAPPC2|protein_coding|CODING|ENST00000453655|2|1),INTRON(MODIFIER||||174|TRAPPC2|protein_coding|CODING|ENST00000458511|2|1),INTRON(MODIFIER||||73|TRAPPC2|protein_coding|CODING|ENST00000518847|2|1),INTRON(MODIFIER|||||TRAPPC2|nonsense_mediated_decay|CODING|ENST00000419678|1|1),INTRON(MODIFIER|||||TRAPPC2|retained_intron|CODING|ENST00000519382|2|1),UPSTREAM(MODIFIER||||1012|OFD1|protein_coding|CODING|ENST00000340096||1),UPSTREAM(MODIFIER||||367|OFD1|protein_coding|CODING|ENST00000398395||1),UPSTREAM(MODIFIER||||872|OFD1|protein_coding|CODING|ENST00000380567||1),UPSTREAM(MODIFIER||||972|OFD1|protein_coding|CODING|ENST00000380550||1),UPSTREAM(MODIFIER|||||OFD1|processed_transcript|CODING|ENST00000485052||1),UPSTREAM(MODIFIER|||||OFD1|processed_transcript|CODING|ENST00000490265||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	46:1:0:0:0,2:0,0:1,1:44,45	116:3:0:0:5,6:0,0:0,1:108,110
X	14770936	.	T	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	27:0:0:0:0,0:0,0:0,0:27,27	97:0:0:0:0,0:0,0:5,5:92,92
X	15310040	.	C	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||302|ASB11|protein_coding|CODING|ENST00000344384|4|1),INTRON(MODIFIER||||302|ASB11|protein_coding|CODING|ENST00000537676|4|1),INTRON(MODIFIER||||306|ASB11|protein_coding|CODING|ENST00000380470|4|1),INTRON(MODIFIER||||323|ASB11|protein_coding|CODING|ENST00000480796|4|1),INTRON(MODIFIER|||||ASB11|nonsense_mediated_decay|CODING|ENST00000485437|4|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:2:0:0:0,0:32,35:0,0:0,0	92:2:0:0:0,0:83,85:1,1:6,6
X	15708445	.	A	G	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||75|CA5B|protein_coding|CODING|ENST00000498004|1|1),INTRON(MODIFIER|||||CA5BP1|processed_transcript|NON_CODING|ENST00000380331|3|1),INTRON(MODIFIER|||||CA5BP1|processed_transcript|NON_CODING|ENST00000380333|2|1),INTRON(MODIFIER|||||CA5BP1|processed_transcript|NON_CODING|ENST00000380334|2|1),INTRON(MODIFIER|||||CA5BP1|processed_transcript|NON_CODING|ENST00000380336|2|1),INTRON(MODIFIER|||||CA5BP1|processed_transcript|NON_CODING|ENST00000448692|3|1),INTRON(MODIFIER|||||CA5BP1|unprocessed_pseudogene|NON_CODING|ENST00000435806|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:0:0:0:39,39:0,0:0,0:0,0	102:3:0:0:93,96:0,0:6,6:0,0
X	16944296	.	C	G	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:1:0:0:0,0:36,37:0,0:0,0	103:6:0:0:0,0:89,95:8,8:0,0
X	16944320	.	T	G	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:2:0:0:0,0:0,0:0,0:35,37	109:6:0:0:0,1:0,0:9,9:94,99
X	16944325	.	C	T	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:0:0:0:0,0:36,36:0,0:0,0	111:6:0:0:0,0:94,100:0,0:11,11
X	18123244	.	C	A	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||RP3-410B11.1|lincRNA|NON_CODING|ENST00000453902||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:0:0:0:0,0:37,41:0,0:0,0	80:1:0:0:9,9:70,83:0,0:0,0
X	18125585	rs201670437	C	T	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||RP3-410B11.1|lincRNA|NON_CODING|ENST00000453902||1);RSPOS=18125585;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	43:0:0:0:0,0:43,46:0,0:0,0	116:1:0:0:0,0:106,121:0,0:9,10
X	18324988	.	T	A	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||700|SCML2|protein_coding|CODING|ENST00000251900|6|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:0:0:0:0,0:0,0:0,0:37,37	92:3:0:0:8,9:0,0:0,0:81,83
X	18684795	.	G	A	.	PASS	NT=ref;QSS=24;QSS_NT=24;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||224|RS1|protein_coding|CODING|ENST00000379984|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	47:0:0:0:0,0:0,0:47,47:0,0	118:0:0:0:9,9:0,0:109,109:0,0
X	21640960	.	T	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1004|CNKSR2|protein_coding|CODING|ENST00000425654|19|1),INTRON(MODIFIER||||1034|CNKSR2|protein_coding|CODING|ENST00000379510|20|1),INTRON(MODIFIER||||849|CNKSR2|protein_coding|CODING|ENST00000543067|19|1),INTRON(MODIFIER||||898|CNKSR2|protein_coding|CODING|ENST00000279451|20|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:0:0:0:0,0:0,0:0,0:29,29	129:1:0:0:0,0:11,11:0,0:117,118
X	21824864	rs138066814	G	T	.	PASS	NT=ref;QSS=25;QSS_NT=25;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=21824864;GMAF=0.0446052;dbSNPBuildID=134;SSR=0;SAO=0;VP=050000000005000014000100;WGT=1;VC=SNV;ASP;KGPhase1;KGPROD	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	50:0:0:0:0,0:0,0:50,50:0,0	100:1:0:0:0,0:0,0:88,90:11,11
X	22606575	.	C	T	.	PASS	NT=ref;QSS=24;QSS_NT=24;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-40F8.2|processed_transcript|NON_CODING|ENST00000455399|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	47:0:0:0:0,0:47,47:0,0:0,0	106:1:0:0:0,0:97,98:0,0:8,8
X	24065859	.	T	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:0:0:0:0,0:0,0:0,0:34,34	81:0:0:0:0,0:4,4:0,0:77,78
X	24988776	.	C	G	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1462|POLA1|protein_coding|CODING|ENST00000379059|36|1),INTRON(MODIFIER||||1468|POLA1|protein_coding|CODING|ENST00000379068|36|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	43:0:0:0:0,0:43,43:0,0:0,0	106:3:0:0:0,0:98,100:5,6:0,0
X	25335798	.	C	T	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	42:1:0:0:0,0:41,42:0,0:0,0	130:1:0:0:0,0:112,113:0,0:17,22
X	26608828	.	G	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:0:0:0:0,0:0,0:30,30:0,0	87:3:0:0:0,0:0,0:79,82:5,5
X	26756027	.	C	A	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:0:0:0:0,0:40,40:0,0:0,0	110:1:0:0:11,11:98,99:0,0:0,0
X	26838311	.	G	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:1:0:0:0,0:0,0:30,31:0,0	80:1:0:0:0,0:0,0:73,74:6,6
X	27028854	.	G	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:0:0:0:0,0:0,0:32,32:0,0	91:0:0:0:8,8:0,0:83,84:0,0
X	27216537	.	G	A	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-268G12.1|processed_transcript|NON_CODING|ENST00000422048|4|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:0:0:0:0,0:0,0:39,39:0,0	131:1:0:0:8,10:0,1:122,123:0,0
X	27382441	.	G	T	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-268G12.1|processed_transcript|NON_CODING|ENST00000422048|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	41:0:0:0:0,0:0,0:41,41:0,0	91:0:0:0:0,0:0,0:81,83:10,10
X	27476668	.	G	A	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||SMEK3P|processed_pseudogene|NON_CODING|ENST00000412172||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	43:3:0:0:0,2:0,1:40,45:0,0	89:12:0:0:9,17:0,1:68,81:0,0
X	28428278	.	T	C	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	44:0:0:0:0,0:0,0:1,1:43,43	127:3:0:0:0,0:14,15:0,0:110,112
X	28498613	.	C	G	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	45:0:0:0:0,0:45,45:0,0:0,0	93:1:0:0:0,0:86,87:6,6:0,0
X	28972433	.	T	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||696|IL1RAPL1|protein_coding|CODING|ENST00000302196|1|1),INTRON(MODIFIER||||696|IL1RAPL1|protein_coding|CODING|ENST00000378993|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:0:0:0:0,0:0,0:0,0:30,30	104:2:0:0:0,0:6,6:0,1:96,98
X	29351533	.	C	T	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||696|IL1RAPL1|protein_coding|CODING|ENST00000302196|2|1),INTRON(MODIFIER||||696|IL1RAPL1|protein_coding|CODING|ENST00000378993|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	45:4:0:0:0,0:38,61:3,5:0,0	74:6:0:0:0,0:62,108:0,0:6,10
X	30159593	.	T	A	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:0:0:0:0,0:0,0:0,0:36,36	99:0:0:0:10,10:0,0:0,0:89,89
X	30334615	.	A	C	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||AC005926.1|miRNA|NON_CODING|ENST00000582731||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:0:0:0:37,37:0,0:0,0:0,0	104:1:0:0:96,97:7,7:0,0:0,0
X	31099821	.	G	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:1:0:0:0,0:0,0:38,39:0,0	110:2:0:0:0,1:0,0:102,104:6,7
X	31955254	.	G	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1115|DMD|protein_coding|CODING|ENST00000541735|2|1),INTRON(MODIFIER||||1133|DMD|protein_coding|CODING|ENST00000343523|2|1),INTRON(MODIFIER||||1225|DMD|protein_coding|CODING|ENST00000378707|2|1),INTRON(MODIFIER||||1230|DMD|protein_coding|CODING|ENST00000359836|2|1),INTRON(MODIFIER||||1243|DMD|protein_coding|CODING|ENST00000474231|2|1),INTRON(MODIFIER||||3681|DMD|protein_coding|CODING|ENST00000378677|45|1),INTRON(MODIFIER||||3685|DMD|protein_coding|CODING|ENST00000357033|45|1),INTRON(MODIFIER|||||DMD|processed_transcript|CODING|ENST00000488902|4|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:0:0:0:0,0:0,0:34,34:0,0	102:0:0:0:1,1:0,0:91,91:10,10
X	32584926	.	A	G	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||100|DMD|protein_coding|CODING|ENST00000420596|2|1),INTRON(MODIFIER||||3681|DMD|protein_coding|CODING|ENST00000378677|15|1),INTRON(MODIFIER||||3685|DMD|protein_coding|CODING|ENST00000357033|15|1),INTRON(MODIFIER||||40|DMD|protein_coding|CODING|ENST00000448370|2|1),INTRON(MODIFIER||||772|DMD|protein_coding|CODING|ENST00000288447|15|1),INTRON(MODIFIER|||||DMD|processed_transcript|CODING|ENST00000488902|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:1:0:0:36,37:0,0:0,0:0,0	117:0:0:0:110,111:0,0:7,7:0,0
X	33198839	.	C	A	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||100|DMD|protein_coding|CODING|ENST00000420596|1|1),INTRON(MODIFIER||||3685|DMD|protein_coding|CODING|ENST00000357033|1|1),INTRON(MODIFIER||||40|DMD|protein_coding|CODING|ENST00000448370|1|1),INTRON(MODIFIER||||772|DMD|protein_coding|CODING|ENST00000288447|1|1),INTRON(MODIFIER|||||DMD|processed_transcript|CODING|ENST00000463609|1|1),INTRON(MODIFIER|||||DMD|processed_transcript|CODING|ENST00000488902|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:1:0:0:0,0:36,37:0,0:0,1	114:1:0:0:9,9:104,106:0,0:0,0
X	33406234	.	G	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:0:0:0:0,0:0,0:30,30:0,0	107:1:0:0:0,0:7,7:99,100:0,0
X	34211874	.	C	A	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	42:0:0:0:0,0:42,43:0,0:0,0	116:3:0:0:10,10:103,106:0,1:0,0
X	35021008	.	G	T	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	44:0:0:0:0,0:0,0:44,44:0,0	84:0:0:0:0,0:0,0:80,80:4,4
X	35180091	.	G	T	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	43:0:0:0:0,0:0,0:43,43:0,0	110:1:0:0:0,0:0,0:102,103:7,7
X	35316103	.	G	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:0:0:0:0,0:0,0:29,29:0,0	103:1:0:0:0,0:5,6:97,97:0,0
X	35543963	.	T	A	.	PASS	NT=ref;QSS=23;QSS_NT=23;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	46:0:0:0:0,0:0,0:0,0:46,47	105:1:0:0:9,9:0,0:0,0:95,97
X	37704500	.	C	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||116|DYNLT3|protein_coding|CODING|ENST00000378578|2|1),INTRON(MODIFIER||||122|DYNLT3|protein_coding|CODING|ENST00000432389|2|1),INTRON(MODIFIER||||152|DYNLT3|protein_coding|CODING|ENST00000378581|2|1),INTRON(MODIFIER||||279|RP5-972B16.2|protein_coding|CODING|ENST00000465127|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:0:0:0:0,0:34,34:0,0:0,0	112:1:0:0:0,0:105,106:0,0:6,6
X	38768975	rs201399980	G	A	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=38768975;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	42:0:0:0:0,0:0,0:42,42:0,0	84:2:0:0:7,10:0,0:75,78:0,0
X	38769019	rs199757123	G	T	.	PASS	NT=ref;QSS=23;QSS_NT=23;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=38769019;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	45:0:0:0:0,0:0,0:45,45:0,0	94:1:0:0:0,0:0,0:83,85:10,14
X	38993662	.	C	T	.	PASS	NT=ref;QSS=31;QSS_NT=31;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	41:0:0:0:0,0:41,41:0,0:0,0	111:1:0:0:0,0:91,92:0,0:19,19
X	39138489	.	G	C	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-265P11.1|lincRNA|NON_CODING|ENST00000438026|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:0:0:0:0,0:0,0:35,35:0,0	91:0:0:0:0,0:7,7:84,84:0,0
X	42287549	.	T	C	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP1-154K9.2|processed_transcript|NON_CODING|ENST00000411879|4|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:0:0:0:0,0:0,0:0,0:33,34	106:2:0:0:0,1:12,12:0,1:92,96
X	44385244	.	G	A	.	PASS	NT=ref;QSS=25;QSS_NT=25;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||155|FUNDC1|protein_coding|CODING|ENST00000378045|4|1),INTRON(MODIFIER|||||FUNDC1|processed_transcript|CODING|ENST00000483115|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	50:0:0:0:0,0:0,0:50,50:0,0	110:4:0:0:5,6:0,0:100,103:1,2
X	45014357	.	A	G	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||433|CXorf36|protein_coding|CODING|ENST00000398000|3|1),INTRON(MODIFIER|||||CXorf36|processed_transcript|CODING|ENST00000477281|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	44:2:0:0:42,44:0,0:0,0:0,0	131:4:0:0:119,123:0,0:8,11:0,0
X	45523759	.	C	T	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:0:0:0:0,0:39,43:0,0:0,0	107:0:0:0:0,0:101,117:0,0:6,14
X	47975159	.	G	T	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||SSX6|retained_intron|CODING|ENST00000412590||1),INTRON(MODIFIER||||188|SSX6|protein_coding|CODING|ENST00000376932|5|1),INTRON(MODIFIER||||90|SSX6|protein_coding|CODING|ENST00000319275|5|1),UPSTREAM(MODIFIER|||||SSX6|nonsense_mediated_decay|CODING|ENST00000509958||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	60:2:0:0:0,0:0,0:57,60:1,1	133:11:0:0:0,0:0,2:113,127:9,11
X	48593596	.	C	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||AF196970.3|antisense|NON_CODING|ENST00000416061|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	45:0:0:0:0,0:44,45:0,0:1,1	90:0:0:0:0,0:83,83:0,0:7,9
X	50418004	.	G	C	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1493|SHROOM4|protein_coding|CODING|ENST00000289292|2|1),INTRON(MODIFIER||||1493|SHROOM4|protein_coding|CODING|ENST00000376020|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:0:0:0:0,0:0,0:33,33:0,0	100:0:0:0:0,0:10,10:90,90:0,0
X	50778967	.	G	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||RP11-104D21.1|unprocessed_pseudogene|NON_CODING|ENST00000439389||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:0:0:0:0,0:0,0:29,29:0,0	81:1:0:0:7,7:0,0:73,74:0,0
X	51023294	.	C	T	.	PASS	NT=ref;QSS=41;QSS_NT=41;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	86:1:0:0:0,0:85,88:0,0:0,0	104:3:0:0:0,0:95,103:0,0:6,6
X	51131345	.	G	T	.	PASS	NT=ref;QSS=23;QSS_NT=23;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-348F1.3|antisense|NON_CODING|ENST00000425150|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	46:0:0:0:0,0:0,0:46,46:0,0	85:1:0:0:0,0:0,0:76,77:8,8
X	52594279	.	C	G	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||RP13-34L8.8|unprocessed_pseudogene|NON_CODING|ENST00000423750||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:0:0:0:0,0:39,39:0,0:0,0	93:0:0:0:0,0:85,86:8,8:0,0
X	53482608	.	C	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||RP3-339A18.3|processed_pseudogene|NON_CODING|ENST00000425348||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:0:0:0:0,0:38,39:0,0:0,0	87:1:0:0:0,1:80,80:6,6:0,0
X	53815107	.	A	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:1:0:0:39,40:0,0:0,0:0,1	105:1:0:0:98,101:0,0:0,0:6,7
X	54196861	.	C	T	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||238|FAM120C|protein_coding|CODING|ENST00000477084||1),DOWNSTREAM(MODIFIER|||||FAM120C|processed_transcript|CODING|ENST00000497680||1),INTRON(MODIFIER||||1096|FAM120C|protein_coding|CODING|ENST00000375180|1|1),INTRON(MODIFIER||||895|FAM120C|protein_coding|CODING|ENST00000328235|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	43:0:0:0:0,0:43,43:0,0:0,0	94:0:0:0:0,0:89,90:0,0:5,5
X	54401563	.	G	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:0:0:0:0,0:0,0:29,31:0,0	93:0:0:0:6,6:0,0:87,89:0,0
X	54680900	.	A	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:0:0:0:34,35:0,0:0,0:0,0	129:1:0:0:121,121:7,7:0,1:0,0
X	58188224	.	A	G	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:0:0:0:34,35:0,0:0,0:0,0	114:1:0:0:104,104:0,0:9,10:0,0
X	58241838	.	A	G	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:0:0:0:39,39:0,0:0,0:0,0	101:3:0:0:93,94:0,0:5,7:0,0
X	58297771	.	G	A	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	45:2:0:0:0,0:0,0:43,44:0,0	91:7:0:0:5,8:0,0:79,85:0,0
X	58474867	.	A	T	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	61:3:0:0:58,92:0,0:0,0:0,1	149:16:0:0:125,233:0,0:2,2:6,17
X	58532575	.	C	T	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	52:1:0:0:0,0:51,73:0,0:0,2	114:5:0:0:0,0:103,151:0,0:6,19
X	58559809	rs200557336	G	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->GT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=58559809;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	84:14:5:0:0,0:0,1:70,162:0,8	167:23:13:0:0,0:0,4:130,313:14,43
X	58563576	.	T	C	.	PASS	NT=ref;QSS=25;QSS_NT=25;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	50:1:0:0:0,0:0,0:0,0:49,52	100:2:0:0:0,0:5,6:1,1:92,96
X	61682357	.	G	C	.	PASS	NT=ref;QSS=48;QSS_NT=48;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	105:2:0:0:0,2:0,0:103,193:0,1	228:2:0:0:0,1:12,21:214,388:0,0
X	61685974	.	G	A	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	44:2:0:0:0,0:0,0:42,48:0,0	101:2:0:0:5,8:1,1:92,105:1,1
X	61685975	.	G	A	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	45:2:0:0:0,0:0,0:43,49:0,0	102:2:0:0:5,8:0,0:94,107:1,1
X	61685978	.	T	A	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	44:2:0:0:0,0:0,0:0,0:42,48	103:1:0:0:5,8:0,0:0,0:97,109
X	61686011	rs75814051	C	A	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=61686011;dbSNPBuildID=131;SSR=0;SAO=0;VP=050100000005040102000100;WGT=1;VC=SNV;SLO;ASP;VLD;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	44:1:0:0:0,0:42,47:1,1:0,0	107:1:0:0:7,13:99,111:0,0:0,0
X	61686041	rs200126783	A	C	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=61686041;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:0:0:0:39,42:0,0:0,0:0,0	110:2:0:0:101,112:7,12:0,0:0,0
X	61687750	.	C	T	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	65:1:0:0:0,0:63,93:0,0:1,1	132:3:0:0:0,0:122,174:0,0:7,9
X	61710463	.	G	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	103:0:0:0:0,0:1,5:100,192:2,2	230:1:0:0:0,0:2,6:216,398:11,13
X	61715448	.	A	C	.	PASS	NT=ref;QSS=35;QSS_NT=35;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	93:3:0:0:89,127:1,2:0,0:0,0	184:6:0:0:171,243:7,9:0,0:0,3
X	61724858	.	G	T	.	PASS	NT=ref;QSS=23;QSS_NT=23;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	44:1:0:0:0,0:0,0:43,45:0,0	90:1:0:0:0,0:0,0:77,78:12,14
X	61816993	.	T	A	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	41:1:0:0:0,0:0,0:0,0:40,40	117:1:0:0:6,8:0,0:0,0:110,111
X	61817808	.	C	A	.	PASS	NT=ref;QSS=32;QSS_NT=32;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	72:6:0:0:0,1:66,146:0,1:0,0	221:40:0:0:16,26:163,397:2,4:0,7
X	61822376	.	C	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->AC;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	50:10:0:0:0,4:39,110:1,1:0,1	146:24:0:0:5,8:114,257:3,5:0,3
X	61826468	.	C	T	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	57:12:0:0:1,4:44,91:0,1:0,1	158:26:0:0:0,14:123,281:1,3:8,14
X	61852629	.	G	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	60:14:0:0:0,0:0,2:45,148:1,2	188:28:2:0:0,1:0,1:148,414:12,17
X	61893675	.	A	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:1:0:0:29,39:0,0:0,0:0,0	126:1:0:0:118,142:6,10:1,1:0,0
X	62343220	.	A	G	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	41:0:0:0:41,42:0,0:0,0:0,0	93:0:0:0:85,87:1,1:7,7:0,0
X	62742628	.	C	T	.	PASS	NT=ref;QSS=23;QSS_NT=23;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-357C3.3|processed_transcript|NON_CODING|ENST00000433061|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	45:0:0:0:0,0:45,47:0,0:0,0	120:0:0:0:0,0:112,115:0,0:8,9
X	65317281	.	C	T	.	PASS	NT=ref;QSS=25;QSS_NT=25;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	56:4:6:0:0,0:50,70:2,2:0,0	122:12:4:0:0,0:99,152:1,1:10,12
X	66239799	.	T	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:0:0:0:0,0:0,0:0,0:30,30	102:1:0:0:0,0:5,5:0,0:96,98
X	67275809	.	C	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||694|OPHN1|protein_coding|CODING|ENST00000540071|20|1),INTRON(MODIFIER||||802|OPHN1|protein_coding|CODING|ENST00000355520|21|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:0:0:0:0,0:34,34:0,0:0,0	119:1:0:0:1,1:105,106:0,0:12,12
X	67574119	.	T	A	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||694|OPHN1|protein_coding|CODING|ENST00000540071|2|1),INTRON(MODIFIER||||802|OPHN1|protein_coding|CODING|ENST00000355520|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:1:0:0:0,0:0,0:0,0:38,40	81:2:0:0:5,5:0,0:0,0:74,78
X	67855166	.	C	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:0:0:0:0,0:33,34:0,0:0,0	104:1:0:0:5,5:98,99:0,0:0,0
X	67872731	.	C	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1023|STARD8|protein_coding|CODING|ENST00000252336|1|1),INTRON(MODIFIER||||1103|STARD8|protein_coding|CODING|ENST00000374599|1|1),INTRON(MODIFIER|||||STARD8|nonsense_mediated_decay|CODING|ENST00000523864|1|1),INTRON(MODIFIER|||||STARD8|processed_transcript|CODING|ENST00000488088|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:5:5:0:0,1:35,59:0,0:0,0	114:19:8:0:11,14:84,147:0,0:0,0
X	67872911	.	C	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->AC;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER||||1023|STARD8|protein_coding|CODING|ENST00000252336|1|1),INTRON(MODIFIER||||1103|STARD8|protein_coding|CODING|ENST00000374599|1|1),INTRON(MODIFIER|||||STARD8|nonsense_mediated_decay|CODING|ENST00000523864|1|1),INTRON(MODIFIER|||||STARD8|processed_transcript|CODING|ENST00000488088|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	93:30:4:0:0,4:63,161:0,2:0,3	194:60:15:0:9,15:125,361:0,0:0,6
X	67873101	.	C	T	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1023|STARD8|protein_coding|CODING|ENST00000252336|1|1),INTRON(MODIFIER||||1103|STARD8|protein_coding|CODING|ENST00000374599|1|1),INTRON(MODIFIER|||||STARD8|nonsense_mediated_decay|CODING|ENST00000523864|1|1),INTRON(MODIFIER|||||STARD8|processed_transcript|CODING|ENST00000488088|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	62:14:0:0:0,0:47,88:0,0:1,2	129:25:0:0:0,1:89,193:0,0:15,26
X	69707632	.	G	A	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||366|DLG3|protein_coding|CODING|ENST00000542398|2|1),INTRON(MODIFIER||||512|DLG3|protein_coding|CODING|ENST00000374355|4|1),INTRON(MODIFIER||||817|DLG3|protein_coding|CODING|ENST00000374360|10|1),INTRON(MODIFIER||||849|DLG3|protein_coding|CODING|ENST00000194900|11|1),INTRON(MODIFIER|||||DLG3|processed_transcript|CODING|ENST00000466140|1|1),INTRON(MODIFIER|||||DLG3|processed_transcript|CODING|ENST00000489733|2|1),INTRON(MODIFIER|||||DLG3|processed_transcript|CODING|ENST00000494493|3|1),INTRON(MODIFIER|||||DLG3|retained_intron|CODING|ENST00000463252|9|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:1:0:0:0,0:0,0:36,38:0,0	111:2:0:0:5,5:0,0:104,108:0,0
X	69707639	.	T	C	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||366|DLG3|protein_coding|CODING|ENST00000542398|2|1),INTRON(MODIFIER||||512|DLG3|protein_coding|CODING|ENST00000374355|4|1),INTRON(MODIFIER||||817|DLG3|protein_coding|CODING|ENST00000374360|10|1),INTRON(MODIFIER||||849|DLG3|protein_coding|CODING|ENST00000194900|11|1),INTRON(MODIFIER|||||DLG3|processed_transcript|CODING|ENST00000466140|1|1),INTRON(MODIFIER|||||DLG3|processed_transcript|CODING|ENST00000489733|2|1),INTRON(MODIFIER|||||DLG3|processed_transcript|CODING|ENST00000494493|3|1),INTRON(MODIFIER|||||DLG3|retained_intron|CODING|ENST00000463252|9|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:1:0:0:0,0:0,0:1,2:35,36	113:2:0:0:0,0:8,9:0,0:103,106
X	70470782	.	A	T	.	PASS	NT=ref;QSS=25;QSS_NT=25;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1280|ZMYM3|protein_coding|CODING|ENST00000373984|4|1),INTRON(MODIFIER||||1358|ZMYM3|protein_coding|CODING|ENST00000373998|4|1),INTRON(MODIFIER||||1370|ZMYM3|protein_coding|CODING|ENST00000314425|4|1),INTRON(MODIFIER||||1370|ZMYM3|protein_coding|CODING|ENST00000353904|4|1),INTRON(MODIFIER||||1372|ZMYM3|protein_coding|CODING|ENST00000373988|4|1),INTRON(MODIFIER||||349|ZMYM3|protein_coding|CODING|ENST00000373978|4|1),INTRON(MODIFIER||||495|ZMYM3|protein_coding|CODING|ENST00000373981|4|1),INTRON(MODIFIER||||497|ZMYM3|protein_coding|CODING|ENST00000373982|4|1),INTRON(MODIFIER|||||ZMYM3|processed_transcript|CODING|ENST00000460139|2|1),INTRON(MODIFIER|||||ZMYM3|processed_transcript|CODING|ENST00000489332|4|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	51:1:0:0:50,52:0,0:0,0:0,0	106:1:0:0:98,99:0,0:0,0:7,7
X	71053784	.	G	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	48:0:0:0:1,1:0,0:47,47:0,0	120:1:0:0:5,6:0,0:114,116:0,0
X	71854569	.	C	T	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1151|PHKA1|protein_coding|CODING|ENST00000541944|16|1),INTRON(MODIFIER||||1181|PHKA1|protein_coding|CODING|ENST00000373545|16|1),INTRON(MODIFIER||||1210|PHKA1|protein_coding|CODING|ENST00000339490|16|1),INTRON(MODIFIER||||1223|PHKA1|protein_coding|CODING|ENST00000373542|16|1),INTRON(MODIFIER||||1240|PHKA1|protein_coding|CODING|ENST00000373539|16|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:0:0:0:0,0:36,36:0,0:0,0	101:1:0:0:0,0:89,90:0,0:11,12
X	72921413	.	G	T	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:2:0:0:0,1:0,0:37,38:0,0	89:4:0:0:0,1:0,1:75,80:10,10
X	73664163	.	G	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||539|SLC16A2|protein_coding|CODING|ENST00000587091|1|1),INTRON(MODIFIER||||613|SLC16A2|protein_coding|CODING|ENST00000276033|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	44:2:0:0:0,0:0,0:42,44:0,0	108:2:0:0:0,0:8,9:98,99:0,0
X	73860425	.	G	A	.	PASS	NT=ref;QSS=24;QSS_NT=24;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	48:0:0:0:0,0:1,1:47,47:0,0	98:0:0:0:8,8:0,0:90,90:0,0
X	74393069	.	A	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	52:1:0:0:51,52:0,0:0,0:0,0	99:1:0:0:91,92:0,0:0,0:7,7
X	74612294	.	T	A	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||187|ZDHHC15|protein_coding|CODING|ENST00000373361|9|1),INTRON(MODIFIER||||328|ZDHHC15|protein_coding|CODING|ENST00000541184|9|1),INTRON(MODIFIER||||337|ZDHHC15|protein_coding|CODING|ENST00000373367|10|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:0:0:0:0,0:0,0:0,0:37,37	110:2:0:0:10,11:0,1:0,0:98,100
X	77576525	.	C	A	.	PASS	NT=ref;QSS=23;QSS_NT=23;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=EXON(MODIFIER|||||CYSLTR1|processed_transcript|CODING|ENST00000493254|2|1),INTRON(MODIFIER||||337|CYSLTR1|protein_coding|CODING|ENST00000373304|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	45:1:0:0:0,0:44,45:0,0:0,0	105:0:0:0:13,13:91,91:0,0:1,1
X	78427885	.	G	A	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||333|GPR174|protein_coding|CODING|ENST00000276077||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:0:0:0:0,0:0,0:35,35:0,0	100:1:0:0:8,8:0,0:91,92:0,0
X	78542474	.	C	A	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:0:0:0:0,0:35,35:0,0:0,0	117:1:0:0:9,9:107,109:0,0:0,0
X	78599956	.	G	A	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:1:0:0:0,0:0,0:39,40:0,0	88:1:0:0:9,10:0,0:78,78:0,0
X	78974671	.	C	T	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:0:0:0:0,0:37,38:0,0:0,0	86:0:0:0:0,0:80,80:0,0:6,6
X	79470252	.	C	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	55:3:0:0:0,0:52,57:0,1:0,1	106:2:0:0:0,0:98,119:0,1:6,6
X	79470385	.	A	G	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:1:0:0:37,40:0,0:0,0:0,0	81:1:0:0:71,77:2,2:7,8:0,0
X	79470389	.	T	A	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:0:0:0:0,0:0,0:0,0:36,38	79:1:0:0:6,7:1,1:0,0:71,77
X	79607904	.	G	A	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||389|FAM46D|protein_coding|CODING|ENST00000538312|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	43:0:0:0:0,0:0,0:43,43:0,0	79:2:0:0:7,8:0,0:70,71:0,0
X	80919277	.	G	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	28:0:0:0:0,0:0,0:28,28:0,0	79:5:0:0:0,0:4,4:70,75:0,0
X	81076601	.	C	G	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:0:0:0:0,0:33,33:0,0:0,0	107:0:0:0:0,0:102,103:5,5:0,0
X	81082927	.	G	A	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	43:0:0:0:0,0:0,0:43,43:0,0	92:0:0:0:7,7:0,0:85,85:0,0
X	81117619	.	G	A	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:0:0:0:0,0:0,0:38,38:0,0	97:1:0:0:8,9:0,0:88,88:0,0
X	82404720	.	C	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:0:0:0:0,0:32,32:0,0:0,0	127:2:0:0:12,13:113,114:0,0:0,0
X	84085883	.	A	G	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:4:0:0:34,38:0,0:0,0:0,0	116:2:0:0:107,109:0,0:6,6:1,1
X	84669149	.	G	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:0:0:0:0,0:0,0:29,29:0,0	100:0:0:0:0,0:9,9:91,91:0,0
X	84906280	.	A	T	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:0:0:0:37,37:0,0:0,0:0,0	93:0:0:0:87,87:0,0:0,0:6,6
X	85227677	.	C	T	.	PASS	NT=ref;QSS=26;QSS_NT=26;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||110|CHM|protein_coding|CODING|ENST00000358786|4|1),INTRON(MODIFIER||||505|CHM|protein_coding|CODING|ENST00000537751|1|1),INTRON(MODIFIER||||653|CHM|protein_coding|CODING|ENST00000357749|4|1),INTRON(MODIFIER|||||CHM|processed_transcript|CODING|ENST00000467744|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	51:0:0:0:0,0:51,52:0,0:0,0	105:2:0:0:0,0:94,97:0,0:9,9
X	85319925	rs61268561	G	A	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||RP6-145B8.2|processed_pseudogene|NON_CODING|ENST00000452914||1),INTERGENIC(MODIFIER||||||||||1);RSPOS=85319925;GMAF=0.00602773;dbSNPBuildID=129;SSR=0;SAO=0;VP=05000000000104011e000100;WGT=1;VC=SNV;VLD;GNO;KGPhase1;KGPilot123;KGPROD;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:0:0:0:0,0:1,1:33,33:0,0	110:1:0:0:14,14:0,1:95,95:0,0
X	85564607	.	G	A	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||GEMIN8P3|processed_pseudogene|NON_CODING|ENST00000445417||1),INTRON(MODIFIER||||380|DACH2|protein_coding|CODING|ENST00000510272|1|1),INTRON(MODIFIER||||432|DACH2|protein_coding|CODING|ENST00000508860|1|1),INTRON(MODIFIER||||571|DACH2|protein_coding|CODING|ENST00000373131|1|1),INTRON(MODIFIER||||599|DACH2|protein_coding|CODING|ENST00000373125|1|1),INTRON(MODIFIER|||||DACH2|nonsense_mediated_decay|CODING|ENST00000461604|1|1),INTRON(MODIFIER|||||DACH2|nonsense_mediated_decay|CODING|ENST00000506327|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:1:0:0:0,0:0,0:39,40:0,0	103:2:0:0:9,9:0,0:92,95:0,0
X	85653402	.	C	T	.	PASS	NT=ref;QSS=24;QSS_NT=24;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||380|DACH2|protein_coding|CODING|ENST00000510272|1|1),INTRON(MODIFIER||||432|DACH2|protein_coding|CODING|ENST00000508860|2|1),INTRON(MODIFIER||||571|DACH2|protein_coding|CODING|ENST00000373131|1|1),INTRON(MODIFIER||||599|DACH2|protein_coding|CODING|ENST00000373125|2|1),INTRON(MODIFIER|||||DACH2|nonsense_mediated_decay|CODING|ENST00000461604|2|1),INTRON(MODIFIER|||||DACH2|nonsense_mediated_decay|CODING|ENST00000506327|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	47:0:0:0:0,0:47,47:0,0:0,0	115:0:0:0:0,0:106,110:0,0:9,13
X	85653413	.	G	A	.	PASS	NT=ref;QSS=24;QSS_NT=24;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||380|DACH2|protein_coding|CODING|ENST00000510272|1|1),INTRON(MODIFIER||||432|DACH2|protein_coding|CODING|ENST00000508860|2|1),INTRON(MODIFIER||||571|DACH2|protein_coding|CODING|ENST00000373131|1|1),INTRON(MODIFIER||||599|DACH2|protein_coding|CODING|ENST00000373125|2|1),INTRON(MODIFIER|||||DACH2|nonsense_mediated_decay|CODING|ENST00000461604|2|1),INTRON(MODIFIER|||||DACH2|nonsense_mediated_decay|CODING|ENST00000506327|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	48:0:0:0:0,0:0,0:48,48:0,0	118:0:0:0:9,13:0,0:108,111:1,1
X	85653431	.	C	T	.	PASS	NT=ref;QSS=25;QSS_NT=25;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||380|DACH2|protein_coding|CODING|ENST00000510272|1|1),INTRON(MODIFIER||||432|DACH2|protein_coding|CODING|ENST00000508860|2|1),INTRON(MODIFIER||||571|DACH2|protein_coding|CODING|ENST00000373131|1|1),INTRON(MODIFIER||||599|DACH2|protein_coding|CODING|ENST00000373125|2|1),INTRON(MODIFIER|||||DACH2|nonsense_mediated_decay|CODING|ENST00000461604|2|1),INTRON(MODIFIER|||||DACH2|nonsense_mediated_decay|CODING|ENST00000506327|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	49:0:0:0:0,0:49,49:0,0:0,0	115:0:0:0:0,0:106,108:1,1:8,12
X	85988159	.	C	A	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||249|DACH2|protein_coding|CODING|ENST00000484479|1|1),INTRON(MODIFIER||||380|DACH2|protein_coding|CODING|ENST00000510272|5|1),INTRON(MODIFIER||||432|DACH2|protein_coding|CODING|ENST00000508860|6|1),INTRON(MODIFIER||||571|DACH2|protein_coding|CODING|ENST00000373131|5|1),INTRON(MODIFIER||||599|DACH2|protein_coding|CODING|ENST00000373125|6|1),INTRON(MODIFIER|||||DACH2|nonsense_mediated_decay|CODING|ENST00000461604|6|1),INTRON(MODIFIER|||||DACH2|nonsense_mediated_decay|CODING|ENST00000506327|6|1),UPSTREAM(MODIFIER|||||DACH2|processed_transcript|CODING|ENST00000477378||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:0:0:0:0,0:33,33:0,0:0,0	109:1:0:0:13,14:95,95:0,0:0,0
X	86127262	.	A	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:0:0:0:31,33:0,0:1,1:0,0	106:0:0:0:101,103:0,0:0,0:5,5
X	86399510	.	A	G	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||SNORD45|snoRNA|NON_CODING|ENST00000363552||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:3:0:0:36,40:0,0:0,0:0,0	94:13:0:0:77,90:0,0:4,4:0,0
X	86944958	.	C	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:0:0:0:0,0:29,29:0,0:0,0	101:5:0:0:0,0:91,96:0,0:5,5
X	87658251	.	C	T	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	43:0:0:0:0,0:43,43:0,0:0,0	121:2:0:0:0,0:113,114:0,1:6,6
X	88020148	.	T	G	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:0:0:0:0,0:0,0:0,0:38,38	118:2:0:0:0,0:0,0:6,6:110,112
X	88051488	.	T	C	.	PASS	NT=ref;QSS=24;QSS_NT=24;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	47:0:0:0:0,0:0,0:0,0:47,48	116:0:0:0:0,0:11,11:0,0:105,105
X	88177423	.	G	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	42:0:0:0:0,0:0,0:42,42:0,0	100:6:0:0:6,8:0,0:87,92:1,1
X	88459518	.	A	G	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	57:2:0:0:55,63:0,0:0,2:0,0	176:7:0:0:159,199:0,0:9,12:1,1
X	88731083	rs188603453	G	A	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=88731083;GMAF=0.00542495;dbSNPBuildID=135;SSR=0;SAO=0;VP=050000000005000014000100;WGT=1;VC=SNV;ASP;KGPhase1;KGPROD	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	41:0:0:0:0,0:0,0:41,41:0,0	128:2:0:0:10,10:0,0:116,120:0,0
X	89872544	.	C	T	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:0:0:0:0,0:37,37:0,0:0,0	98:2:0:0:1,1:90,92:0,0:5,5
X	90424399	rs201498145	T	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=90424399;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:0:0:0:0,0:0,0:0,0:29,29	121:2:0:0:0,0:0,0:9,9:110,112
X	90715665	.	G	C	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:0:0:0:0,0:0,0:33,33:0,0	108:1:0:0:0,0:13,13:93,94:1,1
X	91512860	.	G	C	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1065|PCDH11X|protein_coding|CODING|ENST00000504220|3|1),INTRON(MODIFIER||||1310|PCDH11X|protein_coding|CODING|ENST00000298274|2|1),INTRON(MODIFIER||||1310|PCDH11X|protein_coding|CODING|ENST00000373088|2|1),INTRON(MODIFIER||||1329|PCDH11X|protein_coding|CODING|ENST00000361655|3|1),INTRON(MODIFIER||||1337|PCDH11X|protein_coding|CODING|ENST00000373097|3|1),INTRON(MODIFIER||||1339|PCDH11X|protein_coding|CODING|ENST00000406881|3|1),INTRON(MODIFIER||||1347|PCDH11X|protein_coding|CODING|ENST00000373094|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:1:0:0:0,0:0,0:39,41:0,0	105:1:0:0:0,0:7,8:97,98:0,0
X	91654809	.	C	T	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1065|PCDH11X|protein_coding|CODING|ENST00000504220|5|1),INTRON(MODIFIER||||1310|PCDH11X|protein_coding|CODING|ENST00000298274|3|1),INTRON(MODIFIER||||1310|PCDH11X|protein_coding|CODING|ENST00000373088|3|1),INTRON(MODIFIER||||1329|PCDH11X|protein_coding|CODING|ENST00000361655|4|1),INTRON(MODIFIER||||1337|PCDH11X|protein_coding|CODING|ENST00000373097|4|1),INTRON(MODIFIER||||1339|PCDH11X|protein_coding|CODING|ENST00000406881|5|1),INTRON(MODIFIER||||1347|PCDH11X|protein_coding|CODING|ENST00000373094|5|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:0:0:0:0,0:39,40:0,0:0,0	92:3:0:0:0,0:84,89:0,0:5,5
X	91944794	.	T	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	25:0:0:0:0,0:0,0:0,0:25,25	74:0:0:0:0,0:13,14:1,1:60,62
X	92317135	.	C	G	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	44:1:0:0:0,0:43,47:0,0:0,0	103:3:0:0:0,0:91,94:9,9:0,0
X	92642396	.	G	A	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||RP3-455H14.1|processed_pseudogene|NON_CODING|ENST00000414840||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	44:0:0:0:0,0:0,0:44,44:0,0	106:0:0:0:5,5:0,0:101,101:0,0
X	92655495	.	G	T	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	41:0:0:0:0,0:0,0:41,41:0,0	96:0:0:0:0,0:0,0:88,88:8,8
X	94339102	.	G	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:0:0:0:0,0:0,0:30,30:0,0	81:6:0:0:6,8:0,0:69,73:0,0
X	94354719	.	T	C	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	43:1:0:0:0,0:0,0:0,0:42,43	117:1:0:0:0,1:12,12:0,0:104,104
X	94546480	.	C	T	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	42:1:0:0:0,0:41,43:0,0:0,0	95:1:0:0:1,2:88,88:0,0:5,5
X	94626928	.	A	T	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	41:0:0:0:41,41:0,0:0,0:0,0	99:1:0:0:92,93:1,1:0,0:5,5
X	95681757	.	A	T	.	PASS	NT=ref;QSS=25;QSS_NT=25;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	46:0:0:0:46,46:0,0:0,0:0,0	105:1:0:0:90,90:0,0:0,1:14,14
X	96925680	.	G	C	.	PASS	NT=ref;QSS=24;QSS_NT=24;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	46:0:0:0:0,0:0,0:46,46:0,0	104:1:0:0:0,0:12,13:91,91:0,0
X	96965700	.	A	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:0:0:0:29,29:0,0:0,0:0,0	80:1:1:0:73,74:6,6:0,0:0,0
X	97239086	.	G	T	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:0:0:0:0,0:0,0:37,37:0,0	109:1:0:0:0,0:0,0:100,100:8,9
X	97557559	.	G	A	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:0:0:0:0,0:0,0:36,40:0,0	111:2:0:0:6,7:0,0:103,109:0,0
X	97736127	.	T	A	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:0:0:0:0,0:0,0:0,0:35,35	97:1:0:0:7,7:0,0:0,0:89,90
X	99513696	.	A	G	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:0:0:0:31,43:0,0:0,0:0,0	125:2:0:0:108,130:0,0:15,29:0,0
X	99513699	.	G	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:0:0:0:0,1:0,0:32,42:0,0	126:2:0:0:15,32:0,0:109,130:0,0
X	99513712	.	T	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:0:0:0:0,0:0,0:0,0:32,44	120:3:0:0:0,2:12,23:0,1:105,124
X	100729276	.	A	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||ARMCX4|nonsense_mediated_decay|CODING|ENST00000433011|4|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	23:0:0:0:23,35:0,0:0,0:0,0	64:0:0:0:55,74:9,9:0,0:0,0
X	102110956	.	G	T	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||LINC00630|processed_transcript|NON_CODING|ENST00000416381|2|1),INTRON(MODIFIER|||||LINC00630|processed_transcript|NON_CODING|ENST00000431616|3|1),INTRON(MODIFIER|||||LINC00630|processed_transcript|NON_CODING|ENST00000440496|6|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:0:0:0:0,0:0,0:38,38:0,0	100:1:0:0:0,0:0,0:94,94:5,5
X	105314235	.	C	G	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||RP11-560L11.1|processed_pseudogene|NON_CODING|ENST00000434586||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:1:0:0:0,0:35,36:0,0:0,0	88:0:0:0:0,0:83,83:5,5:0,0
X	106780984	.	G	A	.	PASS	NT=ref;QSS=25;QSS_NT=25;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1758|FRMPD3|protein_coding|CODING|ENST00000439554|3|1),INTRON(MODIFIER||||1810|FRMPD3|protein_coding|CODING|ENST00000276185|5|1),INTRON(MODIFIER|||||FRMPD3-AS1|antisense|NON_CODING|ENST00000415252|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	50:0:0:0:0,0:0,0:50,50:0,0	96:0:0:0:9,9:0,0:87,87:0,0
X	106846438	.	A	G	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=AA->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=SYNONYMOUS_CODING(LOW|SILENT|caA/caG|Q1704|1758|FRMPD3|protein_coding|CODING|ENST00000439554|14|1),SYNONYMOUS_CODING(LOW|SILENT|caA/caG|Q1756|1810|FRMPD3|protein_coding|CODING|ENST00000276185|16|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	59:0:0:0:59,82:0,0:0,3:0,0	125:5:0:0:113,187:0,0:7,24:0,0
X	108112705	.	C	A	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	41:1:0:0:0,0:40,41:0,0:0,0	100:0:0:0:10,10:90,91:0,0:0,0
X	108358396	rs192549492	G	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=108358396;GMAF=0.272453;dbSNPBuildID=135;SSR=0;SAO=0;VP=050000000005000016000100;WGT=1;VC=SNV;ASP;KGPhase1;KGPROD;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:0:0:0:0,0:0,0:33,35:0,0	99:2:0:0:0,0:0,0:88,94:9,14
X	108745124	.	T	A	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	41:0:0:0:0,0:0,0:0,0:41,41	95:1:0:0:5,5:0,0:0,1:89,89
X	111056632	.	T	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||973|TRPC5|protein_coding|CODING|ENST00000262839|7|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	28:0:0:0:0,0:0,0:0,0:28,28	99:0:0:0:0,0:9,9:0,0:90,90
X	111092982	.	G	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||973|TRPC5|protein_coding|CODING|ENST00000262839|5|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:0:0:0:0,0:0,0:34,34:0,0	97:0:0:0:5,5:0,0:92,92:0,0
X	111536025	.	A	G	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:0:0:0:40,40:0,0:0,0:0,0	91:0:0:0:87,87:0,0:4,4:0,0
X	111997174	.	C	A	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	44:1:0:0:0,0:43,44:0,0:0,0	106:0:0:0:6,6:100,101:0,0:0,0
X	112104060	.	C	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||Metazoa_SRP|misc_RNA|NON_CODING|ENST00000465140||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:2:0:0:0,0:36,36:0,1:0,1	73:13:0:0:0,0:50,55:10,18:0,0
X	112197752	rs12012293	C	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=112197752;dbSNPBuildID=120;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	20:0:0:0:0,0:20,20:0,0:0,0	75:5:0:0:0,0:58,64:0,0:12,17
X	112699966	.	C	T	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:1:0:0:0,0:36,36:0,0:0,0	109:0:0:0:0,0:97,97:1,1:11,11
X	113997449	.	G	T	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||HTR2C-IT1|sense_intronic|NON_CODING|ENST00000435767||1),INTRON(MODIFIER||||248|HTR2C|protein_coding|CODING|ENST00000371950|4|1),INTRON(MODIFIER||||458|HTR2C|protein_coding|CODING|ENST00000276198|4|1),INTRON(MODIFIER||||458|HTR2C|protein_coding|CODING|ENST00000371951|5|1),UPSTREAM(MODIFIER|||||MIR1911|miRNA|NON_CODING|ENST00000410783||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:0:0:0:0,0:0,0:37,37:0,0	85:0:0:0:0,0:0,0:78,78:7,7
X	114137298	.	C	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||248|HTR2C|protein_coding|CODING|ENST00000371950|5|1),INTRON(MODIFIER||||458|HTR2C|protein_coding|CODING|ENST00000276198|5|1),INTRON(MODIFIER||||458|HTR2C|protein_coding|CODING|ENST00000371951|6|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:0:0:0:0,0:32,32:0,0:0,0	88:0:0:0:0,0:78,79:2,2:8,8
X	115121139	.	C	G	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:0:0:0:0,0:34,34:0,0:0,0	99:1:0:0:0,0:90,91:8,8:0,0
X	117184108	.	C	A	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||604|KLHL13|protein_coding|CODING|ENST00000371882|1|1),INTRON(MODIFIER||||613|KLHL13|protein_coding|CODING|ENST00000545703|1|1),INTRON(MODIFIER||||639|KLHL13|protein_coding|CODING|ENST00000540167|1|1),INTRON(MODIFIER||||639|KLHL13|protein_coding|CODING|ENST00000541812|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	43:0:0:0:0,0:43,43:0,0:0,0	113:2:0:0:11,11:100,102:0,0:0,0
X	117457919	rs186117713	T	G	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=117457919;GMAF=0.0898131;dbSNPBuildID=135;SSR=0;SAO=0;VP=050000000005000014000100;WGT=1;VC=SNV;ASP;KGPhase1;KGPROD	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	22:1:4:0:0,0:0,0:0,0:21,23	74:3:10:0:0,0:0,0:12,14:59,60
X	117650676	.	A	G	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||2073|DOCK11|protein_coding|CODING|ENST00000276202|1|1),INTRON(MODIFIER||||2077|DOCK11|protein_coding|CODING|ENST00000276204|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	47:1:0:0:46,48:0,0:0,0:0,0	120:1:0:0:112,113:1,1:5,5:1,1
X	118393662	.	C	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||AKAP16BP|unprocessed_pseudogene|NON_CODING|ENST00000431706||1),UPSTREAM(MODIFIER|||||AKAP16BP|unprocessed_pseudogene|NON_CODING|ENST00000543565||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:0:0:0:0,0:32,34:0,0:0,0	94:2:0:0:0,0:80,85:1,1:11,13
X	118847229	.	G	A	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:3:0:0:0,0:0,0:37,40:0,0	83:2:0:0:5,5:0,0:75,80:1,1
X	120663428	.	G	A	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	43:0:0:0:0,0:0,0:43,43:0,0	108:1:0:0:6,6:0,0:101,102:0,0
X	120889249	.	A	T	.	PASS	NT=ref;QSS=23;QSS_NT=23;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	45:0:0:0:45,45:0,0:0,0:0,0	130:1:0:0:118,119:0,0:0,0:11,11
X	120918600	.	C	A	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:1:0:0:0,0:37,38:0,0:0,0	116:1:0:0:8,8:106,107:0,0:1,1
X	121891856	.	C	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:0:0:0:0,0:39,39:0,0:0,0	115:0:0:0:0,0:109,109:0,0:6,6
X	122415080	.	C	A	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||662|GRIA3|protein_coding|CODING|ENST00000541091|3|1),INTRON(MODIFIER||||824|GRIA3|protein_coding|CODING|ENST00000542149|3|1),INTRON(MODIFIER||||894|GRIA3|protein_coding|CODING|ENST00000264357|3|1),INTRON(MODIFIER||||894|GRIA3|protein_coding|CODING|ENST00000371251|3|1),INTRON(MODIFIER||||894|GRIA3|protein_coding|CODING|ENST00000371256|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:0:0:0:0,0:38,38:0,0:0,0	86:2:0:0:8,8:76,78:0,0:0,0
X	122604059	.	G	T	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||824|GRIA3|protein_coding|CODING|ENST00000542149|14|1),INTRON(MODIFIER||||894|GRIA3|protein_coding|CODING|ENST00000264357|14|1),INTRON(MODIFIER||||894|GRIA3|protein_coding|CODING|ENST00000371251|14|1),INTRON(MODIFIER||||894|GRIA3|protein_coding|CODING|ENST00000371256|13|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	41:0:0:0:0,0:0,0:41,42:0,0	96:0:0:0:0,0:0,0:84,84:12,12
X	122640626	.	G	A	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:0:0:0:0,0:0,0:34,34:0,0	99:0:0:0:8,8:0,0:91,91:0,0
X	122904851	.	C	T	.	PASS	NT=ref;QSS=26;QSS_NT=26;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||RNU7-69P|snRNA|NON_CODING|ENST00000516369||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	51:0:0:0:0,0:51,51:0,0:0,0	108:0:0:0:0,0:99,99:0,0:9,11
X	122904853	.	G	A	.	PASS	NT=ref;QSS=25;QSS_NT=25;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||RNU7-69P|snRNA|NON_CODING|ENST00000516369||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	49:0:0:0:0,0:0,0:49,49:0,0	110:1:0:0:8,10:0,0:101,101:0,0
X	124217929	.	G	T	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	42:0:0:0:0,0:0,0:42,42:0,0	109:1:0:0:0,0:0,0:97,98:11,11
X	124492919	.	G	C	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	44:0:0:0:0,0:0,0:44,44:0,0	86:0:0:0:0,0:7,7:79,79:0,0
X	125154718	rs5006392	T	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=125154718;dbSNPBuildID=113;SSR=0;SAO=0;VP=050000000001000002000100;WGT=1;VC=SNV;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	26:0:0:0:0,0:0,0:0,0:26,26	49:0:0:0:0,0:5,6:0,0:44,44
X	125168403	.	T	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:0:0:0:0,0:0,0:0,0:29,29	111:1:0:0:10,10:1,1:0,0:99,100
X	125286128	.	C	A	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:0:0:0:0,0:37,37:0,0:0,0	111:3:0:0:9,10:99,101:0,0:0,0
X	125522384	.	C	A	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:0:0:0:0,0:38,38:0,0:0,0	97:2:0:0:8,8:87,89:0,0:0,0
X	125606227	.	T	G	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||AL359973.1|miRNA|NON_CODING|ENST00000580761||1),EXON(MODIFIER|||||RP11-10B2.1|processed_pseudogene|NON_CODING|ENST00000441633|1|1),UPSTREAM(MODIFIER|||||MTND4LP1|processed_pseudogene|NON_CODING|ENST00000446263||1),UPSTREAM(MODIFIER|||||MTND4P24|processed_pseudogene|NON_CODING|ENST00000424002||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:0:0:0:0,0:0,0:0,0:34,34	96:0:0:0:0,0:0,0:6,6:90,90
X	126231329	.	C	T	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	41:0:0:0:0,0:41,42:0,0:0,0	105:1:0:0:0,0:96,97:0,0:8,8
X	126533275	.	C	A	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:0:0:0:0,0:40,40:0,0:0,0	117:0:0:0:6,6:111,111:0,0:0,0
X	126781692	.	G	A	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:0:0:0:0,0:0,0:39,39:0,0	109:3:0:0:9,10:0,0:97,100:0,0
X	127380266	.	T	C	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:0:0:0:0,0:0,0:0,0:34,34	85:1:0:0:0,0:8,8:0,0:76,77
X	127921990	.	C	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:0:0:0:0,0:29,35:0,0:0,0	81:0:0:0:10,13:71,102:0,0:0,0
X	128230051	rs75386757	T	G	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=128230051;GMAF=0.12176;dbSNPBuildID=131;SSR=0;SAO=0;VP=050000000015040116000100;WGT=1;VC=SNV;OTH;ASP;VLD;GNO;KGPhase1;KGPROD;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:1:0:0:0,0:0,0:0,0:32,33	81:2:0:0:0,0:0,0:10,10:69,71
X	129612297	.	C	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->CG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER|||||RP1-274L7.1|processed_transcript|NON_CODING|ENST00000458525|11|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:0:0:0:0,0:37,38:0,0:0,0	98:0:0:0:0,0:93,99:5,5:0,0
X	131080203	.	A	C	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	50:1:0:0:49,50:0,0:0,0:0,0	104:0:0:0:100,100:4,4:0,0:0,0
X	132431528	.	T	C	.	PASS	NT=ref;QSS=23;QSS_NT=23;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||556|GPC4|protein_coding|CODING|ENST00000370828||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	46:0:0:0:0,0:0,0:0,0:46,46	102:4:0:0:0,0:10,10:0,0:88,92
X	132462151	.	T	C	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||486|GPC4|protein_coding|CODING|ENST00000535467|2|1),INTRON(MODIFIER||||556|GPC4|protein_coding|CODING|ENST00000370828|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	41:0:0:0:0,0:0,0:0,0:41,41	104:1:0:0:1,1:8,8:1,1:93,95
X	133184130	.	A	G	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	44:0:0:0:44,44:0,0:0,1:0,0	97:1:0:0:89,90:0,1:7,10:0,0
X	133295339	rs12558928	C	G	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=133295339;dbSNPBuildID=120;SSR=0;SAO=0;VP=050000000001040102000100;WGT=1;VC=SNV;VLD;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:0:1:0:0,0:36,36:0,0:0,0	108:1:0:0:0,0:97,98:10,10:0,0
X	134030621	.	G	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||MOSPD1|processed_transcript|CODING|ENST00000462060||1),DOWNSTREAM(MODIFIER|||||MOSPD1|processed_transcript|CODING|ENST00000489890||1),DOWNSTREAM(MODIFIER|||||Z83826.1|miRNA|NON_CODING|ENST00000408372||1),INTRON(MODIFIER||||159|MOSPD1|protein_coding|CODING|ENST00000370779|4|1),INTRON(MODIFIER||||213|MOSPD1|protein_coding|CODING|ENST00000370783|4|1),INTRON(MODIFIER||||214|MOSPD1|protein_coding|CODING|ENST00000370777|3|1),INTRON(MODIFIER|||||MOSPD1|processed_transcript|CODING|ENST00000480721|2|1),INTRON(MODIFIER|||||MOSPD1|processed_transcript|CODING|ENST00000491609|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:0:0:0:0,0:0,0:30,30:0,0	79:1:0:0:8,9:0,0:70,72:0,0
X	135060202	.	C	A	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||61|RP11-274K13.2|protein_coding|CODING|ENST00000370707||1),INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER||||131|MMGT1|protein_coding|CODING|ENST00000305963||1),UPSTREAM(MODIFIER||||196|MMGT1|protein_coding|CODING|ENST00000433339||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	42:0:0:0:0,0:42,42:0,0:0,0	126:0:0:0:8,8:118,118:0,0:0,0
X	135212647	.	A	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||snoU13|snoRNA|NON_CODING|ENST00000458945||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:0:0:0:29,30:1,1:0,0:0,0	86:2:0:0:74,76:0,0:10,13:0,0
X	137695415	.	T	G	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	46:0:0:0:0,0:0,0:0,0:46,46	114:1:0:0:0,0:0,0:6,7:107,107
X	137796178	.	T	G	.	PASS	NT=ref;QSS=36;QSS_NT=36;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||192|FGF13|protein_coding|CODING|ENST00000305414|1|1),INTRON(MODIFIER||||199|FGF13|protein_coding|CODING|ENST00000541469|1|1),INTRON(MODIFIER||||205|FGF13|protein_coding|CODING|ENST00000455663|3|1),INTRON(MODIFIER||||220|FGF13|protein_coding|CODING|ENST00000436198|3|1),INTRON(MODIFIER||||226|FGF13|protein_coding|CODING|ENST00000441825|1|1),INTRON(MODIFIER||||255|FGF13|protein_coding|CODING|ENST00000370603|2|1),INTRON(MODIFIER||||97|FGF13|protein_coding|CODING|ENST00000448673|3|1),INTRON(MODIFIER|||||FGF13-AS1|processed_transcript|NON_CODING|ENST00000438238|1|1),INTRON(MODIFIER|||||FGF13-AS1|processed_transcript|NON_CODING|ENST00000446383|1|1),UPSTREAM(MODIFIER||||245|FGF13|protein_coding|CODING|ENST00000315930||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:0:0:0:0,0:0,0:0,0:34,34	214:1:0:0:0,0:0,0:49,53:164,169
X	138437538	.	G	T	.	PASS	NT=ref;QSS=23;QSS_NT=23;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	47:1:0:0:0,0:1,1:45,46:0,0	84:1:0:0:0,0:0,0:72,74:11,11
X	140766961	.	T	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:0:0:0:0,0:0,0:0,0:34,36	99:1:0:0:0,0:0,0:7,11:91,92
X	140890415	.	A	G	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=AA->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:0:0:0:31,31:0,0:0,0:0,0	125:3:0:0:104,107:0,0:18,18:0,0
X	141435884	.	A	G	.	PASS	NT=ref;QSS=23;QSS_NT=23;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	44:0:0:0:44,44:0,0:0,0:0,0	93:2:0:0:80,81:0,0:11,12:0,0
X	141472688	.	A	G	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:0:0:0:34,34:0,0:0,0:0,0	91:4:0:0:79,83:0,0:8,8:0,0
X	141719933	.	T	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:0:0:0:0,0:0,0:0,0:40,40	101:1:0:0:0,0:4,4:0,0:96,97
X	141835660	.	G	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:0:0:0:0,0:0,0:34,34:0,0	97:0:0:0:4,4:0,0:93,93:0,0
X	141889118	.	T	A	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:0:0:0:0,0:0,0:0,0:37,37	107:0:0:0:8,8:0,0:0,0:99,99
X	143887921	.	T	C	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:1:0:0:0,0:0,0:0,0:38,39	95:0:0:0:1,1:6,6:0,0:88,88
X	144299871	.	A	G	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:0:0:0:35,35:0,0:0,0:0,0	118:0:0:0:110,111:1,1:7,7:0,0
X	145054642	.	G	C	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:1:0:0:0,0:0,0:33,34:0,0	93:0:0:0:0,0:10,10:83,85:0,0
X	145233695	.	C	A	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	41:1:0:0:0,0:40,41:0,0:0,0	110:1:0:0:7,7:102,104:0,0:0,0
X	145280754	.	T	C	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	42:1:0:0:0,0:0,0:0,0:41,42	121:2:0:0:0,0:7,7:0,0:112,115
X	145733652	.	T	A	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	42:0:0:0:0,0:0,0:0,0:42,42	92:1:0:0:9,9:0,0:0,0:82,83
X	145920136	.	C	T	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:2:0:0:0,0:36,39:0,0:0,0	111:0:0:0:0,0:102,102:0,0:9,9
X	146228348	.	C	T	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=CC->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:0:0:0:0,0:38,38:0,0:0,3	111:3:0:0:3,4:92,101:0,0:13,21
X	146228357	rs200999433	C	G	.	PASS	NT=ref;QSS=25;QSS_NT=25;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=146228357;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:0:0:0:0,0:39,39:0,3:0,0	110:1:0:0:0,0:92,97:17,26:0,1
X	146241414	.	G	A	.	PASS	NT=ref;QSS=23;QSS_NT=23;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	44:0:0:0:0,0:0,0:44,44:0,0	100:0:0:0:10,10:0,0:89,90:1,1
X	146312784	.	T	A	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||MIR506|miRNA|NON_CODING|ENST00000384998||1),UPSTREAM(MODIFIER|||||MIR507|miRNA|NON_CODING|ENST00000385234||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	41:0:0:0:0,0:0,0:0,0:41,41	117:0:0:0:12,12:0,0:0,0:105,105
X	146442450	.	T	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:0:0:0:0,1:0,0:0,0:29,30	87:0:0:0:0,0:6,6:0,0:81,88
X	146888809	rs6653344	A	G	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=146888809;dbSNPBuildID=116;SSR=0;SAO=0;VP=050000000005000102000100;WGT=1;VC=SNV;ASP;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	17:0:0:0:17,19:0,0:0,0:0,0	40:1:0:0:29,30:0,0:10,10:0,0
X	146914696	.	T	C	.	PASS	NT=ref;QSS=23;QSS_NT=23;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	45:0:0:0:0,0:0,0:0,0:45,45	75:0:0:0:0,0:7,7:0,0:68,68
X	147132112	.	C	A	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||FTH1P8|processed_pseudogene|NON_CODING|ENST00000498161||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:0:0:0:0,0:37,37:0,0:0,0	104:1:0:0:9,9:94,94:0,0:0,0
X	147132365	.	C	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||FTH1P8|processed_pseudogene|NON_CODING|ENST00000498161||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:0:0:0:0,0:32,32:0,0:0,0	107:0:0:0:0,0:94,94:0,0:13,13
X	147138437	.	A	G	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||FTH1P8|processed_pseudogene|NON_CODING|ENST00000498161||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:1:0:0:34,35:0,0:0,0:0,0	100:1:0:0:92,93:0,0:7,7:0,0
X	148156847	.	T	C	.	PASS	NT=ref;QSS=25;QSS_NT=25;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	50:0:0:0:0,0:0,0:0,0:50,50	97:1:0:0:0,0:6,6:0,0:90,91
X	148254972	.	T	A	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:1:0:0:0,0:0,0:0,0:34,35	95:0:0:0:7,7:0,0:0,0:88,88
X	148390042	.	A	T	.	PASS	NT=ref;QSS=26;QSS_NT=26;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||AC231656.1|miRNA|NON_CODING|ENST00000410358||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	52:0:0:0:52,54:0,0:0,0:0,0	98:0:0:0:89,89:0,0:0,0:9,9
X	148400313	.	A	G	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:0:0:0:39,39:0,0:0,0:0,0	108:0:0:0:102,103:0,0:6,7:0,0
X	148400324	.	A	G	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:0:0:0:37,37:0,0:0,0:0,0	105:0:0:0:100,101:0,0:5,5:0,0
X	148732104	.	G	A	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||RP5-937E21.1|processed_pseudogene|NON_CODING|ENST00000456494||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:0:0:0:0,0:0,0:37,37:0,0	88:2:0:0:8,9:0,0:78,79:0,0
X	150870712	.	G	C	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||102|PRRG3|protein_coding|CODING|ENST00000370354||1),DOWNSTREAM(MODIFIER||||231|PRRG3|protein_coding|CODING|ENST00000538575||1),DOWNSTREAM(MODIFIER||||51|PRRG3|protein_coding|CODING|ENST00000448726||1),INTRON(MODIFIER||||91|PRRG3|protein_coding|CODING|ENST00000448324|1|1),UTR_3_PRIME(MODIFIER||||231|PRRG3|protein_coding|CODING|ENST00000370353|4|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	48:2:0:0:0,0:0,0:46,48:0,0	90:0:0:0:0,0:4,4:86,87:0,0
X	151208755	.	G	A	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	41:0:0:0:0,0:0,0:41,41:0,0	99:2:0:0:9,10:0,1:88,89:0,0
X	151575392	.	T	C	.	PASS	NT=ref;QSS=23;QSS_NT=23;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||492|GABRA3|protein_coding|CODING|ENST00000370311|1|1),INTRON(MODIFIER||||492|GABRA3|protein_coding|CODING|ENST00000370314|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	46:1:0:0:0,0:0,0:0,0:45,46	105:1:0:0:0,0:7,7:1,1:96,97
X	153245779	.	C	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||261|TMEM187|protein_coding|CODING|ENST00000369982|1|1),INTRON(MODIFIER||||65|TMEM187|protein_coding|CODING|ENST00000425274|1|1),UPSTREAM(MODIFIER||||32|TMEM187|protein_coding|CODING|ENST00000431598||1),UPSTREAM(MODIFIER|||||MIR3202-2|miRNA|NON_CODING|ENST00000580198||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:0:0:0:0,0:39,40:0,0:0,0	73:0:0:0:0,0:69,70:0,1:4,4
MT	1301	.	G	A	.	PASS	NT=ref;QSS=1978;QSS_NT=1978;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||J01415.10|Mt_tRNA|NON_CODING|ENST00000387400||1),DOWNSTREAM(MODIFIER|||||J01415.11|Mt_tRNA|NON_CODING|ENST00000387405||1),DOWNSTREAM(MODIFIER|||||J01415.12|Mt_tRNA|NON_CODING|ENST00000387409||1),DOWNSTREAM(MODIFIER|||||J01415.2|Mt_tRNA|NON_CODING|ENST00000387314||1),DOWNSTREAM(MODIFIER|||||J01415.6|Mt_tRNA|NON_CODING|ENST00000387372||1),DOWNSTREAM(MODIFIER|||||J01415.9|Mt_tRNA|NON_CODING|ENST00000387392||1),EXON(MODIFIER|||||J01415.24|Mt_rRNA|NON_CODING|ENST00000389680|1|1),UPSTREAM(MODIFIER||||317|MT-ND1|protein_coding|CODING|ENST00000361390||1),UPSTREAM(MODIFIER||||346|MT-ND2|protein_coding|CODING|ENST00000361453||1),UPSTREAM(MODIFIER||||513|MT-CO1|protein_coding|CODING|ENST00000361624||1),UPSTREAM(MODIFIER|||||J01415.1|Mt_tRNA|NON_CODING|ENST00000386347||1),UPSTREAM(MODIFIER|||||J01415.3|Mt_tRNA|NON_CODING|ENST00000387342||1),UPSTREAM(MODIFIER|||||J01415.4|Mt_rRNA|NON_CODING|ENST00000387347||1),UPSTREAM(MODIFIER|||||J01415.5|Mt_tRNA|NON_CODING|ENST00000387365||1),UPSTREAM(MODIFIER|||||J01415.7|Mt_tRNA|NON_CODING|ENST00000387377||1),UPSTREAM(MODIFIER|||||J01415.8|Mt_tRNA|NON_CODING|ENST00000387382||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	4454:28:0:0:3,3:2,4:4420,4457:1,1	10000:49:0:0:542,546:8,10:9392,9437:9,13
GL000226.1	936	.	A	G	.	PASS	NT=ref;QSS=74;QSS_NT=74;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	1689:111:0:0:1536,1721:3,5:38,42:1,5	4003:275:0:0:3599,4020:1,11:127,141:1,7
GL000229.1	4737	.	C	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	88:7:0:0:0,1:80,90:0,0:1,1	217:16:5:0:0,0:189,220:0,1:12,16
GL000229.1	8812	.	G	C	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	235:7:17:0:0,0:5,8:222,317:1,3	456:16:55:0:0,0:16,38:420,661:4,5
GL000229.1	13733	.	T	C	.	PASS	NT=ref;QSS=24;QSS_NT=24;SGT=TT->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||CT978678.1|miRNA|NON_CODING|ENST00000459109||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	122:0:0:0:0,0:1,3:0,0:121,130	312:3:0:0:0,0:13,15:0,0:296,312
GL000231.1	9274	.	C	A	.	PASS	NT=ref;QSS=28;QSS_NT=28;SGT=CC->AC;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	160:14:0:0:1,5:145,178:0,0:0,0	428:35:0:0:16,21:377,453:0,0:0,0
GL000231.1	10806	.	G	A	.	PASS	NT=ref;QSS=42;QSS_NT=42;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	161:2:0:0:1,2:0,0:158,182:0,0	430:10:0:0:18,29:0,1:402,472:0,0
GL000231.1	11082	.	T	C	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	127:0:0:0:0,0:1,4:0,1:126,133	363:7:0:0:0,0:11,33:0,0:345,377
GL000231.1	25228	.	G	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->GT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=UPSTREAM(MODIFIER|||||CT867977.1|miRNA|NON_CODING|ENST00000581649||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	167:5:0:0:0,0:0,0:160,217:2,3	470:7:0:0:0,0:0,1:446,554:17,24
GL000235.1	3656	.	T	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->GT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	83:2:0:0:0,0:0,0:1,3:80,90	184:2:0:0:0,0:0,1:13,22:169,199
GL000247.1	23608	.	C	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	21:6:0:0:0,0:15,25:0,0:0,0	66:10:0:0:11,14:45,65:0,0:0,0
GL000234.1	6041	.	T	C	.	PASS	NT=ref;QSS=62;QSS_NT=62;SGT=TT->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	271:10:28:0:0,0:2,4:0,0:259,291	749:18:87:0:0,0:22,26:0,1:709,755
GL000234.1	10700	.	C	A	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	250:3:0:0:4,5:243,266:0,0:0,0	550:8:0:0:15,24:526,578:0,0:1,2
GL000232.1	13988	.	C	T	.	PASS	NT=ref;QSS=23;QSS_NT=23;SGT=CC->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	188:2:0:0:0,0:184,221:0,0:2,5	503:6:0:0:0,1:483,551:0,0:14,20
GL000232.1	14069	.	C	T	.	PASS	NT=ref;QSS=27;QSS_NT=27;SGT=CC->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	150:5:0:0:0,0:143,166:0,0:2,3	417:10:0:0:1,1:384,425:0,0:22,34
GL000232.1	14341	.	G	C	.	PASS	NT=ref;QSS=31;QSS_NT=31;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	165:1:0:0:0,0:2,2:162,178:0,0	354:2:0:0:0,0:18,29:333,351:1,1
GL000232.1	29520	.	G	A	.	PASS	NT=ref;QSS=50;QSS_NT=50;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	254:44:0:0:2,3:0,0:208,254:0,1	618:110:0:0:15,20:1,1:492,617:0,1
GL000232.1	31827	.	T	C	.	PASS	NT=ref;QSS=55;QSS_NT=55;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	251:63:0:0:0,0:1,4:0,0:187,253	634:178:0:0:0,1:15,21:2,3:439,617
GL000232.1	35903	.	G	A	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	111:0:0:0:1,1:0,0:110,112:0,0	313:6:0:0:10,13:0,1:297,313:0,0
GL000232.1	38261	.	G	A	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=GG->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	173:2:0:0:2,5:0,0:169,180:0,0	564:13:0:0:17,42:1,1:533,595:0,0
GL000240.1	31459	.	G	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:1:0:0:0,0:0,0:28,31:0,0	97:2:0:0:6,8:0,0:89,101:0,0
GL000240.1	38198	.	G	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:1:0:0:0,1:0,0:29,38:0,0	80:0:0:0:13,14:0,0:67,75:0,0
GL000241.1	532	.	C	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	254:4:0:0:0,0:247,275:3,4:0,1	664:4:0:0:0,0:644,737:16,19:0,0
GL000241.1	10897	.	C	A	.	PASS	NT=ref;QSS=33;QSS_NT=33;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||CU459211.1|miRNA|NON_CODING|ENST00000410738||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	240:1:0:0:3,4:236,258:0,0:0,0	627:7:0:0:22,25:598,686:0,0:0,0
GL000241.1	14515	.	A	C	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=UPSTREAM(MODIFIER|||||CU459211.1|miRNA|NON_CODING|ENST00000410738||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	175:0:0:0:173,191:2,2:0,0:0,0	384:2:0:0:369,416:12,13:0,0:1,1
GL000241.1	21165	.	C	T	.	PASS	NT=ref;QSS=29;QSS_NT=29;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	240:3:0:0:0,0:235,269:0,0:2,3	792:11:0:0:1,2:761,868:0,0:19,22
GL000241.1	26446	.	G	T	.	PASS	NT=ref;QSS=26;QSS_NT=26;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	186:0:0:0:0,0:0,0:184,215:2,4	365:5:0:0:0,0:1,2:349,407:10,18
GL000241.1	33013	.	A	G	.	PASS	NT=ref;QSS=40;QSS_NT=40;SGT=AA->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	124:2:0:0:122,132:0,0:0,0:0,0	348:7:0:0:330,361:0,1:11,14:0,0
GL000241.1	40299	.	G	C	.	PASS	NT=ref;QSS=27;QSS_NT=27;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	320:2:0:0:0,0:5,5:313,337:0,0	899:12:0:0:0,0:24,29:863,940:0,0
GL000241.1	40376	.	A	G	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	338:2:0:0:330,356:0,0:5,5:1,1	842:5:0:0:813,903:1,1:23,25:0,0
GL000241.1	40827	.	C	A	.	PASS	NT=ref;QSS=24;QSS_NT=24;SGT=CC->AC;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	266:4:0:0:3,4:259,282:0,0:0,0	676:8:0:0:15,20:653,716:0,0:0,0
GL000241.1	41724	.	T	C	.	PASS	NT=ref;QSS=26;QSS_NT=26;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	182:9:0:0:0,0:2,3:1,2:170,215	521:23:0:0:1,1:15,21:2,4:480,610
GL000243.1	9050	.	A	C	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||CU459202.1|miRNA|NON_CODING|ENST00000482332||1),DOWNSTREAM(MODIFIER|||||CU459202.2|miRNA|NON_CODING|ENST00000476361||1),DOWNSTREAM(MODIFIER|||||CU459202.3|miRNA|NON_CODING|ENST00000582285||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	59:0:0:0:59,62:0,0:0,0:0,0	110:3:0:0:102,119:5,8:0,0:0,0
GL000230.1	1563	.	T	C	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=TT->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	59:0:0:0:0,0:0,2:0,0:59,59	171:2:0:0:0,0:7,7:0,0:162,164
GL000237.1	17117	.	G	A	.	PASS	NT=ref;QSS=31;QSS_NT=31;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	258:3:0:0:4,4:0,0:250,279:1,1	538:9:0:0:24,30:0,1:505,590:0,0
GL000198.1	87616	.	A	G	.	PASS	NT=ref;QSS=23;QSS_NT=23;SGT=AA->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	248:6:0:0:240,267:0,0:2,6:0,0	693:19:0:0:655,722:0,0:19,25:0,0
GL000198.1	89055	.	C	G	.	PASS	NT=ref;QSS=51;QSS_NT=51;SGT=CC->CG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	129:4:0:0:0,0:125,160:0,6:0,1	282:14:0:0:0,0:257,353:10,19:1,1
GL000208.1	14178	.	A	G	.	PASS	NT=ref;QSS=27;QSS_NT=27;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	70:16:0:0:54,105:0,0:0,0:0,4	160:36:0:0:119,258:0,0:5,19:0,3
GL000208.1	29083	.	G	A	.	PASS	NT=ref;QSS=31;QSS_NT=31;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	89:13:0:0:0,7:1,3:75,174:0,0	301:51:0:0:14,34:2,13:234,526:0,2
GL000228.1	16408	.	C	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->CG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||5S_rRNA|rRNA|NON_CODING|ENST00000459052||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	23:1:0:0:0,0:22,30:0,1:0,0	69:0:0:0:0,0:50,67:19,25:0,0
GL000228.1	115920	.	C	G	.	PASS	NT=ref;QSS=23;QSS_NT=23;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||CT476828.3|pseudogene|NON_CODING|ENST00000400869||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	105:9:0:0:0,0:95,200:1,3:0,0	223:37:0:0:0,0:170,379:16,24:0,1
GL000214.1	31951	.	G	T	.	PASS	NT=ref;QSS=37;QSS_NT=37;SGT=GG->GT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	182:0:0:0:0,0:0,0:180,183:2,4	489:5:0:0:1,3:0,0:468,482:15,18
GL000214.1	36584	.	T	G	.	PASS	NT=ref;QSS=35;QSS_NT=35;SGT=TT->GT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	100:16:0:0:0,0:0,0:0,0:84,126	224:35:0:0:0,0:0,0:8,9:181,271
GL000214.1	43611	.	G	A	.	PASS	NT=ref;QSS=48;QSS_NT=48;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	103:2:0:0:0,0:0,0:101,104:0,0	306:1:0:0:11,12:0,0:294,296:0,0
GL000214.1	55946	.	C	T	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	159:2:0:0:0,0:156,159:0,0:1,1	311:1:0:0:0,0:299,306:1,1:10,11
GL000214.1	56271	.	C	G	.	PASS	NT=ref;QSS=25;QSS_NT=25;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	153:0:0:0:1,1:152,155:0,1:0,0	378:1:0:0:3,3:361,370:13,15:0,0
GL000214.1	56354	.	T	C	.	PASS	NT=ref;QSS=25;QSS_NT=25;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	143:1:0:0:0,0:0,1:0,0:142,144	435:4:0:0:0,0:13,17:0,0:418,423
GL000214.1	56367	.	A	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	144:2:0:0:142,145:0,0:0,0:0,1	442:3:0:0:424,429:0,0:1,1:14,17
GL000214.1	66896	.	C	T	.	PASS	NT=ref;QSS=30;QSS_NT=30;SGT=CC->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	157:4:0:0:0,0:151,156:0,0:2,3	410:6:0:0:0,0:390,401:0,0:14,15
GL000214.1	85053	.	T	C	.	PASS	NT=ref;QSS=25;QSS_NT=25;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	95:1:0:0:0,0:1,1:0,2:93,97	267:2:0:0:0,0:14,23:0,0:251,262
GL000214.1	118264	.	G	C	.	PASS	NT=ref;QSS=27;QSS_NT=27;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	289:8:0:0:0,1:5,9:276,415:0,0	587:36:0:0:0,0:20,31:531,833:0,2
GL000214.1	126832	.	C	T	.	PASS	NT=ref;QSS=40;QSS_NT=40;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	192:2:0:0:0,0:185,294:2,2:3,7	509:3:0:0:1,1:483,735:0,0:22,31
GL000214.1	128515	.	C	T	.	PASS	NT=ref;QSS=32;QSS_NT=32;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	149:4:0:0:0,0:142,229:1,1:2,6	291:5:0:0:0,0:271,435:0,0:15,19
GL000214.1	128518	.	A	C	.	PASS	NT=ref;QSS=31;QSS_NT=31;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	146:4:0:0:140,226:2,6:0,0:0,0	274:6:0:0:253,417:15,19:0,0:0,1
GL000221.1	53353	.	T	G	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=TT->GT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	66:1:0:0:0,0:0,0:0,0:65,76	149:4:0:0:0,1:0,0:6,7:139,158
GL000221.1	67084	.	G	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->GT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:0:0:0:0,0:0,0:36,43:0,1	97:2:0:0:0,0:0,0:88,108:7,7
GL000221.1	105494	.	T	G	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=TT->GT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	73:2:0:0:0,0:0,0:0,1:71,89	146:7:0:0:0,0:0,0:11,11:128,168
GL000221.1	105755	.	C	A	.	PASS	NT=ref;QSS=24;QSS_NT=24;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	59:1:0:0:0,0:58,65:0,0:0,0	136:1:0:0:8,10:127,146:0,0:0,1
GL000221.1	105799	.	A	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=AA->AT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:0:0:0:38,42:1,1:0,0:0,1	84:1:0:0:76,88:0,0:0,0:7,9
GL000221.1	106315	.	C	T	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:0:0:0:0,0:39,53:0,0:0,0	87:2:0:0:0,0:78,103:0,0:7,9
GL000221.1	106386	.	G	A	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=GG->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	56:0:0:0:0,3:0,0:56,67:0,0	136:1:0:0:11,13:0,0:124,156:0,0
GL000218.1	3736	.	C	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->CG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	169:2:0:0:0,1:165,170:2,3:0,0	365:4:0:0:5,6:340,350:15,21:1,1
GL000218.1	10626	.	A	G	.	PASS	NT=ref;QSS=38;QSS_NT=38;SGT=AA->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	113:0:0:0:112,117:1,1:0,2:0,0	332:3:0:0:315,320:0,0:14,14:0,2
GL000218.1	20949	.	A	C	.	PASS	NT=ref;QSS=30;QSS_NT=30;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	138:0:0:0:135,141:2,2:1,1:0,0	335:3:0:0:317,333:14,20:0,0:1,1
GL000218.1	26022	.	C	T	.	PASS	NT=ref;QSS=36;QSS_NT=36;SGT=CC->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	134:1:0:0:0,0:133,135:0,0:0,0	384:1:0:0:1,1:374,377:0,0:8,8
GL000218.1	28056	.	C	T	.	PASS	NT=ref;QSS=52;QSS_NT=52;SGT=CC->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	132:2:0:0:0,0:130,132:0,0:0,0	296:1:0:0:2,2:284,286:0,0:9,9
GL000218.1	43699	.	C	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||222|AL354822.1|protein_coding|CODING|ENST00000400681|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	95:7:0:0:0,0:87,99:0,0:1,1	210:12:0:0:0,0:188,206:0,0:10,14
GL000218.1	52811	.	T	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||222|AL354822.1|protein_coding|CODING|ENST00000400681|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	101:4:0:0:0,0:0,3:0,1:97,102	250:7:0:0:0,0:8,12:3,5:232,237
GL000218.1	71445	.	A	C	.	PASS	NT=ref;QSS=26;QSS_NT=26;SGT=AA->AC;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER||||222|AL354822.1|protein_coding|CODING|ENST00000400681|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	184:2:0:0:179,199:3,6:0,0:0,0	358:5:0:0:338,398:15,21:0,0:0,0
GL000218.1	71475	.	C	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER||||222|AL354822.1|protein_coding|CODING|ENST00000400681|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	157:1:0:0:1,1:153,172:0,0:2,5	355:3:0:0:0,0:335,393:1,1:16,22
GL000218.1	77656	.	A	G	.	PASS	NT=ref;QSS=24;QSS_NT=24;SGT=AA->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER||||222|AL354822.1|protein_coding|CODING|ENST00000400681|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	93:0:0:0:93,95:0,0:0,3:0,0	260:3:0:0:245,257:0,0:12,22:0,1
GL000218.1	106994	.	G	T	.	PASS	NT=ref;QSS=45;QSS_NT=45;SGT=GG->GT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	103:0:0:0:0,0:0,0:103,111:0,1	292:2:0:0:1,1:0,0:268,291:21,24
GL000218.1	107041	.	T	A	.	PASS	NT=ref;QSS=46;QSS_NT=46;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	98:1:0:0:0,0:0,0:1,1:96,103	252:3:0:0:15,18:0,0:0,0:234,253
GL000218.1	107045	.	C	G	.	PASS	NT=ref;QSS=29;QSS_NT=29;SGT=CC->CG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	96:1:0:0:0,0:94,99:1,3:0,0	251:2:0:0:0,0:229,246:20,26:0,0
GL000218.1	107089	.	G	C	.	PASS	NT=ref;QSS=41;QSS_NT=41;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	97:2:0:0:0,0:0,0:95,102:0,1	243:5:0:0:0,0:12,15:226,246:0,0
GL000218.1	126148	.	T	C	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	81:0:0:0:0,0:0,2:0,0:81,83	280:5:0:0:0,0:8,11:0,0:267,274
GL000218.1	131771	.	G	T	.	PASS	NT=ref;QSS=31;QSS_NT=31;SGT=GG->GT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	151:1:0:0:1,1:0,0:148,150:1,2	331:4:0:0:0,0:0,0:309,322:18,29
GL000218.1	131777	.	A	G	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=AA->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	150:1:0:0:146,148:0,0:2,4:1,1	330:5:0:0:307,321:0,0:18,30:0,1
GL000218.1	131807	.	C	T	.	PASS	NT=ref;QSS=30;QSS_NT=30;SGT=CC->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	156:1:0:0:0,0:154,155:0,0:1,3	351:7:0:0:1,1:321,339:0,0:22,36
GL000218.1	151563	.	A	G	.	PASS	NT=ref;QSS=30;QSS_NT=30;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	135:1:0:0:133,145:0,0:1,2:0,0	381:3:0:0:364,375:0,1:14,18:0,0
GL000211.1	147276	.	C	T	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:0:0:0:0,0:40,40:0,0:0,0	112:0:0:0:0,0:106,106:0,0:6,11
GL000211.1	147360	.	A	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	50:0:0:0:50,50:0,2:0,0:0,0	108:0:0:0:101,101:7,12:0,0:0,0
GL000211.1	147380	.	C	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	46:0:0:0:0,0:46,46:0,0:0,2	107:0:0:0:1,1:99,99:0,0:7,10
GL000211.1	147383	.	A	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=AA->AC;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	46:0:0:0:46,46:0,2:0,0:0,0	107:0:0:0:100,100:7,10:0,0:0,0
GL000211.1	151176	.	C	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:0:0:0:0,0:38,38:0,0:0,0	130:2:0:0:0,1:121,122:0,0:7,11
GL000211.1	151228	.	A	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	28:0:0:0:28,28:0,0:0,0:0,0	106:1:0:0:97,98:0,0:8,10:0,0
GL000211.1	157286	.	T	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:2:0:0:0,0:0,0:1,1:37,40	118:0:0:0:0,0:0,0:5,7:113,113
GL000211.1	161099	.	C	T	.	PASS	NT=ref;QSS=23;QSS_NT=23;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	42:0:0:0:0,0:42,45:0,0:0,3	151:1:0:0:0,0:129,135:0,0:21,31
GL000211.1	163446	.	G	C	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	41:0:0:0:0,0:0,0:41,41:0,0	115:0:0:0:0,0:15,15:100,100:0,0
GL000211.1	163469	.	C	T	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:1:0:0:0,0:39,40:0,0:0,0	109:2:0:0:0,0:95,97:0,0:12,12
GL000199.1	12671	.	T	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	63:12:0:0:0,0:1,1:0,0:50,90	182:44:0:0:5,13:1,1:0,0:132,240
GL000199.1	14432	.	A	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	45:6:0:0:39,47:0,1:0,0:0,1	107:10:0:0:90,105:7,13:0,0:0,1
GL000199.1	15396	.	C	T	.	PASS	NT=ref;QSS=55;QSS_NT=55;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	130:15:0:0:0,0:115,284:0,0:0,2	342:42:0:0:0,1:285,678:0,1:15,31
GL000199.1	85345	.	C	T	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=CC->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	49:3:0:0:0,0:46,84:0,0:0,6	98:24:0:0:0,3:68,222:1,2:5,18
GL000199.1	101196	.	A	G	.	PASS	NT=ref;QSS=37;QSS_NT=37;SGT=AA->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	285:11:0:0:270,413:1,1:3,6:0,0	450:18:0:0:416,692:1,1:15,27:0,0
GL000199.1	133606	.	A	G	.	PASS	NT=ref;QSS=23;QSS_NT=23;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	50:3:0:0:47,106:0,2:0,8:0,0	67:4:0:0:54,147:5,22:4,9:0,0
GL000217.1	22232	.	C	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	11:0:0:0:0,1:11,15:0,0:0,0	62:2:1:0:16,22:44,58:0,0:0,0
GL000217.1	28389	.	T	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:0:0:0:0,0:0,0:0,0:32,41	116:2:0:0:0,0:9,12:0,0:105,127
GL000217.1	28413	.	C	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:0:0:0:0,0:31,39:0,0:0,0	115:2:0:0:0,0:104,125:9,13:0,0
GL000217.1	28501	.	T	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	16:0:0:0:0,0:0,0:0,0:16,17	55:0:0:0:0,0:10,14:0,0:45,49
GL000217.1	41051	.	C	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	18:4:0:0:0,0:14,25:0,0:0,0	69:23:0:0:0,0:37,69:0,0:9,14
GL000217.1	86660	.	G	T	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	44:1:0:0:0,0:0,0:43,48:0,0	103:3:0:0:0,1:0,0:88,100:12,12
GL000217.1	113786	.	G	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:0:0:0:0,1:0,0:33,43:0,0	108:0:0:0:10,15:0,0:98,110:0,1
GL000217.1	159618	.	G	A	.	PASS	NT=ref;QSS=25;QSS_NT=25;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	68:2:0:0:1,1:0,1:65,87:0,0	164:1:0:0:13,18:0,0:150,186:0,0
GL000217.1	159619	.	G	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	67:2:0:0:1,1:0,0:64,87:0,0	164:1:0:0:13,18:0,0:150,186:0,0
GL000216.1	2457	.	A	C	.	PASS	NT=ref;QSS=24;QSS_NT=24;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	76:26:0:0:50,224:0,9:0,0:0,5	247:68:0:0:170,557:8,32:0,2:1,19
GL000216.1	2489	.	T	A	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	56:17:0:0:0,2:0,6:0,1:39,144	165:52:0:0:6,13:1,22:0,3:106,361
GL000216.1	7370	.	A	T	.	PASS	NT=ref;QSS=42;QSS_NT=42;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	243:31:1:0:208,984:1,23:0,3:3,43	635:68:0:0:538,2467:10,56:0,20:19,139
GL000216.1	10475	.	T	G	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=TT->GT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	168:65:0:0:1,8:0,2:1,17:101,717	458:182:1:0:0,28:0,9:15,73:261,1757
GL000216.1	15089	.	C	A	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	124:32:3:0:1,6:90,248:0,0:1,17	342:102:7:0:7,37:225,684:0,1:8,47
GL000216.1	22560	.	C	T	.	PASS	NT=ref;QSS=37;QSS_NT=37;SGT=CC->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	218:22:0:0:0,3:195,711:0,3:1,55	496:52:0:0:1,10:420,1818:0,6:23,178
GL000216.1	69013	.	T	C	.	PASS	NT=ref;QSS=24;QSS_NT=24;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	68:2:67:0:0,2:1,3:0,1:65,128	166:8:145:0:0,7:8,13:2,3:148,326
GL000216.1	70182	.	C	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->AC;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	98:13:0:0:1,7:84,216:0,2:0,0	231:37:0:0:8,24:186,481:0,1:0,1
GL000216.1	73888	.	C	T	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=CC->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	83:4:2:0:0,0:78,119:0,0:1,3	229:16:8:0:0,0:204,302:0,0:9,12
GL000216.1	77968	.	T	A	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=TT->AT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	172:9:0:0:1,15:0,1:0,0:162,380	448:29:0:0:19,61:0,7:0,0:400,906
GL000216.1	96373	.	G	A	.	PASS	NT=ref;QSS=44;QSS_NT=44;SGT=GG->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	162:3:0:0:1,5:0,0:158,191:0,0	353:10:0:0:12,14:0,0:331,420:0,0
GL000216.1	102547	.	A	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	79:0:65:0:78,95:0,0:0,0:1,1	250:4:182:0:237,280:0,2:0,0:9,11
GL000216.1	116319	.	T	A	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	42:1:0:0:0,1:0,0:1,2:40,61	92:1:0:0:7,16:0,3:2,4:82,144
GL000216.1	124903	.	C	T	.	PASS	NT=ref;QSS=36;QSS_NT=36;SGT=CC->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	152:3:0:0:0,0:148,175:0,0:1,4	379:5:0:0:0,0:360,434:0,0:14,16
GL000216.1	135356	.	G	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	28:1:0:0:0,0:0,1:27,43:0,0	67:11:0:0:0,0:5,9:51,82:0,1
GL000216.1	145911	.	T	G	.	PASS	NT=ref;QSS=24;QSS_NT=24;SGT=TT->GT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	89:31:1:0:0,0:1,2:0,9:57,180	228:89:1:0:0,6:0,4:13,28:126,506
GL000216.1	145932	.	A	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AC;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	118:25:0:0:93,235:0,8:0,1:0,2	283:76:0:0:191,641:15,30:1,6:0,2
GL000216.1	147016	.	T	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	50:18:0:0:0,4:0,2:0,0:32,115	148:50:0:0:9,40:0,1:1,3:88,308
GL000216.1	149816	.	A	G	.	PASS	NT=ref;QSS=42;QSS_NT=42;SGT=AA->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	135:11:0:0:122,217:1,2:0,5:1,2	271:15:0:0:241,443:2,4:13,32:0,4
GL000216.1	149831	.	C	A	.	PASS	NT=ref;QSS=40;QSS_NT=40;SGT=CC->AC;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	124:6:0:0:0,5:117,202:1,3:0,0	258:9:0:0:12,30:234,418:3,6:0,2
GL000216.1	160234	.	C	A	.	PASS	NT=ref;QSS=23;QSS_NT=23;SGT=CC->AC;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	92:9:0:0:0,10:83,162:0,0:0,0	221:42:0:0:6,28:172,374:0,1:1,2
GL000216.1	166812	.	C	A	.	PASS	NT=ref;QSS=24;QSS_NT=24;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	126:19:0:0:2,6:103,239:2,4:0,8	231:19:0:0:13,23:193,453:6,10:0,4
GL000205.1	21979	.	G	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->CG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	88:0:0:0:0,0:0,3:88,88:0,0	261:2:0:0:0,1:10,15:249,250:0,0
GL000205.1	63624	.	G	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	46:0:0:0:0,0:0,0:45,47:1,1	76:3:0:0:0,0:0,0:67,73:6,7
GL000219.1	62501	.	G	C	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=GG->CG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER||||123|AL592183.1|protein_coding|CODING|ENST00000346061|6|1),INTRON(MODIFIER||||134|AL592183.1|protein_coding|CODING|ENST00000418749|6|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	168:8:0:0:0,0:1,2:159,201:0,0	427:18:0:0:0,1:11,22:398,548:0,0
GL000219.1	81309	.	T	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER||||123|AL592183.1|protein_coding|CODING|ENST00000346061|4|1),INTRON(MODIFIER||||134|AL592183.1|protein_coding|CODING|ENST00000418749|4|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	81:0:0:0:0,0:0,2:0,0:81,81	203:0:0:0:0,0:8,13:0,0:195,195
GL000219.1	83386	.	C	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||123|AL592183.1|protein_coding|CODING|ENST00000346061|3|1),INTRON(MODIFIER||||134|AL592183.1|protein_coding|CODING|ENST00000418749|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	82:0:0:0:0,0:81,82:0,0:1,1	236:5:0:0:0,0:206,220:0,0:25,32
GL000219.1	83418	.	C	T	.	PASS	NT=ref;QSS=39;QSS_NT=39;SGT=CC->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER||||123|AL592183.1|protein_coding|CODING|ENST00000346061|3|1),INTRON(MODIFIER||||134|AL592183.1|protein_coding|CODING|ENST00000418749|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	86:0:0:0:0,0:86,88:0,0:0,1	249:0:0:0:0,0:236,255:0,0:13,17
GL000219.1	83419	.	A	G	.	PASS	NT=ref;QSS=39;QSS_NT=39;SGT=AA->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER||||123|AL592183.1|protein_coding|CODING|ENST00000346061|3|1),INTRON(MODIFIER||||134|AL592183.1|protein_coding|CODING|ENST00000418749|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	86:0:0:0:86,88:0,0:0,1:0,0	245:0:0:0:232,251:0,0:13,17:0,0
GL000219.1	83474	.	A	G	.	PASS	NT=ref;QSS=37;QSS_NT=37;SGT=AA->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER||||123|AL592183.1|protein_coding|CODING|ENST00000346061|3|1),INTRON(MODIFIER||||134|AL592183.1|protein_coding|CODING|ENST00000418749|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	80:0:0:0:80,83:0,0:0,1:0,0	257:0:0:0:241,259:2,2:14,18:0,0
GL000219.1	86098	.	C	A	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||123|AL592183.1|protein_coding|CODING|ENST00000346061|3|1),INTRON(MODIFIER||||134|AL592183.1|protein_coding|CODING|ENST00000418749|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	83:1:0:0:1,2:80,98:1,1:0,0	233:8:1:0:16,21:207,269:2,2:0,0
GL000219.1	88107	.	A	C	.	PASS	NT=ref;QSS=44;QSS_NT=44;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||123|AL592183.1|protein_coding|CODING|ENST00000346061|3|1),INTRON(MODIFIER||||134|AL592183.1|protein_coding|CODING|ENST00000418749|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	169:1:0:0:167,196:1,1:0,0:0,0	474:10:0:0:444,546:19,25:1,1:0,0
GL000219.1	95311	.	A	T	.	PASS	NT=ref;QSS=34;QSS_NT=34;SGT=AA->AT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER||||123|AL592183.1|protein_coding|CODING|ENST00000346061|2|1),INTRON(MODIFIER||||134|AL592183.1|protein_coding|CODING|ENST00000418749|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	114:1:0:0:113,132:0,0:0,0:0,0	294:3:0:0:279,308:0,0:2,2:10,13
GL000219.1	95722	.	C	G	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||123|AL592183.1|protein_coding|CODING|ENST00000346061|2|1),INTRON(MODIFIER||||134|AL592183.1|protein_coding|CODING|ENST00000418749|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	81:2:0:0:0,0:78,89:1,1:0,0	228:4:0:0:0,0:213,231:11,12:0,0
GL000219.1	104484	.	G	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER||||123|AL592183.1|protein_coding|CODING|ENST00000346061||1),UPSTREAM(MODIFIER||||134|AL592183.1|protein_coding|CODING|ENST00000418749||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	91:3:0:0:1,2:0,0:87,107:0,0	239:7:0:0:11,15:0,0:220,266:1,2
GL000219.1	104500	.	A	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER||||123|AL592183.1|protein_coding|CODING|ENST00000346061||1),UPSTREAM(MODIFIER||||134|AL592183.1|protein_coding|CODING|ENST00000418749||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	91:4:0:0:86,103:0,0:0,1:1,1	228:9:0:0:209,260:0,0:0,0:10,13
GL000219.1	105085	.	T	C	.	PASS	NT=ref;QSS=32;QSS_NT=32;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	140:2:0:0:0,0:1,1:0,0:137,164	344:7:0:0:1,1:11,17:0,0:325,402
GL000219.1	128880	.	G	A	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	99:1:0:0:1,2:0,0:97,123:0,0	280:5:0:0:10,14:0,0:265,323:0,0
GL000219.1	128898	.	T	C	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	99:1:0:0:0,0:1,2:0,0:97,123	274:6:0:0:0,0:10,14:0,0:258,317
GL000219.1	131744	.	G	T	.	PASS	NT=ref;QSS=25;QSS_NT=25;SGT=GG->GT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	83:9:0:0:0,0:0,0:74,93:0,4	253:27:0:0:0,0:0,0:206,267:20,27
GL000219.1	132005	.	A	G	.	PASS	NT=ref;QSS=30;QSS_NT=30;SGT=AA->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	90:0:0:0:90,102:0,0:0,3:0,0	285:4:0:0:265,315:1,1:14,24:1,1
GL000219.1	132037	.	C	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	98:1:0:0:0,0:96,123:0,0:1,3	308:18:0:0:0,2:278,374:0,0:12,22
GL000219.1	140208	.	A	G	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	113:0:0:0:112,135:0,0:1,3:0,0	252:4:0:0:239,281:1,1:8,10:0,0
GL000219.1	142069	.	C	T	.	PASS	NT=ref;QSS=57;QSS_NT=57;SGT=CC->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	168:0:0:0:0,0:168,210:0,0:0,4	427:3:0:0:1,1:409,506:0,0:14,18
GL000219.1	143864	.	A	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	93:4:0:0:82,84:4,6:3,4:0,1	216:18:0:0:174,182:10,16:14,18:0,1
GL000219.1	145354	.	C	T	.	PASS	NT=ref;QSS=30;QSS_NT=30;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	73:2:0:0:0,0:71,73:0,0:0,0	201:5:0:0:0,0:188,192:0,1:8,10
GL000219.1	145371	.	A	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	75:1:0:0:73,74:1,1:0,0:0,0	207:4:0:0:195,199:8,11:0,0:0,0
GL000219.1	150540	.	T	A	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=TT->AT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	93:3:4:0:0,4:0,0:0,0:90,93	188:3:11:0:7,12:0,0:0,0:178,182
GL000224.1	9978	.	A	T	.	PASS	NT=ref;QSS=25;QSS_NT=25;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	310:3:0:0:303,372:1,2:0,0:3,5	715:8:0:0:688,847:0,2:0,0:19,25
GL000224.1	9983	.	G	T	.	PASS	NT=ref;QSS=26;QSS_NT=26;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	310:3:0:0:0,0:1,2:303,376:3,5	711:8:0:0:0,0:2,3:682,839:19,25
GL000224.1	10063	.	G	T	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	136:3:0:0:0,0:0,0:131,183:2,4	281:1:0:0:0,0:0,0:265,417:15,16
GL000224.1	16073	.	G	A	.	PASS	NT=ref;QSS=36;QSS_NT=36;SGT=GG->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	247:12:0:0:2,10:0,0:233,345:0,0	567:24:0:0:24,49:1,1:518,753:0,0
GL000224.1	21168	.	T	C	.	PASS	NT=ref;QSS=31;QSS_NT=31;SGT=TT->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	216:1:0:0:0,0:1,2:1,2:213,213	500:5:0:0:1,1:13,17:0,0:481,487
GL000224.1	21198	.	C	T	.	PASS	NT=ref;QSS=27;QSS_NT=27;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	219:2:0:0:1,1:214,216:0,0:2,3	499:7:0:0:0,0:476,483:0,0:16,26
GL000224.1	21217	.	C	A	.	PASS	NT=ref;QSS=45;QSS_NT=45;SGT=CC->AC;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	213:2:0:0:2,3:209,211:0,0:0,0	481:4:0:0:18,31:457,459:0,0:2,2
GL000224.1	21240	.	C	T	.	PASS	NT=ref;QSS=38;QSS_NT=38;SGT=CC->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	219:1:0:0:0,0:216,218:0,0:2,3	471:4:0:0:1,1:449,454:0,0:17,26
GL000224.1	21249	.	C	G	.	PASS	NT=ref;QSS=35;QSS_NT=35;SGT=CC->CG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	210:2:0:0:0,0:206,210:2,3:0,0	456:4:0:0:0,0:436,443:15,25:1,2
GL000224.1	21274	.	T	C	.	PASS	NT=ref;QSS=31;QSS_NT=31;SGT=TT->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	200:3:0:0:0,0:1,3:0,0:196,202	463:3:0:0:2,2:14,22:0,0:444,463
GL000224.1	67414	.	G	A	.	PASS	NT=ref;QSS=50;QSS_NT=50;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	107:2:0:0:0,0:0,0:105,106:0,0	226:6:0:0:11,17:0,0:209,211:0,0
GL000195.1	87752	.	C	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	186:1:1:0:0,0:182,183:0,0:3,4	443:11:2:0:0,0:420,428:0,2:12,17
GL000195.1	131962	.	C	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	59:1:0:0:0,0:58,72:0,0:0,1	171:2:0:0:0,0:161,191:0,0:8,14
GL000195.1	163388	.	T	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	26:0:0:0:0,1:0,0:0,0:26,26	49:2:0:0:0,0:7,12:0,0:40,42
GL000212.1	62542	.	A	G	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER||||555|AL356585.1|protein_coding|CODING|ENST00000391545||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	60:3:0:0:56,61:0,0:1,1:0,0	109:12:0:0:86,97:0,0:11,18:0,0
GL000212.1	149392	.	C	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:0:0:0:0,0:35,43:0,0:0,0	106:1:0:0:0,0:100,116:0,0:5,7
GL000212.1	159636	.	G	T	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=GG->GT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	51:0:0:0:0,0:0,0:51,56:0,1	148:2:0:0:1,1:0,0:138,160:7,9
GL000212.1	166243	.	A	C	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	72:0:0:0:72,91:0,1:0,0:0,0	204:1:0:0:196,241:7,13:0,0:0,0
GL000193.1	35428	.	T	C	.	PASS	NT=ref;QSS=24;QSS_NT=23;SGT=TT->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	190:15:0:0:0,0:1,7:1,10:173,193	341:20:0:0:0,0:14,16:9,18:298,316
GL000193.1	79596	.	A	C	.	PASS	NT=ref;QSS=32;QSS_NT=32;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||54|AC018692.1|protein_coding|CODING|ENST00000400767|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	242:52:0:0:187,366:2,3:0,1:1,1	454:105:0:0:333,714:16,19:0,0:0,0
GL000193.1	81389	.	C	T	.	PASS	NT=ref;QSS=35;QSS_NT=35;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||54|AC018692.1|protein_coding|CODING|ENST00000400767|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	238:5:0:0:0,0:230,289:0,0:3,3	451:19:0:0:0,0:418,554:0,0:14,19
GL000193.1	82911	.	G	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||54|AC018692.1|protein_coding|CODING|ENST00000400767|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	199:36:0:0:2,3:0,0:161,286:0,0	394:76:0:0:18,24:0,1:300,522:0,2
GL000193.1	89969	.	G	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=DOWNSTREAM(MODIFIER|||||AC018692.2|pseudogene|NON_CODING|ENST00000402833||1),INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER||||54|AC018692.1|protein_coding|CODING|ENST00000400767||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	54:2:0:0:0,3:0,0:50,89:2,3	116:2:0:0:8,11:0,0:102,173:4,6
GL000193.1	118150	.	A	C	.	PASS	NT=ref;QSS=24;QSS_NT=24;SGT=AA->AC;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	113:2:0:0:110,112:1,2:0,1:0,0	250:1:0:0:234,237:15,22:0,0:0,0
GL000194.1	14330	.	G	A	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	138:3:0:0:2,7:0,0:133,163:0,0	316:3:0:0:15,28:0,0:298,351:0,0
GL000194.1	17800	.	C	T	.	PASS	NT=ref;QSS=27;QSS_NT=27;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	58:3:0:0:0,0:55,64:0,0:0,0	163:4:0:0:1,1:145,169:0,0:13,21
GL000194.1	26563	.	A	G	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	171:6:0:0:158,170:6,7:1,5:0,0	357:16:0:0:315,337:14,19:12,22:0,0
GL000194.1	74746	.	C	G	.	PASS	NT=ref;QSS=23;QSS_NT=23;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	47:1:0:0:0,0:46,49:0,0:0,0	165:0:0:0:1,1:155,159:9,12:0,0
GL000194.1	74751	.	A	T	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	48:1:0:0:47,50:0,0:0,0:0,0	160:0:0:0:152,156:0,0:0,0:8,11
GL000194.1	74760	.	T	C	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	49:0:0:0:0,0:0,0:0,0:49,51	155:1:0:0:0,0:8,9:0,0:146,151
GL000194.1	85880	.	T	G	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=TT->GT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=UPSTREAM(MODIFIER|||||AC145212.2|miRNA|NON_CODING|ENST00000408558||1),UPSTREAM(MODIFIER|||||AC145212.3|miRNA|NON_CODING|ENST00000411129||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	166:18:0:0:0,1:0,1:1,6:147,205	345:32:0:0:0,0:3,12:12,17:298,395
GL000194.1	86077	.	C	A	.	PASS	NT=ref;QSS=28;QSS_NT=28;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=UPSTREAM(MODIFIER|||||AC145212.2|miRNA|NON_CODING|ENST00000408558||1),UPSTREAM(MODIFIER|||||AC145212.3|miRNA|NON_CODING|ENST00000411129||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	118:0:0:0:2,2:116,132:0,0:0,0	316:3:0:0:16,18:297,320:0,2:0,0
GL000194.1	91992	.	C	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	83:1:0:0:0,0:81,92:0,0:1,2	196:4:0:0:1,1:182,208:0,0:9,12
GL000194.1	110655	.	G	T	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	60:1:0:0:0,0:0,0:58,70:1,1	196:0:0:0:0,0:0,0:185,206:11,13
GL000194.1	121138	.	C	A	.	PASS	NT=ref;QSS=28;QSS_NT=28;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	102:1:0:0:1,1:100,109:0,0:0,0	275:1:0:0:22,25:252,276:0,0:0,0
GL000194.1	121139	.	C	A	.	PASS	NT=ref;QSS=28;QSS_NT=28;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	102:1:0:0:1,1:100,109:0,0:0,0	271:1:0:0:23,26:246,270:0,0:1,1
GL000194.1	124802	.	A	G	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	47:0:0:0:47,47:0,0:0,2:0,1	169:2:0:0:149,150:2,2:13,13:3,4
GL000194.1	141971	.	T	A	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	81:0:0:0:1,2:0,0:0,0:80,91	228:1:0:0:11,16:0,0:0,0:216,239
GL000194.1	164093	.	C	A	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:0:0:0:0,0:40,41:0,0:0,0	101:0:0:0:13,17:88,88:0,0:0,0
GL000194.1	177495	.	G	C	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	57:0:0:0:0,0:1,1:56,69:0,0	162:0:0:0:0,0:9,10:153,183:0,0
GL000194.1	177507	.	T	G	.	PASS	NT=ref;QSS=28;QSS_NT=28;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	59:1:0:0:0,0:0,0:0,0:58,73	164:3:0:0:0,0:0,0:9,10:152,186
GL000194.1	180998	.	C	T	.	PASS	NT=ref;QSS=29;QSS_NT=29;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	201:2:0:0:0,1:196,210:0,0:3,3	554:6:0:0:3,8:514,564:0,1:31,33
GL000225.1	6847	.	A	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=AA->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	435:32:1:0:397,1067:0,5:6,22:0,2	1030:70:0:0:932,2227:1,3:27,68:0,3
GL000225.1	17140	.	A	G	.	PASS	NT=ref;QSS=45;QSS_NT=45;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	382:71:4:0:307,646:0,2:3,21:1,17	901:150:8:0:712,1502:2,5:29,66:8,39
GL000225.1	19027	.	C	A	.	PASS	NT=ref;QSS=36;QSS_NT=36;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	105:29:36:0:0,24:75,723:1,3:0,30	276:75:47:0:8,81:189,1636:0,2:4,95
GL000225.1	24997	.	T	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->AT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	68:12:0:0:0,4:0,0:0,2:56,152	158:20:1:0:8,15:1,9:1,3:128,302
GL000225.1	25010	.	C	G	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=CC->CG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	92:9:0:0:0,1:80,198:0,0:3,4	196:28:0:0:0,3:156,388:9,14:3,9
GL000225.1	33371	.	C	T	.	PASS	NT=ref;QSS=39;QSS_NT=39;SGT=CC->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	209:12:0:0:0,0:196,408:0,2:1,14	484:43:0:0:0,3:426,883:0,3:15,77
GL000225.1	33406	.	G	A	.	PASS	NT=ref;QSS=33;QSS_NT=33;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	198:36:0:0:1,12:0,2:161,416:0,0	462:96:0:0:11,56:2,5:353,896:0,3
GL000225.1	33661	.	A	G	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=AA->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	335:29:0:0:303,948:0,1:3,26:0,4	794:95:1:0:675,2128:1,5:23,74:0,8
GL000225.1	34830	.	A	G	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	127:13:0:0:113,148:0,0:1,2:0,0	288:60:0:0:217,317:0,0:11,15:0,0
GL000225.1	40428	.	A	C	.	PASS	NT=ref;QSS=45;QSS_NT=45;SGT=AA->AC;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	170:44:0:0:126,325:0,2:0,0:0,0	339:75:0:0:251,694:12,18:1,1:0,0
GL000225.1	41543	.	A	T	.	PASS	NT=ref;QSS=39;QSS_NT=39;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	324:49:0:0:272,794:0,2:0,1:3,14	763:107:0:0:628,1676:2,13:3,6:23,61
GL000225.1	41570	.	A	T	.	PASS	NT=ref;QSS=55;QSS_NT=55;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	289:56:0:0:228,651:3,11:0,6:2,15	621:128:0:0:468,1331:7,23:1,11:17,58
GL000225.1	42659	.	C	G	.	PASS	NT=ref;QSS=36;QSS_NT=36;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	114:34:0:0:0,0:80,131:0,0:0,0	176:56:0:0:0,0:111,196:9,14:0,0
GL000225.1	49508	.	A	G	.	PASS	NT=ref;QSS=27;QSS_NT=27;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	189:31:0:0:156,308:0,0:2,10:0,2	480:69:0:0:397,714:0,1:14,29:0,5
GL000225.1	55358	.	G	C	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	92:2:0:0:0,0:0,2:90,128:0,0	180:5:0:0:0,0:6,16:169,251:0,0
GL000225.1	68573	.	A	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=AA->AT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	75:2:0:0:72,94:1,1:0,4:0,1	184:4:0:0:171,243:2,5:0,2:7,11
GL000225.1	74557	.	G	C	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	460:145:0:0:1,1:1,32:313,919:0,9	968:284:0:0:1,3:16,99:667,2073:0,24
GL000225.1	81372	.	C	T	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	88:4:0:0:0,1:83,184:1,1:0,7	177:11:0:0:2,3:155,353:1,4:8,48
GL000225.1	81396	.	G	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	84:5:0:0:0,1:0,1:79,151:0,1	175:7:0:0:7,29:1,1:160,303:0,1
GL000225.1	86383	.	C	A	.	PASS	NT=ref;QSS=78;QSS_NT=78;SGT=CC->AC;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	468:33:0:0:2,16:427,755:0,0:6,14	853:68:0:0:27,47:755,1404:2,2:1,16
GL000225.1	89603	.	C	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	94:24:0:0:1,2:69,95:0,0:0,0	213:59:0:0:7,12:147,207:0,0:0,0
GL000225.1	92099	.	T	G	.	PASS	NT=ref;QSS=44;QSS_NT=44;SGT=TT->GT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	173:20:0:0:0,0:0,1:1,5:152,283	346:40:0:0:0,0:0,0:11,20:295,601
GL000225.1	93169	.	C	T	.	PASS	NT=ref;QSS=25;QSS_NT=25;SGT=CC->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	104:27:0:0:0,1:77,160:0,1:0,3	222:52:0:0:1,3:160,327:2,8:7,19
GL000225.1	104164	.	A	T	.	PASS	NT=ref;QSS=66;QSS_NT=66;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	353:92:0:0:258,952:1,5:1,4:1,24	820:223:0:0:578,1919:1,9:0,4:18,83
GL000225.1	105763	.	C	T	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=CC->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	105:25:0:0:0,2:79,211:1,9:0,7	217:39:0:0:3,9:159,455:6,15:10,22
GL000225.1	107306	.	G	A	.	PASS	NT=ref;QSS=44;QSS_NT=44;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	260:13:0:0:3,8:0,0:240,598:4,7	579:25:0:0:20,45:0,3:521,1250:13,23
GL000225.1	109389	.	C	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:0:0:0:0,1:30,39:0,0:0,1	65:3:0:0:0,2:57,73:0,0:5,9
GL000225.1	115581	.	C	A	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	305:71:0:0:1,12:233,538:0,2:0,5	643:142:0:0:19,44:480,1081:0,0:2,12
GL000225.1	118466	.	C	G	.	PASS	NT=ref;QSS=50;QSS_NT=50;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	272:62:1:0:1,2:207,525:1,7:1,7	601:156:0:0:0,2:427,1184:16,55:2,15
GL000225.1	118470	.	G	C	.	PASS	NT=ref;QSS=52;QSS_NT=52;SGT=GG->CG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	279:37:0:0:0,1:1,19:240,534:1,2	629:107:0:0:0,5:26,93:496,1205:0,3
GL000225.1	121149	.	C	T	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	270:23:0:0:0,1:240,486:6,16:1,10	512:60:0:0:0,8:436,898:6,25:10,33
GL000225.1	121601	.	T	G	.	PASS	NT=ref;QSS=59;QSS_NT=59;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	134:9:0:0:0,0:1,1:0,4:124,289	249:23:0:0:0,1:1,4:10,26:215,576
GL000225.1	121854	.	G	C	.	PASS	NT=ref;QSS=33;QSS_NT=33;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	82:13:0:0:1,2:0,0:68,123:0,0	170:16:0:0:0,0:9,10:145,253:0,1
GL000225.1	127399	.	C	T	.	PASS	NT=ref;QSS=25;QSS_NT=25;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	466:166:0:0:0,0:298,1026:0,16:2,15	1069:384:0:0:0,4:660,2309:8,33:17,67
GL000225.1	127471	.	G	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	187:17:0:0:1,2:2,5:166,375:1,10	424:54:0:0:4,7:2,11:352,824:12,38
GL000225.1	137947	.	C	T	.	PASS	NT=ref;QSS=53;QSS_NT=53;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	417:71:0:0:2,12:337,744:3,15:4,12	966:163:0:0:6,34:756,1602:16,42:25,53
GL000225.1	140869	.	C	G	.	PASS	NT=ref;QSS=42;QSS_NT=42;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	114:14:0:0:0,2:100,777:0,23:0,26	248:23:0:0:0,5:214,1639:9,65:2,67
GL000225.1	206736	.	G	A	.	PASS	NT=ref;QSS=23;QSS_NT=23;SGT=GG->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	63:0:0:0:0,1:0,0:63,70:0,0	174:3:0:0:10,12:0,0:161,185:0,1
GL000225.1	209793	.	C	T	.	PASS	NT=ref;QSS=28;QSS_NT=28;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	205:1:0:0:1,1:199,221:1,1:3,3	543:6:0:0:1,1:520,582:0,0:16,19
GL000192.1	99319	.	G	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:0:0:0:0,0:0,0:31,32:0,0	95:2:0:0:7,7:0,0:86,95:0,0
GL000192.1	477360	.	C	G	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	42:0:0:0:0,0:42,42:0,0:0,0	115:0:0:0:0,0:109,109:6,6:0,0
GL000192.1	500091	.	G	A	.	PASS	NT=ref;QSS=24;QSS_NT=24;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	47:0:0:0:0,0:0,0:47,50:0,0	153:3:0:0:11,16:0,0:139,147:0,0