#CHROM	POS	ID	REF	ALT	QUAL	FILTER	INFO	FORMAT	NORMAL	TUMOR
1	10440	rs112155239	C	A	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||WASH7P|unprocessed_pseudogene|NON_CODING|ENST00000423562||1),DOWNSTREAM(MODIFIER|||||WASH7P|unprocessed_pseudogene|NON_CODING|ENST00000438504||1),DOWNSTREAM(MODIFIER|||||WASH7P|unprocessed_pseudogene|NON_CODING|ENST00000488147||1),DOWNSTREAM(MODIFIER|||||WASH7P|unprocessed_pseudogene|NON_CODING|ENST00000538476||1),DOWNSTREAM(MODIFIER|||||WASH7P|unprocessed_pseudogene|NON_CODING|ENST00000541675||1),INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||DDX11L1|processed_transcript|NON_CODING|ENST00000456328||1),UPSTREAM(MODIFIER|||||DDX11L1|transcribed_unprocessed_pseudogene|NON_CODING|ENST00000450305||1),UPSTREAM(MODIFIER|||||DDX11L1|unprocessed_pseudogene|NON_CODING|ENST00000515242||1),UPSTREAM(MODIFIER|||||DDX11L1|unprocessed_pseudogene|NON_CODING|ENST00000518655||1);RSPOS=10440;dbSNPBuildID=132;SSR=0;SAO=0;VP=050000000015000002000100;WGT=1;VC=SNV;OTH;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:0:64:0:0,2:40,109:0,0:0,0	97:4:84:0:6,16:87,215:0,0:0,0
1	136717	.	G	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||RP11-34P13.10|processed_pseudogene|NON_CODING|ENST00000442987||1),DOWNSTREAM(MODIFIER|||||RP11-34P13.11|processed_pseudogene|NON_CODING|ENST00000435839||1),DOWNSTREAM(MODIFIER|||||RP11-34P13.11|processed_pseudogene|NON_CODING|ENST00000537461||1),DOWNSTREAM(MODIFIER|||||RP11-34P13.12|antisense|NON_CODING|ENST00000484859||1),DOWNSTREAM(MODIFIER|||||RP11-34P13.14|antisense|NON_CODING|ENST00000493797||1),INTRON(MODIFIER|||||RP11-34P13.11|processed_pseudogene|NON_CODING|ENST00000423372|1|1),INTRON(MODIFIER|||||RP11-34P13.11|processed_pseudogene|NON_CODING|ENST00000494149|1|1),UPSTREAM(MODIFIER|||||RP11-34P13.7|antisense|NON_CODING|ENST00000453576||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:5:0:0:0,0:0,1:25,47:0,0	50:11:0:0:5,8:1,2:33,68:0,0
1	136828	.	G	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||RP11-34P13.10|processed_pseudogene|NON_CODING|ENST00000442987||1),DOWNSTREAM(MODIFIER|||||RP11-34P13.11|processed_pseudogene|NON_CODING|ENST00000435839||1),DOWNSTREAM(MODIFIER|||||RP11-34P13.11|processed_pseudogene|NON_CODING|ENST00000537461||1),DOWNSTREAM(MODIFIER|||||RP11-34P13.12|antisense|NON_CODING|ENST00000484859||1),DOWNSTREAM(MODIFIER|||||RP11-34P13.14|antisense|NON_CODING|ENST00000493797||1),INTRON(MODIFIER|||||RP11-34P13.11|processed_pseudogene|NON_CODING|ENST00000423372|1|1),INTRON(MODIFIER|||||RP11-34P13.11|processed_pseudogene|NON_CODING|ENST00000494149|1|1),UPSTREAM(MODIFIER|||||RP11-34P13.7|antisense|NON_CODING|ENST00000453576||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	28:4:0:0:0,0:0,1:24,41:0,0	46:7:0:0:3,9:5,7:31,62:0,0
1	725129	.	C	G	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||RP11-206L10.9|lincRNA|NON_CODING|ENST00000358533||1),DOWNSTREAM(MODIFIER|||||RP11-206L10.9|lincRNA|NON_CODING|ENST00000585826||1),DOWNSTREAM(MODIFIER|||||RP11-206L10.9|lincRNA|NON_CODING|ENST00000586928||1),DOWNSTREAM(MODIFIER|||||RP11-206L10.9|lincRNA|NON_CODING|ENST00000591702||1),DOWNSTREAM(MODIFIER|||||RP11-206L10.9|lincRNA|NON_CODING|ENST00000592547||1),INTRON(MODIFIER|||||RP11-206L10.9|lincRNA|NON_CODING|ENST00000429505|1|1),INTRON(MODIFIER|||||RP11-206L10.9|lincRNA|NON_CODING|ENST00000585745|1|1),INTRON(MODIFIER|||||RP11-206L10.9|lincRNA|NON_CODING|ENST00000585768|1|1),INTRON(MODIFIER|||||RP11-206L10.9|lincRNA|NON_CODING|ENST00000586288|1|1),INTRON(MODIFIER|||||RP11-206L10.9|lincRNA|NON_CODING|ENST00000587530|1|1),INTRON(MODIFIER|||||RP11-206L10.9|lincRNA|NON_CODING|ENST00000588951|1|1),INTRON(MODIFIER|||||RP11-206L10.9|lincRNA|NON_CODING|ENST00000589531|1|1),INTRON(MODIFIER|||||RP11-206L10.9|lincRNA|NON_CODING|ENST00000590848|1|1),INTRON(MODIFIER|||||RP11-206L10.9|lincRNA|NON_CODING|ENST00000591440|1|1),INTRON(MODIFIER|||||RP11-206L10.9|lincRNA|NON_CODING|ENST00000593022|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	61:16:24:0:3,8:42,154:0,5:0,2	135:39:37:0:3,10:86,322:7,21:0,2
1	757821	rs12725518	T	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||FAM87B|lincRNA|NON_CODING|ENST00000326734||1),DOWNSTREAM(MODIFIER|||||LINC00115|lincRNA|NON_CODING|ENST00000473798||1),DOWNSTREAM(MODIFIER|||||LINC00115|lincRNA|NON_CODING|ENST00000536430||1),INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||RP11-206L10.10|processed_transcript|NON_CODING|ENST00000435300||1);RSPOS=757821;dbSNPBuildID=121;SSR=0;SAO=0;VP=050000000001000002000100;WGT=1;VC=SNV;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	20:0:0:0:0,0:0,0:0,0:20,20	45:8:0:0:0,0:7,15:0,0:30,32
1	758119	.	A	C	.	PASS	NT=ref;QSS=37;QSS_NT=37;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||FAM87B|lincRNA|NON_CODING|ENST00000326734||1),DOWNSTREAM(MODIFIER|||||LINC00115|lincRNA|NON_CODING|ENST00000473798||1),DOWNSTREAM(MODIFIER|||||LINC00115|lincRNA|NON_CODING|ENST00000536430||1),INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||RP11-206L10.11|lincRNA|NON_CODING|ENST00000416570||1),UPSTREAM(MODIFIER|||||RP11-206L10.11|lincRNA|NON_CODING|ENST00000441765||1),UPSTREAM(MODIFIER|||||RP11-206L10.11|lincRNA|NON_CODING|ENST00000445118||1),UPSTREAM(MODIFIER|||||RP11-206L10.11|lincRNA|NON_CODING|ENST00000448975||1),UPSTREAM(MODIFIER|||||RP11-206L10.11|lincRNA|NON_CODING|ENST00000449005||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:1:0:0:33,34:1,1:0,0:0,0	83:2:0:0:53,56:26,28:2,2:0,0
1	924616	rs112833668	T	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=924616;dbSNPBuildID=132;SSR=0;SAO=0;VP=050000000001000102000100;WGT=1;VC=SNV;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:1:0:0:0,0:0,0:0,0:29,30	83:4:0:0:0,0:0,0:6,6:73,77
1	1127948	rs61768488	A	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=AA->AC;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER||||673|TTLL10|protein_coding|CODING|ENST00000379289|13|1),INTRON(MODIFIER||||673|TTLL10|protein_coding|CODING|ENST00000379290|13|1);RSPOS=1127948;GMAF=0.2454;dbSNPBuildID=129;SSR=0;SAO=0;VP=050000080005000116000100;GENEINFO=TTLL10:254173;WGT=1;VC=SNV;INT;ASP;GNO;KGPhase1;KGPROD;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	23:0:0:0:23,23:0,0:0,0:0,0	79:6:0:0:61,67:12,12:0,1:0,0
1	1204768	.	T	C	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=TT->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER||||100|UBE2J2|protein_coding|CODING|ENST00000422076|1|1),INTRON(MODIFIER||||195|UBE2J2|protein_coding|CODING|ENST00000435198|1|1),INTRON(MODIFIER||||207|UBE2J2|protein_coding|CODING|ENST00000347370|1|1),INTRON(MODIFIER||||207|UBE2J2|protein_coding|CODING|ENST00000348298|1|1),INTRON(MODIFIER||||207|UBE2J2|protein_coding|CODING|ENST00000400929|1|1),INTRON(MODIFIER||||259|UBE2J2|protein_coding|CODING|ENST00000349431|1|1),INTRON(MODIFIER||||259|UBE2J2|protein_coding|CODING|ENST00000360466|1|1),INTRON(MODIFIER||||275|UBE2J2|protein_coding|CODING|ENST00000400930|1|1),INTRON(MODIFIER||||42|UBE2J2|protein_coding|CODING|ENST00000488418|1|1),INTRON(MODIFIER||||59|UBE2J2|protein_coding|CODING|ENST00000509720|1|1),INTRON(MODIFIER||||70|UBE2J2|protein_coding|CODING|ENST00000502382|2|1),INTRON(MODIFIER|||||UBE2J2|nonsense_mediated_decay|CODING|ENST00000450390|1|1),INTRON(MODIFIER|||||UBE2J2|nonsense_mediated_decay|CODING|ENST00000464036|1|1),INTRON(MODIFIER|||||UBE2J2|nonsense_mediated_decay|CODING|ENST00000466752|1|1),INTRON(MODIFIER|||||UBE2J2|nonsense_mediated_decay|CODING|ENST00000473215|1|1),INTRON(MODIFIER|||||UBE2J2|nonsense_mediated_decay|CODING|ENST00000477894|1|1),INTRON(MODIFIER|||||UBE2J2|nonsense_mediated_decay|CODING|ENST00000503294|1|1),INTRON(MODIFIER|||||UBE2J2|processed_transcript|CODING|ENST00000491779|1|1),INTRON(MODIFIER|||||UBE2J2|retained_intron|CODING|ENST00000461142|1|1),UPSTREAM(MODIFIER||||224|UBE2J2|protein_coding|CODING|ENST00000339385||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:0:0:0:0,0:0,0:0,0:35,35	66:5:0:0:0,0:9,9:0,0:52,61
1	1285354	.	T	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=DOWNSTREAM(MODIFIER||||341|MXRA8|protein_coding|CODING|ENST00000342753||1),DOWNSTREAM(MODIFIER||||442|MXRA8|protein_coding|CODING|ENST00000309212||1),DOWNSTREAM(MODIFIER||||450|MXRA8|protein_coding|CODING|ENST00000445648||1),DOWNSTREAM(MODIFIER|||||MXRA8|nonsense_mediated_decay|CODING|ENST00000477278||1),DOWNSTREAM(MODIFIER|||||MXRA8|retained_intron|CODING|ENST00000473097||1),DOWNSTREAM(MODIFIER|||||MXRA8|retained_intron|CODING|ENST00000474033||1),DOWNSTREAM(MODIFIER|||||MXRA8|retained_intron|CODING|ENST00000476718||1),DOWNSTREAM(MODIFIER|||||MXRA8|retained_intron|CODING|ENST00000478517||1),INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER||||670|DVL1|protein_coding|CODING|ENST00000378891||1),UPSTREAM(MODIFIER||||695|DVL1|protein_coding|CODING|ENST00000378888||1),UPSTREAM(MODIFIER|||||DVL1|retained_intron|CODING|ENST00000472445||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	20:0:0:0:0,0:0,0:0,0:20,27	23:1:1:0:0,0:4,6:1,1:17,40
1	1317704	rs2454651	C	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||298|CCNL2|protein_coding|CODING|ENST00000408952||1),DOWNSTREAM(MODIFIER||||520|CCNL2|protein_coding|CODING|ENST00000400809||1),DOWNSTREAM(MODIFIER|||||CCNL2|nonsense_mediated_decay|CODING|ENST00000481223||1),DOWNSTREAM(MODIFIER|||||CCNL2|nonsense_mediated_decay|CODING|ENST00000488340||1),DOWNSTREAM(MODIFIER|||||CCNL2|processed_transcript|CODING|ENST00000505849||1),DOWNSTREAM(MODIFIER|||||CCNL2|retained_intron|CODING|ENST00000418865||1),DOWNSTREAM(MODIFIER|||||CCNL2|retained_intron|CODING|ENST00000463260||1),DOWNSTREAM(MODIFIER|||||CCNL2|retained_intron|CODING|ENST00000480479||1),DOWNSTREAM(MODIFIER|||||CCNL2|retained_intron|CODING|ENST00000482365||1),DOWNSTREAM(MODIFIER|||||CCNL2|retained_intron|CODING|ENST00000496007||1),DOWNSTREAM(MODIFIER|||||RP5-890O3.3|processed_pseudogene|NON_CODING|ENST00000435351||1),INTERGENIC(MODIFIER||||||||||1);RSPOS=1317704;RV;dbSNPBuildID=100;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	58:9:0:0:0,0:48,83:0,0:1,4	140:15:0:0:0,1:114,191:0,0:11,30
1	1317886	rs71628959	T	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->AT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=DOWNSTREAM(MODIFIER||||298|CCNL2|protein_coding|CODING|ENST00000408952||1),DOWNSTREAM(MODIFIER||||520|CCNL2|protein_coding|CODING|ENST00000400809||1),DOWNSTREAM(MODIFIER|||||CCNL2|nonsense_mediated_decay|CODING|ENST00000481223||1),DOWNSTREAM(MODIFIER|||||CCNL2|nonsense_mediated_decay|CODING|ENST00000488340||1),DOWNSTREAM(MODIFIER|||||CCNL2|processed_transcript|CODING|ENST00000505849||1),DOWNSTREAM(MODIFIER|||||CCNL2|retained_intron|CODING|ENST00000418865||1),DOWNSTREAM(MODIFIER|||||CCNL2|retained_intron|CODING|ENST00000463260||1),DOWNSTREAM(MODIFIER|||||CCNL2|retained_intron|CODING|ENST00000480479||1),DOWNSTREAM(MODIFIER|||||CCNL2|retained_intron|CODING|ENST00000482365||1),DOWNSTREAM(MODIFIER|||||CCNL2|retained_intron|CODING|ENST00000496007||1),DOWNSTREAM(MODIFIER|||||RP5-890O3.3|processed_pseudogene|NON_CODING|ENST00000435351||1),INTERGENIC(MODIFIER||||||||||1);RSPOS=1317886;dbSNPBuildID=130;SSR=0;SAO=0;VP=050100000001000102000100;WGT=1;VC=SNV;SLO;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:3:0:0:0,1:3,6:0,0:28,41	81:12:0:0:9,13:2,11:0,2:58,86
1	1317912	rs71628960	A	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||298|CCNL2|protein_coding|CODING|ENST00000408952||1),DOWNSTREAM(MODIFIER||||520|CCNL2|protein_coding|CODING|ENST00000400809||1),DOWNSTREAM(MODIFIER|||||CCNL2|nonsense_mediated_decay|CODING|ENST00000481223||1),DOWNSTREAM(MODIFIER|||||CCNL2|nonsense_mediated_decay|CODING|ENST00000488340||1),DOWNSTREAM(MODIFIER|||||CCNL2|processed_transcript|CODING|ENST00000505849||1),DOWNSTREAM(MODIFIER|||||CCNL2|retained_intron|CODING|ENST00000418865||1),DOWNSTREAM(MODIFIER|||||CCNL2|retained_intron|CODING|ENST00000463260||1),DOWNSTREAM(MODIFIER|||||CCNL2|retained_intron|CODING|ENST00000480479||1),DOWNSTREAM(MODIFIER|||||CCNL2|retained_intron|CODING|ENST00000482365||1),DOWNSTREAM(MODIFIER|||||CCNL2|retained_intron|CODING|ENST00000496007||1),DOWNSTREAM(MODIFIER|||||RP5-890O3.3|processed_pseudogene|NON_CODING|ENST00000435351||1),INTERGENIC(MODIFIER||||||||||1);RSPOS=1317912;dbSNPBuildID=130;SSR=0;SAO=0;VP=050100000001000102000100;WGT=1;VC=SNV;SLO;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:1:0:0:33,52:0,0:0,0:0,1	72:3:0:0:61,97:1,2:7,11:0,0
1	1335174	.	G	C	.	PASS	NT=ref;QSS=24;QSS_NT=24;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||149|MRPL20|protein_coding|CODING|ENST00000344843||1),DOWNSTREAM(MODIFIER||||66|MRPL20|protein_coding|CODING|ENST00000492508||1),DOWNSTREAM(MODIFIER|||||MRPL20|processed_transcript|CODING|ENST00000493287||1),DOWNSTREAM(MODIFIER|||||MRPL20|retained_intron|CODING|ENST00000487659||1),EXON(MODIFIER|||||RP4-758J18.2|retained_intron|CODING|ENST00000418833|1|1),INTRON(MODIFIER||||137|RP4-758J18.2|protein_coding|CODING|ENST00000448629|1|1),INTRON(MODIFIER||||88|RP4-758J18.2|protein_coding|CODING|ENST00000444362|1|1),INTRON(MODIFIER||||88|RP4-758J18.2|protein_coding|CODING|ENST00000576232|1|1),INTRON(MODIFIER|||||RP4-758J18.2|nonsense_mediated_decay|CODING|ENST00000447725|1|1),UPSTREAM(MODIFIER||||226|CCNL2|protein_coding|CODING|ENST00000408918||1),UPSTREAM(MODIFIER||||298|CCNL2|protein_coding|CODING|ENST00000408952||1),UPSTREAM(MODIFIER||||520|CCNL2|protein_coding|CODING|ENST00000400809||1),UPSTREAM(MODIFIER||||84|CCNL2|protein_coding|CODING|ENST00000497013||1),UPSTREAM(MODIFIER|||||CCNL2|nonsense_mediated_decay|CODING|ENST00000425598||1),UPSTREAM(MODIFIER|||||CCNL2|nonsense_mediated_decay|CODING|ENST00000481223||1),UPSTREAM(MODIFIER|||||CCNL2|nonsense_mediated_decay|CODING|ENST00000488340||1),UPSTREAM(MODIFIER|||||CCNL2|processed_transcript|CODING|ENST00000471930||1),UPSTREAM(MODIFIER|||||CCNL2|retained_intron|CODING|ENST00000463895||1),UPSTREAM(MODIFIER|||||CCNL2|retained_intron|CODING|ENST00000473872||1),UPSTREAM(MODIFIER|||||CCNL2|retained_intron|CODING|ENST00000496007||1),UPSTREAM(MODIFIER|||||RP4-758J18.2|processed_transcript|CODING|ENST00000453521||1),UPSTREAM(MODIFIER|||||RP4-758J18.2|retained_intron|CODING|ENST00000572242||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	48:0:0:0:0,0:0,0:47,47:1,1	76:3:0:0:0,0:6,7:67,69:0,0
1	1657395	rs112644525	T	C	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||246|SLC35E2|protein_coding|CODING|ENST00000355439|6|1),INTRON(MODIFIER||||246|SLC35E2|protein_coding|CODING|ENST00000400924|5|1),INTRON(MODIFIER|||||RP1-283E3.4|processed_transcript|NON_CODING|ENST00000417099|1|1),INTRON(MODIFIER|||||RP1-283E3.4|processed_transcript|NON_CODING|ENST00000577672|1|1),UPSTREAM(MODIFIER||||150|CDK11A|protein_coding|CODING|ENST00000479362||1),UPSTREAM(MODIFIER||||232|CDK11A|protein_coding|CODING|ENST00000378635||1),UPSTREAM(MODIFIER||||36|CDK11A|protein_coding|CODING|ENST00000401096||1),UPSTREAM(MODIFIER||||746|CDK11A|protein_coding|CODING|ENST00000356200||1),UPSTREAM(MODIFIER||||746|CDK11A|protein_coding|CODING|ENST00000378638||1),UPSTREAM(MODIFIER||||770|CDK11A|protein_coding|CODING|ENST00000358779||1),UPSTREAM(MODIFIER||||779|CDK11A|protein_coding|CODING|ENST00000357760||1),UPSTREAM(MODIFIER||||780|CDK11A|protein_coding|CODING|ENST00000404249||1),UPSTREAM(MODIFIER||||783|CDK11A|protein_coding|CODING|ENST00000378633||1),UPSTREAM(MODIFIER|||||CDK11A|nonsense_mediated_decay|CODING|ENST00000460465||1),UPSTREAM(MODIFIER|||||CDK11A|nonsense_mediated_decay|CODING|ENST00000509982||1),UPSTREAM(MODIFIER|||||CDK11A|retained_intron|CODING|ENST00000356937||1),UPSTREAM(MODIFIER|||||CDK11A|retained_intron|CODING|ENST00000487462||1),UPSTREAM(MODIFIER|||||CDK11A|retained_intron|CODING|ENST00000498810||1);RSPOS=1657395;dbSNPBuildID=132;SSR=0;SAO=0;VP=050000080009000002000100;GENEINFO=SLC35E2:9906;WGT=1;VC=SNV;INT;CFL;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	43:1:0:0:0,0:0,1:0,0:42,47	72:2:0:0:0,0:7,9:1,1:62,67
1	1992850	.	T	G	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||64|PRKCZ|protein_coding|CODING|ENST00000503297||1),INTRON(MODIFIER||||180|PRKCZ|protein_coding|CODING|ENST00000468310|3|1),INTRON(MODIFIER||||592|PRKCZ|protein_coding|CODING|ENST00000378567|4|1),INTRON(MODIFIER|||||PRKCZ|processed_transcript|CODING|ENST00000466651|3|1),INTRON(MODIFIER|||||PRKCZ|processed_transcript|CODING|ENST00000479566|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:4:0:0:0,0:0,0:1,1:27,31	53:6:0:0:0,0:0,0:12,14:35,39
1	2038218	rs4648804	C	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||135|PRKCZ|protein_coding|CODING|ENST00000486681|1|1),INTRON(MODIFIER||||180|PRKCZ|protein_coding|CODING|ENST00000468310|3|1),INTRON(MODIFIER||||20|PRKCZ|protein_coding|CODING|ENST00000495347|2|1),INTRON(MODIFIER||||409|PRKCZ|protein_coding|CODING|ENST00000400920|1|1),INTRON(MODIFIER||||409|PRKCZ|protein_coding|CODING|ENST00000400921|1|1),INTRON(MODIFIER||||488|PRKCZ|protein_coding|CODING|ENST00000461106|1|1),INTRON(MODIFIER||||592|PRKCZ|protein_coding|CODING|ENST00000378567|4|1),INTRON(MODIFIER||||60|PRKCZ|protein_coding|CODING|ENST00000461465|1|1),INTRON(MODIFIER||||69|PRKCZ|protein_coding|CODING|ENST00000496325|1|1),INTRON(MODIFIER||||72|PRKCZ|protein_coding|CODING|ENST00000482686|1|1),INTRON(MODIFIER||||97|PRKCZ|protein_coding|CODING|ENST00000470596|1|1),INTRON(MODIFIER|||||PRKCZ|nonsense_mediated_decay|CODING|ENST00000481140|1|1),INTRON(MODIFIER|||||PRKCZ|processed_transcript|CODING|ENST00000466651|3|1),UPSTREAM(MODIFIER||||108|PRKCZ|protein_coding|CODING|ENST00000470986||1);RSPOS=2038218;dbSNPBuildID=111;SSR=0;SAO=0;VP=050000080001000002000100;GENEINFO=PRKCZ:5590;WGT=1;VC=SNV;INT;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	76:7:0:0:0,0:69,88:0,1:0,1	114:8:0:0:0,0:102,123:0,1:4,5
1	2038337	rs79316634	G	A	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||135|PRKCZ|protein_coding|CODING|ENST00000486681|1|1),INTRON(MODIFIER||||180|PRKCZ|protein_coding|CODING|ENST00000468310|3|1),INTRON(MODIFIER||||20|PRKCZ|protein_coding|CODING|ENST00000495347|2|1),INTRON(MODIFIER||||409|PRKCZ|protein_coding|CODING|ENST00000400920|1|1),INTRON(MODIFIER||||409|PRKCZ|protein_coding|CODING|ENST00000400921|1|1),INTRON(MODIFIER||||488|PRKCZ|protein_coding|CODING|ENST00000461106|1|1),INTRON(MODIFIER||||592|PRKCZ|protein_coding|CODING|ENST00000378567|4|1),INTRON(MODIFIER||||60|PRKCZ|protein_coding|CODING|ENST00000461465|1|1),INTRON(MODIFIER||||69|PRKCZ|protein_coding|CODING|ENST00000496325|1|1),INTRON(MODIFIER||||72|PRKCZ|protein_coding|CODING|ENST00000482686|1|1),INTRON(MODIFIER||||97|PRKCZ|protein_coding|CODING|ENST00000470596|1|1),INTRON(MODIFIER|||||PRKCZ|nonsense_mediated_decay|CODING|ENST00000481140|1|1),INTRON(MODIFIER|||||PRKCZ|processed_transcript|CODING|ENST00000466651|3|1),UPSTREAM(MODIFIER||||108|PRKCZ|protein_coding|CODING|ENST00000470986||1);RSPOS=2038337;dbSNPBuildID=131;SSR=0;SAO=0;VP=050000080005000002000100;GENEINFO=PRKCZ:5590;WGT=1;VC=SNV;INT;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	46:3:0:0:0,0:1,1:42,45:0,0	84:5:0:0:6,9:0,0:73,77:0,0
1	2053104	rs71511329	G	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->GT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER||||108|PRKCZ|protein_coding|CODING|ENST00000470986|1|1),INTRON(MODIFIER||||135|PRKCZ|protein_coding|CODING|ENST00000486681|1|1),INTRON(MODIFIER||||180|PRKCZ|protein_coding|CODING|ENST00000468310|3|1),INTRON(MODIFIER||||20|PRKCZ|protein_coding|CODING|ENST00000495347|2|1),INTRON(MODIFIER||||409|PRKCZ|protein_coding|CODING|ENST00000400920|1|1),INTRON(MODIFIER||||409|PRKCZ|protein_coding|CODING|ENST00000400921|1|1),INTRON(MODIFIER||||488|PRKCZ|protein_coding|CODING|ENST00000461106|1|1),INTRON(MODIFIER||||592|PRKCZ|protein_coding|CODING|ENST00000378567|4|1),INTRON(MODIFIER||||60|PRKCZ|protein_coding|CODING|ENST00000461465|1|1),INTRON(MODIFIER||||69|PRKCZ|protein_coding|CODING|ENST00000496325|1|1),INTRON(MODIFIER||||72|PRKCZ|protein_coding|CODING|ENST00000482686|1|1),INTRON(MODIFIER||||81|PRKCZ|protein_coding|CODING|ENST00000470511|1|1),INTRON(MODIFIER||||97|PRKCZ|protein_coding|CODING|ENST00000470596|1|1),INTRON(MODIFIER|||||PRKCZ|nonsense_mediated_decay|CODING|ENST00000481140|1|1),INTRON(MODIFIER|||||PRKCZ|processed_transcript|CODING|ENST00000466651|3|1);RSPOS=2053104;dbSNPBuildID=130;SSR=0;SAO=0;VP=050100080001000102000100;GENEINFO=PRKCZ:5590;WGT=1;VC=SNV;SLO;INT;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:6:0:0:0,0:0,0:29,63:0,0	55:10:0:0:0,0:0,0:40,94:5,6
1	2055742	rs78390969	A	G	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||108|PRKCZ|protein_coding|CODING|ENST00000470986|1|1),INTRON(MODIFIER||||135|PRKCZ|protein_coding|CODING|ENST00000486681|1|1),INTRON(MODIFIER||||180|PRKCZ|protein_coding|CODING|ENST00000468310|3|1),INTRON(MODIFIER||||20|PRKCZ|protein_coding|CODING|ENST00000495347|2|1),INTRON(MODIFIER||||409|PRKCZ|protein_coding|CODING|ENST00000400920|1|1),INTRON(MODIFIER||||409|PRKCZ|protein_coding|CODING|ENST00000400921|1|1),INTRON(MODIFIER||||488|PRKCZ|protein_coding|CODING|ENST00000461106|1|1),INTRON(MODIFIER||||592|PRKCZ|protein_coding|CODING|ENST00000378567|4|1),INTRON(MODIFIER||||60|PRKCZ|protein_coding|CODING|ENST00000461465|1|1),INTRON(MODIFIER||||69|PRKCZ|protein_coding|CODING|ENST00000496325|1|1),INTRON(MODIFIER||||72|PRKCZ|protein_coding|CODING|ENST00000482686|1|1),INTRON(MODIFIER||||81|PRKCZ|protein_coding|CODING|ENST00000470511|1|1),INTRON(MODIFIER||||97|PRKCZ|protein_coding|CODING|ENST00000470596|1|1),INTRON(MODIFIER|||||PRKCZ|nonsense_mediated_decay|CODING|ENST00000481140|1|1),INTRON(MODIFIER|||||PRKCZ|processed_transcript|CODING|ENST00000466651|3|1);RSPOS=2055742;RV;dbSNPBuildID=131;SSR=0;SAO=0;VP=050000080005000402000100;GENEINFO=PRKCZ:5590;WGT=1;VC=SNV;INT;ASP;HD;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	96:34:0:0:62,148:0,0:0,3:0,0	188:72:0:0:110,275:0,1:6,22:0,0
1	2151318	.	C	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-181G12.4|processed_transcript|NON_CODING|ENST00000442483|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:1:0:0:0,0:31,32:0,0:0,0	81:2:0:0:7,7:72,75:0,0:0,0
1	2193258	.	A	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||728|SKI|protein_coding|CODING|ENST00000378536|1|1),INTRON(MODIFIER|||||SKI|processed_transcript|CODING|ENST00000478223|1|1),INTRON(MODIFIER|||||SKI|processed_transcript|CODING|ENST00000508416|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:3:0:0:36,39:0,0:0,0:0,0	77:2:0:0:70,72:0,0:5,5:0,0
1	2561953	.	G	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||770|MMEL1|protein_coding|CODING|ENST00000288709|1|1),INTRON(MODIFIER||||779|MMEL1|protein_coding|CODING|ENST00000378412|1|1),INTRON(MODIFIER|||||MMEL1|processed_transcript|CODING|ENST00000511099|1|1),UPSTREAM(MODIFIER||||622|MMEL1|protein_coding|CODING|ENST00000502556||1),UPSTREAM(MODIFIER|||||MMEL1|nonsense_mediated_decay|CODING|ENST00000504800||1),UPSTREAM(MODIFIER|||||RP13-436F16.1|antisense|NON_CODING|ENST00000427302||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:1:0:0:0,0:0,0:31,32:0,0	74:5:0:0:6,6:1,1:62,68:0,0
1	2581815	.	A	G	.	PASS	NT=ref;QSS=26;QSS_NT=26;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||369|TTC34|protein_coding|CODING|ENST00000401094|4|1),INTRON(MODIFIER||||566|TTC34|protein_coding|CODING|ENST00000401095|4|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	52:1:0:0:51,54:0,0:0,0:0,0	81:4:0:0:66,74:1,1:10,12:0,0
1	2620848	.	C	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->CG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER||||369|TTC34|protein_coding|CODING|ENST00000401094|4|1),INTRON(MODIFIER||||566|TTC34|protein_coding|CODING|ENST00000401095|4|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	66:1:0:0:0,0:65,82:0,0:0,0	128:5:0:0:1,1:116,170:6,7:0,0
1	2622657	.	A	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER||||369|TTC34|protein_coding|CODING|ENST00000401094|4|1),INTRON(MODIFIER||||566|TTC34|protein_coding|CODING|ENST00000401095|4|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	91:28:0:0:62,154:1,4:0,5:0,0	220:56:0:0:157,321:0,4:7,22:0,0
1	2624337	.	G	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||369|TTC34|protein_coding|CODING|ENST00000401094|4|1),INTRON(MODIFIER||||566|TTC34|protein_coding|CODING|ENST00000401095|4|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	66:11:0:0:0,4:0,0:55,114:0,0	140:19:0:0:6,15:1,4:114,211:0,1
1	2689577	.	T	G	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||369|TTC34|protein_coding|CODING|ENST00000401094|4|1),INTRON(MODIFIER||||566|TTC34|protein_coding|CODING|ENST00000401095|4|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	75:18:0:0:0,2:2,8:0,6:55,199	141:18:0:0:0,2:1,5:6,23:116,387
1	2824395	.	C	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:1:0:0:0,0:29,29:0,1:0,0	79:0:0:0:0,0:75,77:0,0:4,4
1	2866569	.	T	C	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	23:0:0:0:0,0:1,1:1,1:21,24	82:6:0:0:0,0:17,19:3,5:56,64
1	2945632	.	G	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:0:0:0:0,0:0,0:30,30:0,0	92:2:0:0:7,7:0,0:83,87:0,0
1	2945654	.	C	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:2:0:0:0,0:27,28:0,1:0,0	73:5:0:0:7,7:61,66:0,1:0,1
1	3204397	.	A	G	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=AA->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER||||1092|PRDM16|protein_coding|CODING|ENST00000512462|2|1),INTRON(MODIFIER||||1177|PRDM16|protein_coding|CODING|ENST00000514189|3|1),INTRON(MODIFIER||||1178|PRDM16|protein_coding|CODING|ENST00000511072|3|1),INTRON(MODIFIER||||1256|PRDM16|protein_coding|CODING|ENST00000442529|3|1),INTRON(MODIFIER||||1257|PRDM16|protein_coding|CODING|ENST00000378391|3|1),INTRON(MODIFIER||||1275|PRDM16|protein_coding|CODING|ENST00000441472|3|1),INTRON(MODIFIER||||1276|PRDM16|protein_coding|CODING|ENST00000270722|3|1),INTRON(MODIFIER||||1276|PRDM16|protein_coding|CODING|ENST00000378398|3|1),INTRON(MODIFIER|||||PRDM16|processed_transcript|CODING|ENST00000463591|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:5:0:0:26,33:1,1:0,2:0,1	65:4:0:0:47,51:3,3:11,16:0,1
1	3771633	.	A	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||198|CEP104|protein_coding|CODING|ENST00000428079|1|1),INTRON(MODIFIER||||244|CEP104|protein_coding|CODING|ENST00000378223|1|1),INTRON(MODIFIER||||925|CEP104|protein_coding|CODING|ENST00000378230|1|1),INTRON(MODIFIER|||||CEP104|retained_intron|CODING|ENST00000494653|1|1),UPSTREAM(MODIFIER||||103|DFFB|protein_coding|CODING|ENST00000341385||1),UPSTREAM(MODIFIER||||116|DFFB|protein_coding|CODING|ENST00000378212||1),UPSTREAM(MODIFIER||||270|DFFB|protein_coding|CODING|ENST00000338895||1),UPSTREAM(MODIFIER||||338|DFFB|protein_coding|CODING|ENST00000378209||1),UPSTREAM(MODIFIER|||||DFFB|nonsense_mediated_decay|CODING|ENST00000339350||1),UPSTREAM(MODIFIER|||||DFFB|nonsense_mediated_decay|CODING|ENST00000378206||1),UPSTREAM(MODIFIER|||||DFFB|nonsense_mediated_decay|CODING|ENST00000468793||1),UPSTREAM(MODIFIER|||||DFFB|nonsense_mediated_decay|CODING|ENST00000475969||1),UPSTREAM(MODIFIER|||||DFFB|nonsense_mediated_decay|CODING|ENST00000477548||1),UPSTREAM(MODIFIER|||||DFFB|nonsense_mediated_decay|CODING|ENST00000491998||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:3:0:0:26,27:0,2:0,0:0,0	81:1:0:0:67,69:4,4:9,9:0,0
1	3818434	.	A	C	.	PASS	NT=ref;QSS=23;QSS_NT=23;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP13-15E13.1|processed_transcript|NON_CODING|ENST00000413332|1|1),INTRON(MODIFIER|||||RP13-15E13.1|processed_transcript|NON_CODING|ENST00000439488|1|1),INTRON(MODIFIER|||||RP13-15E13.1|processed_transcript|NON_CODING|ENST00000442673|1|1),UPSTREAM(MODIFIER||||243|C1orf174|protein_coding|CODING|ENST00000361605||1),UPSTREAM(MODIFIER|||||C1orf174|processed_transcript|CODING|ENST00000486765||1),UPSTREAM(MODIFIER|||||C1orf174|retained_intron|CODING|ENST00000474140||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:1:0:0:37,41:0,0:0,0:0,0	72:0:0:0:60,60:12,12:0,0:0,0
1	3818438	.	C	A	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP13-15E13.1|processed_transcript|NON_CODING|ENST00000413332|1|1),INTRON(MODIFIER|||||RP13-15E13.1|processed_transcript|NON_CODING|ENST00000439488|1|1),INTRON(MODIFIER|||||RP13-15E13.1|processed_transcript|NON_CODING|ENST00000442673|1|1),UPSTREAM(MODIFIER||||243|C1orf174|protein_coding|CODING|ENST00000361605||1),UPSTREAM(MODIFIER|||||C1orf174|processed_transcript|CODING|ENST00000486765||1),UPSTREAM(MODIFIER|||||C1orf174|retained_intron|CODING|ENST00000474140||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:2:0:0:0,0:35,40:1,1:0,0	71:0:0:0:9,9:61,61:1,1:0,0
1	4345621	.	G	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:0:0:0:0,0:0,0:29,29:0,0	65:2:0:0:0,0:0,0:58,60:5,5
1	4395859	.	A	G	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:0:0:0:39,39:0,0:0,0:0,0	79:1:0:0:69,69:0,1:9,9:0,0
1	4786357	.	G	A	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||411|AJAP1|protein_coding|CODING|ENST00000378190|2|1),INTRON(MODIFIER||||411|AJAP1|protein_coding|CODING|ENST00000378191|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:0:0:0:0,0:0,0:37,37:0,0	67:0:0:0:5,5:0,0:62,62:0,0
1	4802226	.	G	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER||||411|AJAP1|protein_coding|CODING|ENST00000378190|2|1),INTRON(MODIFIER||||411|AJAP1|protein_coding|CODING|ENST00000378191|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	28:0:0:0:0,0:0,0:28,28:0,0	56:2:0:0:5,5:0,0:49,50:0,0
1	5730833	rs77366761	G	A	.	PASS	NT=ref;QSS=24;QSS_NT=24;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||RP11-154H17.1|lincRNA|NON_CODING|ENST00000413887||1);RSPOS=5730833;dbSNPBuildID=131;SSR=0;SAO=0;VP=050000000005000102000100;WGT=1;VC=SNV;ASP;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	96:0:0:0:0,1:0,0:96,106:0,0	220:3:0:0:9,14:0,0:208,243:0,0
1	8426989	rs74049617	C	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1012|RERE|protein_coding|CODING|ENST00000476556|2|1),INTRON(MODIFIER||||1298|RERE|protein_coding|CODING|ENST00000377464|6|1),INTRON(MODIFIER||||1566|RERE|protein_coding|CODING|ENST00000337907|13|1),INTRON(MODIFIER||||1566|RERE|protein_coding|CODING|ENST00000400908|12|1),INTRON(MODIFIER||||25|RERE|protein_coding|CODING|ENST00000488215|2|1),INTRON(MODIFIER||||584|RERE|protein_coding|CODING|ENST00000400907|11|1),INTRON(MODIFIER|||||RERE|processed_transcript|CODING|ENST00000460659|2|1),INTRON(MODIFIER|||||RERE|processed_transcript|CODING|ENST00000465125|2|1),INTRON(MODIFIER|||||RERE|processed_transcript|CODING|ENST00000492766|3|1),UPSTREAM(MODIFIER||||176|RERE|protein_coding|CODING|ENST00000505225||1);RSPOS=8426989;dbSNPBuildID=130;SSR=0;SAO=0;VP=050100080005000102000100;GENEINFO=RERE:473;WGT=1;VC=SNV;SLO;INT;ASP;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	28:1:1:0:0,0:27,28:0,0:0,0	78:2:1:0:10,11:66,67:0,0:0,0
1	8533738	.	C	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1298|RERE|protein_coding|CODING|ENST00000377464|4|1),INTRON(MODIFIER||||1566|RERE|protein_coding|CODING|ENST00000337907|11|1),INTRON(MODIFIER||||1566|RERE|protein_coding|CODING|ENST00000400908|10|1),INTRON(MODIFIER||||584|RERE|protein_coding|CODING|ENST00000400907|9|1),INTRON(MODIFIER||||88|RERE|protein_coding|CODING|ENST00000464972|5|1),INTRON(MODIFIER|||||RERE|retained_intron|CODING|ENST00000480342|10|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:1:0:0:0,0:32,32:0,1:0,0	74:3:0:0:0,0:65,69:0,0:6,6
1	8902463	.	G	C	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	44:0:0:0:0,0:1,1:43,43:0,0	66:3:0:0:0,0:5,7:58,61:0,0
1	9647813	.	C	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||321|SLC25A33|protein_coding|CODING|ENST00000302692||1),INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER||||392|TMEM201|protein_coding|CODING|ENST00000340305||1),UPSTREAM(MODIFIER||||642|TMEM201|protein_coding|CODING|ENST00000377376||1),UPSTREAM(MODIFIER||||666|TMEM201|protein_coding|CODING|ENST00000340381||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:1:0:0:0,1:32,32:0,0:0,0	61:1:0:0:0,0:55,58:0,0:5,5
1	10581785	.	A	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||160|PEX14|protein_coding|CODING|ENST00000491661|2|1),INTRON(MODIFIER||||313|PEX14|protein_coding|CODING|ENST00000538836|2|1),INTRON(MODIFIER||||377|PEX14|protein_coding|CODING|ENST00000356607|2|1),INTRON(MODIFIER|||||PEX14|retained_intron|CODING|ENST00000472851|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	28:2:0:0:25,28:1,1:0,0:0,0	56:1:0:0:47,48:1,1:7,7:0,0
1	11044417	.	C	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER||||656|C1orf127|protein_coding|CODING|ENST00000377008||1),UPSTREAM(MODIFIER||||823|C1orf127|protein_coding|CODING|ENST00000377004||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:7:0:0:0,0:32,39:0,0:0,0	63:4:0:0:0,0:55,59:0,0:4,4
1	11232247	.	G	T	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||2549|MTOR|protein_coding|CODING|ENST00000361445|28|1),UPSTREAM(MODIFIER|||||snoU13|snoRNA|NON_CODING|ENST00000458795||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	41:1:0:0:0,0:0,0:40,41:0,0	47:0:0:0:0,0:0,0:42,43:5,5
1	12622588	.	T	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:2:0:0:0,0:0,0:0,0:29,32	93:0:0:0:0,0:0,0:5,5:88,88
1	12682942	.	C	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:1:0:0:0,0:34,35:0,0:0,0	86:0:0:0:0,0:82,82:0,0:4,4
1	13353235	.	G	C	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-248D7.2|unprocessed_pseudogene|NON_CODING|ENST00000453094|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:1:0:0:0,0:0,0:35,37:0,0	84:0:0:0:0,0:10,10:74,75:0,0
1	14485775	.	T	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||92|C1orf196|protein_coding|CODING|ENST00000412667|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:0:0:0:0,0:0,0:0,0:33,33	71:0:0:0:1,1:6,6:0,0:64,64
1	15618987	.	G	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||FHAD1|processed_transcript|CODING|ENST00000462113||1),INTRON(MODIFIER||||1376|FHAD1|protein_coding|CODING|ENST00000417793|4|1),INTRON(MODIFIER||||1412|FHAD1|protein_coding|CODING|ENST00000358897|4|1),INTRON(MODIFIER||||1412|FHAD1|protein_coding|CODING|ENST00000375998|3|1),INTRON(MODIFIER||||1453|FHAD1|protein_coding|CODING|ENST00000375999|4|1),INTRON(MODIFIER|||||FHAD1|nonsense_mediated_decay|CODING|ENST00000436024|4|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:0:0:0:0,0:0,0:30,30:0,0	87:2:0:0:5,5:0,0:80,82:0,0
1	16831444	.	A	G	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:0:0:0:34,34:0,0:0,0:0,0	71:3:0:0:64,67:0,0:4,5:0,0
1	16833904	rs2985134	C	T	.	PASS	NT=ref;QSS=24;QSS_NT=24;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=16833904;GMAF=0.1543;dbSNPBuildID=101;SSR=0;SAO=0;VP=050000000005000016000100;WGT=1;VC=SNV;ASP;KGPhase1;KGPROD;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	50:1:0:0:0,1:49,52:0,0:0,0	126:1:0:0:0,0:118,125:0,0:7,10
1	16860350	.	C	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||RP5-875O13.1|processed_transcript|NON_CODING|ENST00000415386||1),DOWNSTREAM(MODIFIER|||||U1|snRNA|NON_CODING|ENST00000516290||1),INTRON(MODIFIER|||||RP4-798A10.5|processed_transcript|NON_CODING|ENST00000427204|2|1),UPSTREAM(MODIFIER||||131|AL355149.1|protein_coding|CODING|ENST00000357301||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	41:1:0:0:0,0:40,44:0,0:0,0	96:4:0:0:0,1:87,95:0,1:5,8
1	16863700	.	C	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=UPSTREAM(MODIFIER|||||RP4-798A10.5|processed_transcript|NON_CODING|ENST00000427204||1),UPSTREAM(MODIFIER|||||RP5-875O13.1|processed_transcript|NON_CODING|ENST00000415386||1),UPSTREAM(MODIFIER|||||U1|snRNA|NON_CODING|ENST00000516290||1),UTR_3_PRIME(MODIFIER||||131|AL355149.1|protein_coding|CODING|ENST00000357301|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:2:0:0:0,0:37,40:0,0:0,0	128:2:0:0:0,0:118,120:0,0:8,9
1	16902943	rs3896429	T	C	.	PASS	NT=ref;QSS=24;QSS_NT=24;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=EXON(MODIFIER|||||NBPF1|processed_transcript|NON_CODING|ENST00000287968|1|1),EXON(MODIFIER|||||NBPF1|processed_transcript|NON_CODING|ENST00000430580|11|1),EXON(MODIFIER|||||NBPF1|processed_transcript|NON_CODING|ENST00000432949|3|1),INTRON(MODIFIER|||||NBPF1|processed_transcript|NON_CODING|ENST00000392963|11|1),UPSTREAM(MODIFIER|||||NBPF1|processed_transcript|NON_CODING|ENST00000420031||1);RSPOS=16902943;dbSNPBuildID=108;SSR=0;SAO=0;VP=050100000005000102000100;WGT=1;VC=SNV;SLO;ASP;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	90:2:0:0:0,0:1,1:0,0:87,92	192:1:0:0:0,0:9,9:0,0:182,190
1	17015916	.	T	C	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=TT->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=DOWNSTREAM(MODIFIER|||||ESPNP|processed_transcript|NON_CODING|ENST00000492551||1),DOWNSTREAM(MODIFIER|||||ESPNP|transcribed_unprocessed_pseudogene|NON_CODING|ENST00000270691||1),DOWNSTREAM(MODIFIER|||||RP1-163M9.6|processed_pseudogene|NON_CODING|ENST00000549765||1),INTRON(MODIFIER|||||RP1-163M9.6|processed_transcript|NON_CODING|ENST00000414828|2|1),UPSTREAM(MODIFIER|||||EIF1AXP1|processed_pseudogene|NON_CODING|ENST00000419267||1),UPSTREAM(MODIFIER|||||RP1-163M9.6|transcribed_processed_pseudogene|NON_CODING|ENST00000429207||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	57:1:0:0:0,0:0,1:0,0:56,57	141:2:0:0:0,0:10,10:0,0:129,132
1	17453103	.	T	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:0:0:0:0,0:0,0:0,0:29,29	60:0:0:0:0,0:4,4:0,0:56,57
1	17520813	.	C	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=EXON(MODIFIER|||||RP11-380J14.1|lincRNA|NON_CODING|ENST00000412427|3|1),EXON(MODIFIER|||||RP11-380J14.1|lincRNA|NON_CODING|ENST00000539219|4|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:0:0:0:0,0:30,30:0,0:0,0	81:0:0:0:5,5:76,76:0,0:0,0
1	18002285	.	T	G	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1052|ARHGEF10L|protein_coding|CODING|ENST00000375408|17|1),INTRON(MODIFIER||||1067|ARHGEF10L|protein_coding|CODING|ENST00000434513|25|1),INTRON(MODIFIER||||1240|ARHGEF10L|protein_coding|CODING|ENST00000375415|24|1),INTRON(MODIFIER||||1240|ARHGEF10L|protein_coding|CODING|ENST00000452522|25|1),INTRON(MODIFIER||||1279|ARHGEF10L|protein_coding|CODING|ENST00000361221|26|1),INTRON(MODIFIER||||982|ARHGEF10L|protein_coding|CODING|ENST00000167825|15|1),INTRON(MODIFIER|||||ARHGEF10L|processed_transcript|CODING|ENST00000469726|17|1),INTRON(MODIFIER|||||ARHGEF10L|processed_transcript|CODING|ENST00000475356|12|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:1:0:0:0,0:0,0:0,0:38,39	89:7:0:0:0,0:0,0:10,13:72,77
1	18058797	.	T	G	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-473A10.2|lincRNA|NON_CODING|ENST00000430540|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:1:0:0:0,0:1,1:0,0:32,33	71:2:0:0:0,0:0,0:10,12:59,59
1	19562925	.	T	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||EMC1|processed_transcript|CODING|ENST00000467423||1),INTRON(MODIFIER||||971|EMC1|protein_coding|CODING|ENST00000375208|11|1),INTRON(MODIFIER||||992|EMC1|protein_coding|CODING|ENST00000375199|12|1),INTRON(MODIFIER||||993|EMC1|protein_coding|CODING|ENST00000477853|12|1),INTRON(MODIFIER|||||RP1-43E13.2|antisense|NON_CODING|ENST00000437898|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	28:1:0:0:0,0:0,0:0,1:27,27	67:0:0:0:0,0:9,9:0,0:58,60
1	20790246	.	A	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:0:0:0:37,47:0,0:0,0:0,0	73:3:1:0:64,73:6,10:0,1:0,1
1	20853727	.	C	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||RP11-401M16.3|processed_pseudogene|NON_CODING|ENST00000443195||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	28:0:0:0:0,0:28,28:0,0:0,0	70:0:0:0:0,0:64,65:6,6:0,0
1	21750515	rs77373782	A	G	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||NBPF2P|unprocessed_pseudogene|NON_CODING|ENST00000426482||1),DOWNSTREAM(MODIFIER|||||NBPF2P|unprocessed_pseudogene|NON_CODING|ENST00000453025||1),INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||HS6ST1P1|processed_pseudogene|NON_CODING|ENST00000481504||1),UPSTREAM(MODIFIER|||||HS6ST1P1|processed_pseudogene|NON_CODING|ENST00000544728||1);RSPOS=21750515;dbSNPBuildID=131;SSR=0;SAO=0;VP=050000000001040102000100;WGT=1;VC=SNV;VLD;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:0:0:0:36,36:0,0:0,0:0,0	76:0:0:0:67,68:0,0:9,11:0,0
1	23995495	.	A	G	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||RP11-223J15.2|unprocessed_pseudogene|NON_CODING|ENST00000451300||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:0:0:0:34,35:0,0:0,0:0,0	70:2:0:0:61,63:0,0:7,8:0,0
1	24224822	rs111950234	C	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||RP11-4M23.2|processed_pseudogene|NON_CODING|ENST00000412176||1),INTRON(MODIFIER||||360|CNR2|protein_coding|CODING|ENST00000374472|1|1),INTRON(MODIFIER||||360|CNR2|protein_coding|CODING|ENST00000536471|2|1);RSPOS=24224822;dbSNPBuildID=132;SSR=0;SAO=0;VP=050000080001000002000100;GENEINFO=CNR2:1269;WGT=1;VC=SNV;INT;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	28:1:0:0:0,0:27,28:0,0:0,0	48:4:0:0:0,0:39,45:0,0:5,5
1	25125743	.	T	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||CLIC4|processed_transcript|CODING|ENST00000489758||1),INTRON(MODIFIER||||253|CLIC4|protein_coding|CODING|ENST00000374379|2|1),INTRON(MODIFIER|||||CLIC4|nonsense_mediated_decay|CODING|ENST00000488683|2|1),INTRON(MODIFIER|||||CLIC4|processed_transcript|CODING|ENST00000497755|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:1:0:0:0,0:0,0:0,0:30,33	74:4:0:0:0,0:6,9:0,0:64,70
1	25672057	.	T	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||U6|snRNA|NON_CODING|ENST00000516706||1),DOWNSTREAM(MODIFIER|||||snoU13|snoRNA|NON_CODING|ENST00000459565||1),INTRON(MODIFIER||||157|TMEM50A|protein_coding|CODING|ENST00000374358|3|1),INTRON(MODIFIER|||||TMEM50A|processed_transcript|CODING|ENST00000468704|3|1),INTRON(MODIFIER|||||TMEM50A|processed_transcript|CODING|ENST00000480937|3|1),INTRON(MODIFIER|||||TMEM50A|processed_transcript|CODING|ENST00000487234|1|1),INTRON(MODIFIER|||||TMEM50A|processed_transcript|CODING|ENST00000491936|1|1),INTRON(MODIFIER|||||TMEM50A|processed_transcript|CODING|ENST00000498135|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	25:0:0:0:0,0:0,0:0,0:25,25	55:0:0:0:0,0:1,1:7,7:47,47
1	26066759	.	C	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||401|MAN1C1|protein_coding|CODING|ENST00000374329|1|1),INTRON(MODIFIER||||450|MAN1C1|protein_coding|CODING|ENST00000263979|3|1),INTRON(MODIFIER||||630|MAN1C1|protein_coding|CODING|ENST00000374332|2|1),INTRON(MODIFIER|||||MAN1C1|processed_transcript|CODING|ENST00000473891|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:2:0:0:0,1:29,30:0,0:0,0	69:0:0:0:0,0:62,62:0,0:7,7
1	26422676	.	T	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:0:0:0:0,0:0,0:0,0:33,33	64:0:0:0:0,0:4,4:0,0:60,60
1	26698392	.	C	T	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=CC->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER||||121|ZNF683|protein_coding|CODING|ENST00000453132|1|1),INTRON(MODIFIER||||187|ZNF683|protein_coding|CODING|ENST00000416125|2|1),INTRON(MODIFIER||||196|ZNF683|protein_coding|CODING|ENST00000423508|1|1),INTRON(MODIFIER||||281|ZNF683|protein_coding|CODING|ENST00000455900|1|1),INTRON(MODIFIER||||504|ZNF683|protein_coding|CODING|ENST00000349618|1|1),INTRON(MODIFIER||||504|ZNF683|protein_coding|CODING|ENST00000374204|1|1),INTRON(MODIFIER||||524|ZNF683|protein_coding|CODING|ENST00000403843|1|1),INTRON(MODIFIER||||524|ZNF683|protein_coding|CODING|ENST00000436292|1|1),UPSTREAM(MODIFIER||||153|ZNF683|protein_coding|CODING|ENST00000454975||1),UPSTREAM(MODIFIER||||268|ZNF683|protein_coding|CODING|ENST00000451801||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	43:1:0:0:0,0:42,43:0,0:0,0	83:2:0:0:0,0:77,81:0,0:4,4
1	27494471	.	C	G	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER||||134|SLC9A1|protein_coding|CODING|ENST00000374084||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:1:0:0:0,0:38,40:0,0:0,0	56:1:0:0:0,0:51,53:4,4:0,0
1	27906912	.	G	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||148|AHDC1|protein_coding|CODING|ENST00000407475|1|1),INTRON(MODIFIER||||1603|AHDC1|protein_coding|CODING|ENST00000247087|2|1),INTRON(MODIFIER||||1603|AHDC1|protein_coding|CODING|ENST00000374011|1|1),INTRON(MODIFIER|||||AHDC1|processed_transcript|CODING|ENST00000479753|1|1),INTRON(MODIFIER|||||AHDC1|processed_transcript|CODING|ENST00000480033|2|1),INTRON(MODIFIER|||||AHDC1|processed_transcript|CODING|ENST00000482400|2|1),INTRON(MODIFIER|||||AHDC1|processed_transcript|CODING|ENST00000487743|1|1),INTRON(MODIFIER|||||AHDC1|processed_transcript|CODING|ENST00000490295|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	28:1:0:0:0,0:0,0:27,28:0,0	75:0:0:0:0,0:6,6:69,69:0,0
1	28249190	.	G	A	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:0:0:0:0,0:0,0:38,39:0,0	71:3:0:0:7,9:0,0:61,63:0,0
1	31269637	.	T	C	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:0:0:0:0,0:0,0:0,0:36,37	85:2:0:0:0,0:9,9:0,0:74,76
1	32523464	.	T	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||KHDRBS1|processed_transcript|CODING|ENST00000484270|11|1),INTRON(MODIFIER|||||RP11-277A4.4|antisense|NON_CODING|ENST00000366152|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:1:0:0:0,0:0,0:0,0:29,30	66:0:0:0:0,0:9,10:0,0:57,58
1	32778540	.	A	G	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||210|HDAC1|protein_coding|CODING|ENST00000428704|2|1),INTRON(MODIFIER||||289|HDAC1|protein_coding|CODING|ENST00000373541|2|1),INTRON(MODIFIER||||482|HDAC1|protein_coding|CODING|ENST00000373548|2|1),INTRON(MODIFIER|||||HDAC1|processed_transcript|CODING|ENST00000463172|2|1),INTRON(MODIFIER|||||HDAC1|processed_transcript|CODING|ENST00000472928|1|1),INTRON(MODIFIER|||||HDAC1|processed_transcript|CODING|ENST00000481281|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:2:0:0:34,38:0,0:0,0:1,1	85:0:0:0:77,77:0,0:8,8:0,0
1	33019252	.	T	C	.	PASS	NT=ref;QSS=35;QSS_NT=35;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||340|ZBTB8A|protein_coding|CODING|ENST00000316459|2|1),INTRON(MODIFIER||||441|ZBTB8A|protein_coding|CODING|ENST00000373510|2|1),INTRON(MODIFIER|||||RP1-27O5.3|nonsense_mediated_decay|NON_CODING|ENST00000480336|7|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:0:0:0:0,0:0,0:1,1:32,32	66:2:0:0:1,1:16,18:1,1:46,46
1	33282187	.	G	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||528|YARS|protein_coding|CODING|ENST00000373477|1|1),INTRON(MODIFIER|||||YARS|processed_transcript|CODING|ENST00000481895|1|1),UPSTREAM(MODIFIER||||119|S100PBP|protein_coding|CODING|ENST00000526230||1),UPSTREAM(MODIFIER||||129|S100PBP|protein_coding|CODING|ENST00000530710||1),UPSTREAM(MODIFIER||||145|S100PBP|protein_coding|CODING|ENST00000482212||1),UPSTREAM(MODIFIER||||170|S100PBP|protein_coding|CODING|ENST00000531256||1),UPSTREAM(MODIFIER||||341|S100PBP|protein_coding|CODING|ENST00000398243||1),UPSTREAM(MODIFIER||||408|S100PBP|protein_coding|CODING|ENST00000373475||1),UPSTREAM(MODIFIER||||408|S100PBP|protein_coding|CODING|ENST00000373476||1),UPSTREAM(MODIFIER||||40|S100PBP|protein_coding|CODING|ENST00000529027||1),UPSTREAM(MODIFIER|||||S100PBP|processed_transcript|CODING|ENST00000356689||1),UPSTREAM(MODIFIER|||||S100PBP|processed_transcript|CODING|ENST00000474103||1),UPSTREAM(MODIFIER|||||S100PBP|processed_transcript|CODING|ENST00000477248||1),UPSTREAM(MODIFIER|||||S100PBP|processed_transcript|CODING|ENST00000531123||1),UPSTREAM(MODIFIER|||||YARS|processed_transcript|CODING|ENST00000472692||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	26:0:0:0:0,0:0,0:26,26:0,0	64:1:0:0:8,8:0,0:55,55:0,0
1	34156664	.	G	C	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1167|CSMD2|protein_coding|CODING|ENST00000373380|4|1),INTRON(MODIFIER||||3631|CSMD2|protein_coding|CODING|ENST00000373381|25|1),INTRON(MODIFIER||||426|CSMD2|protein_coding|CODING|ENST00000373388|4|1),INTRON(MODIFIER|||||CSMD2|nonsense_mediated_decay|CODING|ENST00000241312|25|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:0:0:0:0,0:0,0:38,38:0,0	66:1:0:0:0,0:5,5:60,61:0,0
1	34260620	.	T	G	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||225|CSMD2|protein_coding|CODING|ENST00000338325|4|1),INTRON(MODIFIER||||3631|CSMD2|protein_coding|CODING|ENST00000373381|10|1),INTRON(MODIFIER|||||CSMD2|nonsense_mediated_decay|CODING|ENST00000241312|10|1),INTRON(MODIFIER|||||CSMD2|processed_transcript|CODING|ENST00000471438|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:2:0:0:0,0:0,0:0,1:30,31	58:6:0:0:0,0:0,1:10,13:42,45
1	34262159	.	C	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||225|CSMD2|protein_coding|CODING|ENST00000338325|4|1),INTRON(MODIFIER||||3631|CSMD2|protein_coding|CODING|ENST00000373381|10|1),INTRON(MODIFIER|||||CSMD2|nonsense_mediated_decay|CODING|ENST00000241312|10|1),INTRON(MODIFIER|||||CSMD2|processed_transcript|CODING|ENST00000471438|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	28:0:0:0:0,0:28,28:0,0:0,0	86:0:0:0:5,5:81,81:0,0:0,0
1	34574151	.	T	C	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||3631|CSMD2|protein_coding|CODING|ENST00000373381|1|1),INTRON(MODIFIER|||||CSMD2|nonsense_mediated_decay|CODING|ENST00000241312|1|1),UPSTREAM(MODIFIER|||||RNA5SP42|rRNA|NON_CODING|ENST00000364278||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	41:0:0:0:0,0:0,0:0,0:41,41	82:1:0:0:0,0:7,7:1,1:73,74
1	35062887	rs74488814	G	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=35062887;dbSNPBuildID=131;SSR=0;SAO=0;VP=050000000001000002000100;WGT=1;VC=SNV;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	27:0:0:0:0,0:0,0:27,27:0,0	67:1:0:0:5,6:1,1:59,59:1,1
1	35535257	.	T	C	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||460|ZMYM1|protein_coding|CODING|ENST00000417119|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	41:1:0:0:0,0:0,0:0,0:40,41	108:1:0:0:0,0:8,8:0,0:99,100
1	37134521	.	C	T	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:0:0:0:0,0:35,35:0,0:0,0	75:0:0:0:0,0:67,67:0,0:8,8
1	37424471	.	T	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||872|GRIK3|protein_coding|CODING|ENST00000373093|1|1),INTRON(MODIFIER||||919|GRIK3|protein_coding|CODING|ENST00000373091|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:3:0:0:0,0:0,0:0,0:27,31	45:4:2:0:0,0:6,6:0,1:35,39
1	37514038	.	C	G	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:0:0:0:0,0:31,31:0,0:0,0	81:2:0:0:0,0:73,77:6,6:0,0
1	38336927	.	T	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||175|INPP5B|protein_coding|CODING|ENST00000458109||1),INTRON(MODIFIER||||749|INPP5B|protein_coding|CODING|ENST00000373027|13|1),INTRON(MODIFIER||||913|INPP5B|protein_coding|CODING|ENST00000373024|19|1),INTRON(MODIFIER||||993|INPP5B|protein_coding|CODING|ENST00000373023|19|1),INTRON(MODIFIER||||993|INPP5B|protein_coding|CODING|ENST00000373026|18|1),INTRON(MODIFIER|||||INPP5B|processed_transcript|CODING|ENST00000470364|1|1),INTRON(MODIFIER|||||INPP5B|processed_transcript|CODING|ENST00000474758|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:1:0:0:0,0:0,0:1,1:29,32	71:4:0:0:0,0:7,9:1,1:59,61
1	40072460	.	C	G	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->CG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	23:1:0:0:0,0:22,23:0,0:0,0	47:2:0:0:0,0:37,39:8,8:0,0
1	40281536	.	C	A	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	42:0:0:0:0,0:42,43:0,0:0,0	67:0:0:0:4,4:63,63:0,0:0,0
1	42518926	.	T	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:0:0:0:0,0:0,0:0,0:29,29	79:1:0:0:4,4:0,0:0,0:74,75
1	42789839	.	T	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||381|FOXJ3|protein_coding|CODING|ENST00000445886|1|1),INTRON(MODIFIER||||588|FOXJ3|protein_coding|CODING|ENST00000361776|1|1),INTRON(MODIFIER||||622|FOXJ3|protein_coding|CODING|ENST00000361346|1|1),INTRON(MODIFIER||||622|FOXJ3|protein_coding|CODING|ENST00000372572|1|1),INTRON(MODIFIER||||622|FOXJ3|protein_coding|CODING|ENST00000372573|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:4:0:0:0,1:0,0:0,1:26,30	81:3:0:0:1,1:12,14:0,0:65,66
1	42974793	.	C	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||572|CCDC30|protein_coding|CODING|ENST00000507855|3|1),INTRON(MODIFIER||||783|CCDC30|protein_coding|CODING|ENST00000428554|7|1),INTRON(MODIFIER|||||CCDC30|nonsense_mediated_decay|CODING|ENST00000477155|7|1),INTRON(MODIFIER|||||CCDC30|nonsense_mediated_decay|CODING|ENST00000509712|2|1),INTRON(MODIFIER|||||CCDC30|retained_intron|CODING|ENST00000495044|4|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	28:0:0:0:0,0:28,28:0,0:0,0	61:0:0:0:0,0:55,55:0,0:6,6
1	44605580	.	G	A	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||389|KLF17|protein_coding|CODING|ENST00000372299||1),INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||RP4-675G8.2|unprocessed_pseudogene|NON_CODING|ENST00000458152||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	43:3:0:0:0,0:0,0:40,48:0,0	59:2:0:0:5,6:0,0:52,66:0,0
1	45373006	.	T	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->GT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER||||412|EIF2B3|protein_coding|CODING|ENST00000372183|5|1),INTRON(MODIFIER||||452|EIF2B3|protein_coding|CODING|ENST00000360403|5|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:2:0:0:0,0:0,0:0,1:37,38	80:5:0:0:1,1:0,2:5,6:69,70
1	46557019	.	G	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||205|PIK3R3|protein_coding|CODING|ENST00000425892|2|1),INTRON(MODIFIER||||366|PIK3R3|protein_coding|CODING|ENST00000340332|3|1),INTRON(MODIFIER||||402|PIK3R3|protein_coding|CODING|ENST00000354242|2|1),INTRON(MODIFIER||||402|PIK3R3|protein_coding|CODING|ENST00000423209|1|1),INTRON(MODIFIER||||461|PIK3R3|protein_coding|CODING|ENST00000262741|1|1),INTRON(MODIFIER||||461|PIK3R3|protein_coding|CODING|ENST00000372006|2|1),INTRON(MODIFIER||||461|PIK3R3|protein_coding|CODING|ENST00000420542|2|1),INTRON(MODIFIER||||507|PIK3R3|protein_coding|CODING|ENST00000540385|1|1),INTRON(MODIFIER|||||PIK3R3|processed_transcript|CODING|ENST00000493202|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	28:0:0:0:0,0:0,0:28,29:0,0	68:1:0:0:0,0:5,5:62,63:0,0
1	48059401	.	A	C	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=AA->AC;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	19:2:0:0:16,17:0,0:0,1:1,1	61:6:0:0:38,38:16,22:0,0:1,1
1	48676235	rs139714205	G	A	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||RP5-1024N4.2|lincRNA|NON_CODING|ENST00000431986||1),INTERGENIC(MODIFIER||||||||||1);RSPOS=48676235;GMAF=0.0673;dbSNPBuildID=134;SSR=0;SAO=0;VP=050000000005000014000100;WGT=1;VC=SNV;ASP;KGPhase1;KGPROD	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:0:0:0:0,0:0,0:35,35:0,0	69:2:0:0:6,6:0,0:60,62:1,1
1	49651486	.	C	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||217|AGBL4|protein_coding|CODING|ENST00000371836|4|1),INTRON(MODIFIER||||320|AGBL4|protein_coding|CODING|ENST00000371838|4|1),INTRON(MODIFIER||||503|AGBL4|protein_coding|CODING|ENST00000371839|4|1),INTRON(MODIFIER|||||RP11-141A19.1|antisense|NON_CODING|ENST00000456002|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:0:0:0:0,0:31,31:0,0:0,0	75:0:0:0:0,0:69,70:0,0:6,6
1	49897240	.	G	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||217|AGBL4|protein_coding|CODING|ENST00000371836|3|1),INTRON(MODIFIER||||320|AGBL4|protein_coding|CODING|ENST00000371838|3|1),INTRON(MODIFIER||||503|AGBL4|protein_coding|CODING|ENST00000371839|3|1),INTRON(MODIFIER|||||AGBL4-IT1|sense_intronic|NON_CODING|ENST00000457061|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:0:0:0:0,0:0,0:32,32:0,0	80:0:0:0:4,4:0,0:75,75:1,1
1	50326445	rs191215411	A	C	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||217|AGBL4|protein_coding|CODING|ENST00000371836|1|1),INTRON(MODIFIER||||320|AGBL4|protein_coding|CODING|ENST00000371838|1|1),INTRON(MODIFIER||||503|AGBL4|protein_coding|CODING|ENST00000371839|1|1);RSPOS=50326445;GMAF=0.0027;dbSNPBuildID=135;SSR=0;SAO=0;VP=050000080005000014000100;GENEINFO=AGBL4:84871;WGT=1;VC=SNV;INT;ASP;KGPhase1;KGPROD	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:0:0:0:35,35:0,0:0,0:0,0	82:5:0:0:71,78:6,6:0,0:0,0
1	53177902	.	C	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||NDUFS5P3|processed_pseudogene|NON_CODING|ENST00000450668||1),INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||Metazoa_SRP|misc_RNA|NON_CODING|ENST00000498506||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:1:0:0:0,0:29,30:0,0:0,0	79:0:0:0:0,0:74,75:5,5:0,0
1	53562951	.	G	A	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=GG->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER||||560|SLC1A7|protein_coding|CODING|ENST00000371494|5|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	61:2:0:0:0,0:0,0:58,59:1,2	106:3:0:0:6,6:0,1:97,100:0,0
1	53905702	.	C	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||SLC25A3P1|processed_transcript|NON_CODING|ENST00000562700||1),UPSTREAM(MODIFIER|||||SLC25A3P1|processed_transcript|NON_CODING|ENST00000563752||1),UPSTREAM(MODIFIER|||||SLC25A3P1|processed_transcript|NON_CODING|ENST00000566100||1),UPSTREAM(MODIFIER|||||SLC25A3P1|processed_transcript|NON_CODING|ENST00000569142||1),UPSTREAM(MODIFIER|||||SLC25A3P1|transcribed_processed_pseudogene|NON_CODING|ENST00000443844||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:0:0:0:0,0:34,34:0,0:0,0	80:1:0:0:0,0:71,73:0,0:8,8
1	54218670	.	T	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	25:1:0:0:0,0:0,0:0,0:24,25	73:0:0:0:0,0:11,11:0,0:62,62
1	54483872	.	G	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||AL353898.1|pseudogene|NON_CODING|ENST00000358975||1),INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER||||116|LDLRAD1|protein_coding|CODING|ENST00000371362||1),UPSTREAM(MODIFIER||||162|LDLRAD1|protein_coding|CODING|ENST00000545928||1),UPSTREAM(MODIFIER||||166|LDLRAD1|protein_coding|CODING|ENST00000420619||1),UPSTREAM(MODIFIER||||205|LDLRAD1|protein_coding|CODING|ENST00000371360||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	28:0:0:0:0,0:1,1:27,27:0,0	72:0:0:0:10,10:0,0:62,62:0,0
1	54558086	.	C	T	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||RP4-758J24.4|processed_pseudogene|NON_CODING|ENST00000444055||1),INTRON(MODIFIER||||208|TCEANC2|protein_coding|CODING|ENST00000234827|4|1),INTRON(MODIFIER||||238|TCEANC2|protein_coding|CODING|ENST00000371331|3|1),INTRON(MODIFIER|||||TCEANC2|processed_transcript|CODING|ENST00000498272|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:0:0:0:0,0:40,40:0,0:0,0	83:1:0:0:0,0:75,75:0,0:7,8
1	54799667	.	T	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||100|SSBP3|protein_coding|CODING|ENST00000525990|4|1),INTRON(MODIFIER||||278|SSBP3|protein_coding|CODING|ENST00000417664|4|1),INTRON(MODIFIER||||361|SSBP3|protein_coding|CODING|ENST00000371319|4|1),INTRON(MODIFIER||||368|SSBP3|protein_coding|CODING|ENST00000357475|4|1),INTRON(MODIFIER||||388|SSBP3|protein_coding|CODING|ENST00000371320|4|1),INTRON(MODIFIER|||||SSBP3|processed_transcript|CODING|ENST00000326956|1|1),INTRON(MODIFIER|||||SSBP3|processed_transcript|CODING|ENST00000528787|1|1),INTRON(MODIFIER|||||SSBP3|processed_transcript|CODING|ENST00000533946|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:1:0:0:0,0:0,0:0,0:32,34	82:2:0:0:0,0:7,7:0,0:73,76
1	54832329	.	C	A	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||100|SSBP3|protein_coding|CODING|ENST00000525990|4|1),INTRON(MODIFIER||||278|SSBP3|protein_coding|CODING|ENST00000417664|4|1),INTRON(MODIFIER||||361|SSBP3|protein_coding|CODING|ENST00000371319|4|1),INTRON(MODIFIER||||368|SSBP3|protein_coding|CODING|ENST00000357475|4|1),INTRON(MODIFIER||||388|SSBP3|protein_coding|CODING|ENST00000371320|4|1),INTRON(MODIFIER|||||SSBP3|processed_transcript|CODING|ENST00000533946|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:0:0:0:0,0:36,36:0,0:0,0	76:0:0:0:5,5:71,71:0,0:0,0
1	55795131	.	C	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:0:0:0:0,0:34,34:0,0:0,0	75:0:0:0:0,0:71,72:0,0:4,4
1	58766286	.	G	A	.	PASS	NT=ref;QSS=23;QSS_NT=23;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||DAB1|processed_transcript|CODING|ENST00000485760|4|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	21:1:3:0:0,0:0,0:20,27:0,0	45:4:8:0:10,12:0,0:31,45:0,0
1	62837647	.	T	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:1:0:0:0,0:0,0:0,0:31,32	63:1:0:0:0,0:4,4:0,0:58,60
1	63237353	.	A	G	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:1:0:0:33,35:0,0:0,0:0,0	61:3:0:0:54,56:0,0:4,5:0,0
1	63479321	rs192298591	C	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||RP11-5P4.1|lincRNA|NON_CODING|ENST00000420285||1),UPSTREAM(MODIFIER|||||RP11-5P4.1|lincRNA|NON_CODING|ENST00000420659||1),UPSTREAM(MODIFIER|||||RP11-5P4.1|lincRNA|NON_CODING|ENST00000425352||1);RSPOS=63479321;GMAF=0.0527;dbSNPBuildID=135;SSR=0;SAO=0;VP=050000000005000014000100;WGT=1;VC=SNV;ASP;KGPhase1;KGPROD	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:1:0:0:0,1:36,36:0,0:0,0	77:2:0:0:0,0:71,74:0,0:4,4
1	63491271	.	T	G	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=EXON(MODIFIER|||||RP11-5P4.2|lincRNA|NON_CODING|ENST00000418091|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:0:0:0:0,0:1,1:0,0:31,31	79:1:0:0:0,0:1,2:7,7:70,70
1	63504283	.	T	G	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=TT->GT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:1:0:0:0,2:0,0:1,2:27,28	52:1:0:0:2,2:0,0:13,15:36,36
1	63504578	.	C	G	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	45:1:0:0:0,0:43,47:1,1:0,0	47:1:0:0:0,0:39,44:7,7:0,0
1	63791142	rs186103174	T	A	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||478|FOXD3|protein_coding|CODING|ENST00000371116||1),INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||RP4-792G4.2|antisense|NON_CODING|ENST00000418244||1),UPSTREAM(MODIFIER|||||RP4-792G4.2|antisense|NON_CODING|ENST00000426393||1),UPSTREAM(MODIFIER|||||RP4-792G4.2|antisense|NON_CODING|ENST00000427268||1),UPSTREAM(MODIFIER|||||RP4-792G4.2|antisense|NON_CODING|ENST00000431294||1),UPSTREAM(MODIFIER|||||RP4-792G4.2|antisense|NON_CODING|ENST00000449386||1);RSPOS=63791142;GMAF=0.0069;dbSNPBuildID=135;SSR=0;SAO=0;VP=050000040005000014000100;GENEINFO=FOXD3:27022;WGT=1;VC=SNV;R3;ASP;KGPhase1;KGPROD	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:2:0:0:0,0:0,0:0,0:37,39	72:0:0:0:4,4:1,1:0,0:67,67
1	64106449	.	T	A	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||365|PGM1|protein_coding|CODING|ENST00000540265|7|1),INTRON(MODIFIER||||562|PGM1|protein_coding|CODING|ENST00000371084|7|1),INTRON(MODIFIER||||580|PGM1|protein_coding|CODING|ENST00000371083|7|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:0:0:0:0,0:0,0:0,0:36,36	66:2:0:0:7,7:0,0:0,0:57,59
1	68805756	.	G	C	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:0:0:0:0,0:0,0:33,33:0,0	67:0:0:0:1,1:5,5:61,61:0,0
1	72619801	.	C	A	.	PASS	NT=ref;QSS=26;QSS_NT=26;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||308|NEGR1|protein_coding|CODING|ENST00000434200|1|1),INTRON(MODIFIER||||354|NEGR1|protein_coding|CODING|ENST00000357731|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	51:0:0:0:0,0:51,51:0,0:0,0	77:1:0:0:6,6:70,71:0,0:0,0
1	72672760	.	A	T	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||308|NEGR1|protein_coding|CODING|ENST00000434200|1|1),INTRON(MODIFIER||||354|NEGR1|protein_coding|CODING|ENST00000357731|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:1:0:0:36,37:0,0:1,1:0,0	71:3:0:0:61,64:0,0:0,0:7,7
1	73376736	.	C	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	28:0:0:0:0,0:28,29:0,0:0,0	70:2:0:0:0,1:62,63:0,0:6,6
1	73513024	.	T	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:1:0:0:0,0:0,0:0,0:30,31	71:0:0:0:1,1:1,1:4,4:65,65
1	75500071	.	T	G	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	45:1:0:0:0,0:2,2:0,0:42,43	76:1:0:0:0,0:0,0:6,6:69,70
1	78455330	.	T	C	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||171|DNAJB4|protein_coding|CODING|ENST00000426517|1|1),INTRON(MODIFIER|||||DNAJB4|processed_transcript|CODING|ENST00000477671|2|1),INTRON(MODIFIER|||||DNAJB4|processed_transcript|CODING|ENST00000484662|1|1),INTRON(MODIFIER|||||DNAJB4|processed_transcript|CODING|ENST00000487931|1|1),INTRON(MODIFIER|||||GIPC2|processed_transcript|CODING|ENST00000476882|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:0:0:0:0,0:0,0:0,0:36,36	69:0:0:0:0,0:5,5:0,0:64,64
1	78771082	.	A	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||359|PTGFR|protein_coding|CODING|ENST00000370758|1|1),INTRON(MODIFIER|||||RP11-183M13.1|processed_transcript|NON_CODING|ENST00000413519|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:0:0:0:34,34:0,0:0,0:0,0	79:2:0:0:70,72:0,0:0,0:7,7
1	80061336	.	A	C	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:0:0:0:35,36:0,0:0,0:0,0	84:0:0:0:79,80:5,5:0,0:0,0
1	82135768	.	T	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1384|LPHN2|protein_coding|CODING|ENST00000370721|3|1),INTRON(MODIFIER||||1416|LPHN2|protein_coding|CODING|ENST00000370730|3|1),INTRON(MODIFIER||||1431|LPHN2|protein_coding|CODING|ENST00000370727|3|1),INTRON(MODIFIER||||1459|LPHN2|protein_coding|CODING|ENST00000370728|3|1),INTRON(MODIFIER||||1461|LPHN2|protein_coding|CODING|ENST00000370723|3|1),INTRON(MODIFIER||||1474|LPHN2|protein_coding|CODING|ENST00000370725|3|1),INTRON(MODIFIER|||||LPHN2|processed_transcript|CODING|ENST00000469377|4|1),INTRON(MODIFIER|||||LPHN2|processed_transcript|CODING|ENST00000473719|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:0:0:0:0,0:0,0:0,0:32,32	69:2:0:0:7,7:0,0:0,0:60,62
1	84746416	.	A	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||SNORA2|snoRNA|NON_CODING|ENST00000363089||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:0:0:0:35,35:0,0:0,0:0,0	76:0:0:0:71,72:0,0:0,0:5,5
1	85088324	rs201170452	C	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=85088324;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000000005000402000100;WGT=1;VC=SNV;ASP;HD;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:3:0:0:0,0:27,30:0,0:0,0	87:2:0:0:0,0:77,79:0,0:8,8
1	86694724	.	T	C	.	PASS	NT=ref;QSS=24;QSS_NT=24;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:0:0:0:0,0:0,0:0,0:38,38	70:1:0:0:0,0:11,11:0,0:58,59
1	87114637	.	A	T	.	PASS	NT=ref;QSS=23;QSS_NT=23;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||CLCA3P|processed_transcript|NON_CODING|ENST00000284054|11|1),INTRON(MODIFIER|||||CLCA3P|processed_transcript|NON_CODING|ENST00000466454|12|1),INTRON(MODIFIER|||||CLCA3P|transcribed_unprocessed_pseudogene|NON_CODING|ENST00000490028|12|1),INTRON(MODIFIER|||||RP4-651E10.4|antisense|NON_CODING|ENST00000456587|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	45:0:0:0:45,45:0,0:0,0:0,0	67:1:0:0:60,61:1,1:0,0:5,5
1	88574318	.	A	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	25:0:0:0:25,25:0,0:0,0:0,0	55:0:0:0:49,49:0,0:6,6:0,0
1	89305399	.	G	A	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||984|PKN2|protein_coding|CODING|ENST00000370521||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	42:0:0:0:0,0:0,0:42,42:0,0	55:0:0:0:4,4:0,0:50,51:1,1
1	91148307	.	G	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	28:0:0:0:0,0:0,0:28,28:0,0	87:1:0:0:4,4:0,0:82,83:0,0
1	93332179	.	T	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||428|FAM69A|protein_coding|CODING|ENST00000370310|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:2:0:0:0,0:0,0:0,0:27,29	72:0:0:0:0,0:5,5:0,0:67,67
1	93410493	.	C	G	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||428|FAM69A|protein_coding|CODING|ENST00000370310|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:0:0:0:0,0:35,37:0,0:0,0	78:0:0:0:0,0:71,71:7,7:0,0
1	95973873	.	T	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||AL356479.1|miRNA|NON_CODING|ENST00000401218||1),UPSTREAM(MODIFIER|||||RP11-286B14.1|lincRNA|NON_CODING|ENST00000411798||1),UPSTREAM(MODIFIER|||||RP11-286B14.1|lincRNA|NON_CODING|ENST00000432146||1),UPSTREAM(MODIFIER|||||RP11-286B14.1|lincRNA|NON_CODING|ENST00000440116||1),UPSTREAM(MODIFIER|||||RP11-286B14.1|lincRNA|NON_CODING|ENST00000456933||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:0:0:0:0,0:0,0:0,0:30,30	78:2:0:0:5,5:0,0:0,1:71,72
1	96338947	.	C	T	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:0:0:0:0,0:39,39:0,0:0,0	69:1:0:0:0,0:63,64:0,0:5,5
1	97633063	.	T	C	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1025|DPYD|protein_coding|CODING|ENST00000370192|20|1),INTRON(MODIFIER|||||DPYD-AS1|antisense|NON_CODING|ENST00000422980|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:0:0:0:0,0:0,0:0,0:36,36	73:0:0:0:0,0:4,4:0,0:69,69
1	98094168	.	G	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1025|DPYD|protein_coding|CODING|ENST00000370192|8|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:1:0:0:0,0:0,0:36,37:0,0	82:0:0:0:2,2:0,0:76,76:4,4
1	98251890	.	G	A	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1025|DPYD|protein_coding|CODING|ENST00000370192|3|1),INTRON(MODIFIER||||156|DPYD|protein_coding|CODING|ENST00000423006|2|1),INTRON(MODIFIER||||173|DPYD|protein_coding|CODING|ENST00000306031|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	42:0:0:0:0,0:0,0:42,42:0,0	87:0:0:0:10,10:0,0:77,77:0,0
1	99375283	.	C	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||316|LPPR5|protein_coding|CODING|ENST00000370188|5|1),INTRON(MODIFIER||||321|LPPR5|protein_coding|CODING|ENST00000263177|5|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	26:0:0:0:0,0:26,27:0,0:0,0	72:0:0:0:9,9:63,65:0,0:0,0
1	100625156	rs57005698	C	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||335|LRRC39|protein_coding|CODING|ENST00000342895|3|1),INTRON(MODIFIER||||335|LRRC39|protein_coding|CODING|ENST00000370137|4|1),INTRON(MODIFIER||||339|LRRC39|protein_coding|CODING|ENST00000370138|4|1);RSPOS=100625156;dbSNPBuildID=129;SSR=0;SAO=0;VP=050000080001000002000100;GENEINFO=LRRC39:127495;WGT=1;VC=SNV;INT;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:0:0:0:0,0:31,31:0,0:0,0	76:11:0:0:0,0:56,63:1,1:8,13
1	102806295	.	T	C	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-202K23.1|lincRNA|NON_CODING|ENST00000447916|4|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:0:0:0:0,0:0,0:0,0:37,37	75:0:0:0:0,0:8,8:0,0:67,67
1	106334890	.	A	G	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:0:0:0:40,40:0,0:0,0:0,0	66:0:0:0:61,61:0,0:5,5:0,0
1	109450921	.	A	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||443|AKNAD1|protein_coding|CODING|ENST00000357393|1|1),INTRON(MODIFIER||||684|GPSM2|protein_coding|CODING|ENST00000264126|10|1),INTRON(MODIFIER||||684|GPSM2|protein_coding|CODING|ENST00000406462|11|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:2:0:0:27,32:0,0:0,0:0,0	67:3:0:0:57,63:1,2:6,6:0,0
1	109631646	.	G	A	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER||||74|TMEM167B|protein_coding|CODING|ENST00000338272||1),UPSTREAM(MODIFIER|||||TMEM167B|processed_transcript|CODING|ENST00000473828||1),UPSTREAM(MODIFIER|||||TMEM167B|processed_transcript|CODING|ENST00000479160||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	41:0:0:0:0,0:0,0:40,42:1,1	74:0:0:0:5,5:0,0:69,72:0,0
1	111296324	.	T	C	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:0:0:0:0,0:0,0:0,0:36,36	60:0:0:0:0,0:6,6:0,0:54,55
1	112001725	.	A	G	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||ATP5F1|processed_transcript|CODING|ENST00000464154||1),DOWNSTREAM(MODIFIER|||||ATP5F1|processed_transcript|CODING|ENST00000493119||1),INTRON(MODIFIER||||195|ATP5F1|protein_coding|CODING|ENST00000483994|3|1),INTRON(MODIFIER||||256|ATP5F1|protein_coding|CODING|ENST00000369722|5|1),INTRON(MODIFIER|||||ATP5F1|processed_transcript|CODING|ENST00000369721|4|1),INTRON(MODIFIER|||||ATP5F1|processed_transcript|CODING|ENST00000468818|4|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:0:0:0:32,32:0,0:0,0:0,0	79:1:0:0:70,70:0,0:8,9:0,0
1	113182459	.	G	A	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||286|CAPZA1|protein_coding|CODING|ENST00000263168|1|1),INTRON(MODIFIER|||||CAPZA1|processed_transcript|CODING|ENST00000476936|1|1),INTRON(MODIFIER|||||CAPZA1|processed_transcript|CODING|ENST00000485542|1|1),INTRON(MODIFIER|||||CAPZA1|processed_transcript|CODING|ENST00000498626|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	41:2:0:0:0,1:0,1:39,65:0,0	87:3:0:0:6,6:0,0:78,104:0,0
1	113511329	.	C	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||RP11-31F15.1|processed_transcript|NON_CODING|ENST00000416193||1),DOWNSTREAM(MODIFIER|||||RP11-31F15.1|processed_transcript|NON_CODING|ENST00000420168||1),EXON(MODIFIER|||||RP11-31F15.1|processed_transcript|NON_CODING|ENST00000428411|3|1),INTRON(MODIFIER|||||RP11-31F15.1|processed_transcript|NON_CODING|ENST00000435800|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:4:0:0:0,0:35,41:0,0:0,0	93:1:0:0:0,0:88,90:0,0:4,4
1	113958706	.	T	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1125|MAGI3|protein_coding|CODING|ENST00000369611|1|1),INTRON(MODIFIER||||1125|MAGI3|protein_coding|CODING|ENST00000369615|1|1),INTRON(MODIFIER||||1150|MAGI3|protein_coding|CODING|ENST00000369617|1|1),INTRON(MODIFIER||||1481|MAGI3|protein_coding|CODING|ENST00000307546|1|1),INTRON(MODIFIER|||||MAGI3|processed_transcript|CODING|ENST00000486456|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	43:1:0:0:0,0:0,0:1,1:41,48	122:1:0:0:0,0:0,0:16,18:105,123
1	114120744	.	G	A	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1125|MAGI3|protein_coding|CODING|ENST00000369611|2|1),INTRON(MODIFIER||||1125|MAGI3|protein_coding|CODING|ENST00000369615|2|1),INTRON(MODIFIER||||1150|MAGI3|protein_coding|CODING|ENST00000369617|2|1),INTRON(MODIFIER||||1481|MAGI3|protein_coding|CODING|ENST00000307546|2|1),INTRON(MODIFIER|||||MAGI3|processed_transcript|CODING|ENST00000486456|2|1),UPSTREAM(MODIFIER|||||MTND5P20|processed_pseudogene|NON_CODING|ENST00000448677||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:2:0:0:0,0:0,0:36,38:0,0	74:0:0:0:6,6:0,0:68,68:0,0
1	114603694	.	C	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	28:0:0:0:0,0:28,28:0,0:0,0	76:1:0:0:0,0:70,71:5,5:0,0
1	114747874	rs61669606	T	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||RP4-543J13.1|lincRNA|NON_CODING|ENST00000420156||1);RSPOS=114747874;dbSNPBuildID=129;SSR=0;SAO=0;VP=050000000001000002000100;WGT=1;VC=SNV;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:0:5:0:0,0:0,0:0,0:32,32	78:2:4:0:5,5:0,0:0,0:71,73
1	116094214	.	A	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:0:0:0:32,32:0,0:0,0:0,0	89:2:0:0:81,81:2,2:4,4:0,0
1	116659163	.	G	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||362|MAB21L3|protein_coding|CODING|ENST00000369500|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:0:0:0:0,0:0,0:33,33:0,0	68:0:0:0:0,0:0,0:60,60:8,8
1	116819507	.	T	A	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||U3|snoRNA|NON_CODING|ENST00000408113||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:0:0:0:0,0:1,1:0,0:37,37	56:0:0:0:5,5:0,0:1,1:50,51
1	117166050	.	G	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER||||1194|IGSF3|protein_coding|CODING|ENST00000369486|2|1),INTRON(MODIFIER||||1214|IGSF3|protein_coding|CODING|ENST00000318837|1|1),INTRON(MODIFIER||||1214|IGSF3|protein_coding|CODING|ENST00000369483|2|1),INTRON(MODIFIER|||||IGSF3|processed_transcript|CODING|ENST00000481589|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:0:0:0:0,0:0,0:38,38:0,0	82:0:0:0:4,4:0,0:78,89:0,0
1	117507832	.	G	A	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||879|PTGFRN|protein_coding|CODING|ENST00000393203|5|1),UPSTREAM(MODIFIER|||||PTGFRN|processed_transcript|CODING|ENST00000496699||1),UPSTREAM(MODIFIER|||||RNA5SP55|rRNA|NON_CODING|ENST00000516701||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:0:0:0:0,0:0,0:36,36:0,0	73:1:0:0:6,6:0,0:66,66:0,0
1	117842114	.	G	A	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-39H13.1|lincRNA|NON_CODING|ENST00000442182|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:0:0:0:0,0:0,0:36,36:0,0	83:0:0:0:4,4:0,0:79,80:0,0
1	118594700	rs138596941	A	G	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||SPAG17|processed_transcript|CODING|ENST00000477444||1),INTRON(MODIFIER||||2223|SPAG17|protein_coding|CODING|ENST00000336338|20|1);RSPOS=118594700;GMAF=0.0572;dbSNPBuildID=134;SSR=0;SAO=0;VP=050000080005000014000100;GENEINFO=SPAG17:200162;WGT=1;VC=SNV;INT;ASP;KGPhase1;KGPROD	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	15:0:0:0:15,16:0,0:0,0:0,0	44:1:0:0:33,35:0,0:9,12:1,1
1	120165510	.	T	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|Acg/Gcg|T486A|545|ZNF697|protein_coding|CODING|ENST00000421812|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:2:0:0:0,0:1,1:0,0:36,38	80:1:0:0:0,0:7,8:1,1:71,71
1	120554403	rs1690021	A	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=AA->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER||||2471|NOTCH2|protein_coding|CODING|ENST00000256646|2|1),INTRON(MODIFIER|||||NOTCH2|processed_transcript|CODING|ENST00000489731|1|1);RSPOS=120554403;RV;dbSNPBuildID=89;SSR=0;SAO=0;VP=050000080005040102000100;GENEINFO=NOTCH2:4853;WGT=1;VC=SNV;INT;ASP;VLD;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:1:0:0:36,36:0,1:0,1:0,0	60:0:0:0:55,56:0,0:5,9:0,0
1	120608796	.	C	T	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||2471|NOTCH2|protein_coding|CODING|ENST00000256646|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	41:0:4:0:2,2:39,39:0,0:0,0	88:1:4:0:2,2:78,79:0,0:7,7
1	121136001	.	A	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AC;SOMATIC;TQSS=2;TQSS_NT=2;EFF=DOWNSTREAM(MODIFIER|||||AL358175.1|processed_transcript|NON_CODING|ENST00000429055||1),INTRON(MODIFIER|||||AL358175.1|processed_transcript|NON_CODING|ENST00000437515|2|1),UPSTREAM(MODIFIER|||||AL592494.5|processed_transcript|NON_CODING|ENST00000417218||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	50:0:0:0:50,63:0,3:0,0:0,3	119:0:0:0:110,144:5,9:0,0:4,6
1	121370676	.	T	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->GT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	58:0:0:0:1,1:0,0:1,2:56,67	134:5:0:0:1,2:0,0:9,13:119,153
1	142572954	.	G	A	.	PASS	NT=ref;QSS=37;QSS_NT=37;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||AL583842.2|lincRNA|NON_CODING|ENST00000415979|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	86:0:0:0:0,0:0,0:86,96:0,0	187:1:0:0:11,14:0,0:174,200:1,1
1	142686836	.	C	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||SNX18P16|processed_pseudogene|NON_CODING|ENST00000417988||1),INTRON(MODIFIER|||||AL583842.3|processed_transcript|NON_CODING|ENST00000411746|2|1),INTRON(MODIFIER|||||AL583842.6|processed_transcript|NON_CODING|ENST00000369381|6|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	85:1:0:0:0,1:84,104:0,0:0,0	184:3:0:0:7,12:174,222:0,0:0,0
1	142687769	.	A	G	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=AA->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=DOWNSTREAM(MODIFIER|||||SNX18P16|processed_pseudogene|NON_CODING|ENST00000417988||1),INTRON(MODIFIER|||||AL583842.3|processed_transcript|NON_CODING|ENST00000411746|2|1),INTRON(MODIFIER|||||AL583842.6|processed_transcript|NON_CODING|ENST00000369381|6|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	54:0:0:0:54,56:0,0:0,1:0,0	110:0:0:0:103,116:0,0:7,10:0,0
1	142688592	rs201244506	G	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->CG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=EXON(MODIFIER|||||SNX18P16|processed_pseudogene|NON_CODING|ENST00000417988|1|1),INTRON(MODIFIER|||||AL583842.3|processed_transcript|NON_CODING|ENST00000411746|2|1),INTRON(MODIFIER|||||AL583842.6|processed_transcript|NON_CODING|ENST00000369381|6|1);RSPOS=142688592;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	68:1:0:0:0,0:0,1:67,82:0,0	163:5:0:0:0,0:12,14:146,166:0,0
1	142850968	.	T	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	66:0:0:0:0,0:0,0:1,2:65,76	141:1:0:0:0,0:0,0:8,14:132,147
1	143124629	.	T	C	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||BX571672.1|processed_transcript|NON_CODING|ENST00000428930|1|1),INTRON(MODIFIER|||||BX571672.1|processed_transcript|NON_CODING|ENST00000436680|1|1),INTRON(MODIFIER|||||BX571672.1|processed_transcript|NON_CODING|ENST00000438000|1|1),INTRON(MODIFIER|||||BX571672.1|processed_transcript|NON_CODING|ENST00000447407|1|1),INTRON(MODIFIER|||||BX571672.1|processed_transcript|NON_CODING|ENST00000454861|1|1),INTRON(MODIFIER|||||BX571672.2|lincRNA|NON_CODING|ENST00000422129|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	43:0:0:0:0,0:0,0:0,0:43,44	82:2:0:0:0,0:8,8:0,0:72,75
1	143124657	rs79613843	A	G	.	PASS	NT=ref;QSS=24;QSS_NT=24;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||BX571672.1|processed_transcript|NON_CODING|ENST00000428930|1|1),INTRON(MODIFIER|||||BX571672.1|processed_transcript|NON_CODING|ENST00000436680|1|1),INTRON(MODIFIER|||||BX571672.1|processed_transcript|NON_CODING|ENST00000438000|1|1),INTRON(MODIFIER|||||BX571672.1|processed_transcript|NON_CODING|ENST00000447407|1|1),INTRON(MODIFIER|||||BX571672.1|processed_transcript|NON_CODING|ENST00000454861|1|1),INTRON(MODIFIER|||||BX571672.2|lincRNA|NON_CODING|ENST00000422129|1|1);RSPOS=143124657;dbSNPBuildID=131;SSR=0;SAO=0;VP=050000000005040102000100;WGT=1;VC=SNV;ASP;VLD;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	45:0:0:0:44,45:1,1:0,0:0,0	81:1:0:0:69,70:0,0:11,12:0,0
1	143159460	.	A	G	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||BX571672.1|processed_transcript|NON_CODING|ENST00000454861||1),INTRON(MODIFIER|||||BX571672.1|processed_transcript|NON_CODING|ENST00000428930|1|1),INTRON(MODIFIER|||||BX571672.1|processed_transcript|NON_CODING|ENST00000436680|1|1),INTRON(MODIFIER|||||BX571672.1|processed_transcript|NON_CODING|ENST00000438000|1|1),INTRON(MODIFIER|||||BX571672.1|processed_transcript|NON_CODING|ENST00000447407|1|1),INTRON(MODIFIER|||||BX571672.2|lincRNA|NON_CODING|ENST00000422129|1|1),INTRON(MODIFIER|||||BX571672.4|lincRNA|NON_CODING|ENST00000424474|1|1),UPSTREAM(MODIFIER|||||MIR3118-2|miRNA|NON_CODING|ENST00000582397||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:0:0:0:37,38:0,0:0,0:0,0	77:3:0:0:66,69:0,0:8,11:0,1
1	143162767	rs199946445	G	A	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||BX571672.1|processed_transcript|NON_CODING|ENST00000454861||1),INTRON(MODIFIER|||||BX571672.1|processed_transcript|NON_CODING|ENST00000428930|1|1),INTRON(MODIFIER|||||BX571672.1|processed_transcript|NON_CODING|ENST00000436680|1|1),INTRON(MODIFIER|||||BX571672.1|processed_transcript|NON_CODING|ENST00000438000|1|1),INTRON(MODIFIER|||||BX571672.1|processed_transcript|NON_CODING|ENST00000447407|1|1),INTRON(MODIFIER|||||BX571672.2|lincRNA|NON_CODING|ENST00000422129|1|1),INTRON(MODIFIER|||||BX571672.4|lincRNA|NON_CODING|ENST00000424474|1|1),UPSTREAM(MODIFIER|||||MIR3118-2|miRNA|NON_CODING|ENST00000582397||1);RSPOS=143162767;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	48:0:0:0:0,0:0,0:48,60:0,0	104:2:0:0:7,17:0,0:95,118:0,0
1	143165956	rs112958241	C	G	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||MIR3118-2|miRNA|NON_CODING|ENST00000582397||1),INTRON(MODIFIER|||||BX571672.1|processed_transcript|NON_CODING|ENST00000428930|1|1),INTRON(MODIFIER|||||BX571672.1|processed_transcript|NON_CODING|ENST00000436680|1|1),INTRON(MODIFIER|||||BX571672.1|processed_transcript|NON_CODING|ENST00000438000|1|1),INTRON(MODIFIER|||||BX571672.1|processed_transcript|NON_CODING|ENST00000447407|1|1),INTRON(MODIFIER|||||BX571672.2|lincRNA|NON_CODING|ENST00000422129|1|1),INTRON(MODIFIER|||||BX571672.4|lincRNA|NON_CODING|ENST00000424474|1|1);RSPOS=143165956;dbSNPBuildID=132;SSR=0;SAO=0;VP=050000000001000102000100;WGT=1;VC=SNV;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	67:16:0:0:0,0:50,73:1,2:0,0	121:25:0:0:0,0:91,151:5,6:0,0
1	143168057	.	C	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||MIR3118-2|miRNA|NON_CODING|ENST00000582397||1),INTRON(MODIFIER|||||BX571672.1|processed_transcript|NON_CODING|ENST00000428930|1|1),INTRON(MODIFIER|||||BX571672.1|processed_transcript|NON_CODING|ENST00000436680|1|1),INTRON(MODIFIER|||||BX571672.1|processed_transcript|NON_CODING|ENST00000438000|1|1),INTRON(MODIFIER|||||BX571672.1|processed_transcript|NON_CODING|ENST00000447407|1|1),INTRON(MODIFIER|||||BX571672.2|lincRNA|NON_CODING|ENST00000422129|1|1),INTRON(MODIFIER|||||BX571672.4|lincRNA|NON_CODING|ENST00000424474|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	74:0:0:0:0,0:73,76:0,0:1,1	108:1:0:0:1,1:99,115:0,1:7,13
1	143179484	.	T	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||BX571672.2|lincRNA|NON_CODING|ENST00000437267||1),INTRON(MODIFIER|||||BX571672.1|processed_transcript|NON_CODING|ENST00000428930|1|1),INTRON(MODIFIER|||||BX571672.1|processed_transcript|NON_CODING|ENST00000436680|1|1),INTRON(MODIFIER|||||BX571672.1|processed_transcript|NON_CODING|ENST00000438000|1|1),INTRON(MODIFIER|||||BX571672.1|processed_transcript|NON_CODING|ENST00000447407|1|1),INTRON(MODIFIER|||||BX571672.2|lincRNA|NON_CODING|ENST00000422129|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	47:1:0:0:1,1:0,0:1,1:44,50	126:2:0:0:6,9:0,0:0,0:118,145
1	143180495	.	A	G	.	PASS	NT=ref;QSS=31;QSS_NT=31;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||BX571672.2|lincRNA|NON_CODING|ENST00000437267||1),INTRON(MODIFIER|||||BX571672.1|processed_transcript|NON_CODING|ENST00000428930|1|1),INTRON(MODIFIER|||||BX571672.1|processed_transcript|NON_CODING|ENST00000436680|1|1),INTRON(MODIFIER|||||BX571672.1|processed_transcript|NON_CODING|ENST00000438000|1|1),INTRON(MODIFIER|||||BX571672.1|processed_transcript|NON_CODING|ENST00000447407|1|1),INTRON(MODIFIER|||||BX571672.2|lincRNA|NON_CODING|ENST00000422129|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	66:1:0:0:64,75:0,0:0,0:1,1	143:5:0:0:125,154:0,1:13,15:0,0
1	143185174	.	G	A	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||BX571672.2|lincRNA|NON_CODING|ENST00000412204||1),DOWNSTREAM(MODIFIER|||||BX571672.2|lincRNA|NON_CODING|ENST00000413897||1),DOWNSTREAM(MODIFIER|||||BX571672.2|lincRNA|NON_CODING|ENST00000420598||1),DOWNSTREAM(MODIFIER|||||BX571672.2|lincRNA|NON_CODING|ENST00000447389||1),INTRON(MODIFIER|||||BX571672.1|processed_transcript|NON_CODING|ENST00000428930|1|1),INTRON(MODIFIER|||||BX571672.1|processed_transcript|NON_CODING|ENST00000436680|1|1),INTRON(MODIFIER|||||BX571672.1|processed_transcript|NON_CODING|ENST00000438000|1|1),INTRON(MODIFIER|||||BX571672.1|processed_transcript|NON_CODING|ENST00000447407|1|1),INTRON(MODIFIER|||||BX571672.2|lincRNA|NON_CODING|ENST00000422129|1|1),INTRON(MODIFIER|||||BX571672.2|lincRNA|NON_CODING|ENST00000437267|4|1),UPSTREAM(MODIFIER|||||BX571672.3|lincRNA|NON_CODING|ENST00000425124||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	62:0:0:0:1,1:0,1:61,66:0,0	126:3:0:0:9,12:0,0:114,127:0,0
1	143224325	.	C	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||BX571672.1|processed_transcript|NON_CODING|ENST00000428930|1|1),INTRON(MODIFIER|||||BX571672.1|processed_transcript|NON_CODING|ENST00000438000|2|1),INTRON(MODIFIER|||||BX571672.1|processed_transcript|NON_CODING|ENST00000447407|2|1),INTRON(MODIFIER|||||BX571672.5|processed_transcript|NON_CODING|ENST00000422716|5|1),INTRON(MODIFIER|||||BX571672.5|processed_transcript|NON_CODING|ENST00000429121|6|1),INTRON(MODIFIER|||||BX571672.5|processed_transcript|NON_CODING|ENST00000435585|1|1),INTRON(MODIFIER|||||BX571672.5|processed_transcript|NON_CODING|ENST00000437865|1|1),INTRON(MODIFIER|||||BX571672.5|processed_transcript|NON_CODING|ENST00000439302|6|1),INTRON(MODIFIER|||||BX571672.5|processed_transcript|NON_CODING|ENST00000456937|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:0:0:0:0,0:30,30:0,0:0,0	61:1:0:0:4,5:56,58:0,0:0,0
1	143276212	.	G	A	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=GG->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||BX571672.5|processed_transcript|NON_CODING|ENST00000416367||1),UPSTREAM(MODIFIER|||||BX571672.5|processed_transcript|NON_CODING|ENST00000439302||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	54:1:0:0:0,2:0,0:52,73:1,9	117:9:0:0:7,13:0,1:98,154:3,13
1	143286520	.	T	C	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:0:0:0:0,0:0,0:0,0:34,34	81:2:0:0:0,0:7,9:0,1:72,73
1	143367893	rs201186454	T	C	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||BX004987.3|lincRNA|NON_CODING|ENST00000424820||1),INTRON(MODIFIER|||||BX004987.3|lincRNA|NON_CODING|ENST00000411775|4|1),INTRON(MODIFIER|||||BX004987.3|lincRNA|NON_CODING|ENST00000430699|8|1),INTRON(MODIFIER|||||BX004987.3|lincRNA|NON_CODING|ENST00000431621|5|1),INTRON(MODIFIER|||||BX004987.3|lincRNA|NON_CODING|ENST00000442663|3|1),INTRON(MODIFIER|||||BX004987.3|lincRNA|NON_CODING|ENST00000444754|3|1),INTRON(MODIFIER|||||BX004987.3|lincRNA|NON_CODING|ENST00000446530|3|1),INTRON(MODIFIER|||||BX004987.4|processed_transcript|NON_CODING|ENST00000423249|1|1),INTRON(MODIFIER|||||BX004987.4|processed_transcript|NON_CODING|ENST00000424068|2|1),INTRON(MODIFIER|||||BX004987.4|processed_transcript|NON_CODING|ENST00000443548|2|1);RSPOS=143367893;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:0:0:0:0,0:0,0:0,0:39,46	153:3:0:0:0,1:9,10:0,0:141,150
1	143388824	rs201876299	G	A	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||BX004987.4|processed_transcript|NON_CODING|ENST00000423249|1|1),INTRON(MODIFIER|||||BX004987.4|processed_transcript|NON_CODING|ENST00000424068|2|1),INTRON(MODIFIER|||||BX004987.4|processed_transcript|NON_CODING|ENST00000432361|2|1),INTRON(MODIFIER|||||BX004987.4|processed_transcript|NON_CODING|ENST00000443548|2|1),INTRON(MODIFIER|||||BX004987.5|lincRNA|NON_CODING|ENST00000428624|2|1),UPSTREAM(MODIFIER|||||BX004987.5|lincRNA|NON_CODING|ENST00000412492||1),UPSTREAM(MODIFIER|||||BX004987.5|lincRNA|NON_CODING|ENST00000415543||1),UPSTREAM(MODIFIER|||||BX004987.5|lincRNA|NON_CODING|ENST00000421640||1),UPSTREAM(MODIFIER|||||BX004987.5|lincRNA|NON_CODING|ENST00000448665||1),UPSTREAM(MODIFIER|||||BX004987.5|lincRNA|NON_CODING|ENST00000448844||1),UPSTREAM(MODIFIER|||||BX004987.5|lincRNA|NON_CODING|ENST00000456460||1),UPSTREAM(MODIFIER|||||BX004987.5|lincRNA|NON_CODING|ENST00000458155||1);RSPOS=143388824;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	49:0:0:0:0,1:0,0:49,49:0,0	161:1:0:0:9,15:0,0:151,153:0,0
1	143388898	.	A	T	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||BX004987.4|processed_transcript|NON_CODING|ENST00000423249|1|1),INTRON(MODIFIER|||||BX004987.4|processed_transcript|NON_CODING|ENST00000424068|2|1),INTRON(MODIFIER|||||BX004987.4|processed_transcript|NON_CODING|ENST00000432361|2|1),INTRON(MODIFIER|||||BX004987.4|processed_transcript|NON_CODING|ENST00000443548|2|1),INTRON(MODIFIER|||||BX004987.5|lincRNA|NON_CODING|ENST00000428624|2|1),UPSTREAM(MODIFIER|||||BX004987.5|lincRNA|NON_CODING|ENST00000412492||1),UPSTREAM(MODIFIER|||||BX004987.5|lincRNA|NON_CODING|ENST00000415543||1),UPSTREAM(MODIFIER|||||BX004987.5|lincRNA|NON_CODING|ENST00000421640||1),UPSTREAM(MODIFIER|||||BX004987.5|lincRNA|NON_CODING|ENST00000448665||1),UPSTREAM(MODIFIER|||||BX004987.5|lincRNA|NON_CODING|ENST00000448844||1),UPSTREAM(MODIFIER|||||BX004987.5|lincRNA|NON_CODING|ENST00000456460||1),UPSTREAM(MODIFIER|||||BX004987.5|lincRNA|NON_CODING|ENST00000458155||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	59:1:0:0:58,60:0,0:0,0:0,1	155:1:0:0:145,148:0,0:0,1:9,15
1	143399925	rs202064374	C	G	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||BX004987.5|lincRNA|NON_CODING|ENST00000428624||1),DOWNSTREAM(MODIFIER|||||BX004987.5|lincRNA|NON_CODING|ENST00000431700||1),DOWNSTREAM(MODIFIER|||||BX004987.5|lincRNA|NON_CODING|ENST00000448665||1),DOWNSTREAM(MODIFIER|||||BX004987.5|lincRNA|NON_CODING|ENST00000456460||1),DOWNSTREAM(MODIFIER|||||BX004987.5|lincRNA|NON_CODING|ENST00000458155||1),INTRON(MODIFIER|||||BX004987.4|processed_transcript|NON_CODING|ENST00000423249|1|1),INTRON(MODIFIER|||||BX004987.4|processed_transcript|NON_CODING|ENST00000424068|2|1),INTRON(MODIFIER|||||BX004987.4|processed_transcript|NON_CODING|ENST00000432361|2|1),INTRON(MODIFIER|||||BX004987.4|processed_transcript|NON_CODING|ENST00000443548|2|1),INTRON(MODIFIER|||||BX004987.4|processed_transcript|NON_CODING|ENST00000443766|5|1),INTRON(MODIFIER|||||BX004987.5|lincRNA|NON_CODING|ENST00000433980|2|1),INTRON(MODIFIER|||||BX004987.5|lincRNA|NON_CODING|ENST00000448844|6|1);RSPOS=143399925;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	70:1:0:0:0,0:68,75:1,4:0,0	127:0:0:0:0,0:119,136:8,15:0,0
1	143399976	rs200950131	G	A	.	PASS	NT=ref;QSS=28;QSS_NT=28;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||BX004987.5|lincRNA|NON_CODING|ENST00000428624||1),DOWNSTREAM(MODIFIER|||||BX004987.5|lincRNA|NON_CODING|ENST00000431700||1),DOWNSTREAM(MODIFIER|||||BX004987.5|lincRNA|NON_CODING|ENST00000448665||1),DOWNSTREAM(MODIFIER|||||BX004987.5|lincRNA|NON_CODING|ENST00000456460||1),DOWNSTREAM(MODIFIER|||||BX004987.5|lincRNA|NON_CODING|ENST00000458155||1),INTRON(MODIFIER|||||BX004987.4|processed_transcript|NON_CODING|ENST00000423249|1|1),INTRON(MODIFIER|||||BX004987.4|processed_transcript|NON_CODING|ENST00000424068|2|1),INTRON(MODIFIER|||||BX004987.4|processed_transcript|NON_CODING|ENST00000432361|2|1),INTRON(MODIFIER|||||BX004987.4|processed_transcript|NON_CODING|ENST00000443548|2|1),INTRON(MODIFIER|||||BX004987.4|processed_transcript|NON_CODING|ENST00000443766|5|1),INTRON(MODIFIER|||||BX004987.5|lincRNA|NON_CODING|ENST00000433980|2|1),INTRON(MODIFIER|||||BX004987.5|lincRNA|NON_CODING|ENST00000448844|6|1);RSPOS=143399976;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	56:0:0:0:0,2:0,0:56,68:0,0	134:3:0:0:8,20:0,0:123,145:0,0
1	143479565	.	G	C	.	PASS	NT=ref;QSS=24;QSS_NT=24;SGT=GG->CG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	80:2:0:0:0,0:0,2:77,86:1,1	186:1:0:0:0,0:10,12:175,187:0,0
1	143481446	rs71248669	C	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=143481446;dbSNPBuildID=130;SSR=0;SAO=0;VP=050100000009000102000100;WGT=1;VC=SNV;SLO;CFL;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	59:0:0:0:1,1:58,60:0,0:0,1	156:0:0:0:1,1:148,153:0,0:7,8
1	143489957	rs147031090	T	G	.	PASS	NT=ref;QSS=23;QSS_NT=23;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=143489957;dbSNPBuildID=134;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	90:4:0:0:0,0:0,0:1,1:85,102	166:5:0:0:0,0:0,0:11,16:150,189
1	143490912	.	C	T	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	44:1:0:0:0,1:43,48:0,0:0,1	152:0:0:0:0,0:143,149:0,0:9,15
1	143513877	rs116548174	A	G	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=AA->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER|||||BX004987.6|lincRNA|NON_CODING|ENST00000429884|2|1);RSPOS=143513877;dbSNPBuildID=134;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	54:1:0:0:53,54:0,0:0,1:0,0	116:1:0:0:108,109:0,0:7,8:0,0
1	143515663	rs113582440	G	A	.	PASS	NT=ref;QSS=24;QSS_NT=24;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||BX004987.6|lincRNA|NON_CODING|ENST00000429884|2|1);RSPOS=143515663;dbSNPBuildID=132;SSR=0;SAO=0;VP=050100000001000102000100;WGT=1;VC=SNV;SLO;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	50:2:0:0:0,1:0,0:48,52:0,0	105:1:0:0:12,28:0,0:92,98:0,1
1	143516360	.	G	A	.	PASS	NT=ref;QSS=40;QSS_NT=40;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||BX004987.6|lincRNA|NON_CODING|ENST00000429884|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	82:0:0:0:0,0:0,0:82,93:0,0	193:0:0:0:8,8:0,0:184,215:1,1
1	143526506	rs144717834	C	T	.	PASS	NT=ref;QSS=23;QSS_NT=23;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||BX004987.7|lincRNA|NON_CODING|ENST00000418607||1),DOWNSTREAM(MODIFIER|||||BX004987.7|lincRNA|NON_CODING|ENST00000443054||1),INTERGENIC(MODIFIER||||||||||1);RSPOS=143526506;dbSNPBuildID=134;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	70:6:0:0:0,0:64,80:0,0:0,1	151:4:0:0:0,0:138,169:0,0:9,12
1	143532408	rs201202576	G	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||BX004987.7|lincRNA|NON_CODING|ENST00000418607|1|1),UPSTREAM(MODIFIER|||||BX004987.7|lincRNA|NON_CODING|ENST00000443054||1);RSPOS=143532408;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	49:1:0:0:0,1:0,0:48,55:0,0	85:2:0:0:6,11:0,0:77,92:0,1
1	143534975	.	C	T	.	PASS	NT=ref;QSS=36;QSS_NT=36;SGT=CC->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||BX004987.7|lincRNA|NON_CODING|ENST00000418607||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	82:2:0:0:0,0:80,89:0,0:0,1	167:1:0:0:0,0:156,179:0,0:10,14
1	143728824	rs200208818	T	G	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||BX284650.1|processed_transcript|NON_CODING|ENST00000445753|1|1);RSPOS=143728824;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000080005000002000100;WGT=1;VC=SNV;INT;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	54:1:0:0:0,0:0,0:1,1:52,54	135:0:0:0:0,0:0,0:17,19:118,123
1	144190355	.	G	C	.	PASS	NT=ref;QSS=39;QSS_NT=39;SGT=GG->CG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER||||268|RP3-377D14.1|protein_coding|CODING|ENST00000356801|8|1),INTRON(MODIFIER||||84|RP3-377D14.1|protein_coding|CODING|ENST00000369372|4|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	89:0:11:0:0,0:0,6:89,141:0,0	248:2:38:0:0,0:15,43:231,377:0,0
1	144453648	.	T	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||AL592284.1|antisense|NON_CODING|ENST00000430014||1),DOWNSTREAM(MODIFIER|||||AL592284.1|antisense|NON_CODING|ENST00000437785||1),DOWNSTREAM(MODIFIER|||||AL592284.1|antisense|NON_CODING|ENST00000443242||1),DOWNSTREAM(MODIFIER|||||AL592284.1|antisense|NON_CODING|ENST00000444499||1),DOWNSTREAM(MODIFIER|||||AL592284.1|antisense|NON_CODING|ENST00000454100||1),INTRON(MODIFIER||||268|AL592284.2|protein_coding|CODING|ENST00000538264|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	22:0:0:0:0,0:0,0:0,0:22,25	50:0:0:0:0,0:7,10:0,0:43,47
1	144453671	.	G	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=DOWNSTREAM(MODIFIER|||||AL592284.1|antisense|NON_CODING|ENST00000430014||1),DOWNSTREAM(MODIFIER|||||AL592284.1|antisense|NON_CODING|ENST00000437785||1),DOWNSTREAM(MODIFIER|||||AL592284.1|antisense|NON_CODING|ENST00000443242||1),DOWNSTREAM(MODIFIER|||||AL592284.1|antisense|NON_CODING|ENST00000444499||1),DOWNSTREAM(MODIFIER|||||AL592284.1|antisense|NON_CODING|ENST00000454100||1),INTRON(MODIFIER||||268|AL592284.2|protein_coding|CODING|ENST00000538264|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:0:0:0:0,1:0,0:30,33:0,0	65:0:0:0:10,13:0,0:55,60:0,0
1	144559341	rs138397787	T	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=144559341;dbSNPBuildID=134;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:0:0:0:0,0:0,0:0,0:33,37	66:1:0:0:7,7:0,0:0,0:58,67
1	145279603	.	A	G	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||230|NOTCH2NL|protein_coding|CODING|ENST00000344859|3|1),INTRON(MODIFIER||||236|NOTCH2NL|protein_coding|CODING|ENST00000362074|3|1),INTRON(MODIFIER||||236|NOTCH2NL|protein_coding|CODING|ENST00000369340|4|1),INTRON(MODIFIER|||||RP11-458D21.5|nonsense_mediated_decay|NON_CODING|ENST00000468030|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:0:0:0:38,41:0,0:0,0:0,0	133:2:0:0:112,119:0,0:18,20:1,1
1	146475061	.	A	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER|||||RP4-704D21.2|lincRNA|NON_CODING|ENST00000425109|1|1),UPSTREAM(MODIFIER|||||RP4-704D21.2|lincRNA|NON_CODING|ENST00000455718||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	54:1:0:0:53,55:0,0:0,1:0,0	98:0:0:0:92,105:0,0:6,10:0,0
1	147033613	.	T	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1426|BCL9|protein_coding|CODING|ENST00000234739|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:1:0:0:0,0:0,0:1,1:31,32	84:1:0:0:2,2:5,5:0,1:76,76
1	147373267	.	C	T	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER||||433|GJA8|protein_coding|CODING|ENST00000240986||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:1:0:0:0,0:38,39:0,0:0,0	87:1:0:0:0,0:80,81:0,0:6,7
1	148209361	rs144480313	C	A	.	PASS	NT=ref;QSS=36;QSS_NT=36;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=148209361;dbSNPBuildID=134;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	74:1:0:0:0,0:73,78:0,1:0,0	210:1:0:0:16,19:193,205:0,0:0,0
1	148675256	.	C	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	82:1:0:0:0,0:80,88:0,0:1,3	241:1:0:0:0,0:229,257:1,1:10,13
1	148681566	.	C	G	.	PASS	NT=ref;QSS=34;QSS_NT=34;SGT=CC->CG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	91:4:0:0:1,1:86,111:0,0:0,0	226:5:0:0:3,6:210,258:8,10:0,0
1	148682528	.	A	T	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	42:1:0:0:41,47:0,0:0,0:0,0	89:4:0:0:78,93:0,0:0,0:7,8
1	148852874	.	C	T	.	PASS	NT=ref;QSS=24;QSS_NT=24;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||RP11-763B22.7|processed_pseudogene|NON_CODING|ENST00000444165||1),INTRON(MODIFIER|||||RP11-763B22.6|lincRNA|NON_CODING|ENST00000456469|1|1),UPSTREAM(MODIFIER|||||RP11-763B22.9|unprocessed_pseudogene|NON_CODING|ENST00000444424||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	51:3:0:0:0,0:48,81:0,2:0,1	133:8:0:0:0,0:116,175:1,5:8,12
1	148854932	.	G	T	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=GG->GT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=DOWNSTREAM(MODIFIER|||||RP11-763B22.6|lincRNA|NON_CODING|ENST00000456469||1),INTRON(MODIFIER|||||RP11-763B22.9|unprocessed_pseudogene|NON_CODING|ENST00000444424|1|1),UPSTREAM(MODIFIER|||||RP11-763B22.7|processed_pseudogene|NON_CODING|ENST00000444165||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	60:8:3:0:0,0:0,0:52,85:0,3	104:13:2:0:0,1:0,0:85,138:6,13
1	149016483	.	A	G	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	96:0:0:0:94,117:0,0:2,2:0,0	242:1:0:0:225,265:0,0:16,16:0,0
1	149016529	.	G	A	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	86:2:0:0:1,1:0,0:83,105:0,0	214:2:0:0:15,19:1,1:196,231:0,0
1	149025566	.	G	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	71:0:0:0:0,1:0,0:70,83:1,1	170:1:0:0:0,1:0,0:158,190:11,13
1	149025769	.	A	C	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:0:0:0:35,39:0,0:0,0:0,0	86:0:0:0:79,94:6,7:0,0:1,1
1	149029789	.	C	G	.	PASS	NT=ref;QSS=35;QSS_NT=35;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	77:0:0:0:0,0:77,79:0,0:0,0	160:0:0:0:0,0:152,153:8,10:0,0
1	149659141	rs146622947	C	T	.	PASS	NT=ref;QSS=25;QSS_NT=25;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=149659141;dbSNPBuildID=134;SSR=0;SAO=0;VP=050000080005000002000100;GENEINFO=FAM91A2:57234;WGT=1;VC=SNV;INT;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	61:1:0:0:0,0:60,62:0,0:0,0	153:0:0:0:0,0:144,149:0,0:9,14
1	149684381	rs4992867	C	G	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||AL358813.1|pseudogene|NON_CODING|ENST00000359348||1);RSPOS=149684381;dbSNPBuildID=113;SSR=1;SAO=0;VP=050000000005000002000140;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	55:0:0:0:0,0:55,59:0,0:0,0	115:0:0:0:0,0:108,112:7,9:0,0
1	149700667	.	C	T	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||RP11-353N4.5|lincRNA|NON_CODING|ENST00000432978||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:0:0:0:0,0:39,39:0,0:0,0	108:2:0:0:0,0:95,100:0,0:11,13
1	149920012	.	A	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||426|OTUD7B|protein_coding|CODING|ENST00000417191|10|1),INTRON(MODIFIER||||843|OTUD7B|protein_coding|CODING|ENST00000369135|10|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:0:0:0:28,28:1,1:1,1:0,0	79:0:0:0:73,73:0,0:0,0:6,6
1	150384320	.	G	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1435|RPRD2|protein_coding|CODING|ENST00000401000|1|1),INTRON(MODIFIER||||1461|RPRD2|protein_coding|CODING|ENST00000369068|1|1),INTRON(MODIFIER||||152|RPRD2|protein_coding|CODING|ENST00000369067|1|1),INTRON(MODIFIER||||934|RPRD2|protein_coding|CODING|ENST00000539519|1|1),INTRON(MODIFIER|||||RPRD2|processed_transcript|CODING|ENST00000492220|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:3:0:0:0,0:0,0:29,32:0,0	91:12:0:0:1,4:6,6:71,82:1,1
1	150384321	.	G	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1435|RPRD2|protein_coding|CODING|ENST00000401000|1|1),INTRON(MODIFIER||||1461|RPRD2|protein_coding|CODING|ENST00000369068|1|1),INTRON(MODIFIER||||152|RPRD2|protein_coding|CODING|ENST00000369067|1|1),INTRON(MODIFIER||||934|RPRD2|protein_coding|CODING|ENST00000539519|1|1),INTRON(MODIFIER|||||RPRD2|processed_transcript|CODING|ENST00000492220|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:3:0:0:0,0:0,0:29,32:0,0	92:12:0:0:6,7:0,1:74,86:0,0
1	150513866	.	T	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:0:0:0:0,0:0,0:0,0:37,38	74:2:0:0:0,1:6,6:2,2:64,67
1	150544297	.	G	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||350|MCL1|protein_coding|CODING|ENST00000369026||1),INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||Metazoa_SRP|misc_RNA|NON_CODING|ENST00000580341||1),UPSTREAM(MODIFIER|||||Metazoa_SRP|misc_RNA|NON_CODING|ENST00000581811||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:6:0:0:0,0:0,0:29,37:0,0	82:1:0:0:0,0:6,6:75,76:0,0
1	150921372	.	T	G	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||249|SETDB1|protein_coding|CODING|ENST00000368963||1),DOWNSTREAM(MODIFIER||||397|SETDB1|protein_coding|CODING|ENST00000368962||1),INTRON(MODIFIER||||1258|SETDB1|protein_coding|CODING|ENST00000498193|10|1),INTRON(MODIFIER||||1290|SETDB1|protein_coding|CODING|ENST00000368969|10|1),INTRON(MODIFIER||||1291|SETDB1|protein_coding|CODING|ENST00000271640|10|1),INTRON(MODIFIER||||635|SETDB1|protein_coding|CODING|ENST00000534805|10|1),INTRON(MODIFIER|||||SETDB1|processed_transcript|CODING|ENST00000459773|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:0:0:0:0,0:0,0:0,0:37,37	69:1:0:0:0,0:0,0:5,6:63,65
1	152323924	.	A	C	.	PASS	NT=ref;QSS=24;QSS_NT=24;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||FLG-AS1|antisense|NON_CODING|ENST00000392688|6|1),INTRON(MODIFIER|||||FLG-AS1|antisense|NON_CODING|ENST00000445097|2|1),NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|gTg/gGg|V2113G|2391|FLG2|protein_coding|CODING|ENST00000388718|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	47:2:0:0:45,47:0,0:0,1:0,0	81:3:0:0:68,71:10,13:0,0:0,0
1	153274088	.	T	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||341|PGLYRP3|protein_coding|CODING|ENST00000290722|5|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:1:0:0:0,0:0,0:0,0:28,29	79:1:0:0:0,0:5,5:0,0:73,75
1	154523623	rs181794711	C	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||351|TDRD10|protein_coding|CODING|ENST00000368482||1),DOWNSTREAM(MODIFIER||||366|TDRD10|protein_coding|CODING|ENST00000368480||1),DOWNSTREAM(MODIFIER|||||TDRD10|processed_transcript|CODING|ENST00000468714||1),DOWNSTREAM(MODIFIER|||||TDRD10|processed_transcript|CODING|ENST00000479937||1),DOWNSTREAM(MODIFIER|||||UBE2Q1|processed_transcript|CODING|ENST00000474181||1),DOWNSTREAM(MODIFIER|||||UBE2Q1|processed_transcript|CODING|ENST00000476612||1),DOWNSTREAM(MODIFIER|||||UBE2Q1|processed_transcript|CODING|ENST00000483639||1),DOWNSTREAM(MODIFIER|||||UBE2Q1|processed_transcript|CODING|ENST00000497453||1),INTRON(MODIFIER||||422|UBE2Q1|protein_coding|CODING|ENST00000292211|11|1),INTRON(MODIFIER|||||UBE2Q1|processed_transcript|CODING|ENST00000467683|3|1),INTRON(MODIFIER|||||UBE2Q1|processed_transcript|CODING|ENST00000491572|2|1),UPSTREAM(MODIFIER|||||UBE2Q1-AS1|antisense|NON_CODING|ENST00000441613||1);RSPOS=154523623;GMAF=0.0005;dbSNPBuildID=135;SSR=0;SAO=0;VP=050000080005000014000100;GENEINFO=UBE2Q1:55585;WGT=1;VC=SNV;INT;ASP;KGPhase1;KGPROD	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:0:0:0:0,0:29,29:0,0:0,0	67:1:0:0:0,0:59,61:0,0:7,7
1	155199879	.	C	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||423|GBA|protein_coding|CODING|ENST00000536770||1),DOWNSTREAM(MODIFIER||||449|GBA|protein_coding|CODING|ENST00000428024||1),DOWNSTREAM(MODIFIER||||487|GBA|protein_coding|CODING|ENST00000427500||1),DOWNSTREAM(MODIFIER||||536|GBA|protein_coding|CODING|ENST00000327247||1),DOWNSTREAM(MODIFIER||||536|GBA|protein_coding|CODING|ENST00000368373||1),DOWNSTREAM(MODIFIER|||||GBA|processed_transcript|CODING|ENST00000464536||1),DOWNSTREAM(MODIFIER|||||GBA|processed_transcript|CODING|ENST00000478472||1),DOWNSTREAM(MODIFIER|||||GBA|processed_transcript|CODING|ENST00000480140||1),DOWNSTREAM(MODIFIER|||||GBA|processed_transcript|CODING|ENST00000484489||1),INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||GBAP1|processed_transcript|NON_CODING|ENST00000368374||1),UPSTREAM(MODIFIER|||||GBAP1|unprocessed_pseudogene|NON_CODING|ENST00000313929||1),UPSTREAM(MODIFIER|||||MTX1P1|unprocessed_pseudogene|NON_CODING|ENST00000440904||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:1:0:0:1,1:36,36:0,1:0,0	71:0:0:0:0,0:65,68:0,0:6,6
1	155724948	.	A	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||GON4L|retained_intron|CODING|ENST00000483032||1),DOWNSTREAM(MODIFIER|||||RP11-243J18.3|unprocessed_pseudogene|NON_CODING|ENST00000538914||1),INTRON(MODIFIER||||2240|GON4L|protein_coding|CODING|ENST00000271883|27|1),INTRON(MODIFIER||||2240|GON4L|protein_coding|CODING|ENST00000437809|27|1),INTRON(MODIFIER||||2241|GON4L|protein_coding|CODING|ENST00000368331|27|1),INTRON(MODIFIER|||||GON4L|retained_intron|CODING|ENST00000460075|3|1),UPSTREAM(MODIFIER|||||GON4L|retained_intron|CODING|ENST00000473267||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	27:1:0:0:25,26:0,0:1,1:0,0	65:6:0:0:50,52:8,11:1,1:0,1
1	156656157	.	G	A	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||RP11-66D17.3|lincRNA|NON_CODING|ENST00000441272||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:0:0:0:0,0:0,0:34,34:0,0	65:1:0:0:4,6:0,0:60,61:0,0
1	156764945	.	T	G	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||PRCC|processed_transcript|CODING|ENST00000491853||1),DOWNSTREAM(MODIFIER|||||PRCC|retained_intron|CODING|ENST00000459707||1),INTRON(MODIFIER||||198|PRCC|protein_coding|CODING|ENST00000526188|2|1),INTRON(MODIFIER||||459|PRCC|protein_coding|CODING|ENST00000353233|4|1),INTRON(MODIFIER||||491|PRCC|protein_coding|CODING|ENST00000271526|5|1),UPSTREAM(MODIFIER|||||PRCC|retained_intron|CODING|ENST00000469071||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	43:0:0:0:0,0:0,0:0,0:43,43	70:1:0:0:0,0:0,0:5,5:64,64
1	159236068	.	C	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:0:0:0:0,0:29,29:0,0:0,0	86:1:0:0:0,0:78,79:0,0:7,7
1	160662916	rs201025575	A	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=AA->AT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER||||169|CD48|protein_coding|CODING|ENST00000368045|1|1),INTRON(MODIFIER||||243|CD48|protein_coding|CODING|ENST00000368046|1|1),UPSTREAM(MODIFIER|||||AL121985.1|pseudogene|NON_CODING|ENST00000452210||1);RSPOS=160662916;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000080005000002000100;WGT=1;VC=SNV;INT;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:0:0:0:39,44:0,0:0,0:0,1	96:0:0:0:90,94:0,0:0,0:6,8
1	160663464	rs202242496	C	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||169|CD48|protein_coding|CODING|ENST00000368045|1|1),INTRON(MODIFIER||||243|CD48|protein_coding|CODING|ENST00000368046|1|1),UPSTREAM(MODIFIER|||||AL121985.1|pseudogene|NON_CODING|ENST00000452210||1);RSPOS=160663464;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000080005000002000100;WGT=1;VC=SNV;INT;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:1:0:0:1,1:34,36:0,0:0,0	91:2:0:0:0,0:83,87:0,0:6,8
1	160961681	.	A	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||299|F11R|protein_coding|CODING|ENST00000368026||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	27:0:0:0:27,29:0,0:0,0:0,0	51:1:0:0:44,44:0,0:6,7:0,0
1	160961687	.	A	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||299|F11R|protein_coding|CODING|ENST00000368026||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	28:0:0:0:28,30:0,0:0,0:0,0	54:0:0:0:47,47:0,0:7,7:0,0
1	162038702	.	A	C	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER||||501|NOS1AP|protein_coding|CODING|ENST00000530878||1),UPSTREAM(MODIFIER||||506|NOS1AP|protein_coding|CODING|ENST00000361897||1),UPSTREAM(MODIFIER|||||NOS1AP|nonsense_mediated_decay|CODING|ENST00000430120||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:0:0:0:37,37:0,0:0,0:0,0	74:1:0:0:67,68:6,6:0,0:0,0
1	162444266	.	C	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:1:0:0:0,0:32,34:0,0:0,0	89:5:0:0:0,0:78,83:1,2:5,6
1	163007340	rs111256025	A	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=163007340;GMAF=0.0449;dbSNPBuildID=132;SSR=0;SAO=0;VP=050000000005000116000100;WGT=1;VC=SNV;ASP;GNO;KGPhase1;KGPROD;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:0:0:0:30,31:0,0:0,0:0,0	72:3:0:0:65,72:0,0:4,4:0,0
1	163028220	.	A	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:0:0:0:37,37:1,1:0,0:0,0	80:1:0:0:75,77:4,4:0,0:0,0
1	163429268	.	T	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:2:0:0:0,0:0,0:0,0:32,34	74:0:0:0:0,0:6,6:0,0:68,68
1	163578385	.	C	T	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:3:0:0:0,0:36,39:0,0:0,0	95:0:0:0:0,0:87,87:0,0:8,8
1	163606595	.	G	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:0:0:0:0,0:0,0:34,34:0,0	78:0:0:0:0,0:0,0:72,72:6,6
1	163662136	.	C	A	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:1:0:0:0,0:39,40:0,0:0,0	74:0:0:0:5,5:69,69:0,0:0,0
1	164376021	.	A	C	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:1:0:0:32,33:0,0:1,1:0,0	72:2:0:0:62,64:8,8:0,0:0,0
1	164796239	.	T	C	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||301|PBX1|protein_coding|CODING|ENST00000540246|6|1),INTRON(MODIFIER||||325|PBX1|protein_coding|CODING|ENST00000468104|8|1),INTRON(MODIFIER||||325|PBX1|protein_coding|CODING|ENST00000560469|7|1),INTRON(MODIFIER||||325|PBX1|protein_coding|CODING|ENST00000560641|8|1),INTRON(MODIFIER||||339|PBX1|protein_coding|CODING|ENST00000559240|6|1),INTRON(MODIFIER||||347|PBX1|protein_coding|CODING|ENST00000367897|7|1),INTRON(MODIFIER||||370|PBX1|protein_coding|CODING|ENST00000496120|7|1),INTRON(MODIFIER||||420|PBX1|protein_coding|CODING|ENST00000540236|8|1),INTRON(MODIFIER||||430|PBX1|protein_coding|CODING|ENST00000420696|8|1),INTRON(MODIFIER|||||PBX1|processed_transcript|CODING|ENST00000465089|2|1),INTRON(MODIFIER|||||PBX1|processed_transcript|CODING|ENST00000558796|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:1:0:0:0,0:0,0:0,0:36,37	93:0:0:0:0,0:7,7:0,0:86,86
1	165400680	.	T	C	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||463|RXRG|protein_coding|CODING|ENST00000359842|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:0:0:0:0,0:0,0:0,0:37,37	71:0:0:0:0,0:6,6:1,1:64,64
1	165666131	.	G	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||424|ALDH9A1|protein_coding|CODING|ENST00000538148|1|1),INTRON(MODIFIER||||518|ALDH9A1|protein_coding|CODING|ENST00000354775|1|1),INTRON(MODIFIER|||||ALDH9A1|processed_transcript|CODING|ENST00000461664|1|1),INTRON(MODIFIER|||||ALDH9A1|retained_intron|CODING|ENST00000471457|1|1),UPSTREAM(MODIFIER|||||RP11-466F5.5|processed_transcript|NON_CODING|ENST00000400982||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:1:0:0:0,0:0,0:29,30:0,0	87:1:0:0:5,5:0,0:81,82:0,0
1	165906916	.	G	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	28:0:0:0:0,0:0,0:28,28:0,0	72:1:0:0:7,7:0,0:64,65:0,0
1	166036197	.	G	T	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||261|FAM78B|protein_coding|CODING|ENST00000338353||1),DOWNSTREAM(MODIFIER||||261|FAM78B|protein_coding|CODING|ENST00000354422||1),INTRON(MODIFIER|||||FAM78B|nonsense_mediated_decay|CODING|ENST00000456900|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	42:1:0:0:0,0:0,0:41,42:0,0	72:4:0:0:0,0:0,0:61,65:7,7
1	168468306	.	T	C	.	PASS	NT=ref;QSS=27;QSS_NT=27;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||RP5-968D22.3|lincRNA|NON_CODING|ENST00000422253||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:0:0:0:0,0:0,0:0,0:40,41	58:1:0:0:0,0:10,10:0,0:47,48
1	168824943	.	A	G	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	41:2:0:0:39,41:0,0:0,0:0,0	84:0:0:0:76,76:1,1:7,7:0,0
1	170394196	.	G	T	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	41:1:0:0:0,0:0,0:40,41:0,0	77:0:0:0:0,0:0,0:71,72:6,6
1	170571152	.	G	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP1-79C4.1|lincRNA|NON_CODING|ENST00000413005|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	28:0:0:0:0,0:0,0:28,28:0,0	92:1:0:0:0,0:11,11:80,81:0,0
1	171184622	.	C	T	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||471|FMO2|protein_coding|CODING|ENST00000209929||1),DOWNSTREAM(MODIFIER||||471|FMO2|protein_coding|CODING|ENST00000441535||1),INTRON(MODIFIER|||||RP1-127D3.4|antisense|NON_CODING|ENST00000422841|1|1),INTRON(MODIFIER|||||RP1-127D3.4|antisense|NON_CODING|ENST00000445290|1|1),INTRON(MODIFIER|||||RP1-127D3.4|antisense|NON_CODING|ENST00000445909|1|1),INTRON(MODIFIER|||||RP1-45C12.1|antisense|NON_CODING|ENST00000455124|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:0:0:0:0,0:40,40:0,0:0,0	68:1:0:0:0,0:60,60:0,0:7,8
1	171806368	.	C	A	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER||||555|DNM3|protein_coding|CODING|ENST00000367733||1),UPSTREAM(MODIFIER||||639|DNM3|protein_coding|CODING|ENST00000520906||1),UPSTREAM(MODIFIER||||859|DNM3|protein_coding|CODING|ENST00000367731||1),UPSTREAM(MODIFIER||||863|DNM3|protein_coding|CODING|ENST00000358155||1),UPSTREAM(MODIFIER||||869|DNM3|protein_coding|CODING|ENST00000355305||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	42:0:0:0:0,0:41,41:1,1:0,0	91:1:0:0:10,10:80,81:0,0:0,0
1	174178833	.	A	G	.	PASS	NT=ref;QSS=32;QSS_NT=32;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||252|RABGAP1L|protein_coding|CODING|ENST00000367689|1|1),INTRON(MODIFIER||||581|RABGAP1L|protein_coding|CODING|ENST00000457696|1|1),INTRON(MODIFIER||||605|RABGAP1L|protein_coding|CODING|ENST00000357444|1|1),INTRON(MODIFIER||||815|RABGAP1L|protein_coding|CODING|ENST00000251507|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:0:0:0:33,33:0,0:0,0:0,0	65:0:0:0:51,51:0,0:14,14:0,0
1	175209639	.	A	G	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:4:0:0:31,40:0,0:0,0:0,0	82:8:0:0:67,82:0,0:7,9:0,0
1	175847652	.	C	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-222A5.1|lincRNA|NON_CODING|ENST00000457217|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:1:0:0:0,0:33,34:0,0:0,0	73:2:0:0:0,0:63,64:0,1:8,8
1	176371914	rs142413902	A	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=176371914;GMAF=0.0018;dbSNPBuildID=134;SSR=0;SAO=0;VP=050000000005000014000100;WGT=1;VC=SNV;ASP;KGPhase1;KGPROD	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:0:0:0:30,30:0,0:0,0:0,0	82:2:0:0:71,74:1,1:8,8:0,0
1	176585903	.	G	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=EXON(MODIFIER|||||PTP4A1P7|processed_pseudogene|NON_CODING|ENST00000423476|1|1),EXON(MODIFIER|||||PTP4A1P7|retrotransposed|NON_CODING|ENST00000422603|1|1),INTRON(MODIFIER||||1791|PAPPA2|protein_coding|CODING|ENST00000367662|3|1),INTRON(MODIFIER||||827|PAPPA2|protein_coding|CODING|ENST00000367661|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:1:0:0:0,0:0,0:31,32:0,0	77:0:0:0:8,8:0,0:69,69:0,0
1	176650271	.	T	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1791|PAPPA2|protein_coding|CODING|ENST00000367662|4|1),INTRON(MODIFIER||||827|PAPPA2|protein_coding|CODING|ENST00000367661|4|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:1:0:0:0,0:0,0:1,2:29,29	62:0:0:0:0,0:4,4:1,1:57,57
1	177302385	.	A	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:0:0:0:33,33:0,0:0,0:0,0	70:1:0:0:64,64:1,1:0,0:4,5
1	178767002	.	T	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER||||548|RALGPS2|protein_coding|CODING|ENST00000324778|3|1),INTRON(MODIFIER||||557|RALGPS2|protein_coding|CODING|ENST00000367634|4|1),INTRON(MODIFIER||||583|RALGPS2|protein_coding|CODING|ENST00000367635|4|1),INTRON(MODIFIER|||||RALGPS2|retained_intron|CODING|ENST00000495034|4|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:0:0:0:0,0:0,0:0,0:29,29	66:2:0:0:0,0:4,4:0,0:60,62
1	178768438	.	T	G	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||548|RALGPS2|protein_coding|CODING|ENST00000324778|3|1),INTRON(MODIFIER||||557|RALGPS2|protein_coding|CODING|ENST00000367634|4|1),INTRON(MODIFIER||||583|RALGPS2|protein_coding|CODING|ENST00000367635|4|1),INTRON(MODIFIER|||||RALGPS2|retained_intron|CODING|ENST00000495034|4|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:0:0:0:0,0:0,0:0,0:33,34	92:1:0:0:0,0:0,0:6,7:85,85
1	178774257	rs200062245	G	T	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||548|RALGPS2|protein_coding|CODING|ENST00000324778|3|1),INTRON(MODIFIER||||557|RALGPS2|protein_coding|CODING|ENST00000367634|4|1),INTRON(MODIFIER||||583|RALGPS2|protein_coding|CODING|ENST00000367635|4|1),INTRON(MODIFIER|||||RALGPS2|retained_intron|CODING|ENST00000495034|4|1);RSPOS=178774257;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000080005000002000100;WGT=1;VC=SNV;INT;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:0:0:0:0,0:0,0:38,42:0,0	66:0:0:0:0,0:0,0:59,75:7,12
1	178774259	rs200683358	T	G	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||548|RALGPS2|protein_coding|CODING|ENST00000324778|3|1),INTRON(MODIFIER||||557|RALGPS2|protein_coding|CODING|ENST00000367634|4|1),INTRON(MODIFIER||||583|RALGPS2|protein_coding|CODING|ENST00000367635|4|1),INTRON(MODIFIER|||||RALGPS2|retained_intron|CODING|ENST00000495034|4|1);RSPOS=178774259;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000080005000002000100;WGT=1;VC=SNV;INT;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:1:0:0:0,0:0,0:0,0:37,42	67:0:0:0:0,0:0,0:6,12:61,76
1	179194741	.	A	C	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||RP11-345I18.4|processed_pseudogene|NON_CODING|ENST00000443050||1),INTRON(MODIFIER||||1058|ABL2|protein_coding|CODING|ENST00000507173|1|1),INTRON(MODIFIER||||1079|ABL2|protein_coding|CODING|ENST00000511413|1|1),INTRON(MODIFIER||||1161|ABL2|protein_coding|CODING|ENST00000367623|1|1),INTRON(MODIFIER||||1182|ABL2|protein_coding|CODING|ENST00000502732|1|1),INTRON(MODIFIER||||542|ABL2|protein_coding|CODING|ENST00000392043|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:0:0:0:35,35:0,0:0,0:0,0	70:0:0:0:63,64:7,7:0,0:0,0
1	181219977	.	G	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->CG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:0:0:0:0,0:0,1:36,37:0,0	79:1:0:0:0,0:9,12:69,70:0,0
1	181910335	rs184295675	G	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=181910335;GMAF=0.0018;dbSNPBuildID=135;SSR=0;SAO=0;VP=050000000005000016000100;WGT=1;VC=SNV;ASP;KGPhase1;KGPROD;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:1:0:0:0,0:0,0:32,33:0,0	79:2:0:0:4,4:0,0:72,74:1,1
1	182379358	.	A	G	.	PASS	NT=ref;QSS=24;QSS_NT=24;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||LINC00272|lincRNA|NON_CODING|ENST00000367563|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:2:0:0:29,32:0,0:0,0:0,0	73:1:0:0:59,60:0,0:13,13:0,0
1	183283492	.	C	G	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||307|NMNAT2|protein_coding|CODING|ENST00000287713|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	43:0:0:0:0,0:43,43:0,0:0,0	71:1:0:0:0,0:66,68:4,4:0,0
1	183283493	.	C	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER||||307|NMNAT2|protein_coding|CODING|ENST00000287713|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	43:0:0:0:0,0:43,43:0,0:0,0	70:1:0:0:0,0:64,66:0,0:5,5
1	184392591	.	C	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||121|C1orf21|protein_coding|CODING|ENST00000235307|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:0:0:0:0,0:34,34:0,0:0,0	88:1:0:0:0,1:77,77:0,0:10,10
1	184837315	.	G	C	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=EXON(MODIFIER|||||FAM129A|processed_transcript|CODING|ENST00000461167|1|1),INTRON(MODIFIER||||928|FAM129A|protein_coding|CODING|ENST00000367511|5|1),UPSTREAM(MODIFIER|||||FAM129A|processed_transcript|CODING|ENST00000487074||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:0:0:0:0,0:0,0:34,34:0,0	74:0:0:0:0,0:5,5:69,70:0,0
1	185224165	rs201034975	A	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||Y_RNA|misc_RNA|NON_CODING|ENST00000364551||1),DOWNSTREAM(MODIFIER|||||Y_RNA|misc_RNA|NON_CODING|ENST00000383913||1),INTRON(MODIFIER||||900|SWT1|protein_coding|CODING|ENST00000367500|16|1),INTRON(MODIFIER||||900|SWT1|protein_coding|CODING|ENST00000367501|16|1);RSPOS=185224165;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000080005000002000100;WGT=1;VC=SNV;INT;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:1:0:0:35,41:0,0:0,0:0,0	76:2:0:0:68,79:0,0:0,0:6,7
1	185737860	.	T	G	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||5518|HMCN1|protein_coding|CODING|ENST00000367492|1|1),INTRON(MODIFIER||||5635|HMCN1|protein_coding|CODING|ENST00000271588|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:2:0:0:0,0:0,0:0,0:36,38	84:2:0:0:0,0:0,0:7,8:75,77
1	187896893	.	T	C	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:0:0:0:0,0:0,0:0,0:36,36	79:2:0:0:0,0:6,6:1,2:70,71
1	188092262	.	C	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	25:0:0:0:0,0:25,25:0,0:0,0	73:1:0:0:0,0:63,64:0,0:9,9
1	188318856	.	C	T	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:0:0:0:0,0:35,35:0,0:0,0	69:0:0:0:0,0:58,58:1,1:10,10
1	189588356	.	C	A	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:1:0:0:0,0:39,40:0,0:0,0	89:0:0:0:7,7:82,82:0,0:0,0
1	191370115	.	G	A	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:0:0:0:0,0:0,0:35,35:0,0	74:0:0:0:6,6:0,0:68,68:0,0
1	192037280	.	T	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:0:0:0:0,0:0,0:0,0:32,32	69:1:0:0:6,6:0,0:0,0:62,63
1	193285057	.	C	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-452J13.1|lincRNA|NON_CODING|ENST00000420807|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	28:0:0:0:0,0:28,28:0,0:0,0	92:1:0:0:0,0:87,88:4,4:0,0
1	193970668	.	C	G	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:0:0:0:0,0:32,32:0,0:0,0	63:0:0:0:0,0:56,56:6,6:1,1
1	195044508	.	G	T	.	PASS	NT=ref;QSS=23;QSS_NT=23;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	22:1:0:0:0,0:0,0:21,22:0,0	77:1:0:0:1,1:0,0:59,61:16,16
1	196733080	.	G	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	17:0:0:0:0,0:0,0:17,17:0,0	38:1:0:0:0,0:0,0:29,29:8,9
1	196733090	rs149617716	G	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=196733090;GMAF=0.1859;dbSNPBuildID=134;SSR=0;SAO=0;VP=050000000005000014000100;WGT=1;VC=SNV;ASP;KGPhase1;KGPROD	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	18:0:0:0:0,0:0,0:18,18:0,0	38:0:0:0:0,0:7,7:31,31:0,0
1	197447950	.	G	A	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||1294|CRB1|protein_coding|CODING|ENST00000367399||1),DOWNSTREAM(MODIFIER||||1382|CRB1|protein_coding|CODING|ENST00000535699||1),DOWNSTREAM(MODIFIER||||1406|CRB1|protein_coding|CODING|ENST00000367400||1),DOWNSTREAM(MODIFIER||||42|CRB1|protein_coding|CODING|ENST00000448952||1),DOWNSTREAM(MODIFIER||||870|CRB1|protein_coding|CODING|ENST00000538660||1),DOWNSTREAM(MODIFIER||||887|CRB1|protein_coding|CODING|ENST00000544212||1),DOWNSTREAM(MODIFIER|||||CRB1|nonsense_mediated_decay|CODING|ENST00000484075||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:0:0:0:0,0:0,0:36,37:0,0	68:1:0:0:4,5:0,0:63,63:0,0
1	199201561	.	A	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-382E9.1|processed_transcript|NON_CODING|ENST00000452199|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:0:0:0:29,29:0,0:0,0:0,0	89:0:0:0:81,81:0,0:8,8:0,0
1	199413650	.	A	C	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:0:0:0:40,40:0,0:0,0:0,0	87:0:0:0:81,81:6,6:0,0:0,0
1	199621406	.	G	C	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:1:0:0:0,0:0,0:35,36:0,0	72:1:0:0:0,1:5,5:66,66:0,0
1	202690381	.	G	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	22:3:0:0:0,0:0,0:19,23:0,0	46:5:0:0:0,0:7,8:34,39:0,0
1	202872757	rs12067510	C	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||204|KLHL12|protein_coding|CODING|ENST00000367259|1|1),INTRON(MODIFIER||||568|KLHL12|protein_coding|CODING|ENST00000367261|6|1),INTRON(MODIFIER||||606|KLHL12|protein_coding|CODING|ENST00000435533|6|1);RSPOS=202872757;dbSNPBuildID=120;SSR=16;SAO=0;VP=050000080001000002000100;GENEINFO=KLHL12:59349;WGT=1;VC=SNV;INT;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	20:1:0:0:0,0:19,20:0,0:0,0	59:2:0:0:0,0:47,48:0,0:10,11
1	203748640	.	G	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||382|LAX1|protein_coding|CODING|ENST00000367217||1),DOWNSTREAM(MODIFIER||||398|LAX1|protein_coding|CODING|ENST00000442561||1),DOWNSTREAM(MODIFIER|||||LAX1|processed_transcript|CODING|ENST00000367215||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:0:0:0:0,0:0,0:31,31:0,0	85:0:0:0:6,6:1,1:78,79:0,0
1	203889071	.	C	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	41:3:0:0:0,0:38,43:0,0:0,0	78:7:0:0:6,8:65,79:0,1:0,1
1	204767831	.	G	A	.	PASS	NT=ref;QSS=23;QSS_NT=23;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	44:0:0:0:0,0:1,1:43,43:0,0	80:2:0:0:10,10:0,0:68,70:0,0
1	205400078	.	C	A	.	PASS	NT=ref;QSS=26;QSS_NT=26;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||108|LEMD1|protein_coding|CODING|ENST00000367154|1|1),INTRON(MODIFIER|||||LEMD1|processed_transcript|CODING|ENST00000495594|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	51:0:0:0:0,0:51,51:0,0:0,0	95:0:0:0:7,7:88,89:0,0:0,0
1	205548203	.	C	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||427|MFSD4|protein_coding|CODING|ENST00000536357|1|1),INTRON(MODIFIER||||440|MFSD4|protein_coding|CODING|ENST00000539267|1|1),INTRON(MODIFIER||||514|MFSD4|protein_coding|CODING|ENST00000367147|1|1),INTRON(MODIFIER|||||MFSD4|processed_transcript|CODING|ENST00000475956|1|1),INTRON(MODIFIER|||||MFSD4|processed_transcript|CODING|ENST00000489709|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:0:0:0:0,0:31,31:0,0:0,0	85:0:0:0:0,0:79,79:0,0:6,6
1	205722212	.	A	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER||||243|NUCKS1|protein_coding|CODING|ENST00000367142||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:2:0:0:29,31:3,3:0,0:0,0	80:0:0:0:71,71:1,1:8,8:0,0
1	206302559	.	G	C	.	PASS	NT=ref;QSS=25;QSS_NT=25;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-38J22.6|processed_transcript|NON_CODING|ENST00000436158|1|1),INTRON(MODIFIER|||||RP11-38J22.6|processed_transcript|NON_CODING|ENST00000455672|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	51:0:0:0:0,0:0,0:50,50:1,1	83:0:0:0:0,0:8,8:75,75:0,0
1	207098094	.	T	G	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||764|PIGR|protein_coding|CODING|ENST00000356495||1),INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER||||140|FAIM3|protein_coding|CODING|ENST00000530505||1),UPSTREAM(MODIFIER||||146|FAIM3|protein_coding|CODING|ENST00000529560||1),UPSTREAM(MODIFIER||||150|FAIM3|protein_coding|CODING|ENST00000525793||1),UPSTREAM(MODIFIER||||278|FAIM3|protein_coding|CODING|ENST00000442471||1),UPSTREAM(MODIFIER||||306|FAIM3|protein_coding|CODING|ENST00000420007||1),UPSTREAM(MODIFIER||||390|FAIM3|protein_coding|CODING|ENST00000367091||1),UPSTREAM(MODIFIER|||||FAIM3|nonsense_mediated_decay|CODING|ENST00000463473||1),UPSTREAM(MODIFIER|||||FAIM3|processed_transcript|CODING|ENST00000528654||1),UPSTREAM(MODIFIER|||||FAIM3|retained_intron|CODING|ENST00000533312||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	43:3:0:0:0,0:0,0:0,0:40,43	71:3:0:0:0,0:0,0:5,5:63,67
1	209199310	.	T	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	28:0:0:0:0,0:0,0:0,0:28,28	72:0:0:0:7,7:0,0:0,0:65,65
1	210112108	.	C	T	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||458|SYT14|protein_coding|CODING|ENST00000399639|1|1),INTRON(MODIFIER||||517|SYT14|protein_coding|CODING|ENST00000537238|1|1),INTRON(MODIFIER||||555|SYT14|protein_coding|CODING|ENST00000472886|1|1),INTRON(MODIFIER||||574|SYT14|protein_coding|CODING|ENST00000367019|1|1),INTRON(MODIFIER||||581|SYT14|protein_coding|CODING|ENST00000534859|1|1),INTRON(MODIFIER||||619|SYT14|protein_coding|CODING|ENST00000422431|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	41:1:0:0:0,0:40,41:0,0:0,0	79:1:0:0:0,0:74,75:0,0:4,4
1	210891353	.	G	A	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||962|KCNH1|protein_coding|CODING|ENST00000367007|10|1),INTRON(MODIFIER||||989|KCNH1|protein_coding|CODING|ENST00000271751|10|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:0:0:0:0,0:0,0:39,41:0,0	77:2:0:0:5,5:0,0:70,77:0,0
1	212194295	.	C	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||913|INTS7|protein_coding|CODING|ENST00000440600|2|1),INTRON(MODIFIER||||942|INTS7|protein_coding|CODING|ENST00000366992|2|1),INTRON(MODIFIER||||948|INTS7|protein_coding|CODING|ENST00000366993|2|1),INTRON(MODIFIER||||962|INTS7|protein_coding|CODING|ENST00000366994|2|1),INTRON(MODIFIER|||||INTS7|processed_transcript|CODING|ENST00000469606|2|1),UPSTREAM(MODIFIER|||||SNORA26|snoRNA|NON_CODING|ENST00000390885||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:0:0:0:0,0:29,30:0,0:0,0	84:2:0:0:0,0:75,76:7,8:0,0
1	212269799	.	G	A	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||7SK|misc_RNA|NON_CODING|ENST00000517070||1),INTRON(MODIFIER||||688|DTL|protein_coding|CODING|ENST00000542077|12|1),INTRON(MODIFIER||||730|DTL|protein_coding|CODING|ENST00000366991|13|1),INTRON(MODIFIER|||||DTL|processed_transcript|CODING|ENST00000463791|1|1),INTRON(MODIFIER|||||DTL|processed_transcript|CODING|ENST00000475419|11|1),INTRON(MODIFIER|||||DTL|processed_transcript|CODING|ENST00000489149|3|1),UPSTREAM(MODIFIER|||||DTL|processed_transcript|CODING|ENST00000496442||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:0:0:0:0,0:0,0:34,35:0,0	76:2:0:0:11,11:0,0:63,65:0,0
1	214104882	.	G	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||PROX1-AS1|antisense|NON_CODING|ENST00000413560|1|1),INTRON(MODIFIER|||||PROX1-AS1|antisense|NON_CODING|ENST00000433082|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:2:0:0:0,0:0,0:33,35:0,0	71:2:0:0:0,0:0,0:65,68:4,4
1	214109751	.	C	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||PROX1-AS1|antisense|NON_CODING|ENST00000413560|1|1),INTRON(MODIFIER|||||PROX1-AS1|antisense|NON_CODING|ENST00000433082|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:1:0:0:0,0:30,31:0,0:0,0	85:1:0:0:0,0:80,81:4,4:0,0
1	215969036	.	G	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||5202|USH2A|protein_coding|CODING|ENST00000307340|50|1),INTRON(MODIFIER||||5226|USH2A|protein_coding|CODING|ENST00000366943|50|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	28:0:0:0:0,0:0,0:28,28:0,0	94:1:0:0:0,0:5,5:88,89:0,0
1	216983655	.	A	G	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||396|ESRRG|protein_coding|CODING|ENST00000463665|3|1),INTRON(MODIFIER||||435|ESRRG|protein_coding|CODING|ENST00000359162|2|1),INTRON(MODIFIER||||435|ESRRG|protein_coding|CODING|ENST00000361395|2|1),INTRON(MODIFIER||||435|ESRRG|protein_coding|CODING|ENST00000361525|3|1),INTRON(MODIFIER||||435|ESRRG|protein_coding|CODING|ENST00000366938|1|1),INTRON(MODIFIER||||435|ESRRG|protein_coding|CODING|ENST00000366940|3|1),INTRON(MODIFIER||||435|ESRRG|protein_coding|CODING|ENST00000487276|3|1),INTRON(MODIFIER||||435|ESRRG|protein_coding|CODING|ENST00000493603|3|1),INTRON(MODIFIER||||435|ESRRG|protein_coding|CODING|ENST00000493748|3|1),INTRON(MODIFIER|||||ESRRG|nonsense_mediated_decay|CODING|ENST00000586199|2|1),UPSTREAM(MODIFIER||||435|ESRRG|protein_coding|CODING|ENST00000360012||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:1:0:0:32,33:0,1:0,0:0,0	77:2:0:0:71,73:0,0:4,4:0,0
1	217242230	rs73101245	G	A	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||396|ESRRG|protein_coding|CODING|ENST00000463665|1|1),INTRON(MODIFIER||||435|ESRRG|protein_coding|CODING|ENST00000359162|1|1),INTRON(MODIFIER||||435|ESRRG|protein_coding|CODING|ENST00000361525|1|1),INTRON(MODIFIER||||435|ESRRG|protein_coding|CODING|ENST00000366940|1|1),INTRON(MODIFIER||||435|ESRRG|protein_coding|CODING|ENST00000493603|1|1),INTRON(MODIFIER||||435|ESRRG|protein_coding|CODING|ENST00000493748|1|1),INTRON(MODIFIER|||||ESRRG|nonsense_mediated_decay|CODING|ENST00000586199|1|1),INTRON(MODIFIER|||||ESRRG|processed_transcript|CODING|ENST00000459825|1|1),INTRON(MODIFIER|||||ESRRG|processed_transcript|CODING|ENST00000471371|1|1),INTRON(MODIFIER|||||ESRRG|processed_transcript|CODING|ENST00000477799|1|1),INTRON(MODIFIER|||||ESRRG|processed_transcript|CODING|ENST00000488947|1|1);RSPOS=217242230;dbSNPBuildID=130;SSR=0;SAO=0;VP=05000008000100010e000100;GENEINFO=ESRRG:2104;WGT=1;VC=SNV;INT;GNO;KGPilot123;KGPROD;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:1:0:0:0,0:0,0:37,37:0,1	89:0:0:0:11,11:0,0:78,78:0,0
1	217584373	.	A	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	28:0:0:0:28,28:0,0:0,0:0,0	90:2:0:0:81,84:0,0:6,6:1,1
1	221313716	.	A	G	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:2:0:0:29,31:0,0:0,0:0,0	75:1:0:0:65,66:0,0:9,9:0,0
1	221327479	.	G	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:1:0:0:0,0:0,0:29,30:0,0	70:1:0:0:0,0:0,0:64,65:5,5
1	222617790	.	G	T	.	PASS	NT=ref;QSS=27;QSS_NT=27;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:0:0:0:0,0:0,0:39,40:0,0	67:3:0:0:0,0:0,0:53,55:11,11
1	223200591	.	G	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	25:1:0:0:0,1:0,0:24,26:0,0	70:4:0:0:10,13:0,0:56,64:0,0
1	223896059	.	G	A	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||130|CAPN2|protein_coding|CODING|ENST00000434648|1|1),INTRON(MODIFIER||||622|CAPN2|protein_coding|CODING|ENST00000433674|1|1),UPSTREAM(MODIFIER||||700|CAPN2|protein_coding|CODING|ENST00000295006||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:1:0:0:0,0:0,0:37,38:0,0	89:4:0:0:4,5:0,0:81,85:0,0
1	224090815	.	G	A	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	41:1:0:0:0,0:0,0:40,41:0,0	67:1:0:0:9,9:0,0:57,59:0,0
1	224090825	.	G	A	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	42:0:0:0:0,0:0,0:42,42:0,0	64:1:0:0:7,7:0,0:56,58:0,0
1	224211670	rs201874655	G	A	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=GG->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=224211670;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:2:0:0:0,2:0,0:37,38:0,1	79:9:0:0:9,16:0,1:60,65:1,1
1	224336473	.	A	G	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||179|FBXO28|protein_coding|CODING|ENST00000424254|3|1),INTRON(MODIFIER||||368|FBXO28|protein_coding|CODING|ENST00000366862|3|1),INTRON(MODIFIER|||||FBXO28|nonsense_mediated_decay|CODING|ENST00000523990|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:0:0:0:39,39:0,0:0,0:0,0	75:0:0:0:71,71:0,0:4,4:0,0
1	226452438	.	T	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||489|LIN9|protein_coding|CODING|ENST00000481685|9|1),INTRON(MODIFIER||||507|LIN9|protein_coding|CODING|ENST00000366801|9|1),INTRON(MODIFIER||||518|LIN9|protein_coding|CODING|ENST00000460719|9|1),INTRON(MODIFIER||||558|LIN9|protein_coding|CODING|ENST00000328205|10|1),INTRON(MODIFIER||||613|LIN9|protein_coding|CODING|ENST00000366808|10|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	28:0:0:0:0,0:0,0:0,0:28,28	70:1:0:0:0,0:6,7:1,1:62,62
1	228718970	.	G	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:0:0:0:0,0:0,0:30,30:0,0	93:2:0:0:4,5:0,0:87,88:0,0
1	229551722	rs4625317	G	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->CG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=229551722;GMAF=0.0508;dbSNPBuildID=111;SSR=0;SAO=0;VP=050100000005040116000100;WGT=1;VC=SNV;SLO;ASP;VLD;GNO;KGPhase1;KGPROD;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	22:1:0:0:0,0:0,2:21,22:0,0	58:1:0:0:0,0:10,19:47,47:0,0
1	230766775	.	A	G	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:0:0:0:36,37:0,0:0,0:0,0	72:0:0:0:64,64:1,1:7,7:0,0
1	231333626	.	G	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||721|TRIM67|protein_coding|CODING|ENST00000449018|4|1),INTRON(MODIFIER||||756|TRIM67|protein_coding|CODING|ENST00000366652|2|1),INTRON(MODIFIER||||781|TRIM67|protein_coding|CODING|ENST00000444294|2|1),INTRON(MODIFIER||||783|TRIM67|protein_coding|CODING|ENST00000366653|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:0:0:0:0,0:0,0:30,30:0,0	91:1:0:0:0,0:0,0:81,82:9,9
1	231471458	.	T	C	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=SYNONYMOUS_CODING(LOW|SILENT|gcA/gcG|A674|721|EXOC8|protein_coding|CODING|ENST00000366645|1|1),SYNONYMOUS_CODING(LOW|SILENT|gcA/gcG|A678|725|EXOC8|protein_coding|CODING|ENST00000360394|1|1),UPSTREAM(MODIFIER||||186|SPRTN|protein_coding|CODING|ENST00000366644||1),UPSTREAM(MODIFIER||||207|SPRTN|protein_coding|CODING|ENST00000008440||1),UPSTREAM(MODIFIER||||250|SPRTN|protein_coding|CODING|ENST00000391858||1),UPSTREAM(MODIFIER||||489|SPRTN|protein_coding|CODING|ENST00000295050||1),UPSTREAM(MODIFIER|||||SPRTN|processed_transcript|CODING|ENST00000492437||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:0:0:0:0,0:0,0:0,0:38,38	75:0:0:0:0,0:5,5:0,0:70,71
1	231869054	.	A	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||547|DISC1|protein_coding|CODING|ENST00000295051|3|1),INTRON(MODIFIER||||559|DISC1|protein_coding|CODING|ENST00000537876|3|1),INTRON(MODIFIER||||579|DISC1|protein_coding|CODING|ENST00000539444|3|1),INTRON(MODIFIER||||609|DISC1|protein_coding|CODING|ENST00000535944|3|1),INTRON(MODIFIER||||678|DISC1|protein_coding|CODING|ENST00000366636|3|1),INTRON(MODIFIER||||695|DISC1|protein_coding|CODING|ENST00000535983|3|1),INTRON(MODIFIER||||755|DISC1|protein_coding|CODING|ENST00000366633|3|1),INTRON(MODIFIER||||832|DISC1|protein_coding|CODING|ENST00000366637|3|1),INTRON(MODIFIER||||854|DISC1|protein_coding|CODING|ENST00000439617|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:0:0:0:31,31:0,0:0,0:0,0	86:6:0:0:73,76:0,1:7,10:0,0
1	233660013	.	G	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:1:0:0:0,0:0,0:32,34:0,0	73:0:0:0:0,0:0,0:67,67:6,6
1	234107038	rs142660996	C	T	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||490|SLC35F3|protein_coding|CODING|ENST00000366618|2|1);RSPOS=234107038;GMAF=0.0023;dbSNPBuildID=134;SSR=0;SAO=0;VP=050000080005000014000100;GENEINFO=SLC35F3:148641;WGT=1;VC=SNV;INT;ASP;KGPhase1;KGPROD	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:1:0:0:0,0:38,39:0,0:0,0	85:0:0:0:1,1:76,76:0,0:8,8
1	235512343	.	A	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||300|GGPS1|protein_coding|CODING|ENST00000282841||1),DOWNSTREAM(MODIFIER||||300|GGPS1|protein_coding|CODING|ENST00000358966||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:1:0:0:34,35:1,1:0,0:0,0	65:2:0:0:57,58:0,0:6,7:0,0
1	235697189	.	G	A	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||MTND5P19|processed_pseudogene|NON_CODING|ENST00000424872||1),INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||MTND6P14|processed_pseudogene|NON_CODING|ENST00000433044||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:0:0:0:0,0:0,0:39,39:0,0	61:0:0:0:6,6:0,0:55,55:0,0
1	236414898	.	A	G	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||144|ERO1LB|protein_coding|CODING|ENST00000327333|4|1),INTRON(MODIFIER||||467|ERO1LB|protein_coding|CODING|ENST00000354619|4|1),INTRON(MODIFIER||||70|ERO1LB|protein_coding|CODING|ENST00000366589|4|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:0:0:0:31,31:0,0:0,0:0,0	87:1:0:0:81,82:0,0:5,5:0,0
1	236828607	rs184505134	C	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->AC;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=236828607;GMAF=0.0096;dbSNPBuildID=135;SSR=0;SAO=0;VP=050000000005000014000100;WGT=1;VC=SNV;ASP;KGPhase1;KGPROD	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	21:0:0:0:1,1:20,20:0,0:0,0	67:2:0:0:22,24:43,43:0,0:0,0
1	236918924	.	T	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||388|ACTN2|protein_coding|CODING|ENST00000546208|10|1),INTRON(MODIFIER||||894|ACTN2|protein_coding|CODING|ENST00000366578|17|1),INTRON(MODIFIER||||894|ACTN2|protein_coding|CODING|ENST00000542672|17|1),INTRON(MODIFIER|||||ACTN2|processed_transcript|CODING|ENST00000461367|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	26:0:0:0:0,0:0,0:0,0:26,28	74:2:0:0:1,1:9,10:0,0:62,64
1	238082606	rs199979371	G	A	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||213|RYR2|protein_coding|CODING|ENST00000540213|29|1),INTRON(MODIFIER|||||RP11-193H5.1|processed_transcript|NON_CODING|ENST00000450451|9|1);RSPOS=238082606;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000080005000002000100;WGT=1;VC=SNV;INT;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	43:0:0:0:0,0:0,0:43,43:0,0	73:0:0:0:4,4:0,0:69,69:0,0
1	238871810	.	G	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:0:0:0:0,0:0,0:33,33:0,0	88:2:0:0:4,5:0,0:82,83:0,0
1	240765893	.	A	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||168|GREM2|protein_coding|CODING|ENST00000318160|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:0:0:0:31,31:0,0:0,0:0,0	86:1:0:0:78,80:6,7:1,1:0,0
1	240802257	.	T	C	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||RP11-467I20.3|processed_pseudogene|NON_CODING|ENST00000420757||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:0:0:0:0,0:0,0:0,0:37,37	85:0:0:0:0,0:12,12:0,0:73,73
1	241433988	.	G	C	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||424|RGS7|protein_coding|CODING|ENST00000348120|1|1),INTRON(MODIFIER||||424|RGS7|protein_coding|CODING|ENST00000401882|1|1),INTRON(MODIFIER||||469|RGS7|protein_coding|CODING|ENST00000366562|1|1),INTRON(MODIFIER||||469|RGS7|protein_coding|CODING|ENST00000366564|2|1),INTRON(MODIFIER||||477|RGS7|protein_coding|CODING|ENST00000366563|2|1),INTRON(MODIFIER||||487|RGS7|protein_coding|CODING|ENST00000366565|2|1),INTRON(MODIFIER||||495|RGS7|protein_coding|CODING|ENST00000407727|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:0:0:0:0,0:0,0:34,34:0,0	82:1:0:0:0,0:5,5:76,77:0,0
1	241495862	.	G	A	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||424|RGS7|protein_coding|CODING|ENST00000348120|1|1),INTRON(MODIFIER||||424|RGS7|protein_coding|CODING|ENST00000401882|1|1),INTRON(MODIFIER||||469|RGS7|protein_coding|CODING|ENST00000366562|1|1),INTRON(MODIFIER||||469|RGS7|protein_coding|CODING|ENST00000366564|2|1),INTRON(MODIFIER||||477|RGS7|protein_coding|CODING|ENST00000366563|2|1),INTRON(MODIFIER||||487|RGS7|protein_coding|CODING|ENST00000366565|2|1),INTRON(MODIFIER||||495|RGS7|protein_coding|CODING|ENST00000407727|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:0:0:0:0,0:0,0:40,40:0,0	71:0:0:0:5,5:0,0:66,67:0,0
1	241699521	.	C	G	.	PASS	NT=ref;QSS=23;QSS_NT=23;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||452|KMO|protein_coding|CODING|ENST00000366557|1|1),INTRON(MODIFIER||||473|KMO|protein_coding|CODING|ENST00000366558|1|1),INTRON(MODIFIER||||486|KMO|protein_coding|CODING|ENST00000366559|1|1),INTRON(MODIFIER|||||KMO|processed_transcript|CODING|ENST00000477907|1|1),INTRON(MODIFIER|||||KMO|processed_transcript|CODING|ENST00000480967|1|1),INTRON(MODIFIER|||||KMO|processed_transcript|CODING|ENST00000484229|1|1),INTRON(MODIFIER|||||KMO|processed_transcript|CODING|ENST00000484628|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:0:0:0:0,0:40,41:0,0:0,0	78:0:0:0:0,0:67,67:11,11:0,0
1	241787337	.	C	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||656|CHML|protein_coding|CODING|ENST00000366553||1),INTRON(MODIFIER||||323|OPN3|protein_coding|CODING|ENST00000331838|1|1),INTRON(MODIFIER||||402|OPN3|protein_coding|CODING|ENST00000366554|1|1),INTRON(MODIFIER|||||OPN3|processed_transcript|CODING|ENST00000463155|1|1),INTRON(MODIFIER|||||OPN3|processed_transcript|CODING|ENST00000469376|1|1),INTRON(MODIFIER|||||OPN3|processed_transcript|CODING|ENST00000478849|1|1),INTRON(MODIFIER|||||OPN3|processed_transcript|CODING|ENST00000490673|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	26:1:0:0:0,1:24,25:1,1:0,0	74:3:0:0:0,0:60,66:0,0:11,11
1	242337475	.	A	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||444|PLD5|protein_coding|CODING|ENST00000442594|6|1),INTRON(MODIFIER||||474|PLD5|protein_coding|CODING|ENST00000427495|5|1),INTRON(MODIFIER||||536|PLD5|protein_coding|CODING|ENST00000536534|5|1),INTRON(MODIFIER|||||PLD5|nonsense_mediated_decay|CODING|ENST00000314833|4|1),INTRON(MODIFIER|||||PLD5|nonsense_mediated_decay|CODING|ENST00000366545|6|1),INTRON(MODIFIER|||||PLD5|nonsense_mediated_decay|CODING|ENST00000467561|5|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:0:0:0:31,34:0,0:0,0:0,0	96:1:0:0:88,89:7,7:0,0:0,0
1	242818605	.	C	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:1:0:0:0,0:30,31:0,0:0,0	75:0:0:0:9,9:66,67:0,0:0,0
1	243037416	.	T	C	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:0:0:0:0,0:0,0:0,0:30,30	72:0:0:0:0,0:10,10:0,0:62,62
1	243056899	.	G	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||AL445675.1|miRNA|NON_CODING|ENST00000410702||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	27:0:0:0:0,0:0,0:27,27:0,0	73:1:0:0:0,0:0,0:65,65:7,8
1	243167074	.	T	C	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||RP11-261C10.1|lincRNA|NON_CODING|ENST00000427176||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:2:0:0:0,0:0,0:0,0:30,32	56:2:0:0:0,0:9,15:0,0:45,46
1	243167095	.	G	A	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||RP11-261C10.1|lincRNA|NON_CODING|ENST00000427176||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:0:0:0:0,0:0,0:29,29:0,0	51:2:0:0:7,10:0,0:42,44:0,0
1	243167109	.	C	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||RP11-261C10.1|lincRNA|NON_CODING|ENST00000427176||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:0:0:0:0,0:30,30:0,0:0,0	52:1:0:0:0,0:44,46:0,0:7,8
1	243792601	.	T	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||465|AKT3|protein_coding|CODING|ENST00000336199|5|1),INTRON(MODIFIER||||465|AKT3|protein_coding|CODING|ENST00000366540|6|1),INTRON(MODIFIER||||479|AKT3|protein_coding|CODING|ENST00000263826|5|1),INTRON(MODIFIER||||479|AKT3|protein_coding|CODING|ENST00000366539|6|1),UPSTREAM(MODIFIER|||||FABP7P1|processed_pseudogene|NON_CODING|ENST00000424004||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:0:0:0:0,0:0,0:0,0:30,30	94:3:0:0:0,0:6,6:0,0:85,89
1	244113115	rs28450691	T	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-278H7.1|processed_transcript|NON_CODING|ENST00000440494|1|1);RSPOS=244113115;dbSNPBuildID=125;SSR=0;SAO=0;VP=050000080001000002000100;GENEINFO=LOC339529:339529;WGT=1;VC=SNV;INT;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	25:0:0:0:0,0:0,0:0,0:25,25	88:0:0:0:0,0:0,0:11,11:77,78
1	244923045	.	T	A	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:0:0:0:0,0:0,0:0,0:37,38	75:2:0:0:7,8:1,2:0,0:65,65
1	245470172	.	A	G	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||2108|KIF26B|protein_coding|CODING|ENST00000407071|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:0:0:0:36,36:0,0:0,0:0,0	65:0:0:0:58,59:0,0:6,6:1,1
1	246798258	rs3006087	C	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||137|CNST|protein_coding|CODING|ENST00000366511||1),INTRON(MODIFIER||||616|CNST|protein_coding|CODING|ENST00000366512|6|1),INTRON(MODIFIER||||725|CNST|protein_coding|CODING|ENST00000366513|6|1),INTRON(MODIFIER|||||CNST|processed_transcript|CODING|ENST00000483271|5|1),UPSTREAM(MODIFIER|||||RP11-452J6.2|processed_pseudogene|NON_CODING|ENST00000449978||1);RSPOS=246798258;GMAF=0.3118;dbSNPBuildID=101;SSR=0;SAO=0;VP=050000080009040016000100;GENEINFO=CNST:163882;WGT=1;VC=SNV;INT;CFL;VLD;KGPhase1;KGPROD;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:0:0:0:0,0:31,34:0,0:0,0	61:1:0:0:0,0:56,59:4,4:0,0
1	246839901	.	T	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:2:0:0:0,0:0,0:0,0:29,32	78:2:0:0:0,0:5,6:0,0:71,72
1	248499662	.	G	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:0:0:0:0,0:0,0:30,30:1,1	90:2:0:0:7,7:0,0:81,83:0,0
1	248838970	.	T	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:2:0:0:0,0:0,0:2,3:31,36	73:2:0:0:1,1:8,13:1,2:61,68
2	293888	.	G	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||AC079779.4|antisense|NON_CODING|ENST00000427831|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	16:0:0:0:0,0:0,0:16,23:0,0	26:1:0:0:6,6:0,0:19,26:0,0
2	442888	rs150329904	G	A	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=442888;dbSNPBuildID=134;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:1:0:0:0,0:0,0:30,35:0,0	66:0:0:0:12,17:1,1:52,58:1,1
2	443001	.	G	C	.	PASS	NT=ref;QSS=23;QSS_NT=23;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	45:1:0:0:0,0:0,0:44,49:0,0	77:5:0:0:0,0:6,9:66,75:0,0
2	740561	.	G	C	.	PASS	NT=ref;QSS=30;QSS_NT=30;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||AC116609.2|lincRNA|NON_CODING|ENST00000425850||1),UPSTREAM(MODIFIER|||||AC116609.3|lincRNA|NON_CODING|ENST00000431542||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	73:13:0:0:0,2:0,2:60,118:0,0	128:14:0:0:0,0:6,11:108,181:0,0
2	956489	.	A	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=AA->AC;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER||||412|SNTG2|protein_coding|CODING|ENST00000407292|1|1),INTRON(MODIFIER||||539|SNTG2|protein_coding|CODING|ENST00000308624|1|1),INTRON(MODIFIER|||||SNTG2|nonsense_mediated_decay|CODING|ENST00000450962|1|1),INTRON(MODIFIER|||||SNTG2|nonsense_mediated_decay|CODING|ENST00000452177|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	27:2:0:0:24,24:0,1:0,0:1,3	63:0:0:0:51,51:12,12:0,0:0,0
2	1107734	rs34109399	T	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=TT->AT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER||||412|SNTG2|protein_coding|CODING|ENST00000407292|2|1),INTRON(MODIFIER||||539|SNTG2|protein_coding|CODING|ENST00000308624|4|1),INTRON(MODIFIER|||||SNTG2|nonsense_mediated_decay|CODING|ENST00000450962|5|1),INTRON(MODIFIER|||||SNTG2|nonsense_mediated_decay|CODING|ENST00000452177|5|1),INTRON(MODIFIER|||||SNTG2|processed_transcript|CODING|ENST00000463442|2|1);RSPOS=1107734;dbSNPBuildID=126;SSR=0;SAO=0;VP=050000080001000102000100;GENEINFO=SNTG2:54221;WGT=1;VC=SNV;INT;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	53:2:0:0:1,2:1,1:0,0:49,55	87:2:0:0:11,15:0,0:0,0:74,78
2	1160429	.	A	G	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||SNTG2|nonsense_mediated_decay|CODING|ENST00000452177||1),INTRON(MODIFIER||||412|SNTG2|protein_coding|CODING|ENST00000407292|2|1),INTRON(MODIFIER||||539|SNTG2|protein_coding|CODING|ENST00000308624|6|1),INTRON(MODIFIER|||||SNTG2|nonsense_mediated_decay|CODING|ENST00000450962|7|1),INTRON(MODIFIER|||||SNTG2|processed_transcript|CODING|ENST00000463442|4|1),INTRON(MODIFIER|||||SNTG2|processed_transcript|CODING|ENST00000467759|1|1),INTRON(MODIFIER|||||SNTG2|processed_transcript|CODING|ENST00000475201|1|1),INTRON(MODIFIER|||||SNTG2|processed_transcript|CODING|ENST00000494178|1|1),UPSTREAM(MODIFIER|||||AC114808.2|antisense|NON_CODING|ENST00000428335||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:2:0:0:33,35:0,1:0,0:0,0	68:1:0:0:57,57:1,1:9,11:0,0
2	1235078	.	A	G	.	PASS	NT=ref;QSS=26;QSS_NT=26;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||412|SNTG2|protein_coding|CODING|ENST00000407292|3|1),INTRON(MODIFIER||||539|SNTG2|protein_coding|CODING|ENST00000308624|9|1),INTRON(MODIFIER|||||SNTG2|processed_transcript|CODING|ENST00000494178|4|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:0:0:0:36,36:0,0:0,0:0,0	55:1:0:0:44,45:0,0:10,11:0,0
2	1511943	.	A	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||154|TPO|protein_coding|CODING|ENST00000425083|2|1),INTRON(MODIFIER||||363|TPO|protein_coding|CODING|ENST00000469607|4|1),INTRON(MODIFIER||||760|TPO|protein_coding|CODING|ENST00000349624|13|1),INTRON(MODIFIER||||760|TPO|protein_coding|CODING|ENST00000382198|12|1),INTRON(MODIFIER||||864|TPO|protein_coding|CODING|ENST00000422464|10|1),INTRON(MODIFIER||||876|TPO|protein_coding|CODING|ENST00000382201|13|1),INTRON(MODIFIER||||889|TPO|protein_coding|CODING|ENST00000346956|13|1),INTRON(MODIFIER||||929|TPO|protein_coding|CODING|ENST00000337415|14|1),INTRON(MODIFIER||||933|TPO|protein_coding|CODING|ENST00000329066|14|1),INTRON(MODIFIER||||933|TPO|protein_coding|CODING|ENST00000345913|14|1),INTRON(MODIFIER|||||TPO|processed_transcript|CODING|ENST00000462973|2|1),INTRON(MODIFIER|||||TPO|processed_transcript|CODING|ENST00000497517|4|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	28:0:0:0:28,30:0,0:0,0:0,0	71:0:0:0:64,64:7,8:0,0:0,0
2	1515057	rs4927587	G	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||154|TPO|protein_coding|CODING|ENST00000425083|2|1),INTRON(MODIFIER||||363|TPO|protein_coding|CODING|ENST00000469607|4|1),INTRON(MODIFIER||||760|TPO|protein_coding|CODING|ENST00000349624|13|1),INTRON(MODIFIER||||760|TPO|protein_coding|CODING|ENST00000382198|12|1),INTRON(MODIFIER||||864|TPO|protein_coding|CODING|ENST00000422464|10|1),INTRON(MODIFIER||||876|TPO|protein_coding|CODING|ENST00000382201|13|1),INTRON(MODIFIER||||889|TPO|protein_coding|CODING|ENST00000346956|13|1),INTRON(MODIFIER||||929|TPO|protein_coding|CODING|ENST00000337415|14|1),INTRON(MODIFIER||||933|TPO|protein_coding|CODING|ENST00000329066|14|1),INTRON(MODIFIER||||933|TPO|protein_coding|CODING|ENST00000345913|14|1),INTRON(MODIFIER|||||TPO|processed_transcript|CODING|ENST00000462973|2|1),INTRON(MODIFIER|||||TPO|processed_transcript|CODING|ENST00000497517|4|1),UPSTREAM(MODIFIER|||||TPO|processed_transcript|CODING|ENST00000479902||1);RSPOS=1515057;GMAF=0.3938;dbSNPBuildID=111;SSR=0;SAO=0;VP=050000080001040116000100;GENEINFO=TPO:7173;WGT=1;VC=SNV;INT;VLD;GNO;KGPhase1;KGPROD;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	17:1:0:0:0,0:0,0:16,21:0,0	35:4:0:0:8,10:0,2:23,30:0,0
2	1549627	.	C	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||154|TPO|protein_coding|CODING|ENST00000425083||1),DOWNSTREAM(MODIFIER||||363|TPO|protein_coding|CODING|ENST00000469607||1),DOWNSTREAM(MODIFIER||||760|TPO|protein_coding|CODING|ENST00000349624||1),DOWNSTREAM(MODIFIER||||760|TPO|protein_coding|CODING|ENST00000382198||1),DOWNSTREAM(MODIFIER||||864|TPO|protein_coding|CODING|ENST00000422464||1),DOWNSTREAM(MODIFIER||||876|TPO|protein_coding|CODING|ENST00000382201||1),DOWNSTREAM(MODIFIER||||889|TPO|protein_coding|CODING|ENST00000346956||1),DOWNSTREAM(MODIFIER||||929|TPO|protein_coding|CODING|ENST00000337415||1),DOWNSTREAM(MODIFIER||||933|TPO|protein_coding|CODING|ENST00000329066||1),DOWNSTREAM(MODIFIER||||933|TPO|protein_coding|CODING|ENST00000345913||1),DOWNSTREAM(MODIFIER|||||AC144450.1|antisense|NON_CODING|ENST00000438247||1),DOWNSTREAM(MODIFIER|||||TPO|processed_transcript|CODING|ENST00000479902||1),DOWNSTREAM(MODIFIER|||||TPO|processed_transcript|CODING|ENST00000497517||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:0:0:0:0,0:32,33:0,0:0,0	59:0:0:0:4,4:55,55:0,0:0,0
2	1751106	.	T	A	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER||||1479|PXDN|protein_coding|CODING|ENST00000252804||1),UPSTREAM(MODIFIER||||223|PXDN|protein_coding|CODING|ENST00000425171||1),UPSTREAM(MODIFIER|||||PXDN|processed_transcript|CODING|ENST00000485177||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	57:1:0:0:1,1:0,0:1,1:54,55	81:0:0:0:9,9:0,0:1,1:71,71
2	1968902	.	G	A	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1184|MYT1L|protein_coding|CODING|ENST00000428368|8|1),INTRON(MODIFIER||||1186|MYT1L|protein_coding|CODING|ENST00000399161|8|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:0:0:0:0,0:0,0:39,39:0,0	91:4:0:0:4,4:0,0:83,87:0,0
2	2000042	.	A	G	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||MYT1L|processed_transcript|CODING|ENST00000479156||1),INTRON(MODIFIER||||1184|MYT1L|protein_coding|CODING|ENST00000428368|5|1),INTRON(MODIFIER||||1186|MYT1L|protein_coding|CODING|ENST00000399161|5|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:0:0:0:37,37:1,1:0,0:0,0	85:2:0:0:76,77:0,0:7,7:0,0
2	2000095	.	T	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=DOWNSTREAM(MODIFIER|||||MYT1L|processed_transcript|CODING|ENST00000479156||1),INTRON(MODIFIER||||1184|MYT1L|protein_coding|CODING|ENST00000428368|5|1),INTRON(MODIFIER||||1186|MYT1L|protein_coding|CODING|ENST00000399161|5|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:2:0:0:0,0:0,1:0,0:34,35	81:2:0:0:1,1:11,11:0,1:67,68
2	2576569	.	T	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	43:2:0:0:2,2:0,1:0,0:39,46	85:4:1:0:3,5:7,10:0,0:71,95
2	2584507	rs13029993	G	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=2584507;RV;dbSNPBuildID=121;SSR=0;SAO=0;VP=050000000001000002000100;WGT=1;VC=SNV;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	24:1:0:0:0,0:0,0:23,28:0,0	63:3:0:0:1,1:9,10:50,56:0,0
2	2724839	.	G	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:5:0:0:0,0:0,0:31,36:0,0	66:9:0:0:0,1:6,7:51,59:0,0
2	2796524	rs59739685	G	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=2796524;GMAF=0.1007;dbSNPBuildID=129;SSR=0;SAO=0;VP=050100000001040116000100;WGT=1;VC=SNV;SLO;VLD;GNO;KGPhase1;KGPROD;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	27:1:0:0:0,0:0,0:26,28:0,0	55:3:0:0:7,11:0,0:45,56:0,0
2	2841680	.	G	T	.	PASS	NT=ref;QSS=28;QSS_NT=28;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||AC011995.1|lincRNA|NON_CODING|ENST00000452701|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	58:1:0:0:0,0:0,0:57,58:0,0	93:3:0:0:0,1:1,1:80,81:9,12
2	3061713	rs201731111	G	A	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||AC019118.2|lincRNA|NON_CODING|ENST00000457478|3|1);RSPOS=3061713;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	55:2:0:0:1,1:1,1:51,59:0,0	81:5:0:0:5,6:0,0:71,90:0,1
2	3188392	.	C	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||387|TSSC1|protein_coding|CODING|ENST00000382125||1),DOWNSTREAM(MODIFIER||||414|TSSC1|protein_coding|CODING|ENST00000398659||1),DOWNSTREAM(MODIFIER|||||TSSC1|nonsense_mediated_decay|CODING|ENST00000455162||1),DOWNSTREAM(MODIFIER|||||TSSC1|processed_transcript|CODING|ENST00000478754||1),DOWNSTREAM(MODIFIER|||||TSSC1|retained_intron|CODING|ENST00000496433||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:1:0:0:0,0:31,33:0,0:0,0	101:1:1:0:0,0:93,95:0,0:7,7
2	3188393	.	A	G	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||387|TSSC1|protein_coding|CODING|ENST00000382125||1),DOWNSTREAM(MODIFIER||||414|TSSC1|protein_coding|CODING|ENST00000398659||1),DOWNSTREAM(MODIFIER|||||TSSC1|nonsense_mediated_decay|CODING|ENST00000455162||1),DOWNSTREAM(MODIFIER|||||TSSC1|processed_transcript|CODING|ENST00000478754||1),DOWNSTREAM(MODIFIER|||||TSSC1|retained_intron|CODING|ENST00000496433||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:1:0:0:31,33:0,0:0,0:0,0	101:1:1:0:89,91:0,0:10,10:1,1
2	3244807	.	C	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||177|TSSC1|protein_coding|CODING|ENST00000441271|1|1),INTRON(MODIFIER||||314|TSSC1|protein_coding|CODING|ENST00000443925|4|1),INTRON(MODIFIER||||387|TSSC1|protein_coding|CODING|ENST00000382125|4|1),INTRON(MODIFIER||||414|TSSC1|protein_coding|CODING|ENST00000398659|5|1),INTRON(MODIFIER|||||TSSC1|nonsense_mediated_decay|CODING|ENST00000406835|5|1),INTRON(MODIFIER|||||TSSC1|nonsense_mediated_decay|CODING|ENST00000435721|3|1),INTRON(MODIFIER|||||TSSC1|nonsense_mediated_decay|CODING|ENST00000455162|2|1),INTRON(MODIFIER|||||TSSC1|processed_transcript|CODING|ENST00000462515|2|1),INTRON(MODIFIER|||||TSSC1|processed_transcript|CODING|ENST00000463662|3|1),INTRON(MODIFIER|||||TSSC1|processed_transcript|CODING|ENST00000478754|6|1),INTRON(MODIFIER|||||TSSC1|retained_intron|CODING|ENST00000482570|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:1:0:0:0,0:32,38:0,0:0,1	94:5:0:0:0,1:84,100:0,0:5,9
2	3291591	rs111720812	C	G	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||154|TSSC1|protein_coding|CODING|ENST00000444776|4|1),INTRON(MODIFIER||||177|TSSC1|protein_coding|CODING|ENST00000441271|1|1),INTRON(MODIFIER||||314|TSSC1|protein_coding|CODING|ENST00000443925|3|1),INTRON(MODIFIER||||387|TSSC1|protein_coding|CODING|ENST00000382125|3|1),INTRON(MODIFIER||||414|TSSC1|protein_coding|CODING|ENST00000398659|3|1),INTRON(MODIFIER|||||TSSC1|nonsense_mediated_decay|CODING|ENST00000406835|4|1),INTRON(MODIFIER|||||TSSC1|nonsense_mediated_decay|CODING|ENST00000435721|3|1),INTRON(MODIFIER|||||TSSC1|nonsense_mediated_decay|CODING|ENST00000455162|2|1),INTRON(MODIFIER|||||TSSC1|processed_transcript|CODING|ENST00000463662|3|1),INTRON(MODIFIER|||||TSSC1|processed_transcript|CODING|ENST00000478754|3|1),UPSTREAM(MODIFIER|||||TSSC1|processed_transcript|CODING|ENST00000462515||1);RSPOS=3291591;dbSNPBuildID=132;SSR=0;SAO=0;VP=050000080001000102000100;GENEINFO=TSSC1:7260;WGT=1;VC=SNV;INT;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	42:2:0:0:0,0:40,44:0,0:0,0	96:1:0:0:0,0:88,89:7,7:0,0
2	3320758	.	T	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||154|TSSC1|protein_coding|CODING|ENST00000444776|4|1),INTRON(MODIFIER||||177|TSSC1|protein_coding|CODING|ENST00000441271|1|1),INTRON(MODIFIER||||314|TSSC1|protein_coding|CODING|ENST00000443925|3|1),INTRON(MODIFIER||||387|TSSC1|protein_coding|CODING|ENST00000382125|3|1),INTRON(MODIFIER||||414|TSSC1|protein_coding|CODING|ENST00000398659|3|1),INTRON(MODIFIER|||||TSSC1|nonsense_mediated_decay|CODING|ENST00000406835|4|1),INTRON(MODIFIER|||||TSSC1|nonsense_mediated_decay|CODING|ENST00000435721|3|1),INTRON(MODIFIER|||||TSSC1|nonsense_mediated_decay|CODING|ENST00000455162|2|1),INTRON(MODIFIER|||||TSSC1|processed_transcript|CODING|ENST00000463662|3|1),INTRON(MODIFIER|||||TSSC1|processed_transcript|CODING|ENST00000478754|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:1:0:0:0,0:0,0:0,1:38,38	87:0:0:0:0,0:7,7:1,1:79,79
2	3823519	rs74171417	C	G	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->CG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER||||297|DCDC2C|protein_coding|CODING|ENST00000423741|8|1),INTRON(MODIFIER|||||DCDC2C|processed_transcript|CODING|ENST00000537457|5|1);RSPOS=3823519;dbSNPBuildID=130;SSR=0;SAO=0;VP=050100000001040102000100;WGT=1;VC=SNV;SLO;VLD;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:0:0:0:0,0:33,33:0,2:0,0	71:0:0:0:0,0:60,64:11,13:0,0
2	4534529	.	C	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:0:0:0:0,0:31,31:0,0:0,0	80:0:0:0:0,0:73,74:0,0:7,7
2	4576603	.	C	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:1:0:0:0,0:33,34:0,0:0,0	78:1:0:0:0,0:73,74:0,0:4,4
2	6587587	.	G	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:0:0:0:0,0:0,0:30,30:0,0	56:1:0:0:0,0:0,0:50,51:5,5
2	7063581	.	C	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||292|RNF144A|protein_coding|CODING|ENST00000320892|1|1),INTRON(MODIFIER|||||RNF144A|processed_transcript|CODING|ENST00000467276|1|1),UPSTREAM(MODIFIER|||||RNF144A-AS1|processed_transcript|NON_CODING|ENST00000418970||1),UPSTREAM(MODIFIER|||||RNF144A-AS1|processed_transcript|NON_CODING|ENST00000426122||1),UPSTREAM(MODIFIER|||||RNF144A-AS1|processed_transcript|NON_CODING|ENST00000437589||1),UPSTREAM(MODIFIER|||||RNF144A-AS1|processed_transcript|NON_CODING|ENST00000439208||1),UPSTREAM(MODIFIER|||||RNF144A-AS1|retained_intron|NON_CODING|ENST00000424351||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	28:0:0:0:0,0:28,28:0,0:0,0	64:0:0:0:0,0:60,60:4,4:0,0
2	7260528	rs7590696	C	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=7260528;GMAF=0.1145;dbSNPBuildID=116;SSR=0;SAO=0;VP=050000000001040116000100;WGT=1;VC=SNV;VLD;GNO;KGPhase1;KGPROD;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	46:1:0:0:1,1:42,43:0,0:2,2	65:4:0:0:6,7:54,58:1,1:0,0
2	9202534	.	T	C	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:1:0:0:0,0:0,0:0,0:38,40	80:0:0:0:0,0:5,5:0,0:75,75
2	10138830	.	A	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||AC010969.1|antisense|NON_CODING|ENST00000340444||1),INTRON(MODIFIER||||429|GRHL1|protein_coding|CODING|ENST00000324883|13|1),INTRON(MODIFIER||||618|GRHL1|protein_coding|CODING|ENST00000324907|14|1),INTRON(MODIFIER||||618|GRHL1|protein_coding|CODING|ENST00000405379|15|1),INTRON(MODIFIER||||72|GRHL1|protein_coding|CODING|ENST00000480736|3|1),INTRON(MODIFIER|||||GRHL1|nonsense_mediated_decay|CODING|ENST00000464418|14|1),INTRON(MODIFIER|||||GRHL1|nonsense_mediated_decay|CODING|ENST00000472167|14|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	26:1:1:0:25,28:0,0:0,0:0,0	45:2:0:0:37,39:0,1:6,8:0,0
2	10539366	.	A	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||193|HPCAL1|protein_coding|CODING|ENST00000307845|2|1),INTRON(MODIFIER||||193|HPCAL1|protein_coding|CODING|ENST00000381765|2|1),INTRON(MODIFIER||||29|HPCAL1|protein_coding|CODING|ENST00000423674|2|1),INTRON(MODIFIER|||||HPCAL1|nonsense_mediated_decay|CODING|ENST00000419810|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	47:12:0:0:35,100:0,0:0,5:0,3	112:22:0:0:80,226:1,6:2,7:7,9
2	10539372	.	A	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||193|HPCAL1|protein_coding|CODING|ENST00000307845|2|1),INTRON(MODIFIER||||193|HPCAL1|protein_coding|CODING|ENST00000381765|2|1),INTRON(MODIFIER||||29|HPCAL1|protein_coding|CODING|ENST00000423674|2|1),INTRON(MODIFIER|||||HPCAL1|nonsense_mediated_decay|CODING|ENST00000419810|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	51:13:0:0:38,112:0,5:0,0:0,1	114:27:0:0:81,253:5,13:1,2:0,0
2	12128877	.	C	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||AC096559.1|lincRNA|NON_CODING|ENST00000438292|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	27:0:0:0:0,0:27,27:0,0:0,0	76:0:0:0:0,0:71,71:0,0:5,5
2	12752788	.	T	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:1:0:0:0,0:0,0:0,0:32,33	81:1:0:0:0,0:9,9:0,1:71,71
2	13239396	.	C	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	27:0:0:0:0,0:27,28:0,0:0,0	71:2:0:0:4,4:64,65:1,2:0,0
2	17353739	.	G	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	27:0:0:0:0,0:0,0:27,27:0,0	78:0:0:0:5,5:0,0:73,73:0,0
2	18151159	.	C	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||KCNS3|processed_transcript|CODING|ENST00000465292|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	42:0:0:0:1,1:41,41:0,0:0,0	62:0:0:0:9,9:53,53:0,0:0,0
2	18477477	rs191188972	G	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||KCNS3|processed_transcript|CODING|ENST00000465292|3|1);RSPOS=18477477;GMAF=0.1172;dbSNPBuildID=135;SSR=0;SAO=0;VP=050000000005000016000100;WGT=1;VC=SNV;ASP;KGPhase1;KGPROD;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:2:0:0:0,0:0,0:28,34:0,0	86:5:0:0:1,2:5,5:75,87:0,0
2	18477518	.	C	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||KCNS3|processed_transcript|CODING|ENST00000465292|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	28:0:0:0:0,0:28,36:0,0:0,0	65:1:0:0:0,2:59,73:4,4:1,1
2	19064348	.	T	A	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:0:0:0:0,0:0,0:0,0:34,34	75:1:0:0:9,9:0,0:0,0:65,66
2	21973023	.	C	T	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||AC067959.1|lincRNA|NON_CODING|ENST00000435237|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	41:0:0:0:0,0:41,42:0,0:0,0	80:1:0:0:1,1:73,74:0,0:5,5
2	23530364	.	G	C	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:0:0:0:0,0:0,0:39,40:0,0	85:1:0:0:0,0:8,8:76,77:0,0
2	24197130	.	G	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||206|UBXN2A|protein_coding|CODING|ENST00000535786|3|1),INTRON(MODIFIER||||259|UBXN2A|protein_coding|CODING|ENST00000309033|3|1),INTRON(MODIFIER||||259|UBXN2A|protein_coding|CODING|ENST00000404924|4|1),INTRON(MODIFIER|||||UBXN2A|processed_transcript|CODING|ENST00000446425|4|1),INTRON(MODIFIER|||||UBXN2A|retained_intron|CODING|ENST00000479859|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	27:0:0:0:0,0:0,0:27,30:0,0	60:2:0:0:5,6:0,0:52,55:1,1
2	25222801	.	T	C	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=TT->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER|||||DNAJC27-AS1|processed_transcript|NON_CODING|ENST00000428614|1|1),INTRON(MODIFIER|||||DNAJC27-AS1|processed_transcript|NON_CODING|ENST00000434897|1|1),INTRON(MODIFIER|||||DNAJC27-AS1|processed_transcript|NON_CODING|ENST00000445389|1|1),INTRON(MODIFIER|||||DNAJC27-AS1|processed_transcript|NON_CODING|ENST00000451291|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:0:0:0:0,0:0,0:0,0:39,39	63:0:0:0:0,0:5,5:0,0:58,59
2	25406715	.	G	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:1:0:0:0,0:0,0:29,30:0,0	89:2:0:0:5,5:0,0:82,85:0,0
2	27540151	.	G	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||MPV17|retained_intron|CODING|ENST00000494436||1),INTRON(MODIFIER||||110|MPV17|protein_coding|CODING|ENST00000399052|2|1),INTRON(MODIFIER||||113|MPV17|protein_coding|CODING|ENST00000405076|2|1),INTRON(MODIFIER||||114|MPV17|protein_coding|CODING|ENST00000428910|2|1),INTRON(MODIFIER||||120|MPV17|protein_coding|CODING|ENST00000357186|1|1),INTRON(MODIFIER||||170|MPV17|protein_coding|CODING|ENST00000402310|1|1),INTRON(MODIFIER||||171|MPV17|protein_coding|CODING|ENST00000403262|1|1),INTRON(MODIFIER||||176|MPV17|protein_coding|CODING|ENST00000233545|1|1),INTRON(MODIFIER||||176|MPV17|protein_coding|CODING|ENST00000380044|2|1),INTRON(MODIFIER||||191|MPV17|protein_coding|CODING|ENST00000405983|2|1),INTRON(MODIFIER||||99|MPV17|protein_coding|CODING|ENST00000402722|2|1),INTRON(MODIFIER|||||MPV17|nonsense_mediated_decay|CODING|ENST00000415514|2|1),INTRON(MODIFIER|||||MPV17|nonsense_mediated_decay|CODING|ENST00000426513|2|1),INTRON(MODIFIER|||||MPV17|retained_intron|CODING|ENST00000486898|2|1),INTRON(MODIFIER|||||MPV17|retained_intron|CODING|ENST00000489478|2|1),INTRON(MODIFIER|||||MPV17|retained_intron|CODING|ENST00000492879|2|1),INTRON(MODIFIER|||||MPV17|retained_intron|CODING|ENST00000495429|2|1),INTRON(MODIFIER|||||MPV17|retained_intron|CODING|ENST00000497981|2|1),UPSTREAM(MODIFIER|||||MPV17|retained_intron|CODING|ENST00000475085||1),UPSTREAM(MODIFIER|||||MPV17|retained_intron|CODING|ENST00000481575||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:1:0:0:0,0:0,0:29,30:0,0	73:0:0:0:7,7:0,0:66,66:0,0
2	27763624	.	C	T	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||260|AC109829.1|protein_coding|CODING|ENST00000447166|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	18:1:0:0:0,0:17,24:0,0:0,0	35:4:0:0:0,0:22,32:0,1:9,10
2	29102026	.	T	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:1:0:0:0,0:0,0:0,0:30,31	85:1:0:0:0,0:6,6:0,0:78,80
2	29102027	.	G	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:1:0:0:1,1:0,0:29,30:0,0	84:1:0:0:0,0:5,5:78,80:0,0
2	29231361	.	T	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1019|FAM179A|protein_coding|CODING|ENST00000379558|6|1),INTRON(MODIFIER||||161|FAM179A|protein_coding|CODING|ENST00000401723|2|1),INTRON(MODIFIER||||964|FAM179A|protein_coding|CODING|ENST00000403861|6|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:0:0:0:0,0:0,0:0,0:32,32	87:0:0:0:0,0:10,10:0,0:77,78
2	29647306	.	T	C	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1620|ALK|protein_coding|CODING|ENST00000389048|4|1),INTRON(MODIFIER||||450|ALK|protein_coding|CODING|ENST00000431873|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:1:0:0:0,0:0,0:0,1:36,37	71:0:0:0:0,0:4,4:0,0:67,67
2	30447315	.	C	T	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:0:0:0:0,0:39,39:0,0:0,0	71:0:0:0:0,0:65,65:0,0:6,6
2	31120276	.	A	G	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:0:0:0:37,38:0,0:0,0:0,0	80:0:0:0:73,73:0,0:7,7:0,0
2	32207270	.	T	G	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||100|MEMO1|protein_coding|CODING|ENST00000407893|1|1),INTRON(MODIFIER||||274|MEMO1|protein_coding|CODING|ENST00000426310|1|1),INTRON(MODIFIER||||297|MEMO1|protein_coding|CODING|ENST00000295065|1|1),INTRON(MODIFIER||||297|MEMO1|protein_coding|CODING|ENST00000404530|2|1),INTRON(MODIFIER|||||MEMO1|nonsense_mediated_decay|CODING|ENST00000413686|1|1),INTRON(MODIFIER|||||MEMO1|processed_transcript|CODING|ENST00000490459|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:0:0:0:0,0:0,0:0,0:31,32	70:1:0:0:0,0:0,0:11,11:58,60
2	33023446	.	G	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||843|TTC27|protein_coding|CODING|ENST00000317907|16|1),INTRON(MODIFIER|||||TTC27|nonsense_mediated_decay|CODING|ENST00000428527|4|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:0:0:0:1,2:0,0:32,33:0,0	59:2:0:0:9,11:0,0:48,49:0,0
2	33407808	rs4456682	T	C	.	PASS	NT=ref;QSS=23;QSS_NT=23;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1340|LTBP1|protein_coding|CODING|ENST00000402934|1|1),INTRON(MODIFIER||||1342|LTBP1|protein_coding|CODING|ENST00000404525|1|1),INTRON(MODIFIER||||1353|LTBP1|protein_coding|CODING|ENST00000418533|1|1),INTRON(MODIFIER||||1395|LTBP1|protein_coding|CODING|ENST00000407925|1|1),INTRON(MODIFIER||||1396|LTBP1|protein_coding|CODING|ENST00000390003|1|1),INTRON(MODIFIER||||1721|LTBP1|protein_coding|CODING|ENST00000404816|5|1),INTRON(MODIFIER||||1722|LTBP1|protein_coding|CODING|ENST00000354476|5|1),INTRON(MODIFIER||||196|LTBP1|protein_coding|CODING|ENST00000432635|2|1);RSPOS=33407808;dbSNPBuildID=111;SSR=0;SAO=0;VP=050000080005040102000100;GENEINFO=LTBP1:4052;WGT=1;VC=SNV;INT;ASP;VLD;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	25:1:1:0:0,0:0,0:1,2:23,24	42:1:1:0:0,0:9,10:0,0:32,33
2	34105224	rs149965099	A	G	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||AC009499.1|lincRNA|NON_CODING|ENST00000366209|2|1),INTRON(MODIFIER|||||AC009499.1|lincRNA|NON_CODING|ENST00000442026|2|1);RSPOS=34105224;GMAF=0.0321;dbSNPBuildID=134;SSR=0;SAO=0;VP=050000000005000014000100;WGT=1;VC=SNV;ASP;KGPhase1;KGPROD	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:0:0:0:31,31:0,0:0,0:0,0	83:2:0:0:75,76:0,0:6,8:0,0
2	34105232	.	C	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||AC009499.1|lincRNA|NON_CODING|ENST00000366209|2|1),INTRON(MODIFIER|||||AC009499.1|lincRNA|NON_CODING|ENST00000442026|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:0:0:0:0,0:33,33:0,0:0,0	81:2:0:0:0,0:73,76:0,0:6,6
2	34231966	.	T	A	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||AC009499.1|lincRNA|NON_CODING|ENST00000366209|4|1),INTRON(MODIFIER|||||AC009499.1|lincRNA|NON_CODING|ENST00000442026|5|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:0:0:0:0,0:0,0:0,0:37,37	69:1:0:0:5,5:0,0:0,0:63,65
2	34234125	rs111563918	C	A	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||AC009499.1|lincRNA|NON_CODING|ENST00000366209|4|1),INTRON(MODIFIER|||||AC009499.1|lincRNA|NON_CODING|ENST00000442026|5|1);RSPOS=34234125;dbSNPBuildID=132;SSR=0;SAO=0;VP=050100000001000102000100;WGT=1;VC=SNV;SLO;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	41:0:1:0:0,0:41,41:0,0:0,0	78:2:2:0:7,7:69,71:0,0:0,0
2	34281153	.	G	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||AC009499.1|lincRNA|NON_CODING|ENST00000366209|4|1),INTRON(MODIFIER|||||AC009499.1|lincRNA|NON_CODING|ENST00000442026|5|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:0:0:0:0,0:0,0:31,31:0,0	75:1:0:0:4,4:0,0:70,71:0,0
2	34531361	.	G	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:0:0:0:0,0:0,0:31,31:0,0	77:1:0:0:0,0:0,0:71,73:5,5
2	34533300	.	G	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:1:0:0:0,0:0,0:31,32:0,0	70:0:0:0:0,0:0,0:65,65:5,5
2	34859608	.	A	C	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||AC073218.1|lincRNA|NON_CODING|ENST00000422558|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:0:0:0:35,35:0,0:1,1:0,0	70:0:0:0:64,64:6,8:0,0:0,0
2	35275627	.	C	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||AC012593.1|lincRNA|NON_CODING|ENST00000453451|2|1),INTRON(MODIFIER|||||AC012593.1|lincRNA|NON_CODING|ENST00000585391|1|1),INTRON(MODIFIER|||||AC012593.1|lincRNA|NON_CODING|ENST00000586769|1|1),INTRON(MODIFIER|||||AC012593.1|lincRNA|NON_CODING|ENST00000587791|1|1),INTRON(MODIFIER|||||AC012593.1|lincRNA|NON_CODING|ENST00000588650|1|1),INTRON(MODIFIER|||||AC012593.1|lincRNA|NON_CODING|ENST00000588944|1|1),INTRON(MODIFIER|||||AC012593.1|lincRNA|NON_CODING|ENST00000591221|1|1),INTRON(MODIFIER|||||AC012593.1|lincRNA|NON_CODING|ENST00000592523|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	28:0:0:0:0,0:27,27:0,0:1,1	97:2:0:0:8,9:87,89:0,0:0,0
2	35344151	.	G	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||AC012593.1|lincRNA|NON_CODING|ENST00000453451|2|1),INTRON(MODIFIER|||||AC012593.1|lincRNA|NON_CODING|ENST00000585391|1|1),INTRON(MODIFIER|||||AC012593.1|lincRNA|NON_CODING|ENST00000586769|1|1),INTRON(MODIFIER|||||AC012593.1|lincRNA|NON_CODING|ENST00000587791|1|1),INTRON(MODIFIER|||||AC012593.1|lincRNA|NON_CODING|ENST00000588650|1|1),INTRON(MODIFIER|||||AC012593.1|lincRNA|NON_CODING|ENST00000588944|1|1),INTRON(MODIFIER|||||AC012593.1|lincRNA|NON_CODING|ENST00000591221|1|1),INTRON(MODIFIER|||||AC012593.1|lincRNA|NON_CODING|ENST00000592523|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:1:0:0:0,0:0,0:28,29:0,0	71:0:0:0:0,0:5,5:66,66:0,0
2	39052847	.	T	C	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1386|DHX57|protein_coding|CODING|ENST00000295373|16|1),INTRON(MODIFIER|||||DHX57|nonsense_mediated_decay|CODING|ENST00000457308|15|1),INTRON(MODIFIER|||||DHX57|retained_intron|CODING|ENST00000460193|15|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:0:0:0:0,0:0,0:0,0:38,38	77:0:0:0:0,0:5,5:0,0:72,73
2	39559068	.	T	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||MAP4K3|nonsense_mediated_decay|CODING|ENST00000429397|4|1),NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|Aca/Gca|T111A|810|MAP4K3|protein_coding|CODING|ENST00000437545|8|1),NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|Aca/Gca|T174A|873|MAP4K3|protein_coding|CODING|ENST00000341681|8|1),NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|Aca/Gca|T174A|894|MAP4K3|protein_coding|CODING|ENST00000263881|8|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:1:0:0:0,0:0,0:0,0:33,34	76:0:0:0:0,0:5,5:0,0:71,72
2	40175133	.	T	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||SLC8A1-AS1|processed_transcript|NON_CODING|ENST00000418854|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	27:1:0:0:0,0:0,0:0,0:26,27	79:0:0:0:0,0:9,9:0,0:70,70
2	41918795	.	C	A	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	44:0:0:0:0,0:44,44:0,0:0,0	89:1:0:0:4,4:84,85:0,0:0,0
2	42222732	.	C	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	45:0:0:0:0,0:45,48:0,0:0,0	94:3:0:0:0,0:86,98:0,1:5,8
2	45254152	.	A	G	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	43:0:0:0:43,43:0,0:0,0:0,0	86:2:0:0:76,79:0,0:8,8:0,0
2	45572804	.	A	C	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:0:0:0:39,39:0,0:0,0:0,0	64:2:0:0:55,57:7,7:0,0:0,0
2	48562911	.	A	G	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||U4|snRNA|NON_CODING|ENST00000516080||1),INTRON(MODIFIER||||245|FOXN2|protein_coding|CODING|ENST00000413569|1|1),INTRON(MODIFIER||||431|FOXN2|protein_coding|CODING|ENST00000340553|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:3:0:0:31,35:0,0:0,0:0,0	80:0:0:0:70,70:1,1:9,9:0,0
2	48699256	.	A	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||PPP1R21|retained_intron|CODING|ENST00000460299||1),INTRON(MODIFIER||||738|PPP1R21|protein_coding|CODING|ENST00000449090|11|1),INTRON(MODIFIER||||769|PPP1R21|protein_coding|CODING|ENST00000281394|11|1),INTRON(MODIFIER||||780|PPP1R21|protein_coding|CODING|ENST00000294952|11|1),INTRON(MODIFIER|||||PPP1R21|nonsense_mediated_decay|CODING|ENST00000416913|11|1),INTRON(MODIFIER|||||PPP1R21|nonsense_mediated_decay|CODING|ENST00000431614|11|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:0:0:0:31,32:0,0:0,0:0,0	53:1:0:0:47,48:0,0:5,5:0,0
2	49582702	.	C	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	27:1:0:0:0,0:26,27:0,0:0,0	65:2:0:0:10,11:53,54:0,0:0,0
2	49602584	.	C	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:0:0:0:0,0:29,29:0,0:0,0	74:0:0:0:4,5:70,71:0,0:0,0
2	50246520	.	C	A	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1477|NRXN1|protein_coding|CODING|ENST00000406316|20|1),INTRON(MODIFIER||||1477|NRXN1|protein_coding|CODING|ENST00000406859|21|1),INTRON(MODIFIER||||1499|NRXN1|protein_coding|CODING|ENST00000402717|21|1),INTRON(MODIFIER||||1499|NRXN1|protein_coding|CODING|ENST00000405472|20|1),INTRON(MODIFIER||||1507|NRXN1|protein_coding|CODING|ENST00000401669|21|1),INTRON(MODIFIER||||1547|NRXN1|protein_coding|CODING|ENST00000404971|22|1),INTRON(MODIFIER||||442|NRXN1|protein_coding|CODING|ENST00000342183|4|1),INTRON(MODIFIER||||495|NRXN1|protein_coding|CODING|ENST00000401710|7|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:1:0:0:0,0:35,36:0,0:0,0	65:1:0:0:6,6:58,60:0,0:0,0
2	50419981	.	C	A	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1477|NRXN1|protein_coding|CODING|ENST00000406316|18|1),INTRON(MODIFIER||||1477|NRXN1|protein_coding|CODING|ENST00000406859|19|1),INTRON(MODIFIER||||1499|NRXN1|protein_coding|CODING|ENST00000402717|18|1),INTRON(MODIFIER||||1499|NRXN1|protein_coding|CODING|ENST00000405472|17|1),INTRON(MODIFIER||||1507|NRXN1|protein_coding|CODING|ENST00000401669|18|1),INTRON(MODIFIER||||1547|NRXN1|protein_coding|CODING|ENST00000404971|19|1),INTRON(MODIFIER||||442|NRXN1|protein_coding|CODING|ENST00000342183|2|1),INTRON(MODIFIER||||495|NRXN1|protein_coding|CODING|ENST00000401710|5|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:0:0:0:0,0:36,36:0,0:0,0	78:1:0:0:5,5:72,73:0,0:0,0
2	50977974	.	C	T	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1477|NRXN1|protein_coding|CODING|ENST00000406316|5|1),INTRON(MODIFIER||||1477|NRXN1|protein_coding|CODING|ENST00000406859|5|1),INTRON(MODIFIER||||1499|NRXN1|protein_coding|CODING|ENST00000402717|5|1),INTRON(MODIFIER||||1499|NRXN1|protein_coding|CODING|ENST00000405472|5|1),INTRON(MODIFIER||||1507|NRXN1|protein_coding|CODING|ENST00000401669|5|1),INTRON(MODIFIER||||1547|NRXN1|protein_coding|CODING|ENST00000404971|6|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	41:1:0:0:0,0:40,41:0,0:0,0	76:0:0:0:1,1:66,66:0,0:9,9
2	51139925	rs72823575	G	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||278|NRXN1|protein_coding|CODING|ENST00000405581||1),INTRON(MODIFIER||||1477|NRXN1|protein_coding|CODING|ENST00000406316|5|1),INTRON(MODIFIER||||1477|NRXN1|protein_coding|CODING|ENST00000406859|4|1),INTRON(MODIFIER||||1499|NRXN1|protein_coding|CODING|ENST00000402717|4|1),INTRON(MODIFIER||||1499|NRXN1|protein_coding|CODING|ENST00000405472|5|1),INTRON(MODIFIER||||1507|NRXN1|protein_coding|CODING|ENST00000401669|5|1),INTRON(MODIFIER||||1547|NRXN1|protein_coding|CODING|ENST00000404971|6|1);RSPOS=51139925;dbSNPBuildID=131;SSR=0;SAO=0;VP=050000080005000002000100;GENEINFO=NRXN1:9378;WGT=1;VC=SNV;INT;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:0:0:0:0,0:0,0:33,33:0,0	53:0:0:0:4,4:0,0:49,49:0,0
2	51811543	.	C	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||AC007682.1|processed_transcript|NON_CODING|ENST00000440698|5|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:1:0:0:0,0:34,36:0,0:0,0	79:0:0:0:0,0:72,73:0,0:7,7
2	54199624	.	G	A	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||AC008280.5|processed_transcript|NON_CODING|ENST00000422521|1|1),INTRON(MODIFIER|||||AC008280.5|processed_transcript|NON_CODING|ENST00000458030|1|1),UPSTREAM(MODIFIER||||1843|PSME4|protein_coding|CODING|ENST00000404125||1),UPSTREAM(MODIFIER|||||PSME4|nonsense_mediated_decay|CODING|ENST00000389993||1),UPSTREAM(MODIFIER|||||PSME4|processed_transcript|CODING|ENST00000481518||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:3:0:0:0,0:0,0:34,39:0,0	67:2:0:0:5,7:0,0:60,63:0,0
2	55803462	.	T	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||764|SMEK2|protein_coding|CODING|ENST00000272313|10|1),INTRON(MODIFIER||||817|SMEK2|protein_coding|CODING|ENST00000407823|10|1),INTRON(MODIFIER||||849|SMEK2|protein_coding|CODING|ENST00000345102|11|1),UPSTREAM(MODIFIER|||||SMEK2|processed_transcript|CODING|ENST00000482826||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:2:0:0:0,0:0,0:0,0:30,32	67:2:0:0:0,0:5,5:0,0:60,63
2	58102691	.	A	G	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:0:0:0:36,36:0,0:0,0:0,0	72:1:0:0:64,64:0,0:7,8:0,0
2	58219826	.	C	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||396|VRK2|protein_coding|CODING|ENST00000417641|1|1),INTRON(MODIFIER||||508|VRK2|protein_coding|CODING|ENST00000435505|1|1),INTRON(MODIFIER|||||VRK2|processed_transcript|CODING|ENST00000463222|1|1),INTRON(MODIFIER|||||VRK2|processed_transcript|CODING|ENST00000478687|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:2:0:0:0,0:32,35:0,0:0,0	65:3:0:0:0,0:57,61:0,0:5,6
2	58280781	.	A	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||396|VRK2|protein_coding|CODING|ENST00000412104|2|1),INTRON(MODIFIER||||396|VRK2|protein_coding|CODING|ENST00000417641|4|1),INTRON(MODIFIER||||485|VRK2|protein_coding|CODING|ENST00000440705|2|1),INTRON(MODIFIER||||508|VRK2|protein_coding|CODING|ENST00000340157|2|1),INTRON(MODIFIER||||508|VRK2|protein_coding|CODING|ENST00000435505|5|1),INTRON(MODIFIER||||81|VRK2|protein_coding|CODING|ENST00000428021|3|1),INTRON(MODIFIER|||||VRK2|nonsense_mediated_decay|CODING|ENST00000432057|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	28:1:0:0:27,28:0,0:0,0:0,0	73:1:0:0:63,63:0,0:0,0:9,9
2	58800503	.	G	C	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||AC007092.1|lincRNA|NON_CODING|ENST00000422723|2|1),INTRON(MODIFIER|||||AC007092.1|lincRNA|NON_CODING|ENST00000427421|1|1),INTRON(MODIFIER|||||AC007092.1|lincRNA|NON_CODING|ENST00000429095|2|1),INTRON(MODIFIER|||||AC007092.1|lincRNA|NON_CODING|ENST00000429664|1|1),INTRON(MODIFIER|||||AC007092.1|lincRNA|NON_CODING|ENST00000449448|1|1),INTRON(MODIFIER|||||AC007092.1|lincRNA|NON_CODING|ENST00000452840|2|1),INTRON(MODIFIER|||||AC007092.1|lincRNA|NON_CODING|ENST00000455219|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:1:0:0:0,0:0,0:34,35:0,0	82:1:0:0:0,1:6,6:75,75:0,0
2	59594332	.	A	C	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||AC007131.2|processed_transcript|NON_CODING|ENST00000412409|4|1),INTRON(MODIFIER|||||AC007131.2|processed_transcript|NON_CODING|ENST00000434611|1|1),INTRON(MODIFIER|||||AC007131.2|processed_transcript|NON_CODING|ENST00000444001|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:0:0:0:34,34:0,0:0,0:0,0	73:0:0:0:67,68:6,6:0,0:0,0
2	60189000	.	C	A	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:0:0:0:0,0:33,33:0,0:0,0	72:0:0:0:7,7:65,65:0,0:0,0
2	60300133	.	A	G	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:0:0:0:34,34:2,2:0,0:0,0	75:0:0:0:68,68:0,0:7,7:0,0
2	60606290	.	T	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||AC007381.2|lincRNA|NON_CODING|ENST00000441598|1|1),INTRON(MODIFIER|||||AC007381.2|lincRNA|NON_CODING|ENST00000453476|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:2:0:0:0,0:0,0:0,0:27,29	71:3:0:0:0,0:0,0:5,6:63,65
2	60606291	.	T	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||AC007381.2|lincRNA|NON_CODING|ENST00000441598|1|1),INTRON(MODIFIER|||||AC007381.2|lincRNA|NON_CODING|ENST00000453476|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:2:0:0:0,0:0,0:0,0:27,29	71:3:0:0:0,0:5,6:1,1:62,64
2	62494160	.	T	G	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=TT->GT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=DOWNSTREAM(MODIFIER|||||snoU13|snoRNA|NON_CODING|ENST00000459127||1),INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||Metazoa_SRP|misc_RNA|NON_CODING|ENST00000468230||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:1:0:0:0,0:0,0:1,2:27,27	44:0:2:0:0,0:1,1:12,12:31,31
2	62725501	.	A	G	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||198|TMEM17|protein_coding|CODING|ENST00000335390||1),DOWNSTREAM(MODIFIER|||||TMEM17|retained_intron|CODING|ENST00000479763||1),DOWNSTREAM(MODIFIER|||||TMEM17|retained_intron|CODING|ENST00000494919||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:0:0:0:30,30:0,0:0,0:0,0	68:4:0:0:56,63:0,0:8,9:0,0
2	62857799	.	A	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||AC092155.4|antisense|NON_CODING|ENST00000416111|3|1),INTRON(MODIFIER|||||AC092155.4|antisense|NON_CODING|ENST00000444672|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	27:0:0:0:27,28:0,0:0,0:0,0	89:3:0:0:79,87:1,1:1,1:5,5
2	65360468	.	G	C	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER||||129|RAB1A|protein_coding|CODING|ENST00000398529||1),UPSTREAM(MODIFIER||||141|RAB1A|protein_coding|CODING|ENST00000409892||1),UPSTREAM(MODIFIER||||173|RAB1A|protein_coding|CODING|ENST00000356214||1),UPSTREAM(MODIFIER||||173|RAB1A|protein_coding|CODING|ENST00000409751||1),UPSTREAM(MODIFIER||||205|RAB1A|protein_coding|CODING|ENST00000409784||1),UPSTREAM(MODIFIER|||||RAB1A|processed_transcript|CODING|ENST00000494188||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:1:0:0:0,0:0,0:37,38:0,0	66:0:0:0:0,0:7,7:59,60:0,0
2	65566057	.	A	G	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||115|SPRED2|protein_coding|CODING|ENST00000440972|3|1),INTRON(MODIFIER||||415|SPRED2|protein_coding|CODING|ENST00000443619|2|1),INTRON(MODIFIER||||418|SPRED2|protein_coding|CODING|ENST00000356388|2|1),INTRON(MODIFIER||||431|SPRED2|protein_coding|CODING|ENST00000452315|2|1),INTRON(MODIFIER|||||SPRED2|nonsense_mediated_decay|CODING|ENST00000426832|1|1),INTRON(MODIFIER|||||SPRED2|processed_transcript|CODING|ENST00000474228|2|1),UPSTREAM(MODIFIER||||232|SPRED2|protein_coding|CODING|ENST00000421087||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:3:0:0:34,47:0,1:0,1:0,0	104:4:0:0:95,122:0,1:5,11:0,0
2	67698516	.	G	A	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:0:0:0:0,0:0,0:34,35:0,0	74:0:0:0:6,6:0,0:68,68:0,0
2	70646767	rs6546605	A	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||AC022201.4|antisense|NON_CODING|ENST00000452525|3|1);RSPOS=70646767;GMAF=0.4217;dbSNPBuildID=116;SSR=0;SAO=0;VP=05010000000507011e000100;WGT=1;VC=SNV;SLO;ASP;VLD;G5A;G5;GNO;KGPhase1;KGPilot123;KGPROD;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:1:0:0:31,32:0,0:0,0:0,0	72:2:0:0:63,64:0,0:1,2:6,6
2	72306311	.	C	A	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:1:0:0:0,0:38,39:0,0:0,0	75:0:0:0:6,6:69,69:0,0:0,0
2	73520476	.	C	T	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=SYNONYMOUS_CODING(LOW|SILENT|agG/agA|R93|589|EGR4|protein_coding|CODING|ENST00000545030|1|1),UTR_5_PRIME(MODIFIER||||486|EGR4|protein_coding|CODING|ENST00000436467|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:0:0:0:0,0:38,38:0,0:0,0	91:1:0:0:0,0:81,82:0,0:9,9
2	74045741	.	T	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||922|C2orf78|protein_coding|CODING|ENST00000409561||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	42:1:0:0:0,0:0,0:0,0:41,43	74:2:0:0:0,0:0,0:14,16:58,58
2	76977217	.	G	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||590|LRRTM4|protein_coding|CODING|ENST00000409093|3|1),INTRON(MODIFIER||||590|LRRTM4|protein_coding|CODING|ENST00000409884|3|1),INTRON(MODIFIER||||591|LRRTM4|protein_coding|CODING|ENST00000409911|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:0:0:0:0,0:0,0:31,31:0,0	79:0:0:0:0,0:5,5:74,74:0,0
2	78189210	.	C	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:1:0:0:0,0:31,32:0,0:0,0	71:0:0:0:5,5:66,68:0,0:0,0
2	78224238	.	C	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	14:0:0:0:0,0:14,14:0,0:0,0	47:0:0:0:0,0:36,36:0,0:11,11
2	79290822	.	A	T	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	43:0:0:0:43,43:0,0:0,0:0,0	80:0:0:0:73,75:0,0:0,0:7,7
2	79338797	.	G	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:1:0:0:0,0:0,0:28,29:1,1	69:0:0:0:7,7:0,0:62,62:0,0
2	80722573	.	T	C	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||189|CTNNA2|protein_coding|CODING|ENST00000409550|3|1),INTRON(MODIFIER||||584|CTNNA2|protein_coding|CODING|ENST00000343114|3|1),INTRON(MODIFIER||||860|CTNNA2|protein_coding|CODING|ENST00000540488|8|1),INTRON(MODIFIER||||905|CTNNA2|protein_coding|CODING|ENST00000466387|13|1),INTRON(MODIFIER||||905|CTNNA2|protein_coding|CODING|ENST00000496558|9|1),INTRON(MODIFIER||||905|CTNNA2|protein_coding|CODING|ENST00000541047|8|1),INTRON(MODIFIER||||939|CTNNA2|protein_coding|CODING|ENST00000361291|9|1),INTRON(MODIFIER||||953|CTNNA2|protein_coding|CODING|ENST00000402739|8|1),INTRON(MODIFIER|||||CTNNA2|processed_transcript|CODING|ENST00000465616|3|1),INTRON(MODIFIER|||||CTNNA2|processed_transcript|CODING|ENST00000493024|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:0:0:0:0,0:0,0:1,1:31,31	68:0:0:0:0,0:9,9:0,0:59,59
2	82826180	.	G	T	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:0:0:0:0,0:0,0:38,38:0,0	65:0:0:0:0,0:0,0:59,60:6,6
2	82938762	.	T	G	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:1:0:0:0,0:0,0:0,0:39,40	71:0:0:0:0,0:0,0:8,8:63,63
2	83335225	.	A	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:0:0:0:30,30:0,0:0,0:0,0	70:0:0:0:61,61:9,9:0,0:0,0
2	84981551	.	A	T	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||DUXAP1|unprocessed_pseudogene|NON_CODING|ENST00000556632||1),INTRON(MODIFIER||||4158|DNAH6|protein_coding|CODING|ENST00000237449|62|1),INTRON(MODIFIER||||4158|DNAH6|protein_coding|CODING|ENST00000389394|63|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:0:0:0:37,37:0,0:0,0:0,0	77:0:0:0:69,69:0,0:0,0:8,8
2	85148530	.	G	A	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||AC022210.2|processed_pseudogene|NON_CODING|ENST00000449856||1),DOWNSTREAM(MODIFIER|||||AC022210.2|pseudogene|NON_CODING|ENST00000393863||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	41:0:0:0:0,0:0,0:41,44:0,0	75:1:0:0:5,5:0,0:69,71:0,0
2	85591951	.	T	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||119|ELMOD3|protein_coding|CODING|ENST00000418268|4|1),INTRON(MODIFIER||||201|ELMOD3|protein_coding|CODING|ENST00000409331|5|1),INTRON(MODIFIER||||254|ELMOD3|protein_coding|CODING|ENST00000428955|5|1),INTRON(MODIFIER||||381|ELMOD3|protein_coding|CODING|ENST00000393852|5|1),INTRON(MODIFIER||||381|ELMOD3|protein_coding|CODING|ENST00000409013|6|1),INTRON(MODIFIER||||381|ELMOD3|protein_coding|CODING|ENST00000409344|7|1),INTRON(MODIFIER||||381|ELMOD3|protein_coding|CODING|ENST00000409890|6|1),INTRON(MODIFIER||||391|ELMOD3|protein_coding|CODING|ENST00000315658|4|1),INTRON(MODIFIER||||96|ELMOD3|protein_coding|CODING|ENST00000462891|5|1),INTRON(MODIFIER|||||ELMOD3|nonsense_mediated_decay|CODING|ENST00000410106|3|1),INTRON(MODIFIER|||||ELMOD3|nonsense_mediated_decay|CODING|ENST00000414593|3|1),INTRON(MODIFIER|||||ELMOD3|nonsense_mediated_decay|CODING|ENST00000423095|5|1),INTRON(MODIFIER|||||ELMOD3|nonsense_mediated_decay|CODING|ENST00000429764|4|1),INTRON(MODIFIER|||||ELMOD3|nonsense_mediated_decay|CODING|ENST00000440462|2|1),INTRON(MODIFIER|||||ELMOD3|nonsense_mediated_decay|CODING|ENST00000444108|3|1),INTRON(MODIFIER|||||ELMOD3|nonsense_mediated_decay|CODING|ENST00000446464|4|1),INTRON(MODIFIER|||||ELMOD3|processed_transcript|CODING|ENST00000476734|4|1),INTRON(MODIFIER|||||ELMOD3|processed_transcript|CODING|ENST00000490508|4|1),INTRON(MODIFIER|||||ELMOD3|retained_intron|CODING|ENST00000488150|2|1),UPSTREAM(MODIFIER|||||Metazoa_SRP|misc_RNA|NON_CODING|ENST00000497900||1),UPSTREAM(MODIFIER|||||Y_RNA|misc_RNA|NON_CODING|ENST00000365512||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	23:1:0:0:0,0:0,1:0,0:22,23	64:3:2:0:9,10:0,0:0,0:52,55
2	85757779	.	T	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||Metazoa_SRP|misc_RNA|NON_CODING|ENST00000578841||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	43:0:0:0:0,0:0,0:1,1:42,42	69:2:0:0:0,0:0,0:7,8:60,63
2	85757798	.	G	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||Metazoa_SRP|misc_RNA|NON_CODING|ENST00000578841||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	42:2:0:0:0,0:0,0:40,44:0,0	72:3:0:0:0,0:5,6:64,68:0,0
2	86989902	.	A	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||391|RMND5A|protein_coding|CODING|ENST00000283632|4|1),UPSTREAM(MODIFIER|||||RMND5A|processed_transcript|CODING|ENST00000472843||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:0:0:0:39,39:0,0:0,0:0,0	72:3:0:0:64,66:0,0:5,6:0,0
2	87582085	.	G	A	.	PASS	NT=ref;QSS=28;QSS_NT=28;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||AC068279.4|pseudogene|NON_CODING|ENST00000453126||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	59:2:0:0:0,0:0,0:57,64:0,0	104:1:1:0:8,15:0,1:94,104:1,1
2	87628342	.	T	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	25:0:0:0:0,0:1,1:0,0:24,24	68:4:0:0:0,0:15,19:1,3:48,49
2	89330889	.	C	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||IGKV3-11|IG_V_gene|NON_CODING|ENST00000483158||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	26:0:0:0:0,0:26,27:0,0:0,0	57:0:0:0:7,7:50,50:0,0:0,0
2	89846376	.	C	T	.	PASS	NT=ref;QSS=33;QSS_NT=33;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	85:14:0:0:0,0:71,94:0,1:0,0	179:23:0:0:0,0:148,193:0,0:8,10
2	89866696	.	C	G	.	PASS	NT=ref;QSS=26;QSS_NT=26;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	76:18:40:0:0,1:57,253:0,15:1,19	175:45:66:0:0,3:113,473:9,47:8,36
2	89874973	.	C	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	83:7:2:0:2,3:72,133:2,4:0,1	187:21:0:0:1,3:153,259:10,20:2,5
2	90295472	rs147177004	T	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||AC113612.1|pseudogene|NON_CODING|ENST00000424815||1),UPSTREAM(MODIFIER|||||AC113612.2|pseudogene|NON_CODING|ENST00000419544||1);RSPOS=90295472;dbSNPBuildID=134;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:1:0:0:0,0:0,0:1,1:31,39	64:0:0:0:4,7:0,0:1,2:59,65
2	90460478	.	A	G	.	PASS	NT=ref;QSS=27;QSS_NT=27;SGT=AA->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	61:0:0:0:61,67:0,0:0,1:0,0	185:3:0:0:171,175:0,0:11,12:0,0
2	90462034	.	C	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	20:0:0:0:0,0:20,44:0,0:0,2	46:0:0:0:0,0:35,80:0,0:11,18
2	91629693	rs147715709	A	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=91629693;dbSNPBuildID=134;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	23:0:0:0:23,61:0,0:0,0:0,2	58:0:0:0:50,129:0,0:0,0:8,10
2	91671435	.	A	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	28:4:2:0:23,55:1,2:0,1:0,3	56:7:1:0:40,64:2,11:0,0:7,10
2	91817252	rs4004987	A	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=91817252;dbSNPBuildID=108;SSR=0;SAO=0;VP=050100000005000102000100;WGT=1;VC=SNV;SLO;ASP;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	95:1:56:0:93,95:0,0:0,0:1,1	175:0:112:0:166,166:1,1:0,0:8,8
2	91973143	.	A	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||GGT8P|unprocessed_pseudogene|NON_CODING|ENST00000418938||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	93:1:0:0:90,105:0,0:2,3:0,0	243:1:0:0:230,247:1,1:11,12:0,0
2	91975372	rs9711276	G	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=91975372;dbSNPBuildID=119;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	90:3:0:0:2,3:0,0:85,131:0,0	182:6:0:0:11,13:0,1:165,256:0,0
2	91980820	.	C	T	.	PASS	NT=ref;QSS=30;QSS_NT=30;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	79:2:0:0:0,2:76,91:0,0:1,1	173:4:0:0:1,2:156,198:0,0:12,17
2	92085572	.	G	C	.	PASS	NT=ref;QSS=26;QSS_NT=26;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||SLC9B1P2|unprocessed_pseudogene|NON_CODING|ENST00000398120|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	52:0:0:0:0,0:0,0:52,60:0,0	122:0:0:0:0,0:8,9:114,138:0,0
2	92085685	rs142790481	T	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER|||||SLC9B1P2|unprocessed_pseudogene|NON_CODING|ENST00000398120|3|1);RSPOS=92085685;dbSNPBuildID=134;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:0:0:0:0,0:0,1:0,0:39,39	80:0:0:0:0,0:6,9:0,0:74,82
2	92155738	.	T	G	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||CHEK2P3|unprocessed_pseudogene|NON_CODING|ENST00000416118||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:1:0:0:0,0:0,0:0,1:32,32	69:0:0:0:0,0:0,0:11,18:58,59
2	92155747	.	A	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||CHEK2P3|unprocessed_pseudogene|NON_CODING|ENST00000416118||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:1:0:0:29,30:1,1:0,0:0,0	70:0:0:0:57,57:12,20:0,0:1,1
2	92155777	rs77080916	G	A	.	PASS	NT=ref;QSS=26;QSS_NT=26;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||CHEK2P3|unprocessed_pseudogene|NON_CODING|ENST00000416118||1),INTERGENIC(MODIFIER||||||||||1);RSPOS=92155777;dbSNPBuildID=131;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:0:0:0:0,0:0,0:30,30:0,0	69:0:0:0:13,21:0,0:56,56:0,0
2	92170374	.	C	T	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	54:1:0:0:0,0:52,53:0,0:1,2	90:4:0:0:0,0:69,75:2,2:15,28
2	92170384	.	A	C	.	PASS	NT=ref;QSS=32;QSS_NT=32;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	56:0:0:0:55,55:1,2:0,0:0,0	89:6:0:0:64,67:18,33:1,1:0,0
2	92200750	rs78840891	C	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=92200750;dbSNPBuildID=131;SSR=0;SAO=0;VP=050000000009040102000100;WGT=1;VC=SNV;CFL;VLD;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	43:0:0:0:0,0:43,51:0,0:0,1	126:5:0:0:0,1:115,127:0,0:6,9
2	92238804	.	G	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	52:3:0:0:0,1:0,0:49,58:0,0	90:1:0:0:7,8:0,0:82,108:0,0
2	92241568	.	C	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->AC;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	64:4:11:0:0,3:60,106:0,0:0,0	107:3:9:0:6,12:98,204:0,0:0,1
2	92243766	.	T	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	74:0:0:0:1,1:0,0:0,0:73,90	127:1:0:0:11,16:1,1:0,0:114,157
2	92254064	.	C	T	.	PASS	NT=ref;QSS=23;QSS_NT=23;SGT=CC->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	84:1:0:0:1,2:82,115:0,1:0,3	204:3:0:0:0,0:188,251:0,0:13,18
2	92254107	.	A	C	.	PASS	NT=ref;QSS=36;QSS_NT=36;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	79:4:0:0:74,107:0,1:1,1:0,0	193:2:0:0:179,227:12,17:0,1:0,1
2	92275873	rs62147985	T	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=92275873;dbSNPBuildID=129;SSR=0;SAO=0;VP=050000000005000102000100;WGT=1;VC=SNV;ASP;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	28:1:0:0:0,0:0,0:0,0:27,47	97:6:0:0:0,2:0,0:7,24:84,155
2	92282668	.	A	G	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	61:5:0:0:56,88:0,0:0,0:0,1	132:11:0:0:113,195:0,1:8,9:0,0
2	92282795	rs199718935	T	C	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=TT->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=92282795;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	46:3:0:0:0,2:0,1:0,0:43,66	115:7:0:0:0,3:8,11:1,2:99,155
2	92285812	.	C	A	.	PASS	NT=ref;QSS=25;QSS_NT=25;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	94:4:0:0:1,3:89,121:0,0:0,0	190:8:0:0:8,13:174,234:0,0:0,0
2	92286431	.	T	G	.	PASS	NT=ref;QSS=36;QSS_NT=36;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	86:11:0:0:0,0:0,0:0,0:75,111	201:44:0:0:0,0:0,0:8,11:149,250
2	92287510	.	A	G	.	PASS	NT=ref;QSS=26;QSS_NT=26;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	57:5:0:0:51,86:0,0:0,2:1,1	142:10:0:0:124,184:0,0:8,11:0,0
2	92302859	.	G	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:1:0:0:0,1:1,1:31,43:0,0	93:4:0:0:8,12:0,1:81,98:0,0
2	92302861	.	A	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AC;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:1:0:0:32,44:0,1:0,0:0,0	96:6:0:0:82,100:8,14:0,0:0,0
2	92302885	.	C	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:1:0:0:0,0:31,44:0,0:0,1	98:7:0:0:0,0:84,101:0,0:7,18
2	92302915	.	C	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:5:0:0:0,0:29,48:0,0:0,1	112:12:0:0:0,0:94,116:0,0:6,17
2	92302937	.	T	C	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:0:0:0:0,0:0,0:0,0:35,49	107:2:0:0:0,0:9,15:1,1:95,111
2	92302939	.	G	C	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:0:0:0:0,0:0,0:35,48:0,1	109:2:0:0:0,0:9,15:98,114:0,0
2	95525480	rs78687836	C	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||ANKRD20A8P|processed_transcript|NON_CODING|ENST00000432432||1),UPSTREAM(MODIFIER|||||ANKRD20A8P|transcribed_unprocessed_pseudogene|NON_CODING|ENST00000446135||1);RSPOS=95525480;dbSNPBuildID=131;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:1:0:0:0,0:29,30:0,0:0,0	67:0:0:0:0,0:62,64:0,0:5,7
2	95572425	.	G	A	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||AC097374.2|antisense|NON_CODING|ENST00000568768|5|1),INTRON(MODIFIER|||||AC097374.2|antisense|NON_CODING|ENST00000582835|5|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:0:0:0:0,0:0,0:35,35:0,0	69:0:0:0:5,5:0,0:64,64:0,0
2	96627001	.	G	A	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1778|ANKRD36C|protein_coding|CODING|ENST00000456556|8|1),INTRON(MODIFIER|||||ANKRD36C|nonsense_mediated_decay|CODING|ENST00000528268|8|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:0:0:0:0,0:0,1:36,36:0,0	90:8:0:0:9,17:0,0:73,74:0,0
2	97859632	.	G	C	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1941|ANKRD36|protein_coding|CODING|ENST00000420699|38|1),INTRON(MODIFIER||||1941|ANKRD36|protein_coding|CODING|ENST00000461153|38|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	42:0:0:0:0,0:0,0:42,42:0,0	77:3:0:0:1,1:6,7:67,69:0,0
2	98585281	.	C	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1883|TMEM131|protein_coding|CODING|ENST00000186436|1|1),INTRON(MODIFIER||||322|TMEM131|protein_coding|CODING|ENST00000425805|2|1),INTRON(MODIFIER|||||TMEM131|retained_intron|CODING|ENST00000489507|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:0:0:0:0,0:33,33:0,0:0,0	70:0:0:0:0,0:64,64:0,0:6,6
2	98920947	.	A	G	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1294|VWA3B|protein_coding|CODING|ENST00000477737|26|1),INTRON(MODIFIER|||||VWA3B|nonsense_mediated_decay|CODING|ENST00000432242|27|1),INTRON(MODIFIER|||||VWA3B|processed_transcript|CODING|ENST00000490947|8|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:0:0:0:35,35:0,1:0,0:0,0	66:1:0:0:60,61:0,0:5,5:0,0
2	100503263	.	G	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1226|AFF3|protein_coding|CODING|ENST00000317233|6|1),INTRON(MODIFIER||||1226|AFF3|protein_coding|CODING|ENST00000409236|5|1),INTRON(MODIFIER||||1251|AFF3|protein_coding|CODING|ENST00000356421|6|1),INTRON(MODIFIER||||1251|AFF3|protein_coding|CODING|ENST00000409579|7|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:0:0:0:0,0:0,0:30,30:0,0	80:0:0:0:0,0:0,0:75,75:5,5
2	100729824	.	G	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1226|AFF3|protein_coding|CODING|ENST00000317233|1|1),INTRON(MODIFIER||||154|AFF3|protein_coding|CODING|ENST00000423966|1|1),INTRON(MODIFIER||||98|AFF3|protein_coding|CODING|ENST00000416492|2|1),INTRON(MODIFIER|||||AFF3|processed_transcript|CODING|ENST00000483600|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:1:0:0:0,0:0,0:32,33:0,0	67:1:0:0:5,5:0,0:61,62:0,0
2	102195078	.	G	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:4:0:0:0,1:0,0:31,35:0,0	81:4:0:0:0,0:0,0:72,76:5,5
2	102195084	.	C	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:4:0:0:0,0:31,36:0,0:0,0	81:4:0:0:1,2:70,72:0,1:6,6
2	102929490	.	T	G	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||211|IL1RL1|protein_coding|CODING|ENST00000404917|1|1),INTRON(MODIFIER||||259|IL1RL1|protein_coding|CODING|ENST00000393393|1|1),INTRON(MODIFIER||||541|IL18R1|protein_coding|CODING|ENST00000410040|1|1),INTRON(MODIFIER||||556|IL1RL1|protein_coding|CODING|ENST00000233954|1|1),INTRON(MODIFIER|||||IL1RL1|processed_transcript|CODING|ENST00000473175|1|1),START_GAINED(LOW||||37|IL1RL1|protein_coding|CODING|ENST00000447231|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:0:0:0:0,0:0,0:0,0:36,36	76:0:0:0:0,0:0,0:7,7:69,69
2	103589809	.	C	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||AC108051.1|lincRNA|NON_CODING|ENST00000431897|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:0:0:0:0,0:35,35:0,0:0,0	81:0:0:0:0,0:76,76:0,0:5,5
2	104195137	.	A	T	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	41:0:0:0:41,41:0,0:0,0:0,0	61:0:0:0:56,56:0,0:0,0:5,5
2	104195156	.	C	T	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	43:0:0:0:0,0:43,43:0,0:0,0	65:0:0:0:0,0:59,59:0,0:6,6
2	105196905	.	T	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||AC013402.4|lincRNA|NON_CODING|ENST00000424257||1),INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||AC013402.3|lincRNA|NON_CODING|ENST00000438566||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	26:1:0:0:0,0:0,0:0,0:25,26	71:0:0:0:0,0:0,0:10,10:61,61
2	105867593	rs189795233	G	A	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=105867593;GMAF=0.0179;dbSNPBuildID=135;SSR=0;SAO=0;VP=050000000005000014000100;WGT=1;VC=SNV;ASP;KGPhase1;KGPROD	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	41:3:0:0:0,0:0,0:37,41:1,1	87:3:0:0:6,6:0,2:77,80:1,1
2	106095584	.	G	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:1:0:0:0,0:0,0:28,29:0,0	73:1:0:0:8,8:0,0:64,65:0,0
2	107155188	.	A	T	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||AC108868.5|lincRNA|NON_CODING|ENST00000431411||1),UPSTREAM(MODIFIER|||||AC108868.6|lincRNA|NON_CODING|ENST00000451464||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:0:0:0:31,31:0,0:0,0:0,0	63:1:0:0:53,53:0,1:0,0:9,9
2	109338510	.	C	G	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||2248|RANBP2|protein_coding|CODING|ENST00000409491|1|1),INTRON(MODIFIER||||3224|RANBP2|protein_coding|CODING|ENST00000283195|1|1),INTRON(MODIFIER||||55|RANBP2|protein_coding|CODING|ENST00000456637|1|1),INTRON(MODIFIER|||||RANBP2|nonsense_mediated_decay|CODING|ENST00000425282|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:0:0:0:1,1:32,33:0,0:0,0	69:3:0:0:1,1:60,63:5,6:0,0
2	109523252	.	C	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||448|EDAR|protein_coding|CODING|ENST00000258443|10|1),INTRON(MODIFIER||||480|EDAR|protein_coding|CODING|ENST00000376651|9|1),INTRON(MODIFIER||||480|EDAR|protein_coding|CODING|ENST00000409271|10|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	28:1:0:0:0,0:27,28:0,0:0,0	88:0:0:0:7,7:81,81:0,0:0,0
2	110077861	.	A	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||882|SH3RF3|protein_coding|CODING|ENST00000309415|8|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:0:0:0:31,35:1,1:1,1:0,0	58:1:0:0:47,50:0,0:10,10:0,0
2	111438710	.	T	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=TT->AT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER||||1028|BUB1|protein_coding|CODING|ENST00000409311||1),UPSTREAM(MODIFIER||||1065|BUB1|protein_coding|CODING|ENST00000535254||1),UPSTREAM(MODIFIER||||1085|BUB1|protein_coding|CODING|ENST00000302759||1),UPSTREAM(MODIFIER||||133|BUB1|protein_coding|CODING|ENST00000420328||1),UPSTREAM(MODIFIER||||145|BUB1|protein_coding|CODING|ENST00000447014||1),UPSTREAM(MODIFIER|||||BUB1|retained_intron|CODING|ENST00000465029||1),UPSTREAM(MODIFIER|||||BUB1|retained_intron|CODING|ENST00000466333||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:1:0:0:0,0:0,0:0,1:36,36	56:0:0:0:5,5:0,0:0,0:51,53
2	112190575	.	G	A	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||AC068491.1|processed_transcript|NON_CODING|ENST00000308604|2|1),INTRON(MODIFIER|||||AC068491.1|processed_transcript|NON_CODING|ENST00000409569|1|1),INTRON(MODIFIER|||||AC068491.1|processed_transcript|NON_CODING|ENST00000419736|3|1),INTRON(MODIFIER|||||AC068491.1|processed_transcript|NON_CODING|ENST00000424851|3|1),INTRON(MODIFIER|||||AC068491.1|processed_transcript|NON_CODING|ENST00000431385|1|1),INTRON(MODIFIER|||||AC068491.1|processed_transcript|NON_CODING|ENST00000432818|1|1),INTRON(MODIFIER|||||AC068491.1|processed_transcript|NON_CODING|ENST00000433198|1|1),INTRON(MODIFIER|||||AC068491.1|processed_transcript|NON_CODING|ENST00000439362|1|1),INTRON(MODIFIER|||||AC068491.1|processed_transcript|NON_CODING|ENST00000441075|2|1),INTRON(MODIFIER|||||AC068491.1|processed_transcript|NON_CODING|ENST00000442293|2|1),INTRON(MODIFIER|||||AC068491.1|processed_transcript|NON_CODING|ENST00000443467|1|1),INTRON(MODIFIER|||||AC068491.1|processed_transcript|NON_CODING|ENST00000444301|1|1),INTRON(MODIFIER|||||AC068491.1|processed_transcript|NON_CODING|ENST00000453478|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:0:0:0:1,1:0,0:30,30:0,0	50:1:0:0:11,13:0,0:38,41:0,0
2	112359293	rs79053195	G	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=112359293;dbSNPBuildID=131;SSR=0;SAO=0;VP=050000000001040102000100;WGT=1;VC=SNV;VLD;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:0:0:0:0,0:0,0:35,35:0,0	80:1:0:0:0,0:0,0:72,73:7,12
2	112577999	.	G	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER||||1944|ANAPC1|protein_coding|CODING|ENST00000341068|26|1),INTRON(MODIFIER|||||ANAPC1|retained_intron|CODING|ENST00000485325|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	26:0:0:0:0,1:0,0:26,26:0,0	51:0:0:0:8,9:0,0:43,45:0,0
2	114149788	.	G	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	28:0:0:0:0,0:0,0:28,28:0,0	57:0:0:0:0,0:0,0:52,59:5,6
2	114267879	.	C	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||AL078621.3|lincRNA|NON_CODING|ENST00000449954||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:0:0:0:0,0:36,36:0,0:0,0	79:1:0:0:0,0:72,74:0,0:6,7
2	114356414	.	A	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=DOWNSTREAM(MODIFIER|||||DDX11L2|unprocessed_pseudogene|NON_CODING|ENST00000437401||1),DOWNSTREAM(MODIFIER|||||DDX11L2|unprocessed_pseudogene|NON_CODING|ENST00000457993||1),DOWNSTREAM(MODIFIER|||||DDX11L2|unprocessed_pseudogene|NON_CODING|ENST00000535848||1),DOWNSTREAM(MODIFIER|||||WASH2P|unprocessed_pseudogene|NON_CODING|ENST00000542901||1),EXON(MODIFIER|||||WASH2P|unprocessed_pseudogene|NON_CODING|ENST00000326632|11|1),EXON(MODIFIER|||||WASH2P|unprocessed_pseudogene|NON_CODING|ENST00000453662|10|1),EXON(MODIFIER|||||WASH2P|unprocessed_pseudogene|NON_CODING|ENST00000538033|10|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:2:0:0:33,47:0,0:0,0:0,1	74:0:0:0:66,89:1,1:0,0:7,11
2	114356439	rs1045809	T	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||DDX11L2|unprocessed_pseudogene|NON_CODING|ENST00000437401||1),DOWNSTREAM(MODIFIER|||||DDX11L2|unprocessed_pseudogene|NON_CODING|ENST00000457993||1),DOWNSTREAM(MODIFIER|||||DDX11L2|unprocessed_pseudogene|NON_CODING|ENST00000535848||1),DOWNSTREAM(MODIFIER|||||WASH2P|unprocessed_pseudogene|NON_CODING|ENST00000542901||1),EXON(MODIFIER|||||WASH2P|unprocessed_pseudogene|NON_CODING|ENST00000326632|11|1),EXON(MODIFIER|||||WASH2P|unprocessed_pseudogene|NON_CODING|ENST00000453662|10|1),EXON(MODIFIER|||||WASH2P|unprocessed_pseudogene|NON_CODING|ENST00000538033|10|1);RSPOS=114356439;dbSNPBuildID=86;SSR=0;SAO=0;VP=050100000209000002000100;GENEINFO=LOC100288778:100288778|WASH2P:375260;WGT=1;VC=SNV;SLO;REF;CFL;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:1:0:0:0,0:0,0:0,0:29,41	71:0:0:0:0,0:7,9:0,0:64,86
2	115426462	.	T	G	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||59|DPP10|protein_coding|CODING|ENST00000436732|1|1),INTRON(MODIFIER||||746|DPP10|protein_coding|CODING|ENST00000409163|2|1),INTRON(MODIFIER||||796|DPP10|protein_coding|CODING|ENST00000410059|1|1),INTRON(MODIFIER|||||DPP10|retained_intron|CODING|ENST00000461250|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:0:0:0:0,0:0,0:0,0:35,35	72:1:0:0:0,0:0,0:5,5:66,67
2	115561290	.	T	A	.	PASS	NT=ref;QSS=24;QSS_NT=24;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||59|DPP10|protein_coding|CODING|ENST00000436732|1|1),INTRON(MODIFIER||||746|DPP10|protein_coding|CODING|ENST00000409163|2|1),INTRON(MODIFIER||||796|DPP10|protein_coding|CODING|ENST00000410059|1|1),INTRON(MODIFIER|||||DPP10|retained_intron|CODING|ENST00000461250|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	45:0:0:0:0,0:0,0:0,0:45,45	80:1:0:0:10,10:0,0:0,0:69,70
2	116114182	.	G	C	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||257|DPP10|protein_coding|CODING|ENST00000393146|3|1),INTRON(MODIFIER||||59|DPP10|protein_coding|CODING|ENST00000436732|4|1),INTRON(MODIFIER||||746|DPP10|protein_coding|CODING|ENST00000409163|4|1),INTRON(MODIFIER||||789|DPP10|protein_coding|CODING|ENST00000310323|3|1),INTRON(MODIFIER||||796|DPP10|protein_coding|CODING|ENST00000410059|3|1),INTRON(MODIFIER||||800|DPP10|protein_coding|CODING|ENST00000393147|3|1),INTRON(MODIFIER||||96|DPP10|protein_coding|CODING|ENST00000419287|3|1),INTRON(MODIFIER|||||DPP10|nonsense_mediated_decay|CODING|ENST00000429914|2|1),INTRON(MODIFIER|||||DPP10|retained_intron|CODING|ENST00000461250|5|1),INTRON(MODIFIER|||||DPP10|retained_intron|CODING|ENST00000486885|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:1:0:0:0,0:0,0:31,32:0,0	53:1:0:0:0,0:7,8:45,45:0,0
2	116282509	.	T	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||257|DPP10|protein_coding|CODING|ENST00000393146|4|1),INTRON(MODIFIER||||746|DPP10|protein_coding|CODING|ENST00000409163|5|1),INTRON(MODIFIER||||789|DPP10|protein_coding|CODING|ENST00000310323|4|1),INTRON(MODIFIER||||796|DPP10|protein_coding|CODING|ENST00000410059|4|1),INTRON(MODIFIER||||800|DPP10|protein_coding|CODING|ENST00000393147|4|1),INTRON(MODIFIER||||96|DPP10|protein_coding|CODING|ENST00000419287|4|1),INTRON(MODIFIER|||||DPP10|nonsense_mediated_decay|CODING|ENST00000429914|3|1),INTRON(MODIFIER|||||DPP10|processed_transcript|CODING|ENST00000488208|2|1),INTRON(MODIFIER|||||DPP10|retained_intron|CODING|ENST00000461250|6|1),INTRON(MODIFIER|||||DPP10|retained_intron|CODING|ENST00000486885|4|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:1:0:0:0,0:0,0:0,0:33,35	57:1:0:0:0,0:4,4:0,0:52,53
2	121149121	.	A	C	.	PASS	NT=ref;QSS=27;QSS_NT=27;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	93:4:0:0:87,137:2,4:0,0:0,0	211:14:0:0:186,265:11,18:0,0:0,1
2	121723213	.	A	G	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1586|GLI2|protein_coding|CODING|ENST00000361492|4|1),INTRON(MODIFIER||||1586|GLI2|protein_coding|CODING|ENST00000452319|5|1),INTRON(MODIFIER||||175|GLI2|protein_coding|CODING|ENST00000360874|2|1),INTRON(MODIFIER||||829|GLI2|protein_coding|CODING|ENST00000314490|4|1),INTRON(MODIFIER|||||GLI2|nonsense_mediated_decay|CODING|ENST00000341310|2|1),INTRON(MODIFIER|||||GLI2|nonsense_mediated_decay|CODING|ENST00000433812|3|1),INTRON(MODIFIER|||||GLI2|nonsense_mediated_decay|CODING|ENST00000437950|1|1),INTRON(MODIFIER|||||GLI2|nonsense_mediated_decay|CODING|ENST00000438299|2|1),INTRON(MODIFIER|||||GLI2|nonsense_mediated_decay|CODING|ENST00000445186|2|1),INTRON(MODIFIER|||||GLI2|nonsense_mediated_decay|CODING|ENST00000452692|2|1),INTRON(MODIFIER|||||GLI2|processed_transcript|CODING|ENST00000435313|4|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:0:0:0:32,36:2,2:0,0:0,0	72:4:0:0:61,72:1,1:6,6:0,0
2	121723254	.	C	G	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1586|GLI2|protein_coding|CODING|ENST00000361492|4|1),INTRON(MODIFIER||||1586|GLI2|protein_coding|CODING|ENST00000452319|5|1),INTRON(MODIFIER||||175|GLI2|protein_coding|CODING|ENST00000360874|2|1),INTRON(MODIFIER||||829|GLI2|protein_coding|CODING|ENST00000314490|4|1),INTRON(MODIFIER|||||GLI2|nonsense_mediated_decay|CODING|ENST00000341310|2|1),INTRON(MODIFIER|||||GLI2|nonsense_mediated_decay|CODING|ENST00000433812|3|1),INTRON(MODIFIER|||||GLI2|nonsense_mediated_decay|CODING|ENST00000437950|1|1),INTRON(MODIFIER|||||GLI2|nonsense_mediated_decay|CODING|ENST00000438299|2|1),INTRON(MODIFIER|||||GLI2|nonsense_mediated_decay|CODING|ENST00000445186|2|1),INTRON(MODIFIER|||||GLI2|nonsense_mediated_decay|CODING|ENST00000452692|2|1),INTRON(MODIFIER|||||GLI2|processed_transcript|CODING|ENST00000435313|4|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	45:0:0:0:0,0:45,48:0,0:0,0	87:1:0:0:0,0:82,83:4,4:0,0
2	122723609	.	C	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	27:0:0:0:0,0:27,27:0,0:0,0	61:2:0:0:0,0:54,56:1,1:4,4
2	124815158	.	C	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1306|CNTNAP5|protein_coding|CODING|ENST00000431078|1|1),INTRON(MODIFIER|||||CNTNAP5|processed_transcript|CODING|ENST00000423939|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:0:0:0:0,0:31,31:0,0:0,0	64:1:0:0:5,5:58,59:0,0:0,0
2	125568105	.	G	A	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1306|CNTNAP5|protein_coding|CODING|ENST00000431078|19|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:1:0:0:0,0:0,0:38,39:0,0	66:0:0:0:7,7:0,0:59,59:0,0
2	126421882	.	T	C	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:0:0:0:0,0:0,0:0,0:35,35	76:2:0:0:0,0:6,6:0,0:68,70
2	129175901	.	G	A	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=GG->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:5:0:0:0,1:0,2:29,43:0,0	52:7:0:0:10,11:0,0:35,64:0,0
2	129267490	.	C	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:1:0:0:0,0:28,29:0,0:0,0	70:0:0:0:0,0:65,66:5,5:0,0
2	129840937	.	C	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:0:0:0:0,0:31,31:0,0:0,0	80:1:0:0:0,0:75,76:4,5:0,0
2	131520223	.	C	A	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||140|FAM123C|protein_coding|CODING|ENST00000431758||1),DOWNSTREAM(MODIFIER||||179|FAM123C|protein_coding|CODING|ENST00000458606||1),NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|cCt/cAt|P193H|861|FAM123C|protein_coding|CODING|ENST00000321420|2|1),NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|cCt/cAt|P193H|861|FAM123C|protein_coding|CODING|ENST00000423981|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:0:0:0:0,0:33,33:0,0:0,0	73:2:0:0:6,6:65,67:0,0:0,0
2	131605194	.	C	A	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1014|ARHGEF4|protein_coding|CODING|ENST00000409359|1|1),INTRON(MODIFIER|||||ARHGEF4|processed_transcript|CODING|ENST00000526381|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:0:0:0:0,0:38,38:0,0:0,0	76:2:0:0:5,6:69,69:0,0:0,0
2	131721484	rs140692734	C	G	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||192|ARHGEF4|protein_coding|CODING|ENST00000428230|3|1),INTRON(MODIFIER||||372|ARHGEF4|protein_coding|CODING|ENST00000438985|3|1),INTRON(MODIFIER||||630|ARHGEF4|protein_coding|CODING|ENST00000409303|2|1),INTRON(MODIFIER||||670|ARHGEF4|protein_coding|CODING|ENST00000392953|4|1),INTRON(MODIFIER||||670|ARHGEF4|protein_coding|CODING|ENST00000525839|3|1),INTRON(MODIFIER||||690|ARHGEF4|protein_coding|CODING|ENST00000326016|4|1);RSPOS=131721484;GMAF=0.2711;dbSNPBuildID=134;SSR=0;SAO=0;VP=050000080005000014000100;GENEINFO=ARHGEF4:50649;WGT=1;VC=SNV;INT;ASP;KGPhase1;KGPROD	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:0:0:0:0,0:34,34:0,0:0,0	48:0:0:0:0,0:43,43:5,5:0,0
2	131801724	.	A	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||195|FAM168B|protein_coding|CODING|ENST00000409185||1),DOWNSTREAM(MODIFIER|||||ARHGEF4|processed_transcript|CODING|ENST00000439368||1),DOWNSTREAM(MODIFIER|||||ARHGEF4|processed_transcript|CODING|ENST00000496764||1),DOWNSTREAM(MODIFIER|||||ARHGEF4|processed_transcript|CODING|ENST00000528247||1),DOWNSTREAM(MODIFIER|||||ARHGEF4|retained_intron|CODING|ENST00000527365||1),INTRON(MODIFIER||||192|ARHGEF4|protein_coding|CODING|ENST00000428230|3|1),INTRON(MODIFIER||||372|ARHGEF4|protein_coding|CODING|ENST00000438985|3|1),INTRON(MODIFIER||||619|ARHGEF4|protein_coding|CODING|ENST00000355771|8|1),INTRON(MODIFIER||||630|ARHGEF4|protein_coding|CODING|ENST00000409303|8|1),INTRON(MODIFIER||||670|ARHGEF4|protein_coding|CODING|ENST00000392953|11|1),INTRON(MODIFIER||||670|ARHGEF4|protein_coding|CODING|ENST00000525839|10|1),INTRON(MODIFIER||||690|ARHGEF4|protein_coding|CODING|ENST00000326016|11|1),INTRON(MODIFIER|||||ARHGEF4|retained_intron|CODING|ENST00000490728|4|1),INTRON(MODIFIER|||||ARHGEF4|retained_intron|CODING|ENST00000525092|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:1:0:0:28,29:0,0:0,0:0,0	83:3:0:0:72,74:8,9:0,0:0,0
2	131997389	.	G	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1075|AC131180.1|protein_coding|CODING|ENST00000356920|9|1),INTRON(MODIFIER||||309|PLEKHB2|protein_coding|CODING|ENST00000303908|5|1),INTRON(MODIFIER||||309|PLEKHB2|protein_coding|CODING|ENST00000404460|6|1),INTRON(MODIFIER||||394|AC131180.1|protein_coding|CODING|ENST00000358087|8|1),INTRON(MODIFIER|||||POTEE|unprocessed_pseudogene|NON_CODING|ENST00000514256|10|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	44:0:0:0:1,1:0,0:43,51:0,0	124:2:0:0:15,20:0,0:107,119:0,0
2	132042741	.	G	C	.	PASS	NT=ref;QSS=27;QSS_NT=27;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||309|PLEKHB2|protein_coding|CODING|ENST00000303908|5|1),INTRON(MODIFIER||||309|PLEKHB2|protein_coding|CODING|ENST00000404460|6|1),UPSTREAM(MODIFIER||||118|CYP4F31P|protein_coding|CODING|ENST00000416266||1),UPSTREAM(MODIFIER|||||AC131180.4|processed_transcript|NON_CODING|ENST00000560285||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	26:1:0:0:0,0:0,0:25,26:0,0	46:0:0:0:0,0:11,13:35,37:0,0
2	132042756	.	C	T	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||309|PLEKHB2|protein_coding|CODING|ENST00000303908|5|1),INTRON(MODIFIER||||309|PLEKHB2|protein_coding|CODING|ENST00000404460|6|1),UPSTREAM(MODIFIER||||118|CYP4F31P|protein_coding|CODING|ENST00000416266||1),UPSTREAM(MODIFIER|||||AC131180.4|processed_transcript|NON_CODING|ENST00000560285||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	26:0:0:0:0,0:26,26:0,0:0,0	41:0:0:0:0,0:33,34:0,0:8,10
2	132294004	rs62179009	G	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||205|CCDC74A|protein_coding|CODING|ENST00000434330||1),DOWNSTREAM(MODIFIER||||312|CCDC74A|protein_coding|CODING|ENST00000409856||1),DOWNSTREAM(MODIFIER||||330|CCDC74A|protein_coding|CODING|ENST00000467992||1),DOWNSTREAM(MODIFIER||||378|CCDC74A|protein_coding|CODING|ENST00000295171||1),INTRON(MODIFIER|||||AC093838.5|unprocessed_pseudogene|NON_CODING|ENST00000417579|2|1);RSPOS=132294004;dbSNPBuildID=129;SSR=0;SAO=0;VP=050000000005000102000100;WGT=1;VC=SNV;ASP;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:0:0:0:0,0:0,0:34,34:0,0	94:0:0:0:6,7:0,0:88,88:0,0
2	132294022	rs62179010	G	A	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||205|CCDC74A|protein_coding|CODING|ENST00000434330||1),DOWNSTREAM(MODIFIER||||312|CCDC74A|protein_coding|CODING|ENST00000409856||1),DOWNSTREAM(MODIFIER||||330|CCDC74A|protein_coding|CODING|ENST00000467992||1),DOWNSTREAM(MODIFIER||||378|CCDC74A|protein_coding|CODING|ENST00000295171||1),INTRON(MODIFIER|||||AC093838.5|unprocessed_pseudogene|NON_CODING|ENST00000417579|2|1);RSPOS=132294022;dbSNPBuildID=129;SSR=0;SAO=0;VP=050000000001000102000100;WGT=1;VC=SNV;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:0:0:0:0,0:0,0:40,40:0,0	91:0:0:0:5,6:0,0:86,86:0,0
2	132349363	.	T	C	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=EXON(MODIFIER|||||POTEKP|unprocessed_pseudogene|NON_CODING|ENST00000397487|1|1),EXON(MODIFIER|||||POTEKP|unprocessed_pseudogene|NON_CODING|ENST00000420985|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:0:0:0:0,0:0,0:1,1:37,38	84:0:0:0:0,0:6,6:2,2:76,76
2	132512834	.	C	T	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||C2orf27A|processed_transcript|CODING|ENST00000463645||1),DOWNSTREAM(MODIFIER|||||C2orf27A|processed_transcript|CODING|ENST00000466372||1),DOWNSTREAM(MODIFIER|||||C2orf27A|processed_transcript|CODING|ENST00000472358||1),INTRON(MODIFIER||||203|C2orf27A|protein_coding|CODING|ENST00000355171|3|1),UPSTREAM(MODIFIER|||||C2orf27A|processed_transcript|CODING|ENST00000481510||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:2:0:0:0,0:37,40:0,0:0,0	77:3:0:0:0,0:69,76:0,0:5,5
2	132572112	.	A	G	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	27:0:0:0:27,29:0,0:0,1:0,0	50:1:0:0:42,52:0,0:7,14:0,0
2	132663061	.	G	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	27:1:0:0:0,0:0,0:26,27:0,0	55:1:0:0:5,5:0,0:49,50:0,0
2	132741963	.	G	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP1-156L9.1|lincRNA|NON_CODING|ENST00000419784|1|1),UPSTREAM(MODIFIER|||||AJ239322.1|lincRNA|NON_CODING|ENST00000419362||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	26:0:0:0:0,0:0,0:26,26:0,0	78:0:0:0:0,0:0,0:70,70:8,8
2	132768911	.	T	A	.	PASS	NT=ref;QSS=26;QSS_NT=26;SGT=TT->AT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	55:0:0:0:0,1:0,0:1,1:54,62	147:1:0:0:7,9:0,0:0,0:139,150
2	132771386	.	G	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:2:0:0:0,1:0,0:36,48:0,0	102:5:0:0:6,7:0,0:91,107:0,1
2	132780941	rs62161084	G	A	.	PASS	NT=ref;QSS=28;QSS_NT=28;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=132780941;dbSNPBuildID=129;SSR=1;SAO=0;VP=050000000005000002000140;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	56:0:0:0:0,0:0,0:56,66:0,0	111:2:0:0:8,13:0,0:99,112:2,3
2	132796346	.	C	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->AC;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||AC093787.1|processed_pseudogene|NON_CODING|ENST00000450396||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	64:13:0:0:0,2:51,133:0,0:0,0	128:6:0:0:5,11:117,234:0,0:0,0
2	132796779	.	C	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||AC093787.1|processed_pseudogene|NON_CODING|ENST00000450396||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:2:0:0:0,0:32,38:0,0:0,0	81:0:0:0:1,2:74,78:0,0:6,7
2	132796780	.	C	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||AC093787.1|processed_pseudogene|NON_CODING|ENST00000450396||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:2:0:0:0,0:32,38:0,0:0,0	79:2:0:0:6,7:71,78:0,0:0,0
2	132796949	rs200587131	A	G	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||AC093787.1|processed_pseudogene|NON_CODING|ENST00000450396||1);RSPOS=132796949;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:0:0:0:33,34:0,0:0,0:0,0	94:3:0:0:84,88:0,0:7,11:0,0
2	132828560	.	C	T	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=CC->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	55:6:0:0:0,0:49,77:0,0:0,1	108:16:0:0:0,0:86,150:0,2:6,6
2	132828573	.	T	C	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=TT->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	61:4:0:0:0,0:1,4:0,0:56,79	112:1:0:0:0,0:7,7:1,1:103,155
2	132839844	.	G	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:0:0:0:0,0:0,0:30,30:0,0	98:0:0:0:5,6:0,1:92,94:1,1
2	132839862	.	A	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||AC098826.4|unprocessed_pseudogene|NON_CODING|ENST00000433943||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:0:0:0:33,33:0,0:0,0:0,0	100:0:0:0:94,95:1,1:5,7:0,0
2	132891666	.	T	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||AC098826.5|unprocessed_pseudogene|NON_CODING|ENST00000452011|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	43:0:0:0:0,0:0,0:0,0:43,44	81:0:0:0:0,0:1,1:5,8:75,75
2	132905399	rs200510812	G	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||258|ANKRD30BL|protein_coding|CODING|ENST00000409867||1),DOWNSTREAM(MODIFIER|||||ANKRD30BL|nonsense_mediated_decay|CODING|ENST00000295181||1),DOWNSTREAM(MODIFIER|||||ANKRD30BL|retained_intron|CODING|ENST00000481691||1),DOWNSTREAM(MODIFIER|||||U6|snRNA|NON_CODING|ENST00000459214||1),EXON(MODIFIER|||||ANKRD30BL|processed_transcript|CODING|ENST00000465868|3|1),EXON(MODIFIER|||||ANKRD30BL|processed_transcript|CODING|ENST00000470729|5|1);RSPOS=132905399;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000000205000002000100;WGT=1;VC=SNV;REF;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:1:0:0:0,0:0,0:28,31:0,0	83:0:0:0:0,0:0,0:74,75:9,11
2	132955878	.	T	C	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||ANKRD30BL|processed_transcript|CODING|ENST00000470729|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:0:0:0:0,0:0,0:0,0:35,40	57:1:0:0:0,0:7,8:1,1:48,62
2	132967541	.	T	A	.	PASS	NT=ref;QSS=32;QSS_NT=32;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||ANKRD30BL|processed_transcript|CODING|ENST00000470729|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	88:22:0:0:0,3:0,1:0,0:66,159	169:35:0:0:11,27:0,2:2,3:121,293
2	132968973	rs79147331	G	A	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||ANKRD30BL|processed_transcript|CODING|ENST00000470729|1|1);RSPOS=132968973;dbSNPBuildID=131;SSR=0;SAO=0;VP=050000080009000102000100;GENEINFO=ANKRD30BL:554226;WGT=1;VC=SNV;INT;CFL;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:1:0:0:0,0:0,0:39,40:0,0	91:2:0:0:12,15:0,0:77,79:0,0
2	132968980	rs74865484	G	C	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||ANKRD30BL|processed_transcript|CODING|ENST00000470729|1|1);RSPOS=132968980;dbSNPBuildID=131;SSR=0;SAO=0;VP=050000080009000102000100;GENEINFO=ANKRD30BL:554226;WGT=1;VC=SNV;INT;CFL;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:1:0:0:0,0:0,0:39,40:0,0	96:3:0:0:0,0:10,15:82,83:1,1
2	132970521	rs201257263	A	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AC;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER|||||ANKRD30BL|processed_transcript|CODING|ENST00000470729|1|1);RSPOS=132970521;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000080005000002000100;WGT=1;VC=SNV;INT;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	46:2:0:0:44,46:0,2:0,0:0,0	88:1:0:0:81,82:6,14:0,0:0,0
2	132972507	rs200389603	T	C	.	PASS	NT=ref;QSS=28;QSS_NT=28;SGT=TT->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER|||||ANKRD30BL|processed_transcript|CODING|ENST00000470729|1|1);RSPOS=132972507;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000080005000002000100;WGT=1;VC=SNV;INT;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	47:7:0:0:0,0:0,1:0,0:40,54	115:2:0:0:0,0:20,21:0,0:93,116
2	132977465	.	A	G	.	PASS	NT=ref;QSS=25;QSS_NT=25;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||ANKRD30BL|processed_transcript|CODING|ENST00000470729|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	58:6:0:0:52,76:0,0:0,1:0,2	166:17:0:0:142,217:1,1:6,17:0,0
2	132986789	rs113594485	T	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||ANKRD30BL|processed_transcript|CODING|ENST00000470729|1|1);RSPOS=132986789;dbSNPBuildID=132;SSR=0;SAO=0;VP=050100080005000102000100;GENEINFO=ANKRD30BL:554226;WGT=1;VC=SNV;SLO;INT;ASP;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:0:0:0:0,0:0,0:1,1:36,48	99:1:0:0:0,0:11,11:0,0:87,103
2	133019896	.	G	T	.	PASS	NT=ref;QSS=25;QSS_NT=25;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||ANKRD30BL|processed_transcript|CODING|ENST00000470729||1),UPSTREAM(MODIFIER|||||CDC27P1|processed_pseudogene|NON_CODING|ENST00000445384||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	72:7:0:0:0,0:0,0:65,74:0,0	210:27:0:0:0,0:0,1:177,208:6,9
2	133112676	rs28827843	G	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->GT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=DOWNSTREAM(MODIFIER|||||FAM201B|processed_pseudogene|NON_CODING|ENST00000458407||1),DOWNSTREAM(MODIFIER|||||FAM201B|processed_pseudogene|NON_CODING|ENST00000545408||1),INTERGENIC(MODIFIER||||||||||1);RSPOS=133112676;dbSNPBuildID=125;SSR=0;SAO=0;VP=050000000009000002000100;WGT=1;VC=SNV;CFL;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	68:1:0:0:0,0:0,0:67,69:0,2	168:5:0:0:0,0:0,0:157,160:6,12
2	134106552	.	A	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1909|NCKAP5|protein_coding|CODING|ENST00000317721|1|1),INTRON(MODIFIER||||1909|NCKAP5|protein_coding|CODING|ENST00000409261|3|1),INTRON(MODIFIER||||590|NCKAP5|protein_coding|CODING|ENST00000405974|1|1),INTRON(MODIFIER||||590|NCKAP5|protein_coding|CODING|ENST00000409213|3|1),INTRON(MODIFIER||||68|NCKAP5|protein_coding|CODING|ENST00000358991|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:0:0:0:33,33:0,0:0,0:0,0	57:1:0:0:52,53:0,0:0,0:4,4
2	134590831	.	A	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	28:1:0:0:27,28:0,0:0,0:0,0	73:0:0:0:66,66:0,0:1,1:6,6
2	134776601	.	T	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:0:0:0:0,0:0,0:0,0:29,29	57:0:0:0:5,5:0,0:0,0:52,52
2	134908301	.	G	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||741|MGAT5|protein_coding|CODING|ENST00000409645|1|1),INTRON(MODIFIER|||||MGAT5|processed_transcript|CODING|ENST00000468758|1|1),INTRON(MODIFIER|||||MGAT5|processed_transcript|CODING|ENST00000481801|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:0:0:0:1,1:0,0:34,34:0,0	89:0:0:0:0,0:4,4:85,85:0,0
2	134909389	.	T	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||741|MGAT5|protein_coding|CODING|ENST00000409645|1|1),INTRON(MODIFIER|||||MGAT5|processed_transcript|CODING|ENST00000468758|1|1),INTRON(MODIFIER|||||MGAT5|processed_transcript|CODING|ENST00000481801|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:6:0:0:0,1:0,1:0,0:32,37	38:6:0:0:0,2:5,6:0,0:27,33
2	135367432	.	T	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||289|TMEM163|protein_coding|CODING|ENST00000281924|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	28:0:0:0:0,1:0,0:0,0:28,28	68:4:0:0:0,0:8,8:1,3:55,63
2	135388038	.	C	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||289|TMEM163|protein_coding|CODING|ENST00000281924|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:0:0:0:0,0:37,37:0,0:0,0	88:4:0:0:0,0:79,83:0,0:5,5
2	136632934	.	C	A	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||821|MCM6|protein_coding|CODING|ENST00000264156|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:0:0:0:1,1:38,38:0,0:0,0	70:3:0:0:12,13:55,56:0,0:0,0
2	137615241	.	A	C	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1606|THSD7B|protein_coding|CODING|ENST00000409968|1|1),INTRON(MODIFIER|||||THSD7B|processed_transcript|CODING|ENST00000472720|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:0:0:0:34,34:0,0:0,0:0,0	71:0:0:0:64,64:7,7:0,0:0,0
2	139512856	.	A	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||264|NXPH2|protein_coding|CODING|ENST00000272641|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:0:0:0:31,31:0,0:0,0:1,1	93:1:0:0:85,86:7,7:0,0:0,0
2	141039404	.	C	T	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||4599|LRP1B|protein_coding|CODING|ENST00000389484|84|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:0:0:0:0,0:35,36:0,0:0,0	71:0:0:0:0,0:61,61:0,0:10,10
2	141603850	.	A	C	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||780|LRP1B|protein_coding|CODING|ENST00000434794||1),INTRON(MODIFIER||||4599|LRP1B|protein_coding|CODING|ENST00000389484|29|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:0:0:0:37,37:0,0:0,0:0,0	79:1:0:0:71,72:7,7:0,0:0,0
2	141642809	.	C	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||4599|LRP1B|protein_coding|CODING|ENST00000389484|24|1),INTRON(MODIFIER||||780|LRP1B|protein_coding|CODING|ENST00000434794|9|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:0:0:0:0,0:31,31:0,0:0,0	86:0:0:0:10,10:76,76:0,0:0,0
2	141762591	.	C	G	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||4599|LRP1B|protein_coding|CODING|ENST00000389484|15|1),INTRON(MODIFIER||||780|LRP1B|protein_coding|CODING|ENST00000434794|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:1:0:0:0,0:33,34:0,0:0,0	71:0:0:0:0,0:65,65:6,6:0,0
2	141774675	.	A	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||4599|LRP1B|protein_coding|CODING|ENST00000389484|12|1),INTRON(MODIFIER||||780|LRP1B|protein_coding|CODING|ENST00000434794|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:0:0:0:29,30:0,0:0,0:0,0	66:0:0:0:59,59:0,0:7,7:0,0
2	142387922	.	G	T	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||4599|LRP1B|protein_coding|CODING|ENST00000389484|2|1),INTRON(MODIFIER||||780|LRP1B|protein_coding|CODING|ENST00000434794|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:0:0:0:0,0:0,0:36,36:0,0	70:1:0:0:0,0:0,0:63,64:6,6
2	144255520	.	G	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||475|ARHGAP15|protein_coding|CODING|ENST00000295095|9|1),INTRON(MODIFIER|||||ARHGAP15|processed_transcript|CODING|ENST00000548242|4|1),INTRON(MODIFIER|||||ARHGAP15|retained_intron|CODING|ENST00000552289|1|1),INTRON(MODIFIER|||||RP11-570L15.2|antisense|NON_CODING|ENST00000546678|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:0:0:0:0,0:0,0:32,32:0,0	90:1:0:0:0,0:6,6:83,84:0,0
2	147443272	.	A	G	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:0:0:0:37,37:0,0:0,0:0,0	73:2:0:0:66,68:0,0:5,5:0,0
2	148086723	.	T	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:2:0:0:0,1:0,0:0,0:29,30	82:1:0:0:0,0:10,10:0,0:71,73
2	149531950	.	T	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||807|EPC2|protein_coding|CODING|ENST00000258484|10|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	28:0:0:0:0,0:0,0:0,0:28,29	79:3:0:0:0,0:6,6:1,1:69,74
2	149841142	.	C	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||725|KIF5C|protein_coding|CODING|ENST00000397413|8|1),INTRON(MODIFIER||||862|KIF5C|protein_coding|CODING|ENST00000414838|13|1),INTRON(MODIFIER||||957|KIF5C|protein_coding|CODING|ENST00000435030|15|1),INTRON(MODIFIER|||||KIF5C|processed_transcript|CODING|ENST00000464066|8|1),INTRON(MODIFIER|||||KIF5C|retained_intron|CODING|ENST00000460377|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:1:0:0:0,0:28,29:0,0:0,0	70:1:0:0:0,0:65,66:4,4:0,0
2	151490776	.	T	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||AC104777.4|lincRNA|NON_CODING|ENST00000413247|3|1),INTRON(MODIFIER|||||AC104777.4|lincRNA|NON_CODING|ENST00000423428|2|1),INTRON(MODIFIER|||||AC104777.4|lincRNA|NON_CODING|ENST00000427615|3|1),INTRON(MODIFIER|||||AC104777.4|lincRNA|NON_CODING|ENST00000440668|2|1),INTRON(MODIFIER|||||AC104777.4|lincRNA|NON_CODING|ENST00000443811|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	27:0:0:0:0,0:0,0:0,0:27,27	92:2:0:0:0,0:6,6:0,0:84,86
2	152033496	.	C	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||AC018731.3|lincRNA|NON_CODING|ENST00000447078|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:1:0:0:0,0:28,29:0,0:0,0	74:0:0:0:0,0:70,71:4,4:0,0
2	153454475	.	A	G	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1092|FMNL2|protein_coding|CODING|ENST00000288670|9|1),INTRON(MODIFIER|||||FMNL2|retained_intron|CODING|ENST00000492942|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:1:0:0:31,32:1,1:0,0:0,0	62:0:0:0:57,59:0,0:5,5:0,0
2	154585530	.	G	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:0:0:0:0,0:0,0:32,32:0,0	74:0:0:0:0,0:0,0:67,67:7,7
2	158046684	.	T	A	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:1:0:0:0,0:0,0:0,0:35,36	62:0:0:0:6,6:0,0:1,1:55,55
2	158395037	.	C	G	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||336|ACVR1C|protein_coding|CODING|ENST00000348328|6|1),INTRON(MODIFIER||||413|ACVR1C|protein_coding|CODING|ENST00000335450|7|1),INTRON(MODIFIER||||443|ACVR1C|protein_coding|CODING|ENST00000409680|8|1),INTRON(MODIFIER||||493|ACVR1C|protein_coding|CODING|ENST00000243349|8|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:1:0:0:0,0:35,36:0,0:0,0	67:0:0:0:0,0:63,63:4,4:0,0
2	162424118	.	G	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||AC062022.1|processed_pseudogene|NON_CODING|ENST00000451026||1),INTRON(MODIFIER|||||SLC4A10|processed_transcript|CODING|ENST00000482861|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:0:0:0:0,0:0,0:32,32:0,0	82:0:0:0:0,0:1,1:71,72:10,10
2	164637189	.	T	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||AC092684.1|lincRNA|NON_CODING|ENST00000429636|4|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:0:0:0:0,0:0,0:0,0:32,32	73:1:0:0:0,0:4,4:1,1:67,68
2	166523493	rs141399244	G	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->GT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER||||137|CSRNP3|protein_coding|CODING|ENST00000409664|3|1),INTRON(MODIFIER||||436|CSRNP3|protein_coding|CODING|ENST00000421875|5|1),INTRON(MODIFIER||||585|CSRNP3|protein_coding|CODING|ENST00000314499|5|1),INTRON(MODIFIER||||585|CSRNP3|protein_coding|CODING|ENST00000342316|3|1),INTRON(MODIFIER||||617|CSRNP3|protein_coding|CODING|ENST00000409420|3|1);RSPOS=166523493;dbSNPBuildID=134;SSR=0;SAO=0;VP=050000080005000002000100;GENEINFO=CSRNP3:80034;WGT=1;VC=SNV;INT;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	57:5:1:0:0,0:0,0:51,71:1,3	96:6:2:0:0,2:0,0:80,108:10,13
2	169428319	.	G	A	.	PASS	NT=ref;QSS=23;QSS_NT=23;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||384|CERS6|protein_coding|CODING|ENST00000305747|3|1),INTRON(MODIFIER||||392|CERS6|protein_coding|CODING|ENST00000392687|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	45:1:0:0:0,0:0,0:44,45:0,0	79:1:0:0:7,7:0,0:71,72:0,0
2	173934373	.	C	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:0:0:0:0,0:32,32:0,0:0,0	64:1:0:0:4,5:59,59:0,0:0,0
2	174281881	.	T	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:1:0:0:0,0:0,0:0,0:33,34	71:1:0:0:0,0:6,7:1,1:63,63
2	174722839	.	A	G	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	43:2:0:0:40,42:1,2:0,0:0,0	97:2:0:0:86,87:0,0:9,10:0,0
2	175532685	.	C	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||AC018890.6|processed_transcript|NON_CODING|ENST00000412835||1),INTRON(MODIFIER||||403|WIPF1|protein_coding|CODING|ENST00000409415|1|1),INTRON(MODIFIER||||503|WIPF1|protein_coding|CODING|ENST00000359761|1|1),INTRON(MODIFIER||||510|WIPF1|protein_coding|CODING|ENST00000272746|1|1),INTRON(MODIFIER|||||AC018890.6|processed_transcript|NON_CODING|ENST00000442996|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	28:0:0:0:0,0:28,29:0,0:0,0	77:1:0:0:7,7:69,70:0,0:0,0
2	176303890	.	A	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||AC096649.3|lincRNA|NON_CODING|ENST00000438963|1|1),INTRON(MODIFIER|||||AC096649.3|lincRNA|NON_CODING|ENST00000444567|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:0:0:0:29,30:0,0:0,0:0,0	80:0:0:0:73,73:0,0:0,0:7,7
2	178909162	.	C	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||683|PDE11A|protein_coding|CODING|ENST00000358450|2|1),INTRON(MODIFIER||||933|PDE11A|protein_coding|CODING|ENST00000286063|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:1:0:0:0,0:29,30:0,0:0,0	79:1:0:0:0,0:73,74:0,0:5,5
2	181158431	.	C	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:1:0:0:0,0:32,33:1,1:0,0	76:2:0:0:4,4:70,72:0,0:0,0
2	182389139	.	A	C	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||ITGA4|retained_intron|CODING|ENST00000468948||1),INTRON(MODIFIER||||1032|ITGA4|protein_coding|CODING|ENST00000397033|20|1),INTRON(MODIFIER|||||ITGA4|retained_intron|CODING|ENST00000476824|6|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:1:0:0:39,40:0,0:0,0:0,0	79:0:0:0:73,73:6,6:0,0:0,0
2	182945653	.	A	C	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||109|PPP1R1C|protein_coding|CODING|ENST00000409137|4|1),INTRON(MODIFIER||||109|PPP1R1C|protein_coding|CODING|ENST00000409702|4|1),INTRON(MODIFIER||||109|PPP1R1C|protein_coding|CODING|ENST00000452904|4|1),INTRON(MODIFIER||||116|PPP1R1C|protein_coding|CODING|ENST00000280295|4|1),INTRON(MODIFIER|||||PPP1R1C|processed_transcript|CODING|ENST00000464264|5|1),INTRON(MODIFIER|||||PPP1R1C|processed_transcript|CODING|ENST00000465612|5|1),INTRON(MODIFIER|||||PPP1R1C|processed_transcript|CODING|ENST00000475249|4|1),INTRON(MODIFIER|||||PPP1R1C|processed_transcript|CODING|ENST00000479855|3|1),INTRON(MODIFIER|||||PPP1R1C|processed_transcript|CODING|ENST00000486067|6|1),INTRON(MODIFIER|||||PPP1R1C|processed_transcript|CODING|ENST00000490645|5|1),INTRON(MODIFIER|||||PPP1R1C|processed_transcript|CODING|ENST00000495820|4|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:0:0:0:34,34:0,0:0,0:0,0	85:0:0:0:80,80:5,5:0,0:0,0
2	183567496	.	C	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:1:0:0:0,0:30,31:0,0:0,0	74:0:0:0:7,7:67,67:0,0:0,0
2	184108508	.	C	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:0:0:0:0,0:33,33:0,0:0,0	85:0:0:0:0,0:78,78:0,0:7,7
2	184121097	.	C	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||LIN28AP1|processed_pseudogene|NON_CODING|ENST00000429574||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:2:0:0:0,0:29,31:0,0:0,0	83:1:0:0:0,0:75,76:0,0:7,7
2	187585444	rs199887470	G	A	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||826|FAM171B|protein_coding|CODING|ENST00000304698|1|1);RSPOS=187585444;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000080005000002000100;WGT=1;VC=SNV;INT;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	25:0:1:0:0,0:0,0:25,25:0,0	83:5:6:0:13,16:0,0:65,68:0,0
2	188732935	.	C	A	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||AC068718.1|lincRNA|NON_CODING|ENST00000434418|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:3:0:0:0,0:36,39:0,0:0,0	80:3:0:0:5,5:72,76:0,0:0,0
2	189472812	.	G	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||AC079613.1|processed_transcript|NON_CODING|ENST00000431708|4|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:0:0:0:0,0:0,0:33,33:0,0	87:0:0:0:6,6:0,0:81,81:0,0
2	192334340	.	C	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:0:0:0:1,1:30,31:0,0:0,0	81:2:0:0:0,0:71,73:0,1:8,8
2	193027969	.	T	C	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||346|TMEFF2|protein_coding|CODING|ENST00000392314|4|1),INTRON(MODIFIER||||374|TMEFF2|protein_coding|CODING|ENST00000272771|4|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:0:0:0:0,0:0,0:0,0:33,33	83:0:0:0:0,0:10,10:1,1:72,72
2	193888875	.	T	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	28:1:0:0:0,0:0,0:0,0:27,28	81:0:0:0:7,7:0,0:0,0:74,74
2	194172079	rs7609244	T	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=194172079;GMAF=0.0778;dbSNPBuildID=116;SSR=0;SAO=0;VP=050000000001000016000100;WGT=1;VC=SNV;KGPhase1;KGPROD;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	26:1:0:0:0,0:0,0:0,0:25,26	65:1:0:0:8,8:0,0:1,1:55,56
2	196766809	.	G	A	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=EXON(MODIFIER|||||DNAH7|retained_intron|CODING|ENST00000475293|1|1),INTRON(MODIFIER||||4024|DNAH7|protein_coding|CODING|ENST00000312428|27|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:0:0:0:0,0:0,0:36,36:0,0	68:1:0:0:8,8:0,0:59,60:0,0
2	200253011	.	G	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||615|SATB2|protein_coding|CODING|ENST00000428695|2|1),INTRON(MODIFIER||||674|SATB2|protein_coding|CODING|ENST00000443023|2|1),INTRON(MODIFIER||||733|SATB2|protein_coding|CODING|ENST00000260926|4|1),INTRON(MODIFIER||||733|SATB2|protein_coding|CODING|ENST00000417098|3|1),INTRON(MODIFIER||||733|SATB2|protein_coding|CODING|ENST00000457245|4|1),INTRON(MODIFIER|||||SATB2|processed_transcript|CODING|ENST00000484124|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:1:0:0:0,0:0,0:33,34:0,0	85:1:0:0:4,4:0,0:80,80:0,1
2	200618106	.	G	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:0:0:0:0,0:0,0:32,32:0,0	70:0:0:0:0,0:1,1:64,64:5,5
2	200686219	.	A	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=AA->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER||||114|AC073043.2|protein_coding|CODING|ENST00000420922|4|1),INTRON(MODIFIER||||138|AC073043.2|protein_coding|CODING|ENST00000420128|3|1),INTRON(MODIFIER||||77|AC073043.2|protein_coding|CODING|ENST00000416668|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:2:0:0:34,36:0,0:0,0:0,0	46:2:0:0:38,42:0,0:6,6:0,0
2	203268728	.	C	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1038|BMPR2|protein_coding|CODING|ENST00000374580|1|1),INTRON(MODIFIER||||530|BMPR2|protein_coding|CODING|ENST00000374574|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	19:1:0:0:0,0:18,19:0,0:0,0	59:3:0:0:11,13:45,46:0,0:0,0
2	203818218	rs201163977	G	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||130|ALS2CR8|protein_coding|CODING|ENST00000414857||1),DOWNSTREAM(MODIFIER||||91|ALS2CR8|protein_coding|CODING|ENST00000431787||1),INTRON(MODIFIER||||207|ALS2CR8|protein_coding|CODING|ENST00000434998|4|1),INTRON(MODIFIER||||207|ALS2CR8|protein_coding|CODING|ENST00000456821|4|1),INTRON(MODIFIER||||309|ALS2CR8|protein_coding|CODING|ENST00000444724|5|1),INTRON(MODIFIER||||623|ALS2CR8|protein_coding|CODING|ENST00000414439|3|1),INTRON(MODIFIER||||637|ALS2CR8|protein_coding|CODING|ENST00000545253|3|1),INTRON(MODIFIER||||649|ALS2CR8|protein_coding|CODING|ENST00000428585|4|1),INTRON(MODIFIER||||649|ALS2CR8|protein_coding|CODING|ENST00000545262|5|1),INTRON(MODIFIER||||725|ALS2CR8|protein_coding|CODING|ENST00000320443|5|1),INTRON(MODIFIER||||725|ALS2CR8|protein_coding|CODING|ENST00000402905|5|1),INTRON(MODIFIER||||725|ALS2CR8|protein_coding|CODING|ENST00000438828|5|1),INTRON(MODIFIER||||79|ALS2CR8|protein_coding|CODING|ENST00000447539|5|1),INTRON(MODIFIER|||||ALS2CR8|nonsense_mediated_decay|CODING|ENST00000422368|4|1),INTRON(MODIFIER|||||ALS2CR8|nonsense_mediated_decay|CODING|ENST00000427712|7|1),INTRON(MODIFIER|||||ALS2CR8|nonsense_mediated_decay|CODING|ENST00000457031|4|1),INTRON(MODIFIER|||||ALS2CR8|processed_transcript|CODING|ENST00000471271|5|1),INTRON(MODIFIER|||||WDR12|processed_transcript|CODING|ENST00000477723|1|1);RSPOS=203818218;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000080005000002000100;WGT=1;VC=SNV;INT;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	26:3:0:0:0,0:0,0:23,25:0,1	62:5:1:0:0,0:1,1:46,47:10,14
2	204650095	.	G	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||U6|snRNA|NON_CODING|ENST00000384243||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:0:0:0:0,0:0,0:31,31:0,0	75:0:0:0:6,6:0,0:69,69:0,0
2	205069555	.	C	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:0:0:0:0,0:32,32:0,0:0,0	72:0:0:0:0,0:65,65:0,0:7,7
2	206072238	rs200093141	G	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1104|PARD3B|protein_coding|CODING|ENST00000349953|15|1),INTRON(MODIFIER||||1136|PARD3B|protein_coding|CODING|ENST00000351153|15|1),INTRON(MODIFIER||||1143|PARD3B|protein_coding|CODING|ENST00000358768|14|1),INTRON(MODIFIER||||1205|PARD3B|protein_coding|CODING|ENST00000406610|15|1),INTRON(MODIFIER|||||PARD3B|processed_transcript|CODING|ENST00000462231|15|1);RSPOS=206072238;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000080005000002000100;WGT=1;VC=SNV;INT;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	18:0:0:0:0,0:0,0:18,18:0,0	35:0:0:0:6,7:0,0:29,30:0,0
2	210310670	.	C	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||559|MAP2|protein_coding|CODING|ENST00000199940|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:0:0:0:0,0:31,31:0,0:0,0	82:3:0:0:7,8:72,73:0,0:0,1
2	210370960	.	A	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||559|MAP2|protein_coding|CODING|ENST00000199940|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:0:0:0:39,39:0,0:0,0:0,0	72:1:0:0:67,68:0,0:4,4:0,0
2	211959285	.	A	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:0:0:0:35,35:0,0:0,0:0,0	87:1:0:0:81,81:0,0:0,1:5,5
2	212213614	.	T	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:2:0:0:0,0:0,0:0,0:32,34	63:0:0:0:6,6:0,0:0,0:57,58
2	212764705	.	C	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||127|ERBB4|protein_coding|CODING|ENST00000435846|3|1),INTRON(MODIFIER||||1292|ERBB4|protein_coding|CODING|ENST00000436443|3|1),INTRON(MODIFIER||||1298|ERBB4|protein_coding|CODING|ENST00000402597|3|1),INTRON(MODIFIER||||1308|ERBB4|protein_coding|CODING|ENST00000342788|3|1),INTRON(MODIFIER|||||ERBB4|processed_transcript|CODING|ENST00000484474|2|1),INTRON(MODIFIER|||||ERBB4|retained_intron|CODING|ENST00000484594|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	28:0:0:0:0,0:28,28:0,0:0,0	57:1:0:0:4,4:52,53:0,0:0,0
2	213663639	.	G	A	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=GG->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=DOWNSTREAM(MODIFIER|||||AC093381.2|lincRNA|NON_CODING|ENST00000434559||1),INTRON(MODIFIER|||||AC093381.2|lincRNA|NON_CODING|ENST00000453965|1|1),INTRON(MODIFIER|||||AC093865.1|processed_transcript|NON_CODING|ENST00000415387|4|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	21:1:0:0:0,0:0,0:20,27:0,0	26:0:0:0:7,7:0,0:19,31:0,0
2	213663641	.	A	G	.	PASS	NT=ref;QSS=23;QSS_NT=23;SGT=AA->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=DOWNSTREAM(MODIFIER|||||AC093381.2|lincRNA|NON_CODING|ENST00000434559||1),INTRON(MODIFIER|||||AC093381.2|lincRNA|NON_CODING|ENST00000453965|1|1),INTRON(MODIFIER|||||AC093865.1|processed_transcript|NON_CODING|ENST00000415387|4|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	21:1:0:0:20,27:0,0:0,0:0,0	26:0:0:0:18,30:0,0:8,8:0,0
2	214189570	.	C	T	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||251|SPAG16|protein_coding|CODING|ENST00000413312|4|1),INTRON(MODIFIER||||347|SPAG16|protein_coding|CODING|ENST00000272898|5|1),INTRON(MODIFIER||||374|SPAG16|protein_coding|CODING|ENST00000447990|5|1),INTRON(MODIFIER||||537|SPAG16|protein_coding|CODING|ENST00000374309|3|1),INTRON(MODIFIER||||631|SPAG16|protein_coding|CODING|ENST00000331683|5|1),INTRON(MODIFIER|||||SPAG16|nonsense_mediated_decay|CODING|ENST00000406979|7|1),INTRON(MODIFIER|||||SPAG16|nonsense_mediated_decay|CODING|ENST00000420497|7|1),INTRON(MODIFIER|||||SPAG16|nonsense_mediated_decay|CODING|ENST00000440779|4|1),INTRON(MODIFIER|||||SPAG16|nonsense_mediated_decay|CODING|ENST00000452556|3|1),INTRON(MODIFIER|||||SPAG16|processed_transcript|CODING|ENST00000414961|4|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:2:0:0:0,0:37,39:0,0:0,0	76:0:0:0:0,0:72,72:0,0:4,4
2	214382560	.	A	T	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||255|SPAG16|protein_coding|CODING|ENST00000451561|1|1),INTRON(MODIFIER||||537|SPAG16|protein_coding|CODING|ENST00000374309|8|1),INTRON(MODIFIER||||631|SPAG16|protein_coding|CODING|ENST00000331683|10|1),INTRON(MODIFIER|||||SPAG16|nonsense_mediated_decay|CODING|ENST00000406979|12|1),INTRON(MODIFIER|||||SPAG16|nonsense_mediated_decay|CODING|ENST00000452556|8|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	42:1:0:0:41,42:0,0:0,0:0,0	71:0:0:0:62,62:0,0:0,0:9,9
2	215508590	.	G	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||AC107218.3|processed_transcript|NON_CODING|ENST00000412896|2|1),INTRON(MODIFIER|||||AC107218.3|processed_transcript|NON_CODING|ENST00000437883|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:1:0:0:0,0:0,0:32,33:0,0	82:0:0:0:0,0:0,0:74,74:8,8
2	215599996	.	A	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||215|BARD1|protein_coding|CODING|ENST00000421162|5|1),INTRON(MODIFIER||||567|BARD1|protein_coding|CODING|ENST00000449967|8|1),INTRON(MODIFIER||||777|BARD1|protein_coding|CODING|ENST00000260947|9|1),INTRON(MODIFIER|||||BARD1|nonsense_mediated_decay|CODING|ENST00000455743|8|1),UPSTREAM(MODIFIER||||148|BARD1|protein_coding|CODING|ENST00000432456||1),UPSTREAM(MODIFIER|||||BARD1|processed_transcript|CODING|ENST00000471590||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:0:0:0:29,29:0,0:0,0:0,0	100:0:0:0:94,94:0,0:6,6:0,0
2	215691267	.	T	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:1:0:0:0,0:0,0:0,0:32,33	77:0:0:0:5,5:0,0:0,0:72,72
2	217959362	.	G	A	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:0:0:0:0,0:0,0:38,38:0,0	77:0:0:0:4,4:0,0:73,74:0,0
2	218085411	.	C	G	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:0:0:0:0,0:34,34:0,0:0,0	75:2:0:0:0,0:68,70:5,5:0,0
2	220367436	.	G	A	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=GG->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=DOWNSTREAM(MODIFIER|||||GMPPA|retained_intron|CODING|ENST00000480506||1),DOWNSTREAM(MODIFIER|||||SPEG|processed_transcript|CODING|ENST00000475104||1),INTRON(MODIFIER||||162|GMPPA|protein_coding|CODING|ENST00000455657|6|1),INTRON(MODIFIER||||248|GMPPA|protein_coding|CODING|ENST00000435316|5|1),INTRON(MODIFIER||||420|GMPPA|protein_coding|CODING|ENST00000313597|6|1),INTRON(MODIFIER||||420|GMPPA|protein_coding|CODING|ENST00000341142|6|1),INTRON(MODIFIER||||420|GMPPA|protein_coding|CODING|ENST00000358215|6|1),INTRON(MODIFIER||||420|GMPPA|protein_coding|CODING|ENST00000373908|6|1),INTRON(MODIFIER||||473|GMPPA|protein_coding|CODING|ENST00000373917|6|1),INTRON(MODIFIER|||||AC053503.11|antisense|NON_CODING|ENST00000429882|1|1),INTRON(MODIFIER|||||GMPPA|nonsense_mediated_decay|CODING|ENST00000443704|6|1),INTRON(MODIFIER|||||GMPPA|retained_intron|CODING|ENST00000481170|3|1),INTRON(MODIFIER|||||GMPPA|retained_intron|CODING|ENST00000493655|5|1),UPSTREAM(MODIFIER|||||GMPPA|retained_intron|CODING|ENST00000480034||1),UPSTREAM(MODIFIER|||||GMPPA|retained_intron|CODING|ENST00000496536||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	42:0:0:0:0,0:0,0:42,42:0,0	72:2:0:0:5,5:0,0:65,68:0,0
2	221570810	.	G	A	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||AC067956.1|lincRNA|NON_CODING|ENST00000414512||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:0:0:0:0,0:0,0:36,36:0,0	94:2:0:0:5,5:0,0:87,89:0,0
2	221613953	.	G	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:1:0:0:0,0:0,0:28,29:0,0	60:0:0:0:5,5:1,1:54,54:0,0
2	222230888	.	G	A	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	43:3:0:0:0,0:0,0:40,58:0,0	85:7:0:0:5,7:0,1:73,93:0,0
2	227375756	rs191061860	G	A	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=227375756;GMAF=0.0005;dbSNPBuildID=135;SSR=0;SAO=0;VP=050000000005000014000100;WGT=1;VC=SNV;ASP;KGPhase1;KGPROD	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:0:0:0:0,0:0,0:33,33:1,1	69:0:0:0:7,7:0,0:62,62:0,0
2	228843373	.	G	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||1671|SPHKAP|protein_coding|CODING|ENST00000344657||1),DOWNSTREAM(MODIFIER||||1700|SPHKAP|protein_coding|CODING|ENST00000392056||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:1:0:0:1,1:0,0:31,32:0,0	77:2:0:0:0,0:7,9:68,69:0,0
2	230863866	.	A	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||157|FBXO36|protein_coding|CODING|ENST00000373652|4|1),INTRON(MODIFIER||||168|FBXO36|protein_coding|CODING|ENST00000409992|3|1),INTRON(MODIFIER||||188|FBXO36|protein_coding|CODING|ENST00000283946|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	24:3:0:0:21,24:0,0:0,0:0,0	57:5:0:0:41,45:9,11:1,1:1,1
2	231004528	.	T	C	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||AC093171.1|antisense|NON_CODING|ENST00000445199|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:0:0:0:0,0:0,0:0,0:38,38	72:0:0:0:0,0:6,6:1,1:65,65
2	231494785	.	T	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:0:0:0:0,0:0,0:0,0:33,33	92:0:0:0:1,1:7,7:1,1:83,83
2	232137492	.	C	G	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||157|ARMC9|protein_coding|CODING|ENST00000446447|2|1),INTRON(MODIFIER||||207|ARMC9|protein_coding|CODING|ENST00000436339|5|1),INTRON(MODIFIER||||665|ARMC9|protein_coding|CODING|ENST00000349938|13|1),INTRON(MODIFIER|||||ARMC9|processed_transcript|CODING|ENST00000483477|12|1),INTRON(MODIFIER|||||ARMC9|retained_intron|CODING|ENST00000467698|2|1),INTRON(MODIFIER|||||ARMC9|retained_intron|CODING|ENST00000481520|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:0:0:0:0,0:38,38:0,0:0,0	90:0:0:0:0,0:85,85:5,5:0,0
2	232357401	.	A	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||AC017104.1|miRNA|NON_CODING|ENST00000584251||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:0:0:0:32,32:0,0:0,0:0,0	75:0:0:0:70,71:5,5:0,0:0,0
2	232480951	.	T	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	28:0:0:0:0,0:0,0:0,0:28,28	63:3:0:0:4,4:1,1:0,1:55,57
2	233263573	.	T	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:1:0:0:0,0:0,0:0,1:29,29	66:0:0:0:0,0:5,5:0,0:61,61
2	235026144	rs77573649	G	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=235026144;dbSNPBuildID=131;SSR=0;SAO=0;VP=050000000005040102000100;WGT=1;VC=SNV;ASP;VLD;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	28:0:0:0:1,1:0,0:27,27:0,0	73:1:0:0:1,1:0,0:62,63:9,9
2	236433940	.	T	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||116|AGAP1|protein_coding|CODING|ENST00000402604|1|1),INTRON(MODIFIER||||405|AGAP1|protein_coding|CODING|ENST00000409457|1|1),INTRON(MODIFIER||||804|AGAP1|protein_coding|CODING|ENST00000336665|1|1),INTRON(MODIFIER||||857|AGAP1|protein_coding|CODING|ENST00000304032|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:0:0:0:0,0:0,0:0,0:29,29	70:1:0:0:0,0:4,6:0,0:65,65
2	237267777	.	G	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||781|IQCA1|protein_coding|CODING|ENST00000431676|14|1),INTRON(MODIFIER||||819|IQCA1|protein_coding|CODING|ENST00000309507|15|1),INTRON(MODIFIER||||822|IQCA1|protein_coding|CODING|ENST00000409907|15|1),INTRON(MODIFIER|||||IQCA1|nonsense_mediated_decay|CODING|ENST00000254653|15|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:1:0:0:0,0:0,0:32,33:0,0	75:0:0:0:0,0:0,0:71,71:4,4
2	237368141	rs76284039	T	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||781|IQCA1|protein_coding|CODING|ENST00000431676|6|1),INTRON(MODIFIER||||819|IQCA1|protein_coding|CODING|ENST00000309507|6|1),INTRON(MODIFIER||||822|IQCA1|protein_coding|CODING|ENST00000409907|6|1),INTRON(MODIFIER|||||IQCA1|nonsense_mediated_decay|CODING|ENST00000254653|6|1),UPSTREAM(MODIFIER|||||IQCA1|processed_transcript|CODING|ENST00000465621||1);RSPOS=237368141;dbSNPBuildID=131;SSR=16;SAO=0;VP=050100080005000102000100;GENEINFO=IQCA1:79781;WGT=1;VC=SNV;SLO;INT;ASP;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	43:1:0:0:0,0:0,0:0,0:42,44	71:4:0:0:0,0:7,8:0,0:60,63
2	237901319	.	G	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:2:0:0:0,0:0,0:33,34:0,1	84:0:0:0:7,7:0,0:77,77:0,0
2	238121894	.	T	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:2:0:0:0,1:0,0:0,0:38,39	84:1:0:0:0,0:6,7:0,0:77,79
2	239359671	rs111575230	C	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||234|ASB1|protein_coding|CODING|ENST00000409297||1),DOWNSTREAM(MODIFIER|||||ASB1|nonsense_mediated_decay|CODING|ENST00000438264||1),DOWNSTREAM(MODIFIER|||||ASB1|processed_transcript|CODING|ENST00000468122||1),INTRON(MODIFIER|||||ASB1|processed_transcript|CODING|ENST00000473306|1|1),INTRON(MODIFIER|||||ASB1|processed_transcript|CODING|ENST00000481566|1|1),UTR_3_PRIME(MODIFIER||||335|ASB1|protein_coding|CODING|ENST00000264607|5|1);RSPOS=239359671;dbSNPBuildID=132;SSR=0;SAO=0;VP=050000800201040102000100;GENEINFO=ASB1:51665|LOC100652884:100652884;WGT=1;VC=SNV;REF;U3;VLD;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	26:0:0:0:0,0:26,26:0,0:0,0	54:2:0:0:0,0:46,49:0,0:6,8
2	239484704	.	C	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	55:16:0:0:0,0:39,56:0,0:0,0	108:25:0:0:0,0:77,105:0,0:6,6
2	239538788	.	G	A	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	42:1:0:0:0,0:0,0:41,42:0,0	59:0:0:0:4,4:0,0:55,55:0,0
2	239778799	.	C	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->AC;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER||||160|TWIST2|protein_coding|CODING|ENST00000448943|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	60:9:0:0:0,1:51,84:0,0:0,0	95:13:1:0:7,11:75,142:0,0:0,0
2	240204704	.	A	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1084|HDAC4|protein_coding|CODING|ENST00000345617|2|1),INTRON(MODIFIER||||122|HDAC4|protein_coding|CODING|ENST00000446876|1|1),INTRON(MODIFIER||||28|HDAC4|protein_coding|CODING|ENST00000544989|2|1),INTRON(MODIFIER|||||HDAC4|retained_intron|CODING|ENST00000463007|1|1),INTRON(MODIFIER|||||HDAC4|retained_intron|CODING|ENST00000493582|2|1),INTRON(MODIFIER|||||HDAC4|retained_intron|CODING|ENST00000535493|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:2:0:0:30,32:0,0:0,0:0,0	85:1:0:0:77,77:7,8:0,0:0,0
2	240511443	rs2411925	T	C	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||196|AC079612.1|protein_coding|CODING|ENST00000358775||1),DOWNSTREAM(MODIFIER|||||AC079612.1|nonsense_mediated_decay|CODING|ENST00000532238||1),INTERGENIC(MODIFIER||||||||||1);RSPOS=240511443;dbSNPBuildID=100;SSR=0;SAO=0;VP=050100000005040102000100;WGT=1;VC=SNV;SLO;ASP;VLD;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:1:0:0:0,0:0,0:0,0:39,42	67:3:0:0:0,0:6,6:0,0:58,62
2	240739817	rs112326993	A	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=240739817;dbSNPBuildID=132;SSR=0;SAO=0;VP=050000000001040102000100;WGT=1;VC=SNV;VLD;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:2:0:0:34,52:2,3:0,0:0,0	73:4:0:0:63,104:0,3:6,13:0,0
2	241334663	.	G	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:2:0:0:0,1:0,0:30,33:0,0	64:2:0:0:0,0:7,7:55,59:0,0
2	241695259	.	G	A	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1470|KIF1A|protein_coding|CODING|ENST00000404283|26|1),INTRON(MODIFIER||||1690|KIF1A|protein_coding|CODING|ENST00000320389|25|1),INTRON(MODIFIER||||1791|KIF1A|protein_coding|CODING|ENST00000498729|27|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:0:0:0:0,0:0,0:36,36:0,0	76:3:0:0:7,8:0,0:66,68:0,0
2	241752240	.	A	G	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1690|KIF1A|protein_coding|CODING|ENST00000320389|1|1),INTRON(MODIFIER||||1791|KIF1A|protein_coding|CODING|ENST00000498729|1|1),INTRON(MODIFIER||||37|KIF1A|protein_coding|CODING|ENST00000448728|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	52:6:0:0:45,61:1,5:0,0:0,0	107:7:0:0:92,107:3,4:5,7:0,1
2	241787523	rs147304229	A	G	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=241787523;GMAF=0.0682;dbSNPBuildID=134;SSR=0;SAO=0;VP=050000000005000016000100;WGT=1;VC=SNV;ASP;KGPhase1;KGPROD;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:3:0:0:35,38:0,0:1,2:0,0	67:5:0:0:50,55:0,0:12,16:0,0
2	242530103	.	T	C	.	PASS	NT=ref;QSS=26;QSS_NT=26;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||THAP4|processed_transcript|CODING|ENST00000497486||1),INTRON(MODIFIER||||165|THAP4|protein_coding|CODING|ENST00000402136|4|1),INTRON(MODIFIER||||192|THAP4|protein_coding|CODING|ENST00000402545|4|1),INTRON(MODIFIER||||577|THAP4|protein_coding|CODING|ENST00000407315|5|1),INTRON(MODIFIER|||||THAP4|retained_intron|CODING|ENST00000321679|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	59:3:0:0:0,0:0,0:1,1:55,78	139:6:0:0:0,0:10,21:1,2:122,178
2	242542905	.	A	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||165|THAP4|protein_coding|CODING|ENST00000402136|2|1),INTRON(MODIFIER||||192|THAP4|protein_coding|CODING|ENST00000402545|2|1),INTRON(MODIFIER||||577|THAP4|protein_coding|CODING|ENST00000407315|3|1),UPSTREAM(MODIFIER|||||THAP4|processed_transcript|CODING|ENST00000497486||1),UPSTREAM(MODIFIER|||||THAP4|retained_intron|CODING|ENST00000321679||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:2:0:0:33,35:1,1:0,0:1,1	58:4:0:0:48,51:0,0:6,8:0,1
2	242927986	.	A	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER|||||AC131097.3|processed_transcript|NON_CODING|ENST00000415434|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	55:2:0:0:50,52:2,4:1,2:0,0	85:2:0:0:70,78:2,3:10,13:1,1
2	242967248	.	T	C	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||AC093642.4|lincRNA|NON_CODING|ENST00000412193||1),INTRON(MODIFIER|||||AC131097.3|processed_transcript|NON_CODING|ENST00000415434|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:0:0:0:0,0:0,0:0,0:38,38	57:2:0:0:0,0:5,5:0,0:50,52
2	242967249	.	G	A	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||AC093642.4|lincRNA|NON_CODING|ENST00000412193||1),INTRON(MODIFIER|||||AC131097.3|processed_transcript|NON_CODING|ENST00000415434|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:0:0:0:0,0:0,0:37,37:0,0	57:2:0:0:5,5:0,0:50,52:0,0
2	242987346	rs185592596	T	C	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=TT->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=DOWNSTREAM(MODIFIER|||||AC093642.6|lincRNA|NON_CODING|ENST00000446593||1),INTRON(MODIFIER|||||AC131097.3|processed_transcript|NON_CODING|ENST00000415434|3|1);RSPOS=242987346;GMAF=0.1511;dbSNPBuildID=135;SSR=0;SAO=0;VP=050000000005000014000100;WGT=1;VC=SNV;ASP;KGPhase1;KGPROD	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	26:2:0:0:0,0:1,2:0,0:23,26	52:9:0:0:0,0:16,26:1,3:26,35
3	621878	rs142539000	G	T	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||AC090044.1|processed_transcript|NON_CODING|ENST00000420823|1|1),INTRON(MODIFIER|||||AC090044.1|processed_transcript|NON_CODING|ENST00000442809|1|1);RSPOS=621878;dbSNPBuildID=134;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:0:0:0:0,0:0,0:38,39:0,0	73:0:0:0:0,0:0,0:67,70:6,7
3	1080948	.	C	G	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:1:0:0:0,0:34,37:0,0:0,0	71:0:0:0:0,0:66,70:5,5:0,0
3	1252561	.	G	A	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1028|CNTN6|protein_coding|CODING|ENST00000350110|2|1),INTRON(MODIFIER||||1028|CNTN6|protein_coding|CODING|ENST00000446702|2|1),INTRON(MODIFIER||||956|CNTN6|protein_coding|CODING|ENST00000539053|1|1),INTRON(MODIFIER|||||CNTN6|nonsense_mediated_decay|CODING|ENST00000394261|3|1),INTRON(MODIFIER|||||CNTN6|nonsense_mediated_decay|CODING|ENST00000397479|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:0:0:0:0,0:0,0:36,36:0,0	75:2:0:0:6,6:0,0:67,70:0,0
3	1567645	rs113803170	A	G	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=1567645;dbSNPBuildID=132;SSR=0;SAO=0;VP=050000000001000102000100;WGT=1;VC=SNV;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:0:0:0:32,33:0,0:0,0:0,0	74:0:0:0:68,71:0,0:6,7:0,0
3	1567654	.	T	C	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:0:0:0:0,0:0,0:1,1:31,32	71:1:0:0:0,0:9,11:0,0:61,64
3	1874484	.	G	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	27:0:0:0:0,0:0,0:27,27:0,0	96:1:0:0:0,0:0,0:85,87:10,10
3	2904180	.	C	A	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=CC->AC;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER||||1026|CNTN4|protein_coding|CODING|ENST00000397461|6|1),INTRON(MODIFIER||||1026|CNTN4|protein_coding|CODING|ENST00000418658|7|1),INTRON(MODIFIER||||1026|CNTN4|protein_coding|CODING|ENST00000427331|4|1),INTRON(MODIFIER|||||CNTN4|nonsense_mediated_decay|CODING|ENST00000427741|7|1),INTRON(MODIFIER|||||CNTN4|retained_intron|CODING|ENST00000430505|5|1),INTRON(MODIFIER|||||CNTN4|retained_intron|CODING|ENST00000438282|5|1),UPSTREAM(MODIFIER||||807|CNTN4|protein_coding|CODING|ENST00000358480||1),UPSTREAM(MODIFIER|||||CNTN4|processed_transcript|CODING|ENST00000473058||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:0:0:0:0,0:35,35:0,0:0,0	73:2:0:0:11,11:60,62:0,0:0,0
3	3134204	.	T	G	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||211|IL5RA|protein_coding|CODING|ENST00000445864|3|1),INTRON(MODIFIER||||325|IL5RA|protein_coding|CODING|ENST00000418488|5|1),INTRON(MODIFIER||||333|IL5RA|protein_coding|CODING|ENST00000430514|9|1),INTRON(MODIFIER||||333|IL5RA|protein_coding|CODING|ENST00000456302|8|1),INTRON(MODIFIER||||335|IL5RA|protein_coding|CODING|ENST00000311981|9|1),INTRON(MODIFIER||||335|IL5RA|protein_coding|CODING|ENST00000383846|8|1),INTRON(MODIFIER||||378|IL5RA|protein_coding|CODING|ENST00000438560|8|1),INTRON(MODIFIER||||420|IL5RA|protein_coding|CODING|ENST00000256452|9|1),INTRON(MODIFIER||||420|IL5RA|protein_coding|CODING|ENST00000446632|8|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	41:0:0:0:0,0:0,0:0,0:41,41	66:1:0:0:0,0:0,0:5,5:60,61
3	3328283	.	A	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||AC026188.1|lincRNA|NON_CODING|ENST00000420000|4|1),INTRON(MODIFIER|||||AC026188.1|lincRNA|NON_CODING|ENST00000451031|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	27:0:0:0:27,27:0,0:0,0:0,0	66:2:0:0:58,59:0,0:6,6:0,0
3	3837705	.	G	A	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||SUMF1|nonsense_mediated_decay|CODING|ENST00000448413|11|1),INTRON(MODIFIER|||||SUMF1|processed_transcript|CODING|ENST00000469888|1|1),INTRON(MODIFIER|||||SUMF1|processed_transcript|CODING|ENST00000470751|1|1),INTRON(MODIFIER|||||SUMF1|processed_transcript|CODING|ENST00000484993|1|1),UPSTREAM(MODIFIER||||716|LRRN1|protein_coding|CODING|ENST00000319331||1),UPSTREAM(MODIFIER|||||LRRN1|processed_transcript|CODING|ENST00000496115||1),UPSTREAM(MODIFIER|||||LRRN1|retained_intron|CODING|ENST00000472075||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:0:0:0:0,0:0,0:36,36:0,0	71:0:0:0:7,7:0,0:64,64:0,0
3	7848358	.	T	C	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	41:0:0:0:0,0:0,0:0,0:41,41	87:4:0:0:0,0:5,6:0,0:78,81
3	10853507	.	A	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER||||208|SLC6A11|protein_coding|CODING|ENST00000454147||1),UPSTREAM(MODIFIER||||632|SLC6A11|protein_coding|CODING|ENST00000254488||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	14:0:0:0:14,16:0,0:0,0:0,0	36:3:0:0:26,28:7,8:0,0:0,0
3	13024654	.	G	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1159|IQSEC1|protein_coding|CODING|ENST00000429247|1|1),INTRON(MODIFIER|||||IQSEC1|processed_transcript|CODING|ENST00000473088|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:4:0:0:0,0:0,0:30,34:0,0	86:0:0:0:10,10:1,1:75,75:0,0
3	13434742	.	G	C	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1887|NUP210|protein_coding|CODING|ENST00000254508|3|1),INTRON(MODIFIER|||||NUP210|retained_intron|CODING|ENST00000420141|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:1:0:0:0,0:0,0:38,39:0,0	67:4:0:0:0,0:6,6:57,61:0,0
3	15187250	rs4482654	A	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=DOWNSTREAM(MODIFIER|||||AC090954.4|processed_pseudogene|NON_CODING|ENST00000454716||1),INTERGENIC(MODIFIER||||||||||1);RSPOS=15187250;dbSNPBuildID=111;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:1:0:0:33,34:0,0:0,2:0,0	66:0:0:0:58,58:0,0:8,13:0,0
3	15435932	.	T	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||284|METTL6|protein_coding|CODING|ENST00000443029|6|1),INTRON(MODIFIER|||||METTL6|processed_transcript|CODING|ENST00000584799|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:0:0:0:0,0:0,0:0,0:31,35	92:1:0:0:0,0:9,9:0,0:82,90
3	17859804	.	C	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||TBC1D5|processed_transcript|CODING|ENST00000414318|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:4:0:0:0,0:34,39:0,0:0,0	65:1:0:0:0,0:57,62:0,0:7,7
3	19351625	.	G	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||MIR4791|miRNA|NON_CODING|ENST00000578171||1),INTRON(MODIFIER||||1107|KCNH8|protein_coding|CODING|ENST00000328405|3|1),INTRON(MODIFIER|||||KCNH8|nonsense_mediated_decay|CODING|ENST00000452398|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:3:0:0:0,0:0,0:29,32:0,0	92:2:0:0:8,8:0,1:82,84:0,0
3	20060197	rs76066520	G	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=20060197;dbSNPBuildID=131;SSR=0;SAO=0;VP=050000000005000102000100;WGT=1;VC=SNV;ASP;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	27:0:0:0:0,0:0,0:27,28:0,0	64:1:0:0:4,4:0,0:58,59:1,1
3	21751378	.	A	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||395|ZNF385D|protein_coding|CODING|ENST00000281523|1|1),INTRON(MODIFIER|||||ZNF385D|nonsense_mediated_decay|CODING|ENST00000446749|1|1),INTRON(MODIFIER|||||ZNF385D|processed_transcript|CODING|ENST00000478967|1|1),INTRON(MODIFIER|||||ZNF385D|processed_transcript|CODING|ENST00000494108|3|1),INTRON(MODIFIER|||||ZNF385D|processed_transcript|CODING|ENST00000494118|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:0:0:0:29,31:0,0:0,0:0,0	83:1:0:0:76,77:0,0:6,6:0,0
3	22554887	.	C	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:0:0:0:1,1:35,35:0,0:0,0	82:0:0:0:0,0:76,78:0,0:6,6
3	23127184	.	A	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:0:0:0:33,34:0,0:0,0:0,0	61:2:0:0:55,57:4,4:0,0:0,0
3	23316933	.	G	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||UBE2E2|nonsense_mediated_decay|CODING|ENST00000427371||1),DOWNSTREAM(MODIFIER|||||Y_RNA|misc_RNA|NON_CODING|ENST00000384001||1),INTRON(MODIFIER||||163|UBE2E2|protein_coding|CODING|ENST00000452894|3|1),INTRON(MODIFIER||||201|UBE2E2|protein_coding|CODING|ENST00000396703|3|1),INTRON(MODIFIER||||201|UBE2E2|protein_coding|CODING|ENST00000425792|3|1),INTRON(MODIFIER|||||UBE2E2|nonsense_mediated_decay|CODING|ENST00000335798|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:0:0:0:1,1:0,0:32,33:0,0	66:1:0:0:0,0:0,0:59,61:6,6
3	25103521	.	A	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||AC133680.1|lincRNA|NON_CODING|ENST00000455576|5|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:1:0:0:29,29:0,1:0,0:0,0	69:2:0:0:63,63:0,0:4,6:0,0
3	26420526	.	C	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	26:0:0:0:0,0:26,26:0,0:0,0	61:0:0:0:6,6:55,55:0,0:0,0
3	26744469	.	G	A	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||162|LRRC3B|protein_coding|CODING|ENST00000432040|1|1),INTRON(MODIFIER||||259|LRRC3B|protein_coding|CODING|ENST00000396641|1|1),INTRON(MODIFIER||||259|LRRC3B|protein_coding|CODING|ENST00000417744|2|1),INTRON(MODIFIER||||259|LRRC3B|protein_coding|CODING|ENST00000456208|2|1),INTRON(MODIFIER||||53|LRRC3B|protein_coding|CODING|ENST00000414619|1|1),INTRON(MODIFIER|||||LRRC3B|processed_transcript|CODING|ENST00000469437|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:0:0:0:0,0:0,0:33,33:0,0	71:2:0:0:8,8:0,0:61,63:0,0
3	26902135	.	A	G	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	42:0:0:0:42,42:0,0:0,0:0,0	74:1:0:0:68,69:1,2:4,4:0,0
3	27278340	.	G	T	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1172|NEK10|protein_coding|CODING|ENST00000429845|24|1),INTRON(MODIFIER||||404|NEK10|protein_coding|CODING|ENST00000357467|5|1),INTRON(MODIFIER||||712|NEK10|protein_coding|CODING|ENST00000341435|24|1),INTRON(MODIFIER|||||NEK10|retained_intron|CODING|ENST00000574215|6|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	41:0:0:0:0,0:0,0:41,41:0,0	71:1:0:0:0,0:0,0:63,65:7,7
3	27628019	.	G	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	43:1:0:0:0,0:0,0:42,45:0,0	67:1:0:0:5,6:1,1:60,63:0,0
3	27969794	.	G	A	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=GG->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	43:0:0:0:0,0:0,0:41,41:2,2	60:1:0:0:6,6:0,0:53,54:0,0
3	28350014	.	A	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||106|CMC1|protein_coding|CODING|ENST00000466830|2|1),INTRON(MODIFIER||||76|CMC1|protein_coding|CODING|ENST00000423894|1|1),INTRON(MODIFIER|||||CMC1|nonsense_mediated_decay|CODING|ENST00000334841|2|1),INTRON(MODIFIER|||||CMC1|processed_transcript|CODING|ENST00000467644|2|1),INTRON(MODIFIER|||||CMC1|processed_transcript|CODING|ENST00000468330|3|1),INTRON(MODIFIER|||||CMC1|processed_transcript|CODING|ENST00000495428|1|1),INTRON(MODIFIER|||||CMC1|retained_intron|CODING|ENST00000396610|1|1),INTRON(MODIFIER|||||CMC1|retained_intron|CODING|ENST00000477739|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:0:0:0:31,32:0,0:1,1:0,0	77:1:0:0:72,73:4,4:0,0:0,0
3	28634839	rs73048860	A	G	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||AC109586.1|antisense|NON_CODING|ENST00000432518|2|1),INTRON(MODIFIER|||||AC109586.1|antisense|NON_CODING|ENST00000443912|1|1),INTRON(MODIFIER|||||AC109586.1|antisense|NON_CODING|ENST00000445077|1|1);RSPOS=28634839;dbSNPBuildID=131;SSR=16;SAO=0;VP=050100080005040502000100;GENEINFO=LOC645206:645206;WGT=1;VC=SNV;SLO;INT;ASP;VLD;HD;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:0:0:0:32,32:0,0:0,0:0,0	86:3:0:0:77,79:0,0:6,6:0,0
3	29181288	.	A	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	28:0:0:0:28,28:0,0:0,0:0,0	74:0:0:0:70,70:0,0:4,4:0,0
3	30312183	.	C	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:2:0:0:0,0:28,30:0,0:0,0	59:3:0:0:0,0:52,55:0,0:4,4
3	33041621	.	A	G	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||546|GLB1|protein_coding|CODING|ENST00000307377|12|1),INTRON(MODIFIER||||647|GLB1|protein_coding|CODING|ENST00000399402|15|1),INTRON(MODIFIER||||677|GLB1|protein_coding|CODING|ENST00000307363|15|1),INTRON(MODIFIER||||725|GLB1|protein_coding|CODING|ENST00000445488|16|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:2:0:0:32,35:0,0:0,0:0,0	72:1:0:0:63,64:1,1:7,9:0,0
3	33054112	.	A	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||GLB1|processed_transcript|CODING|ENST00000461475||1),DOWNSTREAM(MODIFIER|||||GLB1|processed_transcript|CODING|ENST00000467571||1),DOWNSTREAM(MODIFIER|||||GLB1|processed_transcript|CODING|ENST00000497796||1),INTRON(MODIFIER||||546|GLB1|protein_coding|CODING|ENST00000307377|12|1),INTRON(MODIFIER||||647|GLB1|protein_coding|CODING|ENST00000399402|15|1),INTRON(MODIFIER||||677|GLB1|protein_coding|CODING|ENST00000307363|15|1),INTRON(MODIFIER||||725|GLB1|protein_coding|CODING|ENST00000445488|16|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	27:0:0:0:27,27:0,0:0,0:0,0	72:1:0:0:67,68:0,0:0,0:4,4
3	34272448	.	T	C	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||AC018359.1|lincRNA|NON_CODING|ENST00000415991|2|1),INTRON(MODIFIER|||||AC018359.1|lincRNA|NON_CODING|ENST00000424786|2|1),INTRON(MODIFIER|||||AC123023.1|lincRNA|NON_CODING|ENST00000455974|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:0:0:0:0,0:0,0:1,1:36,38	65:1:0:0:0,0:5,5:0,0:59,60
3	34272450	.	A	C	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||AC018359.1|lincRNA|NON_CODING|ENST00000415991|2|1),INTRON(MODIFIER|||||AC018359.1|lincRNA|NON_CODING|ENST00000424786|2|1),INTRON(MODIFIER|||||AC123023.1|lincRNA|NON_CODING|ENST00000455974|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:0:0:0:36,37:0,0:0,0:0,0	65:1:0:0:60,61:4,4:0,0:0,0
3	38411260	.	G	C	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||399|XYLB|protein_coding|CODING|ENST00000542835|6|1),INTRON(MODIFIER||||536|XYLB|protein_coding|CODING|ENST00000207870|8|1),INTRON(MODIFIER|||||XYLB|nonsense_mediated_decay|CODING|ENST00000424034|6|1),INTRON(MODIFIER|||||XYLB|processed_transcript|CODING|ENST00000487569|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:0:0:0:0,0:0,0:39,39:0,0	84:0:0:0:0,0:5,5:79,79:0,0
3	39265237	.	A	G	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:1:0:0:35,36:0,0:0,0:0,0	67:0:0:0:57,58:0,0:10,10:0,0
3	39477660	.	A	G	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:0:0:0:33,33:0,0:0,0:0,0	75:2:0:0:69,71:0,0:4,4:0,0
3	40525493	.	T	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||ZNF619|retained_intron|CODING|ENST00000462961||1),INTRON(MODIFIER||||532|ZNF619|protein_coding|CODING|ENST00000456778|3|1),INTRON(MODIFIER||||560|ZNF619|protein_coding|CODING|ENST00000314686|5|1),INTRON(MODIFIER||||567|ZNF619|protein_coding|CODING|ENST00000522736|4|1),INTRON(MODIFIER||||576|ZNF619|protein_coding|CODING|ENST00000429348|4|1),INTRON(MODIFIER||||576|ZNF619|protein_coding|CODING|ENST00000432264|3|1),INTRON(MODIFIER||||616|ZNF619|protein_coding|CODING|ENST00000447116|5|1),INTRON(MODIFIER||||616|ZNF619|protein_coding|CODING|ENST00000521353|4|1),INTRON(MODIFIER|||||ZNF619|nonsense_mediated_decay|CODING|ENST00000494154|5|1),INTRON(MODIFIER|||||ZNF619|processed_transcript|CODING|ENST00000520737|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:0:0:0:0,0:0,0:0,0:30,30	77:0:0:0:0,0:8,8:1,1:68,70
3	41688869	rs200762909	A	G	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1275|ULK4|protein_coding|CODING|ENST00000301831|30|1),UPSTREAM(MODIFIER|||||AC099537.1|miRNA|NON_CODING|ENST00000408410||1);RSPOS=41688869;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000080005000002000100;WGT=1;VC=SNV;INT;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	41:0:0:0:40,42:1,1:0,0:0,0	79:0:0:0:74,76:0,0:5,5:0,0
3	41688905	.	C	T	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1275|ULK4|protein_coding|CODING|ENST00000301831|30|1),UPSTREAM(MODIFIER|||||AC099537.1|miRNA|NON_CODING|ENST00000408410||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:0:0:0:0,0:40,42:0,0:0,0	81:1:0:0:0,0:74,77:0,0:6,6
3	41688912	.	C	T	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1275|ULK4|protein_coding|CODING|ENST00000301831|30|1),UPSTREAM(MODIFIER|||||AC099537.1|miRNA|NON_CODING|ENST00000408410||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:0:0:0:0,0:38,40:0,0:0,0	80:1:0:0:0,0:74,78:0,0:5,5
3	42117465	.	T	G	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||TRAK1|processed_transcript|CODING|ENST00000487159|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:0:0:0:0,0:0,0:0,0:34,34	79:2:0:0:1,1:0,0:5,5:71,76
3	42117471	.	A	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||TRAK1|processed_transcript|CODING|ENST00000487159|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:0:0:0:30,30:1,1:1,1:0,0	77:1:0:0:65,68:0,0:0,0:11,11
3	42614336	.	C	A	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||106|SEC22C|protein_coding|CODING|ENST00000416880|2|1),INTRON(MODIFIER||||141|SEC22C|protein_coding|CODING|ENST00000450981|2|1),INTRON(MODIFIER||||180|SEC22C|protein_coding|CODING|ENST00000536332|1|1),INTRON(MODIFIER||||228|SEC22C|protein_coding|CODING|ENST00000423701|1|1),INTRON(MODIFIER||||235|SEC22C|protein_coding|CODING|ENST00000456515|1|1),INTRON(MODIFIER||||250|SEC22C|protein_coding|CODING|ENST00000273156|1|1),INTRON(MODIFIER||||250|SEC22C|protein_coding|CODING|ENST00000417572|1|1),INTRON(MODIFIER||||303|SEC22C|protein_coding|CODING|ENST00000264454|1|1),INTRON(MODIFIER||||74|SEC22C|protein_coding|CODING|ENST00000420163|3|1),INTRON(MODIFIER|||||SEC22C|nonsense_mediated_decay|CODING|ENST00000383750|1|1),INTRON(MODIFIER|||||SEC22C|nonsense_mediated_decay|CODING|ENST00000445388|1|1),INTRON(MODIFIER|||||SEC22C|nonsense_mediated_decay|CODING|ENST00000449617|1|1),INTRON(MODIFIER|||||SEC22C|nonsense_mediated_decay|CODING|ENST00000454141|1|1),INTRON(MODIFIER|||||SEC22C|processed_transcript|CODING|ENST00000456222|2|1),INTRON(MODIFIER|||||SEC22C|processed_transcript|CODING|ENST00000493107|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:0:0:0:0,0:36,36:0,0:0,0	87:1:0:0:6,6:80,81:0,0:0,0
3	43615774	.	T	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||161|ANO10|protein_coding|CODING|ENST00000428472||1),INTRON(MODIFIER||||191|ANO10|protein_coding|CODING|ENST00000427171|4|1),INTRON(MODIFIER||||470|ANO10|protein_coding|CODING|ENST00000350459|6|1),INTRON(MODIFIER||||549|ANO10|protein_coding|CODING|ENST00000451430|5|1),INTRON(MODIFIER||||594|ANO10|protein_coding|CODING|ENST00000396091|6|1),INTRON(MODIFIER||||627|ANO10|protein_coding|CODING|ENST00000414522|7|1),INTRON(MODIFIER||||660|ANO10|protein_coding|CODING|ENST00000292246|7|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	28:2:0:0:0,0:0,0:0,0:26,28	61:1:0:0:0,0:0,0:8,8:52,54
3	43649690	.	G	C	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||111|ANO10|protein_coding|CODING|ENST00000428831|2|1),INTRON(MODIFIER||||133|ANO10|protein_coding|CODING|ENST00000439141|2|1),INTRON(MODIFIER||||139|ANO10|protein_coding|CODING|ENST00000413397|1|1),INTRON(MODIFIER||||140|ANO10|protein_coding|CODING|ENST00000456438|2|1),INTRON(MODIFIER||||145|ANO10|protein_coding|CODING|ENST00000444344|1|1),INTRON(MODIFIER||||161|ANO10|protein_coding|CODING|ENST00000428472|1|1),INTRON(MODIFIER||||191|ANO10|protein_coding|CODING|ENST00000427171|1|1),INTRON(MODIFIER||||37|ANO10|protein_coding|CODING|ENST00000436073|2|1),INTRON(MODIFIER||||470|ANO10|protein_coding|CODING|ENST00000350459|1|1),INTRON(MODIFIER||||549|ANO10|protein_coding|CODING|ENST00000451430|1|1),INTRON(MODIFIER||||594|ANO10|protein_coding|CODING|ENST00000396091|1|1),INTRON(MODIFIER||||627|ANO10|protein_coding|CODING|ENST00000414522|1|1),INTRON(MODIFIER||||660|ANO10|protein_coding|CODING|ENST00000292246|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:0:0:0:0,0:0,0:40,40:0,0	89:0:0:0:0,0:5,5:84,84:0,0
3	44194911	.	G	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	28:0:0:0:0,0:0,0:27,27:1,1	74:0:0:0:6,6:0,0:68,68:0,0
3	47967480	.	A	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1135|MAP4|protein_coding|CODING|ENST00000395734|4|1),INTRON(MODIFIER||||1152|MAP4|protein_coding|CODING|ENST00000360240|4|1),INTRON(MODIFIER||||2297|MAP4|protein_coding|CODING|ENST00000426837|5|1),INTRON(MODIFIER||||811|MAP4|protein_coding|CODING|ENST00000383737|4|1),INTRON(MODIFIER|||||MAP4|processed_transcript|CODING|ENST00000482752|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	27:0:0:0:27,28:0,0:0,0:0,0	72:4:0:0:60,62:8,14:0,0:0,0
3	48214332	.	T	C	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||251|CDC25A|protein_coding|CODING|ENST00000443342||1),INTRON(MODIFIER||||484|CDC25A|protein_coding|CODING|ENST00000351231|8|1),INTRON(MODIFIER||||524|CDC25A|protein_coding|CODING|ENST00000302506|9|1),INTRON(MODIFIER|||||CDC25A|processed_transcript|CODING|ENST00000459900|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:0:0:0:0,0:0,0:1,1:33,33	65:0:0:0:0,0:9,9:0,0:56,56
3	48253687	.	C	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	19:1:0:0:0,0:18,32:0,1:0,0	36:3:0:0:0,0:27,52:0,0:6,7
3	49355520	.	T	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||313|USP4|protein_coding|CODING|ENST00000416417|6|1),INTRON(MODIFIER||||363|USP4|protein_coding|CODING|ENST00000415188|6|1),INTRON(MODIFIER||||916|USP4|protein_coding|CODING|ENST00000351842|6|1),INTRON(MODIFIER||||963|USP4|protein_coding|CODING|ENST00000265560|6|1),INTRON(MODIFIER|||||USP4|processed_transcript|CODING|ENST00000462673|1|1),INTRON(MODIFIER|||||USP4|processed_transcript|CODING|ENST00000486549|2|1),INTRON(MODIFIER|||||USP4|processed_transcript|CODING|ENST00000488520|1|1),UPSTREAM(MODIFIER|||||USP4|processed_transcript|CODING|ENST00000461553||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:0:0:0:0,0:0,0:0,0:31,31	69:0:0:0:0,0:7,7:1,1:61,61
3	49486145	.	G	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:0:0:0:0,0:0,0:35,36:0,0	51:2:0:0:0,0:0,0:43,45:6,7
3	49508190	.	G	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||105|DAG1|protein_coding|CODING|ENST00000421560|1|1),INTRON(MODIFIER||||116|DAG1|protein_coding|CODING|ENST00000431960|1|1),INTRON(MODIFIER||||14|DAG1|protein_coding|CODING|ENST00000419218|1|1),INTRON(MODIFIER||||40|DAG1|protein_coding|CODING|ENST00000452317|1|1),INTRON(MODIFIER||||51|DAG1|protein_coding|CODING|ENST00000435508|1|1),INTRON(MODIFIER||||7|DAG1|protein_coding|CODING|ENST00000430636|1|1),INTRON(MODIFIER||||85|DAG1|protein_coding|CODING|ENST00000452060|1|1),INTRON(MODIFIER||||87|DAG1|protein_coding|CODING|ENST00000418588|1|1),INTRON(MODIFIER||||895|DAG1|protein_coding|CODING|ENST00000308775|1|1),INTRON(MODIFIER||||895|DAG1|protein_coding|CODING|ENST00000515359|1|1),INTRON(MODIFIER||||895|DAG1|protein_coding|CODING|ENST00000538711|1|1),INTRON(MODIFIER||||895|DAG1|protein_coding|CODING|ENST00000539901|1|1),INTRON(MODIFIER||||895|DAG1|protein_coding|CODING|ENST00000541308|1|1),INTRON(MODIFIER||||895|DAG1|protein_coding|CODING|ENST00000545947|1|1),INTRON(MODIFIER||||94|DAG1|protein_coding|CODING|ENST00000428779|1|1),INTRON(MODIFIER|||||DAG1|processed_transcript|CODING|ENST00000461492|1|1),INTRON(MODIFIER|||||DAG1|processed_transcript|CODING|ENST00000461987|1|1),INTRON(MODIFIER|||||DAG1|processed_transcript|CODING|ENST00000466701|1|1),INTRON(MODIFIER|||||DAG1|processed_transcript|CODING|ENST00000469139|1|1),INTRON(MODIFIER|||||DAG1|processed_transcript|CODING|ENST00000496474|1|1),UPSTREAM(MODIFIER|||||RNA5SP130|rRNA|NON_CODING|ENST00000364431||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:3:0:0:0,0:0,0:30,33:0,0	83:1:0:0:7,7:0,0:75,76:0,0
3	49517623	.	A	G	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||105|DAG1|protein_coding|CODING|ENST00000421560|1|1),INTRON(MODIFIER||||116|DAG1|protein_coding|CODING|ENST00000431960|2|1),INTRON(MODIFIER||||14|DAG1|protein_coding|CODING|ENST00000419218|1|1),INTRON(MODIFIER||||40|DAG1|protein_coding|CODING|ENST00000452317|1|1),INTRON(MODIFIER||||51|DAG1|protein_coding|CODING|ENST00000435508|1|1),INTRON(MODIFIER||||7|DAG1|protein_coding|CODING|ENST00000430636|1|1),INTRON(MODIFIER||||85|DAG1|protein_coding|CODING|ENST00000452060|2|1),INTRON(MODIFIER||||87|DAG1|protein_coding|CODING|ENST00000418588|2|1),INTRON(MODIFIER||||895|DAG1|protein_coding|CODING|ENST00000308775|1|1),INTRON(MODIFIER||||895|DAG1|protein_coding|CODING|ENST00000515359|1|1),INTRON(MODIFIER||||895|DAG1|protein_coding|CODING|ENST00000538711|2|1),INTRON(MODIFIER||||895|DAG1|protein_coding|CODING|ENST00000539901|1|1),INTRON(MODIFIER||||895|DAG1|protein_coding|CODING|ENST00000541308|1|1),INTRON(MODIFIER||||895|DAG1|protein_coding|CODING|ENST00000545947|3|1),INTRON(MODIFIER||||94|DAG1|protein_coding|CODING|ENST00000428779|3|1),INTRON(MODIFIER|||||DAG1|processed_transcript|CODING|ENST00000461492|1|1),INTRON(MODIFIER|||||DAG1|processed_transcript|CODING|ENST00000461987|2|1),INTRON(MODIFIER|||||DAG1|processed_transcript|CODING|ENST00000466701|1|1),INTRON(MODIFIER|||||DAG1|processed_transcript|CODING|ENST00000469139|1|1),INTRON(MODIFIER|||||DAG1|processed_transcript|CODING|ENST00000496474|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:3:0:0:30,33:0,0:0,0:0,0	64:3:0:0:53,61:0,1:8,10:0,0
3	49517636	.	T	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||105|DAG1|protein_coding|CODING|ENST00000421560|1|1),INTRON(MODIFIER||||116|DAG1|protein_coding|CODING|ENST00000431960|2|1),INTRON(MODIFIER||||14|DAG1|protein_coding|CODING|ENST00000419218|1|1),INTRON(MODIFIER||||40|DAG1|protein_coding|CODING|ENST00000452317|1|1),INTRON(MODIFIER||||51|DAG1|protein_coding|CODING|ENST00000435508|1|1),INTRON(MODIFIER||||7|DAG1|protein_coding|CODING|ENST00000430636|1|1),INTRON(MODIFIER||||85|DAG1|protein_coding|CODING|ENST00000452060|2|1),INTRON(MODIFIER||||87|DAG1|protein_coding|CODING|ENST00000418588|2|1),INTRON(MODIFIER||||895|DAG1|protein_coding|CODING|ENST00000308775|1|1),INTRON(MODIFIER||||895|DAG1|protein_coding|CODING|ENST00000515359|1|1),INTRON(MODIFIER||||895|DAG1|protein_coding|CODING|ENST00000538711|2|1),INTRON(MODIFIER||||895|DAG1|protein_coding|CODING|ENST00000539901|1|1),INTRON(MODIFIER||||895|DAG1|protein_coding|CODING|ENST00000541308|1|1),INTRON(MODIFIER||||895|DAG1|protein_coding|CODING|ENST00000545947|3|1),INTRON(MODIFIER||||94|DAG1|protein_coding|CODING|ENST00000428779|3|1),INTRON(MODIFIER|||||DAG1|processed_transcript|CODING|ENST00000461492|1|1),INTRON(MODIFIER|||||DAG1|processed_transcript|CODING|ENST00000461987|2|1),INTRON(MODIFIER|||||DAG1|processed_transcript|CODING|ENST00000466701|1|1),INTRON(MODIFIER|||||DAG1|processed_transcript|CODING|ENST00000469139|1|1),INTRON(MODIFIER|||||DAG1|processed_transcript|CODING|ENST00000496474|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:2:0:0:0,0:0,0:0,0:29,32	70:4:0:0:0,0:8,8:0,2:58,68
3	51478654	.	A	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AC;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER||||1058|VPRBP|protein_coding|CODING|ENST00000335891|4|1),INTRON(MODIFIER||||375|VPRBP|protein_coding|CODING|ENST00000504652|5|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	42:1:0:0:41,41:0,1:0,0:0,0	71:3:0:0:62,63:6,8:0,0:0,0
3	51760159	.	G	C	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:0:0:0:0,0:0,0:34,35:0,0	76:1:0:0:0,0:5,5:70,72:0,0
3	52866783	.	G	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||294|TMEM110|protein_coding|CODING|ENST00000355083||1),DOWNSTREAM(MODIFIER||||372|TMEM110-MUSTN1|protein_coding|CODING|ENST00000504329||1),DOWNSTREAM(MODIFIER||||39|TMEM110|protein_coding|CODING|ENST00000482155||1),DOWNSTREAM(MODIFIER||||82|MUSTN1|protein_coding|CODING|ENST00000446157||1),DOWNSTREAM(MODIFIER||||87|MUSTN1|protein_coding|CODING|ENST00000486659||1),DOWNSTREAM(MODIFIER|||||MUSTN1|retained_intron|CODING|ENST00000495552||1),INTRON(MODIFIER|||||MUSTN1|nonsense_mediated_decay|CODING|ENST00000468472|4|1),UPSTREAM(MODIFIER||||560|ITIH4|protein_coding|CODING|ENST00000434759||1),UPSTREAM(MODIFIER||||900|ITIH4|protein_coding|CODING|ENST00000406595||1),UPSTREAM(MODIFIER||||914|ITIH4|protein_coding|CODING|ENST00000346281||1),UPSTREAM(MODIFIER||||930|ITIH4|protein_coding|CODING|ENST00000266041||1),UPSTREAM(MODIFIER||||935|ITIH4|protein_coding|CODING|ENST00000485816||1),UPSTREAM(MODIFIER|||||ITIH4|retained_intron|CODING|ENST00000473904||1),UPSTREAM(MODIFIER|||||ITIH4|retained_intron|CODING|ENST00000491663||1),UPSTREAM(MODIFIER|||||ITIH4|retained_intron|CODING|ENST00000537897||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:1:0:0:0,0:0,0:35,36:0,0	61:3:0:0:0,0:0,0:54,57:4,4
3	53959630	.	T	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	27:0:0:0:0,0:0,0:0,0:27,27	78:0:0:0:0,0:0,0:6,7:72,72
3	54261010	.	T	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1091|CACNA2D3|protein_coding|CODING|ENST00000288197|2|1),INTRON(MODIFIER||||1091|CACNA2D3|protein_coding|CODING|ENST00000415676|3|1),INTRON(MODIFIER||||1091|CACNA2D3|protein_coding|CODING|ENST00000474759|2|1),INTRON(MODIFIER||||125|CACNA2D3|protein_coding|CODING|ENST00000492460|1|1),INTRON(MODIFIER||||997|CACNA2D3|protein_coding|CODING|ENST00000490478|1|1),INTRON(MODIFIER|||||CACNA2D3|nonsense_mediated_decay|CODING|ENST00000468658|1|1),INTRON(MODIFIER|||||CACNA2D3|nonsense_mediated_decay|CODING|ENST00000471363|1|1),INTRON(MODIFIER|||||CACNA2D3|nonsense_mediated_decay|CODING|ENST00000477024|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:1:0:0:0,0:0,0:0,0:33,34	85:2:0:0:0,0:5,5:0,0:78,80
3	54297289	.	T	C	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1091|CACNA2D3|protein_coding|CODING|ENST00000288197|2|1),INTRON(MODIFIER||||1091|CACNA2D3|protein_coding|CODING|ENST00000415676|3|1),INTRON(MODIFIER||||1091|CACNA2D3|protein_coding|CODING|ENST00000474759|2|1),INTRON(MODIFIER||||125|CACNA2D3|protein_coding|CODING|ENST00000492460|1|1),INTRON(MODIFIER||||997|CACNA2D3|protein_coding|CODING|ENST00000490478|1|1),INTRON(MODIFIER|||||CACNA2D3|nonsense_mediated_decay|CODING|ENST00000468658|1|1),INTRON(MODIFIER|||||CACNA2D3|nonsense_mediated_decay|CODING|ENST00000471363|1|1),INTRON(MODIFIER|||||CACNA2D3|nonsense_mediated_decay|CODING|ENST00000477024|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:0:0:0:0,0:0,0:0,0:35,35	76:1:0:0:0,0:5,5:0,0:70,72
3	54533356	.	C	G	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1091|CACNA2D3|protein_coding|CODING|ENST00000288197|4|1),INTRON(MODIFIER||||1091|CACNA2D3|protein_coding|CODING|ENST00000415676|5|1),INTRON(MODIFIER||||1091|CACNA2D3|protein_coding|CODING|ENST00000474759|4|1),INTRON(MODIFIER||||125|CACNA2D3|protein_coding|CODING|ENST00000492460|3|1),INTRON(MODIFIER||||997|CACNA2D3|protein_coding|CODING|ENST00000490478|3|1),INTRON(MODIFIER|||||CACNA2D3|nonsense_mediated_decay|CODING|ENST00000468658|3|1),INTRON(MODIFIER|||||CACNA2D3|nonsense_mediated_decay|CODING|ENST00000471363|3|1),INTRON(MODIFIER|||||CACNA2D3|nonsense_mediated_decay|CODING|ENST00000477024|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:1:0:0:0,0:34,35:0,0:0,0	76:0:0:0:0,0:71,71:5,5:0,0
3	54942967	.	T	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1091|CACNA2D3|protein_coding|CODING|ENST00000288197|27|1),INTRON(MODIFIER||||1091|CACNA2D3|protein_coding|CODING|ENST00000415676|28|1),INTRON(MODIFIER||||1091|CACNA2D3|protein_coding|CODING|ENST00000474759|27|1),INTRON(MODIFIER||||997|CACNA2D3|protein_coding|CODING|ENST00000490478|26|1),INTRON(MODIFIER|||||CACNA2D3|nonsense_mediated_decay|CODING|ENST00000471363|24|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	27:0:0:0:0,0:0,0:0,0:27,27	55:0:0:0:0,0:4,4:1,1:50,50
3	54974747	.	C	T	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1091|CACNA2D3|protein_coding|CODING|ENST00000288197|27|1),INTRON(MODIFIER||||1091|CACNA2D3|protein_coding|CODING|ENST00000415676|28|1),INTRON(MODIFIER||||1091|CACNA2D3|protein_coding|CODING|ENST00000474759|27|1),INTRON(MODIFIER||||269|LRTM1|protein_coding|CODING|ENST00000493075|1|1),INTRON(MODIFIER||||997|CACNA2D3|protein_coding|CODING|ENST00000490478|26|1),INTRON(MODIFIER|||||CACNA2D3|nonsense_mediated_decay|CODING|ENST00000471363|24|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:1:0:0:0,1:39,39:0,0:0,0	72:1:0:0:0,0:65,68:0,0:6,6
3	55235663	.	G	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	28:0:0:0:0,0:0,0:28,29:0,0	73:0:0:0:0,0:0,0:63,63:10,10
3	56743242	.	A	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:2:0:0:30,32:0,0:0,0:0,0	81:3:0:0:73,76:0,1:0,0:5,5
3	58042746	.	A	G	.	PASS	NT=ref;QSS=24;QSS_NT=24;SGT=AA->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER||||2150|FLNB|protein_coding|CODING|ENST00000357272|1|1),INTRON(MODIFIER||||2561|FLNB|protein_coding|CODING|ENST00000348383|1|1),INTRON(MODIFIER||||2578|FLNB|protein_coding|CODING|ENST00000358537|1|1),INTRON(MODIFIER||||2591|FLNB|protein_coding|CODING|ENST00000429972|1|1),INTRON(MODIFIER||||2602|FLNB|protein_coding|CODING|ENST00000295956|1|1),INTRON(MODIFIER||||2633|FLNB|protein_coding|CODING|ENST00000490882|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	46:1:0:0:45,45:0,1:0,0:0,0	66:1:0:0:55,56:1,1:9,9:0,0
3	58418475	.	T	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=EXON(MODIFIER|||||PDHB|retained_intron|CODING|ENST00000479945|2|1),INTRON(MODIFIER||||341|PDHB|protein_coding|CODING|ENST00000383714|1|1),INTRON(MODIFIER||||341|PDHB|protein_coding|CODING|ENST00000485460|2|1),INTRON(MODIFIER||||350|PDHB|protein_coding|CODING|ENST00000474765|1|1),INTRON(MODIFIER||||359|PDHB|protein_coding|CODING|ENST00000302746|2|1),INTRON(MODIFIER|||||PDHB|nonsense_mediated_decay|CODING|ENST00000469364|2|1),INTRON(MODIFIER|||||PDHB|retained_intron|CODING|ENST00000461692|1|1),INTRON(MODIFIER|||||PDHB|retained_intron|CODING|ENST00000469827|2|1),INTRON(MODIFIER|||||PDHB|retained_intron|CODING|ENST00000480626|2|1),INTRON(MODIFIER|||||PDHB|retained_intron|CODING|ENST00000482894|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:1:0:0:0,0:0,0:1,1:31,32	74:1:0:0:0,0:9,10:1,1:63,64
3	60331240	.	A	G	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||147|FHIT|protein_coding|CODING|ENST00000341848|1|1),INTRON(MODIFIER||||147|FHIT|protein_coding|CODING|ENST00000468189|5|1),INTRON(MODIFIER||||147|FHIT|protein_coding|CODING|ENST00000476844|5|1),INTRON(MODIFIER||||147|FHIT|protein_coding|CODING|ENST00000492590|5|1),INTRON(MODIFIER||||77|FHIT|protein_coding|CODING|ENST00000488467|6|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:0:0:0:38,38:1,1:0,0:0,0	71:2:0:0:64,66:0,0:5,5:0,0
3	60566640	.	T	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||147|FHIT|protein_coding|CODING|ENST00000468189|4|1),INTRON(MODIFIER||||147|FHIT|protein_coding|CODING|ENST00000476844|4|1),INTRON(MODIFIER||||147|FHIT|protein_coding|CODING|ENST00000492590|4|1),INTRON(MODIFIER||||77|FHIT|protein_coding|CODING|ENST00000488467|5|1),INTRON(MODIFIER|||||FHIT|retained_intron|CODING|ENST00000490952|5|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:1:0:0:0,0:0,0:0,0:33,34	83:0:0:0:5,5:0,0:0,0:78,78
3	60872281	.	A	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||147|FHIT|protein_coding|CODING|ENST00000468189|3|1),INTRON(MODIFIER||||147|FHIT|protein_coding|CODING|ENST00000476844|3|1),INTRON(MODIFIER||||147|FHIT|protein_coding|CODING|ENST00000492590|3|1),INTRON(MODIFIER||||77|FHIT|protein_coding|CODING|ENST00000488467|3|1),INTRON(MODIFIER|||||FHIT|retained_intron|CODING|ENST00000490952|4|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:0:0:0:30,30:0,0:0,0:0,0	74:1:0:0:68,69:0,0:5,5:0,0
3	60935786	.	C	A	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||147|FHIT|protein_coding|CODING|ENST00000468189|3|1),INTRON(MODIFIER||||147|FHIT|protein_coding|CODING|ENST00000476844|3|1),INTRON(MODIFIER||||147|FHIT|protein_coding|CODING|ENST00000492590|3|1),INTRON(MODIFIER||||77|FHIT|protein_coding|CODING|ENST00000488467|3|1),INTRON(MODIFIER|||||FHIT|retained_intron|CODING|ENST00000490952|4|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	28:0:0:0:0,0:28,28:0,0:0,0	60:1:0:0:9,9:50,51:0,0:0,0
3	61840091	.	C	T	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=CC->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER||||1416|PTPRG|protein_coding|CODING|ENST00000295874|2|1),INTRON(MODIFIER||||1445|PTPRG|protein_coding|CODING|ENST00000474889|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	41:0:0:0:0,0:40,40:1,1:0,0	55:1:0:0:0,0:50,52:0,0:4,4
3	62053115	.	G	A	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1416|PTPRG|protein_coding|CODING|ENST00000295874|4|1),INTRON(MODIFIER||||1445|PTPRG|protein_coding|CODING|ENST00000474889|4|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:0:0:0:0,0:0,0:35,35:1,1	63:1:0:0:5,5:1,1:56,57:0,0
3	63184502	.	T	A	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||RP11-601G18.1|processed_pseudogene|NON_CODING|ENST00000475112||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	55:0:0:0:1,2:0,0:1,1:53,90	183:4:0:0:13,23:0,0:1,1:165,258
3	63605834	.	G	T	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||201|SYNPR|protein_coding|CODING|ENST00000465156||1),DOWNSTREAM(MODIFIER||||202|SYNPR|protein_coding|CODING|ENST00000479198||1),DOWNSTREAM(MODIFIER||||265|SYNPR|protein_coding|CODING|ENST00000295894||1),DOWNSTREAM(MODIFIER||||276|SYNPR|protein_coding|CODING|ENST00000460711||1),DOWNSTREAM(MODIFIER||||285|SYNPR|protein_coding|CODING|ENST00000478300||1),DOWNSTREAM(MODIFIER|||||SYNPR|nonsense_mediated_decay|CODING|ENST00000450542||1),DOWNSTREAM(MODIFIER|||||SYNPR|nonsense_mediated_decay|CODING|ENST00000468110||1),DOWNSTREAM(MODIFIER|||||SYNPR|nonsense_mediated_decay|CODING|ENST00000498449||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	43:0:0:0:0,0:0,0:43,43:0,0	63:0:0:0:0,0:0,0:57,57:6,6
3	64462035	rs202108468	G	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=64462035;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:0:0:0:0,0:0,0:32,39:1,1	91:1:0:0:5,12:0,0:85,121:0,0
3	65606514	.	A	C	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1160|MAGI1|protein_coding|CODING|ENST00000497477|2|1),INTRON(MODIFIER||||1256|MAGI1|protein_coding|CODING|ENST00000483466|2|1),INTRON(MODIFIER||||1287|MAGI1|protein_coding|CODING|ENST00000330909|2|1),INTRON(MODIFIER||||1462|MAGI1|protein_coding|CODING|ENST00000402939|2|1),INTRON(MODIFIER|||||MAGI1|processed_transcript|CODING|ENST00000470990|6|1),INTRON(MODIFIER|||||MAGI1|retained_intron|CODING|ENST00000464060|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:0:0:0:35,35:0,0:0,0:0,0	59:0:0:0:52,52:7,7:0,0:0,0
3	67420896	.	G	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||432|SUCLG2|protein_coding|CODING|ENST00000307227||1),INTRON(MODIFIER||||440|SUCLG2|protein_coding|CODING|ENST00000493112|10|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:0:0:0:0,0:0,0:31,31:0,0	57:0:0:0:0,0:5,5:52,52:0,0
3	67875212	.	G	A	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-81N13.1|processed_transcript|NON_CODING|ENST00000482677|3|1),UPSTREAM(MODIFIER|||||AC113171.1|miRNA|NON_CODING|ENST00000581789||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:0:0:0:0,0:0,0:34,34:0,0	79:0:0:0:6,6:0,0:73,73:0,0
3	68131435	.	C	T	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||133|FAM19A1|protein_coding|CODING|ENST00000478136|2|1),INTRON(MODIFIER||||133|FAM19A1|protein_coding|CODING|ENST00000496687|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	41:1:0:0:0,0:40,41:0,0:0,0	83:0:0:0:0,0:73,74:0,0:10,10
3	68168656	.	A	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||133|FAM19A1|protein_coding|CODING|ENST00000478136|2|1),INTRON(MODIFIER||||133|FAM19A1|protein_coding|CODING|ENST00000496687|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:2:0:0:28,30:0,0:0,0:0,0	77:0:0:0:70,70:0,0:0,0:7,7
3	68285937	.	A	G	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||133|FAM19A1|protein_coding|CODING|ENST00000478136|2|1),INTRON(MODIFIER||||133|FAM19A1|protein_coding|CODING|ENST00000496687|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:1:0:0:36,38:0,0:0,0:0,0	80:0:0:0:69,69:0,0:11,11:0,0
3	68447493	.	G	A	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||133|FAM19A1|protein_coding|CODING|ENST00000478136|2|1),INTRON(MODIFIER||||133|FAM19A1|protein_coding|CODING|ENST00000496687|1|1),INTRON(MODIFIER|||||FAM19A1|processed_transcript|CODING|ENST00000491017|4|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:2:0:0:0,0:0,0:31,34:0,0	76:0:0:0:11,11:0,0:65,65:0,0
3	68929446	.	C	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||140|FAM19A4|protein_coding|CODING|ENST00000295569|3|1),INTRON(MODIFIER||||76|FAM19A4|protein_coding|CODING|ENST00000495737|3|1),UPSTREAM(MODIFIER|||||RNA5SP135|rRNA|NON_CODING|ENST00000517019||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	47:1:0:0:1,1:44,45:0,0:1,1	79:1:0:0:6,6:72,73:0,0:0,0
3	68965229	.	G	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||140|FAM19A4|protein_coding|CODING|ENST00000295569|1|1),INTRON(MODIFIER||||76|FAM19A4|protein_coding|CODING|ENST00000495737|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:0:0:0:0,0:0,0:32,32:0,0	86:0:0:0:0,0:0,0:82,83:4,4
3	69795540	.	T	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||520|MITF|protein_coding|CODING|ENST00000352241|1|1),INTRON(MODIFIER||||526|MITF|protein_coding|CODING|ENST00000448226|1|1),INTRON(MODIFIER|||||MITF|processed_transcript|CODING|ENST00000461511|1|1),INTRON(MODIFIER|||||MITF|processed_transcript|CODING|ENST00000495741|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:0:0:0:0,0:0,0:0,0:31,31	78:0:0:0:0,0:6,6:0,0:72,72
3	70744596	.	T	G	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:0:0:0:0,0:0,0:0,0:33,33	92:2:0:0:0,0:0,0:7,7:83,86
3	72661015	.	A	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:2:0:0:34,37:0,0:0,0:0,0	73:0:0:0:69,69:0,0:0,0:4,4
3	75470588	rs202074556	G	C	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||FAM86DP|processed_transcript|NON_CODING|ENST00000459803||1),DOWNSTREAM(MODIFIER|||||FAM86DP|processed_transcript|NON_CODING|ENST00000478666||1),DOWNSTREAM(MODIFIER|||||FAM86DP|processed_transcript|NON_CODING|ENST00000484945||1),DOWNSTREAM(MODIFIER|||||FAM86DP|processed_transcript|NON_CODING|ENST00000489609||1),DOWNSTREAM(MODIFIER|||||FAM86DP|processed_transcript|NON_CODING|ENST00000491583||1),DOWNSTREAM(MODIFIER|||||FAM86DP|processed_transcript|NON_CODING|ENST00000497543||1),DOWNSTREAM(MODIFIER|||||FAM86DP|transcribed_unprocessed_pseudogene|NON_CODING|ENST00000477247||1),INTRON(MODIFIER|||||RP11-803B1.5|unprocessed_pseudogene|NON_CODING|ENST00000515248|7|1);RSPOS=75470588;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:0:0:0:0,0:0,0:40,40:0,0	91:3:0:0:0,0:8,10:79,81:1,1
3	75470654	.	A	G	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||FAM86DP|processed_transcript|NON_CODING|ENST00000459803||1),DOWNSTREAM(MODIFIER|||||FAM86DP|processed_transcript|NON_CODING|ENST00000478666||1),DOWNSTREAM(MODIFIER|||||FAM86DP|processed_transcript|NON_CODING|ENST00000484945||1),DOWNSTREAM(MODIFIER|||||FAM86DP|processed_transcript|NON_CODING|ENST00000489609||1),DOWNSTREAM(MODIFIER|||||FAM86DP|processed_transcript|NON_CODING|ENST00000491583||1),DOWNSTREAM(MODIFIER|||||FAM86DP|processed_transcript|NON_CODING|ENST00000497543||1),DOWNSTREAM(MODIFIER|||||FAM86DP|transcribed_unprocessed_pseudogene|NON_CODING|ENST00000477247||1),INTRON(MODIFIER|||||RP11-803B1.5|unprocessed_pseudogene|NON_CODING|ENST00000515248|7|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:0:0:0:31,31:0,0:0,0:0,0	82:2:0:0:72,73:0,1:8,9:0,0
3	75470673	.	G	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||FAM86DP|processed_transcript|NON_CODING|ENST00000459803||1),DOWNSTREAM(MODIFIER|||||FAM86DP|processed_transcript|NON_CODING|ENST00000478666||1),DOWNSTREAM(MODIFIER|||||FAM86DP|processed_transcript|NON_CODING|ENST00000484945||1),DOWNSTREAM(MODIFIER|||||FAM86DP|processed_transcript|NON_CODING|ENST00000489609||1),DOWNSTREAM(MODIFIER|||||FAM86DP|processed_transcript|NON_CODING|ENST00000491583||1),DOWNSTREAM(MODIFIER|||||FAM86DP|processed_transcript|NON_CODING|ENST00000497543||1),DOWNSTREAM(MODIFIER|||||FAM86DP|transcribed_unprocessed_pseudogene|NON_CODING|ENST00000477247||1),INTRON(MODIFIER|||||RP11-803B1.5|unprocessed_pseudogene|NON_CODING|ENST00000515248|7|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:0:0:0:0,0:0,0:30,30:0,0	82:1:0:0:0,0:7,7:74,75:0,0
3	75750165	rs147945001	G	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=75750165;dbSNPBuildID=134;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	21:1:0:0:0,0:0,0:20,23:0,0	42:1:0:0:0,0:0,0:33,34:8,8
3	75817614	.	T	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||109|ZNF717|protein_coding|CODING|ENST00000468296|2|1),INTRON(MODIFIER||||114|ZNF717|protein_coding|CODING|ENST00000477374|2|1),INTRON(MODIFIER||||59|ZNF717|protein_coding|CODING|ENST00000471541|2|1),INTRON(MODIFIER||||864|ZNF717|protein_coding|CODING|ENST00000478296|1|1),INTRON(MODIFIER||||907|ZNF717|protein_coding|CODING|ENST00000400845|2|1),INTRON(MODIFIER||||914|ZNF717|protein_coding|CODING|ENST00000422325|2|1),INTRON(MODIFIER|||||ZNF717|processed_transcript|CODING|ENST00000491507|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:2:0:0:0,0:1,1:1,1:35,37	54:2:0:0:0,0:9,10:0,0:43,46
3	75857407	rs77331139	T	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=75857407;dbSNPBuildID=131;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:0:0:0:0,0:0,0:0,0:33,33	72:0:0:0:0,0:5,8:0,0:67,67
3	76252528	.	G	T	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1394|ROBO2|protein_coding|CODING|ENST00000487694|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	45:1:0:0:0,0:0,0:44,45:0,0	74:3:0:0:0,0:0,2:66,69:5,5
3	77159229	.	T	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1378|ROBO2|protein_coding|CODING|ENST00000461745|2|1),INTRON(MODIFIER||||1394|ROBO2|protein_coding|CODING|ENST00000487694|3|1),INTRON(MODIFIER||||1439|ROBO2|protein_coding|CODING|ENST00000332191|2|1),INTRON(MODIFIER|||||ROBO2|nonsense_mediated_decay|CODING|ENST00000473767|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:1:0:0:0,0:0,0:0,0:30,31	78:1:0:0:0,0:0,0:4,4:73,74
3	77288457	.	G	A	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1378|ROBO2|protein_coding|CODING|ENST00000461745|2|1),INTRON(MODIFIER||||1394|ROBO2|protein_coding|CODING|ENST00000487694|3|1),INTRON(MODIFIER||||1439|ROBO2|protein_coding|CODING|ENST00000332191|2|1),INTRON(MODIFIER|||||ROBO2|nonsense_mediated_decay|CODING|ENST00000473767|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:1:0:0:0,0:0,0:36,37:0,0	74:3:0:0:6,6:0,1:65,68:0,0
3	79611282	.	C	A	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1651|ROBO1|protein_coding|CODING|ENST00000464233|2|1),INTRON(MODIFIER|||||ROBO1|nonsense_mediated_decay|CODING|ENST00000492990|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:0:0:0:0,0:33,33:0,0:0,0	66:0:0:0:5,5:61,61:0,0:0,0
3	81928434	.	G	A	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-359D24.1|lincRNA|NON_CODING|ENST00000471614|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:1:0:0:0,0:0,0:37,38:0,0	79:1:0:0:5,9:0,0:73,74:0,0
3	82965706	.	G	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:1:2:0:0,1:0,0:30,38:0,0	91:3:10:0:5,8:0,0:80,110:3,5
3	85445762	.	C	G	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||404|CADM2|protein_coding|CODING|ENST00000383699|1|1),INTRON(MODIFIER||||435|CADM2|protein_coding|CODING|ENST00000407528|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:0:0:0:0,0:33,33:0,0:0,0	75:0:0:0:1,1:69,69:5,5:0,0
3	85818519	rs186778543	T	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||404|CADM2|protein_coding|CODING|ENST00000383699|2|1),INTRON(MODIFIER||||435|CADM2|protein_coding|CODING|ENST00000407528|1|1),INTRON(MODIFIER||||437|CADM2|protein_coding|CODING|ENST00000405615|1|1);RSPOS=85818519;GMAF=0.0266;dbSNPBuildID=135;SSR=0;SAO=0;VP=050000080005000014000100;GENEINFO=CADM2:253559;WGT=1;VC=SNV;INT;ASP;KGPhase1;KGPROD	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:3:0:0:0,0:0,0:0,0:31,39	94:5:0:0:1,1:5,6:1,1:82,101
3	86063607	.	A	C	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=EXON(MODIFIER|||||PRKRIRP2|processed_pseudogene|NON_CODING|ENST00000489193|2|1),INTRON(MODIFIER||||404|CADM2|protein_coding|CODING|ENST00000383699|8|1),INTRON(MODIFIER||||435|CADM2|protein_coding|CODING|ENST00000407528|8|1),INTRON(MODIFIER||||437|CADM2|protein_coding|CODING|ENST00000405615|8|1),INTRON(MODIFIER|||||CADM2-AS1|antisense|NON_CODING|ENST00000476021|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:0:0:0:35,35:0,0:0,0:0,0	63:0:0:0:57,57:6,6:0,0:0,0
3	87780339	.	C	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||RP11-451B8.1|lincRNA|NON_CODING|ENST00000462792||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:0:0:0:0,0:33,34:0,0:0,0	70:1:0:0:0,0:65,67:0,0:4,4
3	88341745	.	G	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	28:0:0:0:0,0:0,0:28,28:0,0	83:0:0:0:0,0:7,7:76,76:0,0
3	89817613	.	G	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:1:0:0:0,0:0,0:28,30:0,0	76:1:0:0:0,0:0,0:67,67:8,9
3	90382759	.	C	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	45:2:0:0:0,2:42,48:1,1:0,2	91:10:0:0:0,5:75,91:0,0:6,18
3	90453073	.	T	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	58:4:0:0:0,0:0,5:0,0:54,109	125:9:0:0:1,1:6,13:0,0:109,235
3	90453127	.	A	G	.	PASS	NT=ref;QSS=26;QSS_NT=26;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	55:2:0:0:53,100:0,0:0,5:0,2	135:10:0:0:118,238:0,0:7,14:0,0
3	94044699	.	G	T	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:0:0:0:0,0:0,0:35,35:0,0	68:1:0:0:0,0:1,1:60,61:6,7
3	94648764	.	A	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:2:0:0:28,54:0,0:0,0:0,1	83:3:0:0:70,120:0,0:9,11:1,2
3	96457643	.	A	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:0:0:0:30,30:0,0:0,0:0,0	83:1:0:0:76,77:6,6:0,0:0,0
3	99583827	.	G	A	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1133|FILIP1L|protein_coding|CODING|ENST00000331335|4|1),INTRON(MODIFIER||||1135|FILIP1L|protein_coding|CODING|ENST00000354552|4|1),INTRON(MODIFIER||||24|C3orf26|protein_coding|CODING|ENST00000463526|1|1),INTRON(MODIFIER||||279|C3orf26|protein_coding|CODING|ENST00000421999|1|1),INTRON(MODIFIER||||836|FILIP1L|protein_coding|CODING|ENST00000495625|2|1),INTRON(MODIFIER||||893|FILIP1L|protein_coding|CODING|ENST00000383694|1|1),INTRON(MODIFIER||||895|FILIP1L|protein_coding|CODING|ENST00000471562|1|1),INTRON(MODIFIER|||||C3orf26|nonsense_mediated_decay|CODING|ENST00000491299|1|1),INTRON(MODIFIER|||||C3orf26|processed_transcript|CODING|ENST00000496116|1|1),INTRON(MODIFIER|||||FILIP1L|processed_transcript|CODING|ENST00000476723|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:1:0:0:0,0:0,0:35,35:0,1	71:3:0:0:4,4:0,0:64,67:0,0
3	101444721	rs201376203	G	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||806|CEP97|protein_coding|CODING|ENST00000494050|1|1),INTRON(MODIFIER||||865|CEP97|protein_coding|CODING|ENST00000341893|1|1),INTRON(MODIFIER||||891|CEP97|protein_coding|CODING|ENST00000327230|1|1),INTRON(MODIFIER|||||CEP97|nonsense_mediated_decay|CODING|ENST00000465011|1|1),INTRON(MODIFIER|||||CEP97|retained_intron|CODING|ENST00000489172|1|1),UPSTREAM(MODIFIER|||||CEP97|nonsense_mediated_decay|CODING|ENST00000467655||1);RSPOS=101444721;RV;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000080001000402000100;WGT=1;VC=SNV;INT;HD;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:3:0:0:0,0:0,0:30,33:0,0	73:1:0:0:0,0:0,0:64,65:8,8
3	105381894	rs36158855	T	C	.	PASS	NT=ref;QSS=27;QSS_NT=27;SGT=TT->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER||||197|CBLB|protein_coding|CODING|ENST00000407712|3|1),INTRON(MODIFIER||||321|CBLB|protein_coding|CODING|ENST00000394030|6|1),INTRON(MODIFIER||||960|CBLB|protein_coding|CODING|ENST00000394027|17|1),INTRON(MODIFIER||||982|CBLB|protein_coding|CODING|ENST00000264122|18|1),INTRON(MODIFIER|||||CBLB|retained_intron|CODING|ENST00000476370|1|1);RSPOS=105381894;dbSNPBuildID=126;SSR=0;SAO=0;VP=050000080001000002000100;GENEINFO=CBLB:868;WGT=1;VC=SNV;INT;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:0:0:0:0,0:0,1:0,0:39,39	77:1:0:0:0,0:13,15:0,0:63,63
3	106175252	.	T	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:1:0:0:0,0:0,0:0,0:29,30	55:0:0:0:0,0:5,5:0,0:50,50
3	106582880	.	C	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-280F2.2|processed_transcript|NON_CODING|ENST00000484698|6|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:0:0:0:0,0:35,35:0,0:0,0	78:0:0:0:0,0:73,74:0,0:5,5
3	106690873	.	C	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-280F2.2|processed_transcript|NON_CODING|ENST00000484698|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	28:1:0:0:0,0:27,28:0,0:0,0	75:1:0:0:0,0:69,70:5,5:0,0
3	108861009	.	T	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-59E19.1|lincRNA|NON_CODING|ENST00000467240|2|1),INTRON(MODIFIER|||||RP11-59E19.1|lincRNA|NON_CODING|ENST00000477643|1|1),INTRON(MODIFIER|||||RP11-59E19.1|lincRNA|NON_CODING|ENST00000479039|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	27:0:0:0:0,0:0,0:0,0:27,27	77:0:0:0:0,0:4,4:0,0:73,73
3	109546396	.	C	A	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:0:0:0:0,0:36,36:0,0:0,0	81:0:0:0:4,4:77,77:0,0:0,0
3	110098448	.	C	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:0:0:0:0,0:30,30:0,0:0,0	69:0:0:0:0,0:60,60:0,0:9,9
3	110603682	.	G	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||106|RP11-553A10.1|protein_coding|CODING|ENST00000485473||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:0:0:0:0,0:0,0:30,31:0,0	57:2:0:0:5,5:0,0:50,52:0,0
3	111433625	.	G	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||304|PLCXD2|protein_coding|CODING|ENST00000393934|3|1),INTRON(MODIFIER||||305|PLCXD2|protein_coding|CODING|ENST00000477665|3|1),INTRON(MODIFIER|||||PLCXD2|processed_transcript|CODING|ENST00000472215|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:0:0:0:0,0:0,0:31,31:0,0	71:1:0:0:6,6:0,0:64,64:0,1
3	113956941	.	G	A	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||RP11-553L6.2|processed_transcript|NON_CODING|ENST00000481773||1),DOWNSTREAM(MODIFIER|||||RP11-553L6.2|retained_intron|NON_CODING|ENST00000493033||1),INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER||||273|ZNF80|protein_coding|CODING|ENST00000482457||1),UPSTREAM(MODIFIER|||||ZNF80|nonsense_mediated_decay|CODING|ENST00000308095||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:2:0:0:0,0:0,1:36,38:0,0	83:1:0:0:6,7:1,1:75,75:0,0
3	114911791	.	T	C	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:0:0:0:0,0:0,0:0,0:36,37	76:2:0:0:0,0:6,6:0,1:68,69
3	114928246	.	T	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	28:0:0:0:0,0:0,0:0,0:28,28	79:1:0:0:0,0:0,0:9,9:69,70
3	115357300	.	T	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||238|GAP43|protein_coding|CODING|ENST00000305124|1|1),INTRON(MODIFIER||||274|GAP43|protein_coding|CODING|ENST00000393780|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:2:0:0:0,0:0,0:0,0:36,39	94:0:0:0:4,4:0,0:0,0:90,90
3	115474710	.	C	A	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:2:0:0:0,0:36,38:0,0:1,1	76:0:0:0:5,5:71,71:0,0:0,0
3	115572698	.	T	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||338|LSAMP|protein_coding|CODING|ENST00000490035|3|1),INTRON(MODIFIER||||345|LSAMP|protein_coding|CODING|ENST00000333617|3|1),INTRON(MODIFIER||||358|LSAMP|protein_coding|CODING|ENST00000539563|4|1),INTRON(MODIFIER|||||LSAMP|processed_transcript|CODING|ENST00000498645|2|1),UPSTREAM(MODIFIER|||||LSAMP|retained_intron|CODING|ENST00000473171||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:1:0:0:0,0:0,0:0,0:29,30	64:0:0:0:0,0:4,4:0,0:60,60
3	116034621	.	A	G	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||204|LSAMP|protein_coding|CODING|ENST00000474851|3|1),INTRON(MODIFIER||||338|LSAMP|protein_coding|CODING|ENST00000490035|1|1),INTRON(MODIFIER||||345|LSAMP|protein_coding|CODING|ENST00000333617|1|1),INTRON(MODIFIER||||358|LSAMP|protein_coding|CODING|ENST00000539563|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:0:0:0:40,40:0,0:0,0:0,0	76:1:0:0:67,68:0,0:8,8:0,0
3	117158586	.	C	A	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||358|LSAMP|protein_coding|CODING|ENST00000539563|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:0:0:0:0,0:35,35:0,0:0,0	74:1:0:0:7,7:66,67:0,0:0,0
3	117692389	.	A	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||358|LSAMP|protein_coding|CODING|ENST00000539563|1|1),INTRON(MODIFIER|||||RP11-384F7.2|processed_transcript|NON_CODING|ENST00000484092|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:0:0:0:29,29:0,0:0,0:0,0	85:1:0:0:78,79:0,0:0,0:6,6
3	117796198	.	A	G	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-384F7.1|lincRNA|NON_CODING|ENST00000482142|5|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	49:0:0:0:49,49:0,0:0,0:0,0	79:0:0:0:75,75:0,0:4,4:0,0
3	118994894	.	C	T	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||B4GALT4-AS1|antisense|NON_CODING|ENST00000470790|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:0:0:0:1,1:38,38:1,1:0,0	83:0:0:0:0,0:74,74:0,0:9,9
3	119436398	rs76102348	T	G	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||238|C3orf15|protein_coding|CODING|ENST00000463700||1),INTRON(MODIFIER||||767|C3orf15|protein_coding|CODING|ENST00000273390|6|1),INTRON(MODIFIER|||||C3orf15|nonsense_mediated_decay|CODING|ENST00000475093|4|1),INTRON(MODIFIER|||||C3orf15|nonsense_mediated_decay|CODING|ENST00000482573|5|1),INTRON(MODIFIER|||||C3orf15|nonsense_mediated_decay|CODING|ENST00000482927|6|1),INTRON(MODIFIER|||||C3orf15|nonsense_mediated_decay|CODING|ENST00000498167|4|1),INTRON(MODIFIER|||||C3orf15|retained_intron|CODING|ENST00000468630|6|1),INTRON(MODIFIER|||||C3orf15|retained_intron|CODING|ENST00000483134|5|1);RSPOS=119436398;dbSNPBuildID=131;SSR=16;SAO=0;VP=050100080015000102000100;GENEINFO=C3orf15:89876;WGT=1;VC=SNV;SLO;INT;OTH;ASP;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:0:0:0:0,0:0,0:0,0:35,35	66:0:0:0:0,0:0,0:5,5:61,61
3	120024582	.	G	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||RP11-174O3.1|processed_pseudogene|NON_CODING|ENST00000498792||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:1:0:0:0,0:0,0:28,29:0,0	61:1:0:0:1,1:0,0:52,53:7,7
3	120133275	.	C	T	.	PASS	NT=ref;QSS=37;QSS_NT=37;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||138|FSTL1|protein_coding|CODING|ENST00000469005|3|1),INTRON(MODIFIER||||273|FSTL1|protein_coding|CODING|ENST00000424703|2|1),INTRON(MODIFIER||||308|FSTL1|protein_coding|CODING|ENST00000295633|3|1),INTRON(MODIFIER|||||FSTL1|retained_intron|CODING|ENST00000464690|3|1),UPSTREAM(MODIFIER|||||FSTL1|retained_intron|CODING|ENST00000468098||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	80:4:0:0:0,0:76,95:0,0:0,0	202:11:0:0:0,0:183,251:0,1:8,9
3	120133286	.	A	T	.	PASS	NT=ref;QSS=35;QSS_NT=35;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||138|FSTL1|protein_coding|CODING|ENST00000469005|3|1),INTRON(MODIFIER||||273|FSTL1|protein_coding|CODING|ENST00000424703|2|1),INTRON(MODIFIER||||308|FSTL1|protein_coding|CODING|ENST00000295633|3|1),INTRON(MODIFIER|||||FSTL1|retained_intron|CODING|ENST00000464690|3|1),UPSTREAM(MODIFIER|||||FSTL1|retained_intron|CODING|ENST00000468098||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	79:4:0:0:71,89:3,5:1,1:0,0	201:8:0:0:178,228:2,5:4,8:9,21
3	120133317	.	A	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||138|FSTL1|protein_coding|CODING|ENST00000469005|3|1),INTRON(MODIFIER||||273|FSTL1|protein_coding|CODING|ENST00000424703|2|1),INTRON(MODIFIER||||308|FSTL1|protein_coding|CODING|ENST00000295633|3|1),INTRON(MODIFIER|||||FSTL1|retained_intron|CODING|ENST00000464690|3|1),UPSTREAM(MODIFIER|||||FSTL1|retained_intron|CODING|ENST00000468098||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	63:2:0:0:59,73:0,0:2,2:0,0	148:3:0:0:136,184:0,1:9,9:0,0
3	120280832	.	A	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:0:0:0:31,32:0,0:1,1:0,0	75:0:0:0:68,68:0,0:0,0:7,7
3	121116614	.	A	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1000|STXBP5L|protein_coding|CODING|ENST00000497029|23|1),INTRON(MODIFIER||||1002|STXBP5L|protein_coding|CODING|ENST00000472879|22|1),INTRON(MODIFIER||||1026|STXBP5L|protein_coding|CODING|ENST00000492541|23|1),INTRON(MODIFIER||||1128|STXBP5L|protein_coding|CODING|ENST00000471262|21|1),INTRON(MODIFIER||||1162|STXBP5L|protein_coding|CODING|ENST00000471454|22|1),INTRON(MODIFIER||||1186|STXBP5L|protein_coding|CODING|ENST00000273666|23|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	27:0:0:0:27,27:0,0:0,0:0,0	63:0:0:0:55,55:0,0:8,13:0,0
3	121489965	.	T	C	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||465|IQCB1|protein_coding|CODING|ENST00000349820|11|1),INTRON(MODIFIER||||598|IQCB1|protein_coding|CODING|ENST00000310864|14|1),INTRON(MODIFIER|||||IQCB1|nonsense_mediated_decay|CODING|ENST00000393650|13|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:0:0:0:0,0:0,0:0,0:34,34	58:0:0:0:0,0:6,6:0,0:52,54
3	122407033	.	C	G	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1801|PARP14|protein_coding|CODING|ENST00000474629|3|1),INTRON(MODIFIER|||||PARP14|processed_transcript|CODING|ENST00000483611|1|1),UPSTREAM(MODIFIER|||||PARP14|nonsense_mediated_decay|CODING|ENST00000460683||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:1:0:0:0,0:30,31:0,0:0,0	47:2:0:0:0,0:41,42:4,5:0,0
3	122498966	.	G	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||225|HSPBAP1|protein_coding|CODING|ENST00000383659|1|1),INTRON(MODIFIER||||488|HSPBAP1|protein_coding|CODING|ENST00000306103|1|1),INTRON(MODIFIER|||||HSPBAP1|processed_transcript|CODING|ENST00000465044|1|1),INTRON(MODIFIER|||||HSPBAP1|processed_transcript|CODING|ENST00000467643|1|1),INTRON(MODIFIER|||||HSPBAP1|processed_transcript|CODING|ENST00000478601|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:1:0:0:1,1:0,0:31,34:0,0	56:1:0:0:13,13:0,0:42,46:0,0
3	123696848	.	C	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||58|ROPN1|protein_coding|CODING|ENST00000459660||1),DOWNSTREAM(MODIFIER||||58|ROPN1|protein_coding|CODING|ENST00000479867||1),DOWNSTREAM(MODIFIER||||58|ROPN1|protein_coding|CODING|ENST00000484329||1),DOWNSTREAM(MODIFIER||||58|ROPN1|protein_coding|CODING|ENST00000495093||1),DOWNSTREAM(MODIFIER||||61|ROPN1|protein_coding|CODING|ENST00000480459||1),DOWNSTREAM(MODIFIER||||61|ROPN1|protein_coding|CODING|ENST00000498333||1),INTRON(MODIFIER||||101|ROPN1|protein_coding|CODING|ENST00000495336|5|1),INTRON(MODIFIER||||115|ROPN1|protein_coding|CODING|ENST00000460743|4|1),INTRON(MODIFIER||||128|ROPN1|protein_coding|CODING|ENST00000467907|3|1),INTRON(MODIFIER||||212|ROPN1|protein_coding|CODING|ENST00000184183|3|1),INTRON(MODIFIER||||212|ROPN1|protein_coding|CODING|ENST00000405845|2|1),INTRON(MODIFIER||||76|ROPN1|protein_coding|CODING|ENST00000496145|3|1),INTRON(MODIFIER|||||ROPN1|retained_intron|CODING|ENST00000487124|2|1),UPSTREAM(MODIFIER|||||ROPN1|nonsense_mediated_decay|CODING|ENST00000484813||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:0:0:0:0,0:34,34:0,0:0,0	78:0:0:0:0,0:69,69:0,0:9,9
3	124431172	rs332510	G	A	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1257|KALRN|protein_coding|CODING|ENST00000428018|23|1),INTRON(MODIFIER||||1289|KALRN|protein_coding|CODING|ENST00000291478|24|1),INTRON(MODIFIER||||2986|KALRN|protein_coding|CODING|ENST00000360013|57|1);RSPOS=124431172;RV;GMAF=0.37;dbSNPBuildID=79;SSR=0;SAO=0;VP=05010008000507051f000101;GENEINFO=KALRN:8997;WGT=1;VC=SNV;SLO;INT;ASP;VLD;G5A;G5;HD;GNO;KGPhase1;KGPilot123;KGPROD;OTHERKG;PH3;GCF	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:1:0:0:0,0:0,0:38,39:0,0	86:2:0:0:6,8:0,0:78,79:0,0
3	125193468	.	T	A	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||SNX4|nonsense_mediated_decay|CODING|ENST00000465505||1),INTRON(MODIFIER||||305|SNX4|protein_coding|CODING|ENST00000536067|7|1),INTRON(MODIFIER||||450|SNX4|protein_coding|CODING|ENST00000251775|8|1),INTRON(MODIFIER|||||SNX4|nonsense_mediated_decay|CODING|ENST00000471751|7|1),INTRON(MODIFIER|||||SNX4|processed_transcript|CODING|ENST00000473417|6|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:0:0:0:0,0:0,0:0,0:34,34	86:1:0:0:8,9:0,0:0,0:77,78
3	126254290	.	T	C	.	PASS	NT=ref;QSS=23;QSS_NT=23;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||341|CHST13|protein_coding|CODING|ENST00000319340|1|1),INTRON(MODIFIER|||||C3orf22|nonsense_mediated_decay|CODING|ENST00000505070|4|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	48:2:0:0:0,0:0,0:0,1:46,48	76:6:0:0:0,0:6,7:3,4:61,67
3	127023232	.	A	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AC;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:2:0:0:29,30:1,2:0,0:0,0	43:4:0:0:30,32:9,11:0,0:0,0
3	128415583	.	A	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:3:0:0:29,32:0,0:0,0:0,0	67:4:0:0:54,57:1,2:8,8:0,0
3	128426047	.	A	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:0:0:0:30,31:0,0:0,0:0,0	63:1:0:0:56,56:0,0:6,7:0,0
3	129082212	.	G	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:8:0:0:0,0:0,0:29,37:0,0	63:7:0:0:0,0:6,10:50,59:0,0
3	129260683	.	T	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER||||346|H1FOO|protein_coding|CODING|ENST00000324382||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	27:0:0:0:0,0:0,0:0,0:27,27	58:0:0:0:0,0:6,6:0,0:52,52
3	129425222	.	T	C	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||474|TMCC1|protein_coding|CODING|ENST00000329333|1|1),INTRON(MODIFIER||||539|TMCC1|protein_coding|CODING|ENST00000426664|3|1),INTRON(MODIFIER||||653|TMCC1|protein_coding|CODING|ENST00000393238|3|1),INTRON(MODIFIER||||82|TMCC1|protein_coding|CODING|ENST00000505616|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:0:0:0:0,0:0,0:0,0:37,37	68:2:0:0:0,0:6,7:0,0:60,62
3	129425238	.	A	G	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||474|TMCC1|protein_coding|CODING|ENST00000329333|1|1),INTRON(MODIFIER||||539|TMCC1|protein_coding|CODING|ENST00000426664|3|1),INTRON(MODIFIER||||653|TMCC1|protein_coding|CODING|ENST00000393238|3|1),INTRON(MODIFIER||||82|TMCC1|protein_coding|CODING|ENST00000505616|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:1:0:0:31,32:0,0:0,0:0,0	80:2:0:0:70,72:0,1:8,8:0,0
3	130202213	.	A	C	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||2526|COL6A5|protein_coding|CODING|ENST00000432398|39|1),INTRON(MODIFIER||||2615|COL6A5|protein_coding|CODING|ENST00000265379|41|1),INTRON(MODIFIER||||557|COL6A5|protein_coding|CODING|ENST00000373157|6|1),INTRON(MODIFIER|||||COL6A5|nonsense_mediated_decay|CODING|ENST00000312481|41|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:1:0:0:35,36:0,0:0,0:0,0	86:1:0:0:76,77:9,9:0,0:0,0
3	130855617	.	A	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||NEK11|retained_intron|CODING|ENST00000506695||1),INTRON(MODIFIER||||461|NEK11|protein_coding|CODING|ENST00000412440|5|1),INTRON(MODIFIER||||470|NEK11|protein_coding|CODING|ENST00000511262|7|1),INTRON(MODIFIER||||482|NEK11|protein_coding|CODING|ENST00000356918|6|1),INTRON(MODIFIER||||482|NEK11|protein_coding|CODING|ENST00000507910|6|1),INTRON(MODIFIER||||540|NEK11|protein_coding|CODING|ENST00000510769|6|1),INTRON(MODIFIER||||599|NEK11|protein_coding|CODING|ENST00000510688|6|1),INTRON(MODIFIER||||645|NEK11|protein_coding|CODING|ENST00000383366|7|1),INTRON(MODIFIER||||645|NEK11|protein_coding|CODING|ENST00000429253|6|1),INTRON(MODIFIER||||645|NEK11|protein_coding|CODING|ENST00000508196|5|1),INTRON(MODIFIER|||||NEK11|nonsense_mediated_decay|CODING|ENST00000510474|5|1),INTRON(MODIFIER|||||NEK11|nonsense_mediated_decay|CODING|ENST00000514915|7|1),INTRON(MODIFIER|||||NEK11|processed_transcript|CODING|ENST00000426022|5|1),INTRON(MODIFIER|||||NEK11|processed_transcript|CODING|ENST00000510926|4|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:0:0:0:31,31:0,0:0,0:0,0	72:0:0:0:67,68:0,0:5,5:0,0
3	130872602	.	C	T	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||NEK11|processed_transcript|CODING|ENST00000426022||1),INTRON(MODIFIER||||461|NEK11|protein_coding|CODING|ENST00000412440|7|1),INTRON(MODIFIER||||470|NEK11|protein_coding|CODING|ENST00000511262|9|1),INTRON(MODIFIER||||482|NEK11|protein_coding|CODING|ENST00000356918|8|1),INTRON(MODIFIER||||482|NEK11|protein_coding|CODING|ENST00000507910|8|1),INTRON(MODIFIER||||540|NEK11|protein_coding|CODING|ENST00000510769|6|1),INTRON(MODIFIER||||599|NEK11|protein_coding|CODING|ENST00000510688|8|1),INTRON(MODIFIER||||645|NEK11|protein_coding|CODING|ENST00000383366|9|1),INTRON(MODIFIER||||645|NEK11|protein_coding|CODING|ENST00000429253|8|1),INTRON(MODIFIER||||645|NEK11|protein_coding|CODING|ENST00000508196|7|1),INTRON(MODIFIER|||||NEK11|nonsense_mediated_decay|CODING|ENST00000510474|7|1),INTRON(MODIFIER|||||NEK11|nonsense_mediated_decay|CODING|ENST00000514915|9|1),INTRON(MODIFIER|||||NEK11|processed_transcript|CODING|ENST00000510926|6|1),UPSTREAM(MODIFIER|||||NEK11|retained_intron|CODING|ENST00000515636||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:0:0:0:0,0:40,40:0,0:0,0	77:0:0:0:0,0:73,73:0,0:4,4
3	132518741	.	A	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||NPHP3-AS1|processed_transcript|NON_CODING|ENST00000504440|4|1),INTRON(MODIFIER|||||RP11-39E4.1|antisense|NON_CODING|ENST00000463373|4|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:1:0:0:30,32:0,0:0,0:0,0	74:0:0:0:70,70:0,0:0,0:4,4
3	133604079	.	T	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||123|RAB6B|protein_coding|CODING|ENST00000477759|2|1),INTRON(MODIFIER||||195|RAB6B|protein_coding|CODING|ENST00000486858|2|1),INTRON(MODIFIER||||208|RAB6B|protein_coding|CODING|ENST00000285208|1|1),INTRON(MODIFIER||||208|RAB6B|protein_coding|CODING|ENST00000543906|1|1),INTRON(MODIFIER||||48|RAB6B|protein_coding|CODING|ENST00000488969|1|1),INTRON(MODIFIER||||71|RAB6B|protein_coding|CODING|ENST00000469959|1|1),INTRON(MODIFIER||||82|RAB6B|protein_coding|CODING|ENST00000460865|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:2:0:0:0,1:0,0:0,0:29,30	58:4:0:0:1,2:4,4:1,1:48,52
3	134672735	.	C	G	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||101|EPHB1|protein_coding|CODING|ENST00000473867||1),DOWNSTREAM(MODIFIER||||111|EPHB1|protein_coding|CODING|ENST00000460895||1),DOWNSTREAM(MODIFIER||||148|EPHB1|protein_coding|CODING|ENST00000474732||1),DOWNSTREAM(MODIFIER||||41|EPHB1|protein_coding|CODING|ENST00000497173||1),INTRON(MODIFIER||||984|EPHB1|protein_coding|CODING|ENST00000398015|3|1),INTRON(MODIFIER|||||EPHB1|nonsense_mediated_decay|CODING|ENST00000482618|3|1),INTRON(MODIFIER|||||EPHB1|processed_transcript|CODING|ENST00000488154|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:0:0:0:0,0:40,40:0,0:0,0	79:1:0:0:0,0:73,74:5,5:0,0
3	137021319	rs190426436	T	C	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=137021319;GMAF=0.0005;dbSNPBuildID=135;SSR=0;SAO=0;VP=050000000005000014000100;WGT=1;VC=SNV;ASP;KGPhase1;KGPROD	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:0:0:0:0,0:0,0:0,0:33,33	77:0:0:0:0,0:7,7:0,0:70,70
3	137714136	.	C	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER||||261|CLDN18|protein_coding|CODING|ENST00000343735||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:0:0:0:0,0:31,31:0,0:0,0	81:0:0:0:0,0:77,77:0,0:4,4
3	138131793	rs149489759	G	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=138131793;GMAF=0.0041;dbSNPBuildID=134;SSR=0;SAO=0;VP=050000000005000014000100;WGT=1;VC=SNV;ASP;KGPhase1;KGPROD	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:0:0:0:0,0:0,0:30,30:0,0	72:0:0:0:8,8:0,0:64,64:0,0
3	138900898	.	T	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||360|MRPS22|protein_coding|CODING|ENST00000495075|2|1),INTRON(MODIFIER||||50|MRPS22|protein_coding|CODING|ENST00000495225|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:0:0:0:0,0:0,0:0,0:32,32	83:0:0:0:4,4:0,0:0,0:79,79
3	140504128	.	T	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	28:1:0:0:0,0:0,0:0,1:27,27	60:1:0:0:0,0:5,5:0,0:54,55
3	141778179	.	G	C	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||26|TFDP2|protein_coding|CODING|ENST00000494358|2|1),INTRON(MODIFIER||||370|TFDP2|protein_coding|CODING|ENST00000317104|3|1),INTRON(MODIFIER||||386|TFDP2|protein_coding|CODING|ENST00000467072|3|1),INTRON(MODIFIER||||386|TFDP2|protein_coding|CODING|ENST00000499676|3|1),INTRON(MODIFIER||||446|TFDP2|protein_coding|CODING|ENST00000489671|3|1),INTRON(MODIFIER||||45|TFDP2|protein_coding|CODING|ENST00000475734|1|1),INTRON(MODIFIER||||84|TFDP2|protein_coding|CODING|ENST00000467634|3|1),INTRON(MODIFIER||||88|TFDP2|protein_coding|CODING|ENST00000488107|1|1),INTRON(MODIFIER|||||TFDP2|nonsense_mediated_decay|CODING|ENST00000487734|2|1),INTRON(MODIFIER|||||TFDP2|processed_transcript|CODING|ENST00000464782|1|1),INTRON(MODIFIER|||||TFDP2|processed_transcript|CODING|ENST00000476617|3|1),INTRON(MODIFIER|||||TFDP2|processed_transcript|CODING|ENST00000495095|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:0:0:0:0,0:0,0:35,35:0,0	72:0:0:0:0,0:8,8:64,64:0,0
3	143577302	.	G	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||RP11-8J23.1|processed_pseudogene|NON_CODING|ENST00000392125||1),UPSTREAM(MODIFIER|||||RP11-8J23.1|processed_pseudogene|NON_CODING|ENST00000477300||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:0:0:0:0,0:0,0:35,35:0,0	96:1:0:0:0,0:0,0:89,90:6,6
3	145070257	.	C	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	26:0:0:0:0,0:26,26:0,0:0,0	65:0:0:0:7,7:58,59:0,0:0,0
3	145504962	.	T	G	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:0:0:0:0,0:0,0:0,0:39,40	69:0:0:0:0,0:0,0:7,7:62,62
3	148284807	.	A	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	21:1:0:0:20,22:0,0:0,0:0,0	35:0:0:0:29,41:0,0:0,0:6,9
3	152017593	.	A	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=EXON(MODIFIER|||||MBNL1|processed_transcript|CODING|ENST00000461436|2|1),EXON(MODIFIER|||||MBNL1|processed_transcript|CODING|ENST00000466565|2|1),EXON(MODIFIER|||||MBNL1|processed_transcript|CODING|ENST00000477171|3|1),INTRON(MODIFIER||||154|MBNL1|protein_coding|CODING|ENST00000460591|1|1),INTRON(MODIFIER||||343|MBNL1|protein_coding|CODING|ENST00000493459|1|1),INTRON(MODIFIER||||57|MBNL1|protein_coding|CODING|ENST00000459747|1|1),INTRON(MODIFIER||||89|MBNL1|protein_coding|CODING|ENST00000495875|1|1),UPSTREAM(MODIFIER||||314|MBNL1|protein_coding|CODING|ENST00000465907||1),UPSTREAM(MODIFIER||||340|MBNL1|protein_coding|CODING|ENST00000485509||1),UPSTREAM(MODIFIER||||342|MBNL1|protein_coding|CODING|ENST00000492948||1),UTR_5_PRIME(MODIFIER||||302|MBNL1|protein_coding|CODING|ENST00000282488|2|1),UTR_5_PRIME(MODIFIER||||302|MBNL1|protein_coding|CODING|ENST00000485910|1|1),UTR_5_PRIME(MODIFIER||||314|MBNL1|protein_coding|CODING|ENST00000545754|1|1),UTR_5_PRIME(MODIFIER||||340|MBNL1|protein_coding|CODING|ENST00000324196|1|1),UTR_5_PRIME(MODIFIER||||342|MBNL1|protein_coding|CODING|ENST00000357472|1|1),UTR_5_PRIME(MODIFIER||||348|MBNL1|protein_coding|CODING|ENST00000498502|1|1),UTR_5_PRIME(MODIFIER||||370|MBNL1|protein_coding|CODING|ENST00000355460|2|1),UTR_5_PRIME(MODIFIER||||382|MBNL1|protein_coding|CODING|ENST00000324210|2|1),UTR_5_PRIME(MODIFIER||||388|MBNL1|protein_coding|CODING|ENST00000282486|2|1),UTR_5_PRIME(MODIFIER||||388|MBNL1|protein_coding|CODING|ENST00000463374|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:0:0:0:30,30:0,0:0,0:0,0	78:0:0:0:72,74:6,6:0,0:0,0
3	154526348	rs78456495	C	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=154526348;dbSNPBuildID=131;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	28:1:0:0:0,0:27,28:0,0:0,0	68:0:0:0:0,0:57,59:0,0:11,11
3	154733291	.	A	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:1:0:0:31,31:0,0:0,0:0,0	69:1:0:0:63,66:5,5:0,0:0,0
3	154733292	.	C	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:0:0:0:0,0:31,31:0,0:0,0	69:1:0:0:0,0:61,64:0,0:7,7
3	156309475	.	G	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	28:2:0:0:0,0:0,0:26,28:0,0	84:2:0:0:0,0:0,0:73,73:9,12
3	157566561	.	C	A	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:0:0:0:0,0:34,38:0,0:0,0	63:1:0:0:5,5:57,59:0,0:0,0
3	157566569	.	T	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:1:0:0:0,0:0,0:0,0:31,36	64:1:0:0:0,0:5,5:0,0:58,60
3	157946949	.	A	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||193|RSRC1|protein_coding|CODING|ENST00000476899|4|1),INTRON(MODIFIER||||202|RSRC1|protein_coding|CODING|ENST00000471994|4|1),INTRON(MODIFIER||||276|RSRC1|protein_coding|CODING|ENST00000312179|3|1),INTRON(MODIFIER||||276|RSRC1|protein_coding|CODING|ENST00000464171|3|1),INTRON(MODIFIER||||283|RSRC1|protein_coding|CODING|ENST00000475278|4|1),INTRON(MODIFIER||||334|RSRC1|protein_coding|CODING|ENST00000295930|4|1),INTRON(MODIFIER||||334|RSRC1|protein_coding|CODING|ENST00000480820|4|1),INTRON(MODIFIER|||||RSRC1|nonsense_mediated_decay|CODING|ENST00000480119|5|1),INTRON(MODIFIER|||||RSRC1|processed_transcript|CODING|ENST00000471911|3|1),INTRON(MODIFIER|||||RSRC1|processed_transcript|CODING|ENST00000496268|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:1:0:0:31,32:0,0:0,0:0,0	116:3:0:0:108,110:0,0:5,8:0,0
3	164138181	.	G	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:0:0:0:0,0:0,0:36,38:0,0	61:3:0:0:0,0:0,0:51,52:7,9
3	165713110	.	C	T	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	43:0:0:0:0,0:43,43:0,0:0,0	72:1:0:0:0,0:66,67:0,0:5,5
3	168376792	.	C	G	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||EGFEM1P|processed_transcript|NON_CODING|ENST00000506760|2|1),INTRON(MODIFIER|||||EGFEM1P|unitary_pseudogene|NON_CODING|ENST00000431685|5|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:0:0:0:0,0:38,38:0,0:0,0	95:1:0:0:0,1:88,88:6,6:0,0
3	169939317	.	A	G	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER||||596|PRKCI|protein_coding|CODING|ENST00000295797||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:0:0:0:33,33:0,0:0,0:0,0	71:2:0:0:64,66:0,1:5,5:0,0
3	170227427	.	C	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||165|CLDN11|protein_coding|CODING|ENST00000451576|2|1),INTRON(MODIFIER||||165|CLDN11|protein_coding|CODING|ENST00000486975|2|1),INTRON(MODIFIER||||771|SLC7A14|protein_coding|CODING|ENST00000231706|2|1),INTRON(MODIFIER|||||CLDN11|processed_transcript|CODING|ENST00000480067|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:3:0:0:0,0:34,37:0,0:0,0	60:1:0:0:0,0:53,54:0,0:6,7
3	170352002	.	C	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||165|CLDN11|protein_coding|CODING|ENST00000451576|2|1),INTRON(MODIFIER||||165|CLDN11|protein_coding|CODING|ENST00000486975|2|1),INTRON(MODIFIER|||||CLDN11|processed_transcript|CODING|ENST00000480067|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:1:0:0:0,0:31,33:0,0:0,0	65:0:0:0:1,1:57,57:0,0:7,7
3	171497749	rs185189940	A	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1036|PLD1|protein_coding|CODING|ENST00000356327|1|1),INTRON(MODIFIER||||1074|PLD1|protein_coding|CODING|ENST00000351298|1|1),INTRON(MODIFIER||||597|PLD1|protein_coding|CODING|ENST00000342215|1|1),INTRON(MODIFIER||||971|PLD1|protein_coding|CODING|ENST00000340989|1|1),INTRON(MODIFIER|||||PLD1|nonsense_mediated_decay|CODING|ENST00000440204|1|1),INTRON(MODIFIER|||||PLD1|retained_intron|CODING|ENST00000498278|1|1);RSPOS=171497749;GMAF=0.0018;dbSNPBuildID=135;SSR=0;SAO=0;VP=050000080005000014000100;GENEINFO=PLD1:5337;WGT=1;VC=SNV;INT;ASP;KGPhase1;KGPROD	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:1:0:0:32,33:1,1:0,0:0,0	86:5:0:0:76,78:0,0:0,2:5,6
3	173574570	.	T	G	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||366|NLGN1|protein_coding|CODING|ENST00000415045|5|1),INTRON(MODIFIER||||823|NLGN1|protein_coding|CODING|ENST00000361589|3|1),INTRON(MODIFIER||||823|NLGN1|protein_coding|CODING|ENST00000457714|4|1),INTRON(MODIFIER||||823|NLGN1|protein_coding|CODING|ENST00000545397|2|1),INTRON(MODIFIER||||863|NLGN1|protein_coding|CODING|ENST00000401917|4|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:1:0:0:0,0:0,0:0,0:33,34	68:1:0:0:0,0:0,0:6,6:61,62
3	174127040	.	T	G	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:1:0:0:0,0:0,0:0,0:37,38	80:0:0:0:0,0:0,0:4,4:76,76
3	174782304	.	T	C	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||114|NAALADL2|protein_coding|CODING|ENST00000434257|3|1),INTRON(MODIFIER||||795|NAALADL2|protein_coding|CODING|ENST00000454872|1|1),INTRON(MODIFIER|||||NAALADL2|processed_transcript|CODING|ENST00000473253|1|1),INTRON(MODIFIER|||||NAALADL2|retained_intron|CODING|ENST00000485853|1|1),UPSTREAM(MODIFIER|||||RP11-432A8.2|processed_pseudogene|NON_CODING|ENST00000414101||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	41:1:0:0:0,0:0,0:1,2:39,39	76:1:0:0:0,0:9,9:0,0:66,67
3	175431232	.	A	G	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||UBE2V1P2|processed_pseudogene|NON_CODING|ENST00000397758||1),INTRON(MODIFIER||||795|NAALADL2|protein_coding|CODING|ENST00000454872|11|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	44:1:0:0:43,44:0,0:0,0:0,0	62:0:0:0:57,57:0,0:5,5:0,0
3	175432696	.	A	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||UBE2V1P2|processed_pseudogene|NON_CODING|ENST00000397758||1),INTRON(MODIFIER||||795|NAALADL2|protein_coding|CODING|ENST00000454872|11|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:0:0:0:30,30:0,0:0,0:0,0	93:1:0:0:87,89:5,5:0,0:0,0
3	175503955	.	C	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||795|NAALADL2|protein_coding|CODING|ENST00000454872|13|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:1:0:0:0,0:29,32:1,1:0,0	61:0:0:0:0,0:56,61:0,0:5,5
3	175518841	.	G	C	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||795|NAALADL2|protein_coding|CODING|ENST00000454872|13|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:0:0:0:0,0:0,0:33,33:0,0	58:1:0:0:0,0:5,5:52,54:0,0
3	175522322	.	T	G	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=UTR_3_PRIME(MODIFIER||||795|NAALADL2|protein_coding|CODING|ENST00000454872|14|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:2:0:0:0,0:0,0:0,0:30,32	70:0:0:0:0,0:0,0:8,8:62,63
3	179052984	.	A	G	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||129|ZNF639|protein_coding|CODING|ENST00000494234||1),DOWNSTREAM(MODIFIER||||136|ZNF639|protein_coding|CODING|ENST00000481587||1),DOWNSTREAM(MODIFIER||||215|ZNF639|protein_coding|CODING|ENST00000491818||1),DOWNSTREAM(MODIFIER||||287|ZNF639|protein_coding|CODING|ENST00000466264||1),DOWNSTREAM(MODIFIER||||485|ZNF639|protein_coding|CODING|ENST00000484866||1),DOWNSTREAM(MODIFIER||||485|ZNF639|protein_coding|CODING|ENST00000496856||1),DOWNSTREAM(MODIFIER|||||ZNF639|processed_transcript|CODING|ENST00000466663||1),DOWNSTREAM(MODIFIER|||||ZNF639|retained_intron|CODING|ENST00000483460||1),UTR_3_PRIME(MODIFIER||||485|ZNF639|protein_coding|CODING|ENST00000326361|7|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:0:0:0:37,37:0,0:0,0:0,0	73:1:0:0:64,65:0,0:8,8:0,0
3	179330285	.	A	T	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||snoU13|snoRNA|NON_CODING|ENST00000459278||1),INTRON(MODIFIER||||137|NDUFB5|protein_coding|CODING|ENST00000493866|1|1),INTRON(MODIFIER||||177|NDUFB5|protein_coding|CODING|ENST00000472629|2|1),INTRON(MODIFIER||||189|NDUFB5|protein_coding|CODING|ENST00000259037|1|1),INTRON(MODIFIER|||||NDUFB5|nonsense_mediated_decay|CODING|ENST00000359944|1|1),INTRON(MODIFIER|||||NDUFB5|nonsense_mediated_decay|CODING|ENST00000468210|1|1),INTRON(MODIFIER|||||NDUFB5|nonsense_mediated_decay|CODING|ENST00000480374|1|1),INTRON(MODIFIER|||||NDUFB5|processed_transcript|CODING|ENST00000473500|2|1),INTRON(MODIFIER|||||NDUFB5|processed_transcript|CODING|ENST00000496904|1|1),INTRON(MODIFIER|||||NDUFB5|retained_intron|CODING|ENST00000477177|1|1),INTRON(MODIFIER|||||NDUFB5|retained_intron|CODING|ENST00000488002|1|1),UPSTREAM(MODIFIER||||56|NDUFB5|protein_coding|CODING|ENST00000471112||1),UPSTREAM(MODIFIER|||||NDUFB5|retained_intron|CODING|ENST00000476587||1),UPSTREAM(MODIFIER|||||NDUFB5|retained_intron|CODING|ENST00000491054||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:2:0:0:26,28:1,1:0,0:0,0	40:4:0:0:27,29:0,0:0,0:9,10
3	179878801	.	G	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||RNA5SP149|rRNA|NON_CODING|ENST00000364952||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:0:0:0:0,0:0,0:35,35:0,0	70:0:0:0:0,0:0,0:64,64:6,6
3	180369712	.	C	G	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||755|CCDC39|protein_coding|CODING|ENST00000273654|14|1),INTRON(MODIFIER||||941|CCDC39|protein_coding|CODING|ENST00000442201|8|1),INTRON(MODIFIER|||||CCDC39|nonsense_mediated_decay|CODING|ENST00000476379|14|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:1:0:0:0,0:36,37:0,0:0,0	73:0:0:0:0,0:67,68:6,6:0,0
3	181360398	.	C	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||SOX2-OT|processed_transcript|NON_CODING|ENST00000460739|4|1),INTRON(MODIFIER|||||SOX2-OT|processed_transcript|NON_CODING|ENST00000469278|4|1),INTRON(MODIFIER|||||SOX2-OT|processed_transcript|NON_CODING|ENST00000472856|1|1),INTRON(MODIFIER|||||SOX2-OT|processed_transcript|NON_CODING|ENST00000476125|2|1),INTRON(MODIFIER|||||SOX2-OT|processed_transcript|NON_CODING|ENST00000476964|2|1),INTRON(MODIFIER|||||SOX2-OT|processed_transcript|NON_CODING|ENST00000485035|2|1),INTRON(MODIFIER|||||SOX2-OT|processed_transcript|NON_CODING|ENST00000491282|2|1),INTRON(MODIFIER|||||SOX2-OT|processed_transcript|NON_CODING|ENST00000492337|2|1),INTRON(MODIFIER|||||SOX2-OT|processed_transcript|NON_CODING|ENST00000493521|5|1),INTRON(MODIFIER|||||SOX2-OT|processed_transcript|NON_CODING|ENST00000498226|2|1),INTRON(MODIFIER|||||SOX2-OT|processed_transcript|NON_CODING|ENST00000498731|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:0:0:0:0,0:30,30:0,0:0,0	69:1:0:0:0,0:63,63:0,0:5,6
3	181836561	.	C	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||RP11-416O18.2|lincRNA|NON_CODING|ENST00000462382||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	28:0:0:0:0,0:28,28:0,0:0,0	70:4:0:0:0,0:62,66:4,4:0,0
3	181882544	.	C	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:0:0:0:0,0:29,29:0,0:0,0	80:0:0:0:0,0:72,72:0,0:8,8
3	182135036	.	C	A	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:0:0:0:0,0:38,38:0,0:0,0	81:0:0:0:5,5:76,76:0,0:0,0
3	183825443	.	T	A	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||157|HTR3E|protein_coding|CODING|ENST00000431041||1),DOWNSTREAM(MODIFIER||||441|HTR3E|protein_coding|CODING|ENST00000425359||1),DOWNSTREAM(MODIFIER||||456|HTR3E|protein_coding|CODING|ENST00000415389||1),DOWNSTREAM(MODIFIER||||456|HTR3E|protein_coding|CODING|ENST00000436361||1),DOWNSTREAM(MODIFIER||||471|HTR3E|protein_coding|CODING|ENST00000335304||1),DOWNSTREAM(MODIFIER||||482|HTR3E|protein_coding|CODING|ENST00000440596||1),INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||HTR3E-AS1|antisense|NON_CODING|ENST00000431427||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:0:0:0:0,0:0,0:0,0:34,34	71:2:0:0:6,7:1,1:0,0:62,65
3	184140016	.	C	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||204|RP11-433C9.2|protein_coding|CODING|ENST00000419960|1|1),INTRON(MODIFIER||||705|EIF2B5|protein_coding|CODING|ENST00000444495|15|1),INTRON(MODIFIER|||||RP11-433C9.2|processed_transcript|CODING|ENST00000478780|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	28:1:0:0:0,0:27,28:0,0:0,0	80:1:0:0:0,0:73,74:0,0:6,6
3	184220435	rs201346830	A	G	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||705|EIF2B5|protein_coding|CODING|ENST00000444495|15|1),UPSTREAM(MODIFIER|||||EIF2B5-IT1|sense_intronic|NON_CODING|ENST00000451348||1);RSPOS=184220435;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	42:1:0:0:41,51:0,0:0,0:0,0	94:4:0:0:83,110:0,0:7,12:0,0
3	184388717	.	A	G	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||705|EIF2B5|protein_coding|CODING|ENST00000444495|15|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	21:4:0:0:17,21:0,0:0,0:0,0	51:7:0:0:34,38:0,0:10,16:0,0
3	185257028	.	T	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||417|LIPH|protein_coding|CODING|ENST00000424591|1|1),INTRON(MODIFIER||||451|LIPH|protein_coding|CODING|ENST00000296252|1|1),INTRON(MODIFIER|||||LIPH|nonsense_mediated_decay|CODING|ENST00000429510|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:0:0:0:0,0:0,0:0,0:30,31	71:0:0:0:0,0:5,5:0,0:66,67
3	185282860	.	C	T	.	PASS	NT=ref;QSS=27;QSS_NT=27;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	49:1:0:0:0,0:48,50:0,0:0,0	69:1:0:0:0,1:58,59:0,0:10,11
3	185631591	.	T	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||188|TRA2B|protein_coding|CODING|ENST00000382191||1),DOWNSTREAM(MODIFIER||||288|TRA2B|protein_coding|CODING|ENST00000453386||1),DOWNSTREAM(MODIFIER|||||TRA2B|nonsense_mediated_decay|CODING|ENST00000456380||1),DOWNSTREAM(MODIFIER|||||TRA2B|retained_intron|CODING|ENST00000463328||1),DOWNSTREAM(MODIFIER|||||TRA2B|retained_intron|CODING|ENST00000466832||1),DOWNSTREAM(MODIFIER|||||TRA2B|retained_intron|CODING|ENST00000487615||1),DOWNSTREAM(MODIFIER|||||TRA2B|retained_intron|CODING|ENST00000492417||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:1:0:0:0,0:0,0:0,0:29,30	71:0:0:0:0,0:5,5:0,0:66,66
3	185967640	.	A	G	.	PASS	NT=ref;QSS=26;QSS_NT=26;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||732|DGKG|protein_coding|CODING|ENST00000544847|17|1),INTRON(MODIFIER||||752|DGKG|protein_coding|CODING|ENST00000382164|18|1),INTRON(MODIFIER||||766|DGKG|protein_coding|CODING|ENST00000344484|18|1),INTRON(MODIFIER||||791|DGKG|protein_coding|CODING|ENST00000265022|19|1),INTRON(MODIFIER|||||DGKG|retained_intron|CODING|ENST00000480809|18|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	52:2:0:0:50,52:0,0:0,0:0,0	89:1:0:0:76,77:1,1:11,11:0,0
3	185980735	.	A	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||153|DGKG|protein_coding|CODING|ENST00000437018||1),DOWNSTREAM(MODIFIER|||||DGKG|retained_intron|CODING|ENST00000472506||1),INTRON(MODIFIER||||732|DGKG|protein_coding|CODING|ENST00000544847|12|1),INTRON(MODIFIER||||752|DGKG|protein_coding|CODING|ENST00000382164|13|1),INTRON(MODIFIER||||766|DGKG|protein_coding|CODING|ENST00000344484|14|1),INTRON(MODIFIER||||791|DGKG|protein_coding|CODING|ENST00000265022|14|1),INTRON(MODIFIER|||||DGKG|retained_intron|CODING|ENST00000480809|13|1),UPSTREAM(MODIFIER|||||DGKG|retained_intron|CODING|ENST00000480933||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:1:0:0:28,29:0,0:0,0:0,0	77:1:0:0:69,70:0,1:7,7:0,0
3	186081502	.	G	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER||||732|DGKG|protein_coding|CODING|ENST00000544847||1),UPSTREAM(MODIFIER||||752|DGKG|protein_coding|CODING|ENST00000382164||1),UPSTREAM(MODIFIER||||766|DGKG|protein_coding|CODING|ENST00000344484||1),UPSTREAM(MODIFIER||||791|DGKG|protein_coding|CODING|ENST00000265022||1),UPSTREAM(MODIFIER|||||DGKG|retained_intron|CODING|ENST00000480809||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:0:0:0:0,0:0,0:32,32:1,1	85:0:0:0:6,6:0,0:77,77:2,2
3	187886199	.	C	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||150|LPP|protein_coding|CODING|ENST00000416784|1|1),INTRON(MODIFIER||||428|LPP|protein_coding|CODING|ENST00000448637|1|1),INTRON(MODIFIER||||51|LPP|protein_coding|CODING|ENST00000430340|1|1),INTRON(MODIFIER||||64|LPP|protein_coding|CODING|ENST00000454789|1|1),INTRON(MODIFIER||||92|LPP|protein_coding|CODING|ENST00000414139|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:1:0:0:0,0:35,36:0,0:0,0	67:0:0:0:0,0:61,61:0,0:6,6
3	188081017	.	T	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||110|LPP|protein_coding|CODING|ENST00000420410|1|1),INTRON(MODIFIER||||150|LPP|protein_coding|CODING|ENST00000416784|1|1),INTRON(MODIFIER||||428|LPP|protein_coding|CODING|ENST00000448637|2|1),INTRON(MODIFIER||||45|LPP|protein_coding|CODING|ENST00000443217|2|1),INTRON(MODIFIER||||51|LPP|protein_coding|CODING|ENST00000430340|3|1),INTRON(MODIFIER||||56|LPP|protein_coding|CODING|ENST00000457242|1|1),INTRON(MODIFIER||||612|LPP|protein_coding|CODING|ENST00000312675|2|1),INTRON(MODIFIER||||612|LPP|protein_coding|CODING|ENST00000543006|2|1),INTRON(MODIFIER||||64|LPP|protein_coding|CODING|ENST00000454789|2|1),INTRON(MODIFIER||||65|LPP|protein_coding|CODING|ENST00000426274|2|1),INTRON(MODIFIER||||92|LPP|protein_coding|CODING|ENST00000414139|2|1),INTRON(MODIFIER|||||LPP|processed_transcript|CODING|ENST00000494233|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	28:0:0:0:0,0:0,0:0,0:28,28	77:1:0:0:0,0:4,4:0,0:72,74
3	189515775	.	C	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||182|TP63|protein_coding|CODING|ENST00000434928|1|1),INTRON(MODIFIER||||393|TP63|protein_coding|CODING|ENST00000437221|1|1),INTRON(MODIFIER||||416|TP63|protein_coding|CODING|ENST00000392461|1|1),INTRON(MODIFIER||||461|TP63|protein_coding|CODING|ENST00000392463|1|1),INTRON(MODIFIER||||487|TP63|protein_coding|CODING|ENST00000418709|3|1),INTRON(MODIFIER||||501|TP63|protein_coding|CODING|ENST00000449992|1|1),INTRON(MODIFIER||||510|TP63|protein_coding|CODING|ENST00000320472|3|1),INTRON(MODIFIER||||555|TP63|protein_coding|CODING|ENST00000392460|3|1),INTRON(MODIFIER||||582|TP63|protein_coding|CODING|ENST00000456148|1|1),INTRON(MODIFIER||||586|TP63|protein_coding|CODING|ENST00000354600|1|1),INTRON(MODIFIER||||595|TP63|protein_coding|CODING|ENST00000382063|3|1),INTRON(MODIFIER||||676|TP63|protein_coding|CODING|ENST00000440651|3|1),INTRON(MODIFIER||||680|TP63|protein_coding|CODING|ENST00000264731|3|1),INTRON(MODIFIER|||||TP63|retained_intron|CODING|ENST00000460036|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:0:0:0:0,0:29,29:0,0:0,0	74:0:0:0:0,0:70,70:0,0:4,5
3	191838870	.	A	C	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:0:0:0:37,38:0,0:0,0:0,0	65:1:0:0:58,59:6,6:0,0:0,0
3	191973994	.	C	A	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||106|FGF12|protein_coding|CODING|ENST00000418610|3|1),INTRON(MODIFIER||||138|FGF12|protein_coding|CODING|ENST00000440901|1|1),INTRON(MODIFIER||||140|FGF12|protein_coding|CODING|ENST00000448795|3|1),INTRON(MODIFIER||||144|FGF12|protein_coding|CODING|ENST00000430714|3|1),INTRON(MODIFIER||||181|FGF12|protein_coding|CODING|ENST00000264730|3|1),INTRON(MODIFIER||||181|FGF12|protein_coding|CODING|ENST00000445105|4|1),INTRON(MODIFIER||||181|FGF12|protein_coding|CODING|ENST00000450716|4|1),INTRON(MODIFIER||||243|FGF12|protein_coding|CODING|ENST00000454309|3|1),INTRON(MODIFIER|||||FGF12-AS1|antisense|NON_CODING|ENST00000414920|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:0:0:0:0,0:35,35:0,0:0,0	80:1:0:0:6,6:73,74:0,0:0,0
3	192951576	.	C	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:0:0:0:0,0:30,30:0,0:0,0	86:0:0:0:0,0:81,81:0,0:5,5
3	194567359	.	T	C	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:4:0:0:0,0:0,0:2,2:34,38	64:3:0:0:0,0:7,8:1,1:53,57
3	195213110	.	G	T	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:2:0:0:0,0:0,0:37,65:0,1	108:4:0:0:0,0:0,0:95,144:9,10
3	195213111	.	G	T	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:2:0:0:0,1:0,0:38,65:0,1	108:4:0:0:0,1:0,0:95,143:9,10
3	195213758	.	G	C	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	53:3:0:0:0,1:1,1:48,71:1,1	142:5:0:0:0,0:6,8:131,174:0,0
3	195214160	.	G	T	.	PASS	NT=ref;QSS=27;QSS_NT=27;SGT=GG->GT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	67:3:0:0:0,0:0,0:64,87:0,2	149:2:0:0:0,0:0,0:138,185:9,14
3	195221530	.	G	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->CG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	57:2:0:0:0,0:1,3:54,70:0,0	112:6:0:0:0,0:7,16:99,139:0,0
3	195222096	.	C	T	.	PASS	NT=ref;QSS=24;QSS_NT=24;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	50:3:0:0:0,0:47,82:0,0:0,2	149:6:0:0:0,0:131,208:0,0:12,14
3	195227706	.	A	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:1:0:0:39,50:0,0:0,0:0,0	74:3:0:0:65,88:1,1:5,7:0,0
3	195229236	.	G	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->CG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:2:0:0:0,0:0,0:29,46:0,0	50:0:0:0:0,0:8,8:42,68:0,0
3	195231381	.	G	C	.	PASS	NT=ref;QSS=24;QSS_NT=24;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	78:3:0:0:0,0:0,0:75,108:0,0	230:15:0:0:1,1:8,13:206,316:0,0
3	195231801	.	G	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	52:5:0:0:0,2:0,0:47,71:0,1	134:5:0:0:8,17:0,0:121,180:0,1
3	195362524	.	C	G	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||520|MUC20|protein_coding|CODING|ENST00000381954|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	23:0:0:0:0,0:23,26:0,0:0,0	47:0:0:0:0,0:38,42:9,10:0,0
3	195510059	rs202157220	T	C	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=EXON(MODIFIER|||||MUC4|nonsense_mediated_decay|CODING|ENST00000462323|2|1),EXON(MODIFIER|||||MUC4|nonsense_mediated_decay|CODING|ENST00000466475|2|1),EXON(MODIFIER|||||MUC4|nonsense_mediated_decay|CODING|ENST00000470451|2|1),EXON(MODIFIER|||||MUC4|nonsense_mediated_decay|CODING|ENST00000477086|2|1),EXON(MODIFIER|||||MUC4|nonsense_mediated_decay|CODING|ENST00000477756|2|1),EXON(MODIFIER|||||MUC4|nonsense_mediated_decay|CODING|ENST00000478156|2|1),EXON(MODIFIER|||||MUC4|nonsense_mediated_decay|CODING|ENST00000479406|2|1),EXON(MODIFIER|||||MUC4|nonsense_mediated_decay|CODING|ENST00000480843|2|1),INTRON(MODIFIER||||1125|MUC4|protein_coding|CODING|ENST00000349607|1|1),INTRON(MODIFIER||||1176|MUC4|protein_coding|CODING|ENST00000346145|1|1),NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|Acc/Gcc|T2798A|5360|MUC4|protein_coding|CODING|ENST00000475231|2|1),NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|Acc/Gcc|T2798A|5412|MUC4|protein_coding|CODING|ENST00000463781|2|1);RSPOS=195510059;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000080805000002000100;WGT=1;VC=SNV;NSM;INT;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	56:3:0:0:0,1:1,2:1,1:51,64	99:10:0:0:0,0:9,18:3,4:77,108
3	195602365	.	A	G	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=AA->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=DOWNSTREAM(MODIFIER|||||TNK2|nonsense_mediated_decay|CODING|ENST00000430929||1),DOWNSTREAM(MODIFIER|||||TNK2|processed_transcript|CODING|ENST00000468819||1),INTRON(MODIFIER||||1038|TNK2|protein_coding|CODING|ENST00000333602|9|1),INTRON(MODIFIER||||1038|TNK2|protein_coding|CODING|ENST00000392400|9|1),INTRON(MODIFIER||||1040|TNK2|protein_coding|CODING|ENST00000428187|9|1),INTRON(MODIFIER||||1086|TNK2|protein_coding|CODING|ENST00000381916|9|1),INTRON(MODIFIER||||199|TNK2|protein_coding|CODING|ENST00000411741|2|1),INTRON(MODIFIER||||528|TNK2|protein_coding|CODING|ENST00000316664|9|1),INTRON(MODIFIER|||||TNK2|nonsense_mediated_decay|CODING|ENST00000439230|9|1),INTRON(MODIFIER|||||TNK2|processed_transcript|CODING|ENST00000478623|1|1),INTRON(MODIFIER|||||TNK2|processed_transcript|CODING|ENST00000486523|1|1),INTRON(MODIFIER|||||TNK2|retained_intron|CODING|ENST00000464041|8|1),INTRON(MODIFIER|||||TNK2|retained_intron|CODING|ENST00000481865|5|1),INTRON(MODIFIER|||||TNK2|retained_intron|CODING|ENST00000489628|3|1),UPSTREAM(MODIFIER||||607|TNK2|protein_coding|CODING|ENST00000416152||1),UPSTREAM(MODIFIER|||||TNK2|retained_intron|CODING|ENST00000468680||1),UPSTREAM(MODIFIER|||||TNK2|retained_intron|CODING|ENST00000478715||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	45:0:0:0:45,45:0,0:0,1:0,0	88:2:0:0:75,82:2,2:9,9:0,0
3	195670456	.	C	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=DOWNSTREAM(MODIFIER|||||AC024937.6|processed_pseudogene|NON_CODING|ENST00000429866||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:0:0:0:0,0:34,37:0,0:0,0	68:3:0:0:0,0:59,65:0,0:6,6
3	195727361	.	G	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||AC024937.4|processed_pseudogene|NON_CODING|ENST00000411669||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:1:0:0:0,0:1,1:32,36:0,0	49:0:0:0:5,7:0,0:44,48:0,0
3	195730791	.	A	G	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	41:2:0:0:39,41:0,0:0,0:0,0	77:1:0:0:71,72:0,0:5,5:0,0
3	195814868	rs13097559	T	A	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=195814868;dbSNPBuildID=121;SSR=0;SAO=0;VP=050000000001000002000100;WGT=1;VC=SNV;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:1:0:0:0,0:0,0:0,0:37,39	91:1:0:0:7,7:0,0:2,3:81,83
3	195838659	.	C	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:1:0:0:0,0:28,29:0,0:0,0	80:0:0:0:0,0:76,83:4,4:0,0
3	195838670	.	A	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:2:0:0:28,30:0,0:0,0:0,0	81:0:0:0:75,82:0,0:6,6:0,0
3	195899682	.	C	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:0:0:0:0,0:33,34:0,0:0,0	75:1:0:0:0,0:68,70:1,1:5,5
3	197363064	.	T	A	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||RP11-496H1.1|processed_pseudogene|NON_CODING|ENST00000507981||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:0:0:0:0,0:0,0:0,0:34,34	68:0:0:0:6,7:0,0:0,0:62,64
3	197454858	rs11916116	C	T	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||435|KIAA0226|protein_coding|CODING|ENST00000449205|1|1),INTRON(MODIFIER||||921|KIAA0226|protein_coding|CODING|ENST00000389665|1|1),INTRON(MODIFIER||||927|KIAA0226|protein_coding|CODING|ENST00000273582|1|1),INTRON(MODIFIER||||972|KIAA0226|protein_coding|CODING|ENST00000296343|1|1),INTRON(MODIFIER|||||KIAA0226|processed_transcript|CODING|ENST00000467303|1|1),INTRON(MODIFIER|||||KIAA0226|processed_transcript|CODING|ENST00000474214|1|1);RSPOS=197454858;dbSNPBuildID=120;SSR=0;SAO=0;VP=050000080001000002000100;GENEINFO=KIAA0226:9711;WGT=1;VC=SNV;INT;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	51:0:0:0:0,0:50,50:0,0:1,1	78:0:0:0:0,0:71,71:0,0:7,7
3	197489231	.	A	G	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||175|FYTTD1|protein_coding|CODING|ENST00000428738|2|1),INTRON(MODIFIER||||227|FYTTD1|protein_coding|CODING|ENST00000428395|3|1),INTRON(MODIFIER||||251|FYTTD1|protein_coding|CODING|ENST00000424384|2|1),INTRON(MODIFIER||||292|FYTTD1|protein_coding|CODING|ENST00000415708|3|1),INTRON(MODIFIER||||318|FYTTD1|protein_coding|CODING|ENST00000241502|2|1),INTRON(MODIFIER||||70|FYTTD1|protein_coding|CODING|ENST00000426031|2|1),INTRON(MODIFIER|||||FYTTD1|nonsense_mediated_decay|CODING|ENST00000412924|2|1),INTRON(MODIFIER|||||FYTTD1|nonsense_mediated_decay|CODING|ENST00000418169|2|1),INTRON(MODIFIER|||||FYTTD1|nonsense_mediated_decay|CODING|ENST00000494309|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:0:0:0:40,40:0,0:0,0:0,0	66:1:0:0:55,58:0,0:10,11:0,0
3	197519403	.	T	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||623|LRCH3|protein_coding|CODING|ENST00000441090|1|1),INTRON(MODIFIER||||712|LRCH3|protein_coding|CODING|ENST00000334859|1|1),INTRON(MODIFIER||||725|LRCH3|protein_coding|CODING|ENST00000414675|1|1),INTRON(MODIFIER||||777|LRCH3|protein_coding|CODING|ENST00000425562|1|1),INTRON(MODIFIER||||803|LRCH3|protein_coding|CODING|ENST00000438796|1|1),INTRON(MODIFIER|||||LRCH3|nonsense_mediated_decay|CODING|ENST00000443727|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	19:0:0:0:0,0:0,0:0,0:19,21	51:0:0:0:0,0:9,9:0,0:42,42
3	197596622	rs113607098	G	A	.	PASS	NT=ref;QSS=23;QSS_NT=23;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||LRCH3|retained_intron|CODING|ENST00000481048||1),INTRON(MODIFIER||||214|LRCH3|protein_coding|CODING|ENST00000433298|4|1),INTRON(MODIFIER||||226|LRCH3|protein_coding|CODING|ENST00000452660|5|1),INTRON(MODIFIER||||372|LRCH3|protein_coding|CODING|ENST00000536618|12|1),INTRON(MODIFIER||||623|LRCH3|protein_coding|CODING|ENST00000441090|14|1),INTRON(MODIFIER||||712|LRCH3|protein_coding|CODING|ENST00000334859|17|1),INTRON(MODIFIER||||725|LRCH3|protein_coding|CODING|ENST00000414675|16|1),INTRON(MODIFIER||||777|LRCH3|protein_coding|CODING|ENST00000425562|17|1),INTRON(MODIFIER||||803|LRCH3|protein_coding|CODING|ENST00000438796|17|1),INTRON(MODIFIER|||||LRCH3|retained_intron|CODING|ENST00000461674|6|1),INTRON(MODIFIER|||||LRCH3|retained_intron|CODING|ENST00000471667|2|1),INTRON(MODIFIER|||||LRCH3|retained_intron|CODING|ENST00000473177|1|1),INTRON(MODIFIER|||||LRCH3|retained_intron|CODING|ENST00000483442|3|1),UPSTREAM(MODIFIER|||||LRCH3|retained_intron|CODING|ENST00000466054||1);RSPOS=197596622;dbSNPBuildID=132;SSR=0;SAO=0;VP=050000080001000102000100;GENEINFO=LRCH3:84859;WGT=1;VC=SNV;INT;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	24:0:0:0:0,0:0,0:24,30:0,0	34:3:0:0:7,9:0,0:24,33:0,0
3	197825885	.	A	G	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=AA->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	49:5:0:0:43,64:1,1:0,3:0,0	77:6:0:0:61,96:0,1:10,16:0,0
4	157211	.	C	T	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||ZNF718|lincRNA|NON_CODING|ENST00000400172||1),DOWNSTREAM(MODIFIER|||||ZNF718|lincRNA|NON_CODING|ENST00000502662||1),DOWNSTREAM(MODIFIER|||||ZNF718|lincRNA|NON_CODING|ENST00000511079||1),EXON(MODIFIER|||||ZNF718|lincRNA|NON_CODING|ENST00000510175|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:0:0:0:0,0:36,36:0,0:0,0	57:1:0:0:0,0:52,53:0,0:4,4
4	629375	.	C	T	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||853|PDE6B|protein_coding|CODING|ENST00000255622|2|1),INTRON(MODIFIER||||854|PDE6B|protein_coding|CODING|ENST00000496514|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:0:0:0:0,0:36,37:0,0:0,0	95:2:0:0:0,0:87,97:0,0:6,6
4	725268	.	A	G	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=DOWNSTREAM(MODIFIER|||||PCGF3|retained_intron|CODING|ENST00000475288||1),INTRON(MODIFIER||||108|PCGF3|protein_coding|CODING|ENST00000433814|3|1),INTRON(MODIFIER||||173|PCGF3|protein_coding|CODING|ENST00000400151|3|1),INTRON(MODIFIER||||208|PCGF3|protein_coding|CODING|ENST00000521023|3|1),INTRON(MODIFIER||||242|PCGF3|protein_coding|CODING|ENST00000362003|3|1),INTRON(MODIFIER||||242|PCGF3|protein_coding|CODING|ENST00000470161|3|1),INTRON(MODIFIER||||242|PCGF3|protein_coding|CODING|ENST00000505655|1|1),INTRON(MODIFIER||||39|PCGF3|protein_coding|CODING|ENST00000419774|3|1),INTRON(MODIFIER||||61|PCGF3|protein_coding|CODING|ENST00000427463|3|1),INTRON(MODIFIER|||||PCGF3|nonsense_mediated_decay|CODING|ENST00000430644|3|1),INTRON(MODIFIER|||||PCGF3|nonsense_mediated_decay|CODING|ENST00000440452|3|1),INTRON(MODIFIER|||||PCGF3|processed_transcript|CODING|ENST00000482726|3|1),INTRON(MODIFIER|||||PCGF3|retained_intron|CODING|ENST00000484141|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	41:2:0:0:39,40:0,0:0,1:0,0	69:1:0:0:61,61:0,0:7,8:0,0
4	1096456	.	T	G	.	PASS	NT=ref;QSS=25;QSS_NT=25;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||232|RNF212|protein_coding|CODING|ENST00000382968|2|1),INTRON(MODIFIER||||273|RNF212|protein_coding|CODING|ENST00000333673|2|1),INTRON(MODIFIER||||297|RNF212|protein_coding|CODING|ENST00000433731|2|1),INTRON(MODIFIER|||||RNF212|nonsense_mediated_decay|CODING|ENST00000506730|1|1),INTRON(MODIFIER|||||RNF212|nonsense_mediated_decay|CODING|ENST00000508428|1|1),INTRON(MODIFIER|||||RNF212|nonsense_mediated_decay|CODING|ENST00000510715|2|1),INTRON(MODIFIER|||||RNF212|nonsense_mediated_decay|CODING|ENST00000511620|2|1),INTRON(MODIFIER|||||RNF212|processed_transcript|CODING|ENST00000505730|3|1),INTRON(MODIFIER|||||RNF212|retained_intron|CODING|ENST00000454487|2|1),UPSTREAM(MODIFIER|||||RNF212|retained_intron|CODING|ENST00000512552||1),UPSTREAM(MODIFIER|||||RP11-20I20.1|processed_pseudogene|NON_CODING|ENST00000513176||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	44:0:0:0:0,0:0,0:0,0:44,44	64:1:0:0:0,0:0,0:9,10:54,57
4	1137968	.	T	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||TMED11P|unitary_pseudogene|NON_CODING|ENST00000479478|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:6:0:0:0,0:0,0:1,1:31,37	72:2:0:0:0,0:8,9:1,1:61,63
4	1420214	.	C	G	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:3:0:0:0,1:28,68:0,0:0,1	39:1:0:0:0,1:33,108:5,10:0,0
4	1617085	.	C	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:1:0:0:0,0:35,36:0,0:0,0	69:4:0:0:0,0:60,65:0,0:5,6
4	2299661	.	A	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=AA->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER||||817|ZFYVE28|protein_coding|CODING|ENST00000515312|8|1),INTRON(MODIFIER||||857|ZFYVE28|protein_coding|CODING|ENST00000511071|7|1),INTRON(MODIFIER||||887|ZFYVE28|protein_coding|CODING|ENST00000290974|8|1),INTRON(MODIFIER|||||RP11-478C1.7|antisense|NON_CODING|ENST00000510632|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:3:0:0:34,36:1,1:0,2:0,0	56:4:0:0:42,44:1,1:9,11:0,0
4	2299986	.	A	G	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||817|ZFYVE28|protein_coding|CODING|ENST00000515312|8|1),INTRON(MODIFIER||||857|ZFYVE28|protein_coding|CODING|ENST00000511071|7|1),INTRON(MODIFIER||||887|ZFYVE28|protein_coding|CODING|ENST00000290974|8|1),INTRON(MODIFIER|||||RP11-478C1.7|antisense|NON_CODING|ENST00000510632|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	42:1:0:0:41,42:0,0:0,0:0,0	82:5:0:0:69,71:0,0:8,11:0,0
4	2532544	.	T	C	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:1:0:0:0,0:0,0:1,1:38,40	57:1:0:0:1,1:7,7:0,0:48,49
4	3511606	.	T	C	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||LRPAP1|processed_transcript|CODING|ENST00000296325||1),UTR_3_PRIME(MODIFIER||||357|LRPAP1|protein_coding|CODING|ENST00000500728|8|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	48:0:0:0:0,0:1,1:0,0:47,47	77:1:0:0:0,0:9,9:1,1:66,68
4	3552780	.	G	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:1:0:0:0,0:0,0:30,31:0,0	91:2:0:0:9,12:0,0:80,82:0,0
4	3716158	.	A	G	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	43:4:0:0:38,41:0,1:1,1:0,1	78:3:0:0:61,62:0,0:14,16:0,0
4	3816801	rs80240800	G	A	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=3816801;dbSNPBuildID=131;SSR=0;SAO=0;VP=050000000005000102000100;WGT=1;VC=SNV;ASP;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	92:4:0:0:1,1:1,1:84,97:2,2	169:9:0:0:6,9:2,4:150,171:2,2
4	4201960	rs61130402	C	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||612|OTOP1|protein_coding|CODING|ENST00000296358|4|1);RSPOS=4201960;GMAF=0.4341;dbSNPBuildID=129;SSR=0;SAO=0;VP=050100080005000116000100;GENEINFO=OTOP1:133060;WGT=1;VC=SNV;SLO;INT;ASP;GNO;KGPhase1;KGPROD;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	42:1:0:0:0,0:41,42:0,0:0,0	76:2:0:0:0,0:70,73:0,0:4,5
4	4373002	.	G	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||185|NSG1|protein_coding|CODING|ENST00000421177|1|1),INTRON(MODIFIER||||185|NSG1|protein_coding|CODING|ENST00000513555|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:0:0:0:0,0:0,0:30,30:0,0	98:1:0:0:0,0:0,0:84,85:13,13
4	5708160	rs77615077	G	C	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1228|EVC2|protein_coding|CODING|ENST00000310917|1|1),INTRON(MODIFIER||||1246|EVC2|protein_coding|CODING|ENST00000344938|1|1),INTRON(MODIFIER||||1308|EVC2|protein_coding|CODING|ENST00000344408|1|1),INTRON(MODIFIER|||||EVC2|nonsense_mediated_decay|CODING|ENST00000475313|1|1),INTRON(MODIFIER|||||EVC2|nonsense_mediated_decay|CODING|ENST00000509670|2|1),UPSTREAM(MODIFIER||||535|EVC|protein_coding|CODING|ENST00000509451||1),UPSTREAM(MODIFIER||||992|EVC|protein_coding|CODING|ENST00000264956||1),UPSTREAM(MODIFIER||||992|EVC|protein_coding|CODING|ENST00000382674||1);RSPOS=5708160;dbSNPBuildID=131;SSR=0;SAO=0;VP=050000080005000102000100;GENEINFO=EVC2:132884;WGT=1;VC=SNV;INT;ASP;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:3:10:0:0,0:0,0:31,51:0,0	78:6:35:0:0,0:9,15:63,96:0,0
4	6069573	rs111340860	G	A	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||461|JAKMIP1|protein_coding|CODING|ENST00000410077|7|1),INTRON(MODIFIER||||626|JAKMIP1|protein_coding|CODING|ENST00000282924|8|1),INTRON(MODIFIER||||626|JAKMIP1|protein_coding|CODING|ENST00000409831|8|1),INTRON(MODIFIER||||646|JAKMIP1|protein_coding|CODING|ENST00000409371|6|1),INTRON(MODIFIER||||831|JAKMIP1|protein_coding|CODING|ENST00000409021|8|1),INTRON(MODIFIER|||||JAKMIP1|nonsense_mediated_decay|CODING|ENST00000473053|8|1),INTRON(MODIFIER|||||JAKMIP1|processed_transcript|CODING|ENST00000457227|6|1);RSPOS=6069573;dbSNPBuildID=132;SSR=0;SAO=0;VP=050000080001040102000100;GENEINFO=JAKMIP1:152789;WGT=1;VC=SNV;INT;VLD;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	47:2:0:0:0,0:1,1:44,48:0,0	80:3:0:0:6,7:0,2:71,73:0,0
4	6101158	.	C	T	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||461|JAKMIP1|protein_coding|CODING|ENST00000410077|2|1),INTRON(MODIFIER||||626|JAKMIP1|protein_coding|CODING|ENST00000282924|3|1),INTRON(MODIFIER||||626|JAKMIP1|protein_coding|CODING|ENST00000409831|3|1),INTRON(MODIFIER||||646|JAKMIP1|protein_coding|CODING|ENST00000409371|2|1),INTRON(MODIFIER||||831|JAKMIP1|protein_coding|CODING|ENST00000409021|3|1),INTRON(MODIFIER|||||JAKMIP1|nonsense_mediated_decay|CODING|ENST00000473053|3|1),INTRON(MODIFIER|||||JAKMIP1|processed_transcript|CODING|ENST00000457227|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:1:0:0:1,1:38,39:0,0:0,0	73:0:0:0:0,0:67,67:0,0:6,6
4	6893752	.	T	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:0:0:0:0,0:0,0:0,0:32,32	80:3:0:0:0,0:7,7:0,1:70,72
4	7205150	.	C	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1159|SORCS2|protein_coding|CODING|ENST00000507866|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:0:0:0:0,0:30,32:0,0:0,0	53:0:0:0:5,5:48,48:0,1:0,0
4	7679912	.	A	G	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1002|SORCS2|protein_coding|CODING|ENST00000329016|9|1),INTRON(MODIFIER||||1159|SORCS2|protein_coding|CODING|ENST00000507866|9|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	42:0:0:0:42,42:0,0:0,0:0,0	98:0:0:0:90,91:0,0:8,8:0,0
4	7680375	.	T	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1002|SORCS2|protein_coding|CODING|ENST00000329016|9|1),INTRON(MODIFIER||||1159|SORCS2|protein_coding|CODING|ENST00000507866|9|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:2:0:0:0,0:0,0:3,3:32,34	70:0:0:0:0,0:6,6:0,0:64,64
4	7707944	.	T	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1002|SORCS2|protein_coding|CODING|ENST00000329016|14|1),INTRON(MODIFIER||||1159|SORCS2|protein_coding|CODING|ENST00000507866|14|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	21:5:0:0:0,0:0,1:0,3:16,20	34:5:0:0:0,0:6,10:0,3:23,31
4	8404089	.	C	G	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||624|ACOX3|protein_coding|CODING|ENST00000413009|7|1),INTRON(MODIFIER||||700|ACOX3|protein_coding|CODING|ENST00000356406|7|1),INTRON(MODIFIER||||700|ACOX3|protein_coding|CODING|ENST00000503233|7|1),INTRON(MODIFIER|||||ACOX3|retained_intron|CODING|ENST00000510365|5|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:0:0:0:0,0:35,35:0,0:0,0	68:0:0:0:0,0:61,61:7,7:0,0
4	9032485	.	A	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AC;SOMATIC;TQSS=2;TQSS_NT=2;EFF=EXON(MODIFIER|||||RP11-747H12.5|processed_pseudogene|NON_CODING|ENST00000442655|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:0:0:0:34,34:0,1:0,0:0,0	77:1:0:0:69,70:7,13:0,0:0,0
4	9032509	.	A	T	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=EXON(MODIFIER|||||RP11-747H12.5|processed_pseudogene|NON_CODING|ENST00000442655|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:0:0:0:35,35:0,0:0,0:0,1	76:1:0:0:67,68:0,0:0,0:8,14
4	9032537	.	G	A	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=EXON(MODIFIER|||||RP11-747H12.5|processed_pseudogene|NON_CODING|ENST00000442655|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:1:0:0:0,1:0,0:33,34:0,0	68:0:0:0:8,14:0,0:60,60:0,0
4	9545872	rs200906255	T	G	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=9545872;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:0:0:0:0,0:0,0:0,0:40,40	86:2:0:0:0,0:0,0:8,9:76,80
4	10647940	.	C	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||169|CLNK|protein_coding|CODING|ENST00000442825|2|1),INTRON(MODIFIER||||169|CLNK|protein_coding|CODING|ENST00000507719|1|1),INTRON(MODIFIER||||428|CLNK|protein_coding|CODING|ENST00000226951|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:0:0:0:0,0:37,37:0,0:0,0	74:1:0:0:0,0:69,70:0,0:4,4
4	12823983	.	C	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:0:0:0:0,0:32,32:0,0:0,0	71:0:0:0:0,0:65,65:0,0:6,6
4	14262574	.	G	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:0:0:0:0,0:0,0:33,33:0,0	94:2:0:0:0,0:8,9:84,85:0,0
4	14983917	.	A	T	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||AC006296.3|processed_transcript|NON_CODING|ENST00000500394|7|1),INTRON(MODIFIER|||||AC006296.3|processed_transcript|NON_CODING|ENST00000501916|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:2:0:0:36,38:0,0:0,0:0,0	81:1:0:0:72,72:0,0:0,0:8,8
4	16000331	.	A	G	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||830|PROM1|protein_coding|CODING|ENST00000543373|13|1),INTRON(MODIFIER||||834|PROM1|protein_coding|CODING|ENST00000539194|13|1),INTRON(MODIFIER||||842|PROM1|protein_coding|CODING|ENST00000540805|13|1),INTRON(MODIFIER||||856|PROM1|protein_coding|CODING|ENST00000505450|13|1),INTRON(MODIFIER||||856|PROM1|protein_coding|CODING|ENST00000508167|13|1),INTRON(MODIFIER||||865|PROM1|protein_coding|CODING|ENST00000447510|13|1),INTRON(MODIFIER||||865|PROM1|protein_coding|CODING|ENST00000510224|14|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:0:0:0:33,33:0,0:0,0:0,0	78:1:0:0:71,73:0,0:6,6:0,0
4	16056437	.	C	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||830|PROM1|protein_coding|CODING|ENST00000543373|2|1),INTRON(MODIFIER||||834|PROM1|protein_coding|CODING|ENST00000539194|1|1),INTRON(MODIFIER||||842|PROM1|protein_coding|CODING|ENST00000540805|1|1),INTRON(MODIFIER||||856|PROM1|protein_coding|CODING|ENST00000505450|2|1),INTRON(MODIFIER||||856|PROM1|protein_coding|CODING|ENST00000508167|2|1),INTRON(MODIFIER||||865|PROM1|protein_coding|CODING|ENST00000447510|1|1),INTRON(MODIFIER||||865|PROM1|protein_coding|CODING|ENST00000510224|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:0:0:0:0,0:31,32:0,0:0,0	54:1:0:0:0,1:49,49:0,0:4,4
4	17186772	.	A	G	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-576E20.1|lincRNA|NON_CODING|ENST00000509964|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:1:0:0:32,35:0,0:0,0:0,0	78:0:0:0:71,71:1,1:6,6:0,0
4	21300460	.	C	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||188|KCNIP4|protein_coding|CODING|ENST00000509207|1|1),INTRON(MODIFIER||||216|KCNIP4|protein_coding|CODING|ENST00000447367|1|1),INTRON(MODIFIER||||225|KCNIP4|protein_coding|CODING|ENST00000382148|1|1),INTRON(MODIFIER||||229|KCNIP4|protein_coding|CODING|ENST00000382150|1|1),INTRON(MODIFIER||||250|KCNIP4|protein_coding|CODING|ENST00000382152|1|1),INTRON(MODIFIER|||||KCNIP4|nonsense_mediated_decay|CODING|ENST00000515786|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	41:0:0:0:1,1:40,40:0,0:0,0	88:1:0:0:0,0:83,84:0,0:4,4
4	21501929	.	A	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||188|KCNIP4|protein_coding|CODING|ENST00000509207|1|1),INTRON(MODIFIER||||216|KCNIP4|protein_coding|CODING|ENST00000447367|1|1),INTRON(MODIFIER||||225|KCNIP4|protein_coding|CODING|ENST00000382148|1|1),INTRON(MODIFIER||||250|KCNIP4|protein_coding|CODING|ENST00000382152|1|1),INTRON(MODIFIER|||||KCNIP4|nonsense_mediated_decay|CODING|ENST00000515786|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	28:0:0:0:28,28:0,0:0,0:0,0	88:0:0:0:83,83:0,0:5,5:0,0
4	22627879	.	A	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:0:0:0:31,31:0,0:0,0:0,0	69:0:0:0:63,63:0,0:0,0:6,6
4	23150909	.	A	T	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	43:0:0:0:43,43:0,0:0,0:0,0	83:0:0:0:76,76:0,0:0,0:7,7
4	25682494	.	G	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||689|SLC34A2|protein_coding|CODING|ENST00000503434||1),DOWNSTREAM(MODIFIER||||689|SLC34A2|protein_coding|CODING|ENST00000504570||1),DOWNSTREAM(MODIFIER||||690|SLC34A2|protein_coding|CODING|ENST00000382051||1),DOWNSTREAM(MODIFIER|||||RP11-302F12.1|processed_pseudogene|NON_CODING|ENST00000496507||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:1:0:0:0,0:0,0:32,33:0,0	62:0:0:0:5,5:0,0:57,57:0,0
4	25855622	.	G	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1097|SEL1L3|protein_coding|CODING|ENST00000264868|1|1),INTRON(MODIFIER||||1132|SEL1L3|protein_coding|CODING|ENST00000399878|1|1),INTRON(MODIFIER||||34|SEL1L3|protein_coding|CODING|ENST00000514872|1|1),INTRON(MODIFIER||||61|SEL1L3|protein_coding|CODING|ENST00000513691|1|1),INTRON(MODIFIER||||74|SEL1L3|protein_coding|CODING|ENST00000510880|1|1),INTRON(MODIFIER||||979|SEL1L3|protein_coding|CODING|ENST00000502949|1|1),INTRON(MODIFIER|||||SEL1L3|processed_transcript|CODING|ENST00000513364|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	17:0:0:0:0,0:0,0:17,17:0,0	74:2:0:0:12,12:0,0:60,62:0,0
4	27542975	.	C	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	27:1:0:0:0,1:26,26:0,0:0,0	67:1:0:0:1,1:58,59:7,7:0,0
4	28096085	.	G	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:0:0:0:0,0:0,0:36,36:0,0	81:3:0:0:0,0:0,0:74,77:4,5
4	28101658	.	T	C	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:3:0:0:0,0:0,0:0,0:35,38	60:0:0:0:0,0:6,6:0,0:54,54
4	29416999	.	C	T	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:0:0:0:0,0:31,31:0,0:0,0	78:0:0:0:0,0:66,67:0,0:12,12
4	30822785	.	C	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1255|PCDH7|protein_coding|CODING|ENST00000543491|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:1:0:0:0,0:32,33:0,0:0,0	78:0:0:0:6,6:72,72:0,0:0,0
4	31177583	.	C	A	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-617I14.1|lincRNA|NON_CODING|ENST00000515292|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:0:0:0:0,0:35,35:0,0:0,0	69:1:0:0:7,7:61,61:0,0:0,1
4	31240468	.	G	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:0:0:0:0,0:0,0:33,33:0,0	85:0:0:0:5,5:0,0:80,80:0,0
4	31906912	.	G	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:1:0:0:0,0:0,0:33,34:0,0	74:1:0:0:5,5:0,0:68,69:0,0
4	32298820	.	C	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:0:0:0:0,0:33,33:0,0:0,0	80:1:0:0:5,5:74,75:0,0:0,0
4	33326979	.	A	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:1:0:0:33,34:0,1:0,0:0,0	79:2:0:0:72,76:0,0:5,7:0,0
4	33835655	.	T	A	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=TT->AT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER|||||RP11-79E3.3|lincRNA|NON_CODING|ENST00000512581|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	45:0:0:0:0,2:0,0:0,0:45,45	82:1:0:0:8,14:0,0:0,0:73,74
4	36850423	.	G	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:0:0:0:0,0:0,0:31,31:0,0	91:2:0:0:6,6:0,0:83,85:0,0
4	36896420	.	G	C	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:1:0:0:0,0:0,0:34,35:0,0	62:0:0:0:1,1:5,5:56,56:0,0
4	38867534	.	C	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER||||132|FAM114A1|protein_coding|CODING|ENST00000510213||1),UPSTREAM(MODIFIER||||356|FAM114A1|protein_coding|CODING|ENST00000515037||1),UPSTREAM(MODIFIER||||563|FAM114A1|protein_coding|CODING|ENST00000358869||1),UPSTREAM(MODIFIER|||||MIR574|miRNA|NON_CODING|ENST00000385209||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	41:0:0:0:0,0:41,41:0,0:0,0	80:3:0:0:0,0:70,72:0,0:7,7
4	39584196	.	A	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||54|C4orf34|protein_coding|CODING|ENST00000511809|2|1),INTRON(MODIFIER||||88|C4orf34|protein_coding|CODING|ENST00000505729|3|1),INTRON(MODIFIER||||99|C4orf34|protein_coding|CODING|ENST00000295958|2|1),INTRON(MODIFIER|||||C4orf34|nonsense_mediated_decay|CODING|ENST00000507613|2|1),INTRON(MODIFIER|||||C4orf34|processed_transcript|CODING|ENST00000510628|1|1),INTRON(MODIFIER|||||C4orf34|processed_transcript|CODING|ENST00000512441|1|1),INTRON(MODIFIER|||||UGDH-AS1|antisense|NON_CODING|ENST00000504032|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:0:0:0:32,32:0,0:0,0:0,0	61:2:0:0:55,57:0,0:0,0:4,4
4	40004109	.	A	G	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:1:0:0:34,35:1,1:0,0:0,0	76:3:0:0:66,67:0,0:7,9:0,0
4	40273819	rs140293772	G	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=40273819;dbSNPBuildID=134;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	28:0:0:0:0,0:0,0:28,28:0,1	71:0:0:0:0,0:0,0:63,63:8,24
4	40273872	.	T	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:0:0:0:0,0:0,0:0,0:30,30	62:0:0:0:0,0:6,15:0,0:56,56
4	40594518	.	C	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||112|RBM47|protein_coding|CODING|ENST00000511598|2|1),INTRON(MODIFIER||||136|RBM47|protein_coding|CODING|ENST00000514782|1|1),INTRON(MODIFIER||||157|RBM47|protein_coding|CODING|ENST00000505414|2|1),INTRON(MODIFIER||||216|RBM47|protein_coding|CODING|ENST00000515053|1|1),INTRON(MODIFIER||||524|RBM47|protein_coding|CODING|ENST00000319592|1|1),INTRON(MODIFIER||||555|RBM47|protein_coding|CODING|ENST00000514014|1|1),INTRON(MODIFIER||||58|RBM47|protein_coding|CODING|ENST00000505220|1|1),INTRON(MODIFIER||||58|RBM47|protein_coding|CODING|ENST00000511902|1|1),INTRON(MODIFIER||||593|RBM47|protein_coding|CODING|ENST00000295971|1|1),INTRON(MODIFIER|||||RBM47|nonsense_mediated_decay|CODING|ENST00000510871|1|1),INTRON(MODIFIER|||||RBM47|retained_intron|CODING|ENST00000513044|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:0:0:0:0,0:33,33:0,0:0,0	60:2:0:0:0,0:53,55:0,0:5,5
4	40602427	.	G	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||112|RBM47|protein_coding|CODING|ENST00000511598|2|1),INTRON(MODIFIER||||136|RBM47|protein_coding|CODING|ENST00000514782|1|1),INTRON(MODIFIER||||157|RBM47|protein_coding|CODING|ENST00000505414|2|1),INTRON(MODIFIER||||216|RBM47|protein_coding|CODING|ENST00000515053|1|1),INTRON(MODIFIER||||524|RBM47|protein_coding|CODING|ENST00000319592|1|1),INTRON(MODIFIER||||555|RBM47|protein_coding|CODING|ENST00000514014|1|1),INTRON(MODIFIER||||58|RBM47|protein_coding|CODING|ENST00000505220|1|1),INTRON(MODIFIER||||58|RBM47|protein_coding|CODING|ENST00000511902|1|1),INTRON(MODIFIER||||593|RBM47|protein_coding|CODING|ENST00000295971|1|1),INTRON(MODIFIER|||||RBM47|nonsense_mediated_decay|CODING|ENST00000510871|1|1),INTRON(MODIFIER|||||RBM47|retained_intron|CODING|ENST00000513044|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:1:0:0:0,0:0,0:28,29:0,0	75:1:0:0:0,0:0,0:68,69:6,6
4	42703125	.	C	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||RP11-109E24.1|lincRNA|NON_CODING|ENST00000511279||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:0:0:0:0,0:34,34:0,0:0,0	94:0:0:0:0,0:89,91:5,6:0,0
4	42803621	.	T	C	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:0:0:0:0,0:0,0:0,0:34,34	77:1:0:0:0,0:5,5:0,0:71,72
4	44680677	.	G	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->GT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=EXON(MODIFIER|||||GUF1|nonsense_mediated_decay|CODING|ENST00000513775|1|1),INTRON(MODIFIER|||||GUF1|processed_transcript|CODING|ENST00000506793|1|1),NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|cGc/cTc|R13L|669|GUF1|protein_coding|CODING|ENST00000281543|1|1),UPSTREAM(MODIFIER|||||YIPF7|processed_transcript|CODING|ENST00000508947||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	42:0:0:0:0,0:0,0:42,42:0,0	64:1:0:0:0,0:0,0:59,60:4,4
4	45810564	.	A	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:1:0:0:30,31:0,0:0,0:0,0	57:1:0:0:50,51:6,6:0,0:0,0
4	45833552	.	G	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	28:0:0:0:0,0:0,0:28,28:0,0	78:1:0:0:0,0:6,6:71,72:0,0
4	47647368	.	G	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1005|CORIN|protein_coding|CODING|ENST00000505909|12|1),INTRON(MODIFIER||||1042|CORIN|protein_coding|CODING|ENST00000273857|13|1),INTRON(MODIFIER||||734|CORIN|protein_coding|CODING|ENST00000504584|12|1),INTRON(MODIFIER||||903|CORIN|protein_coding|CODING|ENST00000508498|12|1),INTRON(MODIFIER||||975|CORIN|protein_coding|CODING|ENST00000502252|12|1),INTRON(MODIFIER|||||CORIN|retained_intron|CODING|ENST00000505754|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:2:0:0:0,0:0,0:28,29:0,1	77:4:0:0:4,4:0,0:69,73:0,0
4	49113103	.	A	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	53:6:0:0:46,68:1,2:0,1:0,2	115:10:0:0:94,153:3,12:0,0:8,19
4	49129450	.	G	A	.	PASS	NT=ref;QSS=25;QSS_NT=25;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	61:11:4:0:0,3:0,0:49,137:1,6	155:25:6:0:8,19:1,3:121,296:0,10
4	49136140	.	C	T	.	PASS	NT=ref;QSS=24;QSS_NT=24;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	77:4:1:0:1,3:71,124:0,0:1,3	138:18:2:0:0,15:114,223:0,0:6,10
4	49139445	.	T	C	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	69:26:0:0:0,1:0,4:1,3:42,116	129:46:0:0:0,1:7,10:0,4:76,199
4	49163796	.	C	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	89:3:0:0:0,0:84,93:1,1:1,2	212:4:0:0:0,0:197,210:1,1:10,13
4	49169951	.	C	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	77:2:0:0:0,0:74,85:0,0:1,2	165:0:0:0:0,0:156,179:0,0:9,12
4	49169995	.	C	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	84:2:0:0:0,0:81,95:0,1:1,2	178:4:0:0:0,0:165,191:0,0:9,14
4	49182910	rs201363652	C	T	.	PASS	NT=ref;QSS=28;QSS_NT=28;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=49182910;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	58:1:0:0:0,0:57,64:0,0:0,0	139:1:0:0:0,0:125,139:0,0:13,17
4	49230624	.	A	G	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=AA->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=DOWNSTREAM(MODIFIER|||||SNX18P23|processed_pseudogene|NON_CODING|ENST00000510867||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	55:0:0:0:55,58:0,0:0,2:0,0	102:0:0:0:94,99:0,0:8,10:0,0
4	49234476	.	T	C	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||RP11-1281K21.1|processed_pseudogene|NON_CODING|ENST00000428211||1),DOWNSTREAM(MODIFIER|||||RP11-1281K21.5|processed_pseudogene|NON_CODING|ENST00000503930||1),DOWNSTREAM(MODIFIER|||||SNX18P23|processed_pseudogene|NON_CODING|ENST00000510867||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	52:0:0:0:0,0:0,1:0,0:52,57	148:2:0:0:0,0:7,9:0,1:139,157
4	49236314	.	T	G	.	PASS	NT=ref;QSS=23;QSS_NT=23;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||RP11-1281K21.1|processed_pseudogene|NON_CODING|ENST00000428211||1),DOWNSTREAM(MODIFIER|||||RP11-1281K21.5|processed_pseudogene|NON_CODING|ENST00000503930||1),INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||SNX18P23|processed_pseudogene|NON_CODING|ENST00000510867||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	55:0:0:0:0,0:0,0:0,0:55,60	108:1:0:0:0,0:1,1:7,8:99,107
4	49246200	.	C	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-1281K21.1|processed_pseudogene|NON_CODING|ENST00000428211|1|1),INTRON(MODIFIER|||||RP11-1281K21.1|processed_pseudogene|NON_CODING|ENST00000506408|2|1),UPSTREAM(MODIFIER|||||RP11-1281K21.6|processed_pseudogene|NON_CODING|ENST00000514812||1),UPSTREAM(MODIFIER|||||RP11-1281K21.7|processed_pseudogene|NON_CODING|ENST00000510932||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:0:0:0:0,0:34,40:0,0:0,0	96:0:0:0:0,0:87,92:9,10:0,0
4	49300468	rs76459996	A	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AC;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=49300468;dbSNPBuildID=131;SSR=0;SAO=0;VP=050000000001000102000100;WGT=1;VC=SNV;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:0:0:0:33,54:0,1:0,0:0,0	83:2:0:0:76,130:5,10:0,0:0,0
4	49302017	.	G	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:0:0:0:0,0:0,0:30,35:0,0	43:0:0:0:0,0:1,1:36,39:6,8
4	49302067	rs6810727	T	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=49302067;dbSNPBuildID=116;SSR=0;SAO=0;VP=050000000001000002000100;WGT=1;VC=SNV;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	27:1:0:0:0,0:0,0:0,0:26,32	39:0:0:0:0,0:6,7:0,0:33,36
4	49314051	.	C	T	.	PASS	NT=ref;QSS=26;QSS_NT=26;SGT=CC->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	68:3:0:0:0,0:65,88:0,0:0,3	140:3:0:0:0,0:129,183:0,0:8,14
4	49318418	.	C	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	54:1:0:0:0,1:52,62:1,1:0,1	120:0:0:0:2,2:110,134:0,0:8,9
4	49324527	rs4065755	A	C	.	PASS	NT=ref;QSS=25;QSS_NT=25;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=49324527;dbSNPBuildID=108;SSR=0;SAO=0;VP=050100000001000002000100;WGT=1;VC=SNV;SLO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	50:1:0:0:49,51:0,0:0,0:0,0	149:3:0:0:139,142:7,12:0,0:0,0
4	49325349	.	A	T	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	65:3:0:0:61,72:0,0:0,0:1,1	103:11:0:0:87,112:0,1:0,0:5,7
4	49519340	.	G	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||RP11-241F15.4|processed_pseudogene|NON_CODING|ENST00000509521||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	50:4:0:0:0,0:0,0:46,58:0,0	105:11:0:0:0,0:0,0:89,122:5,7
4	49535170	rs4079386	T	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=49535170;dbSNPBuildID=108;SSR=1;SAO=0;VP=050100000001000002000140;WGT=1;VC=SNV;SLO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	43:0:0:0:0,0:0,0:0,0:43,44	90:2:0:0:0,0:0,0:5,9:83,92
4	49539552	rs71236558	C	G	.	PASS	NT=ref;QSS=26;QSS_NT=26;SGT=CC->CG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=49539552;dbSNPBuildID=130;SSR=0;SAO=0;VP=050100000001040102000100;WGT=1;VC=SNV;SLO;VLD;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	85:1:0:0:1,1:82,94:0,0:1,1	236:3:0:0:0,0:224,255:9,10:0,0
4	49563518	rs187719458	G	T	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||RP11-241F15.7|unprocessed_pseudogene|NON_CODING|ENST00000513357||1),EXON(MODIFIER|||||SNX18P24|processed_pseudogene|NON_CODING|ENST00000505249|1|1),UPSTREAM(MODIFIER|||||RP11-241F15.9|processed_pseudogene|NON_CODING|ENST00000416712||1);RSPOS=49563518;dbSNPBuildID=135;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	59:2:0:0:0,0:0,0:56,60:1,1	136:2:0:0:0,0:0,0:128,136:6,6
4	49572444	rs79658642	C	T	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=49572444;dbSNPBuildID=131;SSR=0;SAO=0;VP=050000000001040102000100;WGT=1;VC=SNV;VLD;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	97:3:0:0:0,0:94,105:0,0:0,1	225:3:0:0:0,0:214,229:0,1:8,14
4	49572882	rs72624180	G	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=49572882;dbSNPBuildID=130;SSR=0;SAO=0;VP=050000000001000002000100;WGT=1;VC=SNV;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	57:2:0:0:0,2:0,0:55,60:0,0	132:3:0:0:17,23:1,1:111,118:0,0
4	49609964	rs145729462	C	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->CG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=49609964;dbSNPBuildID=134;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:1:0:0:1,1:29,30:0,1:0,0	87:1:0:0:0,0:78,82:8,14:0,0
4	52683176	.	T	A	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:0:0:0:0,0:0,0:0,0:40,40	62:1:0:0:6,13:0,0:0,0:55,55
4	54281696	rs202228364	G	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||378|FIP1L1|protein_coding|CODING|ENST00000507922|10|1),INTRON(MODIFIER||||520|FIP1L1|protein_coding|CODING|ENST00000306932|8|1),INTRON(MODIFIER||||588|FIP1L1|protein_coding|CODING|ENST00000358575|10|1),INTRON(MODIFIER||||594|FIP1L1|protein_coding|CODING|ENST00000337488|11|1),INTRON(MODIFIER||||849|FIP1L1|protein_coding|CODING|ENST00000507166|11|1),INTRON(MODIFIER|||||FIP1L1|retained_intron|CODING|ENST00000505125|8|1),INTRON(MODIFIER|||||FIP1L1|retained_intron|CODING|ENST00000513975|10|1);RSPOS=54281696;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000080001000402000100;WGT=1;VC=SNV;INT;HD;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:0:0:0:0,0:0,0:39,39:0,0	76:0:0:0:0,0:0,0:70,70:6,6
4	55327056	.	C	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	28:0:0:0:0,0:28,28:0,0:0,0	48:0:0:0:4,4:44,47:0,0:0,0
4	58865633	.	G	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:0:0:0:0,0:0,0:34,34:0,0	79:2:0:0:0,0:0,0:71,72:6,7
4	59405379	.	T	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||RP11-577G20.1|lincRNA|NON_CODING|ENST00000509824||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	41:0:0:0:0,0:1,1:0,0:40,40	75:3:0:0:0,0:6,6:0,0:66,69
4	59408283	.	A	G	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=AA->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:0:0:0:39,39:0,0:0,0:0,0	57:0:0:0:49,50:0,0:8,8:0,0
4	60175606	.	C	T	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:0:0:0:0,0:38,38:0,0:0,0	83:0:0:0:0,0:73,73:0,0:10,10
4	60499051	.	A	G	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||RP11-725D20.1|lincRNA|NON_CODING|ENST00000504537||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	41:0:0:0:41,41:0,0:0,0:0,0	79:1:0:0:71,72:0,0:6,6:1,1
4	60587217	.	C	T	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:0:0:0:0,0:37,37:0,0:0,0	73:1:0:0:0,0:67,67:0,0:5,6
4	60669958	.	G	A	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	44:2:0:0:0,0:0,0:42,44:0,0	86:0:0:0:6,6:1,1:79,80:0,0
4	61289568	rs28735160	G	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=61289568;dbSNPBuildID=125;SSR=0;SAO=0;VP=050000000005040002000100;WGT=1;VC=SNV;ASP;VLD;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	20:3:1:0:0,1:0,0:17,65:0,0	55:13:1:0:7,13:0,0:34,115:1,1
4	61991483	.	T	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	28:1:0:0:0,0:0,0:0,0:27,29	70:5:0:0:0,0:0,1:6,6:59,63
4	62233310	.	A	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1240|LPHN3|protein_coding|CODING|ENST00000512091|1|1),INTRON(MODIFIER||||1469|LPHN3|protein_coding|CODING|ENST00000514591|1|1),INTRON(MODIFIER|||||LPHN3|processed_transcript|CODING|ENST00000509779|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	19:1:0:0:17,21:1,1:0,0:0,0	55:0:0:0:45,54:0,0:10,12:0,0
4	63714703	.	A	C	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:0:0:0:39,39:0,0:0,0:0,0	78:0:0:0:71,73:7,7:0,0:0,0
4	64217940	.	G	C	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||LARP1BP1|processed_pseudogene|NON_CODING|ENST00000506036||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:1:0:0:0,0:0,0:35,36:0,0	90:3:0:0:0,0:6,6:79,82:2,2
4	67010116	.	C	G	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-25H12.1|processed_transcript|NON_CODING|ENST00000508572|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:1:0:0:0,0:33,34:0,0:0,0	83:2:0:0:0,0:73,73:8,9:0,0
4	67116938	.	C	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:1:0:0:0,0:39,40:0,0:0,0	86:2:0:0:0,0:78,79:6,10:0,0
4	68038786	.	C	T	.	PASS	NT=ref;QSS=25;QSS_NT=25;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	52:1:0:0:0,0:51,52:0,0:0,0	79:1:0:0:0,0:72,72:0,0:6,6
4	69262870	.	T	A	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	41:0:0:0:0,0:0,0:0,0:41,41	63:1:0:0:5,5:0,0:0,0:57,58
4	69641497	.	T	G	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:0:0:0:0,0:0,0:0,0:32,32	68:0:0:0:0,0:0,0:5,5:63,63
4	70687251	.	C	T	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:0:0:0:0,0:36,36:0,0:0,0	78:0:0:0:0,0:73,73:0,0:5,5
4	70744083	.	C	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:1:0:0:0,0:34,36:0,0:0,0	64:0:0:0:0,0:59,59:0,0:5,5
4	71732109	.	A	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:0:0:0:29,29:1,1:0,0:0,0	63:0:0:0:56,57:0,0:7,7:0,0
4	72474963	.	A	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:5:0:0:26,31:0,0:0,0:0,0	66:4:0:0:55,57:7,9:0,0:0,0
4	72681912	rs201475105	T	C	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=72681912;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	25:1:1:0:0,0:0,0:0,0:24,26	46:1:1:0:0,0:8,8:0,0:37,41
4	72681914	rs199727597	C	T	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=CC->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=72681914;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	26:1:1:0:0,0:25,27:0,0:0,0	44:1:1:0:0,0:35,39:0,0:8,8
4	75519681	.	C	T	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:0:0:0:0,0:34,34:0,0:0,0	74:0:0:0:0,0:65,65:0,0:9,9
4	75642391	.	A	G	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:1:0:0:34,37:0,0:0,0:0,0	56:3:0:0:46,54:0,0:7,9:0,0
4	79212162	.	C	T	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1976|FRAS1|protein_coding|CODING|ENST00000325942|14|1),INTRON(MODIFIER||||4012|FRAS1|protein_coding|CODING|ENST00000264895|14|1),INTRON(MODIFIER||||737|FRAS1|protein_coding|CODING|ENST00000264899|14|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:0:0:0:0,0:40,40:0,0:0,0	67:0:0:0:0,0:60,60:0,0:7,7
4	79448271	.	T	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||4012|FRAS1|protein_coding|CODING|ENST00000264895|70|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:0:0:0:0,0:0,0:0,0:31,31	83:1:0:0:6,6:0,1:0,0:76,76
4	79552222	.	A	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||Y_RNA|misc_RNA|NON_CODING|ENST00000364128||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:0:0:0:29,29:0,0:0,0:0,0	78:3:0:0:68,71:7,7:0,0:0,0
4	80023673	.	A	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-438E5.1|antisense|NON_CODING|ENST00000509088|3|1),INTRON(MODIFIER|||||RP11-438E5.1|antisense|NON_CODING|ENST00000510667|2|1),INTRON(MODIFIER|||||RP11-438E5.1|antisense|NON_CODING|ENST00000513153|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:0:0:0:31,31:0,0:0,0:0,0	56:1:1:0:47,49:0,0:0,0:8,8
4	80682574	.	A	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AC;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	19:0:0:0:19,19:0,0:0,0:0,0	49:3:0:0:33,34:12,14:1,1:0,0
4	81212171	.	A	C	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||268|FGF5|protein_coding|CODING|ENST00000312465||1),DOWNSTREAM(MODIFIER|||||FGF5|processed_transcript|CODING|ENST00000503413||1),INTRON(MODIFIER|||||FGF5|nonsense_mediated_decay|CODING|ENST00000507780|2|1),UTR_3_PRIME(MODIFIER||||123|FGF5|protein_coding|CODING|ENST00000456523|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:0:0:0:40,41:0,0:0,0:0,0	57:3:0:0:47,49:7,12:0,0:0,0
4	81212204	.	A	T	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||123|FGF5|protein_coding|CODING|ENST00000456523||1),DOWNSTREAM(MODIFIER||||268|FGF5|protein_coding|CODING|ENST00000312465||1),DOWNSTREAM(MODIFIER|||||FGF5|processed_transcript|CODING|ENST00000503413||1),INTRON(MODIFIER|||||FGF5|nonsense_mediated_decay|CODING|ENST00000507780|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	41:0:0:0:41,41:0,0:0,0:0,0	55:1:0:0:48,49:0,0:0,0:6,10
4	81307032	.	C	T	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||RP11-395C17.1|processed_pseudogene|NON_CODING|ENST00000506637||1),INTRON(MODIFIER||||233|C4orf22|protein_coding|CODING|ENST00000358105|2|1),INTRON(MODIFIER||||250|C4orf22|protein_coding|CODING|ENST00000508675|2|1),INTRON(MODIFIER|||||C4orf22|nonsense_mediated_decay|CODING|ENST00000513920|2|1),INTRON(MODIFIER|||||C4orf22|nonsense_mediated_decay|CODING|ENST00000514249|2|1),INTRON(MODIFIER|||||C4orf22|processed_transcript|CODING|ENST00000502497|2|1),INTRON(MODIFIER|||||C4orf22|processed_transcript|CODING|ENST00000503883|2|1),INTRON(MODIFIER|||||C4orf22|processed_transcript|CODING|ENST00000512931|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:0:0:0:0,0:39,39:0,0:0,0	67:0:0:0:0,0:62,63:0,0:5,5
4	82944426	rs78419532	G	C	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-689K5.3|processed_transcript|NON_CODING|ENST00000508294|1|1),INTRON(MODIFIER|||||RP11-689K5.3|processed_transcript|NON_CODING|ENST00000510780|1|1),INTRON(MODIFIER|||||RP11-689K5.3|processed_transcript|NON_CODING|ENST00000512343|1|1),INTRON(MODIFIER|||||RP11-689K5.3|processed_transcript|NON_CODING|ENST00000512716|1|1),INTRON(MODIFIER|||||RP11-689K5.3|processed_transcript|NON_CODING|ENST00000514050|1|1);RSPOS=82944426;dbSNPBuildID=131;SSR=0;SAO=0;VP=050000000005040102000100;WGT=1;VC=SNV;ASP;VLD;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:0:0:0:0,0:0,0:38,43:0,0	53:0:0:0:0,0:6,8:47,58:0,0
4	83247052	.	C	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:1:0:0:0,0:35,36:0,0:0,0	77:1:0:0:0,1:70,73:0,0:6,6
4	84835964	.	A	G	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-8L2.1|processed_transcript|NON_CODING|ENST00000513489|4|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:0:0:0:33,33:0,0:0,0:0,0	79:1:0:0:73,74:0,0:5,5:0,0
4	86354762	.	C	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	28:0:0:0:0,0:28,28:0,0:0,0	80:1:0:0:0,0:74,74:0,0:5,6
4	86550508	.	A	G	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||246|ARHGAP24|protein_coding|CODING|ENST00000503995|2|1),INTRON(MODIFIER||||748|ARHGAP24|protein_coding|CODING|ENST00000395184|2|1),INTRON(MODIFIER||||81|ARHGAP24|protein_coding|CODING|ENST00000512201|1|1),INTRON(MODIFIER|||||ARHGAP24|processed_transcript|CODING|ENST00000506421|2|1),INTRON(MODIFIER|||||ARHGAP24|retained_intron|CODING|ENST00000509709|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:0:0:0:32,32:0,0:0,0:0,0	73:0:0:0:69,69:0,0:4,4:0,0
4	89034482	.	C	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=SYNONYMOUS_CODING(LOW|SILENT|ctG/ctA|L389|611|ABCG2|protein_coding|CODING|ENST00000515655|9|1),SYNONYMOUS_CODING(LOW|SILENT|ctG/ctA|L389|655|ABCG2|protein_coding|CODING|ENST00000237612|9|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:0:0:0:0,0:35,35:0,0:0,0	67:0:0:0:0,0:63,63:0,0:4,4
4	92165185	.	T	G	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||900|FAM190A|protein_coding|CODING|ENST00000333691|10|1),INTRON(MODIFIER||||900|FAM190A|protein_coding|CODING|ENST00000509176|10|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:0:0:0:0,0:0,0:0,0:32,32	73:0:0:0:0,0:0,0:6,6:67,69
4	92175330	.	A	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||900|FAM190A|protein_coding|CODING|ENST00000333691|10|1),INTRON(MODIFIER||||900|FAM190A|protein_coding|CODING|ENST00000509176|10|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	28:1:0:0:27,28:0,0:0,0:0,0	59:0:0:0:53,53:0,0:6,6:0,0
4	93162731	.	T	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:1:0:0:0,0:0,0:0,0:30,31	73:0:0:0:0,0:0,0:4,4:69,69
4	93670231	.	A	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1007|GRID2|protein_coding|CODING|ENST00000282020|2|1),INTRON(MODIFIER||||912|GRID2|protein_coding|CODING|ENST00000510992|2|1),INTRON(MODIFIER|||||GRID2|processed_transcript|CODING|ENST00000505687|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	28:1:0:0:26,27:1,1:0,0:0,0	74:7:0:0:59,63:0,2:8,10:0,0
4	95598717	.	C	T	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-554D13.1|lincRNA|NON_CODING|ENST00000514304|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	43:1:0:0:0,0:42,43:0,0:0,0	75:0:0:0:1,1:69,69:0,0:5,5
4	96578483	.	A	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:0:0:0:34,34:0,0:0,0:0,0	85:1:0:0:78,79:0,0:0,0:6,6
4	97339919	.	C	A	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-145G20.1|lincRNA|NON_CODING|ENST00000522173|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:1:0:0:0,0:34,36:0,0:0,0	63:1:0:0:6,6:56,57:0,0:0,0
4	99251990	.	T	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||121|RAP1GDS1|protein_coding|CODING|ENST00000509011|2|1),INTRON(MODIFIER||||146|RAP1GDS1|protein_coding|CODING|ENST00000508213|2|1),INTRON(MODIFIER||||157|RAP1GDS1|protein_coding|CODING|ENST00000511212|2|1),INTRON(MODIFIER||||157|RAP1GDS1|protein_coding|CODING|ENST00000514122|2|1),INTRON(MODIFIER||||516|RAP1GDS1|protein_coding|CODING|ENST00000264572|2|1),INTRON(MODIFIER||||558|RAP1GDS1|protein_coding|CODING|ENST00000408900|2|1),INTRON(MODIFIER||||559|RAP1GDS1|protein_coding|CODING|ENST00000380158|2|1),INTRON(MODIFIER||||607|RAP1GDS1|protein_coding|CODING|ENST00000408927|2|1),INTRON(MODIFIER||||607|RAP1GDS1|protein_coding|CODING|ENST00000453712|2|1),INTRON(MODIFIER||||608|RAP1GDS1|protein_coding|CODING|ENST00000339360|2|1),INTRON(MODIFIER|||||RAP1GDS1|nonsense_mediated_decay|CODING|ENST00000503667|3|1),INTRON(MODIFIER|||||RAP1GDS1|nonsense_mediated_decay|CODING|ENST00000508490|3|1),INTRON(MODIFIER|||||RAP1GDS1|nonsense_mediated_decay|CODING|ENST00000510870|2|1),INTRON(MODIFIER|||||RAP1GDS1|nonsense_mediated_decay|CODING|ENST00000512857|2|1),INTRON(MODIFIER|||||RAP1GDS1|nonsense_mediated_decay|CODING|ENST00000515187|2|1),INTRON(MODIFIER|||||RAP1GDS1|retained_intron|CODING|ENST00000505378|2|1),INTRON(MODIFIER|||||RAP1GDS1|retained_intron|CODING|ENST00000507303|2|1),INTRON(MODIFIER|||||RAP1GDS1|retained_intron|CODING|ENST00000511379|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:1:0:0:0,0:0,0:2,3:27,27	71:4:0:0:0,0:7,7:0,1:60,64
4	99360941	.	A	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||516|RAP1GDS1|protein_coding|CODING|ENST00000264572|12|1),INTRON(MODIFIER||||558|RAP1GDS1|protein_coding|CODING|ENST00000408900|13|1),INTRON(MODIFIER||||559|RAP1GDS1|protein_coding|CODING|ENST00000380158|13|1),INTRON(MODIFIER||||607|RAP1GDS1|protein_coding|CODING|ENST00000408927|14|1),INTRON(MODIFIER||||607|RAP1GDS1|protein_coding|CODING|ENST00000453712|14|1),INTRON(MODIFIER||||608|RAP1GDS1|protein_coding|CODING|ENST00000339360|14|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:0:0:0:30,30:0,0:0,0:0,0	59:0:0:0:50,50:0,0:6,6:3,3
4	102128971	.	G	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||131|PPP3CA|protein_coding|CODING|ENST00000525819|1|1),INTRON(MODIFIER||||146|PPP3CA|protein_coding|CODING|ENST00000529324|1|1),INTRON(MODIFIER||||289|PPP3CA|protein_coding|CODING|ENST00000512215|1|1),INTRON(MODIFIER||||423|PPP3CA|protein_coding|CODING|ENST00000507176|1|1),INTRON(MODIFIER||||454|PPP3CA|protein_coding|CODING|ENST00000523694|1|1),INTRON(MODIFIER||||469|PPP3CA|protein_coding|CODING|ENST00000323055|1|1),INTRON(MODIFIER||||511|PPP3CA|protein_coding|CODING|ENST00000394853|1|1),INTRON(MODIFIER||||521|PPP3CA|protein_coding|CODING|ENST00000394854|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:1:0:0:0,0:0,0:31,32:1,1	71:2:0:0:6,6:0,0:63,65:0,0
4	103085204	.	C	G	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:0:0:0:0,0:32,35:0,0:0,0	78:3:0:0:0,0:67,70:8,8:0,0
4	103166288	.	T	C	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:0:0:0:0,0:0,0:0,0:35,35	89:0:0:0:0,0:6,6:0,0:83,83
4	103829459	.	T	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=DOWNSTREAM(MODIFIER||||253|SLC9B1|protein_coding|CODING|ENST00000514340||1),DOWNSTREAM(MODIFIER|||||SLC9B1|nonsense_mediated_decay|CODING|ENST00000510243||1),INTRON(MODIFIER||||127|SLC9B1|protein_coding|CODING|ENST00000511253|2|1),INTRON(MODIFIER||||475|SLC9B1|protein_coding|CODING|ENST00000394789|9|1),INTRON(MODIFIER||||515|SLC9B1|protein_coding|CODING|ENST00000296422|9|1),INTRON(MODIFIER|||||SLC9B1|nonsense_mediated_decay|CODING|ENST00000503584|7|1),INTRON(MODIFIER|||||SLC9B1|nonsense_mediated_decay|CODING|ENST00000504216|6|1),INTRON(MODIFIER|||||SLC9B1|nonsense_mediated_decay|CODING|ENST00000514972|8|1),INTRON(MODIFIER|||||SLC9B1|processed_transcript|CODING|ENST00000509614|1|1),INTRON(MODIFIER|||||SLC9B1|processed_transcript|CODING|ENST00000512651|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:0:0:0:0,0:0,1:0,0:34,36	93:1:0:0:0,0:6,6:0,0:86,94
4	103847592	.	C	A	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=CC->AC;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER||||253|SLC9B1|protein_coding|CODING|ENST00000514340|5|1),INTRON(MODIFIER||||475|SLC9B1|protein_coding|CODING|ENST00000394789|7|1),INTRON(MODIFIER||||515|SLC9B1|protein_coding|CODING|ENST00000296422|7|1),INTRON(MODIFIER|||||SLC9B1|nonsense_mediated_decay|CODING|ENST00000503584|4|1),INTRON(MODIFIER|||||SLC9B1|nonsense_mediated_decay|CODING|ENST00000504216|3|1),INTRON(MODIFIER|||||SLC9B1|nonsense_mediated_decay|CODING|ENST00000510243|3|1),INTRON(MODIFIER|||||SLC9B1|nonsense_mediated_decay|CODING|ENST00000514972|6|1),INTRON(MODIFIER|||||SLC9B1|processed_transcript|CODING|ENST00000512651|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	60:0:0:0:0,2:60,62:0,0:0,0	88:1:0:0:7,7:80,94:0,0:0,0
4	103882674	.	G	A	.	PASS	NT=ref;QSS=24;QSS_NT=24;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||253|SLC9B1|protein_coding|CODING|ENST00000514340|2|1),INTRON(MODIFIER||||475|SLC9B1|protein_coding|CODING|ENST00000394789|3|1),INTRON(MODIFIER||||515|SLC9B1|protein_coding|CODING|ENST00000296422|3|1),INTRON(MODIFIER|||||SLC9B1|nonsense_mediated_decay|CODING|ENST00000503584|3|1),INTRON(MODIFIER|||||SLC9B1|nonsense_mediated_decay|CODING|ENST00000504216|2|1),INTRON(MODIFIER|||||SLC9B1|nonsense_mediated_decay|CODING|ENST00000510243|2|1),INTRON(MODIFIER|||||SLC9B1|nonsense_mediated_decay|CODING|ENST00000514972|3|1),UPSTREAM(MODIFIER|||||ACTR3BP4|processed_pseudogene|NON_CODING|ENST00000503033||1),UPSTREAM(MODIFIER|||||ACTR3BP4|retrotransposed|NON_CODING|ENST00000541553||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:0:0:0:0,0:0,0:29,29:0,0	73:0:0:0:13,18:0,0:60,61:0,0
4	106482666	.	A	G	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||219|ARHGEF38|protein_coding|CODING|ENST00000265154|1|1),INTRON(MODIFIER||||777|ARHGEF38|protein_coding|CODING|ENST00000420470|1|1),INTRON(MODIFIER|||||ARHGEF38|processed_transcript|CODING|ENST00000506828|1|1),UPSTREAM(MODIFIER|||||ARHGEF38-IT1|sense_intronic|NON_CODING|ENST00000512262||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:1:0:0:29,36:0,0:1,1:0,0	86:3:0:0:67,78:0,0:16,19:0,0
4	107393168	.	A	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:1:0:0:30,31:0,0:0,0:0,0	73:0:0:0:69,69:0,0:0,0:4,4
4	107834418	.	T	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	28:0:0:0:0,0:0,0:0,0:28,28	73:1:0:0:0,0:9,9:0,0:63,66
4	107865532	.	G	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||159|DKK2|protein_coding|CODING|ENST00000513208|2|1),INTRON(MODIFIER||||213|DKK2|protein_coding|CODING|ENST00000510463|3|1),INTRON(MODIFIER||||259|DKK2|protein_coding|CODING|ENST00000285311|1|1),INTRON(MODIFIER|||||DKK2|retained_intron|CODING|ENST00000510534|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:3:0:0:0,0:0,0:27,30:0,0	78:1:0:0:0,0:5,5:72,73:0,0
4	107867264	.	T	C	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||159|DKK2|protein_coding|CODING|ENST00000513208|2|1),INTRON(MODIFIER||||213|DKK2|protein_coding|CODING|ENST00000510463|3|1),INTRON(MODIFIER||||259|DKK2|protein_coding|CODING|ENST00000285311|1|1),INTRON(MODIFIER|||||DKK2|retained_intron|CODING|ENST00000510534|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:1:0:0:0,0:0,0:0,0:36,37	66:1:0:0:0,0:5,5:0,0:60,61
4	111332286	rs201872523	C	A	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||ENPEP|processed_transcript|CODING|ENST00000510961|1|1);RSPOS=111332286;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:0:0:0:0,0:39,39:0,0:0,0	86:2:0:0:7,9:77,79:0,0:0,0
4	111332303	rs139421356	G	C	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||ENPEP|processed_transcript|CODING|ENST00000510961|1|1);RSPOS=111332303;dbSNPBuildID=134;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	42:1:0:0:0,0:0,0:41,43:0,0	83:2:0:0:0,0:7,9:74,77:0,0
4	111332348	.	A	G	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||ENPEP|processed_transcript|CODING|ENST00000510961|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	41:0:0:0:41,42:0,0:0,0:0,0	77:1:0:0:69,71:0,1:7,9:0,0
4	111332349	.	A	G	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER|||||ENPEP|processed_transcript|CODING|ENST00000510961|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	41:0:0:0:41,41:0,0:0,1:0,0	76:1:0:0:68,71:0,0:7,9:0,0
4	113806679	.	A	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1113|ANK2|protein_coding|CODING|ENST00000503271|1|1),INTRON(MODIFIER||||1610|ANK2|protein_coding|CODING|ENST00000503423|1|1),INTRON(MODIFIER||||1863|ANK2|protein_coding|CODING|ENST00000506722|1|1),UPSTREAM(MODIFIER|||||RP11-119H12.5|processed_pseudogene|NON_CODING|ENST00000511960||1),UPSTREAM(MODIFIER|||||RP11-119H12.6|processed_transcript|NON_CODING|ENST00000511590||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:0:0:0:29,31:0,0:0,0:0,0	88:2:0:0:80,83:0,0:6,7:0,0
4	114145347	.	T	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1113|ANK2|protein_coding|CODING|ENST00000503271|5|1),INTRON(MODIFIER||||1610|ANK2|protein_coding|CODING|ENST00000503423|5|1),INTRON(MODIFIER||||1729|ANK2|protein_coding|CODING|ENST00000504454|5|1),INTRON(MODIFIER||||176|ANK2|protein_coding|CODING|ENST00000508613|4|1),INTRON(MODIFIER||||1863|ANK2|protein_coding|CODING|ENST00000506722|5|1),INTRON(MODIFIER||||1872|ANK2|protein_coding|CODING|ENST00000394537|4|1),INTRON(MODIFIER||||3924|ANK2|protein_coding|CODING|ENST00000264366|4|1),INTRON(MODIFIER||||3957|ANK2|protein_coding|CODING|ENST00000357077|4|1),INTRON(MODIFIER||||64|ANK2|protein_coding|CODING|ENST00000515034|4|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:1:0:0:0,0:0,0:0,0:32,33	79:0:0:0:0,0:7,7:0,0:72,72
4	114347962	.	C	T	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	42:0:0:0:0,0:42,43:0,0:0,0	96:1:0:0:0,0:88,91:0,0:7,8
4	114585662	.	A	G	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||478|CAMK2D|protein_coding|CODING|ENST00000296402|2|1),INTRON(MODIFIER||||478|CAMK2D|protein_coding|CODING|ENST00000379773|2|1),INTRON(MODIFIER||||478|CAMK2D|protein_coding|CODING|ENST00000394524|2|1),INTRON(MODIFIER||||489|CAMK2D|protein_coding|CODING|ENST00000508738|2|1),INTRON(MODIFIER||||492|CAMK2D|protein_coding|CODING|ENST00000394522|2|1),INTRON(MODIFIER||||498|CAMK2D|protein_coding|CODING|ENST00000514328|2|1),INTRON(MODIFIER||||499|CAMK2D|protein_coding|CODING|ENST00000342666|2|1),INTRON(MODIFIER||||510|CAMK2D|protein_coding|CODING|ENST00000394526|2|1),INTRON(MODIFIER||||510|CAMK2D|protein_coding|CODING|ENST00000515496|2|1),INTRON(MODIFIER||||512|CAMK2D|protein_coding|CODING|ENST00000505990|2|1),INTRON(MODIFIER||||513|CAMK2D|protein_coding|CODING|ENST00000418639|2|1),INTRON(MODIFIER||||519|CAMK2D|protein_coding|CODING|ENST00000429180|2|1),INTRON(MODIFIER||||524|CAMK2D|protein_coding|CODING|ENST00000454265|2|1),INTRON(MODIFIER||||533|CAMK2D|protein_coding|CODING|ENST00000511664|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:1:0:0:33,35:0,0:0,0:0,0	71:2:0:0:65,66:0,0:4,5:0,0
4	117750061	.	A	C	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:0:0:0:40,40:0,0:0,0:0,0	60:0:0:0:55,55:5,5:0,0:0,0
4	118558495	.	C	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||AC092661.1|lincRNA|NON_CODING|ENST00000422145|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	27:0:0:0:0,0:27,27:0,0:0,0	78:2:0:0:1,1:69,69:0,0:6,7
4	119037453	.	C	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||561|NDST3|protein_coding|CODING|ENST00000433996|2|1),INTRON(MODIFIER||||873|NDST3|protein_coding|CODING|ENST00000296499|4|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:1:0:0:0,0:28,29:0,0:0,0	86:2:0:0:0,0:80,82:4,4:0,0
4	119312738	.	G	T	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	42:2:0:0:0,0:0,1:40,41:0,0	83:0:0:0:0,0:0,0:75,76:8,8
4	121042910	.	T	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-679C8.2|processed_transcript|NON_CODING|ENST00000504106|2|1),INTRON(MODIFIER|||||RP11-679C8.2|processed_transcript|NON_CODING|ENST00000508362|2|1),INTRON(MODIFIER|||||RP11-679C8.2|processed_transcript|NON_CODING|ENST00000511064|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	21:0:0:0:0,0:0,0:0,0:21,21	50:0:0:0:8,8:0,0:0,0:42,44
4	123480493	.	A	G	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:1:0:0:35,36:0,0:0,0:0,0	70:1:0:0:63,64:0,0:6,6:0,0
4	127679609	.	G	T	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-123G5.1|lincRNA|NON_CODING|ENST00000515428|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:0:0:0:0,0:0,0:37,37:0,0	65:0:0:0:0,0:1,1:58,58:6,6
4	129327679	.	C	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-420A23.1|processed_transcript|NON_CODING|ENST00000505133|3|1),INTRON(MODIFIER|||||RP11-420A23.1|processed_transcript|NON_CODING|ENST00000509834|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:0:0:0:0,0:30,30:0,0:0,0	66:1:0:0:4,5:61,61:0,0:0,0
4	129699434	.	C	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	23:1:0:0:0,0:22,24:0,0:0,0	50:2:0:0:0,0:40,45:0,1:8,8
4	130791669	.	T	C	.	PASS	NT=ref;QSS=24;QSS_NT=24;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-422J15.1|processed_transcript|NON_CODING|ENST00000507099|2|1),INTRON(MODIFIER|||||RP11-422J15.1|processed_transcript|NON_CODING|ENST00000513875|11|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	51:0:0:0:0,0:0,0:0,0:51,52	63:0:0:0:1,1:4,4:0,0:58,58
4	133844093	.	C	G	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-404I7.2|lincRNA|NON_CODING|ENST00000509628|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:0:0:0:0,0:32,32:0,0:0,0	82:1:0:0:1,1:73,74:7,7:0,0
4	134997352	.	C	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:0:0:0:0,0:29,29:0,0:0,0	85:1:0:0:6,7:78,79:0,0:0,0
4	135105723	.	T	G	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:0:0:0:0,0:0,0:0,0:31,31	61:2:0:0:0,1:0,0:4,4:55,56
4	135505247	.	A	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:0:0:0:31,31:1,1:0,0:0,0	70:1:0:0:65,65:0,0:4,5:0,0
4	135566371	rs36153665	C	T	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=135566371;dbSNPBuildID=126;SSR=0;SAO=0;VP=050000000001000002000100;WGT=1;VC=SNV;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	44:1:0:0:0,0:43,54:0,0:0,0	71:5:0:0:0,0:61,82:0,0:5,7
4	135571166	.	A	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:0:0:0:30,30:0,0:0,0:0,0	63:0:0:0:58,58:5,5:0,0:0,0
4	135877573	.	C	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||RP11-192C21.1|processed_pseudogene|NON_CODING|ENST00000459634||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:2:1:0:1,1:31,39:0,0:0,0	81:10:0:0:3,9:62,89:0,0:6,11
4	136246228	.	A	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:1:0:0:30,31:0,0:0,0:0,0	81:0:0:0:73,73:0,0:0,0:8,9
4	139369285	.	G	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:1:0:0:0,0:0,0:33,34:0,0	97:0:1:0:9,9:0,0:88,88:0,0
4	141792156	rs28709783	C	A	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||297|RNF150|protein_coding|CODING|ENST00000379512|6|1),INTRON(MODIFIER||||297|RNF150|protein_coding|CODING|ENST00000420921|7|1),INTRON(MODIFIER||||396|RNF150|protein_coding|CODING|ENST00000306799|6|1),INTRON(MODIFIER||||438|RNF150|protein_coding|CODING|ENST00000515673|6|1);RSPOS=141792156;dbSNPBuildID=125;SSR=16;SAO=0;VP=050100080005000102000100;GENEINFO=RNF150:57484;WGT=1;VC=SNV;SLO;INT;ASP;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:0:0:0:0,0:36,36:0,0:0,0	83:1:0:0:6,6:76,78:0,0:0,0
4	141843421	.	G	A	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||229|RNF150|protein_coding|CODING|ENST00000506101|5|1),INTRON(MODIFIER||||297|RNF150|protein_coding|CODING|ENST00000379512|5|1),INTRON(MODIFIER||||297|RNF150|protein_coding|CODING|ENST00000420921|6|1),INTRON(MODIFIER||||396|RNF150|protein_coding|CODING|ENST00000306799|5|1),INTRON(MODIFIER||||405|RNF150|protein_coding|CODING|ENST00000507500|5|1),INTRON(MODIFIER||||438|RNF150|protein_coding|CODING|ENST00000515673|5|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:0:0:0:0,0:0,0:36,36:0,0	74:1:0:0:5,5:0,0:68,69:0,0
4	141921227	.	A	G	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=AA->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER||||297|RNF150|protein_coding|CODING|ENST00000379512|1|1),INTRON(MODIFIER||||297|RNF150|protein_coding|CODING|ENST00000420921|2|1),INTRON(MODIFIER||||396|RNF150|protein_coding|CODING|ENST00000306799|1|1),INTRON(MODIFIER||||405|RNF150|protein_coding|CODING|ENST00000507500|1|1),INTRON(MODIFIER||||438|RNF150|protein_coding|CODING|ENST00000515673|1|1),UPSTREAM(MODIFIER||||229|RNF150|protein_coding|CODING|ENST00000506101||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	25:1:0:0:24,30:0,0:0,1:0,0	45:1:0:0:34,41:0,0:10,10:0,0
4	145530424	.	G	C	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	41:0:0:0:0,0:0,0:41,41:0,0	77:0:0:0:0,0:7,7:70,70:0,0
4	145602834	.	C	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||700|HHIP|protein_coding|CODING|ENST00000296575|4|1),INTRON(MODIFIER|||||HHIP|processed_transcript|CODING|ENST00000509630|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:0:0:0:0,0:33,33:0,0:0,0	78:2:0:0:0,0:69,71:0,0:7,8
4	146384287	.	G	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:0:0:0:0,0:0,0:31,31:0,0	91:0:0:0:0,0:9,9:81,81:1,1
4	148323895	.	G	A	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	43:0:0:0:0,0:0,0:43,44:0,0	87:0:0:0:7,7:0,0:80,80:0,0
4	151037037	.	A	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||765|DCLK2|protein_coding|CODING|ENST00000506325|2|1),INTRON(MODIFIER||||766|DCLK2|protein_coding|CODING|ENST00000296550|2|1),INTRON(MODIFIER||||783|DCLK2|protein_coding|CODING|ENST00000302176|2|1),INTRON(MODIFIER|||||DCLK2|nonsense_mediated_decay|CODING|ENST00000411937|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:1:0:0:30,30:0,0:0,1:0,0	83:0:0:0:78,78:5,5:0,0:0,0
4	151080964	.	G	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||765|DCLK2|protein_coding|CODING|ENST00000506325|2|1),INTRON(MODIFIER||||766|DCLK2|protein_coding|CODING|ENST00000296550|2|1),INTRON(MODIFIER||||783|DCLK2|protein_coding|CODING|ENST00000302176|2|1),INTRON(MODIFIER|||||DCLK2|nonsense_mediated_decay|CODING|ENST00000411937|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:0:0:0:0,0:0,0:29,29:0,0	65:1:0:0:8,8:1,1:55,57:0,0
4	151321465	.	G	C	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||2575|LRBA|protein_coding|CODING|ENST00000507224|47|1),INTRON(MODIFIER||||2851|LRBA|protein_coding|CODING|ENST00000510413|47|1),INTRON(MODIFIER||||2852|LRBA|protein_coding|CODING|ENST00000535741|47|1),INTRON(MODIFIER||||2863|LRBA|protein_coding|CODING|ENST00000357115|48|1),INTRON(MODIFIER|||||LRBA|processed_transcript|CODING|ENST00000503716|8|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	43:0:0:0:0,0:0,0:42,42:1,1	70:0:0:0:0,0:4,4:66,66:0,0
4	152172278	.	C	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:1:0:0:0,0:32,33:0,0:0,0	61:1:0:0:6,6:54,55:0,0:0,0
4	152177985	.	T	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||RP11-731D1.1|processed_transcript|NON_CODING|ENST00000513425||1),UPSTREAM(MODIFIER|||||RP11-731D1.1|unprocessed_pseudogene|NON_CODING|ENST00000504587||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:0:0:0:0,0:0,0:0,0:34,34	71:0:0:0:0,0:5,5:0,0:66,66
4	152177997	.	A	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||RP11-731D1.1|processed_transcript|NON_CODING|ENST00000513425||1),UPSTREAM(MODIFIER|||||RP11-731D1.1|unprocessed_pseudogene|NON_CODING|ENST00000504587||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	27:0:0:0:27,27:0,0:0,0:0,0	78:0:0:0:73,73:0,0:5,5:0,0
4	155630526	.	G	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||68|LRAT|protein_coding|CODING|ENST00000502525|2|1),INTRON(MODIFIER|||||LRAT|processed_transcript|CODING|ENST00000499392|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	28:0:0:0:0,0:0,0:28,28:0,0	79:1:0:0:9,9:0,0:68,68:1,1
4	158450660	.	C	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:1:0:0:0,1:30,30:0,0:0,0	72:1:0:0:0,0:66,67:1,1:4,4
4	159063036	.	A	G	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||107|FAM198B|protein_coding|CODING|ENST00000592586|2|1),INTRON(MODIFIER||||186|FAM198B|protein_coding|CODING|ENST00000590648|2|1),INTRON(MODIFIER||||519|FAM198B|protein_coding|CODING|ENST00000296530|3|1),INTRON(MODIFIER||||519|FAM198B|protein_coding|CODING|ENST00000585682|3|1),INTRON(MODIFIER||||527|FAM198B|protein_coding|CODING|ENST00000393807|4|1),INTRON(MODIFIER|||||FAM198B|processed_transcript|CODING|ENST00000589306|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	23:1:0:0:22,25:0,0:0,0:0,1	67:1:0:0:54,56:0,0:12,13:0,1
4	159456728	.	A	G	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||189|RXFP1|protein_coding|CODING|ENST00000423548|1|1),INTRON(MODIFIER||||652|RXFP1|protein_coding|CODING|ENST00000448688|1|1),INTRON(MODIFIER||||676|RXFP1|protein_coding|CODING|ENST00000460056|3|1),INTRON(MODIFIER||||709|RXFP1|protein_coding|CODING|ENST00000343542|1|1),INTRON(MODIFIER||||724|RXFP1|protein_coding|CODING|ENST00000470033|1|1),INTRON(MODIFIER||||757|RXFP1|protein_coding|CODING|ENST00000307765|1|1),INTRON(MODIFIER|||||RXFP1|nonsense_mediated_decay|CODING|ENST00000342048|1|1),INTRON(MODIFIER|||||RXFP1|nonsense_mediated_decay|CODING|ENST00000471616|1|1),INTRON(MODIFIER|||||RXFP1|processed_transcript|CODING|ENST00000472969|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:0:0:0:35,35:0,0:0,0:0,0	72:0:0:0:68,68:0,0:4,4:0,0
4	160048521	.	A	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||MIR3688-1|miRNA|NON_CODING|ENST00000583455||1),INTRON(MODIFIER||||278|RAPGEF2|protein_coding|CODING|ENST00000505478|1|1),UPSTREAM(MODIFIER|||||AC095064.1|miRNA|NON_CODING|ENST00000577188||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:0:0:0:31,32:0,0:0,0:0,0	80:2:0:0:72,75:2,2:4,4:0,0
4	161073921	.	C	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	27:0:0:0:0,0:27,30:0,0:0,2	73:0:0:0:0,0:59,60:0,0:14,14
4	161521439	.	T	G	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	42:1:0:0:0,0:0,0:0,0:41,42	75:1:0:0:0,0:0,0:7,7:67,68
4	162178648	.	G	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	28:1:0:0:0,0:0,0:27,28:0,0	62:0:0:0:0,0:6,6:56,57:0,0
4	163232170	.	A	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:0:0:0:29,29:0,0:0,0:0,0	89:0:0:0:82,82:0,0:7,7:0,0
4	163307312	.	C	G	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:0:0:0:1,1:35,35:0,0:0,0	86:0:0:0:0,0:77,77:8,8:1,1
4	163695497	rs115644618	C	T	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=163695497;GMAF=0.005;dbSNPBuildID=132;SSR=0;SAO=0;VP=050000000005040014000100;WGT=1;VC=SNV;ASP;VLD;KGPhase1;KGPROD	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	44:1:0:0:0,0:42,43:1,1:0,0	96:3:0:0:0,0:84,85:0,1:9,10
4	164476206	.	T	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||272|MARCH1|protein_coding|CODING|ENST00000339875|2|1),INTRON(MODIFIER||||289|MARCH1|protein_coding|CODING|ENST00000274056|4|1),INTRON(MODIFIER||||289|MARCH1|protein_coding|CODING|ENST00000503008|6|1),INTRON(MODIFIER||||545|MARCH1|protein_coding|CODING|ENST00000514618|8|1),INTRON(MODIFIER|||||MARCH1|nonsense_mediated_decay|CODING|ENST00000510786|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:0:0:0:0,0:0,0:1,1:30,31	78:1:0:0:0,0:5,5:0,0:72,73
4	165149779	.	G	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||140|MARCH1|protein_coding|CODING|ENST00000507270|1|1),INTRON(MODIFIER||||289|MARCH1|protein_coding|CODING|ENST00000503008|1|1),INTRON(MODIFIER||||545|MARCH1|protein_coding|CODING|ENST00000514618|1|1),INTRON(MODIFIER|||||MARCH1|processed_transcript|CODING|ENST00000505391|2|1),INTRON(MODIFIER|||||MARCH1|processed_transcript|CODING|ENST00000508725|2|1),INTRON(MODIFIER|||||MARCH1|processed_transcript|CODING|ENST00000510075|1|1),INTRON(MODIFIER|||||MARCH1|processed_transcript|CODING|ENST00000515471|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	27:0:0:0:0,0:0,0:27,27:0,0	67:0:0:0:0,0:6,6:61,61:0,0
4	166643390	.	T	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-340B18.1|lincRNA|NON_CODING|ENST00000507838|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:0:0:0:0,0:0,0:0,0:32,32	80:1:0:0:0,0:7,7:0,0:72,73
4	166668654	.	G	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-340B18.1|lincRNA|NON_CODING|ENST00000507838|4|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:0:0:0:0,0:0,0:31,31:0,0	75:0:0:0:4,4:0,0:71,71:0,0
4	167179263	.	T	G	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:0:0:0:0,0:0,0:0,0:34,34	73:1:0:0:0,0:0,0:6,6:66,67
4	167373492	.	C	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-217C7.1|lincRNA|NON_CODING|ENST00000514134|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:0:0:0:0,0:31,31:0,0:0,0	56:2:0:0:0,0:48,50:0,0:6,6
4	168138287	.	A	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||114|SPOCK3|protein_coding|CODING|ENST00000506697|1|1),INTRON(MODIFIER||||114|SPOCK3|protein_coding|CODING|ENST00000512042|1|1),INTRON(MODIFIER||||160|SPOCK3|protein_coding|CODING|ENST00000509854|2|1),INTRON(MODIFIER||||171|SPOCK3|protein_coding|CODING|ENST00000510403|2|1),INTRON(MODIFIER||||304|SPOCK3|protein_coding|CODING|ENST00000535728|1|1),INTRON(MODIFIER||||313|SPOCK3|protein_coding|CODING|ENST00000512648|2|1),INTRON(MODIFIER||||316|SPOCK3|protein_coding|CODING|ENST00000541354|2|1),INTRON(MODIFIER||||338|SPOCK3|protein_coding|CODING|ENST00000512681|2|1),INTRON(MODIFIER||||338|SPOCK3|protein_coding|CODING|ENST00000541637|1|1),INTRON(MODIFIER||||340|SPOCK3|protein_coding|CODING|ENST00000534949|1|1),INTRON(MODIFIER||||385|SPOCK3|protein_coding|CODING|ENST00000421836|2|1),INTRON(MODIFIER||||393|SPOCK3|protein_coding|CODING|ENST00000510741|2|1),INTRON(MODIFIER||||433|SPOCK3|protein_coding|CODING|ENST00000357545|2|1),INTRON(MODIFIER||||433|SPOCK3|protein_coding|CODING|ENST00000504953|2|1),INTRON(MODIFIER||||433|SPOCK3|protein_coding|CODING|ENST00000511269|1|1),INTRON(MODIFIER||||436|SPOCK3|protein_coding|CODING|ENST00000357154|2|1),INTRON(MODIFIER||||436|SPOCK3|protein_coding|CODING|ENST00000502330|2|1),INTRON(MODIFIER||||436|SPOCK3|protein_coding|CODING|ENST00000506886|2|1),INTRON(MODIFIER||||436|SPOCK3|protein_coding|CODING|ENST00000511531|2|1),INTRON(MODIFIER|||||SPOCK3|nonsense_mediated_decay|CODING|ENST00000502741|2|1),INTRON(MODIFIER|||||SPOCK3|nonsense_mediated_decay|CODING|ENST00000502821|2|1),INTRON(MODIFIER|||||SPOCK3|nonsense_mediated_decay|CODING|ENST00000505187|2|1),INTRON(MODIFIER|||||SPOCK3|nonsense_mediated_decay|CODING|ENST00000507086|2|1),INTRON(MODIFIER|||||SPOCK3|nonsense_mediated_decay|CODING|ENST00000507370|2|1),INTRON(MODIFIER|||||SPOCK3|nonsense_mediated_decay|CODING|ENST00000511226|2|1),INTRON(MODIFIER|||||SPOCK3|nonsense_mediated_decay|CODING|ENST00000511905|2|1),INTRON(MODIFIER|||||SPOCK3|nonsense_mediated_decay|CODING|ENST00000515143|1|1),INTRON(MODIFIER|||||SPOCK3|nonsense_mediated_decay|CODING|ENST00000515316|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:0:0:0:31,31:0,0:0,0:0,0	81:0:0:0:75,75:0,0:0,0:6,6
4	168391009	.	A	T	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:0:0:0:40,40:0,0:0,0:0,0	67:1:0:0:59,60:0,0:0,0:7,7
4	168590642	.	C	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:1:0:0:0,0:32,33:0,0:0,0	48:1:0:0:4,4:43,45:0,0:0,0
4	168826528	.	T	C	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:1:0:0:0,0:0,0:0,0:35,37	89:3:0:0:0,0:7,9:0,0:79,83
4	169034499	rs13120520	G	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||324|ANXA10|protein_coding|CODING|ENST00000359299|1|1),UPSTREAM(MODIFIER|||||RP11-310I9.1|antisense|NON_CODING|ENST00000506926||1);RSPOS=169034499;dbSNPBuildID=121;SSR=0;SAO=0;VP=050100080001040102000100;GENEINFO=ANXA10:11199;WGT=1;VC=SNV;SLO;INT;VLD;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	16:0:0:0:0,0:0,0:16,19:0,0	38:2:0:0:0,0:1,2:28,35:7,12
4	169136643	rs74344455	C	A	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||1712|DDX60|protein_coding|CODING|ENST00000393743||1),INTERGENIC(MODIFIER||||||||||1);RSPOS=169136643;dbSNPBuildID=131;SSR=0;SAO=0;VP=050000000001000102000100;WGT=1;VC=SNV;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:2:0:0:0,0:30,32:0,0:0,0	65:1:0:0:14,14:50,51:0,0:0,0
4	170990518	.	C	T	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||179|AADAT|protein_coding|CODING|ENST00000502392||1),DOWNSTREAM(MODIFIER||||208|AADAT|protein_coding|CODING|ENST00000507375||1),DOWNSTREAM(MODIFIER||||219|AADAT|protein_coding|CODING|ENST00000510340||1),DOWNSTREAM(MODIFIER|||||AADAT|retained_intron|CODING|ENST00000505906||1),INTRON(MODIFIER||||425|AADAT|protein_coding|CODING|ENST00000337664|6|1),INTRON(MODIFIER||||425|AADAT|protein_coding|CODING|ENST00000353187|7|1),INTRON(MODIFIER||||425|AADAT|protein_coding|CODING|ENST00000515480|7|1),INTRON(MODIFIER||||429|AADAT|protein_coding|CODING|ENST00000509167|7|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:0:0:0:0,0:40,40:0,0:0,0	67:0:0:0:0,0:63,63:0,0:4,4
4	172809350	.	T	A	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||601|GALNTL6|protein_coding|CODING|ENST00000506823|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:1:0:0:0,0:0,0:0,0:28,28	74:0:0:0:11,11:0,0:0,0:63,63
4	173381728	.	A	C	.	PASS	NT=ref;QSS=23;QSS_NT=23;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||584|GALNTL6|protein_coding|CODING|ENST00000508122|4|1),INTRON(MODIFIER||||601|GALNTL6|protein_coding|CODING|ENST00000506823|5|1),INTRON(MODIFIER|||||GALNTL6|processed_transcript|CODING|ENST00000457021|4|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	45:0:0:0:45,45:0,0:0,0:0,0	74:2:0:0:66,71:6,6:0,0:0,0
4	173925197	.	T	G	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||584|GALNTL6|protein_coding|CODING|ENST00000508122|9|1),INTRON(MODIFIER||||601|GALNTL6|protein_coding|CODING|ENST00000506823|10|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:1:0:0:0,0:0,0:0,0:36,37	77:1:0:0:0,0:0,0:6,6:70,71
4	177159189	.	G	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||276|ASB5|protein_coding|CODING|ENST00000512254|1|1),INTRON(MODIFIER||||329|ASB5|protein_coding|CODING|ENST00000296525|1|1),INTRON(MODIFIER|||||ASB5|processed_transcript|CODING|ENST00000510578|1|1),UPSTREAM(MODIFIER|||||ASB5|processed_transcript|CODING|ENST00000511879||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:0:0:0:0,0:0,0:29,29:0,0	77:0:0:0:4,4:0,0:73,75:0,0
4	177173235	rs74566854	G	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||329|ASB5|protein_coding|CODING|ENST00000296525|1|1),UPSTREAM(MODIFIER|||||ASB5|processed_transcript|CODING|ENST00000510578||1);RSPOS=177173235;dbSNPBuildID=131;SSR=0;SAO=0;VP=050100080005000102000100;GENEINFO=ASB5:140458;WGT=1;VC=SNV;SLO;INT;ASP;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	26:0:0:0:0,0:0,0:26,26:0,0	64:0:2:0:8,8:0,0:56,57:0,0
4	179297834	.	A	G	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:0:0:0:34,35:0,0:0,0:0,0	88:2:0:0:81,82:0,0:5,6:0,0
4	180722179	.	G	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:0:0:0:0,0:0,0:37,37:0,0	80:0:0:0:0,0:0,0:76,76:4,4
4	181068037	.	C	A	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:0:0:0:0,0:34,34:0,0:0,0	71:1:0:0:5,5:65,66:0,0:0,0
4	181623204	.	A	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	27:0:0:0:27,27:0,0:0,0:0,0	74:0:0:0:67,68:7,7:0,0:0,0
4	182027773	.	C	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||LINC00290|lincRNA|NON_CODING|ENST00000512487|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:0:0:0:0,0:33,34:0,0:0,0	59:0:0:0:4,4:55,55:0,0:0,0
4	183509584	.	G	A	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||181|ODZ3|protein_coding|CODING|ENST00000510504|1|1),INTRON(MODIFIER||||2699|ODZ3|protein_coding|CODING|ENST00000406950|2|1),INTRON(MODIFIER||||2699|ODZ3|protein_coding|CODING|ENST00000511685|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:0:0:0:0,0:0,0:38,38:0,0	81:0:0:0:9,9:0,0:72,72:0,0
4	183542844	.	T	C	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||181|ODZ3|protein_coding|CODING|ENST00000510504|2|1),INTRON(MODIFIER||||2699|ODZ3|protein_coding|CODING|ENST00000406950|3|1),INTRON(MODIFIER||||2699|ODZ3|protein_coding|CODING|ENST00000511685|4|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	28:0:0:0:0,0:0,0:0,0:28,136	52:6:0:0:0,0:7,11:0,0:39,308
4	184772020	.	G	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||STOX2|processed_transcript|CODING|ENST00000511250||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	45:2:1:0:0,1:0,0:43,46:0,0	83:5:0:0:5,9:0,0:73,85:0,0
4	186051133	.	T	C	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:0:0:0:0,0:0,0:0,0:36,36	80:4:0:0:0,0:9,11:0,0:67,69
4	186920660	.	A	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:2:0:0:35,40:1,1:1,1:0,0	67:0:0:0:55,57:1,1:11,13:0,0
4	187302815	rs115727622	T	C	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=TT->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER|||||RP11-215A19.1|processed_transcript|NON_CODING|ENST00000505103|1|1);RSPOS=187302815;GMAF=0.1603;dbSNPBuildID=132;SSR=0;SAO=0;VP=050000080005070016000100;GENEINFO=LOC285441:285441;WGT=1;VC=SNV;INT;ASP;VLD;G5A;G5;KGPhase1;KGPROD;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:1:0:0:0,0:0,2:0,0:38,39	76:0:0:0:0,0:11,14:2,2:63,64
4	187302982	rs13145985	C	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-215A19.1|processed_transcript|NON_CODING|ENST00000505103|1|1);RSPOS=187302982;dbSNPBuildID=121;SSR=0;SAO=0;VP=050000080009040002000100;GENEINFO=LOC285441:285441;WGT=1;VC=SNV;INT;CFL;VLD;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:0:0:0:0,0:33,33:0,0:0,0	84:0:0:0:0,0:74,74:0,0:10,10
4	187354554	.	A	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-215A19.1|processed_transcript|NON_CODING|ENST00000505103|1|1),INTRON(MODIFIER|||||RP11-215A19.1|processed_transcript|NON_CODING|ENST00000508110|1|1),INTRON(MODIFIER|||||RP11-215A19.1|processed_transcript|NON_CODING|ENST00000508287|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:3:0:0:25,55:1,5:0,1:0,0	52:8:0:0:37,138:0,7:7,16:0,0
4	187357553	.	C	T	.	PASS	NT=ref;QSS=28;QSS_NT=28;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-215A19.1|processed_transcript|NON_CODING|ENST00000505103|1|1),INTRON(MODIFIER|||||RP11-215A19.1|processed_transcript|NON_CODING|ENST00000508110|1|1),INTRON(MODIFIER|||||RP11-215A19.1|processed_transcript|NON_CODING|ENST00000508287|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	61:5:0:0:0,0:56,109:0,0:0,1	93:9:0:0:0,0:75,149:0,1:9,19
4	187399941	.	T	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-215A19.1|processed_transcript|NON_CODING|ENST00000505103|1|1),INTRON(MODIFIER|||||RP11-215A19.1|processed_transcript|NON_CODING|ENST00000508110|1|1),INTRON(MODIFIER|||||RP11-215A19.1|processed_transcript|NON_CODING|ENST00000508287|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:0:0:0:0,0:0,0:0,0:31,32	98:5:0:0:0,0:11,16:0,1:82,84
4	187468072	rs71640067	C	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||350|MTNR1A|protein_coding|CODING|ENST00000307161|1|1);RSPOS=187468072;dbSNPBuildID=130;SSR=0;SAO=0;VP=050100080001040102000100;GENEINFO=MTNR1A:4543;WGT=1;VC=SNV;SLO;INT;VLD;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	16:0:0:0:0,1:16,55:0,7:0,0	21:2:0:0:0,0:6,28:13,21:0,0
4	187913216	.	G	T	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-217E13.1|lincRNA|NON_CODING|ENST00000503037|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	41:1:0:0:0,0:0,0:40,41:0,0	60:0:0:0:0,0:0,0:55,56:5,5
4	188136096	.	C	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:0:0:0:0,0:29,29:0,0:0,0	72:1:0:0:0,0:63,65:8,8:0,0
4	188173124	.	T	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:0:0:0:0,0:0,0:0,0:30,30	69:0:0:0:0,0:5,5:0,0:64,64
4	188279382	.	T	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:1:0:0:0,0:0,0:0,0:32,33	92:2:0:0:0,0:6,6:0,0:84,85
4	188562222	.	A	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-565A3.1|lincRNA|NON_CODING|ENST00000505488|2|1),INTRON(MODIFIER|||||RP11-565A3.2|lincRNA|NON_CODING|ENST00000507817|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:0:0:0:30,30:0,0:0,0:0,0	66:1:0:0:61,63:0,0:4,4:0,0
4	188649759	rs58797710	A	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=188649759;dbSNPBuildID=129;SSR=0;SAO=0;VP=050000000005000102000100;WGT=1;VC=SNV;ASP;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:2:0:0:27,29:0,0:0,0:0,0	57:0:0:0:52,52:5,5:0,0:0,0
4	189005963	.	C	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:1:0:0:0,0:29,31:0,0:0,0	71:0:0:0:0,0:64,68:7,7:0,0
4	189792358	rs112618906	C	T	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=189792358;dbSNPBuildID=132;SSR=0;SAO=0;VP=050000000001000102000100;WGT=1;VC=SNV;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:1:0:0:0,0:38,39:0,0:0,0	79:3:0:0:0,0:67,69:1,1:8,13
4	189898559	.	G	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:1:0:0:0,0:0,0:35,37:0,0	61:1:0:0:6,6:0,0:53,54:1,2
4	190621912	.	A	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:3:0:0:29,77:0,0:0,2:0,0	71:8:0:0:57,174:0,0:6,10:0,0
4	190724981	rs13134430	C	G	.	PASS	NT=ref;QSS=36;QSS_NT=36;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||AF146191.4|processed_transcript|NON_CODING|ENST00000506276|2|1);RSPOS=190724981;GMAF=0.0495;dbSNPBuildID=121;SSR=0;SAO=0;VP=050000000005040016000100;WGT=1;VC=SNV;ASP;VLD;KGPhase1;KGPROD;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:0:0:0:0,0:34,34:0,0:0,0	104:3:0:0:0,0:78,78:23,26:0,0
4	190724982	rs13134431	C	G	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||AF146191.4|processed_transcript|NON_CODING|ENST00000506276|2|1);RSPOS=190724982;GMAF=0.0417;dbSNPBuildID=121;SSR=0;SAO=0;VP=050000000001040016000100;WGT=1;VC=SNV;VLD;KGPhase1;KGPROD;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:0:0:0:0,0:32,32:1,1:0,0	104:3:0:0:0,0:83,83:18,21:0,0
4	190831415	rs77910625	T	A	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||AF146191.4|processed_transcript|NON_CODING|ENST00000501825|2|1),INTRON(MODIFIER|||||AF146191.4|processed_transcript|NON_CODING|ENST00000506276|2|1),INTRON(MODIFIER|||||AF146191.4|processed_transcript|NON_CODING|ENST00000508156|2|1),INTRON(MODIFIER|||||AF146191.4|processed_transcript|NON_CODING|ENST00000511785|1|1);RSPOS=190831415;dbSNPBuildID=131;SSR=0;SAO=0;VP=050100080005000102000100;WGT=1;VC=SNV;SLO;INT;ASP;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:0:0:0:0,0:0,0:0,0:33,33	64:1:0:0:7,10:0,0:0,0:56,57
4	190832780	.	G	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER|||||AF146191.4|processed_transcript|NON_CODING|ENST00000501825|2|1),INTRON(MODIFIER|||||AF146191.4|processed_transcript|NON_CODING|ENST00000506276|2|1),INTRON(MODIFIER|||||AF146191.4|processed_transcript|NON_CODING|ENST00000508156|2|1),INTRON(MODIFIER|||||AF146191.4|processed_transcript|NON_CODING|ENST00000511785|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:1:0:0:0,0:0,0:37,43:0,0	108:0:0:0:5,5:0,0:103,113:0,0
4	190846306	rs73614755	C	A	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=CC->AC;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER|||||AF146191.4|processed_transcript|NON_CODING|ENST00000501825|2|1),INTRON(MODIFIER|||||AF146191.4|processed_transcript|NON_CODING|ENST00000506276|2|1),INTRON(MODIFIER|||||AF146191.4|processed_transcript|NON_CODING|ENST00000508156|2|1);RSPOS=190846306;dbSNPBuildID=130;SSR=0;SAO=0;VP=050000080001000002000100;WGT=1;VC=SNV;INT;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	51:1:0:0:0,1:50,65:0,0:0,0	160:2:0:0:11,15:147,179:0,0:0,1
4	190846333	rs75705675	T	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=TT->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER|||||AF146191.4|processed_transcript|NON_CODING|ENST00000501825|2|1),INTRON(MODIFIER|||||AF146191.4|processed_transcript|NON_CODING|ENST00000506276|2|1),INTRON(MODIFIER|||||AF146191.4|processed_transcript|NON_CODING|ENST00000508156|2|1);RSPOS=190846333;RV;dbSNPBuildID=131;SSR=0;SAO=0;VP=050000080001040102000100;WGT=1;VC=SNV;INT;VLD;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	49:2:0:0:1,1:0,1:0,0:46,56	141:2:0:0:0,0:6,10:0,0:133,156
4	190846340	.	G	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->CG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER|||||AF146191.4|processed_transcript|NON_CODING|ENST00000501825|2|1),INTRON(MODIFIER|||||AF146191.4|processed_transcript|NON_CODING|ENST00000506276|2|1),INTRON(MODIFIER|||||AF146191.4|processed_transcript|NON_CODING|ENST00000508156|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	47:2:0:0:0,0:0,1:45,53:0,1	135:1:0:0:0,0:6,11:128,148:0,0
4	190859073	.	T	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||AF146191.4|processed_transcript|NON_CODING|ENST00000501825|1|1),INTRON(MODIFIER|||||AF146191.4|processed_transcript|NON_CODING|ENST00000506276|1|1),INTRON(MODIFIER|||||AF146191.4|processed_transcript|NON_CODING|ENST00000508156|1|1),UPSTREAM(MODIFIER||||101|FRG1|protein_coding|CODING|ENST00000524583||1),UPSTREAM(MODIFIER||||115|FRG1|protein_coding|CODING|ENST00000531991||1),UPSTREAM(MODIFIER||||258|FRG1|protein_coding|CODING|ENST00000226798||1),UPSTREAM(MODIFIER|||||FRG1|nonsense_mediated_decay|CODING|ENST00000533157||1),UPSTREAM(MODIFIER|||||FRG1|processed_transcript|CODING|ENST00000514482||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:0:0:0:0,0:0,0:0,0:35,36	73:1:0:0:0,0:5,5:0,0:67,72
4	190859113	rs62344053	T	A	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||AF146191.4|processed_transcript|NON_CODING|ENST00000501825|1|1),INTRON(MODIFIER|||||AF146191.4|processed_transcript|NON_CODING|ENST00000506276|1|1),INTRON(MODIFIER|||||AF146191.4|processed_transcript|NON_CODING|ENST00000508156|1|1),UPSTREAM(MODIFIER||||101|FRG1|protein_coding|CODING|ENST00000524583||1),UPSTREAM(MODIFIER||||115|FRG1|protein_coding|CODING|ENST00000531991||1),UPSTREAM(MODIFIER||||258|FRG1|protein_coding|CODING|ENST00000226798||1),UPSTREAM(MODIFIER|||||FRG1|nonsense_mediated_decay|CODING|ENST00000533157||1),UPSTREAM(MODIFIER|||||FRG1|processed_transcript|CODING|ENST00000514482||1);RSPOS=190859113;dbSNPBuildID=129;SSR=1;SAO=0;VP=050000080005000002000140;WGT=1;VC=SNV;INT;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:1:0:0:0,1:0,0:0,1:36,37	73:0:0:0:9,14:0,0:0,0:64,64
4	190871903	.	C	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||101|FRG1|protein_coding|CODING|ENST00000524583|3|1),INTRON(MODIFIER||||115|FRG1|protein_coding|CODING|ENST00000531991|3|1),INTRON(MODIFIER||||258|FRG1|protein_coding|CODING|ENST00000226798|2|1),INTRON(MODIFIER|||||FRG1|nonsense_mediated_decay|CODING|ENST00000533157|3|1),INTRON(MODIFIER|||||FRG1|processed_transcript|CODING|ENST00000514482|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:1:0:0:0,0:34,37:0,0:0,0	68:0:0:0:0,0:63,65:0,0:5,6
5	73891	.	A	G	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:1:0:0:33,35:0,0:0,0:0,0	78:3:0:0:67,70:3,5:5,5:0,0
5	158317	.	C	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||421|PLEKHG4B|protein_coding|CODING|ENST00000502646||1),INTRON(MODIFIER||||1271|PLEKHG4B|protein_coding|CODING|ENST00000283426|9|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:4:0:0:0,0:29,34:0,0:0,0	61:5:0:0:0,0:49,55:0,0:7,7
5	213760	.	T	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||CTD-2083E4.4|retained_intron|NON_CODING|ENST00000565521||1),INTRON(MODIFIER||||260|CCDC127|protein_coding|CODING|ENST00000296824|2|1),INTRON(MODIFIER||||68|CCDC127|protein_coding|CODING|ENST00000441693|1|1),UPSTREAM(MODIFIER||||583|SDHA|protein_coding|CODING|ENST00000504309||1),UPSTREAM(MODIFIER||||616|SDHA|protein_coding|CODING|ENST00000510361||1),UPSTREAM(MODIFIER||||664|SDHA|protein_coding|CODING|ENST00000264932||1),UPSTREAM(MODIFIER|||||SDHA|nonsense_mediated_decay|CODING|ENST00000509632||1),UPSTREAM(MODIFIER|||||SDHA|processed_transcript|CODING|ENST00000506138||1),UPSTREAM(MODIFIER|||||SDHA|retained_intron|CODING|ENST00000502379||1),UPSTREAM(MODIFIER|||||SDHA|retained_intron|CODING|ENST00000504824||1),UPSTREAM(MODIFIER|||||SDHA|retained_intron|CODING|ENST00000505555||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:1:0:0:1,1:0,0:0,0:29,31	87:5:0:0:3,4:9,13:0,0:70,76
5	302037	.	A	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||104|PDCD6|protein_coding|CODING|ENST00000507473|1|1),INTRON(MODIFIER||||189|PDCD6|protein_coding|CODING|ENST00000507528|2|1),INTRON(MODIFIER||||191|PDCD6|protein_coding|CODING|ENST00000264933|2|1),INTRON(MODIFIER||||69|PDCD6|protein_coding|CODING|ENST00000505221|2|1),INTRON(MODIFIER|||||PDCD6|nonsense_mediated_decay|CODING|ENST00000505526|1|1),INTRON(MODIFIER|||||PDCD6|nonsense_mediated_decay|CODING|ENST00000506909|2|1),INTRON(MODIFIER|||||PDCD6|retained_intron|CODING|ENST00000513582|2|1),UPSTREAM(MODIFIER||||547|AHRR|protein_coding|CODING|ENST00000512529||1),UPSTREAM(MODIFIER||||701|AHRR|protein_coding|CODING|ENST00000505113||1),UPSTREAM(MODIFIER||||719|AHRR|protein_coding|CODING|ENST00000316418||1),UPSTREAM(MODIFIER|||||PDCD6|processed_transcript|CODING|ENST00000511482||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	25:0:0:0:25,29:0,0:0,0:0,0	72:5:0:0:58,74:0,1:9,10:0,1
5	474247	.	C	A	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=CC->AC;SOMATIC;TQSS=2;TQSS_NT=2;EFF=DOWNSTREAM(MODIFIER|||||EXOC3|nonsense_mediated_decay|CODING|ENST00000515601||1),DOWNSTREAM(MODIFIER|||||EXOC3|processed_transcript|CODING|ENST00000509294||1),INTRON(MODIFIER||||825|SLC9A3|protein_coding|CODING|ENST00000514375|16|1),INTRON(MODIFIER||||834|SLC9A3|protein_coding|CODING|ENST00000264938|16|1),UPSTREAM(MODIFIER||||104|CTD-2228K2.5|protein_coding|CODING|ENST00000342584||1),UPSTREAM(MODIFIER||||95|CTD-2228K2.5|protein_coding|CODING|ENST00000510604||1),UPSTREAM(MODIFIER|||||CTD-2228K2.5|processed_transcript|CODING|ENST00000502337||1),UPSTREAM(MODIFIER|||||CTD-2228K2.5|processed_transcript|CODING|ENST00000502511||1),UPSTREAM(MODIFIER|||||CTD-2228K2.5|processed_transcript|CODING|ENST00000510714||1),UPSTREAM(MODIFIER|||||CTD-2228K2.7|antisense|NON_CODING|ENST00000431004||1),UPSTREAM(MODIFIER|||||CTD-2228K2.7|antisense|NON_CODING|ENST00000534918||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	73:1:0:0:0,0:72,80:0,0:0,0	149:2:0:0:6,7:140,150:1,2:0,0
5	474249	.	A	C	.	PASS	NT=ref;QSS=25;QSS_NT=25;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||EXOC3|nonsense_mediated_decay|CODING|ENST00000515601||1),DOWNSTREAM(MODIFIER|||||EXOC3|processed_transcript|CODING|ENST00000509294||1),INTRON(MODIFIER||||825|SLC9A3|protein_coding|CODING|ENST00000514375|16|1),INTRON(MODIFIER||||834|SLC9A3|protein_coding|CODING|ENST00000264938|16|1),UPSTREAM(MODIFIER||||104|CTD-2228K2.5|protein_coding|CODING|ENST00000342584||1),UPSTREAM(MODIFIER||||95|CTD-2228K2.5|protein_coding|CODING|ENST00000510604||1),UPSTREAM(MODIFIER|||||CTD-2228K2.5|processed_transcript|CODING|ENST00000502337||1),UPSTREAM(MODIFIER|||||CTD-2228K2.5|processed_transcript|CODING|ENST00000502511||1),UPSTREAM(MODIFIER|||||CTD-2228K2.5|processed_transcript|CODING|ENST00000510714||1),UPSTREAM(MODIFIER|||||CTD-2228K2.7|antisense|NON_CODING|ENST00000431004||1),UPSTREAM(MODIFIER|||||CTD-2228K2.7|antisense|NON_CODING|ENST00000534918||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	74:1:0:0:70,78:1,1:2,2:0,0	145:5:0:0:132,145:7,9:1,1:0,0
5	668561	rs59849604	G	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||CEP72|processed_transcript|CODING|ENST00000514507||1),INTRON(MODIFIER||||219|TPPP|protein_coding|CODING|ENST00000360578|2|1);RSPOS=668561;GMAF=0.0156;dbSNPBuildID=129;SSR=0;SAO=0;VP=050000080001040016000100;GENEINFO=TPPP:11076;WGT=1;VC=SNV;INT;VLD;KGPhase1;KGPROD;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	41:0:0:0:1,1:1,1:39,42:0,0	79:8:0:0:7,7:0,2:64,75:0,0
5	754311	rs75984181	C	T	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||371|ZDHHC11B|protein_coding|CODING|ENST00000382776|3|1),INTRON(MODIFIER||||382|ZDHHC11B|protein_coding|CODING|ENST00000508859|3|1),INTRON(MODIFIER||||412|ZDHHC11|protein_coding|CODING|ENST00000424784|13|1);RSPOS=754311;dbSNPBuildID=131;SSR=0;SAO=0;VP=050100080005000102000100;GENEINFO=ZDHHC11B:653082;WGT=1;VC=SNV;SLO;INT;ASP;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:4:0:0:0,0:25,42:0,0:0,0	44:12:0:0:1,1:24,46:1,1:6,9
5	787420	.	G	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER||||412|ZDHHC11|protein_coding|CODING|ENST00000424784|13|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:1:0:0:0,1:0,0:38,41:0,0	75:0:0:0:7,9:0,0:68,71:0,0
5	853258	rs139928524	G	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||BRD9|retained_intron|CODING|ENST00000493082|2|1),UPSTREAM(MODIFIER||||412|ZDHHC11|protein_coding|CODING|ENST00000283441||1),UPSTREAM(MODIFIER||||412|ZDHHC11|protein_coding|CODING|ENST00000424784||1),UPSTREAM(MODIFIER||||50|ZDHHC11|protein_coding|CODING|ENST00000511193||1),UPSTREAM(MODIFIER|||||ZDHHC11|processed_transcript|CODING|ENST00000508951||1),UPSTREAM(MODIFIER|||||ZDHHC11|processed_transcript|CODING|ENST00000512775||1);RSPOS=853258;GMAF=0.0027;dbSNPBuildID=134;SSR=0;SAO=0;VP=050000000005000014000100;WGT=1;VC=SNV;ASP;KGPhase1;KGPROD	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:3:0:0:0,0:0,0:33,38:0,0	66:3:0:0:5,6:1,1:57,60:0,0
5	1157425	.	G	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->CG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:1:0:0:0,0:0,1:30,31:0,0	85:1:0:0:0,0:11,12:73,73:0,0
5	1290810	.	C	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||TERT|processed_transcript|CODING|ENST00000522877||1),INTRON(MODIFIER||||1069|TERT|protein_coding|CODING|ENST00000334602|2|1),INTRON(MODIFIER||||1132|TERT|protein_coding|CODING|ENST00000310581|2|1),INTRON(MODIFIER||||807|TERT|protein_coding|CODING|ENST00000296820|2|1),INTRON(MODIFIER||||807|TERT|protein_coding|CODING|ENST00000508104|2|1),INTRON(MODIFIER|||||TERT|nonsense_mediated_decay|CODING|ENST00000460137|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	23:1:0:0:0,0:21,37:0,0:1,2	34:1:0:0:0,0:22,37:0,0:11,14
5	1514046	.	G	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||534|LPCAT1|protein_coding|CODING|ENST00000283415|1|1),INTRON(MODIFIER|||||LPCAT1|nonsense_mediated_decay|CODING|ENST00000475622|1|1),INTRON(MODIFIER|||||LPCAT1|processed_transcript|CODING|ENST00000514484|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	42:5:0:0:0,0:0,0:37,42:0,0	73:4:0:0:0,0:0,1:65,67:4,6
5	1540042	.	G	A	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||CTD-2245E15.3|lincRNA|NON_CODING|ENST00000503113||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	92:10:0:0:2,4:0,0:80,127:0,0	149:16:0:0:8,14:2,6:123,196:0,2
5	1584916	.	A	G	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||SDHAP3|processed_transcript|NON_CODING|ENST00000436493||1),INTRON(MODIFIER|||||SDHAP3|transcribed_processed_pseudogene|NON_CODING|ENST00000515467|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:4:0:0:36,40:0,0:0,0:0,0	66:1:0:0:58,59:0,0:6,7:1,1
5	1914898	.	G	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:0:0:0:0,0:0,0:35,35:0,0	88:2:0:0:0,1:0,0:80,80:6,7
5	1956544	.	T	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER|||||RP11-259O2.1|lincRNA|NON_CODING|ENST00000511693|1|1),INTRON(MODIFIER|||||RP11-259O2.1|lincRNA|NON_CODING|ENST00000513419|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	72:6:0:0:0,0:1,4:4,5:61,77	103:12:0:0:0,0:11,14:1,5:79,98
5	2528904	.	T	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:0:0:0:0,0:0,0:0,0:32,32	86:2:0:0:5,5:0,0:0,0:79,81
5	2863097	.	A	G	.	PASS	NT=ref;QSS=23;QSS_NT=23;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	45:3:0:0:42,45:0,0:0,0:0,0	91:17:0:0:61,69:2,10:10,12:1,2
5	2880118	.	T	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:0:0:0:0,0:0,0:0,0:32,32	103:1:0:0:0,0:0,0:5,5:97,98
5	3392212	.	T	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:4:0:0:0,0:0,0:0,4:28,43	55:2:0:0:0,0:6,8:3,5:44,67
5	3513755	.	T	A	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-121L11.1|lincRNA|NON_CODING|ENST00000505443|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:0:0:0:0,0:0,0:0,0:32,32	72:0:0:0:10,10:0,0:0,0:62,63
5	3774580	.	G	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:1:0:0:0,0:0,0:29,30:0,0	72:0:0:0:0,0:0,0:68,68:4,4
5	4712543	.	C	A	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-445O3.2|lincRNA|NON_CODING|ENST00000507435|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	41:1:0:0:0,0:40,41:0,0:0,0	95:0:0:0:7,7:88,88:0,0:0,0
5	4972611	.	C	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||CTD-2247C11.1|lincRNA|NON_CODING|ENST00000509057||1),INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||CTD-2247C11.2|lincRNA|NON_CODING|ENST00000511721||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:0:0:0:0,0:30,30:0,0:0,0	97:0:0:0:0,0:89,90:0,0:8,8
5	5022108	.	G	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||CTD-2247C11.1|lincRNA|NON_CODING|ENST00000509057|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:0:0:0:0,0:0,0:30,30:0,0	82:0:0:0:8,8:0,0:74,75:0,0
5	5305168	.	A	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||ADAMTS16|retained_intron|CODING|ENST00000433402||1),INTRON(MODIFIER||||1224|ADAMTS16|protein_coding|CODING|ENST00000274181|20|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	51:7:1:0:43,111:1,3:0,0:0,4	90:12:3:0:71,204:0,5:0,0:7,23
5	6001991	.	G	T	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	42:0:0:0:0,0:0,0:42,42:0,0	91:2:0:0:0,0:0,0:84,86:5,5
5	6181141	.	A	T	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=AA->AT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	28:2:0:0:24,26:2,3:0,0:0,1	65:6:0:0:41,43:6,6:0,1:12,16
5	6256927	.	C	T	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:0:0:0:0,0:38,38:0,0:0,0	80:0:0:0:0,0:75,75:0,0:5,5
5	7039516	.	G	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-122F24.1|lincRNA|NON_CODING|ENST00000512838|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:1:0:0:0,0:0,0:32,33:0,0	98:0:0:0:5,5:0,0:93,93:0,0
5	8027383	.	T	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	28:3:0:0:0,0:0,0:0,0:25,29	53:1:0:0:0,0:7,7:0,0:45,50
5	8354515	.	C	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-480D4.1|processed_transcript|NON_CODING|ENST00000501071|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:0:0:0:0,0:34,34:0,0:0,0	77:1:0:0:1,1:67,69:0,0:8,8
5	9256952	.	T	G	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1074|SEMA5A|protein_coding|CODING|ENST00000382496|5|1),INTRON(MODIFIER||||253|SEMA5A|protein_coding|CODING|ENST00000513968|4|1),INTRON(MODIFIER|||||SEMA5A|nonsense_mediated_decay|CODING|ENST00000509486|4|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	41:0:0:0:0,0:0,0:0,0:41,41	89:0:0:0:0,0:0,0:4,4:85,85
5	12080861	.	C	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	28:1:0:0:0,0:27,28:0,0:0,0	106:1:0:0:0,0:98,99:7,7:0,0
5	12116970	.	C	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:0:0:0:0,0:32,32:0,0:0,0	87:0:0:0:0,0:80,80:0,0:7,7
5	12233101	.	T	C	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:0:0:0:0,0:0,0:0,0:38,38	76:0:0:0:0,0:6,6:0,0:70,70
5	12433761	.	C	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:0:0:0:0,0:30,30:0,0:0,0	65:2:0:0:7,7:56,58:0,0:0,0
5	13071573	.	G	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	28:1:0:0:0,0:0,0:27,28:0,0	91:0:0:0:0,0:0,0:82,82:9,9
5	13414322	.	C	A	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:0:0:0:0,0:37,37:0,0:0,0	70:0:0:0:9,9:60,60:1,1:0,0
5	13760609	.	A	G	.	PASS	NT=ref;QSS=23;QSS_NT=23;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||DNAH5|processed_transcript|CODING|ENST00000504001||1),INTRON(MODIFIER||||4624|DNAH5|protein_coding|CODING|ENST00000265104|60|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:2:0:0:28,30:0,0:0,0:0,0	87:0:0:0:72,72:0,0:15,15:0,0
5	14623421	.	C	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||CTD-2165H16.3|processed_pseudogene|NON_CODING|ENST00000503819||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:0:0:0:0,0:33,33:0,0:0,0	75:1:0:0:0,0:67,68:0,0:7,7
5	14623426	.	A	G	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||CTD-2165H16.3|processed_pseudogene|NON_CODING|ENST00000503819||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:0:0:0:33,33:0,0:0,0:0,0	72:2:0:0:60,61:0,0:10,11:0,0
5	14923242	.	C	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:0:0:0:0,0:32,32:0,0:0,0	71:2:0:0:0,0:65,66:0,0:4,5
5	15688805	.	G	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||444|FBXL7|protein_coding|CODING|ENST00000510662|2|1),INTRON(MODIFIER||||479|FBXL7|protein_coding|CODING|ENST00000329673|1|1),INTRON(MODIFIER||||491|FBXL7|protein_coding|CODING|ENST00000504595|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:0:0:0:0,0:0,0:32,32:0,0	85:0:0:0:0,0:0,0:79,79:6,6
5	16769729	.	G	A	.	PASS	NT=ref;QSS=28;QSS_NT=28;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||2058|MYO10|protein_coding|CODING|ENST00000513610|9|1),INTRON(MODIFIER||||829|MYO10|protein_coding|CODING|ENST00000513882|9|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	45:0:0:0:0,0:0,0:45,45:0,0	77:0:0:0:12,12:0,0:65,65:0,0
5	17252786	.	A	C	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||227|BASP1|protein_coding|CODING|ENST00000322611|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:0:0:0:37,37:0,0:0,0:0,0	81:0:0:0:76,76:5,5:0,0:0,0
5	17382909	.	C	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||CTD-2139B15.4|lincRNA|NON_CODING|ENST00000505158|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	28:0:0:0:0,0:28,28:0,0:0,0	71:0:0:0:5,5:66,66:0,0:0,0
5	17521054	.	C	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||RP11-321E2.2|processed_pseudogene|NON_CODING|ENST00000510838||1),INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||RP11-321E2.7|processed_pseudogene|NON_CODING|ENST00000512357||1),UPSTREAM(MODIFIER|||||RP11-321E2.8|processed_pseudogene|NON_CODING|ENST00000510009||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	73:0:0:0:0,0:72,82:0,0:1,1	161:1:0:0:0,0:146,167:1,1:13,14
5	17831763	.	T	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-454P21.1|lincRNA|NON_CODING|ENST00000511596|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:2:0:0:0,0:0,0:0,0:27,29	90:0:0:0:0,0:7,7:0,0:83,83
5	18410324	.	A	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:0:0:0:34,34:0,0:0,0:0,0	77:0:0:0:70,71:0,0:0,0:7,7
5	18758402	.	C	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:0:0:0:1,1:33,33:0,0:0,0	91:0:0:0:0,0:86,86:0,0:5,5
5	18992617	.	A	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-124N3.3|lincRNA|NON_CODING|ENST00000504827|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	28:0:0:0:28,28:0,0:0,0:0,0	83:0:0:0:77,77:0,0:5,5:1,1
5	19673986	.	C	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||441|CDH18|protein_coding|CODING|ENST00000515257|3|1),INTRON(MODIFIER||||574|CDH18|protein_coding|CODING|ENST00000502796|5|1),INTRON(MODIFIER||||575|CDH18|protein_coding|CODING|ENST00000506372|5|1),INTRON(MODIFIER||||590|CDH18|protein_coding|CODING|ENST00000511273|4|1),INTRON(MODIFIER||||790|CDH18|protein_coding|CODING|ENST00000274170|5|1),INTRON(MODIFIER||||790|CDH18|protein_coding|CODING|ENST00000382275|5|1),INTRON(MODIFIER||||790|CDH18|protein_coding|CODING|ENST00000507958|7|1),INTRON(MODIFIER||||790|CDH18|protein_coding|CODING|ENST00000542864|10|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:0:0:0:0,0:29,29:0,0:0,0	68:0:0:0:0,0:61,61:7,7:0,0
5	21697664	.	A	C	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-804N13.1|antisense|NON_CODING|ENST00000522350|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:0:0:0:35,35:0,0:0,0:0,0	84:0:0:0:80,80:4,4:0,0:0,0
5	21866647	.	A	G	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||754|CDH12|protein_coding|CODING|ENST00000522262|4|1),INTRON(MODIFIER||||794|CDH12|protein_coding|CODING|ENST00000382254|6|1),INTRON(MODIFIER||||794|CDH12|protein_coding|CODING|ENST00000504376|5|1),INTRON(MODIFIER|||||CDH12|processed_transcript|CODING|ENST00000521384|1|1),INTRON(MODIFIER|||||CDH12|retained_intron|CODING|ENST00000517378|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:1:0:0:30,31:0,0:0,0:0,0	65:0:0:0:58,58:0,0:7,7:0,0
5	21998730	.	G	C	.	PASS	NT=ref;QSS=24;QSS_NT=24;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||754|CDH12|protein_coding|CODING|ENST00000522262|3|1),INTRON(MODIFIER||||794|CDH12|protein_coding|CODING|ENST00000382254|5|1),INTRON(MODIFIER||||794|CDH12|protein_coding|CODING|ENST00000504376|4|1),INTRON(MODIFIER|||||CDH12|retained_intron|CODING|ENST00000517378|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	45:0:0:0:0,0:0,0:45,45:0,0	65:1:0:0:0,0:8,8:55,56:1,1
5	22441423	.	C	G	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||794|CDH12|protein_coding|CODING|ENST00000382254|2|1),INTRON(MODIFIER||||794|CDH12|protein_coding|CODING|ENST00000504376|2|1),INTRON(MODIFIER|||||CDH12|processed_transcript|CODING|ENST00000520668|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:1:0:0:0,0:33,33:0,0:0,1	64:2:0:0:0,0:57,57:5,6:0,0
5	22497469	.	T	G	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||794|CDH12|protein_coding|CODING|ENST00000382254|2|1),INTRON(MODIFIER||||794|CDH12|protein_coding|CODING|ENST00000504376|2|1),INTRON(MODIFIER|||||CDH12|processed_transcript|CODING|ENST00000520668|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:0:0:0:0,0:0,0:0,0:31,31	58:0:0:0:0,0:0,0:6,6:52,52
5	23195161	.	T	G	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:0:0:0:0,0:0,0:0,0:29,29	73:2:0:0:0,0:0,0:9,10:62,66
5	23493290	.	G	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:1:0:0:0,0:0,0:30,32:0,0	84:1:0:0:0,0:0,0:75,75:8,9
5	24451344	.	G	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:1:0:0:0,0:0,0:33,34:0,0	62:0:0:0:5,5:0,0:57,57:0,0
5	27094383	.	T	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||131|CDH9|protein_coding|CODING|ENST00000513289|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	42:0:0:0:0,0:0,0:0,0:42,43	79:1:0:0:4,5:0,0:0,0:74,74
5	28750588	.	A	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:1:0:0:28,29:0,0:0,0:0,0	52:0:0:0:46,46:6,6:0,0:0,0
5	29712652	.	G	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:0:0:0:0,0:0,0:32,32:0,0	80:2:0:0:0,0:0,0:74,76:4,4
5	30989238	.	C	A	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	42:0:0:0:0,0:42,42:0,0:0,0	81:1:0:0:4,4:75,76:0,0:1,1
5	31797719	.	T	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||12|PDZD2|protein_coding|CODING|ENST00000513910|2|1),INTRON(MODIFIER||||2839|PDZD2|protein_coding|CODING|ENST00000438447|1|1),INTRON(MODIFIER|||||PDZD2|processed_transcript|CODING|ENST00000502824|1|1),UPSTREAM(MODIFIER||||2839|PDZD2|protein_coding|CODING|ENST00000282493||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:0:0:0:0,0:0,0:0,0:30,31	77:0:0:0:0,0:5,5:0,0:72,73
5	32040694	.	A	G	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||2839|PDZD2|protein_coding|CODING|ENST00000282493|6|1),INTRON(MODIFIER||||2839|PDZD2|protein_coding|CODING|ENST00000438447|7|1),INTRON(MODIFIER|||||PDZD2|retained_intron|CODING|ENST00000502489|6|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	28:1:0:0:26,27:1,1:0,0:0,0	63:8:0:0:45,48:1,1:9,13:0,1
5	33392350	.	C	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:0:0:0:0,0:30,30:0,0:0,0	73:1:0:0:0,0:65,67:7,7:0,0
5	34599721	.	C	A	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	43:0:0:0:1,1:42,43:0,0:0,0	72:1:0:0:6,6:65,66:0,0:0,0
5	34697002	.	A	G	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||103|RAI14|protein_coding|CODING|ENST00000514036|3|1),INTRON(MODIFIER||||106|RAI14|protein_coding|CODING|ENST00000512305|2|1),INTRON(MODIFIER||||113|RAI14|protein_coding|CODING|ENST00000504052|2|1),INTRON(MODIFIER||||124|RAI14|protein_coding|CODING|ENST00000508315|2|1),INTRON(MODIFIER||||125|RAI14|protein_coding|CODING|ENST00000513974|3|1),INTRON(MODIFIER||||125|RAI14|protein_coding|CODING|ENST00000514873|2|1),INTRON(MODIFIER||||138|RAI14|protein_coding|CODING|ENST00000514527|3|1),INTRON(MODIFIER||||149|RAI14|protein_coding|CODING|ENST00000512625|2|1),INTRON(MODIFIER||||951|RAI14|protein_coding|CODING|ENST00000512629|2|1),INTRON(MODIFIER||||972|RAI14|protein_coding|CODING|ENST00000506376|1|1),INTRON(MODIFIER||||980|RAI14|protein_coding|CODING|ENST00000265109|2|1),INTRON(MODIFIER||||980|RAI14|protein_coding|CODING|ENST00000428746|2|1),INTRON(MODIFIER||||980|RAI14|protein_coding|CODING|ENST00000503673|3|1),INTRON(MODIFIER||||983|RAI14|protein_coding|CODING|ENST00000515799|4|1),INTRON(MODIFIER|||||RAI14|nonsense_mediated_decay|CODING|ENST00000503222|2|1),INTRON(MODIFIER|||||RAI14|nonsense_mediated_decay|CODING|ENST00000508777|3|1),INTRON(MODIFIER|||||RAI14|nonsense_mediated_decay|CODING|ENST00000510319|2|1),INTRON(MODIFIER|||||RAI14|nonsense_mediated_decay|CODING|ENST00000515448|2|1),INTRON(MODIFIER|||||RAI14|processed_transcript|CODING|ENST00000507502|1|1),INTRON(MODIFIER|||||RAI14|processed_transcript|CODING|ENST00000511652|3|1),INTRON(MODIFIER|||||RAI14|retained_intron|CODING|ENST00000505185|1|1),INTRON(MODIFIER|||||RAI14|retained_intron|CODING|ENST00000514931|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:1:0:0:33,33:0,0:0,0:0,1	69:1:0:0:60,64:0,0:8,9:0,0
5	34758612	.	A	G	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||RAI14|retained_intron|CODING|ENST00000505185||1),DOWNSTREAM(MODIFIER|||||RAI14|retained_intron|CODING|ENST00000514931||1),INTRON(MODIFIER||||103|RAI14|protein_coding|CODING|ENST00000514036|4|1),INTRON(MODIFIER||||106|RAI14|protein_coding|CODING|ENST00000512305|3|1),INTRON(MODIFIER||||113|RAI14|protein_coding|CODING|ENST00000504052|3|1),INTRON(MODIFIER||||124|RAI14|protein_coding|CODING|ENST00000508315|3|1),INTRON(MODIFIER||||125|RAI14|protein_coding|CODING|ENST00000513974|4|1),INTRON(MODIFIER||||125|RAI14|protein_coding|CODING|ENST00000514873|3|1),INTRON(MODIFIER||||138|RAI14|protein_coding|CODING|ENST00000514527|4|1),INTRON(MODIFIER||||149|RAI14|protein_coding|CODING|ENST00000512625|3|1),INTRON(MODIFIER||||951|RAI14|protein_coding|CODING|ENST00000512629|3|1),INTRON(MODIFIER||||972|RAI14|protein_coding|CODING|ENST00000506376|2|1),INTRON(MODIFIER||||973|RAI14|protein_coding|CODING|ENST00000397449|2|1),INTRON(MODIFIER||||980|RAI14|protein_coding|CODING|ENST00000265109|3|1),INTRON(MODIFIER||||980|RAI14|protein_coding|CODING|ENST00000428746|3|1),INTRON(MODIFIER||||980|RAI14|protein_coding|CODING|ENST00000503673|4|1),INTRON(MODIFIER||||983|RAI14|protein_coding|CODING|ENST00000515799|5|1),INTRON(MODIFIER|||||RAI14|nonsense_mediated_decay|CODING|ENST00000503222|3|1),INTRON(MODIFIER|||||RAI14|nonsense_mediated_decay|CODING|ENST00000508777|4|1),INTRON(MODIFIER|||||RAI14|nonsense_mediated_decay|CODING|ENST00000510319|3|1),INTRON(MODIFIER|||||RAI14|nonsense_mediated_decay|CODING|ENST00000515448|4|1),INTRON(MODIFIER|||||RAI14|processed_transcript|CODING|ENST00000502736|3|1),INTRON(MODIFIER|||||RAI14|processed_transcript|CODING|ENST00000507276|2|1),INTRON(MODIFIER|||||RAI14|processed_transcript|CODING|ENST00000507502|2|1),INTRON(MODIFIER|||||RAI14|processed_transcript|CODING|ENST00000509247|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	43:0:0:0:43,43:0,0:0,0:0,0	72:0:0:0:68,68:0,0:4,4:0,0
5	37627160	.	T	G	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||387|WDR70|protein_coding|CODING|ENST00000504564|10|1),INTRON(MODIFIER||||654|WDR70|protein_coding|CODING|ENST00000265107|10|1),INTRON(MODIFIER|||||WDR70|processed_transcript|CODING|ENST00000510699|4|1),INTRON(MODIFIER|||||WDR70|retained_intron|CODING|ENST00000511906|9|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:1:0:0:0,0:0,0:0,0:36,37	73:2:0:0:0,0:0,0:7,7:64,66
5	37918778	.	A	G	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=AA->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER|||||CTD-2194L12.2|lincRNA|NON_CODING|ENST00000513673|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:0:0:0:39,39:0,0:0,0:0,0	71:1:0:0:62,64:0,0:8,8:0,0
5	40119449	.	C	G	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:2:0:0:0,1:32,33:0,0:0,0	79:1:0:0:0,0:70,71:8,8:0,0
5	40784240	.	T	C	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||207|PRKAA1|protein_coding|CODING|ENST00000296800|1|1),INTRON(MODIFIER||||559|PRKAA1|protein_coding|CODING|ENST00000397128|1|1),INTRON(MODIFIER||||574|PRKAA1|protein_coding|CODING|ENST00000354209|1|1),INTRON(MODIFIER|||||PRKAA1|retained_intron|CODING|ENST00000397006|1|1),INTRON(MODIFIER|||||PRKAA1|retained_intron|CODING|ENST00000506652|1|1),INTRON(MODIFIER|||||PRKAA1|retained_intron|CODING|ENST00000509874|1|1),INTRON(MODIFIER|||||PRKAA1|retained_intron|CODING|ENST00000511248|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:0:0:0:0,0:0,0:0,0:38,38	59:1:0:0:0,0:7,7:0,0:51,52
5	41532806	.	C	A	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	41:0:0:0:0,0:41,41:0,0:0,0	74:0:0:0:4,4:70,70:0,0:0,0
5	41754042	.	A	G	.	PASS	NT=ref;QSS=24;QSS_NT=24;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||123|OXCT1|protein_coding|CODING|ENST00000510634|3|1),INTRON(MODIFIER||||123|OXCT1|protein_coding|CODING|ENST00000512084|3|1),INTRON(MODIFIER||||334|OXCT1|protein_coding|CODING|ENST00000509987|10|1),INTRON(MODIFIER||||520|OXCT1|protein_coding|CODING|ENST00000196371|14|1),INTRON(MODIFIER|||||OXCT1|processed_transcript|CODING|ENST00000513081|3|1),INTRON(MODIFIER|||||OXCT1|processed_transcript|CODING|ENST00000514723|3|1),INTRON(MODIFIER|||||OXCT1|retained_intron|CODING|ENST00000508557|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	49:2:0:0:47,49:0,0:0,0:0,0	68:0:0:0:64,65:0,0:4,4:0,0
5	41933479	.	G	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||FBXO4|nonsense_mediated_decay|CODING|ENST00000504463||1),DOWNSTREAM(MODIFIER|||||FBXO4|retained_intron|CODING|ENST00000506496||1),INTRON(MODIFIER||||305|FBXO4|protein_coding|CODING|ENST00000509134|3|1),INTRON(MODIFIER||||307|FBXO4|protein_coding|CODING|ENST00000296812|3|1),INTRON(MODIFIER||||387|FBXO4|protein_coding|CODING|ENST00000281623|3|1),INTRON(MODIFIER|||||FBXO4|nonsense_mediated_decay|CODING|ENST00000513496|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:0:0:0:0,0:0,0:29,30:0,0	68:0:0:0:0,0:0,0:64,64:4,4
5	43218101	.	T	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||436|AC114947.1|protein_coding|CODING|ENST00000326035|1|1),INTRON(MODIFIER||||436|AC114947.1|protein_coding|CODING|ENST00000512796|1|1),INTRON(MODIFIER|||||AC114947.1|processed_transcript|CODING|ENST00000440285|1|1),INTRON(MODIFIER|||||AC114947.1|processed_transcript|CODING|ENST00000509362|1|1),INTRON(MODIFIER|||||AC114947.1|processed_transcript|CODING|ENST00000513797|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:2:0:0:0,0:0,0:0,0:30,34	70:4:0:0:6,6:1,2:0,0:59,62
5	45920809	.	C	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:5:0:0:0,4:27,108:0,0:0,0	127:24:1:0:0,3:94,293:0,1:9,15
5	46295244	rs74378756	A	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=46295244;dbSNPBuildID=131;SSR=0;SAO=0;VP=050000000001000102000100;WGT=1;VC=SNV;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:1:0:0:29,45:0,0:0,0:0,1	94:1:0:0:88,104:0,0:0,0:5,11
5	46324920	.	T	A	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	63:7:0:0:0,3:0,2:0,0:56,91	121:14:0:0:9,19:0,6:1,1:97,172
5	46324926	.	C	A	.	PASS	NT=ref;QSS=26;QSS_NT=26;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	62:3:0:0:0,3:58,90:0,0:1,2	116:5:0:0:10,18:97,164:0,0:4,6
5	46324928	.	C	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	62:3:0:0:0,4:59,85:0,0:0,4	113:7:0:0:1,4:96,161:0,0:9,16
5	46335372	.	T	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:1:0:0:0,0:0,0:0,0:29,30	74:1:0:0:0,0:0,0:7,9:66,70
5	46344223	.	G	T	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	45:2:0:0:0,0:0,0:43,63:0,1	93:3:0:0:1,1:0,0:81,109:8,16
5	46401852	.	G	T	.	PASS	NT=ref;QSS=24;QSS_NT=24;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	48:0:0:0:0,2:0,0:48,73:0,1	88:2:0:0:0,0:0,0:78,141:8,10
5	49487627	.	G	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:1:0:0:0,2:0,0:39,45:0,2	112:1:0:0:7,18:0,0:104,115:0,2
5	49504345	rs113952792	G	C	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=49504345;dbSNPBuildID=132;SSR=0;SAO=0;VP=050100000005000102000100;WGT=1;VC=SNV;SLO;ASP;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	44:9:0:0:0,2:0,4:34,85:1,1	99:15:0:0:2,5:6,22:75,176:1,2
5	49512241	.	C	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->CG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	85:15:0:0:0,0:69,161:0,7:1,2	199:42:0:0:2,4:147,375:8,21:0,5
5	49512280	.	G	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->GT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	85:19:1:0:0,1:0,3:66,168:0,6	212:47:0:0:1,9:1,2:156,403:7,30
5	50948588	.	G	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:0:0:0:0,0:0,0:35,35:0,0	93:0:0:0:0,0:0,0:87,87:6,6
5	51829942	.	C	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:0:0:0:0,0:31,31:0,0:0,0	89:1:0:0:7,7:81,83:0,0:0,0
5	52505728	.	T	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||RP11-94D20.1|processed_pseudogene|NON_CODING|ENST00000439391||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	28:1:0:0:0,0:0,0:0,0:27,28	83:1:0:0:0,0:6,6:0,0:76,77
5	54714525	rs183743566	G	A	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||SKIV2L2|retained_intron|CODING|ENST00000518955||1),INTRON(MODIFIER||||1042|SKIV2L2|protein_coding|CODING|ENST00000230640|25|1),INTRON(MODIFIER||||941|SKIV2L2|protein_coding|CODING|ENST00000545714|23|1),INTRON(MODIFIER|||||SKIV2L2|nonsense_mediated_decay|CODING|ENST00000506750|23|1);RSPOS=54714525;GMAF=0.0005;dbSNPBuildID=135;SSR=0;SAO=0;VP=050000080005000014000100;GENEINFO=SKIV2L2:23517;WGT=1;VC=SNV;INT;ASP;KGPhase1;KGPROD	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:1:0:0:0,0:0,0:29,30:0,0	82:1:0:0:12,12:0,0:69,70:0,0
5	55554113	.	C	T	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||RNA5SP185|rRNA|NON_CODING|ENST00000390963||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	46:1:0:0:0,0:45,47:0,0:0,0	81:5:0:0:0,0:72,80:0,0:4,5
5	56652908	.	G	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:0:0:0:0,0:0,0:36,38:0,0	82:2:0:0:6,8:0,0:74,79:0,0
5	56755825	.	C	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||CTD-2023N9.1|processed_transcript|NON_CODING|ENST00000506106|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:0:0:0:0,0:31,31:1,1:0,0	74:1:0:0:0,0:67,69:0,0:6,6
5	58082956	.	C	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||227|RAB3C|protein_coding|CODING|ENST00000282878|3|1),INTRON(MODIFIER|||||RAB3C|processed_transcript|CODING|ENST00000507977|4|1),INTRON(MODIFIER|||||RP11-479O16.1|antisense|NON_CODING|ENST00000509476|3|1),UPSTREAM(MODIFIER|||||RAB3C|processed_transcript|CODING|ENST00000381158||1),UPSTREAM(MODIFIER|||||RP11-479O16.1|antisense|NON_CODING|ENST00000504240||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:1:0:0:0,0:34,35:0,0:0,0	92:0:0:0:0,0:82,82:0,0:10,10
5	58715409	.	G	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||219|PDE4D|protein_coding|CODING|ENST00000502575|1|1),INTRON(MODIFIER||||421|PDE4D|protein_coding|CODING|ENST00000505453|1|1),INTRON(MODIFIER||||673|PDE4D|protein_coding|CODING|ENST00000360047|1|1),INTRON(MODIFIER||||745|PDE4D|protein_coding|CODING|ENST00000507116|1|1),INTRON(MODIFIER||||748|PDE4D|protein_coding|CODING|ENST00000502484|3|1),INTRON(MODIFIER||||748|PDE4D|protein_coding|CODING|ENST00000546160|2|1),INTRON(MODIFIER||||809|PDE4D|protein_coding|CODING|ENST00000340635|1|1),INTRON(MODIFIER|||||PDE4D|nonsense_mediated_decay|CODING|ENST00000309641|1|1),INTRON(MODIFIER|||||PDE4D|processed_transcript|CODING|ENST00000405053|1|1),INTRON(MODIFIER|||||PDE4D|retained_intron|CODING|ENST00000514231|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:1:0:0:0,0:0,0:32,32:0,0	76:0:0:0:0,0:0,0:71,71:5,5
5	58987054	.	C	A	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||219|PDE4D|protein_coding|CODING|ENST00000502575|1|1),INTRON(MODIFIER||||745|PDE4D|protein_coding|CODING|ENST00000507116|1|1),INTRON(MODIFIER||||748|PDE4D|protein_coding|CODING|ENST00000502484|3|1),INTRON(MODIFIER||||748|PDE4D|protein_coding|CODING|ENST00000546160|2|1),INTRON(MODIFIER||||809|PDE4D|protein_coding|CODING|ENST00000340635|1|1),INTRON(MODIFIER|||||PDE4D|nonsense_mediated_decay|CODING|ENST00000309641|1|1),INTRON(MODIFIER|||||PDE4D|processed_transcript|CODING|ENST00000405053|1|1),INTRON(MODIFIER|||||PDE4D|processed_transcript|CODING|ENST00000512069|1|1),INTRON(MODIFIER|||||PDE4D|retained_intron|CODING|ENST00000514231|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:1:0:0:0,0:35,36:0,0:0,0	71:1:0:0:4,4:66,69:0,0:0,0
5	59068744	.	A	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||748|PDE4D|protein_coding|CODING|ENST00000502484|3|1),INTRON(MODIFIER||||748|PDE4D|protein_coding|CODING|ENST00000546160|2|1),INTRON(MODIFIER||||809|PDE4D|protein_coding|CODING|ENST00000340635|1|1),INTRON(MODIFIER|||||PDE4D|processed_transcript|CODING|ENST00000405053|1|1),INTRON(MODIFIER|||||PDE4D|processed_transcript|CODING|ENST00000512069|1|1),INTRON(MODIFIER|||||PDE4D|retained_intron|CODING|ENST00000514231|2|1),UPSTREAM(MODIFIER||||219|PDE4D|protein_coding|CODING|ENST00000502575||1),UPSTREAM(MODIFIER||||745|PDE4D|protein_coding|CODING|ENST00000507116||1),UPSTREAM(MODIFIER|||||PDE4D|nonsense_mediated_decay|CODING|ENST00000309641||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:0:0:0:29,29:0,0:0,0:0,0	83:0:0:0:78,78:0,0:5,5:0,0
5	59241328	.	C	G	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||748|PDE4D|protein_coding|CODING|ENST00000502484|3|1),INTRON(MODIFIER||||748|PDE4D|protein_coding|CODING|ENST00000546160|2|1),INTRON(MODIFIER|||||PDE4D|processed_transcript|CODING|ENST00000512069|1|1),INTRON(MODIFIER|||||PDE4D|retained_intron|CODING|ENST00000514231|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:0:0:0:0,0:31,31:0,0:0,0	69:0:0:0:0,0:62,62:7,7:0,0
5	59910055	.	G	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||440|DEPDC1B|protein_coding|CODING|ENST00000545085|8|1),INTRON(MODIFIER||||467|DEPDC1B|protein_coding|CODING|ENST00000453022|7|1),INTRON(MODIFIER||||529|DEPDC1B|protein_coding|CODING|ENST00000265036|7|1),INTRON(MODIFIER|||||DEPDC1B|nonsense_mediated_decay|CODING|ENST00000512078|8|1),INTRON(MODIFIER|||||DEPDC1B|processed_transcript|CODING|ENST00000509006|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	28:1:0:0:0,0:0,0:27,28:0,0	83:0:0:0:0,0:7,7:76,76:0,0
5	60630572	.	C	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1215|ZSWIM6|protein_coding|CODING|ENST00000252744|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:0:0:0:0,0:29,29:0,0:0,0	80:1:0:0:0,0:73,73:6,6:0,0
5	60757960	.	C	A	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1215|ZSWIM6|protein_coding|CODING|ENST00000252744|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	41:0:0:0:0,0:41,41:0,0:0,0	78:1:0:0:8,8:68,69:1,1:0,0
5	61178316	.	C	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||CTD-2244C20.2|lincRNA|NON_CODING|ENST00000511474|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:0:0:0:0,0:28,29:1,1:0,0	61:1:0:0:0,0:56,59:0,0:4,4
5	61734631	.	C	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->AC;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER||||1015|IPO11|protein_coding|CODING|ENST00000409296|2|1),INTRON(MODIFIER||||147|IPO11|protein_coding|CODING|ENST00000514647|2|1),INTRON(MODIFIER||||161|IPO11|protein_coding|CODING|ENST00000506200|2|1),INTRON(MODIFIER||||62|IPO11|protein_coding|CODING|ENST00000505902|3|1),INTRON(MODIFIER||||975|IPO11|protein_coding|CODING|ENST00000325324|2|1),INTRON(MODIFIER|||||IPO11|nonsense_mediated_decay|CODING|ENST00000424533|2|1),INTRON(MODIFIER|||||KIF2A|processed_transcript|CODING|ENST00000509663|1|1),UPSTREAM(MODIFIER|||||U6|snRNA|NON_CODING|ENST00000362409||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	43:3:0:0:0,1:40,42:0,0:0,0	64:1:0:0:8,8:55,57:0,0:0,0
5	61999093	.	G	C	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	42:1:0:0:0,0:0,0:41,42:0,0	59:1:0:0:0,0:4,4:54,55:0,0
5	62876266	rs199519471	G	T	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=62876266;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:1:0:0:0,0:0,0:38,39:0,0	62:4:1:0:0,0:0,0:54,57:4,5
5	63530292	.	C	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||592|RNF180|protein_coding|CODING|ENST00000389100|5|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:0:0:0:0,0:30,30:0,0:0,0	70:2:0:0:7,8:61,63:0,0:0,0
5	65746330	.	C	G	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-305P14.1|lincRNA|NON_CODING|ENST00000535074|5|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	43:0:0:0:0,0:43,43:0,0:0,0	66:0:0:0:0,0:62,62:4,4:0,0
5	65963549	.	T	A	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||MAST4-IT1|sense_intronic|NON_CODING|ENST00000514241||1),INTRON(MODIFIER||||238|MAST4|protein_coding|CODING|ENST00000406039|1|1),INTRON(MODIFIER||||250|MAST4|protein_coding|CODING|ENST00000406374|1|1),INTRON(MODIFIER||||2623|MAST4|protein_coding|CODING|ENST00000403625|1|1),INTRON(MODIFIER||||2626|MAST4|protein_coding|CODING|ENST00000404260|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:0:0:0:0,0:0,0:0,0:39,39	80:1:0:0:6,6:0,0:0,1:73,73
5	66901369	.	C	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER|||||RP11-434D9.1|processed_transcript|NON_CODING|ENST00000503106|1|1),UPSTREAM(MODIFIER|||||RP11-83M16.1|processed_pseudogene|NON_CODING|ENST00000468416||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:0:0:0:0,0:36,36:0,0:0,0	87:2:0:0:0,0:81,84:0,0:4,4
5	67452654	.	A	G	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||EEF1B2P2|processed_pseudogene|NON_CODING|ENST00000519625||1),DOWNSTREAM(MODIFIER|||||U6|snRNA|NON_CODING|ENST00000516299||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:1:0:0:39,40:0,0:0,0:0,0	63:1:0:0:56,61:1,1:5,5:0,0
5	67615578	.	C	T	.	PASS	NT=ref;QSS=24;QSS_NT=24;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	42:1:0:0:0,0:41,42:0,0:0,0	77:0:0:0:0,0:65,67:1,1:11,11
5	68437315	.	C	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:0:0:0:0,0:34,35:0,0:0,0	88:1:0:0:6,9:81,81:0,0:0,0
5	68686599	.	T	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||505|RAD17|protein_coding|CODING|ENST00000358030|9|1),INTRON(MODIFIER||||505|RAD17|protein_coding|CODING|ENST00000521422|10|1),INTRON(MODIFIER||||584|RAD17|protein_coding|CODING|ENST00000282891|9|1),INTRON(MODIFIER||||670|RAD17|protein_coding|CODING|ENST00000305138|10|1),INTRON(MODIFIER||||670|RAD17|protein_coding|CODING|ENST00000345306|10|1),INTRON(MODIFIER||||670|RAD17|protein_coding|CODING|ENST00000354312|11|1),INTRON(MODIFIER||||670|RAD17|protein_coding|CODING|ENST00000354868|12|1),INTRON(MODIFIER||||670|RAD17|protein_coding|CODING|ENST00000361732|11|1),INTRON(MODIFIER||||681|RAD17|protein_coding|CODING|ENST00000380774|9|1),INTRON(MODIFIER||||681|RAD17|protein_coding|CODING|ENST00000509734|11|1),INTRON(MODIFIER|||||RAD17|nonsense_mediated_decay|CODING|ENST00000508320|3|1),INTRON(MODIFIER|||||RAD17|processed_transcript|CODING|ENST00000504177|2|1),INTRON(MODIFIER|||||RAD17|processed_transcript|CODING|ENST00000514626|6|1),UPSTREAM(MODIFIER||||184|RAD17|protein_coding|CODING|ENST00000513214||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:1:0:0:0,0:0,0:0,0:30,31	83:0:0:0:0,0:0,0:7,7:76,76
5	70906612	.	G	A	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=GG->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=DOWNSTREAM(MODIFIER|||||AC143336.1|miRNA|NON_CODING|ENST00000582542||1),INTRON(MODIFIER||||363|MCCC2|protein_coding|CODING|ENST00000509358|6|1),INTRON(MODIFIER||||525|MCCC2|protein_coding|CODING|ENST00000323375|6|1),INTRON(MODIFIER||||563|MCCC2|protein_coding|CODING|ENST00000340941|6|1),INTRON(MODIFIER|||||MCCC2|nonsense_mediated_decay|CODING|ENST00000512218|6|1),INTRON(MODIFIER|||||MCCC2|processed_transcript|CODING|ENST00000505435|1|1),INTRON(MODIFIER|||||MCCC2|processed_transcript|CODING|ENST00000505787|4|1),INTRON(MODIFIER|||||MCCC2|processed_transcript|CODING|ENST00000510895|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:1:0:0:0,0:0,0:31,32:0,0	72:3:0:0:11,11:0,0:58,61:0,0
5	72395560	.	T	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||Y_RNA|misc_RNA|NON_CODING|ENST00000363963||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:0:0:0:0,0:0,0:1,1:29,29	74:0:0:0:0,0:6,6:0,0:68,68
5	72537928	.	G	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-60A8.1|lincRNA|NON_CODING|ENST00000427584|2|1),INTRON(MODIFIER|||||RP11-60A8.1|lincRNA|NON_CODING|ENST00000513379|1|1),INTRON(MODIFIER|||||RP11-60A8.1|lincRNA|NON_CODING|ENST00000515556|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:0:0:0:0,0:0,0:33,33:0,0	76:1:0:0:0,0:5,5:69,70:1,1
5	72537952	.	T	C	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-60A8.1|lincRNA|NON_CODING|ENST00000427584|2|1),INTRON(MODIFIER|||||RP11-60A8.1|lincRNA|NON_CODING|ENST00000513379|1|1),INTRON(MODIFIER|||||RP11-60A8.1|lincRNA|NON_CODING|ENST00000515556|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:0:0:0:0,0:0,0:0,0:35,35	75:1:0:0:0,0:5,5:0,0:69,70
5	74039654	.	G	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||284|GFM2|protein_coding|CODING|ENST00000509097|9|1),INTRON(MODIFIER||||513|GFM2|protein_coding|CODING|ENST00000427854|10|1),INTRON(MODIFIER||||732|GFM2|protein_coding|CODING|ENST00000345239|10|1),INTRON(MODIFIER||||779|GFM2|protein_coding|CODING|ENST00000296805|10|1),INTRON(MODIFIER||||779|GFM2|protein_coding|CODING|ENST00000509430|11|1),INTRON(MODIFIER|||||GFM2|retained_intron|CODING|ENST00000510540|3|1),UPSTREAM(MODIFIER|||||GFM2|retained_intron|CODING|ENST00000513331||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:0:0:0:0,0:0,0:32,32:0,0	91:0:0:0:7,7:0,0:84,84:0,0
5	74433634	.	A	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1873|ANKRD31|protein_coding|CODING|ENST00000274361|16|1),INTRON(MODIFIER|||||ANKRD31|processed_transcript|CODING|ENST00000504022|5|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:0:0:0:30,30:0,0:0,0:0,0	79:1:0:0:74,75:0,0:4,4:0,0
5	74807628	.	G	A	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=SYNONYMOUS_CODING(LOW|SILENT|tcC/tcT|S14|752|COL4A3BP|protein_coding|CODING|ENST00000380494|1|1),UPSTREAM(MODIFIER||||140|POLK|protein_coding|CODING|ENST00000514296||1),UPSTREAM(MODIFIER||||598|COL4A3BP|protein_coding|CODING|ENST00000261415||1),UPSTREAM(MODIFIER||||624|COL4A3BP|protein_coding|CODING|ENST00000405807||1),UPSTREAM(MODIFIER||||672|POLK|protein_coding|CODING|ENST00000352007||1),UPSTREAM(MODIFIER|||||POLK|nonsense_mediated_decay|CODING|ENST00000503479||1),UPSTREAM(MODIFIER|||||POLK|nonsense_mediated_decay|CODING|ENST00000505774||1),UPSTREAM(MODIFIER|||||POLK|nonsense_mediated_decay|CODING|ENST00000510815||1),UPSTREAM(MODIFIER|||||POLK|processed_transcript|CODING|ENST00000506928||1),UTR_5_PRIME(MODIFIER||||870|POLK|protein_coding|CODING|ENST00000241436|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	41:2:0:0:0,0:0,0:39,41:0,0	76:1:0:0:5,5:0,0:70,71:0,0
5	76361637	.	A	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||714|AGGF1|protein_coding|CODING|ENST00000312916||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:1:0:0:30,30:0,0:0,0:1,2	82:1:0:0:74,75:0,1:7,7:0,0
5	77145239	.	A	C	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||84|TBCA|protein_coding|CODING|ENST00000522370|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:0:0:0:35,36:0,0:0,0:0,0	60:2:0:0:52,52:6,7:0,0:0,0
5	77980770	.	G	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||LHFPL2|processed_transcript|CODING|ENST00000514587|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	25:0:0:0:0,0:0,0:25,29:0,0	63:1:0:0:0,0:8,10:54,65:0,0
5	78202794	.	C	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||413|ARSB|protein_coding|CODING|ENST00000396151|5|1),INTRON(MODIFIER||||413|ARSB|protein_coding|CODING|ENST00000565165|5|1),INTRON(MODIFIER||||533|ARSB|protein_coding|CODING|ENST00000264914|4|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:0:0:0:0,0:34,34:0,0:0,0	80:0:0:0:1,1:70,70:0,0:9,9
5	78489355	.	T	G	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||CTC-422A18.1|processed_pseudogene|NON_CODING|ENST00000511420||1),INTRON(MODIFIER|||||DMGDH|processed_transcript|CODING|ENST00000518707|1|1),INTRON(MODIFIER|||||DMGDH|processed_transcript|CODING|ENST00000520388|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:0:0:0:0,0:0,0:0,0:36,36	67:2:0:0:0,1:0,0:7,7:58,59
5	79703059	.	A	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER||||1539|ZFYVE16|protein_coding|CODING|ENST00000338008||1),UPSTREAM(MODIFIER||||1539|ZFYVE16|protein_coding|CODING|ENST00000505560||1),UPSTREAM(MODIFIER||||1539|ZFYVE16|protein_coding|CODING|ENST00000510158||1),UPSTREAM(MODIFIER|||||ZFYVE16|nonsense_mediated_decay|CODING|ENST00000509562||1),UPSTREAM(MODIFIER|||||ZFYVE16|processed_transcript|CODING|ENST00000512442||1),UPSTREAM(MODIFIER|||||ZFYVE16|retained_intron|CODING|ENST00000510995||1),UPSTREAM(MODIFIER|||||ZFYVE16|retained_intron|CODING|ENST00000512558||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	44:0:0:0:44,45:0,0:0,0:0,0	83:1:0:0:76,83:0,0:5,5:1,1
5	81214312	.	C	T	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:0:0:0:0,0:40,40:0,0:0,0	71:1:0:0:0,0:66,67:0,0:4,4
5	82508769	rs112626192	T	A	.	PASS	NT=ref;QSS=30;QSS_NT=30;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||334|XRCC4|protein_coding|CODING|ENST00000282268|6|1),INTRON(MODIFIER||||334|XRCC4|protein_coding|CODING|ENST00000396027|6|1),INTRON(MODIFIER||||336|XRCC4|protein_coding|CODING|ENST00000338635|6|1),INTRON(MODIFIER||||336|XRCC4|protein_coding|CODING|ENST00000511817|6|1),INTRON(MODIFIER|||||XRCC4|processed_transcript|CODING|ENST00000509268|5|1),INTRON(MODIFIER|||||XRCC4|processed_transcript|CODING|ENST00000542685|6|1);RSPOS=82508769;dbSNPBuildID=132;SSR=0;SAO=0;VP=050100080005000102000100;GENEINFO=XRCC4:7518;WGT=1;VC=SNV;SLO;INT;ASP;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:1:0:0:0,0:0,1:0,0:30,31	72:2:0:0:16,18:0,0:0,0:54,56
5	83742995	.	G	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||CTD-2269F5.1|antisense|NON_CODING|ENST00000509406|4|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:0:0:0:0,0:0,0:31,31:0,0	86:1:0:0:0,0:0,0:80,81:5,5
5	85677332	rs193138694	A	G	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||CTC-261N6.2|lincRNA|NON_CODING|ENST00000515706||1);RSPOS=85677332;GMAF=0.0806;dbSNPBuildID=135;SSR=0;SAO=0;VP=050000000005000014000100;WGT=1;VC=SNV;ASP;KGPhase1;KGPROD	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:0:0:0:31,32:0,0:0,0:0,0	85:0:0:0:79,83:0,0:6,7:0,0
5	85910369	.	C	G	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER||||56|COX7C|protein_coding|CODING|ENST00000515763||1),UPSTREAM(MODIFIER||||63|COX7C|protein_coding|CODING|ENST00000247655||1),UPSTREAM(MODIFIER||||63|COX7C|protein_coding|CODING|ENST00000509578||1),UPSTREAM(MODIFIER|||||COX7C|processed_transcript|CODING|ENST00000505430||1),UPSTREAM(MODIFIER|||||COX7C|processed_transcript|CODING|ENST00000510447||1),UPSTREAM(MODIFIER|||||COX7C|processed_transcript|CODING|ENST00000511472||1),UPSTREAM(MODIFIER|||||COX7C|processed_transcript|CODING|ENST00000513124||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:0:0:0:0,0:36,36:0,0:0,0	63:0:0:0:0,0:58,58:5,5:0,0
5	87147549	.	C	G	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:0:0:0:0,0:32,32:0,0:0,0	71:0:0:0:0,0:64,64:7,7:0,0
5	88835990	.	G	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:0:0:0:0,0:0,0:33,33:0,0	72:0:0:0:0,0:0,0:68,68:4,4
5	90055558	.	A	G	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||6306|GPR98|protein_coding|CODING|ENST00000405460|58|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	28:1:0:0:27,28:0,0:0,0:0,0	79:5:0:0:61,61:0,1:13,17:0,0
5	90309563	.	G	T	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1967|GPR98|protein_coding|CODING|ENST00000425867|21|1),INTRON(MODIFIER||||6306|GPR98|protein_coding|CODING|ENST00000405460|85|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:2:0:0:0,0:0,0:36,39:0,0	78:0:0:0:0,0:0,0:66,68:12,13
5	91546986	.	A	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-348J24.2|lincRNA|NON_CODING|ENST00000502934|2|1),INTRON(MODIFIER|||||RP11-348J24.2|lincRNA|NON_CODING|ENST00000507217|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	22:0:0:0:22,24:0,0:0,0:0,0	93:3:0:0:76,88:0,0:14,19:0,0
5	91807135	.	T	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-133F8.2|lincRNA|NON_CODING|ENST00000512210|3|1),INTRON(MODIFIER|||||RP11-133F8.2|lincRNA|NON_CODING|ENST00000513779|2|1),INTRON(MODIFIER|||||RP11-348J24.2|lincRNA|NON_CODING|ENST00000507217|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:0:0:0:0,0:0,0:0,0:29,29	65:0:0:0:0,0:4,4:0,0:61,63
5	92937139	.	G	A	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	41:0:0:0:0,0:0,0:41,41:0,0	77:0:0:0:5,5:0,0:72,72:0,0
5	93618003	.	T	A	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1275|KIAA0825|protein_coding|CODING|ENST00000427991|18|1),INTRON(MODIFIER||||1275|KIAA0825|protein_coding|CODING|ENST00000513200|20|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:1:0:0:0,0:0,0:0,0:33,34	80:0:0:0:7,7:0,0:0,0:73,73
5	93705430	.	G	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1275|KIAA0825|protein_coding|CODING|ENST00000427991|18|1),INTRON(MODIFIER||||1275|KIAA0825|protein_coding|CODING|ENST00000513200|20|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	28:0:0:0:0,0:0,0:28,28:0,0	88:0:0:0:0,0:0,0:82,83:6,6
5	97328605	.	T	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:1:0:0:0,0:0,0:1,1:32,34	90:1:0:0:0,0:4,4:1,1:84,85
5	97462634	.	G	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||AC008834.1|lincRNA|NON_CODING|ENST00000505908|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	28:1:0:0:0,0:0,1:27,27:0,0	63:0:0:0:0,0:0,0:59,59:4,4
5	97523269	.	T	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	20:0:0:0:0,0:0,0:0,0:20,21	70:3:0:0:0,0:11,12:0,0:56,60
5	97523297	.	C	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	17:1:4:0:0,0:16,17:0,0:0,0	63:0:9:0:0,0:51,52:0,0:12,13
5	98568773	.	C	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	26:0:0:0:0,0:26,26:0,0:0,0	64:0:0:0:0,0:56,56:0,0:8,8
5	99417114	.	G	C	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->CG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	43:0:1:0:0,0:0,1:42,42:1,1	88:0:5:0:0,0:7,15:81,81:0,0
5	99569234	.	A	G	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:0:0:0:32,32:0,0:0,0:0,0	83:0:0:0:77,77:0,0:6,6:0,0
5	99608922	.	A	C	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:0:0:0:35,35:0,0:0,0:0,0	80:0:0:0:75,75:4,4:0,0:1,1
5	99674515	.	G	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:3:0:0:0,2:0,0:31,47:0,1	105:3:0:0:14,22:1,1:87,121:0,0
5	99674540	.	G	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:1:0:0:0,0:0,0:29,44:1,1	96:2:0:0:6,8:0,0:87,124:1,1
5	99933246	.	C	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:1:0:0:0,0:29,30:0,0:0,0	85:0:0:0:4,4:81,81:0,0:0,0
5	100389480	.	C	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:0:0:0:0,0:33,33:0,0:0,0	53:1:0:0:0,0:47,47:0,0:5,6
5	101688068	.	A	C	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:0:0:0:39,39:0,0:0,0:0,0	90:0:0:0:82,83:7,7:1,1:0,0
5	102857058	.	A	G	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||AC010423.1|unitary_pseudogene|NON_CODING|ENST00000412514|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:0:0:0:31,31:0,0:0,0:0,0	71:0:0:0:65,65:0,0:6,6:0,0
5	104002628	.	T	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER|||||RP11-6N13.1|lincRNA|NON_CODING|ENST00000503650|2|1),INTRON(MODIFIER|||||RP11-6N13.1|lincRNA|NON_CODING|ENST00000505824|2|1),INTRON(MODIFIER|||||RP11-6N13.1|lincRNA|NON_CODING|ENST00000506976|2|1),INTRON(MODIFIER|||||RP11-6N13.1|lincRNA|NON_CODING|ENST00000524336|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	45:4:0:0:0,0:0,2:0,0:41,53	97:7:0:0:0,0:7,17:0,0:83,103
5	105995555	.	G	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:1:0:0:0,0:0,1:31,31:0,0	84:0:0:0:7,7:0,0:77,77:0,0
5	106277419	.	G	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||CTC-254B4.1|lincRNA|NON_CODING|ENST00000505997|1|1),INTRON(MODIFIER|||||CTC-254B4.1|lincRNA|NON_CODING|ENST00000513273|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:0:0:0:0,0:0,0:30,31:0,0	77:0:0:0:6,6:0,0:71,71:0,0
5	108117621	.	T	G	.	PASS	NT=ref;QSS=26;QSS_NT=26;SGT=TT->GT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER||||326|FER|protein_coding|CODING|ENST00000536402|1|1),INTRON(MODIFIER||||822|FER|protein_coding|CODING|ENST00000281092|2|1),INTRON(MODIFIER|||||FER|nonsense_mediated_decay|CODING|ENST00000504143|2|1),INTRON(MODIFIER|||||FER|processed_transcript|CODING|ENST00000502752|2|1),INTRON(MODIFIER|||||FER|processed_transcript|CODING|ENST00000509035|1|1),INTRON(MODIFIER|||||FER|processed_transcript|CODING|ENST00000513676|1|1),UPSTREAM(MODIFIER|||||CTC-329H14.1|processed_pseudogene|NON_CODING|ENST00000506742||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:1:0:0:0,0:1,1:0,0:30,31	75:1:1:0:0,0:0,0:14,14:60,62
5	109782609	.	A	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||506|TMEM232|protein_coding|CODING|ENST00000429839|11|1),INTRON(MODIFIER||||657|TMEM232|protein_coding|CODING|ENST00000455884|12|1),INTRON(MODIFIER|||||TMEM232|nonsense_mediated_decay|CODING|ENST00000512003|9|1),INTRON(MODIFIER|||||TMEM232|processed_transcript|CODING|ENST00000515518|10|1),INTRON(MODIFIER|||||TMEM232|retained_intron|CODING|ENST00000508571|5|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	26:0:0:0:26,26:0,0:0,0:0,0	69:1:0:0:61,63:0,0:0,0:7,7
5	109800280	.	T	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||506|TMEM232|protein_coding|CODING|ENST00000429839|11|1),INTRON(MODIFIER||||657|TMEM232|protein_coding|CODING|ENST00000455884|12|1),INTRON(MODIFIER|||||TMEM232|nonsense_mediated_decay|CODING|ENST00000512003|9|1),INTRON(MODIFIER|||||TMEM232|processed_transcript|CODING|ENST00000515518|10|1),INTRON(MODIFIER|||||TMEM232|retained_intron|CODING|ENST00000508571|5|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:0:0:0:0,0:0,0:0,0:39,39	86:3:0:0:0,0:0,0:4,5:79,81
5	109947100	.	A	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||506|TMEM232|protein_coding|CODING|ENST00000429839|8|1),INTRON(MODIFIER||||657|TMEM232|protein_coding|CODING|ENST00000455884|8|1),INTRON(MODIFIER|||||TMEM232|nonsense_mediated_decay|CODING|ENST00000512003|5|1),INTRON(MODIFIER|||||TMEM232|processed_transcript|CODING|ENST00000515363|3|1),INTRON(MODIFIER|||||TMEM232|processed_transcript|CODING|ENST00000515518|7|1),INTRON(MODIFIER|||||TMEM232|retained_intron|CODING|ENST00000508571|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:1:0:0:30,31:0,0:0,0:0,0	77:0:0:0:71,71:0,0:6,6:0,0
5	112533089	.	C	A	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1019|MCC|protein_coding|CODING|ENST00000408903|3|1),INTRON(MODIFIER||||766|MCC|protein_coding|CODING|ENST00000515367|1|1),INTRON(MODIFIER||||829|MCC|protein_coding|CODING|ENST00000302475|1|1),INTRON(MODIFIER|||||MCC|processed_transcript|CODING|ENST00000506605|1|1),INTRON(MODIFIER|||||MCC|processed_transcript|CODING|ENST00000511847|1|1),INTRON(MODIFIER|||||MCC|processed_transcript|CODING|ENST00000514701|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:0:0:0:0,0:33,33:0,0:0,0	67:1:0:0:6,6:60,62:0,0:0,0
5	113072021	.	G	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:0:0:0:0,0:0,0:31,31:0,0	81:1:0:0:0,0:0,0:69,69:11,12
5	113163262	.	G	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	27:0:0:0:0,0:0,0:27,27:0,0	89:1:0:0:0,0:7,7:81,82:0,0
5	113223942	.	C	T	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:0:0:0:0,0:36,36:0,0:0,0	76:0:0:0:0,0:69,69:0,0:7,7
5	113223943	.	C	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:0:0:0:1,1:35,35:0,0:0,0	76:0:0:0:0,0:69,69:0,0:7,7
5	113889104	.	T	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-492A10.1|antisense|NON_CODING|ENST00000514115|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:0:0:0:0,0:0,0:0,0:31,31	80:1:0:0:0,0:8,8:0,0:71,72
5	113891320	.	C	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-492A10.1|antisense|NON_CODING|ENST00000514115|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:0:0:0:0,0:32,32:0,0:0,0	85:1:0:0:0,0:74,75:0,0:10,10
5	114052961	.	T	C	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:0:0:0:0,0:0,0:0,0:34,34	87:1:0:0:0,0:5,6:0,0:81,81
5	114095796	.	T	C	.	PASS	NT=ref;QSS=26;QSS_NT=26;SGT=TT->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:0:0:0:0,0:0,0:0,0:37,37	70:1:0:0:0,0:12,12:0,0:57,59
5	114156032	.	G	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:1:0:0:1,1:0,0:30,31:0,0	93:0:0:0:0,0:0,0:87,87:6,6
5	114205423	.	G	T	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:0:0:0:0,0:0,0:35,35:0,0	77:0:0:0:0,0:0,0:68,68:9,9
5	114485674	.	T	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||169|TRIM36|protein_coding|CODING|ENST00000508894|3|1),INTRON(MODIFIER||||573|TRIM36|protein_coding|CODING|ENST00000514154|1|1),INTRON(MODIFIER||||716|TRIM36|protein_coding|CODING|ENST00000513154|2|1),INTRON(MODIFIER||||728|TRIM36|protein_coding|CODING|ENST00000282369|2|1),INTRON(MODIFIER|||||TRIM36|processed_transcript|CODING|ENST00000510222|1|1),INTRON(MODIFIER|||||TRIM36|processed_transcript|CODING|ENST00000513485|1|1),INTRON(MODIFIER|||||TRIM36|processed_transcript|CODING|ENST00000515104|3|1),UPSTREAM(MODIFIER|||||TRIM36-IT1|sense_intronic|NON_CODING|ENST00000503723||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:0:0:0:0,0:0,0:0,0:32,35	89:0:0:0:0,0:7,7:0,0:82,83
5	114699711	.	C	A	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:0:0:0:0,0:35,35:0,0:0,0	87:0:0:0:8,8:79,80:0,0:0,0
5	114819055	.	A	C	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:1:0:0:37,38:0,0:0,0:0,0	89:0:0:0:84,86:5,5:0,0:0,0
5	116038435	.	G	T	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=GG->GT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:0:0:0:0,0:0,0:33,33:0,0	76:2:0:0:0,0:0,0:63,65:11,11
5	116205444	.	G	T	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:1:0:0:0,0:0,0:39,40:0,0	78:1:0:0:0,0:0,0:72,73:5,5
5	116209047	.	C	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:1:0:0:0,0:31,32:0,0:0,0	86:1:0:0:8,8:77,79:0,0:0,0
5	117102520	.	C	A	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:1:0:0:0,0:34,35:1,1:0,0	71:0:0:0:7,8:64,64:0,0:0,0
5	118458033	.	G	C	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||RP11-950K24.2|processed_pseudogene|NON_CODING|ENST00000513820||1),INTRON(MODIFIER||||3027|DMXL1|protein_coding|CODING|ENST00000311085|9|1),INTRON(MODIFIER||||3048|DMXL1|protein_coding|CODING|ENST00000539542|9|1),INTRON(MODIFIER||||588|DMXL1|protein_coding|CODING|ENST00000503802|10|1),INTRON(MODIFIER|||||DMXL1|processed_transcript|CODING|ENST00000514151|5|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:2:0:0:0,0:0,0:38,40:0,0	60:5:0:0:0,0:5,8:50,58:0,1
5	119950565	.	A	G	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||141|PRR16|protein_coding|CODING|ENST00000509923|1|1),INTRON(MODIFIER||||234|PRR16|protein_coding|CODING|ENST00000505123|1|1),INTRON(MODIFIER||||281|PRR16|protein_coding|CODING|ENST00000379551|2|1),INTRON(MODIFIER||||304|PRR16|protein_coding|CODING|ENST00000407149|1|1),UPSTREAM(MODIFIER||||234|PRR16|protein_coding|CODING|ENST00000446965||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:0:0:0:31,31:0,0:0,0:0,0	86:0:0:0:77,79:1,1:8,8:0,0
5	120625378	.	A	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:1:0:0:37,39:0,0:0,0:0,0	89:0:0:0:85,85:0,0:4,4:0,0
5	121569758	.	C	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:0:0:0:0,0:29,29:0,0:0,0	80:0:0:0:0,0:70,70:0,0:10,10
5	123289895	.	G	C	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	41:0:0:0:0,0:0,0:41,41:0,0	70:0:0:0:0,0:8,8:62,62:0,0
5	123421328	.	C	G	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:0:0:0:0,0:37,37:0,0:0,0	72:1:0:0:0,1:65,65:6,6:0,0
5	123706263	.	G	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-93O7.5|lincRNA|NON_CODING|ENST00000519703|2|1),INTRON(MODIFIER|||||RP11-93O7.5|lincRNA|NON_CODING|ENST00000520192|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:1:0:0:0,0:0,0:35,36:0,0	91:0:0:0:0,0:0,0:85,85:6,6
5	124414870	.	G	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||RP11-257I8.1|processed_pseudogene|NON_CODING|ENST00000508858||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:0:0:0:0,0:0,0:29,29:0,0	71:0:0:0:6,6:0,0:65,65:0,0
5	125202449	.	T	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||CTC-394G3.1|processed_pseudogene|NON_CODING|ENST00000511727||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	27:0:0:0:0,0:0,0:0,0:27,27	77:0:0:0:0,0:0,0:7,7:70,70
5	125373411	.	T	A	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:3:0:0:0,0:0,0:0,0:36,39	102:0:0:0:7,7:0,0:0,0:95,95
5	127925039	.	C	A	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||161|SLC27A6|protein_coding|CODING|ENST00000508645|1|1),INTRON(MODIFIER||||2912|FBN2|protein_coding|CODING|ENST00000508053|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:0:0:0:0,0:36,36:0,0:0,0	72:1:0:0:7,7:63,64:1,1:0,0
5	127960039	.	T	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||161|SLC27A6|protein_coding|CODING|ENST00000508645|1|1),INTRON(MODIFIER||||2912|FBN2|protein_coding|CODING|ENST00000508053|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	27:0:0:0:0,0:0,0:0,0:27,27	76:0:0:0:0,0:8,8:0,0:68,68
5	129026169	.	G	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1207|ADAMTS19|protein_coding|CODING|ENST00000274487|18|1),INTRON(MODIFIER|||||ADAMTS19|processed_transcript|CODING|ENST00000509467|1|1),INTRON(MODIFIER|||||CTC-575N7.1|antisense|NON_CODING|ENST00000503616|4|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	27:0:0:0:0,0:0,0:27,27:0,0	64:2:0:0:5,6:0,0:57,58:0,0
5	129549592	.	C	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:1:0:0:0,0:29,30:0,0:0,0	59:1:0:0:0,0:53,53:0,0:5,6
5	129561717	.	G	C	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:1:0:0:0,0:0,0:34,36:0,0	70:2:0:0:0,0:6,6:61,63:1,1
5	129754254	.	C	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	46:0:0:0:1,1:45,45:0,0:0,0	77:1:0:0:5,6:71,71:0,0:0,0
5	131001826	.	T	C	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1121|FNIP1|protein_coding|CODING|ENST00000307954|14|1),INTRON(MODIFIER||||1138|FNIP1|protein_coding|CODING|ENST00000307968|14|1),INTRON(MODIFIER||||1166|FNIP1|protein_coding|CODING|ENST00000510461|15|1),INTRON(MODIFIER||||1651|FNIP1|protein_coding|CODING|ENST00000514667|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:0:0:0:0,0:0,0:0,0:34,34	71:2:0:0:0,0:5,6:0,0:64,65
5	132685195	.	T	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||156|FSTL4|protein_coding|CODING|ENST00000510685|3|1),INTRON(MODIFIER||||842|FSTL4|protein_coding|CODING|ENST00000265342|4|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:1:0:0:0,0:0,0:0,0:32,35	81:1:0:0:0,0:7,8:0,0:73,76
5	134184097	.	G	A	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||155|C5orf24|protein_coding|CODING|ENST00000504727|1|1),INTRON(MODIFIER||||188|C5orf24|protein_coding|CODING|ENST00000338051|1|1),INTRON(MODIFIER||||188|C5orf24|protein_coding|CODING|ENST00000394976|1|1),INTRON(MODIFIER||||188|C5orf24|protein_coding|CODING|ENST00000435259|2|1),INTRON(MODIFIER||||6|C5orf24|protein_coding|CODING|ENST00000508791|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:0:0:0:0,0:0,0:36,37:0,0	79:2:0:0:7,9:0,0:70,71:0,0
5	136316776	.	C	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||439|SPOCK1|protein_coding|CODING|ENST00000282223|8|1),INTRON(MODIFIER||||439|SPOCK1|protein_coding|CODING|ENST00000394945|9|1),INTRON(MODIFIER|||||SPOCK1|processed_transcript|CODING|ENST00000509978|3|1),UPSTREAM(MODIFIER|||||SPOCK1|retained_intron|CODING|ENST00000515091||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:0:0:0:0,0:34,34:0,0:0,0	58:1:0:0:0,1:52,52:0,0:5,5
5	136770169	rs200514407	C	T	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||138|SPOCK1|protein_coding|CODING|ENST00000505690|1|1),INTRON(MODIFIER||||439|SPOCK1|protein_coding|CODING|ENST00000282223|1|1),INTRON(MODIFIER||||439|SPOCK1|protein_coding|CODING|ENST00000394945|2|1),INTRON(MODIFIER||||66|SPOCK1|protein_coding|CODING|ENST00000510689|1|1),INTRON(MODIFIER|||||SPOCK1|processed_transcript|CODING|ENST00000503916|2|1);RSPOS=136770169;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000080005000002000100;WGT=1;VC=SNV;INT;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:2:0:0:0,0:35,39:0,0:0,0	61:2:2:0:1,1:50,52:0,0:8,9
5	137847916	rs13155733	T	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||118|ETF1|protein_coding|CODING|ENST00000507939||1),DOWNSTREAM(MODIFIER||||207|ETF1|protein_coding|CODING|ENST00000572514||1),DOWNSTREAM(MODIFIER|||||ETF1|retained_intron|CODING|ENST00000503183||1),INTRON(MODIFIER||||404|ETF1|protein_coding|CODING|ENST00000499810|6|1),INTRON(MODIFIER||||423|ETF1|protein_coding|CODING|ENST00000503014|5|1),INTRON(MODIFIER||||437|ETF1|protein_coding|CODING|ENST00000360541|6|1),INTRON(MODIFIER|||||ETF1|nonsense_mediated_decay|CODING|ENST00000512198|5|1),INTRON(MODIFIER|||||ETF1|retained_intron|CODING|ENST00000506345|3|1);RSPOS=137847916;dbSNPBuildID=121;SSR=0;SAO=0;VP=050100080001000102000100;GENEINFO=ETF1:2107;WGT=1;VC=SNV;SLO;INT;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	17:1:1:0:0,0:1,1:0,0:15,17	45:2:0:0:9,11:0,0:0,0:34,37
5	138591435	.	T	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||SIL1|processed_transcript|CODING|ENST00000509400|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:0:0:0:0,0:0,0:0,0:32,32	68:2:0:0:0,0:5,5:0,0:61,63
5	139192666	.	G	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||771|PSD2|protein_coding|CODING|ENST00000274710|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	28:0:0:0:0,0:0,0:28,28:0,0	69:0:0:0:6,6:0,0:63,65:0,0
5	139658002	.	T	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||PFDN1|retained_intron|CODING|ENST00000507185||1),INTRON(MODIFIER||||117|PFDN1|protein_coding|CODING|ENST00000524074|3|1),INTRON(MODIFIER||||122|PFDN1|protein_coding|CODING|ENST00000261813|3|1),INTRON(MODIFIER||||35|PFDN1|protein_coding|CODING|ENST00000510217|2|1),INTRON(MODIFIER|||||CYSTM1|processed_transcript|CODING|ENST00000509789|2|1),INTRON(MODIFIER|||||PFDN1|processed_transcript|CODING|ENST00000512925|2|1),INTRON(MODIFIER|||||PFDN1|processed_transcript|CODING|ENST00000514611|1|1),INTRON(MODIFIER|||||PFDN1|retained_intron|CODING|ENST00000512707|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:0:0:0:0,0:0,0:0,0:30,30	49:1:0:0:0,0:0,0:4,6:44,44
5	141759716	.	G	A	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||AC005592.2|processed_transcript|NON_CODING|ENST00000514303||1),INTRON(MODIFIER|||||AC005592.2|processed_transcript|NON_CODING|ENST00000510311|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	43:2:0:0:0,0:0,0:41,43:0,0	74:2:0:0:4,5:0,0:68,72:0,0
5	144664343	.	T	G	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:0:0:0:0,0:0,0:0,0:40,40	80:0:0:0:0,0:0,0:7,7:73,74
5	145679574	.	A	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RBM27|processed_transcript|CODING|ENST00000506502|18|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:0:0:0:31,31:0,0:0,0:0,0	82:2:0:0:75,77:0,0:0,0:5,5
5	146241128	.	C	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||432|PPP2R2B|protein_coding|CODING|ENST00000394410|2|1),INTRON(MODIFIER||||432|PPP2R2B|protein_coding|CODING|ENST00000508545|1|1),INTRON(MODIFIER||||443|PPP2R2B|protein_coding|CODING|ENST00000356826|2|1),INTRON(MODIFIER||||443|PPP2R2B|protein_coding|CODING|ENST00000394411|2|1),INTRON(MODIFIER||||443|PPP2R2B|protein_coding|CODING|ENST00000394413|1|1),INTRON(MODIFIER||||443|PPP2R2B|protein_coding|CODING|ENST00000453001|2|1),INTRON(MODIFIER||||446|PPP2R2B|protein_coding|CODING|ENST00000336640|1|1),INTRON(MODIFIER||||449|PPP2R2B|protein_coding|CODING|ENST00000504198|2|1),INTRON(MODIFIER||||501|PPP2R2B|protein_coding|CODING|ENST00000394409|2|1),INTRON(MODIFIER||||509|PPP2R2B|protein_coding|CODING|ENST00000394414|2|1),INTRON(MODIFIER||||57|PPP2R2B|protein_coding|CODING|ENST00000508267|4|1),INTRON(MODIFIER|||||PPP2R2B|nonsense_mediated_decay|CODING|ENST00000504565|3|1),INTRON(MODIFIER|||||PPP2R2B|nonsense_mediated_decay|CODING|ENST00000512011|2|1),INTRON(MODIFIER|||||PPP2R2B|nonsense_mediated_decay|CODING|ENST00000512639|1|1),INTRON(MODIFIER|||||PPP2R2B|nonsense_mediated_decay|CODING|ENST00000515880|2|1),INTRON(MODIFIER|||||PPP2R2B|nonsense_mediated_decay|CODING|ENST00000522831|1|1),INTRON(MODIFIER|||||PPP2R2B|nonsense_mediated_decay|CODING|ENST00000528601|2|1),INTRON(MODIFIER|||||PPP2R2B|nonsense_mediated_decay|CODING|ENST00000532154|2|1),INTRON(MODIFIER|||||PPP2R2B|processed_transcript|CODING|ENST00000502876|2|1),INTRON(MODIFIER|||||PPP2R2B|processed_transcript|CODING|ENST00000509721|3|1),INTRON(MODIFIER|||||PPP2R2B|processed_transcript|CODING|ENST00000520231|1|1),INTRON(MODIFIER|||||PPP2R2B|processed_transcript|CODING|ENST00000530902|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:0:0:0:0,0:35,35:0,0:0,0	79:0:0:0:0,0:71,71:0,0:8,8
5	147813545	.	C	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||CTD-2283N19.1|antisense|NON_CODING|ENST00000520980||1),EXON(MODIFIER|||||FBXO38|retained_intron|CODING|ENST00000504447|2|1),INTRON(MODIFIER||||1113|FBXO38|protein_coding|CODING|ENST00000394370|17|1),INTRON(MODIFIER||||1188|FBXO38|protein_coding|CODING|ENST00000340253|17|1),INTRON(MODIFIER||||943|FBXO38|protein_coding|CODING|ENST00000296701|16|1),INTRON(MODIFIER||||943|FBXO38|protein_coding|CODING|ENST00000513826|15|1),INTRON(MODIFIER|||||FBXO38|processed_transcript|CODING|ENST00000505399|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:1:0:0:0,0:32,33:0,0:0,0	74:1:0:0:0,0:67,68:0,0:6,6
5	149053212	.	T	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:1:0:0:0,0:0,0:0,0:33,34	78:5:0:0:6,7:0,0:1,2:66,70
5	149053217	.	A	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:1:0:0:33,34:0,0:0,0:1,1	77:6:0:0:64,70:0,0:6,7:1,1
5	149341890	rs148827468	T	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||22|SLC26A2|protein_coding|CODING|ENST00000433184|2|1),INTRON(MODIFIER||||739|SLC26A2|protein_coding|CODING|ENST00000286298|1|1);RSPOS=149341890;GMAF=0.0009;dbSNPBuildID=134;SSR=0;SAO=0;VP=050000080005000014000100;GENEINFO=SLC26A2:1836;WGT=1;VC=SNV;INT;ASP;KGPhase1;KGPROD	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:1:0:0:0,0:0,0:0,0:29,30	77:4:0:0:6,6:0,0:0,0:67,71
5	150586180	rs139299075	C	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||296|CCDC69|protein_coding|CODING|ENST00000355417|1|1),INTRON(MODIFIER|||||CCDC69|processed_transcript|CODING|ENST00000521308|1|1),INTRON(MODIFIER|||||CCDC69|processed_transcript|CODING|ENST00000522179|1|1),UPSTREAM(MODIFIER|||||CCDC69|nonsense_mediated_decay|CODING|ENST00000522964||1),UPSTREAM(MODIFIER|||||CCDC69|retained_intron|CODING|ENST00000524344||1);RSPOS=150586180;GMAF=0.0055;dbSNPBuildID=134;SSR=0;SAO=0;VP=050000080005000014000100;GENEINFO=CCDC69:26112;WGT=1;VC=SNV;INT;ASP;KGPhase1;KGPROD	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:0:0:0:0,0:29,29:0,0:0,0	80:1:0:0:0,0:74,75:0,0:5,5
5	150830098	.	C	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||243|SLC36A1|protein_coding|CODING|ENST00000429484|1|1),INTRON(MODIFIER||||388|SLC36A1|protein_coding|CODING|ENST00000521925|1|1),INTRON(MODIFIER||||476|SLC36A1|protein_coding|CODING|ENST00000243389|1|1),INTRON(MODIFIER||||476|SLC36A1|protein_coding|CODING|ENST00000520701|1|1),INTRON(MODIFIER||||69|SLC36A1|protein_coding|CODING|ENST00000517945|1|1),INTRON(MODIFIER||||70|SLC36A1|protein_coding|CODING|ENST00000519829|1|1),INTRON(MODIFIER||||98|SLC36A1|protein_coding|CODING|ENST00000520111|1|1),INTRON(MODIFIER|||||SLC36A1|processed_transcript|CODING|ENST00000521351|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:0:0:0:1,1:37,37:0,0:0,0	79:0:0:0:7,7:69,70:1,1:2,2
5	151415426	.	G	C	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||CTB-12O2.1|lincRNA|NON_CODING|ENST00000524034|1|1),INTRON(MODIFIER|||||CTB-12O2.1|lincRNA|NON_CODING|ENST00000524295|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:0:0:0:0,0:0,0:37,38:1,1	67:0:0:0:0,0:6,6:60,60:1,1
5	156583290	rs376835	A	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER||||194|MED7|protein_coding|CODING|ENST00000524289|1|1),INTRON(MODIFIER||||72|ITK|protein_coding|CODING|ENST00000521769|1|1);RSPOS=156583290;RV;dbSNPBuildID=80;SSR=0;SAO=0;VP=050100000015000102000100;WGT=1;VC=SNV;SLO;OTH;ASP;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	22:0:13:0:22,22:0,0:0,0:0,0	32:1:36:0:25,27:0,0:0,0:6,6
5	157275630	.	A	G	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||625|CLINT1|protein_coding|CODING|ENST00000296951|1|1),INTRON(MODIFIER||||625|CLINT1|protein_coding|CODING|ENST00000411809|1|1),INTRON(MODIFIER||||625|CLINT1|protein_coding|CODING|ENST00000523094|1|1),INTRON(MODIFIER||||625|CLINT1|protein_coding|CODING|ENST00000530742|1|1),INTRON(MODIFIER||||643|CLINT1|protein_coding|CODING|ENST00000523908|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:2:0:0:28,28:2,3:0,0:0,1	65:2:0:0:51,52:2,3:10,10:0,0
5	157912583	.	C	A	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-32D16.1|lincRNA|NON_CODING|ENST00000519609|1|1),INTRON(MODIFIER|||||RP11-32D16.1|lincRNA|NON_CODING|ENST00000522704|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:0:0:0:0,0:36,36:0,0:0,0	78:1:0:0:6,7:71,71:0,0:0,0
5	159393510	.	T	G	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||520|ADRA1B|protein_coding|CODING|ENST00000306675|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	41:0:0:0:0,0:0,0:0,0:41,41	79:0:0:0:0,0:0,0:6,6:73,74
5	159749686	.	A	G	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||166|CCNJL|protein_coding|CODING|ENST00000505287|1|1),INTRON(MODIFIER|||||CCNJL|processed_transcript|CODING|ENST00000377503|1|1),INTRON(MODIFIER|||||CCNJL|processed_transcript|CODING|ENST00000518764|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:0:0:0:34,35:0,0:0,0:0,0	70:0:0:0:63,63:0,0:7,7:0,0
5	159983824	.	A	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:0:0:0:29,29:0,0:0,0:0,0	81:0:0:0:74,74:0,0:7,7:0,0
5	161041170	.	C	A	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||GABRA6|processed_transcript|CODING|ENST00000522269|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	41:0:0:0:0,0:41,41:0,0:0,0	93:1:0:0:10,10:82,83:0,0:0,0
5	161368494	.	T	C	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:0:0:0:0,0:0,0:0,0:35,35	96:0:0:0:0,0:6,6:0,0:90,90
5	162935369	.	A	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||197|MAT2B|protein_coding|CODING|ENST00000421814|1|1),INTRON(MODIFIER||||259|MAT2B|protein_coding|CODING|ENST00000518095|1|1),INTRON(MODIFIER||||323|MAT2B|protein_coding|CODING|ENST00000280969|1|1),INTRON(MODIFIER||||334|MAT2B|protein_coding|CODING|ENST00000321757|1|1),INTRON(MODIFIER||||82|MAT2B|protein_coding|CODING|ENST00000518731|1|1),INTRON(MODIFIER|||||MAT2B|nonsense_mediated_decay|CODING|ENST00000520449|1|1),INTRON(MODIFIER|||||MAT2B|retained_intron|CODING|ENST00000519719|1|1),INTRON(MODIFIER|||||MAT2B|retained_intron|CODING|ENST00000523606|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:1:0:0:28,29:0,0:0,0:0,0	85:0:0:0:75,76:1,1:9,9:0,0
5	162935377	.	G	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||197|MAT2B|protein_coding|CODING|ENST00000421814|1|1),INTRON(MODIFIER||||259|MAT2B|protein_coding|CODING|ENST00000518095|1|1),INTRON(MODIFIER||||323|MAT2B|protein_coding|CODING|ENST00000280969|1|1),INTRON(MODIFIER||||334|MAT2B|protein_coding|CODING|ENST00000321757|1|1),INTRON(MODIFIER||||82|MAT2B|protein_coding|CODING|ENST00000518731|1|1),INTRON(MODIFIER|||||MAT2B|nonsense_mediated_decay|CODING|ENST00000520449|1|1),INTRON(MODIFIER|||||MAT2B|retained_intron|CODING|ENST00000519719|1|1),INTRON(MODIFIER|||||MAT2B|retained_intron|CODING|ENST00000523606|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:0:0:0:0,0:0,0:29,29:0,0	77:0:0:0:0,0:0,0:70,71:7,7
5	163769360	.	A	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||CTC-340A15.2|antisense|NON_CODING|ENST00000517508|1|1),INTRON(MODIFIER|||||CTC-340A15.2|antisense|NON_CODING|ENST00000519570|1|1),INTRON(MODIFIER|||||CTC-340A15.2|antisense|NON_CODING|ENST00000522303|1|1),INTRON(MODIFIER|||||CTC-340A15.2|antisense|NON_CODING|ENST00000522646|1|1),INTRON(MODIFIER|||||CTC-340A15.2|antisense|NON_CODING|ENST00000522686|1|1),INTRON(MODIFIER|||||CTC-340A15.2|antisense|NON_CODING|ENST00000523648|1|1),INTRON(MODIFIER|||||CTC-340A15.2|antisense|NON_CODING|ENST00000523704|1|1),INTRON(MODIFIER|||||CTC-340A15.2|antisense|NON_CODING|ENST00000524297|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	27:1:0:0:26,27:0,0:0,0:0,0	65:0:0:0:58,58:0,0:7,7:0,0
5	164691213	.	A	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:0:0:0:31,31:0,0:0,0:0,0	67:0:0:0:59,59:8,8:0,0:0,0
5	164718087	.	G	A	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:0:0:0:0,0:0,0:34,34:0,0	80:0:0:0:6,6:0,0:74,74:0,0
5	165780128	.	A	T	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:0:0:0:35,35:0,0:0,0:0,0	72:0:0:0:63,63:0,0:0,0:9,9
5	166801014	.	G	C	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||2773|ODZ2|protein_coding|CODING|ENST00000545108|1|1),INTRON(MODIFIER||||2774|ODZ2|protein_coding|CODING|ENST00000518659|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	45:1:0:0:0,0:0,0:44,45:0,0	72:1:0:0:0,0:6,7:65,65:0,0
5	167378999	.	C	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||2535|ODZ2|protein_coding|CODING|ENST00000520394|1|1),INTRON(MODIFIER||||2598|ODZ2|protein_coding|CODING|ENST00000403607|1|1),INTRON(MODIFIER||||2653|ODZ2|protein_coding|CODING|ENST00000519204|2|1),INTRON(MODIFIER||||2773|ODZ2|protein_coding|CODING|ENST00000545108|3|1),INTRON(MODIFIER||||2774|ODZ2|protein_coding|CODING|ENST00000518659|3|1),INTRON(MODIFIER|||||CTC-353G13.1|antisense|NON_CODING|ENST00000523050|1|1),INTRON(MODIFIER|||||ODZ2|processed_transcript|CODING|ENST00000517586|2|1),INTRON(MODIFIER|||||ODZ2|processed_transcript|CODING|ENST00000518693|1|1),INTRON(MODIFIER|||||ODZ2|processed_transcript|CODING|ENST00000520393|2|1),UPSTREAM(MODIFIER|||||ODZ2|retained_intron|CODING|ENST00000522488||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:0:0:0:0,0:30,30:0,0:0,0	75:2:0:0:6,6:67,69:0,0:0,0
5	168236499	.	T	G	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1472|SLIT3|protein_coding|CODING|ENST00000404867|8|1),INTRON(MODIFIER||||1523|SLIT3|protein_coding|CODING|ENST00000519560|8|1),INTRON(MODIFIER||||1530|SLIT3|protein_coding|CODING|ENST00000332966|8|1),INTRON(MODIFIER|||||SLIT3|retained_intron|CODING|ENST00000518140|8|1),INTRON(MODIFIER|||||SLIT3|retained_intron|CODING|ENST00000521150|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:0:0:0:0,0:0,0:0,0:32,32	77:0:0:0:0,0:0,0:5,5:72,72
5	168273601	.	G	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1472|SLIT3|protein_coding|CODING|ENST00000404867|5|1),INTRON(MODIFIER||||1523|SLIT3|protein_coding|CODING|ENST00000519560|5|1),INTRON(MODIFIER||||1530|SLIT3|protein_coding|CODING|ENST00000332966|5|1),INTRON(MODIFIER|||||SLIT3|retained_intron|CODING|ENST00000518140|5|1),UPSTREAM(MODIFIER|||||SLIT3|retained_intron|CODING|ENST00000521150||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:1:0:0:0,0:0,0:33,34:0,0	52:0:0:0:4,4:0,0:48,48:0,0
5	168468423	.	G	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||CTB-174D11.1|antisense|NON_CODING|ENST00000508470||1),DOWNSTREAM(MODIFIER|||||CTB-174D11.1|antisense|NON_CODING|ENST00000511447||1),INTRON(MODIFIER||||1472|SLIT3|protein_coding|CODING|ENST00000404867|4|1),INTRON(MODIFIER||||1523|SLIT3|protein_coding|CODING|ENST00000519560|4|1),INTRON(MODIFIER||||1530|SLIT3|protein_coding|CODING|ENST00000332966|4|1),INTRON(MODIFIER|||||SLIT3|retained_intron|CODING|ENST00000518140|4|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	28:0:0:0:0,0:0,0:28,28:0,0	70:0:0:0:0,0:0,0:64,64:6,6
5	168717370	.	T	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1472|SLIT3|protein_coding|CODING|ENST00000404867|1|1),INTRON(MODIFIER||||1523|SLIT3|protein_coding|CODING|ENST00000519560|1|1),INTRON(MODIFIER||||1530|SLIT3|protein_coding|CODING|ENST00000332966|1|1),INTRON(MODIFIER|||||SLIT3|processed_transcript|CODING|ENST00000521130|1|1),INTRON(MODIFIER|||||SLIT3|retained_intron|CODING|ENST00000518140|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	41:1:0:0:0,0:0,0:0,0:40,41	76:8:0:0:0,0:0,0:7,12:61,65
5	168980785	.	G	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||U6|snRNA|NON_CODING|ENST00000383887||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:0:0:0:0,0:0,0:30,30:0,0	58:0:0:0:4,4:0,0:54,54:0,0
5	169723520	.	T	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||533|LCP2|protein_coding|CODING|ENST00000046794|1|1),INTRON(MODIFIER|||||LCP2|retained_intron|CODING|ENST00000519149|1|1),INTRON(MODIFIER|||||LCP2|retained_intron|CODING|ENST00000519594|1|1),INTRON(MODIFIER|||||LCP2|retained_intron|CODING|ENST00000522760|1|1),INTRON(MODIFIER|||||LCP2|retained_intron|CODING|ENST00000522823|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:0:0:0:0,0:0,0:0,0:30,30	79:0:0:0:5,5:0,0:0,0:74,74
5	170181155	.	A	G	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=AA->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=DOWNSTREAM(MODIFIER|||||MIR4454|antisense|NON_CODING|ENST00000503797||1),INTRON(MODIFIER|||||MIR4454|antisense|NON_CODING|ENST00000521965|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	50:6:3:0:43,49:1,1:0,1:0,1	81:13:4:0:61,82:0,0:7,10:0,0
5	170532907	.	T	G	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1088|RANBP17|protein_coding|CODING|ENST00000523189|14|1),INTRON(MODIFIER|||||RANBP17|nonsense_mediated_decay|CODING|ENST00000389118|15|1),INTRON(MODIFIER|||||RANBP17|nonsense_mediated_decay|CODING|ENST00000519256|15|1),INTRON(MODIFIER|||||RANBP17|nonsense_mediated_decay|CODING|ENST00000519949|15|1),INTRON(MODIFIER|||||RANBP17|nonsense_mediated_decay|CODING|ENST00000522066|16|1),INTRON(MODIFIER|||||RANBP17|nonsense_mediated_decay|CODING|ENST00000522533|15|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:0:0:0:0,0:0,0:0,0:31,31	71:1:0:0:0,1:0,0:6,7:64,64
5	170856665	.	C	A	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||207|FGF18|protein_coding|CODING|ENST00000274625|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:0:0:0:0,0:38,38:0,0:0,0	60:0:0:0:4,4:56,57:0,0:0,0
5	171149428	.	T	G	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:1:0:0:0,0:0,0:0,0:35,37	60:7:0:0:0,0:0,0:5,6:48,54
5	171348994	.	C	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||195|FBXW11|protein_coding|CODING|ENST00000517395|2|1),INTRON(MODIFIER||||508|FBXW11|protein_coding|CODING|ENST00000393802|1|1),INTRON(MODIFIER||||510|FBXW11|protein_coding|CODING|ENST00000425623|1|1),INTRON(MODIFIER||||529|FBXW11|protein_coding|CODING|ENST00000296933|1|1),INTRON(MODIFIER||||542|FBXW11|protein_coding|CODING|ENST00000265094|2|1),INTRON(MODIFIER||||73|FBXW11|protein_coding|CODING|ENST00000518752|1|1),INTRON(MODIFIER|||||FBXW11|nonsense_mediated_decay|CODING|ENST00000519693|2|1),INTRON(MODIFIER|||||FBXW11|nonsense_mediated_decay|CODING|ENST00000520376|3|1),INTRON(MODIFIER|||||FBXW11|nonsense_mediated_decay|CODING|ENST00000523843|2|1),INTRON(MODIFIER|||||FBXW11|processed_transcript|CODING|ENST00000522507|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:1:0:0:0,0:29,30:0,0:0,0	71:3:0:0:0,0:64,67:0,0:4,4
5	171366719	.	A	G	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||195|FBXW11|protein_coding|CODING|ENST00000517395|2|1),INTRON(MODIFIER||||508|FBXW11|protein_coding|CODING|ENST00000393802|1|1),INTRON(MODIFIER||||510|FBXW11|protein_coding|CODING|ENST00000425623|1|1),INTRON(MODIFIER||||529|FBXW11|protein_coding|CODING|ENST00000296933|1|1),INTRON(MODIFIER||||542|FBXW11|protein_coding|CODING|ENST00000265094|2|1),INTRON(MODIFIER||||73|FBXW11|protein_coding|CODING|ENST00000518752|1|1),INTRON(MODIFIER|||||FBXW11|nonsense_mediated_decay|CODING|ENST00000519693|2|1),INTRON(MODIFIER|||||FBXW11|nonsense_mediated_decay|CODING|ENST00000520376|3|1),INTRON(MODIFIER|||||FBXW11|nonsense_mediated_decay|CODING|ENST00000523843|2|1),INTRON(MODIFIER|||||FBXW11|processed_transcript|CODING|ENST00000522507|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:1:0:0:33,34:0,0:0,0:0,0	58:2:0:0:50,51:0,0:6,6:0,0
5	174461618	.	C	T	.	PASS	NT=ref;QSS=24;QSS_NT=24;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	47:0:0:0:0,0:47,47:0,0:0,0	75:5:0:0:0,0:64,71:0,0:6,6
5	174867766	.	A	C	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||446|DRD1|protein_coding|CODING|ENST00000329144||1),UTR_3_PRIME(MODIFIER||||446|DRD1|protein_coding|CODING|ENST00000393752|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:0:0:0:37,37:0,0:0,0:0,0	87:0:0:0:82,82:5,5:0,0:0,0
5	176807621	.	C	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||108|SLC34A1|protein_coding|CODING|ENST00000504577|1|1),UPSTREAM(MODIFIER||||340|SLC34A1|protein_coding|CODING|ENST00000512593||1),UPSTREAM(MODIFIER||||639|SLC34A1|protein_coding|CODING|ENST00000324417||1),UPSTREAM(MODIFIER|||||SLC34A1|retained_intron|CODING|ENST00000507685||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	27:0:0:0:0,0:27,28:0,0:0,0	71:4:0:0:0,0:61,63:0,0:6,8
5	177425806	.	T	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER||||226|PROP1|protein_coding|CODING|ENST00000308304||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:1:0:0:0,0:0,0:0,0:31,33	84:3:0:0:0,0:6,7:0,0:75,81
5	177425828	.	C	G	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER||||226|PROP1|protein_coding|CODING|ENST00000308304||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:1:0:0:0,0:34,36:0,0:0,0	77:1:0:0:3,3:68,72:5,6:0,0
5	177602368	.	G	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	49:1:0:0:1,1:0,1:47,47:0,0	87:1:0:0:10,10:0,0:76,78:0,0
5	178531610	rs200368575	G	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=178531610;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	16:0:0:0:0,1:0,0:16,17:0,0	42:0:0:0:0,0:0,0:33,34:9,11
5	179010950	.	C	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||412|RUFY1|protein_coding|CODING|ENST00000377001|7|1),INTRON(MODIFIER||||600|RUFY1|protein_coding|CODING|ENST00000393438|7|1),INTRON(MODIFIER||||600|RUFY1|protein_coding|CODING|ENST00000437570|6|1),INTRON(MODIFIER||||708|RUFY1|protein_coding|CODING|ENST00000319449|7|1),INTRON(MODIFIER|||||RUFY1|processed_transcript|CODING|ENST00000514238|4|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	28:0:0:0:0,0:28,28:0,0:0,0	60:1:0:0:0,0:52,53:0,0:7,7
5	179793473	.	G	A	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:0:0:0:0,0:0,0:40,40:0,0	69:1:0:0:7,7:0,0:61,62:0,0
5	179813700	.	T	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:3:0:0:0,0:0,1:0,0:30,32	73:1:0:0:0,0:0,0:6,6:66,68
5	180062665	.	A	T	.	PASS	NT=ref;QSS=27;QSS_NT=18;SGT=AA->AT;SOMATIC;TQSS=2;TQSS_NT=1;EFF=INTRON(MODIFIER||||1298|FLT4|protein_coding|CODING|ENST00000393347|1|1),INTRON(MODIFIER||||1306|FLT4|protein_coding|CODING|ENST00000502649|1|1),INTRON(MODIFIER||||1363|FLT4|protein_coding|CODING|ENST00000261937|1|1),INTRON(MODIFIER|||||FLT4|processed_transcript|CODING|ENST00000424276|1|1),INTRON(MODIFIER|||||FLT4|processed_transcript|CODING|ENST00000502293|1|1),INTRON(MODIFIER|||||FLT4|processed_transcript|CODING|ENST00000513527|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	87:14:0:0:67,159:0,0:5,10:1,2	90:13:0:0:64,174:0,0:2,13:11,14
5	180439543	.	T	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	28:0:0:0:0,0:0,0:0,0:28,28	74:0:0:0:7,7:0,0:0,0:67,67
5	180566633	.	T	C	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:1:0:0:0,0:0,0:0,0:35,36	67:3:0:0:0,0:5,7:0,0:59,66
6	325426	rs860101	C	T	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||184|DUSP22|protein_coding|CODING|ENST00000344450|3|1);RSPOS=325426;dbSNPBuildID=86;SSR=0;SAO=0;VP=050000080001000102000100;GENEINFO=DUSP22:56940;WGT=1;VC=SNV;INT;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:1:0:0:0,0:36,46:0,0:0,2	92:10:1:0:0,0:71,89:0,0:11,21
6	326590	.	C	T	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=CC->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER||||184|DUSP22|protein_coding|CODING|ENST00000344450|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	55:2:0:0:0,0:51,54:2,3:0,1	166:5:0:0:0,0:153,168:0,1:8,9
6	371457	.	C	T	.	PASS	NT=ref;QSS=28;QSS_NT=28;SGT=CC->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	83:8:0:0:0,0:73,132:2,11:0,5	146:21:0:0:0,1:114,267:3,21:8,20
6	380419	rs62389392	C	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=380419;dbSNPBuildID=129;SSR=16;SAO=0;VP=050000000005040102000100;WGT=1;VC=SNV;ASP;VLD;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	51:2:0:0:0,0:49,51:0,0:0,0	71:0:0:0:0,0:67,68:0,0:4,4
6	651809	.	G	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||278|HUS1B|protein_coding|CODING|ENST00000380907||1),INTRON(MODIFIER||||139|EXOC2|protein_coding|CODING|ENST00000443083|3|1),INTRON(MODIFIER||||519|EXOC2|protein_coding|CODING|ENST00000448181|1|1),INTRON(MODIFIER||||924|EXOC2|protein_coding|CODING|ENST00000230449|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:2:0:0:0,0:0,0:30,32:0,0	86:3:0:0:5,5:0,0:78,82:0,0
6	1206065	rs113485987	C	G	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=1206065;dbSNPBuildID=132;SSR=0;SAO=0;VP=050000000001000102000100;WGT=1;VC=SNV;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:1:0:0:0,0:38,47:0,0:0,2	66:4:0:0:0,0:58,73:4,4:0,0
6	2201124	.	A	C	.	PASS	NT=ref;QSS=23;QSS_NT=23;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||372|GMDS|protein_coding|CODING|ENST00000380815|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:1:0:0:29,32:0,0:0,0:0,0	49:6:0:0:34,41:9,13:0,1:0,0
6	2277653	.	T	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP1-80B9.2|processed_transcript|NON_CODING|ENST00000456943|5|1),INTRON(MODIFIER|||||RP1-80B9.2|processed_transcript|NON_CODING|ENST00000524770|4|1),INTRON(MODIFIER|||||RP1-80B9.2|processed_transcript|NON_CODING|ENST00000525811|3|1),INTRON(MODIFIER|||||RP1-80B9.2|processed_transcript|NON_CODING|ENST00000529893|3|1),INTRON(MODIFIER|||||RP1-80B9.2|processed_transcript|NON_CODING|ENST00000530346|2|1),INTRON(MODIFIER|||||RP1-80B9.2|processed_transcript|NON_CODING|ENST00000531092|2|1),INTRON(MODIFIER|||||RP1-80B9.2|processed_transcript|NON_CODING|ENST00000532124|4|1),INTRON(MODIFIER|||||RP1-80B9.2|processed_transcript|NON_CODING|ENST00000534441|3|1),INTRON(MODIFIER|||||RP1-80B9.2|processed_transcript|NON_CODING|ENST00000534468|4|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:1:0:0:0,0:0,0:0,0:28,29	66:0:0:0:0,0:7,7:0,0:59,61
6	3231654	.	G	C	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||TUBB2B|processed_transcript|CODING|ENST00000473006|1|1),UPSTREAM(MODIFIER||||124|PSMG4|protein_coding|CODING|ENST00000380306||1),UPSTREAM(MODIFIER||||445|TUBB2B|protein_coding|CODING|ENST00000259818||1),UPSTREAM(MODIFIER|||||PSMG4|processed_transcript|CODING|ENST00000416079||1),UTR_5_PRIME(MODIFIER|||||PSMG4|nonsense_mediated_decay|CODING|ENST00000509933|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:1:0:0:0,0:0,0:34,35:0,0	75:1:0:0:0,0:15,15:59,60:0,0
6	3608594	.	G	C	.	PASS	NT=ref;QSS=24;QSS_NT=24;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP1-223B1.1|lincRNA|NON_CODING|ENST00000443445|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	49:2:0:0:0,0:0,0:47,50:0,0	82:4:0:0:0,0:7,10:71,74:0,0
6	4255296	rs112083478	G	A	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=4255296;GMAF=0.12;dbSNPBuildID=132;SSR=0;SAO=0;VP=050100000001040116000100;WGT=1;VC=SNV;SLO;VLD;GNO;KGPhase1;KGPROD;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:2:0:0:0,0:0,0:35,42:1,1	73:3:0:0:4,5:3,3:63,80:0,0
6	5582018	rs112333376	G	A	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||451|FARS2|protein_coding|CODING|ENST00000274680|5|1),INTRON(MODIFIER||||451|FARS2|protein_coding|CODING|ENST00000324331|4|1);RSPOS=5582018;dbSNPBuildID=132;SSR=0;SAO=0;VP=050000080001000102000100;GENEINFO=FARS2:10667;WGT=1;VC=SNV;INT;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:0:0:0:0,0:0,0:38,39:0,0	61:0:0:0:7,8:0,0:54,57:0,0
6	5700350	.	G	A	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||451|FARS2|protein_coding|CODING|ENST00000274680|6|1),INTRON(MODIFIER||||451|FARS2|protein_coding|CODING|ENST00000324331|5|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:0:0:0:0,0:0,0:32,32:0,0	71:0:0:0:9,9:0,0:62,62:0,0
6	6073815	.	A	C	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	41:0:0:0:41,41:0,0:0,0:0,0	70:0:0:0:64,64:6,6:0,0:0,0
6	6969755	.	C	A	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:0:0:0:0,0:36,36:0,0:0,0	67:0:0:0:10,10:57,58:0,0:0,0
6	10285798	rs201921300	A	T	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=10285798;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	21:0:0:0:21,21:0,0:0,0:0,0	64:0:0:0:52,52:0,0:0,0:12,12
6	10830125	.	A	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=AA->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=DOWNSTREAM(MODIFIER|||||TMEM14B|nonsense_mediated_decay|CODING|ENST00000463100||1),DOWNSTREAM(MODIFIER|||||TMEM14B|nonsense_mediated_decay|CODING|ENST00000473166||1),DOWNSTREAM(MODIFIER|||||TMEM14B|processed_transcript|CODING|ENST00000489137||1),INTRON(MODIFIER||||288|MAK|protein_coding|CODING|ENST00000536370|2|1),INTRON(MODIFIER||||288|SYCP2L|protein_coding|CODING|ENST00000543878|3|1),INTRON(MODIFIER||||457|MAK|protein_coding|CODING|ENST00000538030|1|1),INTRON(MODIFIER||||623|MAK|protein_coding|CODING|ENST00000313243|2|1),INTRON(MODIFIER||||623|MAK|protein_coding|CODING|ENST00000354489|1|1),INTRON(MODIFIER|||||MAK|processed_transcript|CODING|ENST00000474039|2|1),INTRON(MODIFIER|||||TMEM14B|nonsense_mediated_decay|CODING|ENST00000460341|4|1),INTRON(MODIFIER|||||TMEM14B|nonsense_mediated_decay|CODING|ENST00000463448|4|1),INTRON(MODIFIER|||||TMEM14B|nonsense_mediated_decay|CODING|ENST00000480294|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:1:0:0:32,32:0,0:0,0:0,1	74:2:0:0:66,68:0,1:5,5:1,1
6	13571252	.	G	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER||||202|SIRT5|protein_coding|CODING|ENST00000397350||1),UPSTREAM(MODIFIER||||292|SIRT5|protein_coding|CODING|ENST00000359782||1),UPSTREAM(MODIFIER||||299|SIRT5|protein_coding|CODING|ENST00000379262||1),UPSTREAM(MODIFIER||||310|SIRT5|protein_coding|CODING|ENST00000379250||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:1:0:0:0,0:0,0:30,31:0,0	68:1:0:0:4,5:0,0:63,64:0,0
6	14850728	.	T	A	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-146I2.2|lincRNA|NON_CODING|ENST00000447179|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:0:0:0:0,0:0,0:0,0:35,35	67:4:0:0:7,7:0,0:1,1:55,59
6	14944293	rs113011749	C	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=14944293;dbSNPBuildID=132;SSR=0;SAO=0;VP=050100000015000102000100;WGT=1;VC=SNV;SLO;OTH;ASP;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	21:0:15:0:0,0:21,21:0,0:0,0	37:0:25:0:6,6:31,32:0,0:0,0
6	15169566	.	T	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:0:0:0:0,0:0,0:0,0:35,36	58:1:0:0:0,0:5,5:0,0:52,54
6	15169571	.	A	G	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:0:0:0:37,38:0,0:0,0:0,0	56:1:0:0:50,52:0,0:5,5:0,0
6	16322850	.	G	C	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||815|ATXN1|protein_coding|CODING|ENST00000244769|8|1),INTRON(MODIFIER||||815|ATXN1|protein_coding|CODING|ENST00000436367|7|1),INTRON(MODIFIER||||815|ATXN1|protein_coding|CODING|ENST00000450222|8|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	42:2:0:0:0,0:0,0:40,42:0,0	76:0:0:0:0,0:4,4:71,71:1,1
6	17170619	.	C	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:0:0:0:0,0:31,31:0,0:0,0	80:0:0:0:6,6:74,75:0,0:0,0
6	18084588	.	T	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:1:0:0:0,0:0,0:0,0:30,31	56:1:0:0:5,5:0,0:0,0:50,51
6	18666898	.	T	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:1:0:0:0,0:0,0:0,0:30,31	71:3:0:0:7,8:1,1:0,0:60,63
6	18736749	.	T	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:0:0:0:0,0:0,0:0,0:33,33	69:0:0:0:0,0:4,5:0,0:65,65
6	18942853	.	A	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:0:0:0:30,30:0,0:0,0:0,0	70:1:0:0:65,67:0,0:4,4:0,0
6	20141762	.	T	G	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||241|MBOAT1|protein_coding|CODING|ENST00000536798|4|1),INTRON(MODIFIER||||346|MBOAT1|protein_coding|CODING|ENST00000541730|4|1),INTRON(MODIFIER||||495|MBOAT1|protein_coding|CODING|ENST00000324607|4|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:0:0:0:0,0:0,0:0,0:36,37	60:1:0:0:0,0:0,0:6,6:53,54
6	20610465	.	G	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||488|CDKAL1|protein_coding|CODING|ENST00000378624|3|1),INTRON(MODIFIER||||579|CDKAL1|protein_coding|CODING|ENST00000274695|4|1),INTRON(MODIFIER||||579|CDKAL1|protein_coding|CODING|ENST00000378610|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:0:0:0:0,0:0,0:30,30:0,0	77:0:0:0:0,0:0,0:71,71:6,6
6	21301233	.	A	G	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:0:0:0:39,39:0,0:0,0:0,0	68:1:0:0:62,63:0,0:5,5:0,0
6	21301246	.	T	C	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:0:0:0:0,0:0,0:0,0:35,35	63:1:0:0:0,0:5,6:0,0:57,57
6	22182132	.	G	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:1:0:0:0,0:0,0:32,33:0,0	77:1:0:0:6,6:0,0:70,72:0,0
6	22332977	.	G	T	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:1:0:0:0,0:0,0:38,39:0,0	78:1:0:0:0,0:0,0:72,73:5,5
6	22595967	.	A	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||RP1-309H15.2|lincRNA|NON_CODING|ENST00000427775||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:0:0:0:35,35:1,1:0,0:0,0	98:2:0:0:86,88:1,1:0,0:9,9
6	23289373	.	T	C	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	41:0:0:0:1,1:0,0:0,0:40,40	75:0:0:0:0,0:5,5:0,0:70,70
6	24179591	.	T	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||229|DCDC2|protein_coding|CODING|ENST00000378450|1|1),INTRON(MODIFIER||||476|DCDC2|protein_coding|CODING|ENST00000378454|8|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:1:0:0:0,0:0,0:1,1:31,32	74:0:0:0:0,0:8,9:0,0:66,67
6	25498996	.	G	C	.	PASS	NT=ref;QSS=23;QSS_NT=23;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1371|LRRC16A|protein_coding|CODING|ENST00000329474|16|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	45:0:0:0:0,0:0,0:45,45:0,0	62:0:0:0:0,0:4,4:58,59:0,0
6	26254194	.	T	C	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||126|HIST1H2BH|protein_coding|CODING|ENST00000356350||1),INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER||||136|HIST1H3F|protein_coding|CODING|ENST00000446824||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:1:0:0:0,0:0,0:0,0:36,37	64:0:0:0:0,0:6,6:0,0:58,61
6	26845911	.	G	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||GUSBP2|processed_transcript|NON_CODING|ENST00000487022||1),DOWNSTREAM(MODIFIER|||||GUSBP2|transcribed_unprocessed_pseudogene|NON_CODING|ENST00000492832||1),DOWNSTREAM(MODIFIER|||||GUSBP2|unprocessed_pseudogene|NON_CODING|ENST00000455720||1),EXON(MODIFIER|||||GUSBP2|processed_transcript|NON_CODING|ENST00000463434|5|1),INTRON(MODIFIER|||||GUSBP2|processed_transcript|NON_CODING|ENST00000479900|7|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:0:0:0:0,0:0,0:31,31:0,0	63:1:0:0:7,11:0,0:55,58:0,0
6	26845936	.	A	G	.	PASS	NT=ref;QSS=28;QSS_NT=28;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||GUSBP2|processed_transcript|NON_CODING|ENST00000487022||1),DOWNSTREAM(MODIFIER|||||GUSBP2|transcribed_unprocessed_pseudogene|NON_CODING|ENST00000492832||1),DOWNSTREAM(MODIFIER|||||GUSBP2|unprocessed_pseudogene|NON_CODING|ENST00000455720||1),EXON(MODIFIER|||||GUSBP2|processed_transcript|NON_CODING|ENST00000463434|5|1),INTRON(MODIFIER|||||GUSBP2|processed_transcript|NON_CODING|ENST00000479900|7|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:0:0:0:37,37:0,0:0,0:0,0	78:2:0:0:61,65:1,1:13,17:1,1
6	26845973	.	G	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||GUSBP2|processed_transcript|NON_CODING|ENST00000487022||1),DOWNSTREAM(MODIFIER|||||GUSBP2|transcribed_unprocessed_pseudogene|NON_CODING|ENST00000492832||1),DOWNSTREAM(MODIFIER|||||GUSBP2|unprocessed_pseudogene|NON_CODING|ENST00000455720||1),EXON(MODIFIER|||||GUSBP2|processed_transcript|NON_CODING|ENST00000463434|5|1),INTRON(MODIFIER|||||GUSBP2|processed_transcript|NON_CODING|ENST00000479900|7|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	42:0:0:0:0,0:0,0:42,42:0,0	81:2:0:0:0,0:0,0:70,76:9,12
6	26846032	.	A	G	.	PASS	NT=ref;QSS=28;QSS_NT=28;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||GUSBP2|processed_transcript|NON_CODING|ENST00000487022||1),DOWNSTREAM(MODIFIER|||||GUSBP2|transcribed_unprocessed_pseudogene|NON_CODING|ENST00000492832||1),DOWNSTREAM(MODIFIER|||||GUSBP2|unprocessed_pseudogene|NON_CODING|ENST00000455720||1),EXON(MODIFIER|||||GUSBP2|processed_transcript|NON_CODING|ENST00000463434|5|1),INTRON(MODIFIER|||||GUSBP2|processed_transcript|NON_CODING|ENST00000479900|7|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	42:0:0:0:42,42:0,0:0,0:0,0	77:1:0:0:63,65:0,0:13,15:0,0
6	27316165	.	A	T	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:0:0:0:37,37:0,0:0,0:0,0	66:0:0:0:61,62:0,0:0,0:5,5
6	27800919	.	T	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||130|HIST1H2AK|protein_coding|CODING|ENST00000330180||1),INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER||||103|HIST1H4K|protein_coding|CODING|ENST00000357549||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:0:0:0:0,0:0,0:0,0:40,40	72:2:0:0:4,5:1,1:0,0:65,68
6	27852222	.	C	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	27:0:0:0:0,0:27,28:0,0:0,0	76:0:0:0:2,2:68,69:0,0:6,6
6	29618679	rs188948145	C	T	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=29618679;GMAF=0.0064;dbSNPBuildID=135;SSR=0;SAO=0;VP=050000000005000014000100;WGT=1;VC=SNV;ASP;KGPhase1;KGPROD	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:0:0:0:0,0:39,40:0,0:0,0	72:1:0:0:0,0:65,68:0,0:6,6
6	30326080	.	T	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||HCG19P|processed_pseudogene|NON_CODING|ENST00000448756||1),DOWNSTREAM(MODIFIER|||||UBQLN1P1|processed_pseudogene|NON_CODING|ENST00000441056||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:1:0:0:0,0:0,0:0,0:32,33	85:1:0:0:0,0:4,4:0,0:80,81
6	30656633	.	T	C	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=EXON(MODIFIER|||||NRM|processed_transcript|CODING|ENST00000462857|3|1),EXON(MODIFIER|||||NRM|processed_transcript|CODING|ENST00000470733|4|1),EXON(MODIFIER|||||NRM|processed_transcript|CODING|ENST00000474864|2|1),EXON(MODIFIER|||||NRM|processed_transcript|CODING|ENST00000482141|3|1),EXON(MODIFIER|||||NRM|processed_transcript|CODING|ENST00000495946|2|1),SYNONYMOUS_CODING(LOW|SILENT|ccA/ccG|P139|203|NRM|protein_coding|CODING|ENST00000376420|3|1),SYNONYMOUS_CODING(LOW|SILENT|ccA/ccG|P198|262|NRM|protein_coding|CODING|ENST00000259953|5|1),SYNONYMOUS_CODING(LOW|SILENT|ccA/ccG|P198|262|NRM|protein_coding|CODING|ENST00000376421|4|1),UPSTREAM(MODIFIER||||613|PPP1R18|protein_coding|CODING|ENST00000274853||1),UPSTREAM(MODIFIER||||613|PPP1R18|protein_coding|CODING|ENST00000399199||1),UPSTREAM(MODIFIER|||||PPP1R18|processed_transcript|CODING|ENST00000467662||1),UPSTREAM(MODIFIER|||||PPP1R18|processed_transcript|CODING|ENST00000488324||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:1:0:0:0,0:0,0:0,0:32,33	69:0:0:0:0,0:9,9:0,0:60,61
6	30685831	.	C	T	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||MDC1-AS1|antisense|NON_CODING|ENST00000442150||1),INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER||||112|MDC1|protein_coding|CODING|ENST00000422266||1),UPSTREAM(MODIFIER||||125|MDC1|protein_coding|CODING|ENST00000425072||1),UPSTREAM(MODIFIER||||161|MDC1|protein_coding|CODING|ENST00000416571||1),UPSTREAM(MODIFIER||||1825|MDC1|protein_coding|CODING|ENST00000376405||1),UPSTREAM(MODIFIER||||2089|MDC1|protein_coding|CODING|ENST00000376406||1),UPSTREAM(MODIFIER||||243|TUBB|protein_coding|CODING|ENST00000435534||1),UPSTREAM(MODIFIER||||372|TUBB|protein_coding|CODING|ENST00000330914||1),UPSTREAM(MODIFIER||||372|TUBB|protein_coding|CODING|ENST00000396384||1),UPSTREAM(MODIFIER||||426|TUBB|protein_coding|CODING|ENST00000396389||1),UPSTREAM(MODIFIER||||444|TUBB|protein_coding|CODING|ENST00000327892||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:1:0:0:0,0:39,40:0,0:0,0	74:0:0:0:0,0:68,69:0,0:6,6
6	30783757	.	T	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||LINC00243|processed_transcript|NON_CODING|ENST00000399196|1|1),INTRON(MODIFIER|||||LINC00243|processed_transcript|NON_CODING|ENST00000419357|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:0:0:0:0,0:0,0:0,0:29,34	56:1:0:0:0,0:7,8:1,2:47,48
6	31102129	.	G	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||136|PSORS1C2|protein_coding|CODING|ENST00000259845||1),DOWNSTREAM(MODIFIER|||||PSORS1C1|processed_transcript|CODING|ENST00000548049||1),INTRON(MODIFIER||||152|PSORS1C1|protein_coding|CODING|ENST00000259881|3|1),INTRON(MODIFIER|||||PSORS1C1|processed_transcript|CODING|ENST00000479581|1|1),INTRON(MODIFIER|||||PSORS1C1|retained_intron|CODING|ENST00000550838|2|1),INTRON(MODIFIER|||||PSORS1C1|retained_intron|CODING|ENST00000552747|1|1),UPSTREAM(MODIFIER||||104|PSORS1C1|protein_coding|CODING|ENST00000547221||1),UPSTREAM(MODIFIER||||89|PSORS1C1|protein_coding|CODING|ENST00000481450||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:3:0:0:0,0:0,0:32,36:0,1	64:0:0:0:0,0:5,5:59,61:0,0
6	31577105	rs80333733	T	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->AT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=DOWNSTREAM(MODIFIER|||||UQCRHP1|processed_pseudogene|NON_CODING|ENST00000424609||1),INTERGENIC(MODIFIER||||||||||1);RSPOS=31577105;dbSNPBuildID=131;SSR=0;SAO=0;VP=050100000005000102000100;WGT=1;VC=SNV;SLO;ASP;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	18:0:16:0:0,0:0,0:0,0:18,18	27:1:23:0:5,5:0,0:1,1:20,22
6	31882126	.	T	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||157|C2|protein_coding|CODING|ENST00000452202|1|1),INTRON(MODIFIER||||462|C2|protein_coding|CODING|ENST00000497706|1|1),INTRON(MODIFIER||||506|C2|protein_coding|CODING|ENST00000469372|1|1),INTRON(MODIFIER||||538|C2|protein_coding|CODING|ENST00000452323|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	21:0:0:0:0,0:0,0:0,0:21,21	36:3:0:0:0,1:0,0:5,6:28,29
6	32439558	.	C	A	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||HLA-DRB9|unprocessed_pseudogene|NON_CODING|ENST00000449413|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	44:2:0:0:0,1:42,67:0,1:0,0	71:1:0:0:5,5:65,112:0,0:0,0
6	32940582	.	A	G	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||162|BRD2|protein_coding|CODING|ENST00000496118||1),DOWNSTREAM(MODIFIER|||||BRD2-IT1|sense_intronic|NON_CODING|ENST00000415875||1),DOWNSTREAM(MODIFIER|||||BRD2|processed_transcript|CODING|ENST00000580234||1),DOWNSTREAM(MODIFIER|||||BRD2|processed_transcript|CODING|ENST00000581002||1),DOWNSTREAM(MODIFIER|||||BRD2|processed_transcript|CODING|ENST00000584808||1),EXON(MODIFIER|||||XXbac-BPG181M17.6|antisense|NON_CODING|ENST00000580587|1|1),UPSTREAM(MODIFIER||||168|HLA-DMA|protein_coding|CODING|ENST00000422832||1),UPSTREAM(MODIFIER||||754|BRD2|protein_coding|CODING|ENST00000449085||1),UPSTREAM(MODIFIER|||||BRD2|retained_intron|CODING|ENST00000463639||1),UPSTREAM(MODIFIER|||||BRD2|retained_intron|CODING|ENST00000464592||1),UPSTREAM(MODIFIER|||||HLA-DMA|processed_transcript|CODING|ENST00000464392||1),UPSTREAM(MODIFIER|||||HLA-DMA|processed_transcript|CODING|ENST00000473725||1),UTR_5_PRIME(MODIFIER||||681|BRD2|protein_coding|CODING|ENST00000443797|2|1),UTR_5_PRIME(MODIFIER||||801|BRD2|protein_coding|CODING|ENST00000374825|2|1),UTR_5_PRIME(MODIFIER||||801|BRD2|protein_coding|CODING|ENST00000374831|2|1),UTR_5_PRIME(MODIFIER||||836|BRD2|protein_coding|CODING|ENST00000395287|1|1),UTR_5_PRIME(MODIFIER||||836|BRD2|protein_coding|CODING|ENST00000395289|2|1),UTR_5_PRIME(MODIFIER|||||BRD2|nonsense_mediated_decay|CODING|ENST00000482914|2|1),UTR_5_PRIME(MODIFIER|||||BRD2|nonsense_mediated_decay|CODING|ENST00000495733|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:3:0:0:31,33:0,1:0,0:0,0	64:1:0:0:55,56:1,1:7,7:0,0
6	33331894	.	T	A	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||LYPLA2P1|processed_pseudogene|NON_CODING|ENST00000447689||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:0:0:0:0,0:0,0:0,0:37,38	80:0:0:0:7,7:0,0:0,0:73,73
6	34046437	.	G	A	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||743|GRM4|protein_coding|CODING|ENST00000544773|2|1),INTRON(MODIFIER||||772|GRM4|protein_coding|CODING|ENST00000455714|2|1),INTRON(MODIFIER||||779|GRM4|protein_coding|CODING|ENST00000535756|2|1),INTRON(MODIFIER||||796|GRM4|protein_coding|CODING|ENST00000374177|2|1),INTRON(MODIFIER||||912|GRM4|protein_coding|CODING|ENST00000374181|2|1),INTRON(MODIFIER||||912|GRM4|protein_coding|CODING|ENST00000538487|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:0:0:0:0,0:0,0:35,35:0,0	72:1:0:0:5,6:1,2:65,65:0,0
6	34161035	.	C	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	25:0:0:0:0,0:25,25:0,0:0,0	64:0:0:0:0,0:56,56:8,8:0,0
6	35239686	.	A	G	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||339|ZNF76|protein_coding|CODING|ENST00000469195|1|1),INTRON(MODIFIER||||515|ZNF76|protein_coding|CODING|ENST00000339411|1|1),INTRON(MODIFIER||||544|ZNF76|protein_coding|CODING|ENST00000440666|1|1),INTRON(MODIFIER||||570|ZNF76|protein_coding|CODING|ENST00000373953|1|1),INTRON(MODIFIER|||||ZNF76|nonsense_mediated_decay|CODING|ENST00000229405|1|1),INTRON(MODIFIER|||||ZNF76|processed_transcript|CODING|ENST00000482946|1|1),INTRON(MODIFIER|||||ZNF76|retained_intron|CODING|ENST00000460229|1|1),INTRON(MODIFIER|||||ZNF76|retained_intron|CODING|ENST00000484932|1|1),INTRON(MODIFIER|||||ZNF76|retained_intron|CODING|ENST00000486891|1|1),INTRON(MODIFIER|||||ZNF76|retained_intron|CODING|ENST00000491400|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:1:0:0:32,33:0,0:0,0:0,0	65:1:0:0:56,58:0,0:8,8:0,0
6	35239687	.	T	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||339|ZNF76|protein_coding|CODING|ENST00000469195|1|1),INTRON(MODIFIER||||515|ZNF76|protein_coding|CODING|ENST00000339411|1|1),INTRON(MODIFIER||||544|ZNF76|protein_coding|CODING|ENST00000440666|1|1),INTRON(MODIFIER||||570|ZNF76|protein_coding|CODING|ENST00000373953|1|1),INTRON(MODIFIER|||||ZNF76|nonsense_mediated_decay|CODING|ENST00000229405|1|1),INTRON(MODIFIER|||||ZNF76|processed_transcript|CODING|ENST00000482946|1|1),INTRON(MODIFIER|||||ZNF76|retained_intron|CODING|ENST00000460229|1|1),INTRON(MODIFIER|||||ZNF76|retained_intron|CODING|ENST00000484932|1|1),INTRON(MODIFIER|||||ZNF76|retained_intron|CODING|ENST00000486891|1|1),INTRON(MODIFIER|||||ZNF76|retained_intron|CODING|ENST00000491400|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:1:0:0:1,1:0,0:0,0:31,32	66:2:0:0:0,0:8,8:0,0:56,59
6	35239694	.	T	C	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||339|ZNF76|protein_coding|CODING|ENST00000469195|1|1),INTRON(MODIFIER||||515|ZNF76|protein_coding|CODING|ENST00000339411|1|1),INTRON(MODIFIER||||544|ZNF76|protein_coding|CODING|ENST00000440666|1|1),INTRON(MODIFIER||||570|ZNF76|protein_coding|CODING|ENST00000373953|1|1),INTRON(MODIFIER|||||ZNF76|nonsense_mediated_decay|CODING|ENST00000229405|1|1),INTRON(MODIFIER|||||ZNF76|processed_transcript|CODING|ENST00000482946|1|1),INTRON(MODIFIER|||||ZNF76|retained_intron|CODING|ENST00000460229|1|1),INTRON(MODIFIER|||||ZNF76|retained_intron|CODING|ENST00000484932|1|1),INTRON(MODIFIER|||||ZNF76|retained_intron|CODING|ENST00000486891|1|1),INTRON(MODIFIER|||||ZNF76|retained_intron|CODING|ENST00000491400|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:1:0:0:0,0:0,0:0,0:33,34	66:1:0:0:0,0:6,6:0,0:59,61
6	35252278	.	T	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||ZNF76|processed_transcript|CODING|ENST00000482946||1),INTRON(MODIFIER||||339|ZNF76|protein_coding|CODING|ENST00000469195|2|1),INTRON(MODIFIER||||515|ZNF76|protein_coding|CODING|ENST00000339411|2|1),INTRON(MODIFIER||||544|ZNF76|protein_coding|CODING|ENST00000440666|2|1),INTRON(MODIFIER||||570|ZNF76|protein_coding|CODING|ENST00000373953|2|1),INTRON(MODIFIER|||||ZNF76|nonsense_mediated_decay|CODING|ENST00000229405|2|1),INTRON(MODIFIER|||||ZNF76|retained_intron|CODING|ENST00000460229|2|1),INTRON(MODIFIER|||||ZNF76|retained_intron|CODING|ENST00000484932|2|1),INTRON(MODIFIER|||||ZNF76|retained_intron|CODING|ENST00000486891|2|1),INTRON(MODIFIER|||||ZNF76|retained_intron|CODING|ENST00000491400|2|1),UPSTREAM(MODIFIER|||||RP3-329A5.1|unprocessed_pseudogene|NON_CODING|ENST00000402490||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:0:0:0:0,0:0,0:0,0:38,38	76:0:0:0:0,0:7,8:0,0:69,71
6	35389375	.	T	C	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||338|PPARD|protein_coding|CODING|ENST00000540939|2|1),INTRON(MODIFIER||||343|PPARD|protein_coding|CODING|ENST00000418635|3|1),INTRON(MODIFIER||||361|PPARD|protein_coding|CODING|ENST00000337400|5|1),INTRON(MODIFIER||||361|PPARD|protein_coding|CODING|ENST00000444397|4|1),INTRON(MODIFIER||||402|PPARD|protein_coding|CODING|ENST00000448077|3|1),INTRON(MODIFIER||||441|PPARD|protein_coding|CODING|ENST00000311565|5|1),INTRON(MODIFIER||||441|PPARD|protein_coding|CODING|ENST00000360694|4|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:1:0:0:0,1:0,0:0,0:36,36	94:0:0:0:0,0:7,7:0,0:87,88
6	36636062	.	G	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||270|PI16|protein_coding|CODING|ENST00000536757|2|1),UPSTREAM(MODIFIER|||||Y_RNA|misc_RNA|NON_CODING|ENST00000516055||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:1:0:0:0,0:0,0:32,33:0,0	76:0:0:0:6,6:0,0:70,71:0,0
6	37256796	.	C	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||505|TBC1D22B|protein_coding|CODING|ENST00000373491|7|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	28:0:0:0:0,0:28,28:0,0:0,0	61:0:0:0:7,7:54,54:0,0:0,0
6	37515447	.	G	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP1-153P14.5|lincRNA|NON_CODING|ENST00000414875|2|1),UPSTREAM(MODIFIER|||||RP1-153P14.3|lincRNA|NON_CODING|ENST00000445172||1),UPSTREAM(MODIFIER|||||RP1-153P14.3|transcribed_processed_pseudogene|NON_CODING|ENST00000434901||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:1:0:0:0,0:0,0:32,33:1,1	75:0:0:0:4,4:0,0:71,71:0,0
6	38620750	.	T	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:1:0:0:0,0:0,0:0,0:29,30	86:3:0:0:0,0:6,6:0,0:77,80
6	38622708	.	C	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:3:0:0:0,0:32,35:0,0:0,0	72:2:0:0:0,0:66,70:0,0:4,4
6	39429296	.	A	G	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||653|KIF6|protein_coding|CODING|ENST00000373213|9|1),INTRON(MODIFIER||||758|KIF6|protein_coding|CODING|ENST00000538893|12|1),INTRON(MODIFIER||||797|KIF6|protein_coding|CODING|ENST00000373215|13|1),INTRON(MODIFIER||||797|KIF6|protein_coding|CODING|ENST00000373216|13|1),INTRON(MODIFIER||||814|KIF6|protein_coding|CODING|ENST00000287152|13|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:1:0:0:38,39:0,0:0,0:0,0	61:1:0:0:53,54:0,0:7,7:0,0
6	40278304	.	T	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:1:0:0:0,0:0,1:0,0:35,36	73:0:0:0:0,0:9,11:0,0:64,65
6	41175182	.	A	G	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||TREML3P|processed_transcript|NON_CODING|ENST00000564680||1),DOWNSTREAM(MODIFIER|||||TREML3P|transcribed_unprocessed_pseudogene|NON_CODING|ENST00000457327||1),DOWNSTREAM(MODIFIER|||||TREML3P|unprocessed_pseudogene|NON_CODING|ENST00000332842||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:0:0:0:31,31:1,1:0,0:0,0	70:0:0:0:64,64:0,0:6,6:0,0
6	41777527	.	G	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||14|USP49|protein_coding|CODING|ENST00000423567|3|1),INTRON(MODIFIER||||36|USP49|protein_coding|CODING|ENST00000437061|1|1),INTRON(MODIFIER||||585|USP49|protein_coding|CODING|ENST00000373010|5|1),INTRON(MODIFIER||||640|USP49|protein_coding|CODING|ENST00000297229|1|1),INTRON(MODIFIER||||640|USP49|protein_coding|CODING|ENST00000373006|3|1),INTRON(MODIFIER||||688|USP49|protein_coding|CODING|ENST00000394253|2|1),UPSTREAM(MODIFIER||||688|USP49|protein_coding|CODING|ENST00000373009||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:0:0:0:0,0:0,0:30,30:0,0	82:10:0:0:0,0:0,0:67,73:5,12
6	41777552	.	G	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||14|USP49|protein_coding|CODING|ENST00000423567|3|1),INTRON(MODIFIER||||36|USP49|protein_coding|CODING|ENST00000437061|1|1),INTRON(MODIFIER||||585|USP49|protein_coding|CODING|ENST00000373010|5|1),INTRON(MODIFIER||||640|USP49|protein_coding|CODING|ENST00000297229|1|1),INTRON(MODIFIER||||640|USP49|protein_coding|CODING|ENST00000373006|3|1),INTRON(MODIFIER||||688|USP49|protein_coding|CODING|ENST00000394253|2|1),UPSTREAM(MODIFIER||||688|USP49|protein_coding|CODING|ENST00000373009||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:0:0:0:0,0:0,0:30,30:0,0	77:7:0:0:7,11:0,0:63,68:0,0
6	41970638	.	T	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||195|CCND3|protein_coding|CODING|ENST00000510503|1|1),INTRON(MODIFIER||||211|CCND3|protein_coding|CODING|ENST00000372988|1|1),INTRON(MODIFIER||||211|CCND3|protein_coding|CODING|ENST00000511642|1|1),INTRON(MODIFIER||||42|CCND3|protein_coding|CODING|ENST00000502771|2|1),INTRON(MODIFIER||||45|CCND3|protein_coding|CODING|ENST00000514588|1|1),INTRON(MODIFIER||||96|CCND3|protein_coding|CODING|ENST00000415497|1|1),INTRON(MODIFIER||||9|CCND3|protein_coding|CODING|ENST00000508143|2|1),INTRON(MODIFIER|||||CCND3|processed_transcript|CODING|ENST00000511686|1|1),INTRON(MODIFIER|||||CCND3|processed_transcript|CODING|ENST00000513956|1|1),INTRON(MODIFIER|||||CCND3|processed_transcript|CODING|ENST00000514382|1|1),INTRON(MODIFIER|||||CCND3|retained_intron|CODING|ENST00000505672|1|1),INTRON(MODIFIER|||||CCND3|retained_intron|CODING|ENST00000505884|2|1),INTRON(MODIFIER|||||CCND3|retained_intron|CODING|ENST00000511161|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	28:0:0:0:0,0:0,0:1,1:27,29	67:4:0:0:0,1:9,11:0,0:54,58
6	44678834	.	C	T	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	50:1:0:0:0,0:48,49:0,0:1,1	104:6:0:0:0,0:84,88:0,0:14,17
6	45496012	.	A	C	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||485|RUNX2|protein_coding|CODING|ENST00000371432|5|1),INTRON(MODIFIER||||499|RUNX2|protein_coding|CODING|ENST00000371436|6|1),INTRON(MODIFIER||||507|RUNX2|protein_coding|CODING|ENST00000359524|5|1),INTRON(MODIFIER||||521|RUNX2|protein_coding|CODING|ENST00000371438|6|1),INTRON(MODIFIER||||521|RUNX2|protein_coding|CODING|ENST00000465038|7|1),INTRON(MODIFIER||||542|RUNX2|protein_coding|CODING|ENST00000576263|6|1),INTRON(MODIFIER||||567|RUNX2|protein_coding|CODING|ENST00000541979|7|1),INTRON(MODIFIER||||589|RUNX2|protein_coding|CODING|ENST00000352853|7|1),INTRON(MODIFIER|||||RUNX2|nonsense_mediated_decay|CODING|ENST00000478660|5|1),INTRON(MODIFIER|||||RUNX2|nonsense_mediated_decay|CODING|ENST00000483377|6|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:0:0:0:33,33:0,0:0,0:0,0	63:0:0:0:55,56:7,7:1,1:0,0
6	47121904	.	C	G	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:2:0:0:0,0:31,32:0,0:0,1	71:1:0:0:0,0:65,66:5,5:0,0
6	47606166	.	A	G	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=AA->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:0:0:0:39,40:0,0:0,1:0,0	51:0:0:0:46,46:0,0:5,5:0,0
6	47606180	.	G	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:0:0:0:0,1:0,0:39,39:0,1	56:1:0:0:5,5:0,0:50,50:0,1
6	47705108	.	A	G	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-550C4.6|lincRNA|NON_CODING|ENST00000446733|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:0:0:0:32,32:0,0:0,0:0,0	82:0:0:0:76,76:0,0:6,7:0,0
6	48902426	rs191753004	T	C	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=48902426;GMAF=0.0009;dbSNPBuildID=135;SSR=0;SAO=0;VP=050000000005000014000100;WGT=1;VC=SNV;ASP;KGPhase1;KGPROD	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:0:0:0:0,0:0,0:0,0:33,34	75:0:0:0:0,0:7,7:1,1:67,67
6	50191839	.	C	A	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:0:0:0:0,0:35,35:0,0:0,0	65:1:0:0:5,5:59,62:0,0:0,0
6	50638124	.	T	C	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:0:0:0:0,0:0,0:0,0:36,36	82:1:0:0:0,0:6,6:0,0:75,76
6	51311194	.	C	T	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:0:0:0:0,0:39,39:0,0:0,0	66:1:0:0:0,0:59,60:0,0:6,6
6	51384595	rs4602720	C	T	.	PASS	NT=ref;QSS=26;QSS_NT=26;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=51384595;GMAF=0.3356;dbSNPBuildID=111;SSR=0;SAO=0;VP=050100000005000116000100;WGT=1;VC=SNV;SLO;ASP;GNO;KGPhase1;KGPROD;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:0:0:0:0,0:33,33:0,0:0,0	48:1:0:0:0,0:38,38:0,0:9,10
6	52454551	.	G	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:0:0:0:0,0:0,0:30,30:0,0	76:1:0:0:7,7:0,0:68,72:0,0
6	56498579	.	C	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1143|DST|protein_coding|CODING|ENST00000518935|13|1),INTRON(MODIFIER||||1478|DST|protein_coding|CODING|ENST00000520645|24|1),INTRON(MODIFIER||||2649|DST|protein_coding|CODING|ENST00000370765|13|1),INTRON(MODIFIER||||3059|DST|protein_coding|CODING|ENST00000439203|13|1),INTRON(MODIFIER||||4200|DST|protein_coding|CODING|ENST00000312431|23|1),INTRON(MODIFIER||||5171|DST|protein_coding|CODING|ENST00000244364|13|1),INTRON(MODIFIER||||5375|DST|protein_coding|CODING|ENST00000370788|23|1),INTRON(MODIFIER||||5457|DST|protein_coding|CODING|ENST00000421834|23|1),INTRON(MODIFIER||||7246|DST|protein_coding|CODING|ENST00000446842|13|1),INTRON(MODIFIER||||7461|DST|protein_coding|CODING|ENST00000361203|23|1),INTRON(MODIFIER||||7572|DST|protein_coding|CODING|ENST00000370769|23|1),INTRON(MODIFIER||||7750|DST|protein_coding|CODING|ENST00000370754|26|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:1:0:0:0,0:33,34:0,0:0,0	83:1:0:0:0,0:78,81:0,0:4,4
6	57601539	.	C	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:0:0:0:0,0:32,32:0,0:0,0	85:1:0:0:5,6:79,79:0,0:0,0
6	58264434	.	A	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=EXON(MODIFIER|||||XXbac-BPG55C20.3|processed_pseudogene|NON_CODING|ENST00000406100|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:1:0:0:37,37:0,0:1,1:0,1	84:1:0:0:73,74:1,1:9,10:0,0
6	58559362	rs200759754	C	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=58559362;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	42:1:1:0:0,0:40,41:0,0:1,1	67:1:2:0:1,1:56,58:0,0:9,9
6	61884745	.	C	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:0:0:0:0,0:32,32:0,0:0,0	78:1:0:0:0,0:68,71:0,0:9,10
6	62226479	.	C	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:2:0:0:0,0:37,41:0,0:0,0	76:2:0:0:0,0:70,73:0,0:4,8
6	62983232	.	C	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER||||349|KHDRBS2|protein_coding|CODING|ENST00000281156|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:0:0:0:0,0:29,29:0,0:0,0	63:3:0:0:0,0:53,56:0,0:7,7
6	64362979	.	A	T	.	PASS	NT=ref;QSS=24;QSS_NT=24;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1071|PHF3|protein_coding|CODING|ENST00000506783|1|1),INTRON(MODIFIER||||2039|PHF3|protein_coding|CODING|ENST00000262043|2|1),INTRON(MODIFIER||||2039|PHF3|protein_coding|CODING|ENST00000393387|1|1),INTRON(MODIFIER||||736|PHF3|protein_coding|CODING|ENST00000509330|2|1),INTRON(MODIFIER||||812|PHF3|protein_coding|CODING|ENST00000481385|1|1),INTRON(MODIFIER||||820|PHF3|protein_coding|CODING|ENST00000494284|2|1),INTRON(MODIFIER||||859|PHF3|protein_coding|CODING|ENST00000515594|1|1),INTRON(MODIFIER|||||PHF3|nonsense_mediated_decay|CODING|ENST00000509876|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	28:1:0:0:24,25:0,0:2,2:1,1	60:7:0:0:32,33:0,0:3,3:18,24
6	66542628	.	C	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||ADH5P4|processed_pseudogene|NON_CODING|ENST00000433151||1),DOWNSTREAM(MODIFIER|||||ADH5P4|retrotransposed|NON_CODING|ENST00000444694||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:0:0:0:0,0:30,30:0,0:0,0	85:1:0:0:0,0:78,79:1,1:5,5
6	67761285	.	T	G	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:1:0:0:0,0:0,0:0,0:31,32	64:0:0:0:0,0:0,0:5,5:59,59
6	68168425	.	C	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:0:0:0:0,0:30,31:0,0:0,0	64:0:0:0:5,5:58,58:1,1:0,0
6	68773716	.	A	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||RP11-542F9.1|lincRNA|NON_CODING|ENST00000449928||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	26:0:0:0:26,26:0,0:0,0:0,0	56:0:0:0:48,48:8,8:0,0:0,0
6	69320970	.	A	G	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:1:0:0:36,36:0,2:0,0:0,0	71:0:0:0:65,65:0,0:6,7:0,0
6	73929422	.	A	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||128|KHDC1L|protein_coding|CODING|ENST00000370388||1),DOWNSTREAM(MODIFIER|||||KHDC1L|processed_transcript|CODING|ENST00000471312||1),INTRON(MODIFIER|||||KHDC1L|nonsense_mediated_decay|NON_CODING|ENST00000423730|6|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	28:0:0:0:28,28:0,0:0,0:0,0	76:0:0:0:70,70:0,0:6,6:0,0
6	74079678	.	G	A	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||RPL39P3|processed_pseudogene|NON_CODING|ENST00000424573||1),EXON(MODIFIER|||||OOEP-AS1|antisense|NON_CODING|ENST00000445350|1|1),INTRON(MODIFIER||||66|OOEP|protein_coding|CODING|ENST00000441145|1|1),INTRON(MODIFIER||||94|OOEP|protein_coding|CODING|ENST00000370363|2|1),UPSTREAM(MODIFIER||||149|OOEP|protein_coding|CODING|ENST00000370359||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	43:0:0:0:0,0:0,0:43,43:0,0	72:2:0:0:6,6:0,1:64,65:0,0
6	74176154	.	G	C	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||U6|snRNA|NON_CODING|ENST00000384296||1),INTRON(MODIFIER||||643|MTO1|protein_coding|CODING|ENST00000370305|2|1),INTRON(MODIFIER||||692|MTO1|protein_coding|CODING|ENST00000498286|2|1),INTRON(MODIFIER||||717|MTO1|protein_coding|CODING|ENST00000370300|2|1),INTRON(MODIFIER||||732|MTO1|protein_coding|CODING|ENST00000415954|2|1),INTRON(MODIFIER|||||MTO1|nonsense_mediated_decay|CODING|ENST00000415228|2|1),INTRON(MODIFIER|||||MTO1|nonsense_mediated_decay|CODING|ENST00000442897|2|1),INTRON(MODIFIER|||||MTO1|nonsense_mediated_decay|CODING|ENST00000521032|2|1),INTRON(MODIFIER|||||MTO1|nonsense_mediated_decay|CODING|ENST00000522205|2|1),INTRON(MODIFIER|||||MTO1|processed_transcript|CODING|ENST00000518210|2|1),INTRON(MODIFIER|||||MTO1|retained_intron|CODING|ENST00000370308|2|1),INTRON(MODIFIER|||||MTO1|retained_intron|CODING|ENST00000462039|2|1),INTRON(MODIFIER|||||MTO1|retained_intron|CODING|ENST00000485082|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:0:0:0:0,0:0,0:39,39:0,0	67:0:0:0:0,0:4,4:63,63:0,0
6	74717990	.	G	A	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||RP11-374N7.1|processed_pseudogene|NON_CODING|ENST00000406296||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:0:0:0:0,0:0,0:34,37:0,0	77:1:0:0:9,9:0,0:67,72:0,0
6	75714370	.	A	T	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:0:0:0:39,40:1,1:0,0:0,0	72:0:0:0:66,66:0,0:0,0:6,6
6	78242892	.	C	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:0:0:0:0,0:28,28:1,1:0,0	71:0:0:0:6,7:65,65:0,0:0,0
6	78282358	.	C	T	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:1:0:0:0,0:38,38:0,0:0,0	77:1:0:0:0,0:71,71:0,0:5,6
6	78646773	.	G	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||SNORD112|snoRNA|NON_CODING|ENST00000517123||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:0:0:0:0,0:0,0:32,32:0,0	84:0:0:0:0,0:0,0:79,79:5,5
6	80262197	.	A	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||RP11-342L8.2|processed_pseudogene|NON_CODING|ENST00000571144||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:0:0:0:29,29:0,0:0,0:1,1	75:2:0:0:69,71:0,0:4,4:0,0
6	81395659	.	C	A	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:1:0:0:0,0:35,37:0,0:0,0	81:0:0:0:7,7:74,76:0,0:0,0
6	81619983	.	T	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	28:0:0:0:0,0:0,0:0,0:28,28	63:1:0:0:0,0:7,7:0,0:55,56
6	81759000	.	C	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:0:0:0:0,0:30,30:0,0:0,0	74:0:0:0:0,0:68,68:0,0:6,6
6	82256970	.	C	A	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	45:1:0:0:0,0:43,44:1,1:0,0	83:0:0:0:7,7:76,76:0,0:0,0
6	83249615	.	G	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	27:0:0:0:0,0:0,0:27,27:0,0	66:1:0:0:6,6:0,0:59,62:0,0
6	83721572	.	T	C	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||389|UBE3D|protein_coding|CODING|ENST00000369747|8|1),INTRON(MODIFIER|||||UBE3D|nonsense_mediated_decay|CODING|ENST00000237186|8|1),INTRON(MODIFIER|||||UBE3D|nonsense_mediated_decay|CODING|ENST00000430071|9|1),INTRON(MODIFIER|||||UBE3D|nonsense_mediated_decay|CODING|ENST00000509102|8|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	42:0:0:0:0,0:1,1:0,0:41,41	68:0:0:0:0,0:8,8:0,0:60,60
6	84283123	.	C	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||580|SNAP91|protein_coding|CODING|ENST00000521931||1),DOWNSTREAM(MODIFIER|||||SNAP91|processed_transcript|CODING|ENST00000519133||1),INTRON(MODIFIER||||222|SNAP91|protein_coding|CODING|ENST00000523448|5|1),INTRON(MODIFIER||||600|SNAP91|protein_coding|CODING|ENST00000437520|16|1),INTRON(MODIFIER||||600|SNAP91|protein_coding|CODING|ENST00000520213|16|1),INTRON(MODIFIER||||877|SNAP91|protein_coding|CODING|ENST00000520302|24|1),INTRON(MODIFIER||||902|SNAP91|protein_coding|CODING|ENST00000195649|26|1),INTRON(MODIFIER||||902|SNAP91|protein_coding|CODING|ENST00000521485|26|1),INTRON(MODIFIER||||907|SNAP91|protein_coding|CODING|ENST00000369694|26|1),INTRON(MODIFIER||||907|SNAP91|protein_coding|CODING|ENST00000428679|26|1),INTRON(MODIFIER||||907|SNAP91|protein_coding|CODING|ENST00000439399|26|1),INTRON(MODIFIER||||907|SNAP91|protein_coding|CODING|ENST00000521743|26|1),INTRON(MODIFIER|||||SNAP91|nonsense_mediated_decay|CODING|ENST00000518312|26|1),INTRON(MODIFIER|||||SNAP91|nonsense_mediated_decay|CODING|ENST00000521616|25|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	26:0:0:0:0,0:26,26:0,0:0,0	59:0:0:0:6,6:53,54:0,0:0,0
6	87837750	.	C	T	.	PASS	NT=ref;QSS=25;QSS_NT=25;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	17:0:0:0:0,0:17,17:0,0:0,0	64:3:0:0:1,2:42,45:0,0:18,21
6	89226774	.	G	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:0:0:0:0,0:0,0:30,30:0,0	80:0:0:0:0,0:6,6:74,75:0,0
6	90426255	.	C	T	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||5596|MDN1|protein_coding|CODING|ENST00000369393|44|1),INTRON(MODIFIER||||5596|MDN1|protein_coding|CODING|ENST00000428876|44|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	43:0:0:0:0,0:43,43:0,0:0,0	82:1:0:0:2,2:72,72:0,0:7,7
6	90549820	.	C	G	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||CASP8AP2|processed_transcript|NON_CODING|ENST00000237177|1|1),INTRON(MODIFIER|||||CASP8AP2|processed_transcript|NON_CODING|ENST00000419040|1|1),INTRON(MODIFIER|||||CASP8AP2|processed_transcript|NON_CODING|ENST00000444163|1|1),INTRON(MODIFIER|||||CASP8AP2|processed_transcript|NON_CODING|ENST00000547893|1|1),INTRON(MODIFIER|||||CASP8AP2|processed_transcript|NON_CODING|ENST00000548224|1|1),INTRON(MODIFIER|||||CASP8AP2|processed_transcript|NON_CODING|ENST00000551025|1|1),INTRON(MODIFIER|||||CASP8AP2|processed_transcript|NON_CODING|ENST00000552401|1|1),UPSTREAM(MODIFIER|||||Y_RNA|misc_RNA|NON_CODING|ENST00000362760||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:0:0:0:0,0:35,35:0,0:0,0	78:2:0:0:0,0:69,73:7,7:0,0
6	90549822	.	T	C	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||CASP8AP2|processed_transcript|NON_CODING|ENST00000237177|1|1),INTRON(MODIFIER|||||CASP8AP2|processed_transcript|NON_CODING|ENST00000419040|1|1),INTRON(MODIFIER|||||CASP8AP2|processed_transcript|NON_CODING|ENST00000444163|1|1),INTRON(MODIFIER|||||CASP8AP2|processed_transcript|NON_CODING|ENST00000547893|1|1),INTRON(MODIFIER|||||CASP8AP2|processed_transcript|NON_CODING|ENST00000548224|1|1),INTRON(MODIFIER|||||CASP8AP2|processed_transcript|NON_CODING|ENST00000551025|1|1),INTRON(MODIFIER|||||CASP8AP2|processed_transcript|NON_CODING|ENST00000552401|1|1),UPSTREAM(MODIFIER|||||Y_RNA|misc_RNA|NON_CODING|ENST00000362760||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:0:0:0:0,0:0,0:1,1:34,34	80:2:0:0:0,1:6,6:0,1:72,74
6	92537357	.	A	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:1:0:0:31,32:0,0:0,0:0,0	66:1:0:0:61,61:0,1:4,4:0,0
6	93430991	.	T	G	.	PASS	NT=ref;QSS=23;QSS_NT=23;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||RP11-127B16.1|lincRNA|NON_CODING|ENST00000404689||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	44:0:0:0:0,0:0,0:0,0:44,44	64:1:0:0:0,0:0,0:6,6:57,57
6	93433702	.	G	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||RP11-127B16.1|lincRNA|NON_CODING|ENST00000404689||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:0:0:0:0,0:0,0:30,30:0,0	91:1:0:0:1,1:5,6:83,83:1,1
6	93433707	.	A	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||RP11-127B16.1|lincRNA|NON_CODING|ENST00000404689||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	28:0:0:0:28,28:0,0:0,0:0,0	91:2:0:0:83,83:1,1:0,0:5,7
6	93689254	.	C	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	27:0:0:0:0,0:27,27:0,0:0,0	72:0:0:0:0,0:67,67:5,5:0,0
6	94444932	.	C	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:0:0:0:0,0:37,37:0,0:0,0	86:0:0:0:4,4:82,82:0,0:0,0
6	97395310	.	C	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||176|KLHL32|protein_coding|CODING|ENST00000544166|1|1),INTRON(MODIFIER||||551|KLHL32|protein_coding|CODING|ENST00000539200|1|1),INTRON(MODIFIER||||584|KLHL32|protein_coding|CODING|ENST00000536676|1|1),INTRON(MODIFIER||||620|KLHL32|protein_coding|CODING|ENST00000369261|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:0:0:0:0,0:32,32:0,0:0,0	81:0:0:0:0,0:73,73:0,0:8,8
6	97527789	.	C	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||139|KLHL32|protein_coding|CODING|ENST00000369254|4|1),INTRON(MODIFIER||||176|KLHL32|protein_coding|CODING|ENST00000447886|1|1),INTRON(MODIFIER||||176|KLHL32|protein_coding|CODING|ENST00000544166|5|1),INTRON(MODIFIER||||551|KLHL32|protein_coding|CODING|ENST00000539200|3|1),INTRON(MODIFIER||||584|KLHL32|protein_coding|CODING|ENST00000536676|4|1),INTRON(MODIFIER||||620|KLHL32|protein_coding|CODING|ENST00000369261|5|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	27:0:0:0:0,0:27,27:0,0:0,0	79:0:0:0:6,6:73,73:0,0:0,0
6	99942373	.	A	G	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||289|USP45|protein_coding|CODING|ENST00000329966|5|1),INTRON(MODIFIER||||289|USP45|protein_coding|CODING|ENST00000472914|5|1),INTRON(MODIFIER||||494|USP45|protein_coding|CODING|ENST00000392738|5|1),INTRON(MODIFIER||||766|USP45|protein_coding|CODING|ENST00000369233|5|1),INTRON(MODIFIER||||814|USP45|protein_coding|CODING|ENST00000327681|5|1),INTRON(MODIFIER||||814|USP45|protein_coding|CODING|ENST00000500704|5|1),INTRON(MODIFIER|||||USP45|nonsense_mediated_decay|CODING|ENST00000506871|4|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:0:0:0:32,32:0,0:0,0:0,0	72:0:0:0:68,68:0,0:4,4:0,0
6	99946512	.	C	G	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||182|USP45|protein_coding|CODING|ENST00000369231||1),DOWNSTREAM(MODIFIER|||||USP45|processed_transcript|CODING|ENST00000369232||1),INTRON(MODIFIER||||289|USP45|protein_coding|CODING|ENST00000329966|5|1),INTRON(MODIFIER||||289|USP45|protein_coding|CODING|ENST00000472914|5|1),INTRON(MODIFIER||||494|USP45|protein_coding|CODING|ENST00000392738|5|1),INTRON(MODIFIER||||766|USP45|protein_coding|CODING|ENST00000369233|5|1),INTRON(MODIFIER||||814|USP45|protein_coding|CODING|ENST00000327681|5|1),INTRON(MODIFIER||||814|USP45|protein_coding|CODING|ENST00000500704|5|1),INTRON(MODIFIER|||||USP45|nonsense_mediated_decay|CODING|ENST00000506871|4|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:0:0:0:0,0:38,38:0,0:0,0	60:0:0:0:0,0:56,56:4,4:0,0
6	101730139	.	G	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	26:0:0:0:0,0:1,1:25,26:0,0	70:1:0:0:0,0:0,0:61,63:8,8
6	102610137	.	T	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:1:0:0:0,0:0,0:0,0:34,35	83:0:0:0:4,4:0,0:0,0:79,80
6	104018875	.	A	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:0:0:0:31,31:0,0:0,0:0,0	63:0:0:0:57,57:6,6:0,0:0,0
6	104334312	.	C	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:1:0:0:0,0:29,30:0,0:1,1	62:6:0:0:0,0:45,48:0,0:11,15
6	105343127	.	C	A	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:0:0:0:0,0:37,37:0,0:0,0	80:0:0:0:5,5:75,76:0,0:0,0
6	107407243	rs71574226	G	A	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||828|BEND3|protein_coding|CODING|ENST00000369042|3|1),INTRON(MODIFIER||||828|BEND3|protein_coding|CODING|ENST00000429433|4|1);RSPOS=107407243;GMAF=0.0009;dbSNPBuildID=130;SSR=0;SAO=0;VP=050100080001040116000100;GENEINFO=BEND3:57673;WGT=1;VC=SNV;SLO;INT;VLD;GNO;KGPhase1;KGPROD;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:2:0:0:0,0:0,0:38,41:0,0	62:1:0:0:5,6:1,1:55,57:0,0
6	107418744	.	C	G	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||828|BEND3|protein_coding|CODING|ENST00000369042|3|1),INTRON(MODIFIER||||828|BEND3|protein_coding|CODING|ENST00000429433|4|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:2:0:0:0,0:35,37:0,0:0,0	71:1:0:0:0,0:66,67:4,4:0,0
6	107773716	.	A	G	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||240|PDSS2|protein_coding|CODING|ENST00000369031|1|1),INTRON(MODIFIER||||297|PDSS2|protein_coding|CODING|ENST00000453874|1|1),INTRON(MODIFIER||||399|PDSS2|protein_coding|CODING|ENST00000369037|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:0:0:0:37,37:0,0:0,0:0,0	70:1:0:0:64,64:0,0:5,6:0,0
6	111357242	.	T	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	28:0:0:0:0,0:0,0:0,0:28,30	78:0:0:0:0,0:4,4:0,0:74,74
6	112076790	rs181690905	G	A	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||102|FYN|protein_coding|CODING|ENST00000521062|2|1),INTRON(MODIFIER||||105|FYN|protein_coding|CODING|ENST00000484067|4|1),INTRON(MODIFIER||||115|FYN|protein_coding|CODING|ENST00000523570|2|1),INTRON(MODIFIER||||117|FYN|protein_coding|CODING|ENST00000518630|3|1),INTRON(MODIFIER||||119|FYN|protein_coding|CODING|ENST00000462598|2|1),INTRON(MODIFIER||||138|FYN|protein_coding|CODING|ENST00000523574|2|1),INTRON(MODIFIER||||144|FYN|protein_coding|CODING|ENST00000524310|2|1),INTRON(MODIFIER||||151|FYN|protein_coding|CODING|ENST00000523238|2|1),INTRON(MODIFIER||||152|FYN|protein_coding|CODING|ENST00000518295|3|1),INTRON(MODIFIER||||174|FYN|protein_coding|CODING|ENST00000517419|1|1),INTRON(MODIFIER||||185|FYN|protein_coding|CODING|ENST00000520518|3|1),INTRON(MODIFIER||||231|FYN|protein_coding|CODING|ENST00000462856|1|1),INTRON(MODIFIER||||482|FYN|protein_coding|CODING|ENST00000229471|1|1),INTRON(MODIFIER||||482|FYN|protein_coding|CODING|ENST00000356013|3|1),INTRON(MODIFIER||||485|FYN|protein_coding|CODING|ENST00000229470|3|1),INTRON(MODIFIER||||485|FYN|protein_coding|CODING|ENST00000544792|2|1),INTRON(MODIFIER||||534|FYN|protein_coding|CODING|ENST00000368678|2|1),INTRON(MODIFIER||||534|FYN|protein_coding|CODING|ENST00000368682|3|1),INTRON(MODIFIER||||537|FYN|protein_coding|CODING|ENST00000354650|3|1),INTRON(MODIFIER||||537|FYN|protein_coding|CODING|ENST00000368667|2|1),INTRON(MODIFIER||||63|FYN|protein_coding|CODING|ENST00000487824|3|1),INTRON(MODIFIER|||||FYN|retained_intron|CODING|ENST00000521361|3|1),INTRON(MODIFIER|||||FYN|retained_intron|CODING|ENST00000523322|1|1);RSPOS=112076790;GMAF=0.0009;dbSNPBuildID=135;SSR=0;SAO=0;VP=050000080005000014000100;GENEINFO=FYN:2534;WGT=1;VC=SNV;INT;ASP;KGPhase1;KGPROD	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:1:0:0:0,0:0,0:35,35:0,1	81:1:0:0:8,8:0,0:72,73:0,0
6	112680005	.	C	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||AL365214.1|miRNA|NON_CODING|ENST00000583484||1),DOWNSTREAM(MODIFIER|||||KRT18P32|processed_pseudogene|NON_CODING|ENST00000439811||1),DOWNSTREAM(MODIFIER|||||KRT18P32|retrotransposed|NON_CODING|ENST00000399684||1),INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||RP11-506B6.3|processed_pseudogene|NON_CODING|ENST00000401872||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:2:0:0:0,0:27,29:0,0:0,0	73:0:0:0:7,7:65,65:1,1:0,0
6	113826341	.	A	G	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:1:0:0:32,33:0,0:0,0:0,0	69:2:0:0:60,63:0,0:7,7:0,0
6	114227617	rs570617	T	C	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-544L8__B.4|antisense|NON_CODING|ENST00000314481|1|1);RSPOS=114227617;RV;dbSNPBuildID=83;SSR=16;SAO=0;VP=05000008000500010e000100;GENEINFO=FLJ34503:285759;WGT=1;VC=SNV;INT;ASP;GNO;KGPilot123;KGPROD;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:1:0:0:0,0:0,0:2,2:35,36	66:2:0:0:0,0:5,5:1,1:58,61
6	115117735	.	T	A	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:0:0:0:0,0:0,0:0,0:33,33	77:2:0:0:7,7:0,0:1,1:67,70
6	117012117	.	C	T	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||141|KPNA5|protein_coding|CODING|ENST00000413340|3|1),INTRON(MODIFIER||||539|KPNA5|protein_coding|CODING|ENST00000356348|2|1),INTRON(MODIFIER||||539|KPNA5|protein_coding|CODING|ENST00000368564|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:0:0:0:0,0:36,36:0,0:0,0	59:0:0:0:0,0:55,55:0,0:4,4
6	117506952	.	C	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:0:0:0:0,0:32,39:0,0:0,0	58:0:0:0:0,0:54,64:0,0:4,5
6	117684538	.	C	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||2341|ROS1|protein_coding|CODING|ENST00000368507|21|1),INTRON(MODIFIER||||2347|ROS1|protein_coding|CODING|ENST00000368508|20|1),INTRON(MODIFIER|||||GOPC|processed_transcript|CODING|ENST00000467125|4|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:1:0:0:0,0:28,29:0,0:0,0	71:0:0:0:0,0:66,66:0,0:5,5
6	120526082	.	C	A	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:1:0:0:0,0:38,39:0,0:0,0	72:1:0:0:6,6:65,66:0,0:0,0
6	121682153	rs186691009	G	A	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=121682153;GMAF=0.0005;dbSNPBuildID=135;SSR=0;SAO=0;VP=050000000005000014000100;WGT=1;VC=SNV;ASP;KGPhase1;KGPROD	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:0:0:0:0,0:0,0:39,39:0,0	69:0:0:0:4,4:0,0:65,65:0,0
6	122195350	.	A	T	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:0:0:0:39,39:0,0:0,0:0,0	66:0:0:0:61,61:0,0:0,0:5,5
6	123020445	.	T	G	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||78|PKIB|protein_coding|CODING|ENST00000368448|3|1),INTRON(MODIFIER||||78|PKIB|protein_coding|CODING|ENST00000368452|3|1),INTRON(MODIFIER||||78|PKIB|protein_coding|CODING|ENST00000392490|2|1),INTRON(MODIFIER||||78|PKIB|protein_coding|CODING|ENST00000392491|5|1),INTRON(MODIFIER||||85|PKIB|protein_coding|CODING|ENST00000258014|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	42:4:0:0:0,0:0,0:0,0:38,42	86:5:1:0:1,1:0,0:5,5:75,80
6	124162552	.	A	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||139|NKAIN2|protein_coding|CODING|ENST00000546092|1|1),INTRON(MODIFIER||||188|NKAIN2|protein_coding|CODING|ENST00000368416|1|1),INTRON(MODIFIER||||208|NKAIN2|protein_coding|CODING|ENST00000368417|1|1),INTRON(MODIFIER|||||NKAIN2|processed_transcript|CODING|ENST00000476571|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:0:0:0:31,31:0,0:0,0:0,0	71:0:0:0:64,65:7,7:0,0:0,0
6	125345547	.	G	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||104|RNF217|protein_coding|CODING|ENST00000368414|2|1),INTRON(MODIFIER||||275|RNF217|protein_coding|CODING|ENST00000359704|3|1),INTRON(MODIFIER||||307|RNF217|protein_coding|CODING|ENST00000560949|1|1),INTRON(MODIFIER||||542|RNF217|protein_coding|CODING|ENST00000521654|1|1),INTRON(MODIFIER|||||RNF217|processed_transcript|CODING|ENST00000454842|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:0:0:0:0,0:0,0:29,29:0,0	74:2:0:0:7,7:0,0:65,67:0,0
6	127326139	.	T	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||406|RP11-73O6.4|protein_coding|CODING|ENST00000563385|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:3:0:0:0,0:0,0:0,0:29,32	71:1:0:0:0,0:6,6:0,1:64,64
6	127399243	.	G	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||406|RP11-73O6.4|protein_coding|CODING|ENST00000563385|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:0:0:0:0,0:0,0:29,29:0,0	67:1:0:0:4,4:0,0:62,63:0,0
6	127646397	.	A	G	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||ECHDC1|retained_intron|CODING|ENST00000368287||1),INTRON(MODIFIER||||134|ECHDC1|protein_coding|CODING|ENST00000531582|4|1),INTRON(MODIFIER||||145|ECHDC1|protein_coding|CODING|ENST00000368289|4|1),INTRON(MODIFIER||||145|ECHDC1|protein_coding|CODING|ENST00000368291|3|1),INTRON(MODIFIER||||150|ECHDC1|protein_coding|CODING|ENST00000534442|5|1),INTRON(MODIFIER||||178|ECHDC1|protein_coding|CODING|ENST00000525745|5|1),INTRON(MODIFIER||||226|ECHDC1|protein_coding|CODING|ENST00000454591|2|1),INTRON(MODIFIER||||284|ECHDC1|protein_coding|CODING|ENST00000309620|4|1),INTRON(MODIFIER||||301|ECHDC1|protein_coding|CODING|ENST00000430841|4|1),INTRON(MODIFIER||||301|ECHDC1|protein_coding|CODING|ENST00000454859|3|1),INTRON(MODIFIER||||301|ECHDC1|protein_coding|CODING|ENST00000474289|3|1),INTRON(MODIFIER||||307|ECHDC1|protein_coding|CODING|ENST00000531967|3|1),INTRON(MODIFIER||||406|RP11-73O6.4|protein_coding|CODING|ENST00000563385|2|1),INTRON(MODIFIER||||70|ECHDC1|protein_coding|CODING|ENST00000528402|2|1),INTRON(MODIFIER|||||ECHDC1|nonsense_mediated_decay|CODING|ENST00000368292|3|1),INTRON(MODIFIER|||||ECHDC1|nonsense_mediated_decay|CODING|ENST00000368295|2|1),INTRON(MODIFIER|||||ECHDC1|nonsense_mediated_decay|CODING|ENST00000479525|3|1),INTRON(MODIFIER|||||ECHDC1|nonsense_mediated_decay|CODING|ENST00000526299|4|1),INTRON(MODIFIER|||||ECHDC1|retained_intron|CODING|ENST00000474240|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:0:0:0:31,31:0,0:0,0:0,0	87:0:0:0:82,82:0,0:5,5:0,0
6	129219468	.	A	T	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||3122|LAMA2|protein_coding|CODING|ENST00000421865|1|1),INTRON(MODIFIER||||406|RP11-73O6.4|protein_coding|CODING|ENST00000563385|2|1),INTRON(MODIFIER|||||LAMA2|processed_transcript|CODING|ENST00000466230|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:0:0:0:39,39:0,0:0,0:0,0	79:1:0:0:73,74:0,0:0,0:5,5
6	129552129	.	A	G	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||3122|LAMA2|protein_coding|CODING|ENST00000421865|12|1),INTRON(MODIFIER||||406|RP11-73O6.4|protein_coding|CODING|ENST00000563385|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:0:0:0:32,32:0,0:0,0:0,0	81:1:0:0:73,74:0,0:7,7:0,0
6	131270139	.	T	C	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1005|EPB41L2|protein_coding|CODING|ENST00000337057|3|1),INTRON(MODIFIER||||1005|EPB41L2|protein_coding|CODING|ENST00000368128|3|1),INTRON(MODIFIER||||673|EPB41L2|protein_coding|CODING|ENST00000392427|3|1),INTRON(MODIFIER||||673|EPB41L2|protein_coding|CODING|ENST00000525271|3|1),INTRON(MODIFIER||||706|EPB41L2|protein_coding|CODING|ENST00000525193|2|1),INTRON(MODIFIER||||747|EPB41L2|protein_coding|CODING|ENST00000445890|3|1),INTRON(MODIFIER||||747|EPB41L2|protein_coding|CODING|ENST00000528282|3|1),INTRON(MODIFIER||||811|EPB41L2|protein_coding|CODING|ENST00000527659|2|1),INTRON(MODIFIER||||852|EPB41L2|protein_coding|CODING|ENST00000530481|3|1),INTRON(MODIFIER||||935|EPB41L2|protein_coding|CODING|ENST00000527411|3|1),INTRON(MODIFIER||||935|EPB41L2|protein_coding|CODING|ENST00000529208|3|1),INTRON(MODIFIER|||||EPB41L2|processed_transcript|CODING|ENST00000526333|1|1),INTRON(MODIFIER|||||EPB41L2|processed_transcript|CODING|ENST00000528179|1|1),INTRON(MODIFIER|||||EPB41L2|processed_transcript|CODING|ENST00000530148|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:1:0:0:0,0:0,0:0,0:34,35	70:1:0:0:0,0:5,5:0,0:64,65
6	132707039	.	G	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=DOWNSTREAM(MODIFIER||||115|MOXD1|protein_coding|CODING|ENST00000392401||1),INTRON(MODIFIER||||613|MOXD1|protein_coding|CODING|ENST00000367963|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:0:0:0:0,0:0,0:31,31:0,0	62:2:0:0:6,6:0,0:54,56:0,0
6	134924855	rs17090937	A	G	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||RP11-557H15.5|lincRNA|NON_CODING|ENST00000412602||1),EXON(MODIFIER|||||FAM8A6P|processed_pseudogene|NON_CODING|ENST00000407496|1|1),INTRON(MODIFIER|||||RP11-557H15.4|processed_transcript|NON_CODING|ENST00000434593|1|1);RSPOS=134924855;dbSNPBuildID=123;SSR=1;SAO=0;VP=050000000001070103000140;WGT=1;VC=SNV;VLD;G5A;G5;GNO;OTHERKG;PH3	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:1:0:0:31,32:0,0:0,0:0,0	86:1:0:0:80,81:0,0:5,7:0,0
6	136371061	.	G	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||450|PDE7B|protein_coding|CODING|ENST00000308191|2|1),INTRON(MODIFIER|||||RP13-143G15.3|antisense|NON_CODING|ENST00000413745|1|1),INTRON(MODIFIER|||||RP13-143G15.3|antisense|NON_CODING|ENST00000419926|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:1:0:0:0,0:0,0:28,29:0,0	72:3:0:0:5,6:0,0:63,65:1,1
6	136980818	.	C	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1374|MAP3K5|protein_coding|CODING|ENST00000359015|8|1),UPSTREAM(MODIFIER||||621|MAP3K5|protein_coding|CODING|ENST00000355845||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:1:0:0:0,1:33,33:0,0:0,0	67:0:0:0:0,0:61,61:0,0:6,6
6	136992969	.	A	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1374|MAP3K5|protein_coding|CODING|ENST00000359015|7|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:1:0:0:29,31:0,0:0,0:0,0	70:2:0:0:59,61:0,0:1,1:8,8
6	137774220	.	C	T	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:0:0:0:0,0:36,37:0,0:0,0	71:0:0:0:0,0:66,66:0,0:5,5
6	140222158	.	C	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	28:0:0:0:0,0:27,27:0,0:1,1	82:0:0:0:9,9:73,74:0,0:0,0
6	142514136	.	C	G	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||222|VTA1|protein_coding|CODING|ENST00000452973|4|1),INTRON(MODIFIER||||249|VTA1|protein_coding|CODING|ENST00000367621|4|1),INTRON(MODIFIER||||307|VTA1|protein_coding|CODING|ENST00000367630|5|1),INTRON(MODIFIER|||||VTA1|processed_transcript|CODING|ENST00000491881|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:1:0:0:0,0:36,38:0,0:1,1	76:0:0:0:0,0:66,66:9,9:1,1
6	144051420	.	A	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||153|PHACTR2|protein_coding|CODING|ENST00000397980|2|1),INTRON(MODIFIER||||165|PHACTR2|protein_coding|CODING|ENST00000542769|1|1),INTRON(MODIFIER||||177|PHACTR2|protein_coding|CODING|ENST00000451827|2|1),INTRON(MODIFIER||||554|PHACTR2|protein_coding|CODING|ENST00000305766|2|1),INTRON(MODIFIER||||565|PHACTR2|protein_coding|CODING|ENST00000367582|2|1),INTRON(MODIFIER||||622|PHACTR2|protein_coding|CODING|ENST00000367584|2|1),INTRON(MODIFIER||||634|PHACTR2|protein_coding|CODING|ENST00000427704|2|1),INTRON(MODIFIER||||645|PHACTR2|protein_coding|CODING|ENST00000440869|2|1),INTRON(MODIFIER|||||PHACTR2|retained_intron|CODING|ENST00000402863|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:0:0:0:33,33:0,0:0,0:0,0	60:0:0:0:56,56:4,4:0,0:0,0
6	144741884	.	A	G	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||152|UTRN|protein_coding|CODING|ENST00000421035|2|1),INTRON(MODIFIER||||3433|UTRN|protein_coding|CODING|ENST00000367545|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:1:0:0:33,34:0,0:0,0:0,0	61:0:0:0:57,57:0,0:4,4:0,0
6	144855537	.	G	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||3433|UTRN|protein_coding|CODING|ENST00000367545|42|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:2:0:0:0,0:0,0:31,33:0,0	79:1:0:0:7,7:0,0:71,71:0,0
6	146135094	.	A	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||745|FBXO30|protein_coding|CODING|ENST00000237281|1|1),UPSTREAM(MODIFIER|||||RP11-545I5.3|antisense|NON_CODING|ENST00000452617||1),UPSTREAM(MODIFIER|||||RP11-545I5.3|antisense|NON_CODING|ENST00000587426||1),UPSTREAM(MODIFIER|||||RP11-545I5.3|antisense|NON_CODING|ENST00000587540||1),UPSTREAM(MODIFIER|||||RP11-545I5.3|antisense|NON_CODING|ENST00000591489||1),UPSTREAM(MODIFIER|||||RP11-545I5.3|antisense|NON_CODING|ENST00000592775||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:0:0:0:35,35:0,0:0,0:0,0	78:1:0:0:70,71:0,0:0,0:7,7
6	148035563	.	G	T	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||97|SAMD5|protein_coding|CODING|ENST00000566741|1|1),INTRON(MODIFIER|||||RP11-307P5.1|lincRNA|NON_CODING|ENST00000427015|1|1),INTRON(MODIFIER|||||RP11-307P5.1|lincRNA|NON_CODING|ENST00000432506|1|1),INTRON(MODIFIER|||||RP11-307P5.1|lincRNA|NON_CODING|ENST00000434985|1|1),INTRON(MODIFIER|||||RP11-307P5.1|lincRNA|NON_CODING|ENST00000442094|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:1:0:0:0,0:0,0:36,37:0,0	63:1:0:0:0,0:0,0:55,56:7,7
6	148655902	.	C	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||84|SASH1|protein_coding|CODING|ENST00000367469|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:0:0:0:0,0:32,32:0,0:0,0	83:1:0:0:0,0:75,76:0,0:7,7
6	149504220	.	A	G	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:1:0:0:34,34:0,0:0,0:0,0	77:0:0:0:69,69:0,0:8,8:0,0
6	150480112	.	C	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||165|PPP1R14C|protein_coding|CODING|ENST00000361131|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:1:0:0:0,0:33,34:0,0:0,0	76:1:0:0:0,0:69,71:0,0:6,6
6	151186082	.	A	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER||||113|MTHFD1L|protein_coding|CODING|ENST00000423867||1),UPSTREAM(MODIFIER||||126|MTHFD1L|protein_coding|CODING|ENST00000441122||1),UPSTREAM(MODIFIER||||275|MTHFD1L|protein_coding|CODING|ENST00000367307||1),UPSTREAM(MODIFIER||||978|MTHFD1L|protein_coding|CODING|ENST00000367321||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:1:0:0:32,33:0,0:0,0:0,0	64:1:0:0:59,60:4,4:0,0:0,0
6	152183564	.	A	G	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||310|ESR1|protein_coding|CODING|ENST00000544394|2|1),INTRON(MODIFIER||||334|ESR1|protein_coding|CODING|ENST00000406599|1|1),INTRON(MODIFIER||||483|ESR1|protein_coding|CODING|ENST00000456483|3|1),INTRON(MODIFIER||||595|ESR1|protein_coding|CODING|ENST00000206249|2|1),INTRON(MODIFIER||||595|ESR1|protein_coding|CODING|ENST00000338799|3|1),INTRON(MODIFIER||||595|ESR1|protein_coding|CODING|ENST00000440973|4|1),INTRON(MODIFIER||||595|ESR1|protein_coding|CODING|ENST00000443427|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:0:0:0:32,32:0,0:0,0:0,0	70:1:0:0:62,62:0,0:7,7:0,1
6	152645905	.	C	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||8409|SYNE1|protein_coding|CODING|ENST00000341594|83|1),INTRON(MODIFIER||||8749|SYNE1|protein_coding|CODING|ENST00000423061|80|1),INTRON(MODIFIER||||8749|SYNE1|protein_coding|CODING|ENST00000448038|81|1),INTRON(MODIFIER||||8797|SYNE1|protein_coding|CODING|ENST00000265368|81|1),INTRON(MODIFIER||||8797|SYNE1|protein_coding|CODING|ENST00000367255|81|1),INTRON(MODIFIER|||||SYNE1|retained_intron|CODING|ENST00000490135|5|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:0:0:0:0,0:35,36:0,0:0,0	63:0:0:0:0,0:59,62:0,0:4,4
6	153616801	.	A	G	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||295|AL590867.1|protein_coding|CODING|ENST00000392385|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:1:0:0:34,35:0,0:0,0:0,0	66:1:0:0:59,60:0,0:6,6:0,0
6	154786069	.	T	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||475|CNKSR3|protein_coding|CODING|ENST00000479339|1|1),INTRON(MODIFIER||||555|CNKSR3|protein_coding|CODING|ENST00000367213|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	26:0:0:0:0,0:0,0:0,0:26,26	58:0:0:0:6,6:0,0:1,1:51,52
6	160126496	.	C	T	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=CC->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER||||110|SOD2|protein_coding|CODING|ENST00000537657|1|1),INTRON(MODIFIER||||176|SOD2|protein_coding|CODING|ENST00000546087|3|1),INTRON(MODIFIER||||182|SOD2|protein_coding|CODING|ENST00000535561|1|1),INTRON(MODIFIER||||189|SOD2|protein_coding|CODING|ENST00000545162|1|1),INTRON(MODIFIER||||60|SOD2|protein_coding|CODING|ENST00000401980|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	43:2:0:0:0,0:41,43:0,0:0,1	83:1:0:0:0,0:74,75:0,0:8,10
6	160484530	.	G	A	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|Gct/Act|A1252T|2491|IGF2R|protein_coding|CODING|ENST00000356956|27|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:1:0:0:0,0:0,0:36,37:0,0	75:1:0:0:8,8:0,0:66,68:0,0
6	160576030	.	C	T	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||483|SLC22A1|protein_coding|CODING|ENST00000457470|8|1),INTRON(MODIFIER||||506|SLC22A1|protein_coding|CODING|ENST00000324965|8|1),INTRON(MODIFIER||||554|SLC22A1|protein_coding|CODING|ENST00000366963|9|1),INTRON(MODIFIER|||||SLC22A1|nonsense_mediated_decay|CODING|ENST00000460902|8|1),INTRON(MODIFIER|||||SLC22A1|nonsense_mediated_decay|CODING|ENST00000539263|8|1),UPSTREAM(MODIFIER|||||SLC22A1|retained_intron|CODING|ENST00000478607||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:0:0:0:0,0:38,38:0,0:0,0	71:0:0:0:0,0:65,65:0,0:6,6
6	160768542	.	G	A	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER||||556|SLC22A3|protein_coding|CODING|ENST00000275300||1),UPSTREAM(MODIFIER||||557|SLC22A3|protein_coding|CODING|ENST00000392145||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	44:0:0:0:0,0:0,0:44,44:0,0	82:1:0:0:5,6:0,0:76,76:0,0
6	160953558	.	C	T	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||2040|LPA|protein_coding|CODING|ENST00000316300|38|1),INTRON(MODIFIER||||2040|LPA|protein_coding|CODING|ENST00000447678|39|1),INTRON(MODIFIER|||||LPA|processed_transcript|CODING|ENST00000484276|5|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:0:0:0:0,0:40,40:0,0:0,0	78:0:0:0:1,1:70,70:0,0:7,7
6	161106740	.	G	A	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	42:0:0:0:0,0:0,0:42,42:0,0	69:0:0:0:5,5:0,0:64,64:0,0
6	161976398	rs150878314	C	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||274|PARK2|protein_coding|CODING|ENST00000338468|7|1),INTRON(MODIFIER||||274|PARK2|protein_coding|CODING|ENST00000366894|7|1),INTRON(MODIFIER||||316|PARK2|protein_coding|CODING|ENST00000366896|5|1),INTRON(MODIFIER||||368|PARK2|protein_coding|CODING|ENST00000366892|8|1),INTRON(MODIFIER||||437|PARK2|protein_coding|CODING|ENST00000366897|7|1),INTRON(MODIFIER||||465|PARK2|protein_coding|CODING|ENST00000366898|8|1),INTRON(MODIFIER|||||PARK2|nonsense_mediated_decay|CODING|ENST00000479615|6|1);RSPOS=161976398;GMAF=0.0014;dbSNPBuildID=134;SSR=0;SAO=0;VP=050000080005000014000100;GENEINFO=PARK2:5071;WGT=1;VC=SNV;INT;ASP;KGPhase1;KGPROD	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:0:0:0:0,0:30,30:0,0:0,0	89:0:0:0:0,0:82,83:0,0:7,7
6	162733307	.	T	G	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||274|PARK2|protein_coding|CODING|ENST00000338468|2|1),INTRON(MODIFIER||||274|PARK2|protein_coding|CODING|ENST00000366894|2|1),INTRON(MODIFIER||||316|PARK2|protein_coding|CODING|ENST00000366896|2|1),INTRON(MODIFIER||||368|PARK2|protein_coding|CODING|ENST00000366892|2|1),INTRON(MODIFIER||||437|PARK2|protein_coding|CODING|ENST00000366897|2|1),INTRON(MODIFIER||||465|PARK2|protein_coding|CODING|ENST00000366898|2|1),INTRON(MODIFIER|||||PARK2|nonsense_mediated_decay|CODING|ENST00000479615|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:1:0:0:0,0:0,0:0,0:31,33	66:1:0:0:0,0:0,0:9,9:56,57
6	163123344	.	A	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||274|PARK2|protein_coding|CODING|ENST00000338468|1|1),INTRON(MODIFIER||||274|PARK2|protein_coding|CODING|ENST00000366894|1|1),INTRON(MODIFIER||||316|PARK2|protein_coding|CODING|ENST00000366896|1|1),INTRON(MODIFIER||||368|PARK2|protein_coding|CODING|ENST00000366892|1|1),INTRON(MODIFIER||||437|PARK2|protein_coding|CODING|ENST00000366897|1|1),INTRON(MODIFIER||||465|PARK2|protein_coding|CODING|ENST00000366898|1|1),INTRON(MODIFIER|||||PARK2|nonsense_mediated_decay|CODING|ENST00000479615|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:0:0:0:32,32:0,0:0,0:0,0	85:0:0:0:79,79:0,0:0,0:6,6
6	163364013	.	G	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||257|PACRG|protein_coding|CODING|ENST00000366888|2|1),INTRON(MODIFIER||||257|PACRG|protein_coding|CODING|ENST00000366889|3|1),INTRON(MODIFIER||||296|PACRG|protein_coding|CODING|ENST00000337019|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	26:0:0:0:0,0:0,0:26,27:0,0	57:0:0:0:0,0:0,0:51,51:6,6
6	165785936	.	A	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||779|PDE10A|protein_coding|CODING|ENST00000354448|18|1),INTRON(MODIFIER||||779|PDE10A|protein_coding|CODING|ENST00000366882|19|1),INTRON(MODIFIER||||789|PDE10A|protein_coding|CODING|ENST00000539869|18|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	23:0:0:0:23,24:0,0:0,0:0,0	41:0:0:0:35,35:0,0:6,8:0,0
6	165785967	.	G	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||779|PDE10A|protein_coding|CODING|ENST00000354448|18|1),INTRON(MODIFIER||||779|PDE10A|protein_coding|CODING|ENST00000366882|19|1),INTRON(MODIFIER||||789|PDE10A|protein_coding|CODING|ENST00000539869|18|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	21:0:0:0:0,0:0,0:21,22:0,0	40:0:0:0:6,8:0,0:34,34:0,0
6	166091763	.	G	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->CG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER|||||RP11-252P19.3|lincRNA|NON_CODING|ENST00000580695|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:1:0:0:0,0:0,1:31,48:0,0	83:4:0:0:0,0:6,9:73,121:0,0
6	167127470	.	A	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||140|RPS6KA2|protein_coding|CODING|ENST00000507371|1|1),INTRON(MODIFIER||||170|RPS6KA2|protein_coding|CODING|ENST00000506565|4|1),INTRON(MODIFIER||||741|RPS6KA2|protein_coding|CODING|ENST00000503859|2|1),INTRON(MODIFIER||||758|RPS6KA2|protein_coding|CODING|ENST00000510118|3|1),INTRON(MODIFIER||||95|RPS6KA2|protein_coding|CODING|ENST00000512860|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:1:0:0:32,33:0,0:0,0:0,0	74:1:0:0:69,70:0,0:4,4:0,0
6	167580692	.	A	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||TCP10L2|processed_transcript|CODING|ENST00000539001||1),INTRON(MODIFIER||||43|TCP10L2|protein_coding|CODING|ENST00000486697|3|1),UPSTREAM(MODIFIER||||353|TCP10L2|protein_coding|CODING|ENST00000366832||1),UPSTREAM(MODIFIER|||||TCP10L2|nonsense_mediated_decay|CODING|ENST00000283507||1),UPSTREAM(MODIFIER|||||TCP10L2|retained_intron|CODING|ENST00000382669||1),UPSTREAM(MODIFIER|||||TCP10L2|retained_intron|CODING|ENST00000464222||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:0:0:0:29,29:0,0:0,0:0,0	74:0:0:0:67,67:0,0:7,8:0,0
6	167782491	.	A	G	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||207|TCP10|protein_coding|CODING|ENST00000460930||1),DOWNSTREAM(MODIFIER||||326|TCP10|protein_coding|CODING|ENST00000397829||1),DOWNSTREAM(MODIFIER|||||TCP10|retained_intron|CODING|ENST00000463894||1),DOWNSTREAM(MODIFIER|||||TCP10|retained_intron|CODING|ENST00000514083||1),INTRON(MODIFIER||||298|TCP10|protein_coding|CODING|ENST00000366827|7|1),INTRON(MODIFIER|||||TCP10|retained_intron|CODING|ENST00000508373|5|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:1:0:0:33,34:0,0:0,0:0,0	70:0:0:0:64,65:0,0:6,9:0,0
6	167816335	rs113124885	C	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=167816335;dbSNPBuildID=132;SSR=0;SAO=0;VP=050000000001000102000100;WGT=1;VC=SNV;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:3:0:0:0,0:33,44:1,2:0,0	68:6:0:0:0,1:55,61:0,2:7,7
6	168099657	.	C	G	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:1:0:0:0,0:37,38:0,0:1,1	81:3:0:0:0,0:71,74:7,7:0,0
6	168403041	rs62426263	T	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||384|KIF25|protein_coding|CODING|ENST00000443060|1|1),INTRON(MODIFIER|||||KIF25|processed_transcript|CODING|ENST00000515361|2|1);RSPOS=168403041;dbSNPBuildID=129;SSR=0;SAO=0;VP=050000000001040102000100;WGT=1;VC=SNV;VLD;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	27:0:0:0:0,0:0,0:0,0:27,29	78:1:0:0:0,0:5,5:0,0:72,77
6	168730040	.	T	C	.	PASS	NT=ref;QSS=23;QSS_NT=23;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:0:0:0:0,0:1,1:0,0:32,32	88:3:0:0:0,0:19,22:0,0:66,67
6	168730470	.	T	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:1:0:0:0,0:0,1:0,0:39,40	89:1:0:0:0,0:7,7:0,0:81,81
6	168932217	.	G	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||446|SMOC2|protein_coding|CODING|ENST00000356284|4|1),INTRON(MODIFIER||||457|SMOC2|protein_coding|CODING|ENST00000354536|4|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:2:0:0:0,0:0,0:31,33:0,0	49:0:0:0:5,5:0,0:44,44:0,0
6	168938987	.	C	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||446|SMOC2|protein_coding|CODING|ENST00000356284|4|1),INTRON(MODIFIER||||457|SMOC2|protein_coding|CODING|ENST00000354536|4|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:1:0:0:0,0:28,35:0,0:0,0	40:2:0:0:0,0:33,42:5,6:0,0
6	169019090	rs11969664	G	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||446|SMOC2|protein_coding|CODING|ENST00000356284|9|1),INTRON(MODIFIER||||457|SMOC2|protein_coding|CODING|ENST00000354536|9|1);RSPOS=169019090;dbSNPBuildID=120;SSR=0;SAO=0;VP=050000080001000002000100;GENEINFO=SMOC2:64094;WGT=1;VC=SNV;INT;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	26:5:0:0:0,1:0,0:21,28:0,0	61:5:0:0:8,11:0,0:48,52:0,0
6	169278761	.	T	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	22:1:0:0:1,1:0,0:1,2:19,19	38:3:0:0:0,0:6,7:0,0:29,32
6	169598355	rs9689852	T	C	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=TT->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=169598355;GMAF=0.4075;dbSNPBuildID=119;SSR=0;SAO=0;VP=050100000005040116000100;WGT=1;VC=SNV;SLO;ASP;VLD;GNO;KGPhase1;KGPROD;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:1:0:0:1,2:0,2:0,0:31,32	76:2:0:0:0,1:17,20:0,0:57,62
6	169979801	.	A	G	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||730|WDR27|protein_coding|CODING|ENST00000423258|21|1),INTRON(MODIFIER||||857|WDR27|protein_coding|CODING|ENST00000333572|24|1),INTRON(MODIFIER||||895|WDR27|protein_coding|CODING|ENST00000448612|24|1),INTRON(MODIFIER|||||WDR27|processed_transcript|CODING|ENST00000479310|9|1),INTRON(MODIFIER|||||WDR27|processed_transcript|CODING|ENST00000546525|19|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:1:0:0:33,34:0,0:0,0:0,0	80:2:0:0:68,70:0,0:10,10:0,0
6	170021883	.	T	C	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||730|WDR27|protein_coding|CODING|ENST00000423258|18|1),INTRON(MODIFIER||||857|WDR27|protein_coding|CODING|ENST00000333572|21|1),INTRON(MODIFIER||||895|WDR27|protein_coding|CODING|ENST00000448612|21|1),INTRON(MODIFIER|||||WDR27|processed_transcript|CODING|ENST00000479310|6|1),INTRON(MODIFIER|||||WDR27|processed_transcript|CODING|ENST00000546525|16|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:0:0:0:0,0:0,0:0,0:37,38	82:0:0:0:0,0:6,6:0,0:76,76
6	170044261	rs56108827	G	C	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||730|WDR27|protein_coding|CODING|ENST00000423258|13|1),INTRON(MODIFIER||||857|WDR27|protein_coding|CODING|ENST00000333572|16|1),INTRON(MODIFIER||||895|WDR27|protein_coding|CODING|ENST00000448612|16|1),INTRON(MODIFIER|||||WDR27|processed_transcript|CODING|ENST00000479310|2|1),INTRON(MODIFIER|||||WDR27|processed_transcript|CODING|ENST00000546525|12|1);RSPOS=170044261;dbSNPBuildID=129;SSR=0;SAO=0;VP=050000080005000102000100;GENEINFO=WDR27:253769;WGT=1;VC=SNV;INT;ASP;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	27:0:0:0:0,0:1,1:26,33:0,0	44:3:0:0:0,0:10,15:31,44:0,0
6	170344914	.	G	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:0:0:0:0,0:0,0:32,32:0,0	58:1:0:0:5,5:0,0:52,55:0,0
6	170413844	.	T	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:1:0:0:0,0:0,0:2,2:32,34	91:2:0:0:0,0:12,13:2,3:75,76
6	170489325	.	C	G	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:0:2:0:0,0:33,35:0,0:0,0	69:1:3:0:0,3:61,75:7,16:0,0
6	170564225	.	G	A	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=EXON(MODIFIER|||||RP5-1086L22.1|antisense|NON_CODING|ENST00000452071|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:1:0:0:0,0:0,0:37,38:1,1	56:0:0:0:5,5:0,0:51,51:0,0
6	170811216	.	T	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:2:0:0:0,0:0,0:0,0:29,32	72:4:0:0:0,0:5,7:1,1:62,65
7	376948	.	C	A	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:1:0:0:0,0:38,40:0,0:0,0	75:3:0:0:5,6:67,72:0,0:0,0
7	462754	.	G	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:1:0:0:0,0:0,0:28,29:0,0	58:2:0:0:7,7:0,1:49,50:0,0
7	497315	.	T	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	43:3:0:0:1,1:1,4:0,0:38,42	76:15:1:0:0,0:10,23:0,1:51,66
7	497319	rs147764520	A	G	.	PASS	NT=ref;QSS=23;QSS_NT=23;SGT=AA->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=497319;GMAF=0.071;dbSNPBuildID=134;SSR=0;SAO=0;VP=050000000005000014000100;WGT=1;VC=SNV;ASP;KGPhase1;KGPROD	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	44:3:0:0:40,45:1,2:0,1:0,0	82:16:0:0:55,74:1,5:10,16:0,0
7	497327	.	C	T	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	47:4:0:0:0,0:43,51:0,0:0,0	95:14:0:0:0,0:75,101:0,0:6,6
7	498767	.	C	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	28:1:0:0:0,0:27,28:0,0:0,0	66:2:0:0:1,1:55,74:1,1:7,9
7	648262	rs111851089	G	T	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||AC147651.4|antisense|NON_CODING|ENST00000429872||1),INTRON(MODIFIER||||164|PRKAR1B|protein_coding|CODING|ENST00000417852|4|1),INTRON(MODIFIER||||168|PRKAR1B|protein_coding|CODING|ENST00000414568|3|1),INTRON(MODIFIER||||296|PRKAR1B|protein_coding|CODING|ENST00000430040|4|1),INTRON(MODIFIER||||381|PRKAR1B|protein_coding|CODING|ENST00000360274|4|1),INTRON(MODIFIER||||381|PRKAR1B|protein_coding|CODING|ENST00000403562|4|1),INTRON(MODIFIER||||381|PRKAR1B|protein_coding|CODING|ENST00000406797|4|1),INTRON(MODIFIER||||381|PRKAR1B|protein_coding|CODING|ENST00000537384|4|1),INTRON(MODIFIER||||381|PRKAR1B|protein_coding|CODING|ENST00000544935|4|1);RSPOS=648262;dbSNPBuildID=132;SSR=0;SAO=0;VP=050000080005000102000100;GENEINFO=PRKAR1B:5575;WGT=1;VC=SNV;INT;ASP;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:0:0:0:0,0:0,0:36,47:0,1	92:3:0:0:0,0:0,0:79,86:10,10
7	933302	.	A	G	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||154|GET4|protein_coding|CODING|ENST00000412734||1),DOWNSTREAM(MODIFIER||||157|GET4|protein_coding|CODING|ENST00000426056||1),DOWNSTREAM(MODIFIER||||302|ADAP1|protein_coding|CODING|ENST00000449296||1),DOWNSTREAM(MODIFIER||||374|ADAP1|protein_coding|CODING|ENST00000265846||1),DOWNSTREAM(MODIFIER|||||ADAP1|retained_intron|CODING|ENST00000478000||1),DOWNSTREAM(MODIFIER|||||ADAP1|retained_intron|CODING|ENST00000495809||1),DOWNSTREAM(MODIFIER|||||GET4|retained_intron|CODING|ENST00000483469||1),INTRON(MODIFIER||||274|GET4|protein_coding|CODING|ENST00000407192|5|1),INTRON(MODIFIER||||327|GET4|protein_coding|CODING|ENST00000265857|6|1),INTRON(MODIFIER|||||GET4|retained_intron|CODING|ENST00000464468|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:0:0:0:31,34:0,0:0,0:0,0	99:0:0:0:88,91:0,0:11,11:0,0
7	1228631	rs201587789	G	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=1228631;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:2:0:0:0,0:0,0:31,33:0,0	78:4:0:0:7,10:0,0:67,72:0,0
7	1910959	.	C	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||265|MAD1L1|protein_coding|CODING|ENST00000450235|5|1),INTRON(MODIFIER||||626|MAD1L1|protein_coding|CODING|ENST00000402746|16|1),INTRON(MODIFIER||||718|MAD1L1|protein_coding|CODING|ENST00000265854|17|1),INTRON(MODIFIER||||718|MAD1L1|protein_coding|CODING|ENST00000399654|18|1),INTRON(MODIFIER||||718|MAD1L1|protein_coding|CODING|ENST00000406869|18|1),INTRON(MODIFIER|||||MAD1L1|processed_transcript|CODING|ENST00000481633|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:2:0:0:0,0:32,36:0,0:0,0	64:6:0:0:0,0:54,70:0,1:4,5
7	2048410	.	G	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||198|MAD1L1|protein_coding|CODING|ENST00000438959|3|1),INTRON(MODIFIER||||626|MAD1L1|protein_coding|CODING|ENST00000402746|11|1),INTRON(MODIFIER||||718|MAD1L1|protein_coding|CODING|ENST00000265854|12|1),INTRON(MODIFIER||||718|MAD1L1|protein_coding|CODING|ENST00000399654|13|1),INTRON(MODIFIER||||718|MAD1L1|protein_coding|CODING|ENST00000406869|13|1),INTRON(MODIFIER||||79|MAD1L1|protein_coding|CODING|ENST00000444373|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	25:2:0:0:0,0:0,0:23,25:0,0	49:1:0:0:1,1:0,0:41,41:6,7
7	2117306	.	C	A	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||198|MAD1L1|protein_coding|CODING|ENST00000438959|1|1),INTRON(MODIFIER||||40|MAD1L1|protein_coding|CODING|ENST00000421113|1|1),INTRON(MODIFIER||||626|MAD1L1|protein_coding|CODING|ENST00000402746|9|1),INTRON(MODIFIER||||718|MAD1L1|protein_coding|CODING|ENST00000265854|10|1),INTRON(MODIFIER||||718|MAD1L1|protein_coding|CODING|ENST00000399654|11|1),INTRON(MODIFIER||||718|MAD1L1|protein_coding|CODING|ENST00000406869|11|1),INTRON(MODIFIER||||79|MAD1L1|protein_coding|CODING|ENST00000444373|1|1),INTRON(MODIFIER|||||MAD1L1|processed_transcript|CODING|ENST00000464742|2|1),INTRON(MODIFIER|||||MAD1L1|processed_transcript|CODING|ENST00000483165|1|1),INTRON(MODIFIER|||||MAD1L1|processed_transcript|CODING|ENST00000491858|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:1:0:0:0,0:35,36:0,0:0,0	82:1:0:0:5,5:76,77:0,0:0,0
7	2155225	.	G	A	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||626|MAD1L1|protein_coding|CODING|ENST00000402746|9|1),INTRON(MODIFIER||||718|MAD1L1|protein_coding|CODING|ENST00000265854|10|1),INTRON(MODIFIER||||718|MAD1L1|protein_coding|CODING|ENST00000399654|11|1),INTRON(MODIFIER||||718|MAD1L1|protein_coding|CODING|ENST00000406869|11|1),INTRON(MODIFIER|||||MAD1L1|processed_transcript|CODING|ENST00000464742|2|1),INTRON(MODIFIER|||||MAD1L1|processed_transcript|CODING|ENST00000491858|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	50:3:0:0:0,0:0,0:47,51:0,0	84:1:0:0:5,5:0,0:78,81:0,0
7	2371806	.	T	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||159|SNX8|protein_coding|CODING|ENST00000435336|1|1),INTRON(MODIFIER||||84|SNX8|protein_coding|CODING|ENST00000447136|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:0:0:0:1,1:0,0:1,1:37,37	92:0:0:0:0,0:7,7:0,0:85,85
7	2965771	.	A	C	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1154|CARD11|protein_coding|CODING|ENST00000396946|14|1),INTRON(MODIFIER||||270|CARD11|protein_coding|CODING|ENST00000355508|3|1),UPSTREAM(MODIFIER|||||CARD11|retained_intron|CODING|ENST00000480332||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	22:0:0:0:22,22:0,0:0,0:0,0	72:8:0:0:51,53:12,22:0,0:1,1
7	3575864	rs113322347	T	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||2193|SDK1|protein_coding|CODING|ENST00000389531|1|1),INTRON(MODIFIER||||2213|SDK1|protein_coding|CODING|ENST00000404826|1|1);RSPOS=3575864;GMAF=0.0234;dbSNPBuildID=132;SSR=0;SAO=0;VP=050100080001040116000100;GENEINFO=SDK1:221935;WGT=1;VC=SNV;SLO;INT;VLD;GNO;KGPhase1;KGPROD;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	27:0:0:0:0,0:0,0:0,0:27,28	76:1:0:0:0,0:0,0:8,8:67,68
7	4118180	.	A	G	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||2193|SDK1|protein_coding|CODING|ENST00000389531|21|1),INTRON(MODIFIER||||2213|SDK1|protein_coding|CODING|ENST00000404826|21|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:0:0:0:39,39:0,0:0,0:0,0	63:0:0:0:58,58:1,1:4,4:0,0
7	4123332	rs138301705	C	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||2193|SDK1|protein_coding|CODING|ENST00000389531|22|1),INTRON(MODIFIER||||2213|SDK1|protein_coding|CODING|ENST00000404826|22|1);RSPOS=4123332;dbSNPBuildID=134;SSR=0;SAO=0;VP=050000080005000002000100;GENEINFO=SDK1:221935;WGT=1;VC=SNV;INT;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:5:0:0:0,0:29,54:0,0:0,0	99:3:0:0:0,0:90,130:0,0:6,8
7	4198906	.	A	G	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||2193|SDK1|protein_coding|CODING|ENST00000389531|31|1),INTRON(MODIFIER||||2213|SDK1|protein_coding|CODING|ENST00000404826|31|1),INTRON(MODIFIER|||||SDK1|retained_intron|CODING|ENST00000476701|5|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	44:0:0:0:44,44:0,0:0,0:0,0	85:0:0:0:80,81:1,1:4,4:0,0
7	4300480	.	G	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER||||2193|SDK1|protein_coding|CODING|ENST00000389531|43|1),INTRON(MODIFIER||||2213|SDK1|protein_coding|CODING|ENST00000404826|44|1),INTRON(MODIFIER|||||SDK1|processed_transcript|CODING|ENST00000466611|5|1),INTRON(MODIFIER|||||SDK1|retained_intron|CODING|ENST00000476701|18|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:2:0:0:0,0:0,0:38,42:0,0	73:3:0:0:5,5:1,1:64,70:0,0
7	5226653	.	G	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER||||425|WIPI2|protein_coding|CODING|ENST00000382384||1),UPSTREAM(MODIFIER||||436|WIPI2|protein_coding|CODING|ENST00000401525||1),UPSTREAM(MODIFIER||||443|WIPI2|protein_coding|CODING|ENST00000404704||1),UPSTREAM(MODIFIER||||454|WIPI2|protein_coding|CODING|ENST00000288828||1),UPSTREAM(MODIFIER|||||WIPI2|processed_transcript|CODING|ENST00000485854||1),UPSTREAM(MODIFIER|||||WIPI2|processed_transcript|CODING|ENST00000496867||1),UPSTREAM(MODIFIER|||||WIPI2|retained_intron|CODING|ENST00000466014||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:0:0:0:0,0:0,0:34,36:0,0	61:0:0:0:6,6:0,0:55,57:0,0
7	5226834	.	A	G	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER||||425|WIPI2|protein_coding|CODING|ENST00000382384||1),UPSTREAM(MODIFIER||||436|WIPI2|protein_coding|CODING|ENST00000401525||1),UPSTREAM(MODIFIER||||443|WIPI2|protein_coding|CODING|ENST00000404704||1),UPSTREAM(MODIFIER||||454|WIPI2|protein_coding|CODING|ENST00000288828||1),UPSTREAM(MODIFIER|||||WIPI2|processed_transcript|CODING|ENST00000485854||1),UPSTREAM(MODIFIER|||||WIPI2|processed_transcript|CODING|ENST00000496867||1),UPSTREAM(MODIFIER|||||WIPI2|retained_intron|CODING|ENST00000466014||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:0:0:0:33,35:0,0:0,0:0,0	69:3:0:0:57,59:0,0:9,12:0,0
7	5345468	.	A	G	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||2968|TNRC18|protein_coding|CODING|ENST00000399537||1),DOWNSTREAM(MODIFIER||||2968|TNRC18|protein_coding|CODING|ENST00000430969||1),DOWNSTREAM(MODIFIER||||516|SLC29A4|protein_coding|CODING|ENST00000406453||1),DOWNSTREAM(MODIFIER||||530|SLC29A4|protein_coding|CODING|ENST00000297195||1),DOWNSTREAM(MODIFIER||||530|SLC29A4|protein_coding|CODING|ENST00000396872||1),DOWNSTREAM(MODIFIER|||||SLC29A4|processed_transcript|CODING|ENST00000439491||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:0:0:0:38,38:0,0:0,0:0,0	90:2:0:0:79,81:0,0:9,9:0,0
7	5412588	.	G	A	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||307|TNRC18|protein_coding|CODING|ENST00000413081||1),INTRON(MODIFIER||||2968|TNRC18|protein_coding|CODING|ENST00000399537|10|1),INTRON(MODIFIER||||2968|TNRC18|protein_coding|CODING|ENST00000430969|10|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:0:0:0:0,0:0,0:36,36:0,0	91:0:0:0:5,5:0,0:86,86:0,0
7	5456224	.	T	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||130|TNRC18|protein_coding|CODING|ENST00000399434|1|1),INTRON(MODIFIER||||2968|TNRC18|protein_coding|CODING|ENST00000399537|2|1),INTRON(MODIFIER||||2968|TNRC18|protein_coding|CODING|ENST00000430969|2|1),UPSTREAM(MODIFIER|||||AC092171.2|antisense|NON_CODING|ENST00000455866||1),UPSTREAM(MODIFIER|||||AC093620.5|antisense|NON_CODING|ENST00000342963||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:3:0:0:0,0:0,0:1,1:30,33	59:2:0:0:5,5:0,0:0,1:52,53
7	6168949	.	A	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1042|USP42|protein_coding|CODING|ENST00000426246|1|1),INTRON(MODIFIER||||1316|USP42|protein_coding|CODING|ENST00000306177|3|1),INTRON(MODIFIER||||474|USP42|protein_coding|CODING|ENST00000465073|2|1),INTRON(MODIFIER|||||USP42|nonsense_mediated_decay|CODING|ENST00000404008|5|1),INTRON(MODIFIER|||||USP42|nonsense_mediated_decay|CODING|ENST00000521713|3|1),INTRON(MODIFIER|||||USP42|retained_intron|CODING|ENST00000479544|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:2:0:0:31,33:0,0:0,0:0,0	68:1:0:0:63,66:0,0:4,4:0,0
7	7086548	.	C	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:1:0:0:0,0:29,30:0,0:0,0	81:1:0:0:6,6:74,76:0,0:0,0
7	7112455	.	C	T	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||AC092104.3|miRNA|NON_CODING|ENST00000581847||1),UPSTREAM(MODIFIER|||||AC092104.4|miRNA|NON_CODING|ENST00000581017||1),UPSTREAM(MODIFIER|||||AC092104.5|miRNA|NON_CODING|ENST00000580342||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	44:2:0:0:0,0:42,44:0,0:0,0	84:1:0:0:0,0:77,79:0,0:6,6
7	7112461	.	T	A	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||AC092104.3|miRNA|NON_CODING|ENST00000581847||1),UPSTREAM(MODIFIER|||||AC092104.4|miRNA|NON_CODING|ENST00000581017||1),UPSTREAM(MODIFIER|||||AC092104.5|miRNA|NON_CODING|ENST00000580342||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	45:3:0:0:0,0:0,0:0,0:42,45	80:2:0:0:4,4:1,1:0,0:73,76
7	9127958	rs191608245	A	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=9127958;GMAF=0.0037;dbSNPBuildID=135;SSR=0;SAO=0;VP=050000000005000014000100;WGT=1;VC=SNV;ASP;KGPhase1;KGPROD	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	27:0:0:0:27,27:0,0:0,0:0,0	81:0:0:0:75,76:0,0:6,6:0,0
7	9580325	.	A	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:0:0:0:38,38:1,1:0,0:0,0	92:0:0:0:87,87:5,5:0,0:0,0
7	10327632	.	C	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:0:0:0:0,0:37,37:0,0:0,0	70:0:0:0:4,4:66,66:0,0:0,0
7	11442396	.	T	C	.	PASS	NT=ref;QSS=24;QSS_NT=24;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1657|THSD7A|protein_coding|CODING|ENST00000423059|22|1),INTRON(MODIFIER|||||AC004538.3|antisense|NON_CODING|ENST00000445839|3|1),UPSTREAM(MODIFIER|||||AC004160.4|antisense|NON_CODING|ENST00000425837||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	46:0:0:0:0,0:0,0:0,0:46,46	92:2:0:0:0,0:10,10:0,1:80,81
7	11562117	.	C	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||AC004538.3|antisense|NON_CODING|ENST00000445839||1),INTRON(MODIFIER||||1657|THSD7A|protein_coding|CODING|ENST00000423059|6|1),INTRON(MODIFIER|||||THSD7A|processed_transcript|CODING|ENST00000497575|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:0:0:0:0,0:32,32:0,0:0,0	92:0:0:0:0,0:81,81:0,0:11,11
7	12019292	.	C	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:0:0:0:0,0:31,31:0,0:0,0	72:0:0:0:1,1:64,64:0,0:7,7
7	12566505	.	A	G	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||AC005281.1|processed_transcript|NON_CODING|ENST00000418428|2|1),INTRON(MODIFIER|||||AC005281.1|processed_transcript|NON_CODING|ENST00000424453|1|1),INTRON(MODIFIER|||||AC005281.1|processed_transcript|NON_CODING|ENST00000443874|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	43:1:0:0:41,44:0,0:0,0:1,2	94:2:0:0:85,90:1,2:6,7:0,0
7	14313067	.	A	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||773|DGKB|protein_coding|CODING|ENST00000406247|22|1),INTRON(MODIFIER||||785|DGKB|protein_coding|CODING|ENST00000444700|21|1),INTRON(MODIFIER||||796|DGKB|protein_coding|CODING|ENST00000407950|22|1),INTRON(MODIFIER||||803|DGKB|protein_coding|CODING|ENST00000402815|23|1),INTRON(MODIFIER||||804|DGKB|protein_coding|CODING|ENST00000258767|22|1),INTRON(MODIFIER||||804|DGKB|protein_coding|CODING|ENST00000399322|22|1),INTRON(MODIFIER||||804|DGKB|protein_coding|CODING|ENST00000403951|23|1),INTRON(MODIFIER|||||DGKB|processed_transcript|CODING|ENST00000403963|22|1),UPSTREAM(MODIFIER|||||DGKB|processed_transcript|CODING|ENST00000493142||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:0:0:0:31,31:0,0:0,0:0,0	82:0:0:0:75,75:0,0:0,0:7,7
7	14901132	.	A	T	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||74|DGKB|protein_coding|CODING|ENST00000437998|1|1),INTRON(MODIFIER||||785|DGKB|protein_coding|CODING|ENST00000444700|1|1),INTRON(MODIFIER||||796|DGKB|protein_coding|CODING|ENST00000407950|1|1),INTRON(MODIFIER||||803|DGKB|protein_coding|CODING|ENST00000402815|1|1),INTRON(MODIFIER||||804|DGKB|protein_coding|CODING|ENST00000403951|1|1),INTRON(MODIFIER|||||DGKB|processed_transcript|CODING|ENST00000403963|1|1),INTRON(MODIFIER|||||DGKB|processed_transcript|CODING|ENST00000463981|1|1),INTRON(MODIFIER|||||DGKB|processed_transcript|CODING|ENST00000467449|1|1),INTRON(MODIFIER|||||DGKB|retained_intron|CODING|ENST00000477401|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:1:0:0:39,39:0,1:0,0:0,0	77:0:0:0:72,72:0,0:0,0:5,5
7	16397651	.	G	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||401|ISPD|protein_coding|CODING|ENST00000399310|2|1),INTRON(MODIFIER||||451|ISPD|protein_coding|CODING|ENST00000407010|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:2:0:0:0,0:0,1:31,32:0,0	78:0:0:0:0,0:0,0:72,72:6,6
7	16759220	.	G	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||AC073333.8|antisense|NON_CODING|ENST00000418907|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:0:0:0:0,0:0,0:31,31:0,0	86:0:0:0:4,4:0,0:82,82:0,0
7	16772025	.	C	T	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	19:1:0:0:0,0:18,21:0,0:0,0	37:0:0:0:0,0:29,34:0,0:8,8
7	17859244	.	C	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||888|SNX13|protein_coding|CODING|ENST00000409389|18|1),INTRON(MODIFIER||||957|SNX13|protein_coding|CODING|ENST00000428135|18|1),INTRON(MODIFIER|||||SNX13|nonsense_mediated_decay|CODING|ENST00000409076|19|1),INTRON(MODIFIER|||||SNX13|nonsense_mediated_decay|CODING|ENST00000444712|17|1),INTRON(MODIFIER|||||SNX13|processed_transcript|CODING|ENST00000496855|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:1:0:0:0,0:32,33:0,0:0,0	85:0:0:0:0,0:78,78:0,0:7,7
7	18126332	.	G	T	.	PASS	NT=ref;QSS=23;QSS_NT=23;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER||||588|HDAC9|protein_coding|CODING|ENST00000417496||1),UPSTREAM(MODIFIER|||||HDAC9|retained_intron|CODING|ENST00000455069||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	48:1:0:0:0,0:0,1:47,47:0,0	80:4:0:0:0,0:0,1:70,74:6,6
7	19642617	.	C	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:1:0:0:1,1:35,36:0,0:0,0	79:3:0:0:0,0:71,74:0,0:5,5
7	20708457	.	G	A	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=DOWNSTREAM(MODIFIER||||126|ABCB5|protein_coding|CODING|ENST00000406935||1),INTRON(MODIFIER||||1257|ABCB5|protein_coding|CODING|ENST00000404938|14|1),INTRON(MODIFIER||||812|ABCB5|protein_coding|CODING|ENST00000258738|5|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:9:0:0:0,1:0,2:27,40:0,0	40:5:0:0:9,12:0,0:26,48:0,0
7	20852049	.	G	A	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:0:0:0:0,0:0,0:36,36:0,0	79:1:0:0:10,10:0,0:68,68:0,0
7	22041185	.	G	A	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:0:0:0:0,0:0,0:35,35:0,0	73:2:0:0:8,8:0,0:63,64:0,1
7	23086024	.	T	C	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	43:4:0:0:0,0:0,0:3,4:36,39	58:11:0:0:0,0:4,6:3,7:40,50
7	23086034	.	C	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	42:3:0:0:0,0:38,41:1,1:0,0	62:10:0:0:0,0:48,59:0,4:4,4
7	23555442	.	G	A	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||TRA2A|nonsense_mediated_decay|CODING|ENST00000448549||1),INTRON(MODIFIER||||180|TRA2A|protein_coding|CODING|ENST00000392502|5|1),INTRON(MODIFIER||||181|TRA2A|protein_coding|CODING|ENST00000538367|4|1),INTRON(MODIFIER||||282|TRA2A|protein_coding|CODING|ENST00000297071|3|1),INTRON(MODIFIER|||||TRA2A|processed_transcript|CODING|ENST00000474586|3|1),INTRON(MODIFIER|||||TRA2A|processed_transcript|CODING|ENST00000490942|4|1),INTRON(MODIFIER|||||TRA2A|retained_intron|CODING|ENST00000494255|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:0:0:0:0,0:0,0:37,37:0,0	79:0:0:0:5,6:0,0:74,76:0,0
7	23631613	.	C	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:1:0:0:0,0:30,31:0,0:0,0	88:4:0:0:0,0:78,81:1,1:5,7
7	25442344	.	A	T	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=AA->AT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	43:0:0:0:43,43:0,0:0,0:0,0	87:2:0:0:81,83:0,0:0,0:4,4
7	25820252	.	C	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:0:0:0:0,0:29,29:0,0:0,0	82:2:0:0:0,0:74,76:6,6:0,0
7	27975726	.	C	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||157|JAZF1|protein_coding|CODING|ENST00000420835|2|1),INTRON(MODIFIER||||172|JAZF1|protein_coding|CODING|ENST00000430432|2|1),INTRON(MODIFIER||||180|JAZF1|protein_coding|CODING|ENST00000447620|2|1),INTRON(MODIFIER||||243|JAZF1|protein_coding|CODING|ENST00000283928|2|1),INTRON(MODIFIER|||||JAZF1|nonsense_mediated_decay|CODING|ENST00000452993|2|1),INTRON(MODIFIER|||||JAZF1|nonsense_mediated_decay|CODING|ENST00000454041|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:1:0:0:0,0:29,30:0,0:0,0	91:1:0:0:0,0:86,87:0,0:4,4
7	28094797	.	T	A	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||172|JAZF1|protein_coding|CODING|ENST00000430432|1|1),INTRON(MODIFIER||||243|JAZF1|protein_coding|CODING|ENST00000283928|1|1),INTRON(MODIFIER|||||JAZF1|nonsense_mediated_decay|CODING|ENST00000452993|1|1),INTRON(MODIFIER|||||JAZF1|nonsense_mediated_decay|CODING|ENST00000454041|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:0:0:0:0,0:0,0:0,0:37,37	74:2:0:0:5,6:0,0:0,0:67,68
7	29252571	rs199644616	C	G	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=EXON(MODIFIER|||||AC004593.2|processed_pseudogene|NON_CODING|ENST00000427230|1|1),INTRON(MODIFIER||||173|CHN2|protein_coding|CODING|ENST00000409350|1|1),INTRON(MODIFIER||||186|CHN2|protein_coding|CODING|ENST00000439384|2|1),INTRON(MODIFIER||||192|CHN2|protein_coding|CODING|ENST00000435288|1|1),INTRON(MODIFIER||||324|CHN2|protein_coding|CODING|ENST00000539389|1|1),INTRON(MODIFIER||||453|CHN2|protein_coding|CODING|ENST00000546235|1|1),INTRON(MODIFIER||||468|CHN2|protein_coding|CODING|ENST00000222792|1|1),INTRON(MODIFIER||||481|CHN2|protein_coding|CODING|ENST00000495789|1|1),INTRON(MODIFIER||||543|CHN2|protein_coding|CODING|ENST00000539406|2|1),INTRON(MODIFIER|||||CHN2|processed_transcript|CODING|ENST00000409964|1|1),UPSTREAM(MODIFIER|||||AC004593.3|antisense|NON_CODING|ENST00000446246||1);RSPOS=29252571;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000080005040002000100;WGT=1;VC=SNV;INT;ASP;VLD;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:1:0:0:0,0:35,36:0,0:0,0	65:0:0:0:0,0:60,65:5,5:0,0
7	29794358	.	T	C	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:0:0:0:0,0:0,0:0,0:40,40	72:1:0:0:0,0:5,5:0,0:66,67
7	30026036	.	A	G	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||140|SCRN1|protein_coding|CODING|ENST00000409570|1|1),INTRON(MODIFIER||||244|SCRN1|protein_coding|CODING|ENST00000421434|1|1),INTRON(MODIFIER||||346|SCRN1|protein_coding|CODING|ENST00000425819|1|1),INTRON(MODIFIER||||414|SCRN1|protein_coding|CODING|ENST00000242059|1|1),INTRON(MODIFIER||||414|SCRN1|protein_coding|CODING|ENST00000426154|1|1),INTRON(MODIFIER||||434|SCRN1|protein_coding|CODING|ENST00000434476|1|1),INTRON(MODIFIER|||||SCRN1|processed_transcript|CODING|ENST00000494620|1|1),UPSTREAM(MODIFIER|||||AC007285.6|antisense|NON_CODING|ENST00000419103||1),UPSTREAM(MODIFIER|||||AC007285.6|antisense|NON_CODING|ENST00000422239||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:0:0:0:36,36:1,1:0,0:0,0	79:1:0:0:73,74:0,0:5,5:0,0
7	30091509	.	A	G	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||PLEKHA8|processed_transcript|CODING|ENST00000483799||1),DOWNSTREAM(MODIFIER|||||PLEKHA8|retained_intron|CODING|ENST00000498106||1),INTRON(MODIFIER||||439|PLEKHA8|protein_coding|CODING|ENST00000396259|6|1),INTRON(MODIFIER||||440|PLEKHA8|protein_coding|CODING|ENST00000258679|6|1),INTRON(MODIFIER||||455|PLEKHA8|protein_coding|CODING|ENST00000396257|6|1),INTRON(MODIFIER||||519|PLEKHA8|protein_coding|CODING|ENST00000449726|6|1),INTRON(MODIFIER||||545|PLEKHA8|protein_coding|CODING|ENST00000440706|6|1),INTRON(MODIFIER|||||PLEKHA8|nonsense_mediated_decay|CODING|ENST00000429020|6|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:0:0:0:38,38:0,0:0,0:0,0	68:0:0:0:60,60:1,1:7,7:0,0
7	30316578	.	C	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->AC;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:0:0:0:0,0:30,30:0,0:0,0	85:1:0:0:4,4:80,82:0,0:0,0
7	31709559	.	G	T	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:0:0:0:0,0:0,0:34,34:0,0	80:1:0:0:0,1:0,0:69,69:10,10
7	32249091	.	A	G	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||769|PDE1C|protein_coding|CODING|ENST00000396193|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:1:0:0:33,34:0,0:0,0:0,0	83:0:0:0:79,79:0,0:4,4:0,0
7	32348220	.	C	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:1:0:0:0,0:36,42:0,0:0,0	86:0:0:0:0,0:80,83:0,0:6,6
7	32633586	.	A	T	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||463|AVL9|protein_coding|CODING|ENST00000404479|10|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	44:0:0:0:44,44:0,0:0,0:0,0	78:1:0:0:72,73:0,0:0,0:5,5
7	33915495	.	C	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||RP11-89N17.3|lincRNA|NON_CODING|ENST00000440074||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	26:1:0:0:0,0:25,26:0,0:0,0	90:2:0:0:11,12:77,78:0,0:0,0
7	33963182	.	T	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||BMPER|nonsense_mediated_decay|CODING|ENST00000448280||1),INTRON(MODIFIER||||158|BMPER|protein_coding|CODING|ENST00000436222|2|1),INTRON(MODIFIER||||685|BMPER|protein_coding|CODING|ENST00000297161|3|1),INTRON(MODIFIER||||685|BMPER|protein_coding|CODING|ENST00000426693|2|1),INTRON(MODIFIER|||||BMPER|nonsense_mediated_decay|CODING|ENST00000444773|2|1),INTRON(MODIFIER|||||BMPER|retained_intron|CODING|ENST00000496609|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:0:0:0:0,0:0,0:0,0:33,33	80:1:0:0:6,7:0,0:0,0:73,73
7	34367846	rs191240719	C	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=34367846;GMAF=0.0023;dbSNPBuildID=135;SSR=0;SAO=0;VP=050000000005000016000100;WGT=1;VC=SNV;ASP;KGPhase1;KGPROD;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:1:0:0:0,0:34,35:1,1:0,0	80:1:0:0:0,0:71,71:0,0:8,9
7	34775270	.	T	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||143|NPSR1|protein_coding|CODING|ENST00000381553|2|1),INTRON(MODIFIER||||305|NPSR1|protein_coding|CODING|ENST00000381542|2|1),INTRON(MODIFIER||||366|NPSR1|protein_coding|CODING|ENST00000531252|2|1),INTRON(MODIFIER||||371|NPSR1|protein_coding|CODING|ENST00000360581|2|1),INTRON(MODIFIER||||377|NPSR1|protein_coding|CODING|ENST00000359791|2|1),INTRON(MODIFIER||||390|NPSR1|protein_coding|CODING|ENST00000381539|2|1),INTRON(MODIFIER|||||NPSR1-AS1|processed_transcript|NON_CODING|ENST00000358772|1|1),INTRON(MODIFIER|||||NPSR1-AS1|processed_transcript|NON_CODING|ENST00000419766|1|1),INTRON(MODIFIER|||||NPSR1-AS1|processed_transcript|NON_CODING|ENST00000431669|2|1),INTRON(MODIFIER|||||NPSR1-AS1|processed_transcript|NON_CODING|ENST00000436945|2|1),INTRON(MODIFIER|||||NPSR1-AS1|processed_transcript|NON_CODING|ENST00000439852|1|1),INTRON(MODIFIER|||||NPSR1-AS1|processed_transcript|NON_CODING|ENST00000442669|2|1),INTRON(MODIFIER|||||NPSR1-AS1|processed_transcript|NON_CODING|ENST00000535640|2|1),INTRON(MODIFIER|||||NPSR1-AS1|processed_transcript|NON_CODING|ENST00000537560|1|1),INTRON(MODIFIER|||||NPSR1-AS1|processed_transcript|NON_CODING|ENST00000539747|1|1),INTRON(MODIFIER|||||NPSR1-AS1|processed_transcript|NON_CODING|ENST00000544556|1|1),INTRON(MODIFIER|||||NPSR1-AS1|retained_intron|NON_CODING|ENST00000428922|1|1),INTRON(MODIFIER|||||NPSR1|nonsense_mediated_decay|CODING|ENST00000381544|2|1),INTRON(MODIFIER|||||NPSR1|nonsense_mediated_decay|CODING|ENST00000396095|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:0:0:0:0,0:0,0:0,0:29,29	87:0:0:0:10,10:0,0:0,0:77,77
7	34920926	.	T	C	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||366|NPSR1|protein_coding|CODING|ENST00000531252||1),DOWNSTREAM(MODIFIER||||377|NPSR1|protein_coding|CODING|ENST00000359791||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:0:0:0:0,0:0,0:0,0:40,40	85:2:0:0:0,0:8,9:0,0:75,77
7	35084402	.	C	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	24:3:0:0:0,0:21,54:0,0:0,2	43:7:0:0:0,0:30,69:0,1:6,17
7	35414193	.	A	T	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	42:1:0:0:41,42:0,0:0,0:0,0	86:5:0:0:75,79:2,2:0,0:4,5
7	36963255	.	A	G	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||247|ELMO1|protein_coding|CODING|ENST00000396040|1|1),INTRON(MODIFIER||||247|ELMO1|protein_coding|CODING|ENST00000396045|1|1),INTRON(MODIFIER||||429|ELMO1|protein_coding|CODING|ENST00000341056|4|1),INTRON(MODIFIER||||727|ELMO1|protein_coding|CODING|ENST00000310758|16|1),INTRON(MODIFIER||||727|ELMO1|protein_coding|CODING|ENST00000442504|16|1),INTRON(MODIFIER||||727|ELMO1|protein_coding|CODING|ENST00000448602|16|1),INTRON(MODIFIER|||||ELMO1|nonsense_mediated_decay|CODING|ENST00000420636|7|1),INTRON(MODIFIER|||||ELMO1|processed_transcript|CODING|ENST00000464262|1|1),INTRON(MODIFIER|||||ELMO1|processed_transcript|CODING|ENST00000472359|4|1),INTRON(MODIFIER|||||ELMO1|processed_transcript|CODING|ENST00000487843|1|1),UPSTREAM(MODIFIER|||||MIR1200|miRNA|NON_CODING|ENST00000408398||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:0:0:0:35,35:0,0:0,0:0,0	90:0:0:0:86,87:0,0:4,4:0,0
7	37613299	.	T	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:0:0:0:0,0:0,0:0,0:29,30	81:1:0:0:0,0:7,7:0,0:73,74
7	37926267	.	A	G	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||122|EPDR1|protein_coding|CODING|ENST00000476620|2|1),INTRON(MODIFIER||||588|NME8|protein_coding|CODING|ENST00000199447|14|1),INTRON(MODIFIER||||588|NME8|protein_coding|CODING|ENST00000440017|13|1),INTRON(MODIFIER|||||NME8|nonsense_mediated_decay|CODING|ENST00000426106|4|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:0:0:0:39,39:0,0:0,0:0,0	83:0:0:0:78,79:0,0:5,6:0,0
7	38081682	.	C	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:0:0:0:0,0:31,31:0,0:0,0	78:0:0:0:5,5:73,73:0,0:0,0
7	39818558	.	G	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||LINC00265|processed_transcript|NON_CODING|ENST00000340510|3|1),UPSTREAM(MODIFIER|||||LINC00265|retained_intron|NON_CODING|ENST00000448955||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:2:0:0:0,0:0,0:29,30:0,1	58:1:0:0:5,5:0,0:52,54:0,0
7	41112384	.	T	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:3:0:0:0,1:0,0:0,0:31,33	99:4:0:0:0,0:4,4:0,1:91,93
7	41300760	.	G	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:0:0:0:0,0:0,0:28,28:1,1	70:1:0:0:4,4:0,0:65,66:0,0
7	41407036	.	T	C	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:0:0:0:0,0:0,0:0,0:33,33	82:0:0:0:0,0:10,10:2,2:70,70
7	41715395	.	T	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||AC005027.3|processed_transcript|NON_CODING|ENST00000416150|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	27:0:0:0:0,0:0,0:0,0:27,28	84:0:0:0:0,0:6,6:0,0:78,78
7	41989141	.	G	A	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	42:1:0:0:0,0:0,0:41,42:0,0	85:2:0:0:6,6:0,0:77,79:0,0
7	42072863	.	C	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1580|GLI3|protein_coding|CODING|ENST00000395925|7|1),INTRON(MODIFIER|||||GLI3|processed_transcript|CODING|ENST00000479210|6|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:0:0:0:0,0:36,36:0,0:0,0	69:0:0:0:4,4:65,65:0,0:0,0
7	42527439	rs34608332	T	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=42527439;dbSNPBuildID=126;SSR=0;SAO=0;VP=050000000001000002000100;WGT=1;VC=SNV;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:3:0:0:0,0:0,0:0,0:30,33	55:1:0:0:5,5:0,0:0,0:49,50
7	44010034	.	G	A	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||AC004985.12|unprocessed_pseudogene|NON_CODING|ENST00000418645|2|1),INTRON(MODIFIER|||||POLR2J4|processed_transcript|NON_CODING|ENST00000422304|8|1),INTRON(MODIFIER|||||POLR2J4|processed_transcript|NON_CODING|ENST00000427076|9|1),INTRON(MODIFIER|||||POLR2J4|processed_transcript|NON_CODING|ENST00000454572|5|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:2:0:0:0,0:0,0:30,35:0,0	56:3:0:0:7,7:0,0:46,50:0,0
7	44291831	.	C	A	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||167|CAMK2B|protein_coding|CODING|ENST00000424197|5|1),INTRON(MODIFIER||||172|CAMK2B|protein_coding|CODING|ENST00000415369|5|1),INTRON(MODIFIER||||179|CAMK2B|protein_coding|CODING|ENST00000421607|5|1),INTRON(MODIFIER||||305|CAMK2B|protein_coding|CODING|ENST00000502837|3|1),INTRON(MODIFIER||||449|CAMK2B|protein_coding|CODING|ENST00000346990|5|1),INTRON(MODIFIER||||479|CAMK2B|protein_coding|CODING|ENST00000353625|5|1),INTRON(MODIFIER||||492|CAMK2B|protein_coding|CODING|ENST00000347193|5|1),INTRON(MODIFIER||||503|CAMK2B|protein_coding|CODING|ENST00000358707|5|1),INTRON(MODIFIER||||517|CAMK2B|protein_coding|CODING|ENST00000258682|5|1),INTRON(MODIFIER||||518|CAMK2B|protein_coding|CODING|ENST00000395747|5|1),INTRON(MODIFIER||||518|CAMK2B|protein_coding|CODING|ENST00000457475|5|1),INTRON(MODIFIER||||542|CAMK2B|protein_coding|CODING|ENST00000350811|5|1),INTRON(MODIFIER||||542|CAMK2B|protein_coding|CODING|ENST00000440254|5|1),INTRON(MODIFIER||||666|CAMK2B|protein_coding|CODING|ENST00000395749|5|1),INTRON(MODIFIER|||||CAMK2B|nonsense_mediated_decay|CODING|ENST00000353185|5|1),INTRON(MODIFIER|||||CAMK2B|nonsense_mediated_decay|CODING|ENST00000523845|3|1),INTRON(MODIFIER|||||CAMK2B|processed_transcript|CODING|ENST00000462128|5|1),INTRON(MODIFIER|||||CAMK2B|processed_transcript|CODING|ENST00000470984|5|1),INTRON(MODIFIER|||||CAMK2B|processed_transcript|CODING|ENST00000484972|4|1),INTRON(MODIFIER|||||CAMK2B|processed_transcript|CODING|ENST00000495819|5|1),INTRON(MODIFIER|||||CAMK2B|processed_transcript|CODING|ENST00000497127|3|1),INTRON(MODIFIER|||||CAMK2B|processed_transcript|CODING|ENST00000497584|5|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:0:0:0:0,0:34,35:0,0:0,0	75:2:0:0:9,13:64,76:0,0:0,0
7	44711168	.	C	A	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||210|OGDH|protein_coding|CODING|ENST00000419661||1),INTRON(MODIFIER||||1019|OGDH|protein_coding|CODING|ENST00000449767|5|1),INTRON(MODIFIER||||1023|OGDH|protein_coding|CODING|ENST00000222673|5|1),INTRON(MODIFIER||||1034|OGDH|protein_coding|CODING|ENST00000447398|6|1),INTRON(MODIFIER||||1038|OGDH|protein_coding|CODING|ENST00000444676|6|1),INTRON(MODIFIER||||427|OGDH|protein_coding|CODING|ENST00000443864|5|1),INTRON(MODIFIER||||873|OGDH|protein_coding|CODING|ENST00000439616|3|1),INTRON(MODIFIER||||974|OGDH|protein_coding|CODING|ENST00000543843|5|1),INTRON(MODIFIER|||||OGDH|processed_transcript|CODING|ENST00000459672|1|1),INTRON(MODIFIER|||||OGDH|retained_intron|CODING|ENST00000497326|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:0:0:0:0,0:38,38:0,0:0,0	76:0:0:0:8,10:68,68:0,0:0,0
7	45852868	.	C	G	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||AC096582.10|processed_pseudogene|NON_CODING|ENST00000443330||1),INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||AC096582.8|unprocessed_pseudogene|NON_CODING|ENST00000413839||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:3:0:0:0,0:32,35:0,0:0,0	72:8:0:0:1,1:56,64:7,8:0,0
7	45853477	.	T	C	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||AC096582.10|processed_pseudogene|NON_CODING|ENST00000443330||1),INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||AC096582.8|unprocessed_pseudogene|NON_CODING|ENST00000413839||1),UPSTREAM(MODIFIER|||||AC096582.9|unprocessed_pseudogene|NON_CODING|ENST00000510860||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	41:2:0:0:0,0:0,0:0,1:39,41	76:5:0:0:0,0:7,11:1,1:63,65
7	46416890	.	A	G	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:0:0:0:33,33:0,0:0,0:0,0	94:1:0:0:85,86:0,0:7,8:1,1
7	47535740	.	G	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||113|TNS3|protein_coding|CODING|ENST00000434451|4|1),INTRON(MODIFIER||||1205|TNS3|protein_coding|CODING|ENST00000355730|3|1),INTRON(MODIFIER||||1248|TNS3|protein_coding|CODING|ENST00000457718|3|1),INTRON(MODIFIER||||1445|TNS3|protein_coding|CODING|ENST00000311160|3|1),INTRON(MODIFIER||||1445|TNS3|protein_coding|CODING|ENST00000398879|3|1),INTRON(MODIFIER||||250|TNS3|protein_coding|CODING|ENST00000442536|3|1),INTRON(MODIFIER||||250|TNS3|protein_coding|CODING|ENST00000458317|3|1),INTRON(MODIFIER||||543|TNS3|protein_coding|CODING|ENST00000450444|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	45:0:0:0:1,1:0,0:44,44:0,0	86:1:0:0:5,5:0,0:80,81:0,0
7	49753781	.	G	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:0:0:0:0,0:0,0:33,33:0,0	86:0:0:0:0,0:0,0:80,80:6,6
7	49878985	.	A	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||325|VWC2|protein_coding|CODING|ENST00000340652|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:0:0:0:33,33:0,0:0,0:0,0	83:0:0:0:76,76:7,7:0,0:0,0
7	49879683	.	T	G	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||325|VWC2|protein_coding|CODING|ENST00000340652|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:0:0:0:0,0:0,0:0,0:31,31	95:1:0:0:0,0:0,0:6,6:88,89
7	50088904	.	G	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||350|ZPBP|protein_coding|CODING|ENST00000419417|4|1),INTRON(MODIFIER||||351|ZPBP|protein_coding|CODING|ENST00000046087|4|1),INTRON(MODIFIER|||||ZPBP|processed_transcript|CODING|ENST00000491129|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:1:0:0:0,0:0,1:32,32:0,0	71:0:0:0:5,5:0,0:66,67:0,0
7	50610851	.	C	T	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||15|DDC|protein_coding|CODING|ENST00000432526||1),DOWNSTREAM(MODIFIER||||29|DDC|protein_coding|CODING|ENST00000420203||1),EXON(MODIFIER|||||AC018705.5|antisense|NON_CODING|ENST00000454521|5|1),INTRON(MODIFIER||||338|DDC|protein_coding|CODING|ENST00000380984|2|1),INTRON(MODIFIER||||387|DDC|protein_coding|CODING|ENST00000431062|1|1),INTRON(MODIFIER||||402|DDC|protein_coding|CODING|ENST00000426377|2|1),INTRON(MODIFIER||||480|DDC|protein_coding|CODING|ENST00000357936|2|1),INTRON(MODIFIER||||480|DDC|protein_coding|CODING|ENST00000444124|2|1),INTRON(MODIFIER|||||DDC|nonsense_mediated_decay|CODING|ENST00000444733|2|1),UPSTREAM(MODIFIER|||||DDC|processed_transcript|CODING|ENST00000489162||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:0:0:0:0,0:38,38:0,0:0,0	78:1:0:0:0,0:72,73:0,0:5,5
7	50892386	.	C	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:0:0:0:0,0:31,31:0,0:0,0	79:2:0:0:0,0:71,73:0,0:6,6
7	50979550	.	A	G	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP4-724E13.2|antisense|NON_CODING|ENST00000420449|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	41:2:0:0:38,40:1,1:0,0:0,0	65:1:0:0:56,57:0,0:8,8:0,0
7	51049680	.	T	C	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP4-724E13.2|antisense|NON_CODING|ENST00000420449|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:2:0:0:0,0:0,0:0,0:38,40	76:0:0:0:0,0:8,8:0,0:68,69
7	51436980	.	A	T	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:1:0:0:39,39:0,1:0,0:0,0	86:0:0:0:78,78:0,0:0,0:8,8
7	51482501	.	G	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	26:0:0:0:0,0:1,1:25,25:0,0	69:1:0:0:0,0:0,0:58,59:10,10
7	51879399	.	G	C	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:0:0:0:0,0:0,0:38,38:0,0	83:0:0:0:0,0:6,6:76,76:1,1
7	52976469	.	A	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	28:0:0:0:28,28:0,0:0,0:0,0	83:2:0:0:75,78:0,0:0,0:6,6
7	53262232	.	T	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:2:0:0:0,0:0,0:0,0:29,31	84:0:0:0:0,0:5,5:0,0:79,79
7	54206122	.	G	T	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:1:0:0:0,0:0,0:33,34:0,0	56:0:0:0:0,0:0,0:49,50:7,7
7	54307579	.	G	A	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	43:0:0:0:0,0:0,0:43,43:0,0	71:0:0:0:5,5:0,0:66,66:0,0
7	55318282	.	C	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||RP11-339F13.2|processed_pseudogene|NON_CODING|ENST00000425993||1),INTRON(MODIFIER||||657|EGFR|protein_coding|CODING|ENST00000442591|17|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:2:0:0:0,0:28,30:0,0:0,0	82:0:0:0:0,0:77,77:5,5:0,0
7	55808384	.	A	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=DOWNSTREAM(MODIFIER|||||CICP11|processed_pseudogene|NON_CODING|ENST00000434745||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	41:0:0:0:41,42:0,0:0,2:0,0	78:0:0:0:73,73:0,0:5,11:0,0
7	55975828	rs140697595	G	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||225|RP11-15K19.2|protein_coding|CODING|ENST00000426595|2|1),INTRON(MODIFIER|||||ZNF713|nonsense_mediated_decay|CODING|ENST00000411863|2|1),INTRON(MODIFIER|||||ZNF713|retained_intron|CODING|ENST00000466630|2|1),INTRON(MODIFIER|||||ZNF713|retained_intron|CODING|ENST00000484120|1|1),UPSTREAM(MODIFIER||||430|ZNF713|protein_coding|CODING|ENST00000429591||1),UPSTREAM(MODIFIER|||||ZNF713|processed_transcript|CODING|ENST00000482436||1);RSPOS=55975828;dbSNPBuildID=134;SSR=0;SAO=0;VP=050000000015000002000100;WGT=1;VC=SNV;OTH;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	26:0:10:0:0,0:0,0:26,26:0,0	58:1:25:0:0,0:0,0:51,52:6,7
7	56003633	.	G	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||225|RP11-15K19.2|protein_coding|CODING|ENST00000426595|6|1),INTRON(MODIFIER||||430|ZNF713|protein_coding|CODING|ENST00000429591|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:1:0:0:0,0:0,0:34,35:0,0	72:1:0:0:5,5:0,1:66,66:0,0
7	56163593	.	A	G	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER||||116|PHKG1|protein_coding|CODING|ENST00000446428||1),UPSTREAM(MODIFIER||||144|PHKG1|protein_coding|CODING|ENST00000432123||1),UPSTREAM(MODIFIER||||333|PHKG1|protein_coding|CODING|ENST00000537360||1),UPSTREAM(MODIFIER||||387|PHKG1|protein_coding|CODING|ENST00000297373||1),UPSTREAM(MODIFIER||||419|PHKG1|protein_coding|CODING|ENST00000452681||1),UPSTREAM(MODIFIER|||||PHKG1|nonsense_mediated_decay|CODING|ENST00000395428||1),UPSTREAM(MODIFIER|||||PHKG1|processed_transcript|CODING|ENST00000489604||1),UPSTREAM(MODIFIER|||||PHKG1|retained_intron|CODING|ENST00000467726||1),UPSTREAM(MODIFIER|||||PHKG1|retained_intron|CODING|ENST00000492124||1),UPSTREAM(MODIFIER|||||snoU13|snoRNA|NON_CODING|ENST00000458988||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:1:0:0:28,30:0,0:1,1:0,0	70:4:0:0:54,57:0,1:12,14:0,0
7	56686410	.	C	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	28:2:0:0:0,0:26,26:0,0:0,2	76:0:0:0:11,11:64,64:0,0:1,1
7	56894600	.	A	T	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	43:2:0:0:39,41:1,1:1,2:0,0	88:3:0:0:81,87:0,0:0,0:4,5
7	57400230	.	C	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	28:0:0:0:0,0:28,28:0,0:0,0	65:2:0:0:4,4:59,61:0,0:0,0
7	57618317	.	G	C	.	PASS	NT=ref;QSS=24;QSS_NT=24;SGT=GG->CG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	27:0:0:0:0,0:0,1:27,27:0,0	83:1:0:0:0,0:17,22:65,65:0,1
7	57691052	.	G	A	.	PASS	NT=ref;QSS=36;QSS_NT=36;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-368M16.3|unprocessed_pseudogene|NON_CODING|ENST00000511350|1|1),UPSTREAM(MODIFIER|||||RP11-368M16.2|unprocessed_pseudogene|NON_CODING|ENST00000436522||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	75:2:0:0:0,2:0,0:73,94:0,0	181:1:0:0:17,25:0,0:163,240:0,0
7	57691075	.	T	C	.	PASS	NT=ref;QSS=26;QSS_NT=26;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-368M16.3|unprocessed_pseudogene|NON_CODING|ENST00000511350|1|1),UPSTREAM(MODIFIER|||||RP11-368M16.2|unprocessed_pseudogene|NON_CODING|ENST00000436522||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	54:1:0:0:0,0:0,1:0,0:53,72	152:0:0:0:0,0:12,18:0,0:140,211
7	57698450	.	G	A	.	PASS	NT=ref;QSS=25;QSS_NT=25;SGT=GG->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=EXON(MODIFIER|||||RP11-368M16.4|processed_pseudogene|NON_CODING|ENST00000436076|1|1),UPSTREAM(MODIFIER|||||RP11-368M16.3|unprocessed_pseudogene|NON_CODING|ENST00000511350||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	66:3:0:0:0,3:0,0:63,75:0,0	181:6:0:0:8,15:1,1:166,196:0,0
7	57699872	.	G	A	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||RP11-368M16.4|processed_pseudogene|NON_CODING|ENST00000436076||1),INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||RP11-368M16.3|unprocessed_pseudogene|NON_CODING|ENST00000511350||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:2:0:0:0,0:0,0:35,38:0,0	95:6:0:0:9,10:1,1:79,96:0,0
7	57731961	.	C	T	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	46:0:0:0:0,0:46,54:0,0:0,0	122:3:0:0:0,0:114,139:0,1:5,6
7	57734047	rs200590438	C	A	.	PASS	NT=ref;QSS=28;QSS_NT=28;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=57734047;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	74:1:0:0:1,1:72,81:0,0:0,0	208:6:0:0:16,19:186,213:0,0:0,0
7	57739036	rs76554846	G	A	.	PASS	NT=ref;QSS=26;QSS_NT=26;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=57739036;dbSNPBuildID=131;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	64:1:0:0:0,1:0,0:63,65:0,0	120:0:0:0:6,8:0,0:114,123:0,0
7	57739090	.	G	A	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	54:1:0:0:0,1:0,0:53,56:0,0	127:1:0:0:6,8:0,0:120,126:0,0
7	57751010	rs12164068	G	A	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=57751010;dbSNPBuildID=120;SSR=0;SAO=0;VP=050100000005040102000100;WGT=1;VC=SNV;SLO;ASP;VLD;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:4:0:0:0,0:0,0:33,37:0,0	79:2:0:0:7,8:0,0:70,74:0,1
7	57751014	.	A	G	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:4:0:0:32,35:0,0:0,0:0,1	80:2:0:0:71,76:0,0:7,8:0,0
7	57751827	rs151123408	C	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=57751827;dbSNPBuildID=134;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:3:0:0:0,0:35,39:0,0:0,0	124:1:0:0:0,0:110,111:0,0:13,17
7	57763280	rs201282681	T	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=57763280;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:0:0:0:0,0:0,0:0,0:36,36	87:1:0:0:0,0:0,0:5,8:81,82
7	57764207	rs6972984	G	A	.	PASS	NT=ref;QSS=32;QSS_NT=32;SGT=GG->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=57764207;dbSNPBuildID=116;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	44:0:0:0:0,2:0,0:44,44:0,0	96:1:0:0:19,23:0,0:76,77:0,0
7	57764208	.	T	C	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	43:0:0:0:0,0:0,0:0,0:43,45	95:0:0:0:0,0:8,9:0,0:87,90
7	57769403	.	A	G	.	PASS	NT=ref;QSS=25;QSS_NT=25;SGT=AA->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	66:1:0:0:65,74:0,0:0,1:0,0	161:1:0:0:153,178:0,0:7,8:0,0
7	57774883	.	A	C	.	PASS	NT=ref;QSS=26;QSS_NT=26;SGT=AA->AC;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	73:3:0:0:69,74:1,2:0,0:0,0	147:3:0:0:136,146:8,14:0,0:0,0
7	57782906	rs76928268	G	T	.	PASS	NT=ref;QSS=27;QSS_NT=27;SGT=GG->GT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=57782906;dbSNPBuildID=131;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:1:0:0:0,0:0,0:35,36:0,1	90:0:0:0:0,0:0,0:73,73:17,23
7	57869257	rs202233460	A	G	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=57869257;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:0:0:0:34,34:0,0:0,0:0,0	82:0:0:0:73,73:1,1:8,9:0,0
7	57876392	.	T	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||RP11-548K12.2|unprocessed_pseudogene|NON_CODING|ENST00000419418||1),DOWNSTREAM(MODIFIER|||||RP11-548K12.3|unprocessed_pseudogene|NON_CODING|ENST00000458734||1),INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||RP11-548K12.10|unprocessed_pseudogene|NON_CODING|ENST00000436698||1),UPSTREAM(MODIFIER|||||RP11-548K12.9|unprocessed_pseudogene|NON_CODING|ENST00000508864||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:0:0:0:0,0:0,0:0,0:30,30	106:0:0:0:0,0:7,8:0,0:99,99
7	57914778	rs200524845	G	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=57914778;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	82:3:0:0:1,2:1,1:77,87:0,0	181:4:0:0:0,1:6,6:171,187:0,0
7	57917202	.	G	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	45:2:0:0:0,0:0,0:43,62:0,0	141:3:0:0:7,9:0,0:131,164:0,0
7	57918220	.	T	G	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	59:3:0:0:0,0:0,0:0,0:56,88	148:7:0:0:0,0:0,0:7,11:134,215
7	57918230	.	C	G	.	PASS	NT=ref;QSS=34;QSS_NT=34;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	72:1:0:0:0,0:71,107:0,0:0,0	171:1:0:0:0,0:161,261:9,14:0,0
7	57918650	rs73697633	A	G	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=57918650;dbSNPBuildID=130;SSR=0;SAO=0;VP=050100000005000502000100;WGT=1;VC=SNV;SLO;ASP;HD;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	44:2:0:0:42,45:0,0:0,1:0,0	115:1:0:0:102,105:0,0:12,20:0,0
7	57918699	rs200318314	T	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->AT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=57918699;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	48:3:0:0:0,2:0,1:0,0:45,54	120:3:0:0:9,16:0,0:0,0:108,127
7	57937900	.	A	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	59:4:0:0:54,63:0,0:1,1:0,0	110:2:0:0:101,124:0,0:1,3:6,8
7	57974194	.	A	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:1:0:0:39,40:0,0:0,0:0,0	84:0:0:0:77,77:0,0:1,1:6,10
7	57998803	.	C	T	.	PASS	NT=ref;QSS=24;QSS_NT=24;SGT=CC->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	62:11:0:0:0,0:51,74:0,0:0,3	121:20:0:0:0,1:91,141:0,0:10,17
7	57998857	.	T	C	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=TT->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	51:11:0:0:0,0:0,3:0,0:40,64	107:10:0:0:0,0:10,15:2,2:85,130
7	58037579	.	T	C	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	59:6:0:0:0,0:0,3:1,2:52,90	140:19:0:0:0,0:5,14:0,1:116,223
7	58037590	.	T	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	65:14:0:0:0,0:0,0:0,0:51,110	157:34:0:0:0,0:5,10:1,1:117,278
7	58037595	.	C	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	64:16:0:0:0,0:48,110:0,0:0,3	161:38:0:0:0,0:116,273:0,0:7,27
7	58039342	rs112621494	C	A	.	PASS	NT=ref;QSS=23;QSS_NT=23;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=58039342;dbSNPBuildID=132;SSR=0;SAO=0;VP=050100000001000102000100;WGT=1;VC=SNV;SLO;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	69:6:0:0:1,4:61,129:0,0:1,1	163:20:1:0:9,29:132,299:1,1:1,1
7	61059657	.	T	C	.	PASS	NT=ref;QSS=24;QSS_NT=24;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	51:4:0:0:0,0:0,0:0,0:47,75	127:3:0:0:0,0:8,12:1,1:115,170
7	61073394	.	G	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->GT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	62:1:0:0:1,1:0,0:59,74:1,1	131:1:0:0:0,0:0,0:123,145:7,7
7	61075169	.	G	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->GT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	51:0:0:0:0,0:0,0:51,59:0,2	177:2:0:0:0,1:0,1:165,183:10,16
7	61085169	rs111612091	A	G	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=AA->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=61085169;dbSNPBuildID=132;SSR=0;SAO=0;VP=050100000005000102000100;WGT=1;VC=SNV;SLO;ASP;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	82:22:0:0:60,125:0,0:0,5:0,1	214:63:0:0:142,294:0,1:8,19:1,6
7	61085715	.	G	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	84:14:0:0:1,2:0,0:68,186:1,5	197:18:0:0:1,5:0,0:167,421:11,25
7	61238129	.	T	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=TT->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:0:0:0:0,0:0,1:0,0:34,59	79:0:0:0:0,0:10,14:0,0:69,128
7	61266560	.	A	C	.	PASS	NT=ref;QSS=25;QSS_NT=25;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	50:2:0:0:48,92:0,2:0,0:0,1	129:10:0:0:104,188:14,35:0,2:1,4
7	61740347	.	T	C	.	PASS	NT=ref;QSS=29;QSS_NT=29;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	87:12:8:0:0,1:1,4:0,0:74,181	243:49:13:0:0,7:12,20:0,1:182,402
7	61765271	.	C	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->AC;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	43:2:0:0:0,2:41,49:0,0:0,0	146:2:0:0:8,10:136,151:0,1:0,0
7	61769620	.	A	T	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=AA->AT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	54:1:0:0:53,54:0,0:0,0:0,3	82:3:0:0:71,76:0,0:0,0:8,13
7	61769626	.	A	G	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=AA->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	54:1:0:0:53,53:0,1:0,3:0,0	81:2:0:0:72,76:0,0:7,10:0,0
7	61781203	.	G	A	.	PASS	NT=ref;QSS=26;QSS_NT=26;SGT=GG->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	76:14:0:0:0,2:0,0:62,179:0,0	182:33:1:0:7,19:0,1:142,430:0,3
7	61783459	.	G	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	62:14:0:0:0,5:0,2:48,133:0,1	149:26:0:0:9,17:1,4:113,321:0,3
7	61815433	rs200769280	G	T	.	PASS	NT=ref;QSS=24;QSS_NT=24;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=61815433;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	57:0:0:0:0,0:0,0:57,57:0,0	171:1:0:0:1,1:1,1:159,160:9,10
7	61820899	.	T	C	.	PASS	NT=ref;QSS=23;QSS_NT=23;SGT=TT->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||RP11-715L17.1|processed_pseudogene|NON_CODING|ENST00000454392||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	52:3:0:0:0,0:0,1:0,0:49,58	118:14:0:0:0,0:9,20:1,1:94,122
7	61832296	.	T	C	.	PASS	NT=ref;QSS=32;QSS_NT=32;SGT=TT->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	72:1:0:0:0,0:0,3:0,1:71,90	187:1:0:0:0,0:10,12:0,0:176,233
7	61836223	rs148728053	C	A	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=61836223;dbSNPBuildID=134;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:1:0:0:0,0:35,36:0,0:0,0	98:2:0:0:5,7:91,97:0,0:0,1
7	61836228	rs146927587	G	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=61836228;dbSNPBuildID=134;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:2:0:0:0,0:0,0:35,37:0,0	97:1:0:0:0,1:5,7:91,97:0,0
7	61836754	.	T	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	76:0:0:0:0,0:0,0:0,0:76,89	204:2:0:0:0,0:8,10:0,1:194,223
7	61836803	.	A	G	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=AA->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	69:1:0:0:68,80:0,0:0,0:0,0	183:2:0:0:172,198:0,0:9,10:0,0
7	61878758	.	G	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->CG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	76:2:0:0:0,4:0,1:73,91:1,1	203:1:0:0:0,3:8,8:192,217:2,2
7	61916448	.	A	C	.	PASS	NT=ref;QSS=32;QSS_NT=32;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	66:2:0:0:64,66:0,0:0,0:0,0	155:0:0:0:148,150:7,7:0,0:0,0
7	61990615	.	C	G	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	69:18:0:0:0,2:50,118:1,4:0,2	183:52:0:0:0,7:124,279:6,9:1,9
7	61995693	rs200783753	A	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=61995693;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:2:0:0:30,32:0,0:0,0:0,0	82:2:0:0:75,77:0,0:5,5:0,0
7	62006479	.	C	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	55:1:0:0:1,2:52,117:0,0:1,9	114:3:0:0:1,1:103,230:2,2:5,24
7	62033022	.	A	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	67:14:0:0:53,132:0,6:0,2:0,0	158:33:0:0:118,271:5,13:0,5:2,10
7	62040011	.	T	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:1:0:0:0,0:0,0:0,0:33,36	71:1:0:0:5,12:0,0:0,0:65,72
7	62040020	rs143795970	C	A	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=62040020;dbSNPBuildID=134;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:1:0:0:0,0:37,40:0,0:0,0	67:1:0:0:5,13:61,66:0,0:0,1
7	62047652	.	T	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->AT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	61:11:0:0:0,5:0,1:0,0:50,118	222:30:0:0:9,21:0,1:1,1:182,373
7	62085471	.	T	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	45:0:0:0:0,0:0,0:0,0:45,45	87:0:0:0:0,0:5,5:0,0:82,83
7	62342172	rs112995387	C	T	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=CC->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=62342172;dbSNPBuildID=132;SSR=0;SAO=0;VP=050000000001000102000100;WGT=1;VC=SNV;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	41:0:0:0:0,0:41,43:0,0:0,1	81:2:0:0:0,0:68,72:0,0:11,12
7	62430580	.	A	G	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:0:0:0:36,36:0,0:0,0:0,0	75:2:0:0:65,65:0,0:8,9:0,0
7	62750206	rs9770532	T	A	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=TT->AT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=DOWNSTREAM(MODIFIER|||||ZNF733P|processed_transcript|NON_CODING|ENST00000331425||1),DOWNSTREAM(MODIFIER|||||ZNF733P|transcribed_unprocessed_pseudogene|NON_CODING|ENST00000444809||1),INTERGENIC(MODIFIER||||||||||1);RSPOS=62750206;dbSNPBuildID=119;SSR=0;SAO=0;VP=050000000005000103000100;WGT=1;VC=SNV;ASP;GNO;OTHERKG;PH3	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:1:0:0:0,2:0,0:0,0:35,35	86:2:0:0:14,22:0,0:0,0:70,71
7	63137654	.	G	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	26:0:0:0:0,0:0,0:26,29:0,0	39:0:0:0:5,5:0,0:34,40:0,0
7	63218032	.	C	G	.	PASS	NT=ref;QSS=24;QSS_NT=24;SGT=CC->CG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	46:2:0:0:0,0:44,56:0,1:0,0	101:7:0:0:0,0:79,103:15,17:0,2
7	63744285	.	G	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:0:0:0:0,0:0,0:32,34:0,0	88:0:0:0:0,0:0,0:84,84:4,4
7	64953891	.	C	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	57:8:0:0:1,1:48,130:0,0:0,0	125:18:0:0:6,9:98,259:0,0:3,6
7	64953914	.	T	A	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	41:5:56:0:0,1:0,0:0,0:36,83	78:4:103:0:6,11:0,0:0,0:68,163
7	64961358	.	C	A	.	PASS	NT=ref;QSS=27;QSS_NT=27;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	58:4:0:0:0,1:54,80:0,0:0,0	144:8:0:0:6,11:130,174:0,0:0,0
7	64966755	.	G	A	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	41:0:0:0:0,0:0,0:40,56:1,1	105:0:0:0:7,14:0,0:98,128:0,1
7	64974523	rs141611500	C	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||RP11-328P23.3|processed_pseudogene|NON_CODING|ENST00000445949||1);RSPOS=64974523;GMAF=0.0046;dbSNPBuildID=134;SSR=0;SAO=0;VP=050000000005000014000100;WGT=1;VC=SNV;ASP;KGPhase1;KGPROD	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:1:0:0:0,0:32,34:0,0:0,0	70:5:0:0:4,4:61,66:0,0:0,0
7	65240044	.	C	T	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-479O9.2|unprocessed_pseudogene|NON_CODING|ENST00000414608|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	44:2:0:0:0,0:42,44:0,0:0,0	83:0:0:0:0,0:78,78:0,0:5,5
7	65352028	.	A	G	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||176|VKORC1L1|protein_coding|CODING|ENST00000360768|1|1),INTRON(MODIFIER||||177|VKORC1L1|protein_coding|CODING|ENST00000434382|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	24:0:0:0:24,24:0,0:0,0:0,0	57:1:0:0:47,48:0,0:9,9:0,0
7	65664740	.	G	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:2:0:0:0,0:0,0:29,31:0,0	66:2:0:0:0,0:0,0:58,60:6,7
7	66824679	rs201303708	T	G	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||AC006480.1|miRNA|NON_CODING|ENST00000584839||1),INTERGENIC(MODIFIER||||||||||1);RSPOS=66824679;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:1:0:0:0,0:0,0:0,0:34,35	91:3:0:0:0,0:0,0:6,6:82,85
7	67354902	.	G	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:1:0:0:0,0:1,1:33,35:0,0	78:0:0:0:4,4:0,0:74,77:0,0
7	67669915	.	C	A	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP5-945F2.3|processed_transcript|NON_CODING|ENST00000446187|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:0:0:0:0,0:35,35:0,0:0,0	89:1:0:0:7,7:81,83:0,0:0,0
7	68093463	.	C	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:2:0:0:0,0:35,37:0,0:0,0	68:1:0:0:0,0:62,64:0,0:5,5
7	68926193	.	C	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:2:0:0:0,0:33,35:0,0:0,0	90:1:0:0:0,0:85,86:4,4:0,0
7	69154938	.	C	T	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1235|AUTS2|protein_coding|CODING|ENST00000406775|1|1),INTRON(MODIFIER||||1259|AUTS2|protein_coding|CODING|ENST00000342771|1|1),INTRON(MODIFIER||||266|AUTS2|protein_coding|CODING|ENST00000403018|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:1:0:0:0,0:37,38:0,0:0,0	85:1:0:0:0,0:78,79:0,0:6,6
7	69154939	.	A	G	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1235|AUTS2|protein_coding|CODING|ENST00000406775|1|1),INTRON(MODIFIER||||1259|AUTS2|protein_coding|CODING|ENST00000342771|1|1),INTRON(MODIFIER||||266|AUTS2|protein_coding|CODING|ENST00000403018|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:1:0:0:37,38:0,0:0,0:0,0	87:1:0:0:78,78:2,2:6,6:0,1
7	69589151	.	A	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1235|AUTS2|protein_coding|CODING|ENST00000406775|3|1),INTRON(MODIFIER||||1259|AUTS2|protein_coding|CODING|ENST00000342771|3|1),INTRON(MODIFIER||||266|AUTS2|protein_coding|CODING|ENST00000403018|3|1),INTRON(MODIFIER|||||AUTS2|processed_transcript|CODING|ENST00000476695|4|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	28:0:0:0:28,28:0,0:0,0:0,0	77:1:0:0:71,71:0,0:0,0:5,5
7	70953725	.	C	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||598|WBSCR17|protein_coding|CODING|ENST00000333538|5|1),INTRON(MODIFIER|||||WBSCR17|processed_transcript|CODING|ENST00000467723|5|1),INTRON(MODIFIER|||||WBSCR17|processed_transcript|CODING|ENST00000498380|5|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:1:0:0:0,1:30,30:0,0:0,0	101:2:0:0:0,0:94,94:0,1:5,6
7	70953729	.	T	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||598|WBSCR17|protein_coding|CODING|ENST00000333538|5|1),INTRON(MODIFIER|||||WBSCR17|processed_transcript|CODING|ENST00000467723|5|1),INTRON(MODIFIER|||||WBSCR17|processed_transcript|CODING|ENST00000498380|5|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:2:0:0:0,0:1,1:0,0:29,30	100:4:0:0:5,8:1,1:0,0:90,91
7	71694374	.	C	G	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||124|CALN1|protein_coding|CODING|ENST00000446128|2|1),INTRON(MODIFIER||||219|CALN1|protein_coding|CODING|ENST00000329008|2|1),INTRON(MODIFIER||||219|CALN1|protein_coding|CODING|ENST00000395276|3|1),INTRON(MODIFIER||||219|CALN1|protein_coding|CODING|ENST00000405452|1|1),INTRON(MODIFIER||||219|CALN1|protein_coding|CODING|ENST00000431984|2|1),INTRON(MODIFIER||||261|CALN1|protein_coding|CODING|ENST00000395275|3|1),INTRON(MODIFIER||||261|CALN1|protein_coding|CODING|ENST00000412588|2|1),INTRON(MODIFIER|||||CALN1|nonsense_mediated_decay|CODING|ENST00000433253|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:1:0:0:0,0:39,41:0,0:0,0	80:1:0:0:0,0:72,74:7,7:0,0
7	72016931	rs200495126	C	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=72016931;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:0:0:0:0,0:30,38:0,0:0,0	84:0:0:0:0,0:76,89:0,0:8,10
7	72016942	.	G	A	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:0:0:0:0,0:0,0:34,42:0,0	78:0:0:0:8,10:0,0:70,83:0,0
7	72023662	.	C	A	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||TYW1B|processed_transcript|NON_CODING|ENST00000438125||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:0:0:0:0,0:37,37:0,0:0,0	70:2:0:0:4,4:64,65:0,1:0,0
7	73250763	.	G	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||209|CLDN4|protein_coding|CODING|ENST00000340958||1),DOWNSTREAM(MODIFIER||||209|CLDN4|protein_coding|CODING|ENST00000431918||1),DOWNSTREAM(MODIFIER||||209|CLDN4|protein_coding|CODING|ENST00000435050||1),DOWNSTREAM(MODIFIER|||||WBSCR27|retained_intron|CODING|ENST00000493174||1),INTRON(MODIFIER||||245|WBSCR27|protein_coding|CODING|ENST00000297873|5|1),INTRON(MODIFIER|||||WBSCR27|nonsense_mediated_decay|CODING|ENST00000458679|4|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:4:0:0:0,0:0,0:29,41:0,0	67:5:0:0:0,0:6,7:56,84:0,0
7	73254472	.	T	G	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||245|WBSCR27|protein_coding|CODING|ENST00000297873|4|1),INTRON(MODIFIER|||||WBSCR27|nonsense_mediated_decay|CODING|ENST00000458679|3|1),INTRON(MODIFIER|||||WBSCR27|retained_intron|CODING|ENST00000493174|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:1:0:0:0,0:0,0:2,2:29,30	61:4:0:0:0,0:1,1:16,18:40,42
7	73665901	rs111512979	A	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=AA->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER||||320|RFC2|protein_coding|CODING|ENST00000352131|2|1),INTRON(MODIFIER||||354|RFC2|protein_coding|CODING|ENST00000055077|2|1),INTRON(MODIFIER|||||RFC2|nonsense_mediated_decay|CODING|ENST00000463194|2|1),INTRON(MODIFIER|||||RFC2|nonsense_mediated_decay|CODING|ENST00000480432|2|1),INTRON(MODIFIER|||||RFC2|nonsense_mediated_decay|CODING|ENST00000491206|1|1),INTRON(MODIFIER|||||RFC2|nonsense_mediated_decay|CODING|ENST00000493156|3|1);RSPOS=73665901;GMAF=0.3663;dbSNPBuildID=132;SSR=0;SAO=0;VP=050100080001040116000100;GENEINFO=RFC2:5982;WGT=1;VC=SNV;SLO;INT;VLD;GNO;KGPhase1;KGPROD;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:0:0:0:37,37:1,1:0,0:0,0	66:1:0:0:59,61:0,0:6,6:0,0
7	73932013	.	A	G	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=AA->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER||||944|GTF2IRD1|protein_coding|CODING|ENST00000424337|4|1),INTRON(MODIFIER||||959|GTF2IRD1|protein_coding|CODING|ENST00000265755|4|1),INTRON(MODIFIER||||960|GTF2IRD1|protein_coding|CODING|ENST00000476977|4|1),INTRON(MODIFIER||||976|GTF2IRD1|protein_coding|CODING|ENST00000455841|4|1),INTRON(MODIFIER|||||GTF2IRD1|processed_transcript|CODING|ENST00000489094|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	43:0:0:0:43,43:0,0:0,1:0,0	91:1:0:0:83,85:2,2:5,6:0,0
7	74002163	.	A	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||944|GTF2IRD1|protein_coding|CODING|ENST00000424337|22|1),INTRON(MODIFIER||||959|GTF2IRD1|protein_coding|CODING|ENST00000265755|22|1),INTRON(MODIFIER||||960|GTF2IRD1|protein_coding|CODING|ENST00000476977|22|1),INTRON(MODIFIER||||976|GTF2IRD1|protein_coding|CODING|ENST00000455841|22|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	28:1:0:0:27,28:0,0:0,0:0,0	105:1:0:0:98,100:0,0:6,6:0,0
7	74022178	.	T	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:3:0:0:0,0:0,0:0,0:28,31	88:2:0:0:0,0:6,7:1,1:79,80
7	74027872	.	A	G	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:0:0:0:35,35:0,0:0,0:0,0	76:1:0:0:68,71:0,0:7,7:0,0
7	74027875	.	A	G	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:0:0:0:35,35:0,0:0,0:0,0	76:1:0:0:68,71:0,0:6,6:1,1
7	74197730	rs186739998	G	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||145|NCF1|protein_coding|CODING|ENST00000442021||1),DOWNSTREAM(MODIFIER||||186|NCF1|protein_coding|CODING|ENST00000433458||1),DOWNSTREAM(MODIFIER|||||NCF1|processed_transcript|CODING|ENST00000438106||1),EXON(MODIFIER|||||NCF1|retained_intron|CODING|ENST00000398421|6|1),EXON(MODIFIER|||||NCF1|retained_intron|CODING|ENST00000449343|6|1),EXON(MODIFIER|||||NCF1|retained_intron|CODING|ENST00000455062|4|1),EXON(MODIFIER|||||NCF1|retained_intron|CODING|ENST00000464878|3|1),EXON(MODIFIER|||||NCF1|retained_intron|CODING|ENST00000488197|2|1),INTRON(MODIFIER||||390|NCF1|protein_coding|CODING|ENST00000289473|6|1),INTRON(MODIFIER|||||AC004166.7|unprocessed_pseudogene|NON_CODING|ENST00000380775|8|1),INTRON(MODIFIER|||||NCF1|processed_transcript|CODING|ENST00000443956|7|1),UPSTREAM(MODIFIER|||||NCF1|processed_transcript|CODING|ENST00000486097||1);RSPOS=74197730;GMAF=0.4977;dbSNPBuildID=135;SSR=0;SAO=0;VP=050000080005000016000100;GENEINFO=NCF1:653361;WGT=1;VC=SNV;INT;ASP;KGPhase1;KGPROD;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	18:0:0:0:0,0:0,0:18,19:0,0	40:0:0:0:7,10:0,0:32,32:1,1
7	75306443	.	A	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1037|HIP1|protein_coding|CODING|ENST00000336926|1|1),INTRON(MODIFIER||||986|HIP1|protein_coding|CODING|ENST00000434438|1|1),INTRON(MODIFIER|||||HIP1|processed_transcript|CODING|ENST00000485723|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:2:0:0:29,31:0,0:0,0:0,0	81:2:0:0:74,75:0,0:5,6:0,0
7	75344981	.	T	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1037|HIP1|protein_coding|CODING|ENST00000336926|1|1),INTRON(MODIFIER||||986|HIP1|protein_coding|CODING|ENST00000434438|1|1),INTRON(MODIFIER|||||HIP1|processed_transcript|CODING|ENST00000485723|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	26:0:0:0:0,0:0,0:0,0:26,26	59:0:0:0:0,0:0,0:8,8:51,53
7	75989822	.	G	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER||||247|YWHAG|protein_coding|CODING|ENST00000307630||1),UPSTREAM(MODIFIER|||||AC005522.6|processed_pseudogene|NON_CODING|ENST00000395416||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:0:0:0:0,0:0,0:30,30:0,0	101:2:0:0:5,5:0,0:94,96:0,0
7	76024079	.	T	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||575|SRCRB4D|protein_coding|CODING|ENST00000275560|7|1),UPSTREAM(MODIFIER||||373|ZP3|protein_coding|CODING|ENST00000336517||1),UPSTREAM(MODIFIER|||||SRCRB4D|processed_transcript|CODING|ENST00000492979||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:5:0:0:0,0:0,0:0,0:28,34	65:7:0:0:5,5:0,0:0,0:53,63
7	76855568	.	T	G	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||169|CCDC146|protein_coding|CODING|ENST00000415750|2|1),INTRON(MODIFIER||||669|CCDC146|protein_coding|CODING|ENST00000431197|2|1),INTRON(MODIFIER||||955|CCDC146|protein_coding|CODING|ENST00000285871|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	43:0:0:0:0,0:0,0:0,0:43,43	82:0:0:0:0,0:0,0:4,4:78,78
7	79371678	.	T	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:1:0:0:0,0:0,0:0,0:29,30	79:1:0:0:4,4:0,0:0,0:74,75
7	79383637	.	C	G	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:0:0:0:0,0:31,31:0,0:0,0	80:0:0:0:0,0:75,75:5,5:0,0
7	80623721	rs79580603	G	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=80623721;dbSNPBuildID=131;SSR=0;SAO=0;VP=050000000001000102000100;WGT=1;VC=SNV;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:3:0:0:0,0:0,0:28,31:0,0	75:1:0:0:0,0:0,0:64,66:10,11
7	81089969	.	T	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||AC008163.6|processed_pseudogene|NON_CODING|ENST00000424916||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:0:0:0:0,0:0,0:0,0:33,33	79:0:0:0:0,0:6,6:0,0:73,73
7	82148715	.	A	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:5:0:0:30,35:0,0:0,0:0,0	83:19:0:0:58,77:6,6:0,0:0,0
7	82771229	.	G	C	.	PASS	NT=ref;QSS=24;QSS_NT=24;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||4935|PCLO|protein_coding|CODING|ENST00000423517|2|1),INTRON(MODIFIER||||5142|PCLO|protein_coding|CODING|ENST00000333891|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	48:1:0:0:0,0:0,0:47,48:0,0	88:1:0:0:1,1:7,7:79,80:0,0
7	82933869	.	C	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	27:0:0:0:0,0:27,27:0,0:0,0	82:0:0:0:0,0:76,76:0,0:6,6
7	84202632	.	C	T	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=EXON(MODIFIER|||||AC003984.1|lincRNA|NON_CODING|ENST00000450977|3|1),INTRON(MODIFIER|||||AC003984.1|lincRNA|NON_CODING|ENST00000446000|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:0:0:0:0,0:37,37:0,0:0,0	77:0:0:0:1,1:68,68:0,0:8,8
7	84218508	.	T	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||AC003984.1|lincRNA|NON_CODING|ENST00000446000||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:0:0:0:0,0:0,0:0,0:29,29	60:3:0:0:0,0:0,0:6,7:51,56
7	84959180	.	A	C	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	28:2:0:0:24,26:1,1:0,0:1,1	44:0:0:0:33,35:10,12:0,0:1,1
7	86139505	.	T	A	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:0:0:0:0,0:0,0:0,0:34,34	81:1:0:0:8,8:0,0:0,0:72,73
7	86776170	.	A	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||AC005076.5|processed_transcript|NON_CODING|ENST00000433446||1),DOWNSTREAM(MODIFIER|||||AC005076.5|processed_transcript|NON_CODING|ENST00000446309||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:0:0:0:33,33:0,0:0,0:0,0	67:0:0:0:62,62:0,0:0,0:5,5
7	87163799	.	G	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1216|ABCB1|protein_coding|CODING|ENST00000543898|18|1),INTRON(MODIFIER||||1280|ABCB1|protein_coding|CODING|ENST00000265724|21|1),INTRON(MODIFIER|||||ABCB1|nonsense_mediated_decay|CODING|ENST00000415096|17|1),INTRON(MODIFIER|||||ABCB1|processed_transcript|CODING|ENST00000496821|2|1),UPSTREAM(MODIFIER|||||ABCB1|processed_transcript|CODING|ENST00000488737||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	28:1:0:0:0,0:0,0:27,28:0,0	78:2:0:0:0,0:0,0:71,73:5,5
7	87668103	.	T	C	.	PASS	NT=ref;QSS=28;QSS_NT=28;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||195|ADAM22|protein_coding|CODING|ENST00000412441|4|1),INTRON(MODIFIER||||342|ADAM22|protein_coding|CODING|ENST00000439864|3|1),INTRON(MODIFIER||||803|ADAM22|protein_coding|CODING|ENST00000398203|2|1),INTRON(MODIFIER||||859|ADAM22|protein_coding|CODING|ENST00000398201|3|1),INTRON(MODIFIER||||870|ADAM22|protein_coding|CODING|ENST00000398204|3|1),INTRON(MODIFIER||||899|ADAM22|protein_coding|CODING|ENST00000315984|3|1),INTRON(MODIFIER||||899|ADAM22|protein_coding|CODING|ENST00000398209|3|1),INTRON(MODIFIER||||906|ADAM22|protein_coding|CODING|ENST00000265727|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:2:0:0:0,0:0,0:0,0:34,37	65:2:0:0:0,0:12,12:0,0:51,54
7	88013634	.	A	C	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:0:0:0:33,33:0,0:0,0:0,0	72:2:0:0:62,64:8,8:0,0:0,0
7	88059538	.	G	A	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:0:0:0:0,0:0,0:40,40:0,0	74:2:0:0:9,9:0,0:63,64:0,1
7	88365136	.	C	G	.	PASS	NT=ref;QSS=23;QSS_NT=23;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||AC002127.4|processed_transcript|NON_CODING|ENST00000444032|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	51:1:0:0:1,1:49,50:0,0:0,0	77:1:0:0:0,0:72,73:4,4:0,0
7	89671257	.	G	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||STEAP2-AS1|antisense|NON_CODING|ENST00000478318|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:0:0:0:0,0:0,0:29,29:0,0	73:1:0:0:0,0:0,0:67,68:5,5
7	89836253	.	G	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||STEAP2-AS1|retained_intron|NON_CODING|ENST00000433534||1),INTRON(MODIFIER||||180|STEAP2|protein_coding|CODING|ENST00000428074|1|1),INTRON(MODIFIER|||||STEAP2-AS1|antisense|NON_CODING|ENST00000478318|2|1),UPSTREAM(MODIFIER||||403|STEAP2|protein_coding|CODING|ENST00000402625||1),UPSTREAM(MODIFIER||||419|STEAP2|protein_coding|CODING|ENST00000394632||1),UPSTREAM(MODIFIER||||454|STEAP2|protein_coding|CODING|ENST00000394624||1),UPSTREAM(MODIFIER||||454|STEAP2|protein_coding|CODING|ENST00000394626||1),UPSTREAM(MODIFIER||||490|STEAP2|protein_coding|CODING|ENST00000287908||1),UPSTREAM(MODIFIER||||490|STEAP2|protein_coding|CODING|ENST00000394621||1),UPSTREAM(MODIFIER||||490|STEAP2|protein_coding|CODING|ENST00000394622||1),UPSTREAM(MODIFIER||||87|STEAP2|protein_coding|CODING|ENST00000426158||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:3:0:0:0,0:0,0:29,32:1,1	91:0:0:0:5,5:0,0:86,86:0,0
7	91375519	.	A	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||CTB-104F4.2|processed_transcript|NON_CODING|ENST00000454222|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:1:0:0:32,33:0,0:0,0:0,0	75:2:0:0:67,70:6,6:0,0:0,0
7	91517812	.	T	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:6:0:0:0,0:0,2:0,2:31,37	55:5:0:0:5,5:0,0:1,2:44,52
7	91655294	.	G	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||3857|AKAP9|protein_coding|CODING|ENST00000358100|15|1),INTRON(MODIFIER||||3907|AKAP9|protein_coding|CODING|ENST00000356239|14|1),INTRON(MODIFIER||||3911|AKAP9|protein_coding|CODING|ENST00000359028|15|1),INTRON(MODIFIER|||||AKAP9|retained_intron|CODING|ENST00000493453|15|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:0:0:0:0,0:0,0:31,31:0,0	94:0:0:0:0,0:0,0:85,85:9,9
7	92127207	.	T	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=DOWNSTREAM(MODIFIER|||||PEX1|retained_intron|CODING|ENST00000496092||1),INTRON(MODIFIER||||1226|PEX1|protein_coding|CODING|ENST00000428214|15|1),INTRON(MODIFIER||||1283|PEX1|protein_coding|CODING|ENST00000248633|16|1),INTRON(MODIFIER||||160|PEX1|protein_coding|CODING|ENST00000541751|10|1),INTRON(MODIFIER||||961|PEX1|protein_coding|CODING|ENST00000438045|13|1),INTRON(MODIFIER|||||PEX1|retained_intron|CODING|ENST00000484913|16|1),INTRON(MODIFIER|||||PEX1|retained_intron|CODING|ENST00000496420|5|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	25:0:0:0:0,0:0,0:0,0:25,25	58:2:0:0:1,1:8,8:0,1:47,49
7	92384536	.	C	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||326|CDK6|protein_coding|CODING|ENST00000265734|3|1),INTRON(MODIFIER||||326|CDK6|protein_coding|CODING|ENST00000424848|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	28:0:0:0:0,0:28,29:0,0:0,0	75:1:0:0:5,5:69,70:0,0:0,0
7	94175651	rs76753350	C	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||797|CASD1|protein_coding|CODING|ENST00000297273|12|1);RSPOS=94175651;GMAF=0.0101;dbSNPBuildID=132;SSR=0;SAO=0;VP=050000080001070014000100;GENEINFO=CASD1:64921;WGT=1;VC=SNV;INT;VLD;G5A;G5;KGPhase1;KGPROD	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:0:0:0:0,0:32,32:0,0:0,0	77:0:0:0:0,0:73,73:0,0:4,4
7	95435599	.	C	A	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||116|DYNC1I1|protein_coding|CODING|ENST00000413338|2|1),INTRON(MODIFIER||||127|DYNC1I1|protein_coding|CODING|ENST00000518089|2|1),INTRON(MODIFIER||||602|DYNC1I1|protein_coding|CODING|ENST00000537881|2|1),INTRON(MODIFIER||||608|DYNC1I1|protein_coding|CODING|ENST00000359388|2|1),INTRON(MODIFIER||||625|DYNC1I1|protein_coding|CODING|ENST00000437599|2|1),INTRON(MODIFIER||||628|DYNC1I1|protein_coding|CODING|ENST00000447467|2|1),INTRON(MODIFIER||||628|DYNC1I1|protein_coding|CODING|ENST00000457059|2|1),INTRON(MODIFIER||||645|DYNC1I1|protein_coding|CODING|ENST00000324972|2|1),INTRON(MODIFIER||||84|DYNC1I1|protein_coding|CODING|ENST00000524053|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:0:0:0:0,0:36,36:0,0:0,0	98:1:0:0:5,6:92,92:0,0:0,0
7	95791618	.	T	C	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||567|SLC25A13|protein_coding|CODING|ENST00000542654|12|1),INTRON(MODIFIER||||675|SLC25A13|protein_coding|CODING|ENST00000265631|13|1),INTRON(MODIFIER||||676|SLC25A13|protein_coding|CODING|ENST00000416240|13|1),INTRON(MODIFIER|||||SLC25A13|processed_transcript|CODING|ENST00000490072|5|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:1:0:0:0,0:0,0:0,0:39,40	90:1:0:0:0,0:7,7:0,0:82,84
7	96964227	.	C	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	28:0:0:0:0,0:28,28:0,0:0,0	64:0:0:0:0,0:58,59:6,6:0,0
7	97196820	.	T	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	28:1:0:0:0,0:0,1:0,0:27,27	66:0:0:0:4,4:0,0:0,0:62,62
7	97558580	.	T	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->GT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:0:0:0:0,0:0,0:0,1:36,37	79:0:0:0:0,0:0,0:6,7:73,73
7	97950474	.	G	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||511|BAIAP2L1|protein_coding|CODING|ENST00000005260|3|1),INTRON(MODIFIER|||||BAIAP2L1|processed_transcript|CODING|ENST00000462558|3|1),INTRON(MODIFIER|||||BAIAP2L1|retained_intron|CODING|ENST00000473569|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	27:0:0:0:0,0:0,0:27,27:0,0	86:0:0:0:6,6:2,2:78,78:0,0
7	98897990	.	A	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||MYH16|unitary_pseudogene|NON_CODING|ENST00000330888||1),INTRON(MODIFIER|||||MYH16|processed_transcript|NON_CODING|ENST00000452010|2|1),INTRON(MODIFIER|||||MYH16|retained_intron|NON_CODING|ENST00000429079|1|1),INTRON(MODIFIER|||||MYH16|unitary_pseudogene|NON_CODING|ENST00000439784|37|1),UPSTREAM(MODIFIER|||||MYH16|processed_transcript|NON_CODING|ENST00000453378||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:0:0:0:32,32:0,0:0,0:0,0	75:1:0:0:69,70:5,5:0,0:0,0
7	98930554	.	C	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||345|ARPC1A|protein_coding|CODING|ENST00000432884|1|1),INTRON(MODIFIER||||370|ARPC1A|protein_coding|CODING|ENST00000262942|1|1),INTRON(MODIFIER|||||ARPC1A|nonsense_mediated_decay|CODING|ENST00000432786|1|1),INTRON(MODIFIER|||||ARPC1A|nonsense_mediated_decay|CODING|ENST00000441989|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:2:0:0:0,0:27,29:0,0:0,0	92:2:0:0:0,0:83,87:7,7:0,0
7	99186501	.	G	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||AC005020.1|miRNA|NON_CODING|ENST00000584735||1),INTRON(MODIFIER|||||ZNF655|nonsense_mediated_decay|CODING|ENST00000455905|2|1),INTRON(MODIFIER|||||ZNF655|processed_transcript|CODING|ENST00000486324|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:2:0:0:0,0:0,0:33,35:0,0	81:1:0:0:0,0:0,0:73,74:7,7
7	99931594	.	C	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||PMS2P1|unprocessed_pseudogene|NON_CODING|ENST00000431037|2|1),UPSTREAM(MODIFIER||||149|PILRB|protein_coding|CODING|ENST00000444874||1),UPSTREAM(MODIFIER||||227|PILRB|protein_coding|CODING|ENST00000310771||1),UPSTREAM(MODIFIER|||||CTB-161A2.3|processed_transcript|NON_CODING|ENST00000414292||1),UPSTREAM(MODIFIER|||||CTB-161A2.3|processed_transcript|NON_CODING|ENST00000422479||1),UPSTREAM(MODIFIER|||||CTB-161A2.3|processed_transcript|NON_CODING|ENST00000434211||1),UPSTREAM(MODIFIER|||||CTB-161A2.3|transcribed_unprocessed_pseudogene|NON_CODING|ENST00000443759||1),UPSTREAM(MODIFIER|||||PILRB|processed_transcript|CODING|ENST00000470714||1),UPSTREAM(MODIFIER|||||PILRB|processed_transcript|CODING|ENST00000483329||1),UPSTREAM(MODIFIER|||||PILRB|processed_transcript|CODING|ENST00000488972||1),UPSTREAM(MODIFIER|||||PILRB|processed_transcript|CODING|ENST00000493499||1),UPSTREAM(MODIFIER|||||PILRB|retained_intron|CODING|ENST00000473757||1),UPSTREAM(MODIFIER|||||PMS2P1|unprocessed_pseudogene|NON_CODING|ENST00000447708||1),UPSTREAM(MODIFIER|||||Y_RNA|misc_RNA|NON_CODING|ENST00000365043||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:0:0:0:0,0:31,31:0,0:0,0	80:1:0:0:0,0:74,76:0,0:5,5
7	99931627	rs149841268	C	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||PMS2P1|unprocessed_pseudogene|NON_CODING|ENST00000431037|2|1),UPSTREAM(MODIFIER||||149|PILRB|protein_coding|CODING|ENST00000444874||1),UPSTREAM(MODIFIER||||227|PILRB|protein_coding|CODING|ENST00000310771||1),UPSTREAM(MODIFIER|||||CTB-161A2.3|processed_transcript|NON_CODING|ENST00000414292||1),UPSTREAM(MODIFIER|||||CTB-161A2.3|processed_transcript|NON_CODING|ENST00000422479||1),UPSTREAM(MODIFIER|||||CTB-161A2.3|processed_transcript|NON_CODING|ENST00000434211||1),UPSTREAM(MODIFIER|||||CTB-161A2.3|transcribed_unprocessed_pseudogene|NON_CODING|ENST00000443759||1),UPSTREAM(MODIFIER|||||PILRB|processed_transcript|CODING|ENST00000470714||1),UPSTREAM(MODIFIER|||||PILRB|processed_transcript|CODING|ENST00000483329||1),UPSTREAM(MODIFIER|||||PILRB|processed_transcript|CODING|ENST00000488972||1),UPSTREAM(MODIFIER|||||PILRB|processed_transcript|CODING|ENST00000493499||1),UPSTREAM(MODIFIER|||||PILRB|retained_intron|CODING|ENST00000473757||1),UPSTREAM(MODIFIER|||||PMS2P1|unprocessed_pseudogene|NON_CODING|ENST00000447708||1),UPSTREAM(MODIFIER|||||Y_RNA|misc_RNA|NON_CODING|ENST00000365043||1);RSPOS=99931627;GMAF=0.0174;dbSNPBuildID=134;SSR=0;SAO=0;VP=050000080005000014000100;GENEINFO=PMS2P1:5379;WGT=1;VC=SNV;INT;ASP;KGPhase1;KGPROD	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:1:0:0:1,1:29,30:0,0:0,0	82:1:0:0:0,0:76,77:5,5:0,0
7	100362103	.	G	A	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1184|ZAN|protein_coding|CODING|ENST00000546213|21|1),INTRON(MODIFIER||||2623|ZAN|protein_coding|CODING|ENST00000538115|21|1),INTRON(MODIFIER||||2688|ZAN|protein_coding|CODING|ENST00000542585|21|1),INTRON(MODIFIER||||2720|ZAN|protein_coding|CODING|ENST00000546292|21|1),INTRON(MODIFIER|||||ZAN|polymorphic_pseudogene|CODING|ENST00000348028|22|1),INTRON(MODIFIER|||||ZAN|polymorphic_pseudogene|CODING|ENST00000349350|22|1),INTRON(MODIFIER|||||ZAN|polymorphic_pseudogene|CODING|ENST00000421100|22|1),INTRON(MODIFIER|||||ZAN|polymorphic_pseudogene|CODING|ENST00000427578|22|1),INTRON(MODIFIER|||||ZAN|polymorphic_pseudogene|CODING|ENST00000443370|22|1),INTRON(MODIFIER|||||ZAN|polymorphic_pseudogene|CODING|ENST00000449052|22|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:1:0:0:0,0:0,0:39,41:0,0	81:3:0:0:5,6:0,0:72,77:1,1
7	100396816	.	A	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||1184|ZAN|protein_coding|CODING|ENST00000546213||1),DOWNSTREAM(MODIFIER||||2623|ZAN|protein_coding|CODING|ENST00000538115||1),DOWNSTREAM(MODIFIER||||2688|ZAN|protein_coding|CODING|ENST00000542585||1),DOWNSTREAM(MODIFIER||||2720|ZAN|protein_coding|CODING|ENST00000546292||1),DOWNSTREAM(MODIFIER||||935|EPHB4|protein_coding|CODING|ENST00000360620||1),DOWNSTREAM(MODIFIER||||987|EPHB4|protein_coding|CODING|ENST00000358173||1),DOWNSTREAM(MODIFIER|||||EPHB4|retained_intron|CODING|ENST00000487222||1),DOWNSTREAM(MODIFIER|||||ZAN|polymorphic_pseudogene|CODING|ENST00000348028||1),DOWNSTREAM(MODIFIER|||||ZAN|polymorphic_pseudogene|CODING|ENST00000349350||1),DOWNSTREAM(MODIFIER|||||ZAN|polymorphic_pseudogene|CODING|ENST00000421100||1),DOWNSTREAM(MODIFIER|||||ZAN|polymorphic_pseudogene|CODING|ENST00000427578||1),DOWNSTREAM(MODIFIER|||||ZAN|polymorphic_pseudogene|CODING|ENST00000443370||1),DOWNSTREAM(MODIFIER|||||ZAN|polymorphic_pseudogene|CODING|ENST00000449052||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:0:0:0:29,29:1,1:0,0:0,0	59:6:0:0:43,45:9,13:0,0:1,1
7	100548728	.	C	T	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||334|AC118759.1|protein_coding|CODING|ENST00000379458|1|1),INTRON(MODIFIER|||||MUC3A|processed_transcript|CODING|ENST00000483366|1|1),UPSTREAM(MODIFIER||||308|MUC3A|protein_coding|CODING|ENST00000422757||1),UPSTREAM(MODIFIER||||876|MUC3A|protein_coding|CODING|ENST00000319509||1),UPSTREAM(MODIFIER|||||MUC3A|nonsense_mediated_decay|CODING|ENST00000414964||1),UPSTREAM(MODIFIER|||||MUC3A|retained_intron|CODING|ENST00000483133||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:0:0:0:0,0:39,40:0,0:0,0	83:2:0:0:0,0:77,79:0,0:4,4
7	100617735	.	T	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||5335|MUC12|protein_coding|CODING|ENST00000536621|1|1),INTRON(MODIFIER||||5478|MUC12|protein_coding|CODING|ENST00000379442|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:0:0:0:0,0:0,0:0,0:30,30	74:1:0:0:0,0:4,4:0,0:69,70
7	100681363	rs149582193	C	A	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=EXON(MODIFIER|||||MUC17|nonsense_mediated_decay|CODING|ENST00000379439|3|1),NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|ttC/ttA|F2222L|4493|MUC17|protein_coding|CODING|ENST00000306151|3|1);RSPOS=100681363;dbSNPBuildID=134;SSR=0;SAO=0;VP=050000000a05000002000100;GENEINFO=MUC17:140453;WGT=1;VC=SNV;NSM;REF;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:2:0:0:0,0:37,39:1,1:0,0	69:3:0:0:6,10:60,61:0,0:0,0
7	100736057	.	G	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||304|TRIM56|protein_coding|CODING|ENST00000412507||1),DOWNSTREAM(MODIFIER||||755|TRIM56|protein_coding|CODING|ENST00000306085||1),DOWNSTREAM(MODIFIER|||||TRIM56|processed_transcript|CODING|ENST00000487252||1),INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||RP11-395B7.7|sense_overlapping|NON_CODING|ENST00000564977||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	47:3:0:0:0,0:1,1:43,50:0,0	85:5:0:0:2,3:6,11:72,79:0,0
7	100924712	.	A	G	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:0:0:0:35,36:0,0:0,0:0,0	98:2:0:0:91,93:0,0:5,6:0,0
7	100924718	.	C	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:0:0:0:0,0:33,34:0,0:0,0	96:1:0:0:0,0:90,91:5,5:0,0
7	101168586	.	T	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||440|EMID2|protein_coding|CODING|ENST00000313669|3|1),INTRON(MODIFIER|||||EMID2|polymorphic_pseudogene|CODING|ENST00000397927|3|1),INTRON(MODIFIER|||||EMID2|polymorphic_pseudogene|CODING|ENST00000528707|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	27:0:0:0:0,0:0,0:0,0:27,27	60:0:0:0:0,0:6,6:1,1:53,54
7	101394705	.	A	G	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:0:0:0:33,33:0,0:0,0:1,1	72:1:0:0:66,68:0,1:5,5:0,0
7	102963710	.	T	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||DNAJC2|nonsense_mediated_decay|CODING|ENST00000379257||1),INTRON(MODIFIER||||187|DNAJC2|protein_coding|CODING|ENST00000454277|7|1),INTRON(MODIFIER||||403|PMPCB|protein_coding|CODING|ENST00000420236|12|1),INTRON(MODIFIER||||568|DNAJC2|protein_coding|CODING|ENST00000249270|7|1),INTRON(MODIFIER||||621|DNAJC2|protein_coding|CODING|ENST00000379263|7|1),INTRON(MODIFIER|||||DNAJC2|retained_intron|CODING|ENST00000464253|7|1),INTRON(MODIFIER|||||DNAJC2|retained_intron|CODING|ENST00000475065|7|1),INTRON(MODIFIER|||||DNAJC2|retained_intron|CODING|ENST00000483637|2|1),INTRON(MODIFIER|||||PMPCB|nonsense_mediated_decay|CODING|ENST00000444457|12|1),UPSTREAM(MODIFIER|||||DNAJC2|retained_intron|CODING|ENST00000475090||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:1:0:0:0,0:0,0:0,0:31,33	86:0:0:0:0,0:7,7:0,0:79,80
7	103307347	.	A	C	.	PASS	NT=ref;QSS=25;QSS_NT=25;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||3458|RELN|protein_coding|CODING|ENST00000343529|11|1),INTRON(MODIFIER||||3460|RELN|protein_coding|CODING|ENST00000424685|11|1),INTRON(MODIFIER||||3460|RELN|protein_coding|CODING|ENST00000428762|11|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:1:0:0:34,35:0,0:0,0:0,0	71:1:0:0:58,59:12,12:0,0:0,0
7	104035512	.	T	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||218|LHFPL3|protein_coding|CODING|ENST00000401970|1|1),INTRON(MODIFIER||||222|LHFPL3|protein_coding|CODING|ENST00000424859|1|1),INTRON(MODIFIER||||232|LHFPL3|protein_coding|CODING|ENST00000543266|1|1),INTRON(MODIFIER||||236|LHFPL3|protein_coding|CODING|ENST00000535008|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:1:0:0:0,0:0,0:0,0:29,30	75:1:0:0:7,7:0,0:0,0:67,68
7	104312510	.	G	A	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||EIF4BP6|processed_pseudogene|NON_CODING|ENST00000431936||1),INTRON(MODIFIER||||218|LHFPL3|protein_coding|CODING|ENST00000401970|1|1),INTRON(MODIFIER||||222|LHFPL3|protein_coding|CODING|ENST00000424859|1|1),INTRON(MODIFIER||||232|LHFPL3|protein_coding|CODING|ENST00000543266|3|1),INTRON(MODIFIER||||236|LHFPL3|protein_coding|CODING|ENST00000535008|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:1:0:0:0,0:0,0:33,34:0,0	80:1:0:0:7,7:0,0:72,74:0,0
7	106210278	.	C	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||CTB-30L5.1|lincRNA|NON_CODING|ENST00000591803||1),INTRON(MODIFIER|||||CTB-111H14.1|processed_transcript|NON_CODING|ENST00000485282|3|1),INTRON(MODIFIER|||||CTB-111H14.1|processed_transcript|NON_CODING|ENST00000490856|2|1),INTRON(MODIFIER|||||CTB-111H14.1|processed_transcript|NON_CODING|ENST00000592441|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	27:0:0:0:0,0:27,28:0,0:0,0	88:1:0:0:0,0:79,79:0,0:8,8
7	107318588	.	C	T	.	PASS	NT=ref;QSS=28;QSS_NT=28;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||780|SLC26A4|protein_coding|CODING|ENST00000265715|6|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:0:0:0:0,0:31,31:0,0:0,0	60:1:0:0:0,0:47,48:0,0:12,12
7	107638550	.	C	A	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||182|LAMB1|protein_coding|CODING|ENST00000439976||1),DOWNSTREAM(MODIFIER||||90|LAMB1|protein_coding|CODING|ENST00000393559||1),DOWNSTREAM(MODIFIER|||||U3|snoRNA|NON_CODING|ENST00000458938||1),INTRON(MODIFIER||||1786|LAMB1|protein_coding|CODING|ENST00000222399|4|1),INTRON(MODIFIER||||1810|LAMB1|protein_coding|CODING|ENST00000393561|2|1),INTRON(MODIFIER||||850|LAMB1|protein_coding|CODING|ENST00000393560|4|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	43:1:0:0:0,0:42,43:0,0:0,0	91:0:0:0:6,6:85,85:0,0:0,0
7	107959881	.	A	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||105|NRCAM|protein_coding|CODING|ENST00000456431|1|1),INTRON(MODIFIER||||117|NRCAM|protein_coding|CODING|ENST00000442580|1|1),INTRON(MODIFIER||||1180|NRCAM|protein_coding|CODING|ENST00000413765|2|1),INTRON(MODIFIER||||1183|NRCAM|protein_coding|CODING|ENST00000351718|2|1),INTRON(MODIFIER||||1192|NRCAM|protein_coding|CODING|ENST00000379024|2|1),INTRON(MODIFIER||||1236|NRCAM|protein_coding|CODING|ENST00000379022|2|1),INTRON(MODIFIER||||1304|NRCAM|protein_coding|CODING|ENST00000379028|2|1),INTRON(MODIFIER||||60|NRCAM|protein_coding|CODING|ENST00000418239|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:0:0:0:30,30:0,0:0,0:0,0	100:2:0:0:89,90:0,1:0,0:9,9
7	108506665	.	A	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:2:0:0:32,34:0,0:0,0:0,0	91:2:0:0:84,86:5,5:0,0:0,0
7	109083873	.	A	G	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:2:0:0:31,33:0,0:0,0:0,0	88:1:0:0:78,80:0,0:9,9:0,0
7	109083883	.	T	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:1:0:0:0,0:0,0:1,1:29,30	91:2:0:0:8,9:0,0:0,0:81,83
7	109531255	.	C	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:1:0:0:0,0:33,34:0,0:0,0	86:0:0:0:0,0:75,75:1,1:10,10
7	109678371	.	T	C	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	43:1:0:0:0,0:0,0:0,0:42,43	73:1:0:0:0,0:7,7:0,0:65,66
7	110013045	.	G	T	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:0:0:0:0,0:0,0:37,37:0,0	77:0:0:0:0,0:0,0:68,68:9,9
7	110368733	.	G	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||157|IMMP2L|protein_coding|CODING|ENST00000450877|4|1),INTRON(MODIFIER||||175|IMMP2L|protein_coding|CODING|ENST00000331762|6|1),INTRON(MODIFIER||||175|IMMP2L|protein_coding|CODING|ENST00000405709|5|1),INTRON(MODIFIER||||175|IMMP2L|protein_coding|CODING|ENST00000415362|4|1),INTRON(MODIFIER||||175|IMMP2L|protein_coding|CODING|ENST00000452895|6|1),INTRON(MODIFIER|||||IMMP2L|processed_transcript|CODING|ENST00000487733|1|1),INTRON(MODIFIER|||||IMMP2L|processed_transcript|CODING|ENST00000489381|2|1),UPSTREAM(MODIFIER|||||IMMP2L-IT1|sense_intronic|NON_CODING|ENST00000451832||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	27:0:0:0:0,0:0,0:27,27:0,0	69:0:0:0:0,0:6,6:63,63:0,0
7	110721112	.	T	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||110|IMMP2L|protein_coding|CODING|ENST00000437687|2|1),INTRON(MODIFIER||||110|IMMP2L|protein_coding|CODING|ENST00000447215|3|1),INTRON(MODIFIER||||157|IMMP2L|protein_coding|CODING|ENST00000450877|2|1),INTRON(MODIFIER||||175|IMMP2L|protein_coding|CODING|ENST00000331762|4|1),INTRON(MODIFIER||||175|IMMP2L|protein_coding|CODING|ENST00000405709|3|1),INTRON(MODIFIER||||175|IMMP2L|protein_coding|CODING|ENST00000415362|2|1),INTRON(MODIFIER||||175|IMMP2L|protein_coding|CODING|ENST00000452895|4|1),INTRON(MODIFIER|||||IMMP2L|processed_transcript|CODING|ENST00000489381|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:1:0:0:0,0:0,0:0,0:37,38	81:2:0:0:0,0:0,0:4,5:75,76
7	112693968	.	T	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:0:0:0:0,0:0,0:0,0:29,29	78:0:0:0:0,0:5,5:0,0:73,73
7	112882870	.	C	A	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:1:0:0:0,0:37,38:0,0:0,0	76:0:0:0:8,8:68,68:0,0:0,0
7	113275557	.	G	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:0:0:0:0,0:0,0:33,33:0,0	77:0:0:0:0,0:0,0:73,73:4,4
7	113913555	.	C	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||220|FOXP2|protein_coding|CODING|ENST00000324462|2|1),INTRON(MODIFIER||||382|FOXP2|protein_coding|CODING|ENST00000393500|2|1),INTRON(MODIFIER|||||FOXP2|nonsense_mediated_decay|CODING|ENST00000412402|1|1),INTRON(MODIFIER|||||FOXP2|nonsense_mediated_decay|CODING|ENST00000440349|2|1),INTRON(MODIFIER|||||FOXP2|nonsense_mediated_decay|CODING|ENST00000441290|2|1),INTRON(MODIFIER|||||FOXP2|processed_transcript|CODING|ENST00000495516|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:0:0:0:0,0:32,32:0,0:0,0	76:2:0:0:8,10:65,66:1,1:0,0
7	114637408	.	G	A	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||134|MDFIC|protein_coding|CODING|ENST00000498196|3|1),INTRON(MODIFIER||||246|MDFIC|protein_coding|CODING|ENST00000393486|4|1),INTRON(MODIFIER||||355|MDFIC|protein_coding|CODING|ENST00000257724|4|1),INTRON(MODIFIER|||||MDFIC|nonsense_mediated_decay|CODING|ENST00000431629|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:2:0:0:0,0:0,0:38,40:0,0	69:1:0:0:5,5:0,0:63,64:0,0
7	115106318	.	T	C	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:0:0:0:0,0:0,0:0,0:38,38	78:2:0:0:0,0:7,8:0,0:69,71
7	117143566	.	C	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1419|CFTR|protein_coding|CODING|ENST00000454343|1|1),INTRON(MODIFIER||||1437|CFTR|protein_coding|CODING|ENST00000426809|1|1),INTRON(MODIFIER||||1480|CFTR|protein_coding|CODING|ENST00000003084|1|1),INTRON(MODIFIER||||35|CFTR|protein_coding|CODING|ENST00000446805|2|1),INTRON(MODIFIER|||||CFTR|processed_transcript|CODING|ENST00000546407|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:0:0:0:0,0:29,29:0,0:0,0	107:0:0:0:7,7:100,101:0,0:0,0
7	117248495	.	G	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1419|CFTR|protein_coding|CODING|ENST00000454343|17|1),INTRON(MODIFIER||||1437|CFTR|protein_coding|CODING|ENST00000426809|17|1),INTRON(MODIFIER||||1480|CFTR|protein_coding|CODING|ENST00000003084|18|1),INTRON(MODIFIER|||||AC000111.6|antisense|NON_CODING|ENST00000456270|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:0:0:0:0,0:0,0:30,30:0,0	79:1:0:0:0,0:0,1:68,68:10,10
7	117752414	.	C	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:2:0:0:1,1:27,29:0,0:0,0	98:0:0:0:0,0:93,93:0,0:5,5
7	118520995	.	C	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=EXON(MODIFIER|||||RP11-515K14.1|processed_pseudogene|NON_CODING|ENST00000432585|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:0:0:0:0,0:35,35:0,0:0,0	71:1:0:0:0,0:66,67:0,0:4,4
7	119377503	.	G	T	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-328J2.1|lincRNA|NON_CODING|ENST00000431071|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:0:0:0:0,0:0,0:39,39:0,0	76:0:0:0:0,0:0,0:70,70:6,6
7	119776952	.	G	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||RP4-742N3.1|lincRNA|NON_CODING|ENST00000456062||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:0:0:0:0,0:0,0:32,32:0,0	62:0:0:0:0,0:5,5:57,57:0,0
7	120812814	.	C	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1026|CPED1|protein_coding|CODING|ENST00000310396|16|1),INTRON(MODIFIER||||563|CPED1|protein_coding|CODING|ENST00000423795|13|1),INTRON(MODIFIER||||783|CPED1|protein_coding|CODING|ENST00000450913|15|1),INTRON(MODIFIER|||||CPED1|processed_transcript|CODING|ENST00000466055|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:1:0:0:0,0:32,33:0,0:0,0	74:1:0:0:5,5:67,67:1,1:0,1
7	122542881	.	C	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	28:0:0:0:0,0:28,29:0,0:0,0	86:1:0:0:0,0:77,78:8,8:0,0
7	123535593	.	G	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	27:0:0:0:0,0:0,0:27,27:0,0	75:0:0:0:6,6:0,0:69,69:0,0
7	124438885	.	G	A	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:0:0:0:0,0:0,0:39,39:0,0	82:0:0:0:5,5:0,0:77,78:0,0
7	125727772	.	A	C	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:0:0:0:37,37:0,0:0,0:0,0	80:1:0:0:74,75:5,5:0,0:0,0
7	128370003	rs140953386	C	T	.	PASS	NT=ref;QSS=25;QSS_NT=25;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||133|FAM71F1|protein_coding|CODING|ENST00000466842||1),DOWNSTREAM(MODIFIER|||||FAM71F1|nonsense_mediated_decay|CODING|ENST00000471558||1),DOWNSTREAM(MODIFIER|||||FAM71F1|processed_transcript|CODING|ENST00000469348||1),NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|Cgt/Tgt|R200C|243|FAM71F1|protein_coding|CODING|ENST00000485070|7|1),NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|Cgt/Tgt|R301C|344|FAM71F1|protein_coding|CODING|ENST00000315184|6|1),UTR_3_PRIME(MODIFIER|||||FAM71F1|nonsense_mediated_decay|CODING|ENST00000484425|8|1);RSPOS=128370003;GMAF=0.0009;dbSNPBuildID=134;SSR=0;SAO=0;VP=050000000a05040016000100;GENEINFO=FAM71F1:84691;WGT=1;VC=SNV;NSM;REF;ASP;VLD;KGPhase1;KGPROD;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	44:0:0:0:0,0:44,45:0,0:0,0	79:1:0:0:0,0:67,67:0,0:11,12
7	128727613	.	G	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:0:0:0:0,0:0,0:29,30:0,0	73:0:0:0:5,5:0,0:68,68:0,0
7	128856533	.	T	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||787|SMO|protein_coding|CODING|ENST00000249373||1),DOWNSTREAM(MODIFIER|||||SMO|nonsense_mediated_decay|CODING|ENST00000475779||1),INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||RP11-286H14.8|antisense|NON_CODING|ENST00000466717||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:1:0:0:0,0:0,0:0,0:33,35	83:4:0:0:0,0:9,12:0,0:70,72
7	129021507	.	G	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||181|AHCYL2|protein_coding|CODING|ENST00000466993|2|1),INTRON(MODIFIER||||508|AHCYL2|protein_coding|CODING|ENST00000474594|2|1),INTRON(MODIFIER||||508|AHCYL2|protein_coding|CODING|ENST00000490911|2|1),INTRON(MODIFIER||||509|AHCYL2|protein_coding|CODING|ENST00000446212|2|1),INTRON(MODIFIER||||530|AHCYL2|protein_coding|CODING|ENST00000531335|3|1),INTRON(MODIFIER||||610|AHCYL2|protein_coding|CODING|ENST00000446544|2|1),INTRON(MODIFIER||||611|AHCYL2|protein_coding|CODING|ENST00000325006|2|1),INTRON(MODIFIER||||74|AHCYL2|protein_coding|CODING|ENST00000460109|2|1),INTRON(MODIFIER|||||AHCYL2|processed_transcript|CODING|ENST00000461161|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:0:0:0:0,0:0,0:30,30:0,0	75:0:0:0:0,0:4,4:71,71:0,0
7	129229394	.	G	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:1:0:0:0,0:0,0:29,30:0,0	68:1:0:0:5,6:0,0:62,62:0,0
7	129303180	.	T	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||208|NRF1|protein_coding|CODING|ENST00000454688|3|1),INTRON(MODIFIER||||342|NRF1|protein_coding|CODING|ENST00000539636|2|1),INTRON(MODIFIER||||437|NRF1|protein_coding|CODING|ENST00000353868|2|1),INTRON(MODIFIER||||503|NRF1|protein_coding|CODING|ENST00000223190|2|1),INTRON(MODIFIER||||503|NRF1|protein_coding|CODING|ENST00000393230|2|1),INTRON(MODIFIER||||503|NRF1|protein_coding|CODING|ENST00000393232|2|1),INTRON(MODIFIER||||522|NRF1|protein_coding|CODING|ENST00000311967|2|1),INTRON(MODIFIER||||522|NRF1|protein_coding|CODING|ENST00000393231|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:3:0:0:0,0:0,0:2,3:32,34	74:3:0:0:0,0:7,8:6,7:58,61
7	129436466	.	G	A	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:0:0:0:0,0:0,0:38,38:0,0	68:0:0:0:7,7:0,0:61,61:0,0
7	129780918	.	C	T	.	PASS	NT=ref;QSS=31;QSS_NT=31;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||RP11-775D22.2|antisense|NON_CODING|ENST00000469264||1),UPSTREAM(MODIFIER|||||RP11-775D22.2|antisense|NON_CODING|ENST00000470348||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	47:0:0:0:0,0:47,47:0,0:0,0	71:1:0:0:0,0:58,58:0,0:12,12
7	131331948	.	T	G	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:2:0:0:1,1:0,0:0,0:32,34	69:1:0:0:0,0:0,0:6,6:62,63
7	132221705	.	A	G	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1894|PLXNA4|protein_coding|CODING|ENST00000321063|1|1),INTRON(MODIFIER||||1894|PLXNA4|protein_coding|CODING|ENST00000359827|1|1),INTRON(MODIFIER||||492|PLXNA4|protein_coding|CODING|ENST00000423507|1|1),INTRON(MODIFIER||||522|PLXNA4|protein_coding|CODING|ENST00000378539|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:0:0:0:39,39:0,0:0,0:0,0	85:0:0:0:76,77:0,0:9,9:0,0
7	133420469	.	A	C	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||584|EXOC4|protein_coding|CODING|ENST00000545148|2|1),INTRON(MODIFIER||||873|EXOC4|protein_coding|CODING|ENST00000539845|10|1),INTRON(MODIFIER||||974|EXOC4|protein_coding|CODING|ENST00000253861|10|1),INTRON(MODIFIER|||||EXOC4|processed_transcript|CODING|ENST00000460346|2|1),INTRON(MODIFIER|||||EXOC4|processed_transcript|CODING|ENST00000469115|2|1),INTRON(MODIFIER|||||EXOC4|processed_transcript|CODING|ENST00000482089|2|1),INTRON(MODIFIER|||||EXOC4|processed_transcript|CODING|ENST00000483800|2|1),INTRON(MODIFIER|||||EXOC4|processed_transcript|CODING|ENST00000489931|2|1),UPSTREAM(MODIFIER|||||AC007790.4|processed_pseudogene|NON_CODING|ENST00000439081||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:2:0:0:35,37:0,0:0,1:0,0	77:1:0:0:70,70:6,7:0,0:0,0
7	135727534	.	T	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||AC024084.1|lincRNA|NON_CODING|ENST00000440744|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:0:0:0:0,0:0,0:0,0:32,32	87:0:0:0:0,0:10,10:0,0:77,77
7	135810693	.	C	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||Y_RNA|misc_RNA|NON_CODING|ENST00000383978||1),INTRON(MODIFIER|||||AC009784.3|lincRNA|NON_CODING|ENST00000435996|1|1),INTRON(MODIFIER|||||AC009784.3|lincRNA|NON_CODING|ENST00000445293|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	26:0:0:0:0,0:26,26:0,0:0,0	64:0:0:0:0,0:58,58:0,0:6,6
7	137364736	.	C	A	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1047|DGKI|protein_coding|CODING|ENST00000446122|2|1),INTRON(MODIFIER||||1065|DGKI|protein_coding|CODING|ENST00000288490|2|1),INTRON(MODIFIER||||1068|DGKI|protein_coding|CODING|ENST00000424189|2|1),INTRON(MODIFIER||||734|DGKI|protein_coding|CODING|ENST00000453654|2|1),INTRON(MODIFIER|||||DGKI|processed_transcript|CODING|ENST00000470895|2|1),INTRON(MODIFIER|||||DGKI|processed_transcript|CODING|ENST00000483619|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	22:0:0:0:0,0:22,22:0,0:0,0	53:7:0:0:9,14:37,39:0,0:0,0
7	137505587	.	C	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1047|DGKI|protein_coding|CODING|ENST00000446122|1|1),INTRON(MODIFIER||||1065|DGKI|protein_coding|CODING|ENST00000288490|1|1),INTRON(MODIFIER||||1068|DGKI|protein_coding|CODING|ENST00000424189|1|1),INTRON(MODIFIER||||734|DGKI|protein_coding|CODING|ENST00000453654|2|1),INTRON(MODIFIER|||||DGKI|processed_transcript|CODING|ENST00000470895|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	27:1:0:0:0,1:26,26:0,0:0,0	62:1:0:0:0,0:54,55:0,0:7,7
7	137771410	rs148121827	G	A	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||285|AKR1D1|protein_coding|CODING|ENST00000411726|1|1),INTRON(MODIFIER||||290|AKR1D1|protein_coding|CODING|ENST00000432161|1|1),INTRON(MODIFIER||||326|AKR1D1|protein_coding|CODING|ENST00000242375|1|1),INTRON(MODIFIER||||95|AKR1D1|protein_coding|CODING|ENST00000438242|1|1),INTRON(MODIFIER|||||AKR1D1|processed_transcript|CODING|ENST00000468877|2|1),UPSTREAM(MODIFIER|||||7SK|misc_RNA|NON_CODING|ENST00000410582||1);RSPOS=137771410;GMAF=0.0032;dbSNPBuildID=134;SSR=0;SAO=0;VP=050000080005000016000100;GENEINFO=AKR1D1:6718;WGT=1;VC=SNV;INT;ASP;KGPhase1;KGPROD;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:1:0:0:0,0:0,0:36,36:0,0	81:1:0:0:6,6:0,0:73,74:1,1
7	137939582	.	A	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:1:0:0:30,31:0,0:0,0:0,0	86:2:0:0:76,78:0,0:8,8:0,0
7	138030043	rs200800172	G	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=138030043;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:0:0:0:0,0:0,0:36,37:0,0	103:2:0:0:6,14:0,0:95,99:0,1
7	139825483	.	C	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||809|JHDM1D|protein_coding|CODING|ENST00000006967|6|1),INTRON(MODIFIER||||941|JHDM1D|protein_coding|CODING|ENST00000397560|6|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:1:0:0:0,0:30,31:0,0:0,0	80:2:0:0:0,0:71,73:7,7:0,0
7	139887976	.	G	A	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:0:0:0:0,0:0,0:37,38:0,0	63:0:0:0:5,5:0,0:58,58:0,0
7	140296657	.	T	A	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1009|DENND2A|protein_coding|CODING|ENST00000275884|2|1),INTRON(MODIFIER||||1009|DENND2A|protein_coding|CODING|ENST00000496613|3|1),INTRON(MODIFIER||||1009|DENND2A|protein_coding|CODING|ENST00000537639|1|1),INTRON(MODIFIER||||104|DENND2A|protein_coding|CODING|ENST00000475837|1|1),INTRON(MODIFIER||||795|DENND2A|protein_coding|CODING|ENST00000492720|2|1),INTRON(MODIFIER|||||DENND2A|nonsense_mediated_decay|CODING|ENST00000461883|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	42:1:0:0:0,0:0,0:1,1:40,41	81:2:0:0:6,6:0,0:0,0:73,75
7	140443272	.	A	G	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||766|BRAF|protein_coding|CODING|ENST00000288602|16|1),INTRON(MODIFIER|||||BRAF|nonsense_mediated_decay|CODING|ENST00000479537|4|1),INTRON(MODIFIER|||||BRAF|nonsense_mediated_decay|CODING|ENST00000497784|17|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:0:0:0:40,41:0,0:0,0:0,0	71:0:0:0:66,67:0,0:5,5:0,0
7	142114938	.	A	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||TRBV7-7|TR_V_gene|NON_CODING|ENST00000390377||1),INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||TRBV5-7|TR_V_gene|NON_CODING|ENST00000390378||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	27:0:0:0:27,27:0,0:0,1:0,0	79:1:0:0:69,70:0,0:9,15:0,0
7	142130025	.	A	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||TRBV5-6|TR_V_gene|NON_CODING|ENST00000390375||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:1:0:0:37,38:0,0:0,0:0,0	69:0:0:0:64,64:0,0:0,0:5,7
7	142130055	.	G	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||TRBV5-6|TR_V_gene|NON_CODING|ENST00000390375||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:0:0:0:0,0:0,0:33,33:0,0	68:1:0:0:0,0:0,0:60,60:7,11
7	142143840	.	A	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=EXON(MODIFIER|||||TRBV6-7|TR_V_gene|NON_CODING|ENST00000390373|2|1),UPSTREAM(MODIFIER|||||TRBV7-6|TR_V_gene|NON_CODING|ENST00000390374||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:0:0:0:38,38:1,1:0,0:0,0	90:0:0:0:85,85:0,0:5,5:0,0
7	142154736	.	T	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||TRBV7-5|TR_V_pseudogene|NON_CODING|ENST00000390382||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:1:0:0:0,0:0,0:0,1:29,29	88:0:0:0:0,0:7,10:0,0:81,81
7	142154737	.	G	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||TRBV7-5|TR_V_pseudogene|NON_CODING|ENST00000390382||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:1:0:0:0,0:0,0:30,30:0,1	88:0:0:0:7,10:1,1:80,80:0,0
7	142470199	.	G	A	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||PRSS3P1|unprocessed_pseudogene|NON_CODING|ENST00000503996|2|1),UPSTREAM(MODIFIER|||||PRSS3P1|unprocessed_pseudogene|NON_CODING|ENST00000539842||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:3:0:0:0,0:0,0:37,39:0,0	91:0:0:0:5,7:1,1:85,90:0,0
7	142630440	rs142140429	C	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=SYNONYMOUS_CODING(LOW|SILENT|ctG/ctT|L33|674|TRPV5|protein_coding|CODING|ENST00000439304|1|1),SYNONYMOUS_CODING(LOW|SILENT|ctG/ctT|L39|381|TRPV5|protein_coding|CODING|ENST00000442623|1|1),SYNONYMOUS_CODING(LOW|SILENT|ctG/ctT|L39|729|TRPV5|protein_coding|CODING|ENST00000265310|1|1);RSPOS=142630440;dbSNPBuildID=134;SSR=0;SAO=0;VP=050000000305000002000100;GENEINFO=TRPV5:56302;WGT=1;VC=SNV;REF;SYN;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:0:0:0:0,0:31,31:0,0:0,0	82:0:0:0:5,5:77,78:0,0:0,0
7	143111427	.	A	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||EPHA1-AS1|processed_transcript|NON_CODING|ENST00000421648|1|1),INTRON(MODIFIER|||||EPHA1-AS1|processed_transcript|NON_CODING|ENST00000429289|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:1:0:0:28,31:1,1:0,0:0,0	80:1:0:0:69,73:0,0:10,10:0,1
7	143268422	rs2949711	A	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||CTAGE15P|processed_pseudogene|NON_CODING|ENST00000420911||1),UPSTREAM(MODIFIER|||||CTAGE15P|retrotransposed|NON_CODING|ENST00000447022||1),UPSTREAM(MODIFIER|||||U6|snRNA|NON_CODING|ENST00000516228||1);RSPOS=143268422;GMAF=0.1392;dbSNPBuildID=101;SSR=0;SAO=0;VP=050000000001070116000100;WGT=1;VC=SNV;VLD;G5A;G5;GNO;KGPhase1;KGPROD;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	16:0:0:0:15,15:0,0:0,0:1,1	40:2:0:0:27,28:0,0:11,13:0,0
7	143978232	rs201425945	T	C	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||RP4-545C24.1|antisense|NON_CODING|ENST00000460955||1),INTRON(MODIFIER||||484|ARHGEF35|protein_coding|CODING|ENST00000543357|1|1),INTRON(MODIFIER|||||RP4-798C17.5|unprocessed_pseudogene|NON_CODING|ENST00000378112|5|1),INTRON(MODIFIER|||||RP4-798C17.5|unprocessed_pseudogene|NON_CODING|ENST00000483587|4|1),INTRON(MODIFIER|||||RP4-798C17.6|antisense|NON_CODING|ENST00000461843|1|1),INTRON(MODIFIER|||||RP4-798C17.6|antisense|NON_CODING|ENST00000463561|5|1),INTRON(MODIFIER|||||RP4-798C17.6|antisense|NON_CODING|ENST00000476560|1|1),INTRON(MODIFIER|||||RP4-798C17.6|antisense|NON_CODING|ENST00000478806|1|1),INTRON(MODIFIER|||||RP4-798C17.6|antisense|NON_CODING|ENST00000487102|2|1),INTRON(MODIFIER|||||RP4-798C17.6|antisense|NON_CODING|ENST00000489488|1|1);RSPOS=143978232;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000080005000002000100;WGT=1;VC=SNV;INT;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	27:0:0:0:0,0:0,0:0,0:27,28	41:1:0:0:0,0:7,7:0,0:33,35
7	145523657	rs2372130	G	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=145523657;RV;dbSNPBuildID=100;SSR=0;SAO=0;VP=050100000005000002000100;WGT=1;VC=SNV;SLO;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	17:0:0:0:0,0:0,0:17,17:0,0	49:4:0:0:8,11:0,0:37,38:0,0
7	145723902	.	C	A	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	42:1:0:0:0,0:41,42:0,0:0,0	86:1:0:0:6,6:79,80:0,0:0,0
7	145737613	.	G	C	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:0:0:0:0,0:0,0:40,40:0,0	79:1:0:0:0,0:9,9:69,69:0,1
7	146301254	rs347188	C	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1331|CNTNAP2|protein_coding|CODING|ENST00000361727|1|1);RSPOS=146301254;RV;dbSNPBuildID=79;SSR=0;SAO=0;VP=050000080001000002000100;GENEINFO=CNTNAP2:26047;WGT=1;VC=SNV;INT;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	15:0:0:0:0,0:15,20:0,1:0,0	33:0:0:0:0,0:26,35:7,11:0,0
7	146553330	.	C	T	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1331|CNTNAP2|protein_coding|CODING|ENST00000361727|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:1:0:0:0,0:38,39:0,0:0,0	70:0:0:0:0,0:65,66:0,0:5,5
7	146601806	rs111704230	G	A	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1331|CNTNAP2|protein_coding|CODING|ENST00000361727|3|1);RSPOS=146601806;GMAF=0.0009;dbSNPBuildID=132;SSR=0;SAO=0;VP=050100080001000116000100;GENEINFO=CNTNAP2:26047;WGT=1;VC=SNV;SLO;INT;GNO;KGPhase1;KGPROD;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:1:0:0:0,0:0,0:33,34:0,0	85:5:0:0:10,11:1,1:68,72:1,1
7	146658551	.	G	A	.	PASS	NT=ref;QSS=26;QSS_NT=26;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1331|CNTNAP2|protein_coding|CODING|ENST00000361727|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	51:0:0:0:0,0:0,0:51,51:0,0	75:0:0:0:5,5:0,0:70,70:0,0
7	146841237	.	C	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1331|CNTNAP2|protein_coding|CODING|ENST00000361727|8|1),UPSTREAM(MODIFIER|||||DUTP3|processed_pseudogene|NON_CODING|ENST00000450025||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:0:0:0:0,0:34,34:0,0:0,0	78:0:0:0:0,0:69,69:0,0:9,9
7	147630363	.	A	G	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1331|CNTNAP2|protein_coding|CODING|ENST00000361727|14|1),INTRON(MODIFIER||||184|CNTNAP2|protein_coding|CODING|ENST00000455301|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:0:0:0:36,36:0,0:0,0:0,0	76:0:0:0:70,70:0,0:6,6:0,0
7	148121710	.	G	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||1331|CNTNAP2|protein_coding|CODING|ENST00000361727||1),DOWNSTREAM(MODIFIER|||||CNTNAP2|processed_transcript|CODING|ENST00000463592||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:1:0:0:0,0:0,0:30,31:0,0	75:1:0:0:8,8:0,0:66,67:0,0
7	148674607	.	A	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:0:0:0:29,29:0,0:0,0:0,0	67:5:0:0:54,58:8,11:0,0:0,0
7	149733191	.	G	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||RP11-545G3.1|lincRNA|NON_CODING|ENST00000492054||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:2:0:0:1,1:0,0:35,37:0,0	68:8:0:0:0,0:4,6:56,64:0,0
7	149738268	.	A	T	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-545G3.1|lincRNA|NON_CODING|ENST00000492054|1|1),UPSTREAM(MODIFIER|||||RP11-545G3.1|lincRNA|NON_CODING|ENST00000493400||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:1:0:0:34,35:0,0:0,0:0,2	71:2:0:0:60,61:1,1:0,0:8,16
7	150095103	.	A	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||143|ZNF775|protein_coding|CODING|ENST00000478789||1),DOWNSTREAM(MODIFIER||||165|ZNF775|protein_coding|CODING|ENST00000490973||1),INTRON(MODIFIER|||||ZNF775|processed_transcript|CODING|ENST00000483664|2|1),INTRON(MODIFIER|||||ZNF775|processed_transcript|CODING|ENST00000486297|2|1),NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|Agc/Cgc|S512R|537|ZNF775|protein_coding|CODING|ENST00000329630|3|1),UPSTREAM(MODIFIER|||||ZNF775|processed_transcript|CODING|ENST00000476489||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:0:0:0:33,33:0,0:1,1:0,0	75:0:0:0:71,72:4,5:0,0:0,0
7	150405871	.	C	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->AC;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:0:0:0:0,0:33,33:0,0:0,0	71:2:0:0:5,5:64,67:0,0:0,0
7	151905988	.	T	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||4911|MLL3|protein_coding|CODING|ENST00000262189|23|1),INTRON(MODIFIER||||4968|MLL3|protein_coding|CODING|ENST00000355193|23|1),INTRON(MODIFIER|||||MLL3|nonsense_mediated_decay|CODING|ENST00000558084|23|1),INTRON(MODIFIER|||||MLL3|retained_intron|CODING|ENST00000473186|9|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:1:0:0:0,0:0,0:0,0:29,30	68:4:0:0:0,1:5,5:0,0:59,63
7	151905993	.	A	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||4911|MLL3|protein_coding|CODING|ENST00000262189|23|1),INTRON(MODIFIER||||4968|MLL3|protein_coding|CODING|ENST00000355193|23|1),INTRON(MODIFIER|||||MLL3|nonsense_mediated_decay|CODING|ENST00000558084|23|1),INTRON(MODIFIER|||||MLL3|retained_intron|CODING|ENST00000473186|9|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:1:0:0:30,31:0,0:0,0:0,0	68:4:0:0:59,64:0,0:5,5:0,0
7	151932654	rs78448345	C	A	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||4911|MLL3|protein_coding|CODING|ENST00000262189|16|1),INTRON(MODIFIER||||4968|MLL3|protein_coding|CODING|ENST00000355193|16|1),INTRON(MODIFIER|||||MLL3|nonsense_mediated_decay|CODING|ENST00000558084|16|1),INTRON(MODIFIER|||||MLL3|retained_intron|CODING|ENST00000473186|2|1);RSPOS=151932654;dbSNPBuildID=131;SSR=0;SAO=0;VP=050100080005040102000100;GENEINFO=MLL3:58508;WGT=1;VC=SNV;SLO;INT;ASP;VLD;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:1:0:0:0,0:39,40:0,0:0,0	91:2:0:0:11,14:78,90:0,0:0,0
7	151932714	.	G	A	.	PASS	NT=ref;QSS=24;QSS_NT=24;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||4911|MLL3|protein_coding|CODING|ENST00000262189|16|1),INTRON(MODIFIER||||4968|MLL3|protein_coding|CODING|ENST00000355193|16|1),INTRON(MODIFIER|||||MLL3|nonsense_mediated_decay|CODING|ENST00000558084|16|1),INTRON(MODIFIER|||||MLL3|retained_intron|CODING|ENST00000473186|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	48:1:0:0:0,0:0,0:47,60:0,0	123:2:0:0:14,18:0,0:107,139:0,0
7	151932722	rs111724162	A	G	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||4911|MLL3|protein_coding|CODING|ENST00000262189|16|1),INTRON(MODIFIER||||4968|MLL3|protein_coding|CODING|ENST00000355193|16|1),INTRON(MODIFIER|||||MLL3|nonsense_mediated_decay|CODING|ENST00000558084|16|1),INTRON(MODIFIER|||||MLL3|retained_intron|CODING|ENST00000473186|2|1);RSPOS=151932722;dbSNPBuildID=132;SSR=0;SAO=0;VP=050100080005000102000100;GENEINFO=MLL3:58508;WGT=1;VC=SNV;SLO;INT;ASP;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	54:2:0:0:51,67:0,0:1,1:0,0	128:6:0:0:110,146:0,0:12,17:0,0
7	152091427	.	C	G	.	PASS	NT=ref;QSS=25;QSS_NT=25;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||154|MLL3|protein_coding|CODING|ENST00000452749|1|1),INTRON(MODIFIER||||4911|MLL3|protein_coding|CODING|ENST00000262189|1|1),INTRON(MODIFIER||||4968|MLL3|protein_coding|CODING|ENST00000355193|1|1),INTRON(MODIFIER|||||MLL3|nonsense_mediated_decay|CODING|ENST00000558084|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	55:1:0:0:0,0:54,63:0,0:0,0	94:2:0:0:0,0:86,99:6,8:0,0
7	153178911	.	T	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:1:0:0:0,0:0,0:0,0:33,34	81:0:0:0:0,0:4,4:0,0:77,77
7	153622605	.	T	C	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||801|DPP6|protein_coding|CODING|ENST00000404039|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	42:3:0:0:0,0:0,0:0,0:39,42	90:2:0:0:0,0:6,6:0,1:82,83
7	153756897	rs10253502	C	G	.	PASS	NT=ref;QSS=30;QSS_NT=30;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||353|DPP6|protein_coding|CODING|ENST00000406326|1|1),INTRON(MODIFIER||||801|DPP6|protein_coding|CODING|ENST00000404039|1|1),INTRON(MODIFIER||||865|DPP6|protein_coding|CODING|ENST00000377770|1|1),INTRON(MODIFIER|||||AC006019.3|antisense|NON_CODING|ENST00000542406|4|1),UPSTREAM(MODIFIER|||||AC006019.3|antisense|NON_CODING|ENST00000366161||1),UPSTREAM(MODIFIER|||||AC006019.3|antisense|NON_CODING|ENST00000425591||1),UPSTREAM(MODIFIER|||||AC006019.3|antisense|NON_CODING|ENST00000454405||1);RSPOS=153756897;dbSNPBuildID=119;SSR=0;SAO=0;VP=050000000001040102000100;WGT=1;VC=SNV;VLD;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:1:0:0:0,0:30,33:0,0:0,0	60:1:0:0:0,0:46,50:13,13:0,0
7	154945179	.	C	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:1:0:0:0,0:29,31:0,0:0,0	72:1:0:0:0,0:62,63:0,0:9,9
7	155120331	.	C	T	.	PASS	NT=ref;QSS=23;QSS_NT=23;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	41:6:0:0:0,5:35,106:0,0:0,4	89:14:0:0:3,12:60,201:0,2:12,30
7	155126164	.	C	G	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:2:0:0:0,0:35,44:0,0:0,0	74:4:0:0:0,0:64,78:6,7:0,0
7	155130624	.	C	G	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:8:1:0:0,0:25,38:0,0:0,0	52:18:0:0:0,0:29,51:5,5:0,0
7	155238609	.	G	A	.	PASS	NT=ref;QSS=24;QSS_NT=24;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||AC008060.8|antisense|NON_CODING|ENST00000419225|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	53:5:0:0:0,1:0,0:48,68:0,0	139:3:0:0:9,14:0,0:127,158:0,0
7	155258096	.	C	A	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||333|EN2|protein_coding|CODING|ENST00000297375||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:1:0:0:0,0:34,35:0,0:0,0	86:0:0:0:5,5:80,80:0,0:1,1
7	155297690	.	T	C	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||92|CNPY1|protein_coding|CODING|ENST00000321736|3|1),INTRON(MODIFIER||||92|CNPY1|protein_coding|CODING|ENST00000406197|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:0:0:0:0,0:0,0:0,0:37,37	87:1:0:0:0,0:7,7:0,0:79,80
7	155366286	rs142794629	A	G	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=155366286;GMAF=0.0018;dbSNPBuildID=134;SSR=0;SAO=0;VP=050000000005000014000100;WGT=1;VC=SNV;ASP;KGPhase1;KGPROD	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:1:0:0:35,37:0,0:0,0:0,0	80:2:0:0:71,76:1,1:6,6:0,0
7	155408211	.	C	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||72|AC009403.2|protein_coding|CODING|ENST00000401694|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	24:3:0:0:0,0:20,26:0,0:1,4	84:0:0:0:0,0:69,85:13,16:2,3
7	155409797	.	T	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER||||72|AC009403.2|protein_coding|CODING|ENST00000401694|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	19:1:0:0:0,0:0,2:0,1:18,26	44:1:0:0:0,0:8,13:1,1:34,45
7	156058828	rs71542575	C	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=156058828;dbSNPBuildID=130;SSR=0;SAO=0;VP=050100000001000102000100;WGT=1;VC=SNV;SLO;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:1:0:0:0,0:38,47:0,0:0,1	104:7:0:0:0,0:84,117:0,1:13,22
7	156734352	.	T	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||RP5-1121A15.3|lincRNA|NON_CODING|ENST00000427073||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	22:4:0:0:0,1:0,0:0,1:18,20	29:3:0:0:1,1:5,5:0,1:20,23
7	156897583	.	T	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:2:0:0:0,0:0,0:0,0:30,33	68:0:0:0:5,5:0,0:0,0:63,63
7	157234110	.	T	C	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:1:0:0:0,0:0,0:0,0:39,40	94:2:0:0:0,0:6,6:0,0:86,89
7	157238992	.	A	G	.	PASS	NT=ref;QSS=25;QSS_NT=25;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	51:1:0:0:50,51:0,0:0,0:0,0	89:0:0:0:82,82:0,0:7,7:0,0
7	157239077	.	T	C	.	PASS	NT=ref;QSS=24;QSS_NT=24;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	48:0:0:0:0,0:0,0:0,0:48,48	85:1:0:0:0,0:8,8:0,0:76,77
7	157253992	rs6956342	G	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||AC006372.4|lincRNA|NON_CODING|ENST00000444158||1);RSPOS=157253992;dbSNPBuildID=116;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:4:0:0:0,0:0,2:27,43:0,0	72:16:5:0:0,0:7,22:49,71:0,1
7	157304280	.	A	G	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||AC006372.6|antisense|NON_CODING|ENST00000433660||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:0:0:0:40,40:0,0:0,0:0,0	89:1:0:0:81,82:1,1:6,6:0,0
7	157618889	.	C	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1015|PTPRN2|protein_coding|CODING|ENST00000389418|12|1),INTRON(MODIFIER||||1038|PTPRN2|protein_coding|CODING|ENST00000404321|12|1),INTRON(MODIFIER||||977|PTPRN2|protein_coding|CODING|ENST00000409483|11|1),INTRON(MODIFIER||||986|PTPRN2|protein_coding|CODING|ENST00000389413|11|1),INTRON(MODIFIER||||998|PTPRN2|protein_coding|CODING|ENST00000389416|11|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:3:0:0:0,0:35,40:0,0:0,0	91:2:0:0:0,0:83,96:0,0:6,6
7	157630650	.	C	T	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1015|PTPRN2|protein_coding|CODING|ENST00000389418|12|1),INTRON(MODIFIER||||1038|PTPRN2|protein_coding|CODING|ENST00000404321|12|1),INTRON(MODIFIER||||977|PTPRN2|protein_coding|CODING|ENST00000409483|11|1),INTRON(MODIFIER||||986|PTPRN2|protein_coding|CODING|ENST00000389413|11|1),INTRON(MODIFIER||||998|PTPRN2|protein_coding|CODING|ENST00000389416|11|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	43:1:0:0:0,0:42,43:0,0:0,0	85:0:0:0:0,0:80,81:0,0:5,5
7	157675998	.	T	C	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1015|PTPRN2|protein_coding|CODING|ENST00000389418|12|1),INTRON(MODIFIER||||1038|PTPRN2|protein_coding|CODING|ENST00000404321|12|1),INTRON(MODIFIER||||977|PTPRN2|protein_coding|CODING|ENST00000409483|11|1),INTRON(MODIFIER||||986|PTPRN2|protein_coding|CODING|ENST00000389413|11|1),INTRON(MODIFIER||||998|PTPRN2|protein_coding|CODING|ENST00000389416|11|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:4:0:0:1,2:0,0:0,0:33,36	78:4:0:0:1,2:7,10:0,0:66,66
7	157703204	.	A	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1015|PTPRN2|protein_coding|CODING|ENST00000389418|11|1),INTRON(MODIFIER||||1038|PTPRN2|protein_coding|CODING|ENST00000404321|11|1),INTRON(MODIFIER||||977|PTPRN2|protein_coding|CODING|ENST00000409483|10|1),INTRON(MODIFIER||||986|PTPRN2|protein_coding|CODING|ENST00000389413|10|1),INTRON(MODIFIER||||998|PTPRN2|protein_coding|CODING|ENST00000389416|10|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:2:0:0:30,33:0,0:0,0:0,0	76:0:1:0:69,72:3,3:4,4:0,0
7	157703229	.	G	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1015|PTPRN2|protein_coding|CODING|ENST00000389418|11|1),INTRON(MODIFIER||||1038|PTPRN2|protein_coding|CODING|ENST00000404321|11|1),INTRON(MODIFIER||||977|PTPRN2|protein_coding|CODING|ENST00000409483|10|1),INTRON(MODIFIER||||986|PTPRN2|protein_coding|CODING|ENST00000389413|10|1),INTRON(MODIFIER||||998|PTPRN2|protein_coding|CODING|ENST00000389416|10|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:1:0:0:0,0:0,0:36,38:0,0	80:0:0:0:4,4:1,1:75,78:0,0
7	157709428	.	T	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER||||1015|PTPRN2|protein_coding|CODING|ENST00000389418|11|1),INTRON(MODIFIER||||1038|PTPRN2|protein_coding|CODING|ENST00000404321|11|1),INTRON(MODIFIER||||977|PTPRN2|protein_coding|CODING|ENST00000409483|10|1),INTRON(MODIFIER||||986|PTPRN2|protein_coding|CODING|ENST00000389413|10|1),INTRON(MODIFIER||||998|PTPRN2|protein_coding|CODING|ENST00000389416|10|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:0:0:0:0,0:0,0:0,1:34,35	87:3:0:0:0,0:4,4:0,0:80,91
7	157800423	.	T	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1015|PTPRN2|protein_coding|CODING|ENST00000389418|11|1),INTRON(MODIFIER||||1038|PTPRN2|protein_coding|CODING|ENST00000404321|11|1),INTRON(MODIFIER||||977|PTPRN2|protein_coding|CODING|ENST00000409483|10|1),INTRON(MODIFIER||||986|PTPRN2|protein_coding|CODING|ENST00000389413|10|1),INTRON(MODIFIER||||998|PTPRN2|protein_coding|CODING|ENST00000389416|10|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:0:0:0:0,0:0,0:0,0:31,31	110:1:0:0:0,0:7,8:0,0:102,105
7	157957124	rs62480766	A	G	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=AA->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER||||1015|PTPRN2|protein_coding|CODING|ENST00000389418|6|1),INTRON(MODIFIER||||1038|PTPRN2|protein_coding|CODING|ENST00000404321|6|1),INTRON(MODIFIER||||977|PTPRN2|protein_coding|CODING|ENST00000409483|5|1),INTRON(MODIFIER||||986|PTPRN2|protein_coding|CODING|ENST00000389413|6|1),INTRON(MODIFIER||||998|PTPRN2|protein_coding|CODING|ENST00000389416|5|1);RSPOS=157957124;dbSNPBuildID=129;SSR=0;SAO=0;VP=050000080001040002000100;GENEINFO=PTPRN2:5799;WGT=1;VC=SNV;INT;VLD;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	24:2:0:0:22,24:0,0:0,0:0,0	29:5:0:0:18,23:0,0:6,6:0,0
7	158157094	.	G	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1015|PTPRN2|protein_coding|CODING|ENST00000389418|2|1),INTRON(MODIFIER||||1038|PTPRN2|protein_coding|CODING|ENST00000404321|2|1),INTRON(MODIFIER||||977|PTPRN2|protein_coding|CODING|ENST00000409483|2|1),INTRON(MODIFIER||||986|PTPRN2|protein_coding|CODING|ENST00000389413|2|1),INTRON(MODIFIER||||998|PTPRN2|protein_coding|CODING|ENST00000389416|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:1:0:0:0,0:0,0:33,34:0,0	70:2:0:0:4,4:0,0:64,68:0,1
7	158157106	rs13311887	A	C	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1015|PTPRN2|protein_coding|CODING|ENST00000389418|2|1),INTRON(MODIFIER||||1038|PTPRN2|protein_coding|CODING|ENST00000404321|2|1),INTRON(MODIFIER||||977|PTPRN2|protein_coding|CODING|ENST00000409483|2|1),INTRON(MODIFIER||||986|PTPRN2|protein_coding|CODING|ENST00000389413|2|1),INTRON(MODIFIER||||998|PTPRN2|protein_coding|CODING|ENST00000389416|1|1);RSPOS=158157106;dbSNPBuildID=121;SSR=0;SAO=0;VP=050000080001000002000100;GENEINFO=PTPRN2:5799;WGT=1;VC=SNV;INT;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:0:0:0:36,36:0,0:0,0:0,0	74:2:0:0:63,67:9,10:0,0:0,0
7	158246172	rs57452631	A	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1015|PTPRN2|protein_coding|CODING|ENST00000389418|2|1),INTRON(MODIFIER||||1038|PTPRN2|protein_coding|CODING|ENST00000404321|2|1),INTRON(MODIFIER||||977|PTPRN2|protein_coding|CODING|ENST00000409483|2|1),INTRON(MODIFIER||||986|PTPRN2|protein_coding|CODING|ENST00000389413|2|1),INTRON(MODIFIER||||998|PTPRN2|protein_coding|CODING|ENST00000389416|1|1);RSPOS=158246172;dbSNPBuildID=129;SSR=0;SAO=0;VP=050000080001000002000100;GENEINFO=PTPRN2:5799;WGT=1;VC=SNV;INT;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:0:0:0:34,34:0,0:0,0:0,0	60:0:0:0:56,60:0,0:4,4:0,0
7	158316381	.	G	A	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1015|PTPRN2|protein_coding|CODING|ENST00000389418|1|1),INTRON(MODIFIER||||1038|PTPRN2|protein_coding|CODING|ENST00000404321|1|1),INTRON(MODIFIER||||977|PTPRN2|protein_coding|CODING|ENST00000409483|1|1),INTRON(MODIFIER||||986|PTPRN2|protein_coding|CODING|ENST00000389413|1|1),INTRON(MODIFIER||||998|PTPRN2|protein_coding|CODING|ENST00000389416|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	44:6:0:0:0,0:0,1:38,63:0,0	90:11:0:0:9,9:1,3:69,117:0,0
7	158329213	.	C	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1015|PTPRN2|protein_coding|CODING|ENST00000389418|1|1),INTRON(MODIFIER||||1038|PTPRN2|protein_coding|CODING|ENST00000404321|1|1),INTRON(MODIFIER||||977|PTPRN2|protein_coding|CODING|ENST00000409483|1|1),INTRON(MODIFIER||||986|PTPRN2|protein_coding|CODING|ENST00000389413|1|1),INTRON(MODIFIER||||998|PTPRN2|protein_coding|CODING|ENST00000389416|1|1),UPSTREAM(MODIFIER|||||AC078942.1|antisense|NON_CODING|ENST00000448698||1),UPSTREAM(MODIFIER|||||MIR595|miRNA|NON_CODING|ENST00000384905||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:1:0:0:0,0:32,33:0,0:0,0	65:1:0:0:0,0:59,62:0,0:5,6
7	158513918	.	A	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||AC019084.7|processed_pseudogene|NON_CODING|ENST00000457337||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	23:0:0:0:23,24:0,0:0,0:0,0	65:0:0:0:56,56:0,0:9,9:0,0
7	158513941	.	A	G	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||AC019084.7|processed_pseudogene|NON_CODING|ENST00000457337||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	17:1:0:0:16,18:0,0:0,0:0,0	53:0:0:0:40,40:0,0:13,13:0,0
7	158709093	rs71547582	G	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1066|WDR60|protein_coding|CODING|ENST00000407559|14|1),INTRON(MODIFIER|||||WDR60|nonsense_mediated_decay|CODING|ENST00000444851|10|1),INTRON(MODIFIER|||||WDR60|retained_intron|CODING|ENST00000467220|9|1);RSPOS=158709093;dbSNPBuildID=130;SSR=0;SAO=0;VP=050100080001000102000100;GENEINFO=WDR60:55112;WGT=1;VC=SNV;SLO;INT;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	28:0:0:0:0,1:0,1:28,74:0,0	43:0:3:0:0,1:6,20:37,124:0,0
7	158776600	.	C	T	.	PASS	NT=ref;QSS=27;QSS_NT=27;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	44:0:0:0:0,0:44,44:0,0:0,0	75:0:0:0:0,0:63,63:0,0:12,12
7	158780812	.	G	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:0:0:0:0,0:0,0:32,33:0,0	73:3:0:0:8,11:1,2:61,61:0,0
7	158795588	.	T	G	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||AC004863.6|lincRNA|NON_CODING|ENST00000417032||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	42:0:0:0:1,1:0,0:0,0:41,42	87:0:0:0:0,0:0,0:7,7:80,81
7	158817333	.	A	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||438|VIPR2|protein_coding|CODING|ENST00000262178||1),DOWNSTREAM(MODIFIER|||||AC004863.6|lincRNA|NON_CODING|ENST00000447563||1),INTRON(MODIFIER|||||AC004863.6|lincRNA|NON_CODING|ENST00000413238|3|1),INTRON(MODIFIER|||||AC004863.6|lincRNA|NON_CODING|ENST00000438049|4|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:2:0:0:29,30:0,1:0,0:0,0	73:3:0:0:62,64:1,1:7,9:0,0
8	45292	.	A	G	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:0:0:0:38,44:0,0:0,0:0,0	58:0:0:0:53,69:0,0:5,5:0,0
8	46361	.	T	G	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	43:2:0:0:0,0:0,0:0,0:41,51	100:1:0:0:0,0:0,0:7,9:92,109
8	325055	rs200156067	A	G	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||FAM87A|processed_pseudogene|NON_CODING|ENST00000330148||1),DOWNSTREAM(MODIFIER|||||FAM87A|transcribed_processed_pseudogene|NON_CODING|ENST00000518012||1),DOWNSTREAM(MODIFIER|||||RP11-63E5.8|processed_transcript|NON_CODING|ENST00000523195||1),INTERGENIC(MODIFIER||||||||||1);RSPOS=325055;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:1:0:0:36,37:0,0:1,1:0,0	65:8:0:0:45,45:1,2:11,19:0,0
8	452934	.	T	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||185|C8orf42|protein_coding|CODING|ENST00000324079|1|1),INTRON(MODIFIER||||198|C8orf42|protein_coding|CODING|ENST00000427263|1|1),INTRON(MODIFIER||||198|C8orf42|protein_coding|CODING|ENST00000523656|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	25:1:0:0:2,2:1,1:0,0:21,22	75:7:0:0:2,3:1,3:10,15:55,56
8	485860	.	G	C	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||185|C8orf42|protein_coding|CODING|ENST00000324079|1|1),INTRON(MODIFIER||||198|C8orf42|protein_coding|CODING|ENST00000427263|1|1),INTRON(MODIFIER||||198|C8orf42|protein_coding|CODING|ENST00000523656|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:0:0:0:0,0:0,0:34,34:0,0	61:1:0:0:0,0:6,6:54,55:0,0
8	579836	.	A	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||345|ERICH1|protein_coding|CODING|ENST00000522706|3|1),INTRON(MODIFIER|||||ERICH1|processed_transcript|CODING|ENST00000519909|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:0:0:0:28,31:1,1:0,0:0,0	59:6:0:0:46,51:0,2:0,0:7,14
8	619007	.	C	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||ERICH1|processed_transcript|CODING|ENST00000518277||1),DOWNSTREAM(MODIFIER|||||ERICH1|processed_transcript|CODING|ENST00000518313||1),DOWNSTREAM(MODIFIER|||||ERICH1|processed_transcript|CODING|ENST00000518895||1),DOWNSTREAM(MODIFIER|||||ERICH1|processed_transcript|CODING|ENST00000524138||1),EXON(MODIFIER|||||ERICH1|retained_intron|CODING|ENST00000523053|1|1),INTRON(MODIFIER||||345|ERICH1|protein_coding|CODING|ENST00000522706|2|1),INTRON(MODIFIER||||443|ERICH1|protein_coding|CODING|ENST00000262109|4|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	44:1:0:0:0,0:42,44:1,1:0,0	63:1:0:0:0,0:54,57:8,8:0,0
8	619019	.	A	G	.	PASS	NT=ref;QSS=25;QSS_NT=25;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||ERICH1|processed_transcript|CODING|ENST00000518277||1),DOWNSTREAM(MODIFIER|||||ERICH1|processed_transcript|CODING|ENST00000518313||1),DOWNSTREAM(MODIFIER|||||ERICH1|processed_transcript|CODING|ENST00000518895||1),DOWNSTREAM(MODIFIER|||||ERICH1|processed_transcript|CODING|ENST00000524138||1),EXON(MODIFIER|||||ERICH1|retained_intron|CODING|ENST00000523053|1|1),INTRON(MODIFIER||||345|ERICH1|protein_coding|CODING|ENST00000522706|2|1),INTRON(MODIFIER||||443|ERICH1|protein_coding|CODING|ENST00000262109|4|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	42:1:0:0:41,44:0,0:0,0:0,0	60:1:0:0:49,51:1,2:9,9:0,0
8	861303	.	C	G	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||ERICH1-AS1|lincRNA|NON_CODING|ENST00000577187||1),INTRON(MODIFIER|||||ERICH1-AS1|lincRNA|NON_CODING|ENST00000522092|3|1),INTRON(MODIFIER|||||ERICH1-AS1|lincRNA|NON_CODING|ENST00000524139|2|1),INTRON(MODIFIER|||||ERICH1-AS1|lincRNA|NON_CODING|ENST00000578889|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:0:0:0:0,0:31,31:0,0:0,0	71:1:0:0:0,0:63,64:7,7:0,0
8	915146	.	T	A	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||ERICH1-AS1|lincRNA|NON_CODING|ENST00000522092|3|1),INTRON(MODIFIER|||||ERICH1-AS1|lincRNA|NON_CODING|ENST00000524139|2|1),INTRON(MODIFIER|||||ERICH1-AS1|lincRNA|NON_CODING|ENST00000578889|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:2:0:0:0,0:0,1:1,3:37,40	75:2:0:0:6,6:1,2:0,0:66,74
8	972416	.	G	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||ERICH1-AS1|lincRNA|NON_CODING|ENST00000522092|3|1),INTRON(MODIFIER|||||ERICH1-AS1|lincRNA|NON_CODING|ENST00000524139|3|1),INTRON(MODIFIER|||||ERICH1-AS1|lincRNA|NON_CODING|ENST00000578889|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:3:0:0:0,0:0,0:29,32:0,0	70:8:0:0:0,0:8,13:54,57:0,0
8	978491	.	C	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||ERICH1-AS1|lincRNA|NON_CODING|ENST00000522092|3|1),INTRON(MODIFIER|||||ERICH1-AS1|lincRNA|NON_CODING|ENST00000524139|3|1),INTRON(MODIFIER|||||ERICH1-AS1|lincRNA|NON_CODING|ENST00000578889|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:1:0:0:0,0:34,36:0,0:0,0	75:8:1:0:0,0:62,70:0,0:5,6
8	986239	.	A	G	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=AA->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=DOWNSTREAM(MODIFIER|||||ERICH1-AS1|lincRNA|NON_CODING|ENST00000524139||1),INTRON(MODIFIER|||||ERICH1-AS1|lincRNA|NON_CODING|ENST00000522092|3|1),INTRON(MODIFIER|||||ERICH1-AS1|lincRNA|NON_CODING|ENST00000578889|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	45:0:0:0:44,45:1,1:0,1:0,0	93:3:0:0:83,92:0,0:7,7:0,0
8	1205700	rs112560410	T	C	.	PASS	NT=ref;QSS=34;QSS_NT=34;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||CTD-2281E23.2|lincRNA|NON_CODING|ENST00000520524|1|1),INTRON(MODIFIER|||||CTD-2281E23.2|lincRNA|NON_CODING|ENST00000522989|1|1),UPSTREAM(MODIFIER|||||CTD-2281E23.2|retained_intron|NON_CODING|ENST00000522626||1);RSPOS=1205700;dbSNPBuildID=132;SSR=0;SAO=0;VP=050100000005000102000100;WGT=1;VC=SNV;SLO;ASP;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:1:1:0:0,0:1,1:1,1:34,35	72:7:0:0:0,0:19,21:0,0:46,53
8	1245812	.	A	G	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||CTD-2281E23.1|lincRNA|NON_CODING|ENST00000521186|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:1:0:0:38,52:0,0:1,1:0,0	65:1:0:0:54,88:1,1:9,12:0,0
8	1263399	rs148769896	T	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=1263399;GMAF=0.0261;dbSNPBuildID=134;SSR=0;SAO=0;VP=050000000005000016000100;WGT=1;VC=SNV;ASP;KGPhase1;KGPROD;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:2:0:0:0,1:0,1:0,0:36,36	80:0:0:0:0,0:6,6:0,0:74,74
8	1295478	.	C	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:1:0:0:0,0:30,31:1,1:0,0	71:4:0:0:6,11:61,64:0,1:0,0
8	1412687	.	A	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	46:2:0:0:43,44:1,3:0,0:0,0	79:8:0:0:60,65:11,18:0,0:0,1
8	1431699	.	A	G	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	42:1:0:0:41,42:0,0:0,0:0,0	82:6:0:0:70,73:0,1:6,8:0,0
8	1569508	.	T	C	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=EXON(MODIFIER|||||RP11-666I19.2|antisense|NON_CODING|ENST00000518009|1|1),INTRON(MODIFIER||||975|DLGAP2|protein_coding|CODING|ENST00000421627|3|1),UPSTREAM(MODIFIER|||||RP11-666I19.2|antisense|NON_CODING|ENST00000518063||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:2:0:0:0,0:0,0:0,1:35,36	87:1:0:0:0,0:4,5:0,0:82,83
8	1590104	.	C	A	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||975|DLGAP2|protein_coding|CODING|ENST00000421627|5|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	20:2:0:0:0,0:18,23:0,0:0,0	42:2:0:0:8,10:32,42:0,1:0,0
8	1627302	.	C	G	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||DLGAP2|retained_intron|CODING|ENST00000522499||1),INTRON(MODIFIER||||975|DLGAP2|protein_coding|CODING|ENST00000421627|9|1),INTRON(MODIFIER|||||DLGAP2|processed_transcript|CODING|ENST00000524065|2|1),INTRON(MODIFIER|||||DLGAP2|retained_intron|CODING|ENST00000518530|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:1:0:0:0,0:32,36:0,0:0,0	75:4:0:0:0,1:64,73:7,7:0,1
8	2016436	.	T	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=TT->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER||||1465|MYOM2|protein_coding|CODING|ENST00000262113|6|1),INTRON(MODIFIER||||890|MYOM2|protein_coding|CODING|ENST00000523438|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:2:0:0:0,0:0,1:0,0:36,38	101:5:0:0:0,0:11,15:2,2:83,86
8	2187240	rs200274661	T	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=2187240;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:2:0:0:0,0:0,0:0,0:32,34	64:0:0:0:0,0:6,6:0,0:58,70
8	3011760	.	G	C	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||2109|CSMD1|protein_coding|CODING|ENST00000539096|39|1),INTRON(MODIFIER||||3387|CSMD1|protein_coding|CODING|ENST00000542608|39|1),INTRON(MODIFIER||||3388|CSMD1|protein_coding|CODING|ENST00000400186|40|1),INTRON(MODIFIER||||3564|CSMD1|protein_coding|CODING|ENST00000537824|39|1),INTRON(MODIFIER||||3565|CSMD1|protein_coding|CODING|ENST00000520002|40|1),INTRON(MODIFIER|||||CSMD1|processed_transcript|CODING|ENST00000520451|4|1),INTRON(MODIFIER|||||CSMD1|processed_transcript|CODING|ENST00000523387|15|1),INTRON(MODIFIER|||||CSMD1|retained_intron|CODING|ENST00000523488|23|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:1:0:0:0,0:0,0:35,36:0,0	85:1:0:0:0,0:6,6:78,79:0,0
8	3232653	.	A	G	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||2109|CSMD1|protein_coding|CODING|ENST00000539096|18|1),INTRON(MODIFIER||||3387|CSMD1|protein_coding|CODING|ENST00000542608|18|1),INTRON(MODIFIER||||3388|CSMD1|protein_coding|CODING|ENST00000400186|19|1),INTRON(MODIFIER||||3564|CSMD1|protein_coding|CODING|ENST00000537824|18|1),INTRON(MODIFIER||||3565|CSMD1|protein_coding|CODING|ENST00000520002|19|1),INTRON(MODIFIER|||||CSMD1|retained_intron|CODING|ENST00000523488|2|1),INTRON(MODIFIER|||||RP11-279L11.1|sense_intronic|NON_CODING|ENST00000520815|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:0:0:0:38,38:0,0:0,0:0,0	77:1:0:0:68,69:1,1:7,7:0,0
8	3415995	rs10094583	A	G	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||2109|CSMD1|protein_coding|CODING|ENST00000539096|10|1),INTRON(MODIFIER||||3387|CSMD1|protein_coding|CODING|ENST00000542608|10|1),INTRON(MODIFIER||||3388|CSMD1|protein_coding|CODING|ENST00000400186|11|1),INTRON(MODIFIER||||3564|CSMD1|protein_coding|CODING|ENST00000537824|10|1),INTRON(MODIFIER||||3565|CSMD1|protein_coding|CODING|ENST00000520002|11|1);RSPOS=3415995;dbSNPBuildID=119;SSR=0;SAO=0;VP=050000080005000102000100;GENEINFO=CSMD1:64478;WGT=1;VC=SNV;INT;ASP;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:1:0:0:30,31:1,1:0,0:0,0	58:4:0:0:45,46:0,1:9,11:0,0
8	3653963	.	T	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||2109|CSMD1|protein_coding|CODING|ENST00000539096|5|1),INTRON(MODIFIER||||3387|CSMD1|protein_coding|CODING|ENST00000542608|5|1),INTRON(MODIFIER||||3388|CSMD1|protein_coding|CODING|ENST00000400186|5|1),INTRON(MODIFIER||||3564|CSMD1|protein_coding|CODING|ENST00000537824|5|1),INTRON(MODIFIER||||3565|CSMD1|protein_coding|CODING|ENST00000520002|5|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:6:0:0:0,0:0,0:0,0:31,38	91:21:0:0:0,0:5,5:0,0:65,93
8	4007523	.	A	G	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||2109|CSMD1|protein_coding|CODING|ENST00000539096|3|1),INTRON(MODIFIER||||3387|CSMD1|protein_coding|CODING|ENST00000542608|3|1),INTRON(MODIFIER||||3388|CSMD1|protein_coding|CODING|ENST00000400186|3|1),INTRON(MODIFIER||||3564|CSMD1|protein_coding|CODING|ENST00000537824|3|1),INTRON(MODIFIER||||3565|CSMD1|protein_coding|CODING|ENST00000520002|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:3:0:0:36,39:0,0:0,0:0,0	82:0:0:0:76,76:0,0:6,6:0,0
8	4709223	rs80014364	G	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||2109|CSMD1|protein_coding|CODING|ENST00000539096|1|1),INTRON(MODIFIER||||3387|CSMD1|protein_coding|CODING|ENST00000542608|1|1),INTRON(MODIFIER||||3388|CSMD1|protein_coding|CODING|ENST00000400186|1|1),INTRON(MODIFIER||||3564|CSMD1|protein_coding|CODING|ENST00000537824|1|1),INTRON(MODIFIER||||3565|CSMD1|protein_coding|CODING|ENST00000520002|1|1);RSPOS=4709223;GMAF=0.0353;dbSNPBuildID=132;SSR=0;SAO=0;VP=050000080001070116000100;GENEINFO=CSMD1:64478;WGT=1;VC=SNV;INT;VLD;G5A;G5;GNO;KGPhase1;KGPROD;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:1:0:0:0,0:0,0:33,33:0,1	79:0:0:0:6,6:0,0:73,73:0,0
8	5889451	.	T	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||RP11-158A14.1|lincRNA|NON_CODING|ENST00000523090||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:0:0:0:0,0:0,0:0,0:29,29	86:3:0:0:0,0:5,5:0,1:78,80
8	6099942	rs13276987	A	G	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-124B13.1|lincRNA|NON_CODING|ENST00000519555|1|1);RSPOS=6099942;dbSNPBuildID=121;SSR=0;SAO=0;VP=050000000001000002000100;WGT=1;VC=SNV;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:0:0:0:38,38:0,0:0,0:0,0	69:0:0:0:64,64:0,0:5,5:0,0
8	6424218	.	T	C	.	PASS	NT=ref;QSS=23;QSS_NT=23;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||835|MCPH1|protein_coding|CODING|ENST00000344683|12|1),INTRON(MODIFIER|||||MCPH1|processed_transcript|CODING|ENST00000519221|4|1),INTRON(MODIFIER|||||MCPH1|processed_transcript|CODING|ENST00000521129|4|1),UPSTREAM(MODIFIER||||444|ANGPT2|protein_coding|CODING|ENST00000338312||1),UPSTREAM(MODIFIER||||459|ANGPT2|protein_coding|CODING|ENST00000523120||1),UPSTREAM(MODIFIER||||495|ANGPT2|protein_coding|CODING|ENST00000415216||1),UPSTREAM(MODIFIER||||496|ANGPT2|protein_coding|CODING|ENST00000325203||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	47:2:0:0:0,0:0,0:1,2:44,46	98:5:0:0:0,0:11,14:0,0:82,85
8	6952345	rs199843074	C	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=6952345;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:0:0:0:0,0:29,29:0,0:0,0	95:0:0:0:0,0:89,90:6,6:0,0
8	7460350	.	C	T	.	PASS	NT=ref;QSS=30;QSS_NT=30;SGT=CC->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=DOWNSTREAM(MODIFIER|||||RP11-1118M6.2|processed_pseudogene|NON_CODING|ENST00000533883||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	76:1:0:0:0,0:75,77:0,0:0,0	213:9:0:0:0,0:190,205:1,2:13,13
8	7996970	.	C	A	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-556O5.5|antisense|NON_CODING|ENST00000519726|6|1),UPSTREAM(MODIFIER|||||AC068020.1|miRNA|NON_CODING|ENST00000408100||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:0:0:0:0,0:38,40:1,1:0,0	70:3:0:0:6,6:61,72:0,1:0,0
8	8671040	.	C	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1052|MFHAS1|protein_coding|CODING|ENST00000276282|1|1),INTRON(MODIFIER|||||MFHAS1|processed_transcript|CODING|ENST00000520091|1|1),INTRON(MODIFIER|||||MFHAS1|processed_transcript|CODING|ENST00000520715|1|1),INTRON(MODIFIER|||||MFHAS1|processed_transcript|CODING|ENST00000521881|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:1:0:0:0,0:33,34:0,0:0,0	83:0:0:0:4,4:79,79:0,0:0,0
8	10314662	.	C	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	28:0:0:0:0,0:28,28:0,0:0,0	70:0:0:0:0,0:65,65:0,0:5,5
8	10336932	.	C	T	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||PRSS51|antisense|NON_CODING|ENST00000521149||1),DOWNSTREAM(MODIFIER|||||PRSS51|antisense|NON_CODING|ENST00000523024||1),DOWNSTREAM(MODIFIER|||||U6|snRNA|NON_CODING|ENST00000384399||1),INTRON(MODIFIER|||||RP11-981G7.2|lincRNA|NON_CODING|ENST00000517732|2|1),INTRON(MODIFIER|||||RP11-981G7.2|lincRNA|NON_CODING|ENST00000518098|1|1),INTRON(MODIFIER|||||RP11-981G7.2|lincRNA|NON_CODING|ENST00000524047|3|1),UPSTREAM(MODIFIER|||||RP11-981G7.3|lincRNA|NON_CODING|ENST00000520494||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	41:0:0:0:0,0:41,41:0,0:0,0	84:1:0:0:0,0:77,78:0,0:6,6
8	10787362	.	C	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||362|XKR6|protein_coding|CODING|ENST00000304437|1|1),INTRON(MODIFIER||||641|XKR6|protein_coding|CODING|ENST00000416569|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:1:0:0:0,0:31,32:0,0:0,0	79:0:0:0:0,0:73,73:0,0:6,6
8	11453374	.	A	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	27:0:0:0:27,27:0,0:0,0:0,0	71:2:0:0:64,65:5,6:0,0:0,0
8	12046803	.	A	G	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||FAM86B1|retained_intron|CODING|ENST00000533493||1),INTRON(MODIFIER||||129|FAM86B1|protein_coding|CODING|ENST00000321602|1|1),INTRON(MODIFIER||||153|FAM86B1|protein_coding|CODING|ENST00000340537|3|1),INTRON(MODIFIER||||153|FAM86B1|protein_coding|CODING|ENST00000534520|3|1),INTRON(MODIFIER||||159|FAM86B1|protein_coding|CODING|ENST00000533513|3|1),INTRON(MODIFIER||||296|FAM86B1|protein_coding|CODING|ENST00000448228|3|1),INTRON(MODIFIER||||297|FAM86B1|protein_coding|CODING|ENST00000526708|3|1),INTRON(MODIFIER||||330|FAM86B1|protein_coding|CODING|ENST00000431227|3|1),INTRON(MODIFIER||||97|FAM86B1|protein_coding|CODING|ENST00000524571|2|1),INTRON(MODIFIER|||||FAM86B1|nonsense_mediated_decay|CODING|ENST00000524893|2|1),INTRON(MODIFIER|||||FAM86B1|nonsense_mediated_decay|CODING|ENST00000525917|3|1),INTRON(MODIFIER|||||FAM86B1|nonsense_mediated_decay|CODING|ENST00000527300|2|1),INTRON(MODIFIER|||||FAM86B1|nonsense_mediated_decay|CODING|ENST00000529617|3|1),INTRON(MODIFIER|||||FAM86B1|nonsense_mediated_decay|CODING|ENST00000530289|4|1),INTRON(MODIFIER|||||FAM86B1|nonsense_mediated_decay|CODING|ENST00000530385|1|1),INTRON(MODIFIER|||||FAM86B1|nonsense_mediated_decay|CODING|ENST00000533852|3|1),INTRON(MODIFIER|||||FAM86B1|nonsense_mediated_decay|CODING|ENST00000534095|3|1),INTRON(MODIFIER|||||FAM86B1|processed_transcript|CODING|ENST00000524484|1|1),INTRON(MODIFIER|||||FAM86B1|processed_transcript|CODING|ENST00000529146|2|1),INTRON(MODIFIER|||||FAM86B1|processed_transcript|CODING|ENST00000532750|4|1),INTRON(MODIFIER|||||FAM86B1|retained_intron|CODING|ENST00000525822|2|1),INTRON(MODIFIER|||||FAM86B1|retained_intron|CODING|ENST00000527437|1|1),INTRON(MODIFIER|||||FAM86B1|retained_intron|CODING|ENST00000527721|3|1),INTRON(MODIFIER|||||FAM86B1|retained_intron|CODING|ENST00000530066|3|1),INTRON(MODIFIER|||||FAM86B1|retained_intron|CODING|ENST00000531343|1|1),INTRON(MODIFIER|||||FAM86B1|retained_intron|CODING|ENST00000531833|3|1),INTRON(MODIFIER|||||FAM86B1|retained_intron|CODING|ENST00000533042|3|1),INTRON(MODIFIER|||||FAM86B1|retained_intron|CODING|ENST00000534187|3|1),INTRON(MODIFIER|||||FAM86B1|retained_intron|CODING|ENST00000534732|2|1),UPSTREAM(MODIFIER|||||FAM86B1|retained_intron|CODING|ENST00000530299||1),UPSTREAM(MODIFIER|||||FAM86B1|retained_intron|CODING|ENST00000530508||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:0:0:0:32,38:0,0:0,0:0,0	72:0:0:0:64,74:0,0:8,8:0,0
8	12052627	.	A	G	.	PASS	NT=ref;QSS=27;QSS_NT=27;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=EXON(MODIFIER|||||AC145124.2|antisense|NON_CODING|ENST00000528514|1|1),UPSTREAM(MODIFIER||||129|FAM86B1|protein_coding|CODING|ENST00000321602||1),UPSTREAM(MODIFIER||||153|FAM86B1|protein_coding|CODING|ENST00000340537||1),UPSTREAM(MODIFIER||||153|FAM86B1|protein_coding|CODING|ENST00000534520||1),UPSTREAM(MODIFIER||||159|FAM86B1|protein_coding|CODING|ENST00000533513||1),UPSTREAM(MODIFIER||||296|FAM86B1|protein_coding|CODING|ENST00000448228||1),UPSTREAM(MODIFIER||||297|FAM86B1|protein_coding|CODING|ENST00000526708||1),UPSTREAM(MODIFIER||||330|FAM86B1|protein_coding|CODING|ENST00000431227||1),UPSTREAM(MODIFIER||||97|FAM86B1|protein_coding|CODING|ENST00000524571||1),UPSTREAM(MODIFIER|||||FAM86B1|nonsense_mediated_decay|CODING|ENST00000524893||1),UPSTREAM(MODIFIER|||||FAM86B1|nonsense_mediated_decay|CODING|ENST00000525917||1),UPSTREAM(MODIFIER|||||FAM86B1|nonsense_mediated_decay|CODING|ENST00000527300||1),UPSTREAM(MODIFIER|||||FAM86B1|nonsense_mediated_decay|CODING|ENST00000529617||1),UPSTREAM(MODIFIER|||||FAM86B1|nonsense_mediated_decay|CODING|ENST00000530289||1),UPSTREAM(MODIFIER|||||FAM86B1|nonsense_mediated_decay|CODING|ENST00000530385||1),UPSTREAM(MODIFIER|||||FAM86B1|nonsense_mediated_decay|CODING|ENST00000533852||1),UPSTREAM(MODIFIER|||||FAM86B1|nonsense_mediated_decay|CODING|ENST00000534095||1),UPSTREAM(MODIFIER|||||FAM86B1|processed_transcript|CODING|ENST00000524484||1),UPSTREAM(MODIFIER|||||FAM86B1|processed_transcript|CODING|ENST00000529146||1),UPSTREAM(MODIFIER|||||FAM86B1|processed_transcript|CODING|ENST00000532750||1),UPSTREAM(MODIFIER|||||FAM86B1|retained_intron|CODING|ENST00000525822||1),UPSTREAM(MODIFIER|||||FAM86B1|retained_intron|CODING|ENST00000527437||1),UPSTREAM(MODIFIER|||||FAM86B1|retained_intron|CODING|ENST00000527721||1),UPSTREAM(MODIFIER|||||FAM86B1|retained_intron|CODING|ENST00000530066||1),UPSTREAM(MODIFIER|||||FAM86B1|retained_intron|CODING|ENST00000531833||1),UPSTREAM(MODIFIER|||||FAM86B1|retained_intron|CODING|ENST00000533042||1),UPSTREAM(MODIFIER|||||FAM86B1|retained_intron|CODING|ENST00000533493||1),UPSTREAM(MODIFIER|||||FAM86B1|retained_intron|CODING|ENST00000534187||1),UPSTREAM(MODIFIER|||||FAM86B1|retained_intron|CODING|ENST00000534732||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	65:0:0:0:65,69:0,0:0,0:0,0	183:0:0:0:174,182:0,0:9,10:0,0
8	12365981	rs201604829	A	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||149|AC130352.1|protein_coding|CODING|ENST00000357132|5|1),INTRON(MODIFIER|||||RP11-351I21.10|unprocessed_pseudogene|NON_CODING|ENST00000529817|1|1);RSPOS=12365981;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000080005000002000100;WGT=1;VC=SNV;INT;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	16:0:0:0:16,16:0,0:0,0:0,0	41:0:0:0:33,33:0,0:8,8:0,0
8	13101865	.	G	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1125|DLC1|protein_coding|CODING|ENST00000512044|1|1),INTRON(MODIFIER||||1528|DLC1|protein_coding|CODING|ENST00000276297|5|1),INTRON(MODIFIER||||47|DLC1|protein_coding|CODING|ENST00000503161|1|1),INTRON(MODIFIER||||498|DLC1|protein_coding|CODING|ENST00000316609|5|1),INTRON(MODIFIER|||||DLC1|processed_transcript|CODING|ENST00000506171|1|1),INTRON(MODIFIER|||||DLC1|processed_transcript|CODING|ENST00000509922|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:0:0:0:0,0:0,0:30,30:0,0	81:2:0:0:0,0:10,10:69,70:0,1
8	14340749	.	G	A	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||U6|snRNA|NON_CODING|ENST00000516226||1),INTRON(MODIFIER||||265|SGCZ|protein_coding|CODING|ENST00000421524|1|1),INTRON(MODIFIER||||312|SGCZ|protein_coding|CODING|ENST00000382080|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:0:0:0:0,0:0,0:33,34:0,0	67:0:0:0:6,6:0,0:61,62:0,0
8	14449687	.	T	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||312|SGCZ|protein_coding|CODING|ENST00000382080|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:0:0:0:0,0:0,0:0,0:30,30	68:0:0:0:0,0:5,5:0,0:63,63
8	14487499	.	G	C	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||312|SGCZ|protein_coding|CODING|ENST00000382080|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:0:0:0:0,0:0,0:34,34:0,0	73:3:0:0:0,0:6,6:64,67:0,0
8	14563528	.	T	C	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||312|SGCZ|protein_coding|CODING|ENST00000382080|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:1:0:0:0,0:0,0:0,0:37,38	77:0:0:0:0,0:7,7:0,0:70,70
8	14658897	.	T	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||312|SGCZ|protein_coding|CODING|ENST00000382080|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:0:0:0:0,0:0,0:0,0:29,29	81:0:0:0:0,0:8,9:0,0:73,73
8	15732444	rs200830481	G	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=15732444;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:1:1:0:0,0:0,0:31,32:0,0	73:2:3:0:7,10:0,0:64,66:0,0
8	16329229	.	A	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||57|MSR1|protein_coding|CODING|ENST00000518026|2|1),INTRON(MODIFIER|||||MSR1|processed_transcript|CODING|ENST00000518343|4|1),INTRON(MODIFIER|||||MSR1|processed_transcript|CODING|ENST00000520846|1|1),INTRON(MODIFIER|||||MSR1|processed_transcript|CODING|ENST00000521876|1|1),INTRON(MODIFIER|||||MSR1|processed_transcript|CODING|ENST00000522130|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:0:0:0:31,31:0,0:0,0:0,0	70:1:0:0:65,65:0,0:0,0:4,5
8	18041558	.	G	T	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||290|NAT1|protein_coding|CODING|ENST00000535084|1|1),INTRON(MODIFIER|||||NAT1|processed_transcript|CODING|ENST00000517441|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:0:0:0:0,0:0,0:38,38:0,0	72:2:0:0:0,0:0,0:65,67:5,5
8	18966919	.	T	C	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-1080G15.1|lincRNA|NON_CODING|ENST00000517949|3|1),INTRON(MODIFIER|||||RP11-1080G15.1|lincRNA|NON_CODING|ENST00000520920|4|1),INTRON(MODIFIER|||||RP11-1080G15.2|lincRNA|NON_CODING|ENST00000518324|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:0:0:0:0,0:0,0:0,0:36,36	79:1:0:0:0,0:6,7:0,0:72,72
8	19194084	.	G	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||188|SH2D4A|protein_coding|CODING|ENST00000523736|3|1),INTRON(MODIFIER||||409|SH2D4A|protein_coding|CODING|ENST00000518040|3|1),INTRON(MODIFIER||||454|SH2D4A|protein_coding|CODING|ENST00000265807|4|1),INTRON(MODIFIER||||454|SH2D4A|protein_coding|CODING|ENST00000519207|4|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	45:0:0:0:1,1:1,1:43,43:0,0	88:0:0:0:6,6:0,0:82,84:0,0
8	19524804	.	G	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||103|CSGALNACT1|protein_coding|CODING|ENST00000523262|1|1),INTRON(MODIFIER||||13|CSGALNACT1|protein_coding|CODING|ENST00000524213|1|1),INTRON(MODIFIER||||532|CSGALNACT1|protein_coding|CODING|ENST00000311540|1|1),INTRON(MODIFIER||||532|CSGALNACT1|protein_coding|CODING|ENST00000332246|1|1),INTRON(MODIFIER||||532|CSGALNACT1|protein_coding|CODING|ENST00000544602|1|1),INTRON(MODIFIER||||95|CSGALNACT1|protein_coding|CODING|ENST00000517494|1|1),INTRON(MODIFIER|||||CSGALNACT1|nonsense_mediated_decay|CODING|ENST00000397998|1|1),INTRON(MODIFIER|||||CSGALNACT1|processed_transcript|CODING|ENST00000522573|2|1),INTRON(MODIFIER|||||CSGALNACT1|processed_transcript|CODING|ENST00000523227|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	28:1:0:0:0,0:0,0:27,29:0,0	78:2:0:0:0,0:8,8:68,70:0,0
8	19692885	.	G	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||INTS10|retained_intron|CODING|ENST00000523143||1),INTRON(MODIFIER||||710|INTS10|protein_coding|CODING|ENST00000397977|12|1),INTRON(MODIFIER|||||INTS10|retained_intron|CODING|ENST00000519493|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:0:0:0:0,0:0,0:33,33:0,0	76:2:0:0:0,0:0,0:65,68:9,9
8	21954995	.	G	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||FAM160B2|retained_intron|CODING|ENST00000488968||1),DOWNSTREAM(MODIFIER|||||FAM160B2|retained_intron|CODING|ENST00000498344||1),INTRON(MODIFIER||||743|FAM160B2|protein_coding|CODING|ENST00000289921|3|1),INTRON(MODIFIER|||||FAM160B2|nonsense_mediated_decay|CODING|ENST00000427751|4|1),INTRON(MODIFIER|||||FAM160B2|nonsense_mediated_decay|CODING|ENST00000450006|3|1),UPSTREAM(MODIFIER|||||FAM160B2|retained_intron|CODING|ENST00000462914||1),UPSTREAM(MODIFIER|||||FAM160B2|retained_intron|CODING|ENST00000464226||1),UPSTREAM(MODIFIER|||||FAM160B2|retained_intron|CODING|ENST00000474579||1),UPSTREAM(MODIFIER|||||FAM160B2|retained_intron|CODING|ENST00000477614||1),UPSTREAM(MODIFIER|||||FAM160B2|retained_intron|CODING|ENST00000491733||1),UPSTREAM(MODIFIER|||||FAM160B2|retained_intron|CODING|ENST00000496599||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:2:0:0:0,0:0,0:31,33:0,0	96:1:0:0:5,5:0,0:90,92:0,0
8	22403820	.	A	G	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||SORBS3|processed_transcript|CODING|ENST00000522037|1|1),INTRON(MODIFIER|||||SORBS3|processed_transcript|CODING|ENST00000523941|1|1),UPSTREAM(MODIFIER|||||RP11-582J16.4|antisense|NON_CODING|ENST00000514980||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:1:0:0:35,36:0,0:0,0:0,0	65:1:0:0:59,59:1,2:4,4:0,0
8	27157845	.	C	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||266|TRIM35|protein_coding|CODING|ENST00000521253|1|1),INTRON(MODIFIER||||493|TRIM35|protein_coding|CODING|ENST00000305364|1|1),INTRON(MODIFIER|||||TRIM35|retained_intron|CODING|ENST00000519219|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:0:0:0:0,0:30,30:0,0:0,0	66:2:0:0:5,5:59,61:0,0:0,0
8	27237916	.	G	A	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1009|PTK2B|protein_coding|CODING|ENST00000346049|1|1),INTRON(MODIFIER||||1009|PTK2B|protein_coding|CODING|ENST00000397501|6|1),INTRON(MODIFIER||||1009|PTK2B|protein_coding|CODING|ENST00000544172|5|1),INTRON(MODIFIER||||102|PTK2B|protein_coding|CODING|ENST00000521164|2|1),INTRON(MODIFIER||||183|PTK2B|protein_coding|CODING|ENST00000522517|1|1),INTRON(MODIFIER||||67|PTK2B|protein_coding|CODING|ENST00000522338|3|1),INTRON(MODIFIER||||967|PTK2B|protein_coding|CODING|ENST00000338238|6|1),INTRON(MODIFIER||||967|PTK2B|protein_coding|CODING|ENST00000420218|1|1),UPSTREAM(MODIFIER||||212|PTK2B|protein_coding|CODING|ENST00000412793||1),UPSTREAM(MODIFIER|||||PTK2B|processed_transcript|CODING|ENST00000496920||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:0:0:0:0,0:0,0:36,37:1,1	96:0:0:0:6,6:0,0:90,90:0,0
8	29375627	.	C	G	.	PASS	NT=ref;QSS=23;QSS_NT=23;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	48:2:0:0:1,1:45,47:0,0:0,0	81:3:0:0:1,3:69,70:8,8:0,0
8	29884881	.	G	A	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||MAP2K1P1|processed_pseudogene|NON_CODING|ENST00000519737||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:0:0:0:0,0:0,0:37,37:0,0	88:1:0:0:4,4:0,1:83,83:0,0
8	31807328	.	T	C	.	PASS	NT=ref;QSS=23;QSS_NT=23;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||422|NRG1|protein_coding|CODING|ENST00000520407|1|1),INTRON(MODIFIER||||480|NRG1|protein_coding|CODING|ENST00000518104|1|1),INTRON(MODIFIER||||590|NRG1|protein_coding|CODING|ENST00000519301|1|1),INTRON(MODIFIER||||713|NRG1|protein_coding|CODING|ENST00000523534|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	44:0:0:0:0,0:0,0:0,0:44,44	67:0:0:0:0,0:8,8:0,0:59,59
8	33476404	.	C	T	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-317N12.1|lincRNA|NON_CODING|ENST00000523063|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:2:0:0:0,0:33,35:0,0:0,0	75:2:0:0:0,0:63,65:0,0:10,10
8	34732162	.	A	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||RP11-734J24.1|processed_pseudogene|NON_CODING|ENST00000477341||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	25:0:1:0:25,25:0,0:0,0:0,0	56:1:0:0:49,50:0,0:0,0:6,6
8	35012907	.	T	A	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:0:0:0:0,0:0,0:0,0:29,29	69:2:0:0:9,10:1,1:0,0:57,58
8	35057610	.	G	C	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:0:0:0:0,0:0,0:34,34:0,0	87:0:0:0:1,1:6,6:80,81:0,0
8	35853240	.	C	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:0:0:0:0,0:29,29:0,0:0,0	81:0:0:0:0,0:73,73:8,8:0,0
8	36011605	.	T	A	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:0:0:0:0,0:0,0:0,0:32,33	83:0:0:0:13,13:0,0:0,0:70,70
8	36184251	.	C	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:0:0:0:0,0:30,30:0,0:0,0	93:0:0:0:0,0:81,81:0,0:12,12
8	36305958	.	C	A	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:0:0:0:0,0:33,33:0,0:0,0	79:2:0:0:7,7:70,72:0,0:0,0
8	36395063	.	T	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-962G15.1|processed_transcript|NON_CODING|ENST00000524132|4|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:0:0:0:0,0:0,0:0,0:29,29	74:1:0:0:0,0:0,0:6,7:67,67
8	36685276	.	G	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1149|KCNU1|protein_coding|CODING|ENST00000399881|10|1),INTRON(MODIFIER|||||KCNU1|nonsense_mediated_decay|CODING|ENST00000522372|10|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:0:0:0:0,0:0,0:31,31:0,0	90:0:0:0:0,0:4,4:84,84:2,2
8	36726130	.	C	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1149|KCNU1|protein_coding|CODING|ENST00000399881|19|1),INTRON(MODIFIER|||||KCNU1|nonsense_mediated_decay|CODING|ENST00000522372|19|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:0:0:0:0,0:30,30:0,0:0,0	70:0:0:0:0,0:64,64:0,0:6,6
8	36990568	.	T	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:1:0:0:0,0:0,0:0,0:30,31	67:2:0:0:8,8:0,0:0,1:57,57
8	37094327	.	C	G	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:1:0:0:0,0:38,38:0,0:0,1	77:0:0:0:0,0:73,74:4,4:0,0
8	37154975	.	C	G	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:0:0:0:0,0:36,37:0,0:0,0	79:0:0:0:0,0:70,72:9,9:0,0
8	38464661	.	C	T	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:0:0:0:0,0:35,35:0,0:0,0	66:0:0:0:0,0:60,61:0,0:6,6
8	40194429	.	G	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||CTA-392C11.1|lincRNA|NON_CODING|ENST00000521030|1|1),INTRON(MODIFIER|||||CTA-392C11.1|lincRNA|NON_CODING|ENST00000522486|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:0:0:0:0,0:0,0:29,29:0,0	81:0:0:0:5,5:1,1:75,75:0,0
8	40496716	rs182543411	T	G	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||153|ZMAT4|protein_coding|CODING|ENST00000315769|4|1),INTRON(MODIFIER||||210|ZMAT4|protein_coding|CODING|ENST00000519406|5|1),INTRON(MODIFIER||||229|ZMAT4|protein_coding|CODING|ENST00000297737|5|1);RSPOS=40496716;GMAF=0.0005;dbSNPBuildID=135;SSR=0;SAO=0;VP=050000080005000014000100;GENEINFO=ZMAT4:79698;WGT=1;VC=SNV;INT;ASP;KGPhase1;KGPROD	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	43:1:0:0:0,0:0,0:0,0:42,43	80:0:0:0:0,0:0,0:4,4:76,76
8	41042616	rs111406071	G	T	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=41042616;dbSNPBuildID=132;SSR=0;SAO=0;VP=050100000005040102000100;WGT=1;VC=SNV;SLO;ASP;VLD;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	28:3:0:0:0,0:0,0:25,30:0,0	68:3:0:0:1,1:1,1:52,60:11,13
8	42692978	.	T	A	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=TT->AT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=DOWNSTREAM(MODIFIER||||117|THAP1|protein_coding|CODING|ENST00000529779||1),DOWNSTREAM(MODIFIER|||||THAP1|processed_transcript|CODING|ENST00000532093||1),UTR_3_PRIME(MODIFIER||||213|THAP1|protein_coding|CODING|ENST00000254250|3|1),UTR_3_PRIME(MODIFIER||||53|THAP1|protein_coding|CODING|ENST00000345117|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	46:1:0:0:0,0:0,0:0,0:45,46	80:1:0:0:5,5:0,0:0,0:74,77
8	42795213	.	C	T	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=CC->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER||||718|HOOK3|protein_coding|CODING|ENST00000307602|4|1),INTRON(MODIFIER|||||HOOK3|retained_intron|CODING|ENST00000527306|4|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	43:0:0:0:0,0:43,43:0,0:0,0	70:2:0:0:0,0:63,66:0,0:5,5
8	43094138	.	A	T	.	PASS	NT=ref;QSS=29;QSS_NT=29;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	89:31:0:0:58,125:0,1:0,0:0,0	186:43:0:0:130,244:2,9:0,2:11,16
8	43179141	.	C	T	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||POTEA|processed_transcript|NON_CODING|ENST00000522175|8|1),INTRON(MODIFIER|||||POTEA|transcribed_unprocessed_pseudogene|NON_CODING|ENST00000519951|9|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:0:0:0:0,0:36,36:0,0:0,0	66:1:0:0:0,1:60,60:0,0:5,7
8	43179184	.	G	T	.	PASS	NT=ref;QSS=24;QSS_NT=24;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||POTEA|processed_transcript|NON_CODING|ENST00000522175|8|1),INTRON(MODIFIER|||||POTEA|transcribed_unprocessed_pseudogene|NON_CODING|ENST00000519951|9|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	47:0:0:0:0,0:0,0:47,47:0,0	70:1:0:0:0,0:0,0:63,64:6,8
8	43179187	.	G	T	.	PASS	NT=ref;QSS=23;QSS_NT=23;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||POTEA|processed_transcript|NON_CODING|ENST00000522175|8|1),INTRON(MODIFIER|||||POTEA|transcribed_unprocessed_pseudogene|NON_CODING|ENST00000519951|9|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	46:0:0:0:0,0:0,0:46,46:0,0	71:0:0:0:0,0:0,0:65,65:6,8
8	43400546	.	A	G	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=AA->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=DOWNSTREAM(MODIFIER|||||CYP4F44P|unprocessed_pseudogene|NON_CODING|ENST00000520423||1),DOWNSTREAM(MODIFIER|||||RP11-359P18.6|unprocessed_pseudogene|NON_CODING|ENST00000519172||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	41:2:0:0:38,39:1,2:0,0:0,0	85:3:0:0:75,78:2,2:5,5:0,0
8	43405593	.	C	G	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:0:0:0:0,0:35,35:0,0:0,0	93:1:0:0:0,0:87,89:5,5:0,0
8	43437168	.	T	G	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:2:0:0:0,0:0,2:0,0:34,68	100:8:1:0:0,0:0,2:6,10:86,160
8	43760801	.	G	C	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	44:11:0:0:0,1:0,1:33,60:0,0	74:18:0:0:0,3:5,5:51,87:0,0
8	43779049	rs145352225	C	G	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=43779049;dbSNPBuildID=134;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	46:0:0:0:0,0:45,57:0,2:1,1	85:1:0:0:0,0:80,105:4,19:0,1
8	43806230	.	A	T	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=AA->AT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	58:0:0:0:58,65:0,0:0,0:0,2	86:3:0:0:77,89:0,0:0,0:6,11
8	43807028	rs183725622	C	T	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=43807028;GMAF=0.1296;dbSNPBuildID=135;SSR=0;SAO=0;VP=050000000005000014000100;WGT=1;VC=SNV;ASP;KGPhase1;KGPROD	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	15:0:0:0:0,0:15,22:0,0:0,0	46:2:0:0:0,0:31,42:0,0:13,15
8	43830645	rs193209454	C	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=43830645;dbSNPBuildID=135;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	41:0:0:0:0,0:41,49:0,0:0,0	103:2:0:0:0,1:92,115:0,0:9,11
8	46851296	.	G	T	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:1:0:0:0,0:0,0:35,59:0,1	76:0:0:0:0,0:0,1:65,111:11,16
8	46851297	rs142122971	C	T	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=46851297;dbSNPBuildID=134;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:1:0:0:0,0:37,60:0,1:0,1	91:2:0:0:0,0:77,127:0,0:12,17
8	46885557	.	C	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:2:0:0:0,0:33,50:0,0:1,2	84:2:0:0:5,6:77,101:0,1:0,2
8	46898551	rs142594582	A	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=AA->AT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=46898551;dbSNPBuildID=134;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:0:0:0:30,30:0,0:0,0:0,1	90:5:0:0:79,79:0,1:0,0:6,14
8	46938045	.	C	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:1:0:0:0,0:29,30:0,0:0,0	76:3:0:0:0,0:69,72:0,0:4,5
8	46982660	.	T	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:0:0:0:0,0:0,0:0,0:31,31	69:1:0:0:0,0:5,5:0,0:63,68
8	47047194	.	A	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	27:0:0:0:27,27:0,0:0,0:0,0	82:0:0:0:76,76:0,0:6,6:0,0
8	47135658	.	T	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:0:0:0:0,0:0,0:0,0:30,31	66:1:0:0:0,0:0,0:4,5:61,61
8	47251047	.	C	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:1:0:0:0,0:32,33:0,0:0,0	69:0:0:0:0,0:62,62:0,0:7,7
8	47356534	.	C	G	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:0:0:0:0,0:38,39:0,0:0,0	77:1:0:0:0,0:70,71:6,6:0,0
8	47900605	.	T	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	47:0:0:0:0,0:1,1:0,0:46,46	92:0:0:0:1,1:7,8:0,0:84,85
8	50472282	.	T	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	28:0:0:0:0,0:0,0:0,0:28,28	106:1:0:0:0,0:6,6:1,1:98,99
8	50521652	.	T	C	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:0:0:0:0,0:0,0:0,0:35,35	73:0:0:0:0,0:4,4:0,0:69,69
8	50551172	.	C	G	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:0:0:0:0,0:29,30:0,0:0,0	66:0:0:0:0,0:57,57:9,9:0,0
8	50602760	.	T	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	28:0:0:0:0,0:0,0:0,0:28,28	79:2:0:0:0,0:0,0:5,5:72,73
8	50635278	.	C	G	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	41:0:0:0:0,0:41,41:0,0:0,0	88:1:0:0:0,0:83,84:4,4:0,0
8	51582492	rs140632301	G	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->CG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER||||480|SNTG1|protein_coding|CODING|ENST00000276467|13|1),INTRON(MODIFIER||||480|SNTG1|protein_coding|CODING|ENST00000517473|14|1),INTRON(MODIFIER||||517|SNTG1|protein_coding|CODING|ENST00000518864|16|1),INTRON(MODIFIER||||517|SNTG1|protein_coding|CODING|ENST00000522124|15|1),INTRON(MODIFIER|||||SNTG1|nonsense_mediated_decay|CODING|ENST00000520825|14|1);RSPOS=51582492;dbSNPBuildID=134;SSR=0;SAO=0;VP=050000080005000002000100;GENEINFO=SNTG1:54212;WGT=1;VC=SNV;INT;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	57:0:0:0:0,0:0,2:57,62:0,0	121:0:0:0:0,0:14,18:107,123:0,0
8	51954009	.	C	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:1:0:0:0,0:31,34:0,0:0,0	76:2:0:0:0,0:65,67:0,0:9,10
8	52740587	.	A	G	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||281|PCMTD1|protein_coding|CODING|ENST00000544451|3|1),INTRON(MODIFIER||||357|PCMTD1|protein_coding|CODING|ENST00000360540|6|1),INTRON(MODIFIER||||357|PCMTD1|protein_coding|CODING|ENST00000522514|5|1),INTRON(MODIFIER|||||PCMTD1|processed_transcript|CODING|ENST00000519559|5|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:1:0:0:32,33:0,0:0,0:0,0	71:1:0:0:65,66:0,0:5,5:0,0
8	53278759	.	G	C	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1047|ST18|protein_coding|CODING|ENST00000276480|2|1),INTRON(MODIFIER||||619|ST18|protein_coding|CODING|ENST00000517580|2|1),INTRON(MODIFIER|||||ST18|processed_transcript|CODING|ENST00000521549|2|1),INTRON(MODIFIER|||||ST18|retained_intron|CODING|ENST00000520279|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:0:0:0:0,0:0,0:39,39:0,0	80:1:0:0:0,0:4,4:75,76:0,0
8	53281235	.	C	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1047|ST18|protein_coding|CODING|ENST00000276480|2|1),INTRON(MODIFIER||||619|ST18|protein_coding|CODING|ENST00000517580|2|1),INTRON(MODIFIER|||||ST18|processed_transcript|CODING|ENST00000521549|2|1),INTRON(MODIFIER|||||ST18|retained_intron|CODING|ENST00000520279|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:0:0:0:0,0:36,36:0,0:0,0	85:0:0:0:4,4:81,81:0,0:0,0
8	53374331	.	C	T	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||ST18|retained_intron|CODING|ENST00000523652||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	42:2:0:0:0,1:40,42:0,0:0,0	82:0:0:0:0,0:76,77:0,0:6,6
8	53864962	.	G	A	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:1:0:0:0,0:0,0:37,38:0,0	70:1:0:0:5,6:0,0:64,65:0,0
8	54308748	.	C	T	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||RP11-1081M5.1|lincRNA|NON_CODING|ENST00000521558||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:0:0:0:0,0:37,37:0,0:0,0	78:3:0:0:0,0:68,71:0,0:7,7
8	55407150	rs113470061	T	C	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=55407150;dbSNPBuildID=132;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	23:2:0:0:0,0:0,0:0,0:21,23	42:2:0:0:0,0:8,9:0,0:32,34
8	56058052	.	C	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||650|XKR4|protein_coding|CODING|ENST00000327381|1|1),UPSTREAM(MODIFIER||||63|RP11-386G21.1|protein_coding|CODING|ENST00000522186||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:0:0:0:0,0:30,30:0,0:0,0	63:0:0:0:4,4:59,60:0,0:0,0
8	56125075	.	C	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||650|XKR4|protein_coding|CODING|ENST00000327381|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:0:0:0:0,0:32,32:0,0:0,0	83:0:0:0:0,0:76,77:0,0:7,7
8	57184558	.	A	G	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:2:0:0:30,33:1,1:0,0:0,0	61:4:0:0:51,55:0,1:6,7:0,0
8	57934678	.	T	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:5:0:0:0,0:0,1:0,0:27,36	96:11:0:0:1,1:11,14:2,3:71,83
8	62889114	.	G	C	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	41:0:0:0:0,0:0,0:41,42:0,0	79:0:0:0:0,0:5,5:74,74:0,0
8	63777607	.	C	T	.	PASS	NT=ref;QSS=27;QSS_NT=27;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||NKAIN3|processed_transcript|CODING|ENST00000523367||1),INTRON(MODIFIER||||197|NKAIN3|protein_coding|CODING|ENST00000328472|4|1),INTRON(MODIFIER||||197|NKAIN3|protein_coding|CODING|ENST00000523211|4|1),INTRON(MODIFIER|||||NKAIN3|processed_transcript|CODING|ENST00000519049|5|1),UPSTREAM(MODIFIER|||||RP11-442A17.2|processed_pseudogene|NON_CODING|ENST00000523408||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	46:0:0:0:0,0:46,46:0,0:0,0	68:1:0:0:0,0:57,58:0,0:10,11
8	63800185	.	G	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER||||197|NKAIN3|protein_coding|CODING|ENST00000328472|4|1),INTRON(MODIFIER||||197|NKAIN3|protein_coding|CODING|ENST00000523211|4|1),INTRON(MODIFIER|||||NKAIN3|processed_transcript|CODING|ENST00000519049|5|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:0:0:0:0,0:0,0:33,33:1,1	83:2:0:0:7,7:0,0:74,76:0,0
8	65997767	.	A	G	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:0:0:0:33,33:0,0:0,0:0,0	74:2:0:0:67,68:0,1:5,5:0,0
8	67629624	.	G	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||496|SGK3|protein_coding|CODING|ENST00000262211|1|1),INTRON(MODIFIER||||496|SGK3|protein_coding|CODING|ENST00000519289|3|1),INTRON(MODIFIER||||496|SGK3|protein_coding|CODING|ENST00000521198|1|1),INTRON(MODIFIER|||||SGK3|processed_transcript|CODING|ENST00000494528|1|1),INTRON(MODIFIER|||||SGK3|processed_transcript|CODING|ENST00000520044|2|1),INTRON(MODIFIER|||||SGK3|processed_transcript|CODING|ENST00000523401|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:1:0:0:0,0:0,0:32,33:0,0	65:3:0:0:0,0:5,6:57,60:0,0
8	67629645	.	T	G	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||496|SGK3|protein_coding|CODING|ENST00000262211|1|1),INTRON(MODIFIER||||496|SGK3|protein_coding|CODING|ENST00000519289|3|1),INTRON(MODIFIER||||496|SGK3|protein_coding|CODING|ENST00000521198|1|1),INTRON(MODIFIER|||||SGK3|processed_transcript|CODING|ENST00000494528|1|1),INTRON(MODIFIER|||||SGK3|processed_transcript|CODING|ENST00000520044|2|1),INTRON(MODIFIER|||||SGK3|processed_transcript|CODING|ENST00000523401|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:1:0:0:0,0:0,0:0,0:39,40	57:1:0:0:0,0:0,0:7,7:49,51
8	67747259	.	C	G	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||107|SGK3|protein_coding|CODING|ENST00000521960||1),INTRON(MODIFIER||||125|SGK3|protein_coding|CODING|ENST00000519396|4|1),INTRON(MODIFIER||||148|SGK3|protein_coding|CODING|ENST00000522629|6|1),INTRON(MODIFIER||||165|SGK3|protein_coding|CODING|ENST00000521152|3|1),INTRON(MODIFIER||||464|SGK3|protein_coding|CODING|ENST00000520976|8|1),INTRON(MODIFIER||||496|SGK3|protein_coding|CODING|ENST00000262211|8|1),INTRON(MODIFIER||||496|SGK3|protein_coding|CODING|ENST00000345714|7|1),INTRON(MODIFIER||||496|SGK3|protein_coding|CODING|ENST00000396596|8|1),INTRON(MODIFIER||||496|SGK3|protein_coding|CODING|ENST00000519289|10|1),INTRON(MODIFIER||||496|SGK3|protein_coding|CODING|ENST00000521198|8|1),INTRON(MODIFIER||||496|SGK3|protein_coding|CODING|ENST00000522398|9|1),UPSTREAM(MODIFIER|||||SGK3|processed_transcript|CODING|ENST00000521435||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:0:0:0:1,1:38,38:0,0:0,0	81:1:0:0:0,0:74,76:6,7:0,0
8	68735600	.	A	T	.	PASS	NT=ref;QSS=24;QSS_NT=24;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	49:1:0:0:48,49:0,0:0,0:0,0	84:0:0:0:76,76:0,0:0,0:8,8
8	69161085	rs184725887	C	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=69161085;GMAF=0.0005;dbSNPBuildID=135;SSR=0;SAO=0;VP=050000000005000014000100;WGT=1;VC=SNV;ASP;KGPhase1;KGPROD	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:1:0:0:0,0:32,33:0,0:0,0	63:0:0:0:0,0:58,58:0,0:5,5
8	69300074	.	C	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||129|C8orf34|protein_coding|CODING|ENST00000523686|1|1),INTRON(MODIFIER||||287|C8orf34|protein_coding|CODING|ENST00000348340|1|1),INTRON(MODIFIER||||452|C8orf34|protein_coding|CODING|ENST00000539993|1|1),INTRON(MODIFIER||||538|C8orf34|protein_coding|CODING|ENST00000518698|1|1),INTRON(MODIFIER|||||C8orf34|processed_transcript|CODING|ENST00000349492|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:1:0:0:0,0:30,31:0,0:0,0	76:0:0:0:0,0:68,69:8,8:0,0
8	69823791	.	G	A	.	PASS	NT=ref;QSS=28;QSS_NT=28;SGT=GG->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=DOWNSTREAM(MODIFIER|||||RP11-600K15.1|processed_transcript|NON_CODING|ENST00000518540||1),DOWNSTREAM(MODIFIER|||||RP11-600K15.1|processed_transcript|NON_CODING|ENST00000519062||1),DOWNSTREAM(MODIFIER|||||RP11-600K15.1|processed_transcript|NON_CODING|ENST00000524286||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:0:0:0:0,0:0,0:30,30:0,0	77:0:0:0:15,15:1,1:60,61:1,1
8	70878475	.	T	C	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:1:0:0:0,0:0,0:0,0:39,40	89:0:0:0:0,0:6,6:0,0:83,83
8	70993589	.	A	G	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||U1|snRNA|NON_CODING|ENST00000391171||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:0:0:0:32,32:0,0:0,0:0,0	93:1:0:0:87,88:0,0:5,5:0,0
8	71750463	.	T	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:0:0:0:0,0:0,0:0,0:34,34	90:0:0:0:0,0:4,4:0,0:86,86
8	72177056	.	G	T	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||557|EYA1|protein_coding|CODING|ENST00000419131|10|1),INTRON(MODIFIER||||558|EYA1|protein_coding|CODING|ENST00000388741|10|1),INTRON(MODIFIER||||559|EYA1|protein_coding|CODING|ENST00000388740|9|1),INTRON(MODIFIER||||586|EYA1|protein_coding|CODING|ENST00000303824|11|1),INTRON(MODIFIER||||591|EYA1|protein_coding|CODING|ENST00000388743|10|1),INTRON(MODIFIER||||592|EYA1|protein_coding|CODING|ENST00000340726|11|1),INTRON(MODIFIER||||592|EYA1|protein_coding|CODING|ENST00000388742|10|1),INTRON(MODIFIER|||||EYA1|nonsense_mediated_decay|CODING|ENST00000465115|11|1),INTRON(MODIFIER|||||EYA1|nonsense_mediated_decay|CODING|ENST00000493349|3|1),INTRON(MODIFIER|||||EYA1|retained_intron|CODING|ENST00000496494|9|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:0:0:0:0,0:0,0:36,36:0,0	70:1:0:0:0,0:0,0:62,65:7,7
8	72525492	.	A	G	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:0:0:0:35,35:0,0:0,0:0,0	70:0:0:0:60,60:0,0:10,10:0,0
8	73475349	.	A	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||911|KCNB2|protein_coding|CODING|ENST00000523207|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:1:0:0:31,31:0,1:0,0:0,0	68:1:0:0:63,64:0,0:0,0:4,4
8	74121999	.	T	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->GT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:1:0:0:0,0:1,1:1,2:29,29	59:3:0:0:0,0:1,1:13,15:42,43
8	74171782	.	C	G	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:1:0:0:0,0:36,37:0,0:0,0	90:0:0:0:0,0:85,86:5,5:0,0
8	75031166	rs56380404	C	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=75031166;GMAF=0.0847;dbSNPBuildID=129;SSR=0;SAO=0;VP=05000000000100011e000100;WGT=1;VC=SNV;GNO;KGPhase1;KGPilot123;KGPROD;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:0:0:0:0,0:29,29:0,0:0,0	82:3:0:0:0,0:72,75:6,6:1,1
8	75754618	.	C	T	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||RP11-758M4.4|processed_transcript|NON_CODING|ENST00000522914||1),INTRON(MODIFIER||||258|PI15|protein_coding|CODING|ENST00000260113|2|1),INTRON(MODIFIER||||258|PI15|protein_coding|CODING|ENST00000523773|1|1),INTRON(MODIFIER|||||RP11-758M4.4|processed_transcript|NON_CODING|ENST00000518128|2|1),INTRON(MODIFIER|||||RP11-758M4.4|processed_transcript|NON_CODING|ENST00000523860|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:0:0:0:0,0:38,38:0,0:0,0	69:0:0:0:0,0:63,63:0,0:6,6
8	77127311	.	G	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	27:0:0:0:0,0:0,0:27,27:0,0	52:0:0:0:7,7:0,0:45,45:0,0
8	78278842	.	C	T	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:0:0:0:0,0:40,40:0,0:0,0	73:2:0:0:0,0:66,68:0,0:5,6
8	78464783	.	C	G	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-38H17.1|lincRNA|NON_CODING|ENST00000518706|7|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:0:0:0:0,0:34,34:0,0:0,0	88:0:0:0:0,0:82,82:6,6:0,0
8	79070356	.	A	G	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||RP11-91P17.1|lincRNA|NON_CODING|ENST00000520603||1),DOWNSTREAM(MODIFIER|||||RP11-91P17.1|lincRNA|NON_CODING|ENST00000521879||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:0:0:0:36,36:0,0:0,0:0,0	81:0:0:0:71,71:0,0:10,10:0,0
8	79848970	.	G	A	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:3:0:0:0,0:0,1:35,36:0,1	75:0:0:0:8,8:0,0:67,67:0,0
8	80034616	.	T	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:1:0:0:0,0:0,0:1,1:28,29	72:1:0:0:6,6:0,0:0,0:65,66
8	80514148	.	T	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:0:0:0:0,0:0,0:0,0:29,29	83:0:0:0:5,5:0,0:0,0:78,78
8	81575309	.	A	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||ZNF704|processed_transcript|CODING|ENST00000520336||1),DOWNSTREAM(MODIFIER|||||ZNF704|processed_transcript|CODING|ENST00000522040||1),INTRON(MODIFIER||||412|ZNF704|protein_coding|CODING|ENST00000327835|6|1),UPSTREAM(MODIFIER|||||ZNF704|processed_transcript|CODING|ENST00000517986||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:1:0:0:29,30:0,0:0,0:0,0	80:0:0:0:74,74:0,0:0,0:6,6
8	81754487	.	C	A	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||188|ZNF704|protein_coding|CODING|ENST00000519936|1|1),INTRON(MODIFIER||||412|ZNF704|protein_coding|CODING|ENST00000327835|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:1:0:0:0,0:38,39:0,0:0,0	79:0:0:0:9,9:70,70:0,0:0,0
8	82204074	.	C	A	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:0:0:0:0,0:34,34:0,0:0,0	82:0:0:0:9,9:73,73:0,0:0,0
8	84651063	.	T	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:1:0:0:0,0:0,0:1,1:32,33	87:1:0:0:0,0:6,6:0,0:80,81
8	84795366	.	G	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:0:0:0:0,0:0,0:33,33:0,0	58:0:0:0:6,6:0,0:52,52:0,0
8	85321791	.	C	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||280|RALYL|protein_coding|CODING|ENST00000518566|1|1),INTRON(MODIFIER||||291|RALYL|protein_coding|CODING|ENST00000521268|1|1),INTRON(MODIFIER||||291|RALYL|protein_coding|CODING|ENST00000521695|1|1),INTRON(MODIFIER||||291|RALYL|protein_coding|CODING|ENST00000522455|2|1),INTRON(MODIFIER||||304|RALYL|protein_coding|CODING|ENST00000517638|1|1),INTRON(MODIFIER||||46|RALYL|protein_coding|CODING|ENST00000522647|1|1),INTRON(MODIFIER||||84|RALYL|protein_coding|CODING|ENST00000517988|2|1),INTRON(MODIFIER||||84|RALYL|protein_coding|CODING|ENST00000522613|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:0:0:0:0,0:31,32:0,0:0,0	80:0:0:0:0,0:74,74:6,6:0,0
8	85765108	.	C	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||146|RALYL|protein_coding|CODING|ENST00000521376|3|1),INTRON(MODIFIER||||218|RALYL|protein_coding|CODING|ENST00000523850|4|1),INTRON(MODIFIER||||280|RALYL|protein_coding|CODING|ENST00000518566|4|1),INTRON(MODIFIER||||291|RALYL|protein_coding|CODING|ENST00000521268|5|1),INTRON(MODIFIER||||291|RALYL|protein_coding|CODING|ENST00000521695|5|1),INTRON(MODIFIER||||291|RALYL|protein_coding|CODING|ENST00000522455|6|1),INTRON(MODIFIER||||304|RALYL|protein_coding|CODING|ENST00000517638|5|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:1:0:0:0,0:36,37:0,0:0,0	78:0:0:0:4,4:74,74:0,0:0,0
8	86113454	.	C	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||173|E2F5|protein_coding|CODING|ENST00000521429|1|1),INTRON(MODIFIER||||185|E2F5|protein_coding|CODING|ENST00000517476|1|1),INTRON(MODIFIER||||345|E2F5|protein_coding|CODING|ENST00000418930|1|1),INTRON(MODIFIER||||346|E2F5|protein_coding|CODING|ENST00000416274|1|1),INTRON(MODIFIER||||347|E2F5|protein_coding|CODING|ENST00000256117|1|1),INTRON(MODIFIER|||||E2F5|processed_transcript|CODING|ENST00000519128|1|1),UPSTREAM(MODIFIER||||182|E2F5|protein_coding|CODING|ENST00000518234||1),UPSTREAM(MODIFIER|||||E2F5|retained_intron|CODING|ENST00000521234||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	28:0:0:0:0,0:28,28:0,0:0,0	80:0:0:0:0,0:73,74:0,0:7,7
8	88207589	.	T	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||436|CNBD1|protein_coding|CODING|ENST00000518476|4|1),INTRON(MODIFIER|||||CNBD1|processed_transcript|CODING|ENST00000522427|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:0:0:0:0,0:0,0:0,0:29,29	75:2:0:0:0,0:5,5:1,1:67,69
8	90565816	.	C	A	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	16:0:0:0:0,0:16,17:0,0:0,0	42:0:0:0:13,20:29,37:0,0:0,0
8	91059716	.	C	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||DECR1|nonsense_mediated_decay|CODING|ENST00000517314||1),DOWNSTREAM(MODIFIER|||||DECR1|processed_transcript|CODING|ENST00000523447||1),INTRON(MODIFIER||||326|DECR1|protein_coding|CODING|ENST00000522161|10|1),INTRON(MODIFIER||||335|DECR1|protein_coding|CODING|ENST00000220764|8|1),INTRON(MODIFIER|||||DECR1|nonsense_mediated_decay|CODING|ENST00000517597|7|1),INTRON(MODIFIER|||||DECR1|nonsense_mediated_decay|CODING|ENST00000519328|6|1),INTRON(MODIFIER|||||DECR1|processed_transcript|CODING|ENST00000517301|4|1),INTRON(MODIFIER|||||DECR1|retained_intron|CODING|ENST00000524332|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	44:2:0:0:0,0:42,44:0,0:0,0	92:1:0:0:0,0:87,88:0,0:4,4
8	93031833	.	T	C	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||100|RUNX1T1|protein_coding|CODING|ENST00000521733|2|1),INTRON(MODIFIER||||118|RUNX1T1|protein_coding|CODING|ENST00000523168|2|1),INTRON(MODIFIER||||119|RUNX1T1|protein_coding|CODING|ENST00000517792|1|1),INTRON(MODIFIER||||119|RUNX1T1|protein_coding|CODING|ENST00000520583|2|1),INTRON(MODIFIER||||134|RUNX1T1|protein_coding|CODING|ENST00000517919|2|1),INTRON(MODIFIER||||155|RUNX1T1|protein_coding|CODING|ENST00000522467|3|1),INTRON(MODIFIER||||168|RUNX1T1|protein_coding|CODING|ENST00000519847|3|1),INTRON(MODIFIER||||228|RUNX1T1|protein_coding|CODING|ENST00000518992|2|1),INTRON(MODIFIER||||25|RUNX1T1|protein_coding|CODING|ENST00000519061|3|1),INTRON(MODIFIER||||45|RUNX1T1|protein_coding|CODING|ENST00000518832|1|1),INTRON(MODIFIER||||47|RUNX1T1|protein_coding|CODING|ENST00000520428|3|1),INTRON(MODIFIER||||53|RUNX1T1|protein_coding|CODING|ENST00000518954|4|1),INTRON(MODIFIER||||567|RUNX1T1|protein_coding|CODING|ENST00000360348|1|1),INTRON(MODIFIER||||567|RUNX1T1|protein_coding|CODING|ENST00000520724|1|1),INTRON(MODIFIER||||577|RUNX1T1|protein_coding|CODING|ENST00000396218|1|1),INTRON(MODIFIER||||577|RUNX1T1|protein_coding|CODING|ENST00000518844|5|1),INTRON(MODIFIER||||604|RUNX1T1|protein_coding|CODING|ENST00000265814|1|1),INTRON(MODIFIER||||604|RUNX1T1|protein_coding|CODING|ENST00000523629|2|1),INTRON(MODIFIER||||615|RUNX1T1|protein_coding|CODING|ENST00000436581|1|1),INTRON(MODIFIER||||68|RUNX1T1|protein_coding|CODING|ENST00000518317|2|1),INTRON(MODIFIER||||78|RUNX1T1|protein_coding|CODING|ENST00000518823|3|1),INTRON(MODIFIER||||84|RUNX1T1|protein_coding|CODING|ENST00000520974|3|1),INTRON(MODIFIER||||87|RUNX1T1|protein_coding|CODING|ENST00000521319|2|1),INTRON(MODIFIER||||90|RUNX1T1|protein_coding|CODING|ENST00000520556|1|1),INTRON(MODIFIER||||92|RUNX1T1|protein_coding|CODING|ENST00000521375|2|1),INTRON(MODIFIER|||||RUNX1T1|nonsense_mediated_decay|CODING|ENST00000517493|4|1),INTRON(MODIFIER|||||RUNX1T1|nonsense_mediated_decay|CODING|ENST00000519422|3|1),INTRON(MODIFIER|||||RUNX1T1|nonsense_mediated_decay|CODING|ENST00000519577|3|1),INTRON(MODIFIER|||||RUNX1T1|nonsense_mediated_decay|CODING|ENST00000521897|2|1),INTRON(MODIFIER|||||RUNX1T1|nonsense_mediated_decay|CODING|ENST00000521902|3|1),INTRON(MODIFIER|||||RUNX1T1|nonsense_mediated_decay|CODING|ENST00000524215|3|1),INTRON(MODIFIER|||||RUNX1T1|processed_transcript|CODING|ENST00000518256|3|1),INTRON(MODIFIER|||||RUNX1T1|processed_transcript|CODING|ENST00000520172|3|1),INTRON(MODIFIER|||||RUNX1T1|processed_transcript|CODING|ENST00000522065|2|1),INTRON(MODIFIER|||||RUNX1T1|processed_transcript|CODING|ENST00000522163|3|1),INTRON(MODIFIER|||||RUNX1T1|processed_transcript|CODING|ENST00000522316|1|1),INTRON(MODIFIER|||||RUNX1T1|processed_transcript|CODING|ENST00000522860|4|1),INTRON(MODIFIER|||||RUNX1T1|retained_intron|CODING|ENST00000523290|1|1),UPSTREAM(MODIFIER||||170|RUNX1T1|protein_coding|CODING|ENST00000521054||1),UPSTREAM(MODIFIER||||210|RUNX1T1|protein_coding|CODING|ENST00000521553||1),UPSTREAM(MODIFIER||||567|RUNX1T1|protein_coding|CODING|ENST00000422361||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:0:0:0:0,0:0,0:0,0:35,35	79:0:0:0:0,0:8,8:0,0:71,71
8	93138871	.	A	C	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	16:1:0:0:15,16:0,0:0,0:0,0	52:3:0:0:33,34:13,14:1,1:2,3
8	93284595	.	C	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:0:0:0:0,0:29,29:0,0:0,0	81:1:0:0:8,9:72,73:0,0:0,0
8	93328332	.	T	C	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:0:0:0:0,0:0,0:0,0:36,36	85:0:0:0:0,0:6,6:1,1:78,79
8	93488795	.	A	G	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	41:0:0:0:41,41:0,0:0,0:0,0	80:2:0:0:71,73:0,0:7,7:0,0
8	94221532	.	T	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||LINC00535|processed_transcript|NON_CODING|ENST00000517785||1),DOWNSTREAM(MODIFIER|||||LINC00535|processed_transcript|NON_CODING|ENST00000520096||1),DOWNSTREAM(MODIFIER|||||LINC00535|processed_transcript|NON_CODING|ENST00000520513||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	27:0:0:0:0,0:0,0:0,0:27,27	82:2:0:0:0,0:0,0:7,7:73,74
8	94358059	rs7387545	C	T	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||LINC00535|processed_transcript|NON_CODING|ENST00000501400||1),INTRON(MODIFIER|||||LINC00535|processed_transcript|NON_CODING|ENST00000520096|3|1);RSPOS=94358059;GMAF=0.4821;dbSNPBuildID=116;SSR=0;SAO=0;VP=05010000000507011e000100;WGT=1;VC=SNV;SLO;ASP;VLD;G5A;G5;GNO;KGPhase1;KGPilot123;KGPROD;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	46:0:0:0:0,0:46,46:0,0:0,0	80:1:0:0:0,0:75,75:0,1:4,5
8	94488748	.	G	T	.	PASS	NT=ref;QSS=24;QSS_NT=24;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||LINC00535|processed_transcript|NON_CODING|ENST00000501400|7|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	47:1:0:0:0,0:0,0:46,47:0,0	91:2:0:0:0,0:0,0:79,81:10,10
8	96111136	.	T	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||NDUFAF6|processed_transcript|CODING|ENST00000523184|2|1),UPSTREAM(MODIFIER|||||NDUFAF6|processed_transcript|CODING|ENST00000521063||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:0:0:0:0,0:0,0:0,0:33,33	78:1:0:0:1,1:6,7:1,1:69,73
8	96795639	.	G	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||KB-1047C11.2|processed_transcript|NON_CODING|ENST00000517437|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:0:0:0:0,0:0,0:30,30:0,0	99:0:0:0:0,0:0,0:86,87:13,13
8	98688055	.	A	G	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||526|MTDH|protein_coding|CODING|ENST00000519934|2|1),INTRON(MODIFIER||||582|MTDH|protein_coding|CODING|ENST00000336273|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	44:2:0:0:42,44:0,0:0,0:0,0	78:1:0:0:71,72:0,0:6,6:0,0
8	98717356	.	T	C	.	PASS	NT=ref;QSS=23;QSS_NT=23;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||187|MTDH|protein_coding|CODING|ENST00000521933|2|1),INTRON(MODIFIER||||526|MTDH|protein_coding|CODING|ENST00000519934|6|1),INTRON(MODIFIER||||582|MTDH|protein_coding|CODING|ENST00000336273|7|1),UPSTREAM(MODIFIER|||||MTDH|retained_intron|CODING|ENST00000522104||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	48:2:0:0:0,0:0,0:0,1:46,47	84:1:0:0:1,1:8,9:1,1:73,74
8	99167607	.	C	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1024|POP1|protein_coding|CODING|ENST00000349693|14|1),INTRON(MODIFIER||||1024|POP1|protein_coding|CODING|ENST00000401707|14|1),UPSTREAM(MODIFIER|||||POP1|retained_intron|CODING|ENST00000517435||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	47:0:0:0:0,0:47,47:0,0:0,0	80:1:0:0:0,0:73,73:1,1:5,6
8	100073945	.	A	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1427|VPS13B|protein_coding|CODING|ENST00000395996|3|1),INTRON(MODIFIER||||3997|VPS13B|protein_coding|CODING|ENST00000357162|3|1),INTRON(MODIFIER||||4022|VPS13B|protein_coding|CODING|ENST00000358544|3|1),INTRON(MODIFIER||||415|VPS13B|protein_coding|CODING|ENST00000441350|3|1),INTRON(MODIFIER||||863|VPS13B|protein_coding|CODING|ENST00000355155|3|1),INTRON(MODIFIER|||||VPS13B|nonsense_mediated_decay|CODING|ENST00000496144|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	27:1:0:0:26,27:0,0:0,0:0,0	67:2:0:0:56,58:0,0:8,8:1,1
8	100124636	.	T	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1427|VPS13B|protein_coding|CODING|ENST00000395996|6|1),INTRON(MODIFIER||||3997|VPS13B|protein_coding|CODING|ENST00000357162|6|1),INTRON(MODIFIER||||4022|VPS13B|protein_coding|CODING|ENST00000358544|6|1),INTRON(MODIFIER||||415|VPS13B|protein_coding|CODING|ENST00000441350|6|1),INTRON(MODIFIER||||863|VPS13B|protein_coding|CODING|ENST00000355155|6|1),INTRON(MODIFIER|||||VPS13B|nonsense_mediated_decay|CODING|ENST00000496144|6|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:1:0:0:0,0:0,0:0,0:29,30	69:0:0:0:0,0:0,0:4,4:65,65
8	101132223	.	G	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||135|RGS22|protein_coding|CODING|ENST00000520117|1|1),INTRON(MODIFIER||||268|RGS22|protein_coding|CODING|ENST00000517828|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:1:0:0:0,0:0,0:33,34:0,0	104:1:0:0:0,0:7,7:96,98:0,0
8	101332286	.	A	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||112|RNF19A|protein_coding|CODING|ENST00000522369|1|1),INTRON(MODIFIER||||164|RNF19A|protein_coding|CODING|ENST00000519527|1|1),INTRON(MODIFIER|||||RNF19A|processed_transcript|CODING|ENST00000522182|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:1:0:0:27,29:1,1:0,1:0,0	95:3:0:0:80,82:1,1:0,1:11,12
8	104800474	.	C	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1110|RIMS2|protein_coding|CODING|ENST00000504942|3|1),INTRON(MODIFIER||||1349|RIMS2|protein_coding|CODING|ENST00000406091|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:0:0:0:0,0:37,39:0,0:0,0	71:1:0:0:0,0:62,69:0,0:8,11
8	104800483	.	C	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1110|RIMS2|protein_coding|CODING|ENST00000504942|3|1),INTRON(MODIFIER||||1349|RIMS2|protein_coding|CODING|ENST00000406091|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:0:0:0:0,0:38,40:0,0:0,0	74:1:0:0:0,0:65,73:8,10:0,0
8	105299019	.	G	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:0:0:0:0,0:0,0:31,31:0,0	76:2:0:0:0,0:5,5:69,71:0,0
8	106045638	.	A	G	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-127H5.1|nonsense_mediated_decay|CODING|ENST00000518180|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:0:0:0:30,30:0,0:0,0:0,0	72:1:0:0:63,63:0,1:8,8:0,0
8	106815920	.	T	C	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||1019|ZFPM2|protein_coding|CODING|ENST00000517361||1),DOWNSTREAM(MODIFIER||||882|ZFPM2|protein_coding|CODING|ENST00000378472||1),DOWNSTREAM(MODIFIER|||||ZFPM2|processed_transcript|CODING|ENST00000522296||1),INTRON(MODIFIER|||||RP11-152P17.2|antisense|NON_CODING|ENST00000509144|2|1),INTRON(MODIFIER|||||RP11-152P17.2|antisense|NON_CODING|ENST00000518932|1|1),INTRON(MODIFIER|||||RP11-152P17.2|antisense|NON_CODING|ENST00000520433|2|1),INTRON(MODIFIER|||||RP11-152P17.2|antisense|NON_CODING|ENST00000520594|2|1),INTRON(MODIFIER|||||RP11-152P17.2|antisense|NON_CODING|ENST00000521622|3|1),INTRON(MODIFIER|||||RP11-152P17.2|antisense|NON_CODING|ENST00000524045|2|1),INTRON(MODIFIER|||||RP11-152P17.2|retained_intron|NON_CODING|ENST00000520078|2|1),UTR_3_PRIME(MODIFIER||||1019|ZFPM2|protein_coding|CODING|ENST00000520492|8|1),UTR_3_PRIME(MODIFIER||||1151|ZFPM2|protein_coding|CODING|ENST00000407775|8|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	41:1:0:0:0,0:0,0:0,0:40,41	80:3:0:0:1,1:4,4:0,0:72,75
8	107041121	.	C	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-152P17.2|antisense|NON_CODING|ENST00000509144|1|1),INTRON(MODIFIER|||||RP11-152P17.2|antisense|NON_CODING|ENST00000520433|1|1),INTRON(MODIFIER|||||RP11-152P17.2|antisense|NON_CODING|ENST00000520594|1|1),INTRON(MODIFIER|||||RP11-152P17.2|antisense|NON_CODING|ENST00000521622|2|1),INTRON(MODIFIER|||||RP11-152P17.2|antisense|NON_CODING|ENST00000524045|2|1),INTRON(MODIFIER|||||RP11-152P17.2|retained_intron|NON_CODING|ENST00000520078|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:0:0:0:0,0:34,34:0,0:0,0	67:0:0:0:0,0:62,62:0,0:5,5
8	107065697	rs138833783	C	T	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-152P17.2|antisense|NON_CODING|ENST00000509144|1|1),INTRON(MODIFIER|||||RP11-152P17.2|antisense|NON_CODING|ENST00000520433|1|1),INTRON(MODIFIER|||||RP11-152P17.2|antisense|NON_CODING|ENST00000520594|1|1),INTRON(MODIFIER|||||RP11-152P17.2|antisense|NON_CODING|ENST00000521622|2|1),INTRON(MODIFIER|||||RP11-152P17.2|antisense|NON_CODING|ENST00000524045|2|1),INTRON(MODIFIER|||||RP11-152P17.2|retained_intron|NON_CODING|ENST00000520078|1|1);RSPOS=107065697;GMAF=0.0005;dbSNPBuildID=134;SSR=0;SAO=0;VP=050000000005000014000100;WGT=1;VC=SNV;ASP;KGPhase1;KGPROD	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	43:0:0:0:0,0:43,43:0,0:0,0	74:2:0:0:1,1:66,66:0,1:5,6
8	107086288	.	C	A	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:0:0:0:0,0:40,40:0,0:0,0	79:0:0:0:8,8:71,71:0,0:0,0
8	108216624	.	G	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:0:0:0:0,0:0,0:30,30:0,0	77:2:0:0:9,9:0,0:66,68:0,1
8	108327865	rs72672522	G	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||297|ANGPT1|protein_coding|CODING|ENST00000520052|3|1),INTRON(MODIFIER||||298|ANGPT1|protein_coding|CODING|ENST00000520734|3|1),INTRON(MODIFIER||||497|ANGPT1|protein_coding|CODING|ENST00000297450|4|1),INTRON(MODIFIER||||498|ANGPT1|protein_coding|CODING|ENST00000517746|4|1),INTRON(MODIFIER|||||ANGPT1|processed_transcript|CODING|ENST00000518386|1|1),INTRON(MODIFIER|||||ANGPT1|retained_intron|CODING|ENST00000521950|1|1);RSPOS=108327865;GMAF=0.1364;dbSNPBuildID=130;SSR=0;SAO=0;VP=05000008000503011e000100;GENEINFO=ANGPT1:284;WGT=1;VC=SNV;INT;ASP;G5A;G5;GNO;KGPhase1;KGPilot123;KGPROD;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:1:0:0:0,0:1,1:27,28:1,1	75:0:0:0:7,7:0,0:67,67:1,1
8	109768868	rs187607971	G	A	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||TMEM74|processed_transcript|CODING|ENST00000518838|1|1);RSPOS=109768868;GMAF=0.2038;dbSNPBuildID=135;SSR=0;SAO=0;VP=050000000005000016000100;WGT=1;VC=SNV;ASP;KGPhase1;KGPROD;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	20:1:0:0:0,0:0,0:19,25:0,1	47:5:0:0:9,12:0,0:33,44:0,0
8	109954628	.	T	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-1084E5.1|antisense|NON_CODING|ENST00000522244|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:0:0:0:0,0:0,0:0,0:31,31	80:0:0:0:0,0:6,6:0,0:74,74
8	110740486	.	C	A	.	PASS	NT=ref;QSS=24;QSS_NT=24;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	18:0:1:0:0,0:18,18:0,0:0,0	44:0:4:0:13,13:31,31:0,0:0,0
8	111691282	.	T	G	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	43:0:0:0:0,0:0,0:0,0:43,43	88:0:0:0:0,0:0,0:4,4:84,84
8	113969745	.	C	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||3538|CSMD3|protein_coding|CODING|ENST00000455883|6|1),INTRON(MODIFIER||||3637|CSMD3|protein_coding|CODING|ENST00000352409|7|1),INTRON(MODIFIER||||3667|CSMD3|protein_coding|CODING|ENST00000343508|8|1),INTRON(MODIFIER||||3707|CSMD3|protein_coding|CODING|ENST00000297405|7|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:0:0:0:0,0:29,29:0,0:0,0	84:1:0:0:0,0:76,76:0,1:7,7
8	115164945	.	A	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:1:0:0:29,30:0,0:0,0:0,0	81:1:0:0:74,75:6,6:0,0:0,0
8	115361072	.	T	C	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	41:0:0:0:0,0:0,0:0,0:41,42	96:3:0:0:0,0:8,8:0,0:85,89
8	117673144	.	A	C	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||169|EIF3H|protein_coding|CODING|ENST00000522453|3|1),INTRON(MODIFIER||||234|EIF3H|protein_coding|CODING|ENST00000518995|3|1),INTRON(MODIFIER||||243|EIF3H|protein_coding|CODING|ENST00000518949|2|1),INTRON(MODIFIER||||352|EIF3H|protein_coding|CODING|ENST00000521861|2|1),INTRON(MODIFIER||||366|EIF3H|protein_coding|CODING|ENST00000276682|4|1),INTRON(MODIFIER|||||EIF3H|nonsense_mediated_decay|CODING|ENST00000519046|3|1),INTRON(MODIFIER|||||EIF3H|nonsense_mediated_decay|CODING|ENST00000522800|3|1),INTRON(MODIFIER|||||EIF3H|retained_intron|CODING|ENST00000517974|1|1),INTRON(MODIFIER|||||EIF3H|retained_intron|CODING|ENST00000518034|2|1),UPSTREAM(MODIFIER|||||EIF3H|retained_intron|CODING|ENST00000520289||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:0:0:0:38,38:0,0:0,0:0,0	72:0:0:0:67,67:5,5:0,0:0,0
8	117852531	.	A	T	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||105|UTP23|protein_coding|CODING|ENST00000517820|1|1),INTRON(MODIFIER||||64|UTP23|protein_coding|CODING|ENST00000520733|1|1),INTRON(MODIFIER|||||UTP23|nonsense_mediated_decay|CODING|ENST00000521703|2|1),INTRON(MODIFIER|||||UTP23|nonsense_mediated_decay|CODING|ENST00000524128|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:0:0:0:35,35:1,1:0,0:0,0	63:1:0:0:56,57:0,0:0,0:6,6
8	118225740	.	C	G	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:0:0:0:0,0:31,31:0,0:0,0	66:0:0:0:0,0:61,62:5,5:0,0
8	119330586	.	T	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||153|SAMD12|protein_coding|CODING|ENST00000524796|3|1),INTRON(MODIFIER||||161|SAMD12|protein_coding|CODING|ENST00000409003|4|1),INTRON(MODIFIER|||||AC023590.1|processed_transcript|CODING|ENST00000430457|1|1),INTRON(MODIFIER|||||SAMD12|nonsense_mediated_decay|CODING|ENST00000445741|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:0:0:0:0,0:0,0:0,0:29,31	69:0:0:0:0,0:6,8:0,0:63,64
8	120642842	.	T	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||244|ENPP2|protein_coding|CODING|ENST00000520066|2|1),INTRON(MODIFIER||||863|ENPP2|protein_coding|CODING|ENST00000075322|2|1),INTRON(MODIFIER||||884|ENPP2|protein_coding|CODING|ENST00000427067|2|1),INTRON(MODIFIER||||888|ENPP2|protein_coding|CODING|ENST00000522826|2|1),INTRON(MODIFIER||||915|ENPP2|protein_coding|CODING|ENST00000259486|2|1),INTRON(MODIFIER|||||ENPP2|nonsense_mediated_decay|CODING|ENST00000518958|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:0:0:0:0,0:0,0:1,1:33,33	84:0:0:0:7,7:0,0:0,0:77,77
8	121534112	.	A	G	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||904|MTBP|protein_coding|CODING|ENST00000305949|20|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:0:0:0:35,36:0,0:0,0:0,1	59:2:0:0:52,61:0,0:5,6:0,0
8	121694559	.	C	A	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||538|SNTB1|protein_coding|CODING|ENST00000395601|3|1),INTRON(MODIFIER||||538|SNTB1|protein_coding|CODING|ENST00000517992|2|1),INTRON(MODIFIER|||||SNTB1|processed_transcript|CODING|ENST00000519177|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	21:0:0:0:0,0:21,21:0,0:0,0	74:1:0:0:14,14:59,60:0,0:0,0
8	121814149	.	C	T	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||538|SNTB1|protein_coding|CODING|ENST00000395601|2|1),INTRON(MODIFIER||||538|SNTB1|protein_coding|CODING|ENST00000517992|1|1),INTRON(MODIFIER|||||SNTB1|processed_transcript|CODING|ENST00000519177|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:0:0:0:0,0:37,37:0,0:0,0	85:0:0:0:0,0:80,81:0,0:5,5
8	122086854	.	C	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-369K17.1|lincRNA|NON_CODING|ENST00000517739|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	27:0:0:0:0,0:27,27:0,0:0,0	76:0:0:0:7,7:69,69:0,0:0,0
8	122542015	.	A	G	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	45:1:0:0:44,45:0,0:0,0:0,0	82:0:0:0:76,76:0,0:6,6:0,0
8	122669435	.	A	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:2:0:0:30,32:0,0:0,0:0,0	69:1:0:0:61,62:0,0:7,7:0,0
8	123503765	.	G	A	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||RP11-96B2.1|lincRNA|NON_CODING|ENST00000530350||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:0:0:0:0,0:0,0:40,40:0,0	64:1:0:0:4,4:0,0:59,61:0,0
8	127499935	rs76320606	C	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-103H7.1|lincRNA|NON_CODING|ENST00000520171|2|1);RSPOS=127499935;dbSNPBuildID=131;SSR=0;SAO=0;VP=050100000015000102000100;WGT=1;VC=SNV;SLO;OTH;ASP;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	22:0:10:0:0,0:22,22:0,0:0,0	41:1:37:0:0,0:34,34:0,0:6,7
8	128057997	.	C	G	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:1:0:0:0,0:34,35:0,0:0,0	68:0:0:0:1,1:58,58:8,8:1,1
8	128369206	.	T	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-382A18.1|antisense|NON_CODING|ENST00000501396|1|1),INTRON(MODIFIER|||||RP11-382A18.1|antisense|NON_CODING|ENST00000502082|5|1),INTRON(MODIFIER|||||RP11-382A18.1|antisense|NON_CODING|ENST00000523825|1|1),INTRON(MODIFIER|||||RP11-382A18.2|lincRNA|NON_CODING|ENST00000521586|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	26:0:0:0:0,0:0,0:0,0:26,28	65:1:0:0:0,0:9,10:0,0:55,55
8	128733523	.	A	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-1136L8.1|processed_transcript|NON_CODING|ENST00000502463|1|1),INTRON(MODIFIER|||||RP11-1136L8.1|processed_transcript|NON_CODING|ENST00000519071|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:0:0:0:30,31:0,0:0,0:0,0	100:5:0:0:89,94:0,0:6,6:0,0
8	130173449	.	G	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:0:0:0:0,0:0,0:30,30:0,0	89:0:0:0:9,9:0,0:80,80:0,0
8	131056036	.	A	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:0:0:0:30,30:0,0:0,0:0,0	82:1:0:0:77,78:0,0:4,4:0,0
8	131532407	.	C	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	24:2:0:0:0,0:21,23:0,0:1,1	48:10:0:0:0,0:27,35:0,1:11,13
8	131914687	.	C	A	.	PASS	NT=ref;QSS=27;QSS_NT=27;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||251|ADCY8|protein_coding|CODING|ENST00000522949||1),INTRON(MODIFIER||||1120|ADCY8|protein_coding|CODING|ENST00000377928|7|1),INTRON(MODIFIER||||1251|ADCY8|protein_coding|CODING|ENST00000286355|7|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:0:0:0:0,0:37,37:0,0:0,0	69:0:0:0:12,12:57,57:0,0:0,0
8	132214452	.	T	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:0:0:0:0,0:0,0:0,0:30,31	64:0:0:0:0,0:7,7:0,0:57,57
8	132243288	.	A	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	27:0:0:0:27,27:0,0:0,0:0,0	89:1:0:0:82,83:0,0:0,0:6,8
8	133579779	.	C	A	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||206|LRRC6|protein_coding|CODING|ENST00000522789||1),DOWNSTREAM(MODIFIER||||411|LRRC6|protein_coding|CODING|ENST00000518642||1),DOWNSTREAM(MODIFIER||||466|LRRC6|protein_coding|CODING|ENST00000250173||1),DOWNSTREAM(MODIFIER||||466|LRRC6|protein_coding|CODING|ENST00000519595||1),DOWNSTREAM(MODIFIER|||||LRRC6|retained_intron|CODING|ENST00000522597||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:1:0:0:0,0:37,38:0,0:0,0	89:0:0:0:5,5:84,84:0,0:0,0
8	133941696	.	T	A	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1138|TG|protein_coding|CODING|ENST00000542445|3|1),INTRON(MODIFIER||||2711|TG|protein_coding|CODING|ENST00000377869|22|1),INTRON(MODIFIER||||2768|TG|protein_coding|CODING|ENST00000220616|23|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	43:1:0:0:0,0:0,0:0,0:42,43	64:0:0:0:5,5:0,0:0,0:59,59
8	134878452	.	G	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	22:0:0:0:0,0:0,0:22,22:0,0	32:0:0:0:0,0:0,0:27,27:5,5
8	135476074	.	T	C	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:1:0:0:0,0:1,1:0,0:37,38	75:1:0:0:1,1:13,14:1,1:59,62
8	135479019	rs62523687	G	A	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=135479019;GMAF=0.1928;dbSNPBuildID=129;SSR=0;SAO=0;VP=050100000005030116000100;WGT=1;VC=SNV;SLO;ASP;G5A;G5;GNO;KGPhase1;KGPROD;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:1:0:0:0,0:1,1:37,38:0,0	88:2:0:0:6,7:0,0:80,81:0,0
8	135899181	.	A	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:2:0:0:29,31:0,0:0,0:0,0	75:0:0:0:68,68:1,1:0,0:6,6
8	136308189	.	G	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-452N4.1|lincRNA|NON_CODING|ENST00000520101|3|1),INTRON(MODIFIER|||||RP11-452N4.1|lincRNA|NON_CODING|ENST00000522279|4|1),INTRON(MODIFIER|||||RP11-452N4.1|lincRNA|NON_CODING|ENST00000524070|4|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	28:0:0:0:0,0:0,0:28,28:0,0	88:0:0:0:0,0:0,0:82,83:6,6
8	136566678	.	T	G	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||KHDRBS3|retained_intron|CODING|ENST00000519600||1),INTRON(MODIFIER||||119|KHDRBS3|protein_coding|CODING|ENST00000520981|2|1),INTRON(MODIFIER||||159|KHDRBS3|protein_coding|CODING|ENST00000517394|4|1),INTRON(MODIFIER||||264|KHDRBS3|protein_coding|CODING|ENST00000524199|4|1),INTRON(MODIFIER||||346|KHDRBS3|protein_coding|CODING|ENST00000355849|4|1),UPSTREAM(MODIFIER|||||KHDRBS3|processed_transcript|CODING|ENST00000522079||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:0:0:0:0,0:0,0:0,0:35,35	78:0:0:0:0,0:0,0:4,4:74,74
8	137309627	.	C	G	.	PASS	NT=ref;QSS=24;QSS_NT=24;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:0:0:0:0,0:33,33:0,0:0,0	92:0:0:0:0,0:77,77:15,15:0,0
8	138248106	rs199964895	G	A	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=138248106;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	72:1:0:0:2,4:0,0:67,84:2,2	179:3:0:0:10,17:0,0:165,229:1,3
8	138248114	rs202167486	T	G	.	PASS	NT=ref;QSS=32;QSS_NT=32;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=138248114;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	67:1:0:0:0,0:0,0:0,1:66,82	176:3:0:0:0,0:0,0:10,16:163,228
8	139163730	.	C	A	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=EXON(MODIFIER|||||FAM135B|nonsense_mediated_decay|CODING|ENST00000276737|13|1),EXON(MODIFIER|||||FAM135B|nonsense_mediated_decay|CODING|ENST00000467365|1|1),NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|caG/caT|Q996H|1406|FAM135B|protein_coding|CODING|ENST00000395297|13|1),UPSTREAM(MODIFIER|||||FAM135B|retained_intron|CODING|ENST00000395295||1),UTR_3_PRIME(MODIFIER|||||FAM135B|nonsense_mediated_decay|CODING|ENST00000482951|14|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	41:1:0:0:0,0:40,41:0,0:0,0	82:0:0:0:5,5:77,77:0,0:0,0
8	139219039	rs201970975	T	C	.	PASS	NT=ref;QSS=23;QSS_NT=23;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1406|FAM135B|protein_coding|CODING|ENST00000395297|7|1),INTRON(MODIFIER|||||FAM135B|nonsense_mediated_decay|CODING|ENST00000276737|7|1),INTRON(MODIFIER|||||FAM135B|nonsense_mediated_decay|CODING|ENST00000482951|8|1);RSPOS=139219039;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000080005000002000100;WGT=1;VC=SNV;INT;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	55:6:0:0:0,0:0,2:3,5:46,73	135:11:0:0:0,0:10,14:0,2:114,157
8	139362197	.	G	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1406|FAM135B|protein_coding|CODING|ENST00000395297|2|1),INTRON(MODIFIER||||152|FAM135B|protein_coding|CODING|ENST00000160713|2|1),INTRON(MODIFIER||||67|FAM135B|protein_coding|CODING|ENST00000520380|2|1),INTRON(MODIFIER|||||FAM135B|nonsense_mediated_decay|CODING|ENST00000276737|2|1),INTRON(MODIFIER|||||FAM135B|nonsense_mediated_decay|CODING|ENST00000482951|3|1),INTRON(MODIFIER|||||FAM135B|processed_transcript|CODING|ENST00000517849|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:1:0:0:0,0:0,0:34,35:0,0	70:0:0:0:0,0:0,0:64,64:6,6
8	139460553	.	C	A	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||FAM135B|processed_transcript|CODING|ENST00000523049||1),INTRON(MODIFIER||||1406|FAM135B|protein_coding|CODING|ENST00000395297|1|1),INTRON(MODIFIER||||67|FAM135B|protein_coding|CODING|ENST00000520380|1|1),INTRON(MODIFIER|||||FAM135B|nonsense_mediated_decay|CODING|ENST00000276737|1|1),INTRON(MODIFIER|||||FAM135B|nonsense_mediated_decay|CODING|ENST00000482951|1|1),INTRON(MODIFIER|||||FAM135B|processed_transcript|CODING|ENST00000517849|1|1),INTRON(MODIFIER|||||FAM135B|processed_transcript|CODING|ENST00000520283|1|1),INTRON(MODIFIER|||||FAM135B|processed_transcript|CODING|ENST00000520954|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:0:0:0:0,0:37,37:0,0:0,0	74:1:0:0:7,8:66,66:0,0:0,0
8	139460554	.	C	A	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||FAM135B|processed_transcript|CODING|ENST00000523049||1),INTRON(MODIFIER||||1406|FAM135B|protein_coding|CODING|ENST00000395297|1|1),INTRON(MODIFIER||||67|FAM135B|protein_coding|CODING|ENST00000520380|1|1),INTRON(MODIFIER|||||FAM135B|nonsense_mediated_decay|CODING|ENST00000276737|1|1),INTRON(MODIFIER|||||FAM135B|nonsense_mediated_decay|CODING|ENST00000482951|1|1),INTRON(MODIFIER|||||FAM135B|processed_transcript|CODING|ENST00000517849|1|1),INTRON(MODIFIER|||||FAM135B|processed_transcript|CODING|ENST00000520283|1|1),INTRON(MODIFIER|||||FAM135B|processed_transcript|CODING|ENST00000520954|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:0:0:0:0,0:37,37:0,0:0,0	74:1:0:0:7,8:66,66:0,0:0,0
8	139703644	.	A	G	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1606|COL22A1|protein_coding|CODING|ENST00000435777|35|1),INTRON(MODIFIER||||1626|COL22A1|protein_coding|CODING|ENST00000303045|35|1),INTRON(MODIFIER|||||COL22A1|processed_transcript|CODING|ENST00000341807|10|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:0:0:0:29,29:0,0:0,0:0,0	75:5:0:0:57,58:1,1:12,16:0,0
8	140767835	rs13281621	G	T	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1139|TRAPPC9|protein_coding|CODING|ENST00000389327|20|1),INTRON(MODIFIER||||1148|TRAPPC9|protein_coding|CODING|ENST00000438773|21|1),INTRON(MODIFIER||||1246|TRAPPC9|protein_coding|CODING|ENST00000389328|21|1),INTRON(MODIFIER|||||TRAPPC9|processed_transcript|CODING|ENST00000519482|1|1),INTRON(MODIFIER|||||TRAPPC9|processed_transcript|CODING|ENST00000521667|10|1),INTRON(MODIFIER|||||TRAPPC9|processed_transcript|CODING|ENST00000521700|1|1),INTRON(MODIFIER|||||TRAPPC9|processed_transcript|CODING|ENST00000522504|1|1),INTRON(MODIFIER|||||TRAPPC9|processed_transcript|CODING|ENST00000523777|5|1),INTRON(MODIFIER|||||TRAPPC9|processed_transcript|CODING|ENST00000524162|4|1);RSPOS=140767835;dbSNPBuildID=121;SSR=0;SAO=0;VP=050000080001040002000100;GENEINFO=TRAPPC9:83696;WGT=1;VC=SNV;INT;VLD;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	27:2:0:0:0,0:0,0:25,45:0,0	56:4:0:0:0,0:0,0:42,57:10,10
8	140971478	.	C	A	.	PASS	NT=ref;QSS=17;QSS_NT=16;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1139|TRAPPC9|protein_coding|CODING|ENST00000389327|18|1),INTRON(MODIFIER||||1148|TRAPPC9|protein_coding|CODING|ENST00000438773|19|1),INTRON(MODIFIER||||1246|TRAPPC9|protein_coding|CODING|ENST00000389328|19|1),INTRON(MODIFIER|||||TRAPPC9|processed_transcript|CODING|ENST00000521667|8|1),INTRON(MODIFIER|||||TRAPPC9|processed_transcript|CODING|ENST00000523777|3|1),INTRON(MODIFIER|||||TRAPPC9|processed_transcript|CODING|ENST00000524162|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	15:1:0:0:0,0:14,16:0,1:0,0	43:3:0:0:10,13:30,34:0,0:0,0
8	142067375	.	A	G	.	PASS	NT=ref;QSS=24;QSS_NT=24;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=EXON(MODIFIER|||||RP11-128L5.1|lincRNA|NON_CODING|ENST00000517606|2|1),UPSTREAM(MODIFIER|||||RP11-128L5.1|lincRNA|NON_CODING|ENST00000522882||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	49:0:0:0:49,49:0,0:0,0:0,0	65:0:0:0:61,62:0,0:4,4:0,0
8	142101732	.	T	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	27:0:0:0:0,0:0,0:0,0:27,27	81:4:0:0:1,1:10,13:0,0:66,69
8	142953397	.	G	A	.	PASS	NT=ref;QSS=25;QSS_NT=25;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	66:10:0:0:0,0:0,0:56,82:0,0	172:21:0:0:8,9:0,0:143,223:0,1
8	143051986	.	A	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||RP11-953B20.2|processed_pseudogene|NON_CODING|ENST00000523974||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:1:0:0:34,35:1,1:0,0:0,0	95:2:0:0:87,92:0,1:6,8:0,0
8	143223215	.	T	C	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	45:2:0:0:0,0:0,1:0,0:43,44	89:2:0:0:0,0:4,6:0,0:83,85
8	143691222	.	A	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||396|ARC|protein_coding|CODING|ENST00000356613||1),DOWNSTREAM(MODIFIER|||||ARC|processed_transcript|CODING|ENST00000581404||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:1:0:0:31,33:0,0:0,0:0,0	82:1:0:0:77,79:0,0:4,4:0,0
8	143691508	.	G	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=DOWNSTREAM(MODIFIER||||396|ARC|protein_coding|CODING|ENST00000356613||1),DOWNSTREAM(MODIFIER|||||ARC|processed_transcript|CODING|ENST00000581404||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:3:0:0:0,1:1,1:35,44:0,0	82:5:0:0:7,7:0,0:70,95:0,0
8	144152482	rs5027517	T	C	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||RP11-520P18.1|processed_pseudogene|NON_CODING|ENST00000485679||1);RSPOS=144152482;RV;dbSNPBuildID=113;SSR=0;SAO=0;VP=050000000001000002000100;WGT=1;VC=SNV;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	42:2:0:0:0,0:0,0:0,0:40,42	75:2:1:0:0,1:6,7:0,0:67,68
8	144154108	.	C	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	21:0:0:0:0,0:21,31:0,1:0,1	54:5:0:0:0,0:36,45:0,2:13,17
8	144223909	.	G	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:1:0:0:0,0:0,0:34,37:0,0	54:5:0:0:5,6:1,1:43,47:0,0
8	144275849	.	T	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:1:0:0:0,0:0,1:1,1:30,31	64:1:0:0:1,1:10,10:2,2:50,52
8	144344305	.	C	G	.	PASS	NT=ref;QSS=24;QSS_NT=24;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||198|ZFP41|protein_coding|CODING|ENST00000522452|2|1),UTR_3_PRIME(MODIFIER||||198|ZFP41|protein_coding|CODING|ENST00000330701|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	48:2:0:0:0,0:46,48:0,0:0,0	76:2:0:0:0,0:66,68:8,9:0,0
8	144378659	.	C	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||106|ZNF696|protein_coding|CODING|ENST00000518432||1),DOWNSTREAM(MODIFIER||||111|ZNF696|protein_coding|CODING|ENST00000523891||1),DOWNSTREAM(MODIFIER||||203|ZNF696|protein_coding|CODING|ENST00000518575||1),DOWNSTREAM(MODIFIER||||37|ZNF696|protein_coding|CODING|ENST00000521537||1),DOWNSTREAM(MODIFIER|||||ZNF696|nonsense_mediated_decay|CODING|ENST00000520333||1),NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|Cag/Aag|Q272K|374|ZNF696|protein_coding|CODING|ENST00000330143|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:3:0:0:0,0:28,31:0,1:0,0	89:2:0:0:6,6:81,82:0,1:0,0
8	144390268	rs74210000	T	C	.	PASS	NT=ref;QSS=32;QSS_NT=32;SGT=TT->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=DOWNSTREAM(MODIFIER||||503|TOP1MT|protein_coding|CODING|ENST00000519148||1),DOWNSTREAM(MODIFIER||||503|TOP1MT|protein_coding|CODING|ENST00000521193||1),DOWNSTREAM(MODIFIER||||503|TOP1MT|protein_coding|CODING|ENST00000523676||1),DOWNSTREAM(MODIFIER||||601|TOP1MT|protein_coding|CODING|ENST00000329245||1),DOWNSTREAM(MODIFIER|||||TOP1MT|retained_intron|CODING|ENST00000517857||1),INTERGENIC(MODIFIER||||||||||1);RSPOS=144390268;dbSNPBuildID=130;SSR=0;SAO=0;VP=050100000001040102000100;WGT=1;VC=SNV;SLO;VLD;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:3:0:0:0,0:0,0:1,1:27,31	48:6:0:0:0,0:13,13:2,6:27,33
8	145215516	.	C	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1632|HEATR7A|protein_coding|CODING|ENST00000534366|1|1),INTRON(MODIFIER||||1641|HEATR7A|protein_coding|CODING|ENST00000398656|1|1),INTRON(MODIFIER||||422|HEATR7A|protein_coding|CODING|ENST00000423230|1|1),INTRON(MODIFIER|||||HEATR7A|retained_intron|CODING|ENST00000525287|1|1),INTRON(MODIFIER|||||HEATR7A|retained_intron|CODING|ENST00000527552|1|1),INTRON(MODIFIER|||||HEATR7A|retained_intron|CODING|ENST00000532255|1|1),UPSTREAM(MODIFIER||||1641|HEATR7A|protein_coding|CODING|ENST00000326134||1),UPSTREAM(MODIFIER||||1641|HEATR7A|protein_coding|CODING|ENST00000528919||1),UPSTREAM(MODIFIER|||||AC104592.1|miRNA|NON_CODING|ENST00000578410||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:2:0:0:0,0:32,34:0,0:0,0	76:1:0:0:0,0:71,77:0,0:4,4
9	111486	rs201095533	A	G	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||439|FOXD4|protein_coding|CODING|ENST00000382500||1),DOWNSTREAM(MODIFIER|||||RP11-143M1.4|lincRNA|NON_CODING|ENST00000416242||1),INTERGENIC(MODIFIER||||||||||1);RSPOS=111486;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:0:0:0:31,31:0,0:0,0:0,0	69:0:0:0:60,62:0,0:9,9:0,0
9	111518	rs201799520	C	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||439|FOXD4|protein_coding|CODING|ENST00000382500||1),DOWNSTREAM(MODIFIER|||||RP11-143M1.4|lincRNA|NON_CODING|ENST00000416242||1),INTERGENIC(MODIFIER||||||||||1);RSPOS=111518;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:0:0:0:0,0:29,29:0,0:0,0	65:0:0:0:0,0:57,57:0,0:8,8
9	112773	.	T	A	.	PASS	NT=ref;QSS=23;QSS_NT=23;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||439|FOXD4|protein_coding|CODING|ENST00000382500||1),EXON(MODIFIER|||||RP11-143M1.4|lincRNA|NON_CODING|ENST00000416242|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	46:0:0:0:0,0:1,1:0,0:45,45	71:1:0:0:6,6:0,0:0,0:64,65
9	199785	rs112565171	T	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=199785;dbSNPBuildID=132;SSR=0;SAO=0;VP=050000000001000002000100;WGT=1;VC=SNV;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	24:1:0:0:0,0:0,0:0,0:23,24	35:0:0:0:0,0:5,6:0,0:30,31
9	199796	rs62533290	C	A	.	PASS	NT=ref;QSS=23;QSS_NT=23;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=199796;dbSNPBuildID=129;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	23:1:0:0:0,0:22,23:0,0:0,0	35:0:0:0:8,9:27,27:0,0:0,0
9	234702	.	T	C	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||2031|DOCK8|protein_coding|CODING|ENST00000432829|1|1),INTRON(MODIFIER||||2099|DOCK8|protein_coding|CODING|ENST00000453981|1|1),INTRON(MODIFIER||||65|DOCK8|protein_coding|CODING|ENST00000479404|1|1),INTRON(MODIFIER|||||DOCK8|nonsense_mediated_decay|CODING|ENST00000469197|1|1),INTRON(MODIFIER|||||DOCK8|nonsense_mediated_decay|CODING|ENST00000524396|2|1),INTRON(MODIFIER|||||DOCK8|retained_intron|CODING|ENST00000454469|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:0:0:0:0,0:0,0:0,0:36,36	80:2:0:0:0,0:7,7:0,0:71,73
9	1072613	.	C	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:0:0:0:1,1:29,29:0,0:0,0	64:0:0:0:1,1:58,58:0,0:5,5
9	2985358	.	C	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||CARM1P1|transcribed_unprocessed_pseudogene|NON_CODING|ENST00000426329|4|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:0:0:0:0,0:33,33:0,0:0,0	61:1:0:0:5,5:55,57:0,0:0,0
9	3925833	.	T	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||775|GLIS3|protein_coding|CODING|ENST00000324333|5|1),INTRON(MODIFIER||||930|GLIS3|protein_coding|CODING|ENST00000381971|6|1),INTRON(MODIFIER|||||GLIS3|processed_transcript|CODING|ENST00000461870|3|1),INTRON(MODIFIER|||||GLIS3|retained_intron|CODING|ENST00000463680|2|1),INTRON(MODIFIER|||||GLIS3|retained_intron|CODING|ENST00000467497|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:1:0:0:0,0:0,0:0,0:34,35	90:2:0:0:4,4:0,0:0,0:84,86
9	4292228	.	A	G	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||243|GLIS3|protein_coding|CODING|ENST00000477901|1|1),INTRON(MODIFIER||||243|GLIS3|protein_coding|CODING|ENST00000481827|1|1),INTRON(MODIFIER||||88|GLIS3|protein_coding|CODING|ENST00000478844|1|1),INTRON(MODIFIER||||930|GLIS3|protein_coding|CODING|ENST00000381971|1|1),INTRON(MODIFIER|||||GLIS3|nonsense_mediated_decay|CODING|ENST00000491889|1|1),INTRON(MODIFIER|||||GLIS3|processed_transcript|CODING|ENST00000471664|4|1),INTRON(MODIFIER|||||GLIS3|processed_transcript|CODING|ENST00000490709|1|1),INTRON(MODIFIER|||||GLIS3|retained_intron|CODING|ENST00000465708|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:1:0:0:32,33:0,0:0,0:0,0	70:0:0:0:63,63:0,0:7,7:0,0
9	5396476	.	A	G	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||147|PLGRKT|protein_coding|CODING|ENST00000223864|3|1),INTRON(MODIFIER|||||PLGRKT|processed_transcript|CODING|ENST00000472145|3|1),INTRON(MODIFIER|||||PLGRKT|processed_transcript|CODING|ENST00000473877|2|1),INTRON(MODIFIER|||||PLGRKT|processed_transcript|CODING|ENST00000482696|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:0:0:0:36,36:0,0:0,0:0,0	68:1:1:0:61,61:0,0:6,7:0,0
9	5396484	.	A	G	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||147|PLGRKT|protein_coding|CODING|ENST00000223864|3|1),INTRON(MODIFIER|||||PLGRKT|processed_transcript|CODING|ENST00000472145|3|1),INTRON(MODIFIER|||||PLGRKT|processed_transcript|CODING|ENST00000473877|2|1),INTRON(MODIFIER|||||PLGRKT|processed_transcript|CODING|ENST00000482696|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:0:0:0:36,36:0,0:0,0:0,0	73:2:0:0:65,66:0,0:6,8:0,0
9	5396499	.	T	G	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||147|PLGRKT|protein_coding|CODING|ENST00000223864|3|1),INTRON(MODIFIER|||||PLGRKT|processed_transcript|CODING|ENST00000472145|3|1),INTRON(MODIFIER|||||PLGRKT|processed_transcript|CODING|ENST00000473877|2|1),INTRON(MODIFIER|||||PLGRKT|processed_transcript|CODING|ENST00000482696|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:0:0:0:0,0:1,1:0,0:33,33	77:0:0:0:0,0:0,0:9,9:68,69
9	5432921	.	G	A	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||147|PLGRKT|protein_coding|CODING|ENST00000223864|2|1),INTRON(MODIFIER|||||PLGRKT|processed_transcript|CODING|ENST00000472145|2|1),INTRON(MODIFIER|||||PLGRKT|processed_transcript|CODING|ENST00000473877|1|1),INTRON(MODIFIER|||||PLGRKT|processed_transcript|CODING|ENST00000482696|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	43:1:0:0:0,0:0,0:42,44:0,0	79:1:0:0:4,6:0,0:74,76:0,0
9	6772629	.	G	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1047|KDM4C|protein_coding|CODING|ENST00000381306|1|1),INTRON(MODIFIER||||1056|KDM4C|protein_coding|CODING|ENST00000381309|1|1),INTRON(MODIFIER||||151|KDM4C|protein_coding|CODING|ENST00000401787|1|1),INTRON(MODIFIER||||629|KDM4C|protein_coding|CODING|ENST00000536108|1|1),INTRON(MODIFIER||||801|KDM4C|protein_coding|CODING|ENST00000442236|1|1),INTRON(MODIFIER||||813|KDM4C|protein_coding|CODING|ENST00000543771|1|1),INTRON(MODIFIER||||835|KDM4C|protein_coding|CODING|ENST00000535193|1|1),INTRON(MODIFIER|||||KDM4C|nonsense_mediated_decay|CODING|ENST00000438023|1|1),INTRON(MODIFIER|||||KDM4C|processed_transcript|CODING|ENST00000489243|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:0:0:0:0,0:0,0:30,30:0,0	84:1:0:0:4,4:0,0:79,80:0,0
9	9006751	.	G	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1912|PTPRD|protein_coding|CODING|ENST00000381196|10|1),INTRON(MODIFIER||||202|PTPRD|protein_coding|CODING|ENST00000463477|12|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:0:0:0:0,0:0,0:31,31:0,0	79:4:0:0:4,4:0,1:70,73:1,1
9	9900908	.	C	A	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1912|PTPRD|protein_coding|CODING|ENST00000381196|4|1),INTRON(MODIFIER||||202|PTPRD|protein_coding|CODING|ENST00000463477|5|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	41:0:0:0:0,0:41,42:0,0:0,0	76:0:0:0:9,9:67,67:0,0:0,0
9	11909843	.	C	A	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:0:0:0:0,0:40,40:0,0:0,0	89:0:0:0:8,8:81,81:0,0:0,0
9	15312308	.	G	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER||||613|TTC39B|protein_coding|CODING|ENST00000297615||1),UPSTREAM(MODIFIER||||616|TTC39B|protein_coding|CODING|ENST00000355694||1),UPSTREAM(MODIFIER||||669|TTC39B|protein_coding|CODING|ENST00000380850||1),UPSTREAM(MODIFIER||||682|TTC39B|protein_coding|CODING|ENST00000512701||1),UPSTREAM(MODIFIER|||||TTC39B|retained_intron|CODING|ENST00000505732||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:0:0:0:0,0:0,0:35,35:0,0	69:1:0:0:0,0:0,0:63,65:5,5
9	17189521	.	A	G	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1405|CNTLN|protein_coding|CODING|ENST00000262360|2|1),INTRON(MODIFIER||||1406|CNTLN|protein_coding|CODING|ENST00000380647|2|1),INTRON(MODIFIER||||1406|CNTLN|protein_coding|CODING|ENST00000425824|2|1),INTRON(MODIFIER||||391|CNTLN|protein_coding|CODING|ENST00000380641|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:2:0:0:33,35:0,0:0,0:0,0	68:1:0:0:59,59:0,0:8,9:0,0
9	18428555	.	C	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:0:0:0:1,1:38,38:0,0:0,0	91:1:0:0:0,0:86,87:0,0:4,4
9	21618160	.	C	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:0:0:0:0,0:37,37:0,0:0,0	78:0:0:0:0,0:74,74:0,0:4,4
9	22090332	.	G	T	.	PASS	NT=ref;QSS=24;QSS_NT=24;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||CDKN2B-AS1|antisense|NON_CODING|ENST00000421632|3|1),INTRON(MODIFIER|||||CDKN2B-AS1|antisense|NON_CODING|ENST00000428597|12|1),INTRON(MODIFIER|||||CDKN2B-AS1|antisense|NON_CODING|ENST00000577551|3|1),INTRON(MODIFIER|||||CDKN2B-AS1|antisense|NON_CODING|ENST00000580576|6|1),INTRON(MODIFIER|||||CDKN2B-AS1|antisense|NON_CODING|ENST00000581051|4|1),INTRON(MODIFIER|||||CDKN2B-AS1|antisense|NON_CODING|ENST00000582072|4|1),INTRON(MODIFIER|||||CDKN2B-AS1|antisense|NON_CODING|ENST00000584020|3|1),INTRON(MODIFIER|||||CDKN2B-AS1|antisense|NON_CODING|ENST00000584637|4|1),INTRON(MODIFIER|||||CDKN2B-AS1|antisense|NON_CODING|ENST00000584816|3|1),INTRON(MODIFIER|||||CDKN2B-AS1|antisense|NON_CODING|ENST00000585267|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	44:0:0:0:0,0:0,0:44,46:0,0	63:2:0:0:0,0:0,0:53,58:8,8
9	23077930	rs199941157	C	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=23077930;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000000001000402000100;WGT=1;VC=SNV;HD;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	26:0:1:0:0,0:26,28:0,0:0,0	44:1:0:0:0,0:37,40:0,0:6,7
9	24732683	.	G	T	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	41:2:0:0:0,1:0,0:39,40:0,0	66:1:0:0:0,0:0,0:59,60:6,7
9	25124398	.	A	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	28:0:0:0:28,28:0,0:0,0:0,0	73:0:0:0:68,69:0,0:5,5:0,0
9	28743925	.	A	G	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:0:0:0:30,30:0,0:0,0:0,0	63:0:0:0:55,55:0,0:8,8:0,0
9	30154218	.	G	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:0:0:0:0,0:0,0:30,30:0,0	74:1:0:0:0,0:0,0:68,69:5,5
9	30401434	.	C	T	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	41:1:0:0:0,0:40,42:0,0:0,0	78:0:0:0:0,0:74,74:0,0:4,4
9	30908368	.	G	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:0:0:0:0,0:0,0:30,31:0,0	71:0:0:0:6,6:0,0:65,65:0,0
9	31157832	.	C	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:2:0:0:0,1:35,36:0,0:0,0	74:0:0:0:0,0:69,69:0,0:5,5
9	31471190	.	C	T	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	44:0:0:0:0,0:44,44:0,0:0,0	87:0:0:0:0,0:80,80:0,0:7,7
9	32270266	.	A	G	.	PASS	NT=ref;QSS=23;QSS_NT=23;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	46:0:0:0:46,46:0,0:0,0:0,0	83:0:0:0:75,75:0,0:7,7:1,1
9	33184187	.	A	G	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||RP11-326F20.5|antisense|NON_CODING|ENST00000426270||1),DOWNSTREAM(MODIFIER|||||RP11-326F20.5|antisense|NON_CODING|ENST00000442432||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:0:0:0:29,29:0,0:0,0:0,0	72:3:0:0:60,64:0,0:9,10:0,0
9	33361903	.	T	C	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1024|NFX1|protein_coding|CODING|ENST00000379521|19|1),INTRON(MODIFIER||||1120|NFX1|protein_coding|CODING|ENST00000379540|19|1),UPSTREAM(MODIFIER|||||NFX1|processed_transcript|CODING|ENST00000463421||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:2:0:0:0,0:0,0:0,0:36,38	70:1:0:0:0,0:6,7:0,0:63,65
9	33451926	.	T	G	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER||||292|AQP3|protein_coding|CODING|ENST00000297991||1),UPSTREAM(MODIFIER|||||AQP3|processed_transcript|CODING|ENST00000463983||1),UPSTREAM(MODIFIER|||||AQP3|processed_transcript|CODING|ENST00000473153||1),UPSTREAM(MODIFIER|||||AQP3|processed_transcript|CODING|ENST00000493581||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	44:0:0:0:0,0:0,0:0,0:44,44	72:1:0:0:0,0:0,0:5,5:66,67
9	33523545	rs201684068	C	A	.	PASS	NT=ref;QSS=27;QSS_NT=27;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER||||1011|ANKRD18B|protein_coding|CODING|ENST00000290943||1);RSPOS=33523545;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	56:1:0:0:0,0:55,58:0,1:0,0	84:4:0:0:6,10:74,77:0,0:0,0
9	33936498	.	G	A	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=GG->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER||||1119|UBAP2|protein_coding|CODING|ENST00000360802|16|1),INTRON(MODIFIER||||1119|UBAP2|protein_coding|CODING|ENST00000379238|16|1),INTRON(MODIFIER||||1119|UBAP2|protein_coding|CODING|ENST00000449054|16|1),INTRON(MODIFIER||||325|UBAP2|protein_coding|CODING|ENST00000379225|4|1),INTRON(MODIFIER||||686|UBAP2|protein_coding|CODING|ENST00000418786|14|1),INTRON(MODIFIER||||852|UBAP2|protein_coding|CODING|ENST00000379239|12|1),INTRON(MODIFIER||||874|UBAP2|protein_coding|CODING|ENST00000539807|10|1),INTRON(MODIFIER|||||UBAP2|nonsense_mediated_decay|CODING|ENST00000488443|1|1),UPSTREAM(MODIFIER|||||SNORD121B|snoRNA|NON_CODING|ENST00000458838||1),UPSTREAM(MODIFIER|||||UBAP2|processed_transcript|CODING|ENST00000474372||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:0:0:0:0,0:0,0:40,40:0,0	71:1:0:0:5,5:0,0:65,66:0,0
9	34112781	.	A	G	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||188|DCAF12|protein_coding|CODING|ENST00000450964|2|1),INTRON(MODIFIER||||226|DCAF12|protein_coding|CODING|ENST00000396990|2|1),INTRON(MODIFIER||||453|DCAF12|protein_coding|CODING|ENST00000361264|2|1),INTRON(MODIFIER|||||DCAF12|processed_transcript|CODING|ENST00000463286|2|1),UPSTREAM(MODIFIER|||||RP11-537H15.5|processed_pseudogene|NON_CODING|ENST00000454125||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:0:0:0:35,35:1,1:0,0:0,0	70:1:0:0:63,64:1,1:5,6:0,0
9	34115312	rs111355052	A	G	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||188|DCAF12|protein_coding|CODING|ENST00000450964|2|1),INTRON(MODIFIER||||226|DCAF12|protein_coding|CODING|ENST00000396990|2|1),INTRON(MODIFIER||||453|DCAF12|protein_coding|CODING|ENST00000361264|2|1),INTRON(MODIFIER|||||DCAF12|processed_transcript|CODING|ENST00000463286|2|1);RSPOS=34115312;dbSNPBuildID=132;SSR=0;SAO=0;VP=050000080001040102000100;GENEINFO=DCAF12:25853;WGT=1;VC=SNV;INT;VLD;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:0:0:0:32,34:0,0:0,0:0,0	58:0:0:0:50,62:0,0:8,9:0,0
9	34147238	.	T	C	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:0:0:0:0,0:0,0:0,0:37,38	66:3:0:0:0,0:9,9:0,0:54,57
9	36482175	.	C	A	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RNF38|processed_transcript|CODING|ENST00000488058|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:3:0:0:0,0:35,39:0,0:0,0	58:1:0:0:4,4:53,55:0,0:0,0
9	37083508	.	C	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||RP11-220I1.1|lincRNA|NON_CODING|ENST00000588557||1),INTRON(MODIFIER|||||RP11-220I1.1|lincRNA|NON_CODING|ENST00000429493|1|1),INTRON(MODIFIER|||||RP11-220I1.1|lincRNA|NON_CODING|ENST00000430809|1|1),INTRON(MODIFIER|||||RP11-220I1.1|lincRNA|NON_CODING|ENST00000588403|1|1),INTRON(MODIFIER|||||RP11-220I1.1|lincRNA|NON_CODING|ENST00000592157|1|1),INTRON(MODIFIER|||||RP11-220I1.1|lincRNA|NON_CODING|ENST00000593237|1|1),UPSTREAM(MODIFIER|||||RP11-220I1.1|lincRNA|NON_CODING|ENST00000588314||1),UPSTREAM(MODIFIER|||||RP11-220I1.5|lincRNA|NON_CODING|ENST00000569583||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:1:0:0:0,0:29,30:0,0:0,0	79:0:0:0:7,7:71,71:0,0:1,1
9	37199923	.	A	G	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER||||253|ZCCHC7|protein_coding|CODING|ENST00000534928|1|1),INTRON(MODIFIER||||543|ZCCHC7|protein_coding|CODING|ENST00000336755|2|1),INTRON(MODIFIER|||||ZCCHC7|processed_transcript|CODING|ENST00000461038|2|1),INTRON(MODIFIER|||||ZCCHC7|processed_transcript|CODING|ENST00000488607|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:0:0:0:31,31:0,0:0,0:0,0	57:2:0:0:48,52:0,0:7,7:0,0
9	37805859	.	A	G	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||522|DCAF10|protein_coding|CODING|ENST00000242323|1|1),INTRON(MODIFIER||||559|DCAF10|protein_coding|CODING|ENST00000377724|1|1),INTRON(MODIFIER|||||RP11-613M10.9|nonsense_mediated_decay|NON_CODING|ENST00000540557|8|1),UPSTREAM(MODIFIER|||||EXOSC3|processed_transcript|CODING|ENST00000482614||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:0:0:0:34,34:1,1:0,0:0,0	57:0:0:0:53,53:0,0:4,4:0,0
9	37862020	.	A	G	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||DCAF10|processed_transcript|CODING|ENST00000461549||1),DOWNSTREAM(MODIFIER|||||DCAF10|processed_transcript|CODING|ENST00000478453||1),EXON(MODIFIER|||||DCAF10|processed_transcript|CODING|ENST00000483167|3|1),INTRON(MODIFIER|||||RP11-613M10.9|nonsense_mediated_decay|NON_CODING|ENST00000540557|7|1),UTR_3_PRIME(MODIFIER||||522|DCAF10|protein_coding|CODING|ENST00000242323|6|1),UTR_3_PRIME(MODIFIER||||559|DCAF10|protein_coding|CODING|ENST00000377724|7|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	42:1:0:0:41,41:0,0:0,0:0,0	65:0:0:0:57,57:1,1:7,7:0,0
9	38541181	.	C	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||ANKRD18A|processed_transcript|CODING|ENST00000357072||1),DOWNSTREAM(MODIFIER|||||ANKRD18A|processed_transcript|CODING|ENST00000566538||1),DOWNSTREAM(MODIFIER|||||ANKRD18A|processed_transcript|CODING|ENST00000567428||1),DOWNSTREAM(MODIFIER|||||RP11-392E22.5|processed_pseudogene|NON_CODING|ENST00000504791||1),DOWNSTREAM(MODIFIER|||||RP11-392E22.8|processed_pseudogene|NON_CODING|ENST00000564800||1),INTRON(MODIFIER|||||ANKRD18A|processed_transcript|CODING|ENST00000562942|2|1),UTR_3_PRIME(MODIFIER||||205|ANKRD18A|protein_coding|CODING|ENST00000313339|8|1),UTR_3_PRIME(MODIFIER|||||ANKRD18A|nonsense_mediated_decay|CODING|ENST00000566717|8|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:0:0:0:0,0:33,33:0,0:0,0	87:0:0:0:6,11:81,81:0,0:0,0
9	38541189	.	G	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||ANKRD18A|processed_transcript|CODING|ENST00000357072||1),DOWNSTREAM(MODIFIER|||||ANKRD18A|processed_transcript|CODING|ENST00000566538||1),DOWNSTREAM(MODIFIER|||||ANKRD18A|processed_transcript|CODING|ENST00000567428||1),DOWNSTREAM(MODIFIER|||||RP11-392E22.5|processed_pseudogene|NON_CODING|ENST00000504791||1),DOWNSTREAM(MODIFIER|||||RP11-392E22.8|processed_pseudogene|NON_CODING|ENST00000564800||1),INTRON(MODIFIER|||||ANKRD18A|processed_transcript|CODING|ENST00000562942|2|1),UTR_3_PRIME(MODIFIER||||205|ANKRD18A|protein_coding|CODING|ENST00000313339|8|1),UTR_3_PRIME(MODIFIER|||||ANKRD18A|nonsense_mediated_decay|CODING|ENST00000566717|8|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:0:0:0:0,0:0,0:35,35:0,0	90:0:0:0:5,10:0,0:85,85:0,0
9	40794047	.	G	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||ZNF658|nonsense_mediated_decay|CODING|ENST00000479710|1|1),UPSTREAM(MODIFIER||||1059|ZNF658|protein_coding|CODING|ENST00000377626||1),UPSTREAM(MODIFIER||||615|ZNF658|protein_coding|CODING|ENST00000441795||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	19:0:0:0:0,0:0,0:19,19:0,0	31:0:0:0:6,8:0,0:25,27:0,0
9	40828474	.	C	T	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||ZNF658|nonsense_mediated_decay|CODING|ENST00000479710|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	19:1:0:0:0,1:18,18:0,0:0,0	55:0:0:0:0,0:43,46:0,0:12,16
9	41684602	.	C	G	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	18:0:0:0:0,0:18,19:0,0:0,0	61:0:0:0:0,0:47,48:12,16:2,2
9	42450262	rs200641096	A	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=AA->AT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=42450262;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	79:1:0:0:77,110:0,0:0,0:1,2	147:1:0:0:138,187:0,0:0,0:8,11
9	44215174	.	G	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:0:0:0:0,1:0,0:36,36:0,0	79:0:0:0:7,8:0,0:72,72:0,0
9	44764257	.	T	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:2:0:0:0,0:0,0:0,1:28,37	58:0:0:0:0,0:7,7:0,0:51,57
9	44854330	.	G	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=DOWNSTREAM(MODIFIER|||||Y_RNA|misc_RNA|NON_CODING|ENST00000459194||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	25:0:0:0:0,2:0,0:25,26:0,0	71:3:0:0:16,21:0,0:52,53:0,0
9	45366256	.	T	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=DOWNSTREAM(MODIFIER|||||CDK2AP2P1|processed_pseudogene|NON_CODING|ENST00000492018||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:1:0:0:0,0:0,2:0,0:29,38	61:4:0:0:0,0:7,16:0,0:50,67
9	45375528	.	A	G	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||MYO5BP1|processed_pseudogene|NON_CODING|ENST00000437055||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	44:0:0:0:43,71:1,1:0,2:0,0	124:1:0:0:116,155:0,0:7,9:0,0
9	45379587	.	G	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->CG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=DOWNSTREAM(MODIFIER|||||MYO5BP1|processed_pseudogene|NON_CODING|ENST00000437055||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:1:0:0:0,0:0,1:35,41:0,0	106:4:0:0:0,0:6,8:96,105:0,1
9	45770372	.	G	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	47:1:0:0:0,1:0,0:46,50:0,0	82:0:0:0:7,8:0,0:75,76:0,0
9	46282010	.	A	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=AA->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	27:1:0:0:26,30:0,0:0,1:0,0	51:0:0:0:42,47:1,1:8,11:0,0
9	66261944	.	G	C	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	43:0:0:0:0,0:0,0:43,46:0,0	87:2:0:0:0,0:6,7:79,82:0,0
9	66261959	.	A	G	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	44:1:0:0:43,46:0,0:0,0:0,0	94:2:0:0:84,86:2,2:6,8:0,0
9	66492468	.	T	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->AT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=DOWNSTREAM(MODIFIER|||||RP11-262H14.5|processed_pseudogene|NON_CODING|ENST00000417533||1),INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||RP11-262H14.6|processed_pseudogene|NON_CODING|ENST00000436055||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	89:0:0:0:1,3:0,0:0,1:88,100	169:3:0:0:8,13:0,0:0,0:158,192
9	66507477	.	G	A	.	PASS	NT=ref;QSS=33;QSS_NT=33;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	73:1:0:0:0,3:0,1:72,98:0,0	212:5:0:0:10,18:1,2:196,267:0,0
9	66507479	.	A	G	.	PASS	NT=ref;QSS=36;QSS_NT=36;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	76:1:0:0:75,101:0,1:0,2:0,0	214:5:0:0:199,268:0,0:10,18:0,0
9	66762006	rs199852367	G	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||RP11-318K12.2|lincRNA|NON_CODING|ENST00000439342||1),DOWNSTREAM(MODIFIER|||||RP11-318K12.2|lincRNA|NON_CODING|ENST00000446288||1),INTERGENIC(MODIFIER||||||||||1);RSPOS=66762006;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:0:0:0:0,0:0,0:31,32:0,0	70:0:0:0:7,11:0,0:63,64:0,0
9	66769743	.	G	C	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	47:3:0:0:0,0:0,1:42,57:2,2	98:0:0:0:0,0:12,16:85,107:1,2
9	66769749	.	A	G	.	PASS	NT=ref;QSS=24;QSS_NT=24;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	49:3:0:0:46,60:0,0:0,2:0,0	97:0:0:0:86,106:0,0:11,17:0,0
9	66797044	.	A	T	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	46:2:0:0:43,48:1,1:0,0:0,0	146:2:0:0:138,144:0,0:0,0:6,6
9	66797053	.	A	T	.	PASS	NT=ref;QSS=24;QSS_NT=24;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	50:2:0:0:48,52:0,2:0,0:0,0	149:4:0:0:137,147:2,3:0,0:6,6
9	66819192	rs150131581	T	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=66819192;dbSNPBuildID=134;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:0:0:0:0,1:0,4:1,1:36,45	70:3:0:0:0,0:0,5:7,17:60,97
9	66851581	.	A	G	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=AA->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	70:3:0:0:67,77:0,1:0,2:0,1	186:8:0:0:170,196:2,4:6,8:0,1
9	66857776	.	T	C	.	PASS	NT=ref;QSS=38;QSS_NT=38;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||AL353626.1|miRNA|NON_CODING|ENST00000459322||1),DOWNSTREAM(MODIFIER|||||AL353626.2|miRNA|NON_CODING|ENST00000578257||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	83:4:0:0:0,0:0,0:0,0:79,114	157:7:0:0:0,0:10,13:0,0:140,194
9	67046863	.	C	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=EXON(MODIFIER|||||AQP7P4|unprocessed_pseudogene|NON_CODING|ENST00000322309|2|1),EXON(MODIFIER|||||AQP7P4|unprocessed_pseudogene|NON_CODING|ENST00000447083|4|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	14:0:0:0:0,0:14,18:0,0:0,0	53:0:0:0:0,0:42,47:0,0:11,13
9	67068028	.	C	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	15:0:0:0:0,0:15,16:0,0:0,0	40:1:0:0:0,0:30,33:0,0:9,9
9	67311698	rs28727915	C	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=67311698;dbSNPBuildID=125;SSR=0;SAO=0;VP=050000000001000102000100;WGT=1;VC=SNV;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:1:0:0:0,0:30,35:0,0:0,0	75:1:0:0:7,7:67,72:0,0:0,0
9	67311721	rs28429482	A	G	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=67311721;dbSNPBuildID=125;SSR=0;SAO=0;VP=050000000001000102000100;WGT=1;VC=SNV;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:1:0:0:31,36:0,0:0,0:0,0	78:0:0:0:70,75:0,0:8,8:0,0
9	67896921	rs28555381	C	A	.	PASS	NT=ref;QSS=30;QSS_NT=30;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=67896921;dbSNPBuildID=125;SSR=0;SAO=0;VP=050000000001000102000100;WGT=1;VC=SNV;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:2:0:0:0,0:29,31:0,0:0,1	61:3:0:0:17,18:41,44:0,0:0,0
9	67961544	.	C	T	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||823|ANKRD20A1|protein_coding|CODING|ENST00000377477|12|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	42:0:0:0:0,0:41,45:1,1:0,0	114:0:0:0:0,0:102,111:0,0:12,16
9	68343229	rs9987821	C	T	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||RP11-149F8.5|processed_transcript|NON_CODING|ENST00000431077||1),INTERGENIC(MODIFIER||||||||||1);RSPOS=68343229;dbSNPBuildID=119;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:1:0:0:0,0:36,38:0,0:0,2	77:1:0:0:0,0:66,66:0,0:10,19
9	68410077	.	C	A	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=CC->AC;SOMATIC;TQSS=2;TQSS_NT=2;EFF=DOWNSTREAM(MODIFIER|||||RNA5SP284|rRNA|NON_CODING|ENST00000384547||1),DOWNSTREAM(MODIFIER|||||RP11-764K9.2|processed_pseudogene|NON_CODING|ENST00000455245||1),DOWNSTREAM(MODIFIER|||||RP11-764K9.3|processed_pseudogene|NON_CODING|ENST00000437749||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	76:11:0:0:0,1:65,101:0,1:0,0	149:6:0:0:6,8:137,185:0,1:0,0
9	68423020	rs138083572	C	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||RP11-764K9.4|unprocessed_pseudogene|NON_CODING|ENST00000376334||1),INTERGENIC(MODIFIER||||||||||1);RSPOS=68423020;GMAF=0.0114;dbSNPBuildID=134;SSR=0;SAO=0;VP=050000000005000016000100;WGT=1;VC=SNV;ASP;KGPhase1;KGPROD;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	85:1:0:0:0,0:83,98:0,0:1,1	141:0:0:0:0,0:133,159:1,1:7,10
9	68439152	.	G	A	.	PASS	NT=ref;QSS=25;QSS_NT=25;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-764K9.4|unprocessed_pseudogene|NON_CODING|ENST00000376334|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	51:1:0:0:0,0:0,0:50,71:0,0	122:2:0:0:8,10:0,0:112,146:0,0
9	68452888	.	A	G	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-764K9.4|unprocessed_pseudogene|NON_CODING|ENST00000376334|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	66:1:0:0:65,79:0,0:0,1:0,0	152:1:0:0:143,171:0,0:8,14:0,0
9	68459141	.	C	G	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->CG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||RP11-764K9.4|unprocessed_pseudogene|NON_CODING|ENST00000376334||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:1:0:0:0,0:36,38:0,1:0,0	73:3:0:0:0,0:63,65:6,10:1,2
9	68459159	.	A	G	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=AA->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||RP11-764K9.4|unprocessed_pseudogene|NON_CODING|ENST00000376334||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:2:0:0:35,38:0,0:0,2:0,0	78:2:0:0:66,68:1,2:9,14:0,0
9	68465995	rs113680193	C	G	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=68465995;dbSNPBuildID=132;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	48:1:0:0:0,0:46,52:0,1:1,1	122:2:0:0:0,0:107,125:12,17:1,1
9	68466036	rs200443012	C	T	.	PASS	NT=ref;QSS=24;QSS_NT=24;SGT=CC->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=68466036;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	55:1:0:0:0,0:54,65:0,0:0,1	135:11:0:0:0,0:110,156:0,0:14,18
9	68466046	.	C	A	.	PASS	NT=ref;QSS=25;QSS_NT=25;SGT=CC->AC;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	56:3:0:0:0,1:53,66:0,0:0,0	133:12:0:0:14,18:107,154:0,0:0,0
9	68466064	.	T	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=TT->AT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	60:1:0:0:0,1:0,0:0,0:59,70	130:1:0:0:8,12:0,0:0,0:121,157
9	68466073	rs113953877	T	A	.	PASS	NT=ref;QSS=42;QSS_NT=42;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=68466073;dbSNPBuildID=132;SSR=0;SAO=0;VP=050000000001000002000100;WGT=1;VC=SNV;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	59:0:0:0:0,1:0,0:0,0:59,69	132:0:0:0:23,30:0,0:0,0:109,141
9	68466458	rs146374852	C	G	.	PASS	NT=ref;QSS=24;QSS_NT=24;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=68466458;dbSNPBuildID=134;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	52:0:0:0:0,0:52,55:0,1:0,0	69:1:0:0:0,0:61,65:6,8:1,1
9	68466506	rs149783257	C	T	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=68466506;dbSNPBuildID=134;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	60:0:0:0:0,0:60,61:0,0:0,1	78:0:0:0:0,0:72,75:0,0:6,8
9	68479929	.	A	C	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:0:0:0:28,34:1,1:0,0:0,0	47:1:0:0:36,41:10,10:0,0:0,0
9	68489670	rs143317289	C	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=68489670;dbSNPBuildID=134;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	55:1:0:0:0,0:53,57:0,0:1,1	146:1:0:0:0,0:138,140:0,0:7,9
9	68697004	.	G	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	23:1:0:0:0,0:0,0:22,37:0,0	46:0:0:0:0,0:7,11:39,60:0,0
9	68702544	.	T	G	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:0:0:0:0,0:0,0:0,0:33,34	76:0:0:0:0,0:0,0:9,9:67,76
9	68702571	.	C	A	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:3:0:0:0,0:33,38:0,0:0,1	77:1:0:0:9,10:67,79:0,1:0,0
9	68702590	.	A	T	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:0:0:0:39,44:0,0:0,0:0,0	74:1:0:0:66,77:0,1:0,0:7,9
9	68709439	.	G	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	54:0:0:0:0,0:2,2:52,59:0,0	122:1:0:0:0,0:0,0:112,132:9,16
9	68744080	rs199779837	A	G	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||PGM5P1|unprocessed_pseudogene|NON_CODING|ENST00000510760|8|1),INTRON(MODIFIER|||||RP11-391M20.1|unprocessed_pseudogene|NON_CODING|ENST00000427066|4|1);RSPOS=68744080;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000080005000002000100;WGT=1;VC=SNV;INT;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	74:1:0:0:73,89:0,0:0,1:0,0	164:3:0:0:155,188:0,3:6,11:0,1
9	69045798	.	G	T	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=GG->GT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	55:6:0:0:0,0:0,0:49,72:0,0	105:5:0:0:0,0:0,0:93,126:7,9
9	69134843	.	A	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||PGM5P2|processed_transcript|NON_CODING|ENST00000591037|1|1),INTRON(MODIFIER|||||PGM5P2|transcribed_unprocessed_pseudogene|NON_CODING|ENST00000426020|1|1),INTRON(MODIFIER|||||PGM5P2|unprocessed_pseudogene|NON_CODING|ENST00000272546|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:1:0:0:34,37:0,0:0,0:0,0	66:0:0:0:60,62:5,8:1,1:0,0
9	69645228	.	C	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||AQP7P2|unprocessed_pseudogene|NON_CODING|ENST00000453967|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	27:2:0:0:0,0:25,32:0,0:0,2	55:1:0:0:0,0:47,75:0,0:7,16
9	69690396	.	C	G	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	52:2:0:0:0,0:49,61:0,0:1,1	122:2:0:0:0,0:112,137:8,9:0,0
9	69691833	rs201875969	A	T	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=69691833;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:10:0:0:23,49:0,0:0,1:0,0	54:21:0:0:27,85:0,0:0,1:6,7
9	69821034	.	G	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=DOWNSTREAM(MODIFIER|||||AL359955.1|miRNA|NON_CODING|ENST00000458761||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	57:9:0:0:1,3:0,0:47,59:0,0	142:7:0:0:10,11:0,0:125,136:0,1
9	69821186	.	G	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->CG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=DOWNSTREAM(MODIFIER|||||AL359955.1|miRNA|NON_CODING|ENST00000458761||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	74:2:0:0:0,0:0,2:72,85:0,0	176:3:0:0:0,0:9,21:163,173:1,1
9	69821204	.	C	T	.	PASS	NT=ref;QSS=28;QSS_NT=28;SGT=CC->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=DOWNSTREAM(MODIFIER|||||AL359955.1|miRNA|NON_CODING|ENST00000458761||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	76:2:0:0:0,0:74,88:0,0:0,1	165:1:0:0:0,0:157,167:0,0:7,17
9	69957497	.	T	C	.	PASS	NT=ref;QSS=27;QSS_NT=27;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	82:26:0:0:2,4:0,5:0,0:54,184	183:45:0:0:3,7:11,31:0,1:124,396
9	69970088	.	G	C	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=GG->CG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	62:0:0:0:0,0:0,0:62,92:0,0	186:1:2:0:1,2:8,12:176,239:0,1
9	69970096	.	C	A	.	PASS	NT=ref;QSS=29;QSS_NT=29;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	62:1:0:0:0,0:60,89:0,0:1,1	187:1:0:0:9,13:177,242:0,0:0,0
9	70002252	.	C	G	.	PASS	NT=ref;QSS=23;QSS_NT=23;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	52:6:0:0:0,0:46,208:0,4:0,0	107:10:0:0:0,0:91,492:6,22:0,0
9	70002257	.	T	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	53:5:0:0:0,1:0,4:0,0:48,205	105:7:0:0:0,1:5,22:0,0:93,488
9	70494660	rs199767500	T	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER|||||CBWD5|processed_transcript|CODING|ENST00000441808|1|1),UPSTREAM(MODIFIER||||113|CBWD5|protein_coding|CODING|ENST00000377384||1),UPSTREAM(MODIFIER||||347|CBWD5|protein_coding|CODING|ENST00000377395||1),UPSTREAM(MODIFIER||||375|CBWD5|protein_coding|CODING|ENST00000429800||1),UPSTREAM(MODIFIER||||376|CBWD5|protein_coding|CODING|ENST00000430059||1),UPSTREAM(MODIFIER||||395|CBWD5|protein_coding|CODING|ENST00000382405||1),UPSTREAM(MODIFIER|||||CBWD5|nonsense_mediated_decay|CODING|ENST00000377389||1),UPSTREAM(MODIFIER|||||CBWD5|nonsense_mediated_decay|CODING|ENST00000465474||1),UPSTREAM(MODIFIER|||||CBWD5|nonsense_mediated_decay|CODING|ENST00000469921||1),UPSTREAM(MODIFIER|||||CBWD5|nonsense_mediated_decay|CODING|ENST00000476161||1),UPSTREAM(MODIFIER|||||CBWD5|nonsense_mediated_decay|CODING|ENST00000480229||1),UPSTREAM(MODIFIER|||||CBWD5|nonsense_mediated_decay|CODING|ENST00000486221||1),UPSTREAM(MODIFIER|||||CBWD5|nonsense_mediated_decay|CODING|ENST00000497250||1),UPSTREAM(MODIFIER|||||CBWD5|processed_transcript|CODING|ENST00000464913||1),UPSTREAM(MODIFIER|||||CBWD5|retained_intron|CODING|ENST00000377380||1),UPSTREAM(MODIFIER|||||CBWD5|retained_intron|CODING|ENST00000382404||1),UPSTREAM(MODIFIER|||||CBWD5|retained_intron|CODING|ENST00000486466||1);RSPOS=70494660;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	46:0:0:0:0,0:0,1:0,0:46,48	95:4:0:0:0,1:8,10:0,0:83,88
9	70506043	.	G	A	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:1:0:0:0,0:0,0:37,52:0,0	119:0:0:0:7,12:0,0:112,129:0,0
9	70651966	.	G	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:2:0:0:0,0:0,0:36,42:0,0	105:7:0:0:0,0:8,12:90,104:0,0
9	70938829	.	T	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||RP11-561O23.5|lincRNA|NON_CODING|ENST00000414223||1),UPSTREAM(MODIFIER|||||RP11-561O23.5|lincRNA|NON_CODING|ENST00000429953||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:0:0:0:0,0:0,0:2,3:27,31	40:1:0:0:1,1:4,5:2,4:32,34
9	71252711	rs144749335	C	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||RP11-274B18.4|processed_transcript|NON_CODING|ENST00000413269||1),INTERGENIC(MODIFIER||||||||||1);RSPOS=71252711;GMAF=0.0009;dbSNPBuildID=134;SSR=0;SAO=0;VP=050000000005000014000100;WGT=1;VC=SNV;ASP;KGPhase1;KGPROD	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:0:0:0:0,0:33,33:0,0:0,0	73:1:0:0:0,0:66,67:1,1:5,5
9	72200043	.	G	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||837|APBA1|protein_coding|CODING|ENST00000265381|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:0:0:0:0,0:0,0:34,34:0,0	89:2:0:0:0,0:0,0:79,80:8,9
9	73817105	.	A	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1711|TRPM3|protein_coding|CODING|ENST00000357533|1|1),INTRON(MODIFIER||||1734|TRPM3|protein_coding|CODING|ENST00000423814|1|1),INTRON(MODIFIER|||||TRPM3|retained_intron|CODING|ENST00000354500|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:0:0:0:31,31:0,0:0,0:0,0	74:2:0:0:66,67:0,0:6,7:0,0
9	75439495	.	C	T	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||760|TMC1|protein_coding|CODING|ENST00000297784|20|1),INTRON(MODIFIER||||760|TMC1|protein_coding|CODING|ENST00000340019|19|1),INTRON(MODIFIER||||760|TMC1|protein_coding|CODING|ENST00000396237|16|1),INTRON(MODIFIER|||||TMC1|processed_transcript|CODING|ENST00000469455|3|1),INTRON(MODIFIER|||||TMC1|processed_transcript|CODING|ENST00000486417|7|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	44:0:0:0:1,1:42,42:1,1:0,0	58:1:0:0:0,0:51,53:0,0:6,6
9	75465946	.	A	G	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:2:0:0:34,35:0,0:1,2:0,0	64:3:0:0:49,52:1,1:11,13:0,0
9	76427623	.	A	T	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:1:0:0:36,37:0,0:0,0:0,0	67:0:0:0:62,62:0,0:0,0:5,5
9	77005772	.	T	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:0:0:0:0,0:0,0:0,0:33,33	78:0:0:0:4,4:0,0:0,0:74,74
9	77518856	.	C	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	27:2:0:0:0,0:25,26:0,0:0,0	85:2:0:0:0,0:73,78:0,0:10,10
9	77518869	.	C	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:2:0:0:0,0:29,31:0,0:0,0	88:3:0:0:0,0:78,84:0,0:7,8
9	77919384	.	C	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	28:0:0:0:0,0:28,28:0,0:0,0	63:1:0:0:0,0:58,59:4,4:0,0
9	78595676	rs111865836	T	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER||||1860|PCSK5|protein_coding|CODING|ENST00000545128|2|1),INTRON(MODIFIER||||690|PCSK5|protein_coding|CODING|ENST00000376767|2|1),INTRON(MODIFIER||||913|PCSK5|protein_coding|CODING|ENST00000376752|2|1);RSPOS=78595676;dbSNPBuildID=132;SSR=0;SAO=0;VP=050000080005000102000100;GENEINFO=PCSK5:5125;WGT=1;VC=SNV;INT;ASP;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:1:0:0:0,0:0,0:0,0:28,28	66:3:0:0:0,0:6,6:0,0:57,60
9	78790151	.	T	C	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=TT->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER||||1560|PCSK5|protein_coding|CODING|ENST00000424854|7|1),INTRON(MODIFIER||||1860|PCSK5|protein_coding|CODING|ENST00000545128|14|1),INTRON(MODIFIER||||913|PCSK5|protein_coding|CODING|ENST00000376752|14|1),NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|aTg/aCg|M669T|690|PCSK5|protein_coding|CODING|ENST00000376767|14|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:14:23:0:0,2:0,18:0,2:23,314	134:28:55:0:5,10:17,66:2,5:82,719
9	78986335	.	T	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:0:0:0:0,0:0,0:1,1:39,40	68:1:0:0:0,0:4,4:1,2:62,63
9	78986338	rs192288470	T	G	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=78986338;GMAF=0.0037;dbSNPBuildID=135;SSR=0;SAO=0;VP=050000000005000014000100;WGT=1;VC=SNV;ASP;KGPhase1;KGPROD	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:0:0:0:0,0:0,0:0,0:40,41	68:1:0:0:0,0:0,0:7,7:60,62
9	79628261	.	C	G	.	PASS	NT=ref;QSS=24;QSS_NT=24;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	48:0:0:0:1,1:47,47:0,0:0,0	78:0:0:0:0,0:69,69:8,8:1,1
9	81301914	.	G	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:2:0:0:0,0:0,0:28,31:0,0	60:0:0:0:5,5:0,0:55,55:0,0
9	82006328	.	C	T	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=EXON(MODIFIER|||||CHCHD2P9|processed_pseudogene|NON_CODING|ENST00000461726|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:0:0:0:0,0:39,39:1,1:0,0	77:0:0:0:0,0:73,73:0,0:4,4
9	83227642	.	G	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:0:0:0:0,0:0,0:29,32:0,0	62:0:0:0:7,9:0,0:55,63:0,0
9	83227675	rs200991886	A	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=83227675;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:1:0:0:31,35:0,0:0,0:0,0	54:0:0:0:48,56:0,1:0,0:6,8
9	83270770	.	G	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	23:0:0:0:0,0:0,0:23,28:0,0	41:0:0:0:7,7:0,0:34,37:0,0
9	84755789	.	T	C	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:1:0:0:0,0:0,0:1,1:35,37	68:2:0:0:0,1:6,7:0,0:60,61
9	85339583	.	T	C	.	PASS	NT=ref;QSS=24;QSS_NT=24;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	47:0:0:0:0,0:0,0:0,0:47,47	70:0:0:0:0,0:6,6:0,0:64,64
9	85363602	rs113951986	G	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||RP11-22C13.1|processed_pseudogene|NON_CODING|ENST00000432491||1);RSPOS=85363602;dbSNPBuildID=132;SSR=0;SAO=0;VP=050000000015000002000100;WGT=1;VC=SNV;OTH;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	17:0:7:0:0,0:0,0:17,17:0,0	45:0:23:0:11,11:1,1:33,33:0,0
9	85429915	.	G	T	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:0:0:0:0,0:1,1:38,38:0,0	71:1:0:0:0,0:0,0:65,66:5,5
9	85641736	.	T	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||740|RASEF|protein_coding|CODING|ENST00000376447|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:0:0:0:0,0:0,0:1,1:31,31	91:1:0:0:0,0:7,7:0,0:83,84
9	85707997	.	C	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	26:0:0:0:0,0:26,26:0,0:0,0	65:2:0:0:0,0:57,59:0,1:6,6
9	86182449	.	T	C	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	41:0:0:0:0,0:0,0:0,0:41,41	63:0:0:0:0,0:5,5:0,0:58,58
9	87141244	.	T	C	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	42:7:0:0:0,0:0,1:0,1:35,43	91:5:0:0:0,0:7,9:0,0:79,84
9	87764627	.	A	G	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:0:0:0:34,34:0,0:0,0:0,0	68:1:0:0:63,64:0,0:4,4:0,0
9	88386586	rs74596839	G	T	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-213G2.1|unprocessed_pseudogene|NON_CODING|ENST00000422653|4|1),UPSTREAM(MODIFIER|||||RP11-213G2.1|unprocessed_pseudogene|NON_CODING|ENST00000418135||1);RSPOS=88386586;dbSNPBuildID=131;SSR=0;SAO=0;VP=050000000001000102000100;WGT=1;VC=SNV;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	25:1:0:0:0,0:0,0:24,25:0,0	56:0:0:0:0,0:0,0:45,45:11,11
9	88484546	.	G	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:0:0:0:0,0:0,0:29,29:0,0	78:2:0:0:4,5:0,0:72,76:0,0
9	88729551	.	A	G	.	PASS	NT=ref;QSS=24;QSS_NT=24;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	46:0:0:0:46,46:0,0:0,0:0,0	65:1:0:0:58,60:0,0:6,6:0,0
9	89203090	.	G	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:2:0:0:0,1:0,0:29,40:0,0	62:5:0:0:5,7:0,0:52,71:0,0
9	89203093	.	G	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:2:0:0:0,1:0,0:28,39:1,1	60:6:0:0:5,7:0,0:49,67:0,1
9	89713914	.	C	T	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	41:0:0:0:0,0:41,41:0,0:0,0	73:3:0:0:0,2:64,65:0,0:6,6
9	90472702	.	G	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=EXON(MODIFIER|||||XXyac-YM21GA2.7|antisense|NON_CODING|ENST00000399186|2|1),UPSTREAM(MODIFIER|||||XXyac-YM21GA2.3|antisense|NON_CODING|ENST00000411992||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:3:0:0:0,0:0,0:29,33:0,0	78:6:0:0:0,0:0,1:64,69:8,8
9	90484730	.	C	A	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||XXyac-YM21GA2.4|lincRNA|NON_CODING|ENST00000447524||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	50:2:0:0:0,1:48,62:0,0:0,0	109:7:2:0:6,9:96,140:0,0:0,0
9	91001224	.	G	C	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER||||262|SPIN1|protein_coding|CODING|ENST00000375859||1),UPSTREAM(MODIFIER||||262|SPIN1|protein_coding|CODING|ENST00000541629||1),UPSTREAM(MODIFIER|||||SPIN1|processed_transcript|CODING|ENST00000462844||1),UPSTREAM(MODIFIER|||||SPIN1|processed_transcript|CODING|ENST00000483785||1),UPSTREAM(MODIFIER|||||SPIN1|processed_transcript|CODING|ENST00000485565||1),UPSTREAM(MODIFIER|||||SPIN1|processed_transcript|CODING|ENST00000485804||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:0:0:0:0,0:0,0:35,35:0,0	59:1:0:0:0,0:5,6:53,55:0,0
9	91771246	.	C	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||105|SHC3|protein_coding|CODING|ENST00000375830|1|1),INTRON(MODIFIER||||594|SHC3|protein_coding|CODING|ENST00000375835|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:0:0:0:0,0:33,33:0,0:0,0	66:0:0:0:1,1:61,61:0,0:4,4
9	92497828	.	C	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||RP5-1050E16.2|lincRNA|NON_CODING|ENST00000421297||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	25:0:0:0:0,0:25,25:0,0:0,0	74:0:0:0:0,0:65,66:0,0:9,9
9	92825505	.	G	A	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:1:0:0:0,0:0,0:38,39:0,0	83:0:0:0:4,4:0,0:79,79:0,0
9	93367147	.	G	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||199|DIRAS2|protein_coding|CODING|ENST00000375765||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:0:0:0:1,1:0,0:29,29:0,0	76:2:0:0:1,1:0,0:68,70:5,5
9	93408859	.	T	C	.	PASS	NT=ref;QSS=23;QSS_NT=23;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER||||199|DIRAS2|protein_coding|CODING|ENST00000375765||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	46:0:0:0:0,0:0,0:0,0:46,46	72:1:0:0:0,0:5,5:1,1:65,66
9	93537198	.	C	T	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:1:0:0:0,0:39,40:0,0:0,0	70:0:0:0:0,0:63,63:0,0:7,7
9	93875699	.	C	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:0:0:0:0,0:29,29:0,0:0,0	84:0:0:0:0,0:79,79:0,0:5,5
9	94207306	.	G	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:0:0:0:0,0:0,0:29,29:0,0	84:0:0:0:0,0:0,0:79,79:5,5
9	95807325	.	G	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:0:0:0:0,0:0,0:31,31:0,0	70:1:0:0:5,5:0,0:63,65:1,1
9	98336834	.	A	G	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	19:2:0:0:17,23:0,0:0,0:0,0	51:8:0:0:33,41:1,2:9,15:0,0
9	99588402	.	T	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=TT->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER||||204|ZNF782|protein_coding|CODING|ENST00000478850|4|1),INTRON(MODIFIER||||567|ZNF782|protein_coding|CODING|ENST00000535338|2|1),INTRON(MODIFIER||||699|ZNF782|protein_coding|CODING|ENST00000481138|5|1),INTRON(MODIFIER|||||ZNF782|processed_transcript|CODING|ENST00000466833|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	44:0:0:0:0,0:0,0:0,0:44,44	71:1:0:0:0,0:7,8:0,0:63,68
9	99984398	.	T	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||ANKRD18CP|processed_transcript|NON_CODING|ENST00000354752||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:2:0:0:0,0:1,1:0,0:36,40	84:5:0:0:0,0:6,7:0,0:73,81
9	104028446	.	C	A	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||102|RP11-35N6.1|protein_coding|CODING|ENST00000456287|2|1),INTRON(MODIFIER||||325|RP11-35N6.1|protein_coding|CODING|ENST00000374871|2|1),INTRON(MODIFIER||||325|RP11-35N6.1|protein_coding|CODING|ENST00000374874|2|1),INTRON(MODIFIER||||325|RP11-35N6.1|protein_coding|CODING|ENST00000395056|2|1),UPSTREAM(MODIFIER|||||RP11-35N6.1|processed_transcript|CODING|ENST00000463206||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:2:0:0:0,0:38,40:0,0:0,0	77:1:0:0:5,6:71,71:0,0:0,0
9	104028460	.	A	G	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||102|RP11-35N6.1|protein_coding|CODING|ENST00000456287|2|1),INTRON(MODIFIER||||325|RP11-35N6.1|protein_coding|CODING|ENST00000374871|2|1),INTRON(MODIFIER||||325|RP11-35N6.1|protein_coding|CODING|ENST00000374874|2|1),INTRON(MODIFIER||||325|RP11-35N6.1|protein_coding|CODING|ENST00000395056|2|1),UPSTREAM(MODIFIER|||||RP11-35N6.1|processed_transcript|CODING|ENST00000463206||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:2:0:0:35,37:2,2:0,0:0,0	83:0:0:0:76,76:1,1:6,6:0,0
9	105142483	.	G	A	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	45:0:0:0:0,0:0,0:44,44:1,1	76:0:0:0:6,6:0,0:70,71:0,0
9	105361662	.	T	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||LINC00587|lincRNA|NON_CODING|ENST00000374801|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:1:0:0:0,0:0,0:0,0:30,31	78:2:0:0:0,0:4,4:0,0:72,74
9	106614280	rs192623262	G	A	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=106614280;GMAF=0.0806;dbSNPBuildID=135;SSR=0;SAO=0;VP=050000000005000014000100;WGT=1;VC=SNV;ASP;KGPhase1;KGPROD	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	21:1:0:0:0,0:0,1:20,22:0,0	58:2:1:0:12,13:0,1:44,44:0,0
9	106888006	.	T	G	.	PASS	NT=ref;QSS=26;QSS_NT=26;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1099|SMC2|protein_coding|CODING|ENST00000303219|18|1),INTRON(MODIFIER||||1197|SMC2|protein_coding|CODING|ENST00000286398|18|1),INTRON(MODIFIER||||1197|SMC2|protein_coding|CODING|ENST00000374787|18|1),INTRON(MODIFIER||||1197|SMC2|protein_coding|CODING|ENST00000374793|18|1),UPSTREAM(MODIFIER|||||SMC2|nonsense_mediated_decay|CODING|ENST00000493955||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	54:1:0:0:0,0:0,0:0,0:53,54	79:1:0:0:0,1:0,0:6,6:72,72
9	108585257	.	T	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:4:0:0:0,0:0,1:0,0:29,33	67:1:0:0:0,0:12,12:1,1:53,54
9	109711244	.	C	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1412|ZNF462|protein_coding|CODING|ENST00000441147|5|1),INTRON(MODIFIER||||1449|ZNF462|protein_coding|CODING|ENST00000374686|5|1),INTRON(MODIFIER||||2506|ZNF462|protein_coding|CODING|ENST00000277225|7|1),INTRON(MODIFIER||||2566|ZNF462|protein_coding|CODING|ENST00000457913|7|1),INTRON(MODIFIER||||463|ZNF462|protein_coding|CODING|ENST00000542028|3|1),INTRON(MODIFIER|||||ZNF462|processed_transcript|CODING|ENST00000469433|2|1),INTRON(MODIFIER|||||ZNF462|processed_transcript|CODING|ENST00000479166|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:0:0:0:0,0:31,31:0,0:0,0	80:1:0:0:5,5:74,75:0,0:0,0
9	110267717	.	A	G	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	44:1:0:0:42,42:0,1:1,1:0,0	79:1:0:0:74,75:0,1:4,4:0,0
9	110267722	.	G	A	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	45:1:0:0:0,0:0,0:44,45:0,0	80:1:0:0:4,4:0,0:75,77:0,0
9	111010223	rs201479352	C	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||RP11-505C13.1|lincRNA|NON_CODING|ENST00000453455||1),INTERGENIC(MODIFIER||||||||||1);RSPOS=111010223;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:5:10:0:0,0:35,53:0,0:0,0	94:11:12:0:1,2:73,103:1,1:8,13
9	111764352	.	A	G	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||183|CTNNAL1|protein_coding|CODING|ENST00000374593|1|1),INTRON(MODIFIER||||650|CTNNAL1|protein_coding|CODING|ENST00000325580|1|1),INTRON(MODIFIER||||718|CTNNAL1|protein_coding|CODING|ENST00000374595|1|1),INTRON(MODIFIER||||734|CTNNAL1|protein_coding|CODING|ENST00000325551|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:0:0:0:34,34:0,0:0,0:0,0	82:1:0:0:77,78:0,0:4,4:0,0
9	111870908	.	T	G	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||879|TMEM245|protein_coding|CODING|ENST00000374586|1|1),UPSTREAM(MODIFIER|||||TMEM245|nonsense_mediated_decay|CODING|ENST00000491854||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:0:0:0:0,0:0,0:0,0:32,32	82:0:0:0:0,0:1,1:5,5:76,76
9	112859746	.	G	A	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1090|AKAP2|protein_coding|CODING|ENST00000510514|7|1),INTRON(MODIFIER||||1090|PALM2-AKAP2|protein_coding|CODING|ENST00000302798|7|1),INTRON(MODIFIER||||1103|AKAP2|protein_coding|CODING|ENST00000555236|7|1),INTRON(MODIFIER||||1103|PALM2-AKAP2|protein_coding|CODING|ENST00000374530|7|1),INTRON(MODIFIER||||432|PALM2-AKAP2|protein_coding|CODING|ENST00000413420|8|1),INTRON(MODIFIER||||777|AKAP2|protein_coding|CODING|ENST00000480388|1|1),INTRON(MODIFIER||||948|AKAP2|protein_coding|CODING|ENST00000374525|1|1),INTRON(MODIFIER||||961|AKAP2|protein_coding|CODING|ENST00000434623|1|1),INTRON(MODIFIER|||||AKAP2|nonsense_mediated_decay|CODING|ENST00000495980|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:1:0:0:0,0:1,1:37,39:0,0	89:1:0:0:6,8:0,0:82,94:0,0
9	112859798	rs144549345	G	A	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1090|AKAP2|protein_coding|CODING|ENST00000510514|7|1),INTRON(MODIFIER||||1090|PALM2-AKAP2|protein_coding|CODING|ENST00000302798|7|1),INTRON(MODIFIER||||1103|AKAP2|protein_coding|CODING|ENST00000555236|7|1),INTRON(MODIFIER||||1103|PALM2-AKAP2|protein_coding|CODING|ENST00000374530|7|1),INTRON(MODIFIER||||432|PALM2-AKAP2|protein_coding|CODING|ENST00000413420|8|1),INTRON(MODIFIER||||777|AKAP2|protein_coding|CODING|ENST00000480388|1|1),INTRON(MODIFIER||||948|AKAP2|protein_coding|CODING|ENST00000374525|1|1),INTRON(MODIFIER||||961|AKAP2|protein_coding|CODING|ENST00000434623|1|1),INTRON(MODIFIER|||||AKAP2|nonsense_mediated_decay|CODING|ENST00000495980|1|1);RSPOS=112859798;GMAF=0.0682;dbSNPBuildID=134;SSR=0;SAO=0;VP=050000080005000016000100;GENEINFO=PALM2-AKAP2:445815|AKAP2:11217;WGT=1;VC=SNV;INT;ASP;KGPhase1;KGPROD;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:1:0:0:0,0:0,0:38,39:1,1	83:2:0:0:9,12:0,0:72,77:0,0
9	112895105	.	T	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1090|AKAP2|protein_coding|CODING|ENST00000510514|7|1),INTRON(MODIFIER||||1090|PALM2-AKAP2|protein_coding|CODING|ENST00000302798|7|1),INTRON(MODIFIER||||1103|AKAP2|protein_coding|CODING|ENST00000555236|7|1),INTRON(MODIFIER||||1103|PALM2-AKAP2|protein_coding|CODING|ENST00000374530|7|1),INTRON(MODIFIER||||432|PALM2-AKAP2|protein_coding|CODING|ENST00000413420|8|1),INTRON(MODIFIER||||777|AKAP2|protein_coding|CODING|ENST00000480388|1|1),INTRON(MODIFIER||||859|AKAP2|protein_coding|CODING|ENST00000259318|1|1),INTRON(MODIFIER||||948|AKAP2|protein_coding|CODING|ENST00000374525|1|1),INTRON(MODIFIER||||961|AKAP2|protein_coding|CODING|ENST00000434623|1|1),INTRON(MODIFIER|||||AKAP2|nonsense_mediated_decay|CODING|ENST00000495980|1|1),INTRON(MODIFIER|||||AKAP2|processed_transcript|CODING|ENST00000471798|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:0:0:0:0,0:1,1:0,0:31,31	77:1:0:0:0,0:1,1:4,4:71,73
9	113717503	.	G	T	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||181|LPAR1|protein_coding|CODING|ENST00000441240|3|1),INTRON(MODIFIER||||364|LPAR1|protein_coding|CODING|ENST00000358883|2|1),INTRON(MODIFIER||||364|LPAR1|protein_coding|CODING|ENST00000374430|3|1),INTRON(MODIFIER||||364|LPAR1|protein_coding|CODING|ENST00000374431|3|1),INTRON(MODIFIER||||365|LPAR1|protein_coding|CODING|ENST00000538760|1|1),INTRON(MODIFIER||||365|LPAR1|protein_coding|CODING|ENST00000541779|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:1:0:0:0,0:0,1:37,37:0,0	60:0:0:0:0,0:0,0:54,54:6,6
9	114403696	.	T	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER||||153|DNAJC25-GNG10|protein_coding|CODING|ENST00000374294|1|1),INTRON(MODIFIER||||153|DNAJC25|protein_coding|CODING|ENST00000556107|1|1),INTRON(MODIFIER||||360|DNAJC25|protein_coding|CODING|ENST00000313525|1|1),INTRON(MODIFIER|||||DNAJC25|nonsense_mediated_decay|CODING|ENST00000447096|1|1),INTRON(MODIFIER|||||DNAJC25|nonsense_mediated_decay|CODING|ENST00000463589|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	42:2:0:0:0,0:0,4:1,1:39,53	56:8:0:0:1,2:12,19:2,5:33,47
9	115099568	.	C	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER||||181|PTBP3|protein_coding|CODING|ENST00000210227||1),UPSTREAM(MODIFIER||||457|PTBP3|protein_coding|CODING|ENST00000343327||1),UPSTREAM(MODIFIER||||524|PTBP3|protein_coding|CODING|ENST00000374257||1),UPSTREAM(MODIFIER||||552|PTBP3|protein_coding|CODING|ENST00000374255||1),UPSTREAM(MODIFIER||||555|PTBP3|protein_coding|CODING|ENST00000334318||1),UPSTREAM(MODIFIER||||558|PTBP3|protein_coding|CODING|ENST00000458258||1),UPSTREAM(MODIFIER||||76|PTBP3|protein_coding|CODING|ENST00000450374||1),UPSTREAM(MODIFIER|||||PTBP3|processed_transcript|CODING|ENST00000487997||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:0:0:0:0,0:30,30:0,0:0,0	79:0:0:0:7,7:72,72:0,0:0,0
9	116168977	.	A	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||147|POLE3|protein_coding|CODING|ENST00000374169||1),DOWNSTREAM(MODIFIER||||147|POLE3|protein_coding|CODING|ENST00000374171||1),DOWNSTREAM(MODIFIER|||||POLE3|processed_transcript|CODING|ENST00000475080||1),DOWNSTREAM(MODIFIER|||||POLE3|processed_transcript|CODING|ENST00000479871||1),INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER||||461|C9orf43|protein_coding|CODING|ENST00000288462||1),UPSTREAM(MODIFIER||||461|C9orf43|protein_coding|CODING|ENST00000374165||1),UPSTREAM(MODIFIER|||||C9orf43|processed_transcript|CODING|ENST00000490544||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	24:0:0:0:24,24:0,0:0,0:0,0	73:1:0:0:59,60:13,16:0,0:0,0
9	116825960	.	T	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||270|AMBP|protein_coding|CODING|ENST00000540645|6|1),INTRON(MODIFIER||||352|AMBP|protein_coding|CODING|ENST00000265132|6|1),INTRON(MODIFIER|||||AMBP|processed_transcript|CODING|ENST00000466610|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:2:0:0:0,0:0,1:0,0:27,28	82:2:0:0:0,1:0,0:7,7:73,74
9	118094825	.	T	C	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||DEC1|processed_transcript|CODING|ENST00000484171||1),INTRON(MODIFIER||||70|DEC1|protein_coding|CODING|ENST00000374016|4|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	44:1:0:0:0,0:0,0:0,0:43,45	73:2:0:0:0,0:8,8:2,2:61,63
9	119567136	.	A	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1062|ASTN2|protein_coding|CODING|ENST00000373986|11|1),INTRON(MODIFIER||||1288|ASTN2|protein_coding|CODING|ENST00000361209|12|1),INTRON(MODIFIER||||1335|ASTN2|protein_coding|CODING|ENST00000373996|13|1),INTRON(MODIFIER||||1339|ASTN2|protein_coding|CODING|ENST00000313400|13|1),INTRON(MODIFIER||||395|ASTN2|protein_coding|CODING|ENST00000361477|12|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:0:0:0:32,32:0,0:0,0:0,0	76:2:0:0:67,68:0,0:0,0:7,8
9	120132254	.	C	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1288|ASTN2|protein_coding|CODING|ENST00000361209|1|1),INTRON(MODIFIER||||1335|ASTN2|protein_coding|CODING|ENST00000373996|1|1),INTRON(MODIFIER||||1339|ASTN2|protein_coding|CODING|ENST00000313400|1|1),INTRON(MODIFIER||||395|ASTN2|protein_coding|CODING|ENST00000361477|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	27:0:0:0:0,0:27,27:0,0:0,0	83:0:0:0:0,0:76,76:0,0:7,7
9	120990614	.	C	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:0:0:0:0,0:33,33:0,0:0,0	76:0:0:0:0,0:72,72:0,0:4,4
9	122229989	.	A	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:1:0:0:33,34:0,0:0,0:0,0	65:0:0:0:61,61:4,4:0,0:0,0
9	122599904	.	C	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	27:0:0:0:0,0:27,27:0,0:0,0	58:2:0:0:0,0:50,50:0,0:6,7
9	124143859	.	A	G	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-162D16.2|antisense|NON_CODING|ENST00000440807|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:0:0:0:38,38:0,0:0,0:0,0	70:0:0:0:66,66:0,0:4,4:0,0
9	124592593	.	T	C	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||451|TTLL11|protein_coding|CODING|ENST00000373778|8|1),INTRON(MODIFIER||||800|TTLL11|protein_coding|CODING|ENST00000321582|8|1),INTRON(MODIFIER|||||TTLL11|processed_transcript|CODING|ENST00000474723|7|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:1:0:0:0,0:0,0:0,0:35,36	75:0:0:0:1,1:6,6:1,1:67,67
9	125473531	.	C	T	.	PASS	NT=ref;QSS=23;QSS_NT=23;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	50:1:0:0:0,0:49,78:0,0:0,0	148:7:0:0:0,1:133,195:0,2:8,11
9	125473536	.	C	T	.	PASS	NT=ref;QSS=24;QSS_NT=24;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	49:1:0:0:0,0:48,77:0,0:0,0	134:7:0:0:0,0:120,177:1,4:6,9
9	125474527	.	C	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	28:0:0:0:0,0:28,28:0,0:0,0	68:0:0:0:0,0:63,64:0,0:5,5
9	126166832	rs59227768	C	T	.	PASS	NT=ref;QSS=24;QSS_NT=24;SGT=CC->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER||||1009|DENND1A|protein_coding|CODING|ENST00000373624|19|1),INTRON(MODIFIER||||1020|DENND1A|protein_coding|CODING|ENST00000394219|17|1),INTRON(MODIFIER||||529|DENND1A|protein_coding|CODING|ENST00000394215|18|1),INTRON(MODIFIER||||559|DENND1A|protein_coding|CODING|ENST00000373620|19|1),INTRON(MODIFIER||||794|DENND1A|protein_coding|CODING|ENST00000542603|10|1),INTRON(MODIFIER|||||DENND1A|processed_transcript|CODING|ENST00000473039|14|1),INTRON(MODIFIER|||||DENND1A|processed_transcript|CODING|ENST00000491650|10|1),UPSTREAM(MODIFIER|||||DENND1A|processed_transcript|CODING|ENST00000475421||1),UPSTREAM(MODIFIER|||||MIR601|miRNA|NON_CODING|ENST00000385256||1);RSPOS=126166832;dbSNPBuildID=129;SSR=0;SAO=0;VP=050000080001040002000100;GENEINFO=DENND1A:57706;WGT=1;VC=SNV;INT;VLD;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	42:0:0:0:0,0:42,43:0,1:0,0	67:1:0:0:0,0:55,62:1,1:10,10
9	127702095	.	C	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||111|GOLGA1|protein_coding|CODING|ENST00000421514|1|1),INTRON(MODIFIER||||767|GOLGA1|protein_coding|CODING|ENST00000373555|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:0:0:0:0,0:29,30:0,0:0,0	79:0:0:0:0,0:70,72:0,0:9,9
9	128687331	.	G	C	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||146|PBX3|protein_coding|CODING|ENST00000428092|2|1),INTRON(MODIFIER||||253|PBX3|protein_coding|CODING|ENST00000373483|2|1),INTRON(MODIFIER||||262|PBX3|protein_coding|CODING|ENST00000538998|2|1),INTRON(MODIFIER||||351|PBX3|protein_coding|CODING|ENST00000342287|3|1),INTRON(MODIFIER||||359|PBX3|protein_coding|CODING|ENST00000447726|3|1),INTRON(MODIFIER||||434|PBX3|protein_coding|CODING|ENST00000373489|3|1),INTRON(MODIFIER||||455|PBX3|protein_coding|CODING|ENST00000373487|3|1),INTRON(MODIFIER|||||PBX3|nonsense_mediated_decay|CODING|ENST00000373482|2|1),INTRON(MODIFIER|||||PBX3|nonsense_mediated_decay|CODING|ENST00000373492|2|1),INTRON(MODIFIER|||||PBX3|processed_transcript|CODING|ENST00000491787|2|1),INTRON(MODIFIER|||||PBX3|processed_transcript|CODING|ENST00000492314|3|1),UPSTREAM(MODIFIER||||128|PBX3|protein_coding|CODING|ENST00000561297||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:0:0:0:0,0:0,0:33,33:0,0	70:1:0:0:0,0:8,8:60,61:1,1
9	130229476	.	A	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER||||696|LRSAM1|protein_coding|CODING|ENST00000373324|9|1),INTRON(MODIFIER||||723|LRSAM1|protein_coding|CODING|ENST00000300417|9|1),INTRON(MODIFIER||||723|LRSAM1|protein_coding|CODING|ENST00000323301|8|1),INTRON(MODIFIER||||723|LRSAM1|protein_coding|CODING|ENST00000373322|8|1),UPSTREAM(MODIFIER|||||Y_RNA|misc_RNA|NON_CODING|ENST00000363918||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	46:1:0:0:45,55:0,0:0,0:0,1	110:0:0:0:105,140:0,0:0,0:5,8
9	131128673	.	A	G	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER||||101|URM1|protein_coding|CODING|ENST00000372853||1),UPSTREAM(MODIFIER||||146|URM1|protein_coding|CODING|ENST00000452446||1),UPSTREAM(MODIFIER||||63|URM1|protein_coding|CODING|ENST00000372847||1),UPSTREAM(MODIFIER||||63|URM1|protein_coding|CODING|ENST00000372850||1),UPSTREAM(MODIFIER|||||URM1|nonsense_mediated_decay|CODING|ENST00000470840||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:3:0:0:31,36:0,0:0,0:0,0	54:3:0:0:43,44:1,1:6,7:1,2
9	131228483	.	G	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||ODF2|processed_transcript|CODING|ENST00000494663||1),DOWNSTREAM(MODIFIER|||||RP11-339B21.9|antisense|NON_CODING|ENST00000420801||1),INTRON(MODIFIER||||147|ODF2|protein_coding|CODING|ENST00000535026|4|1),INTRON(MODIFIER||||155|ODF2|protein_coding|CODING|ENST00000446274|4|1),INTRON(MODIFIER||||179|ODF2|protein_coding|CODING|ENST00000434106|4|1),INTRON(MODIFIER||||188|ODF2|protein_coding|CODING|ENST00000421776|4|1),INTRON(MODIFIER||||204|ODF2|protein_coding|CODING|ENST00000432065|4|1),INTRON(MODIFIER||||213|ODF2|protein_coding|CODING|ENST00000444119|4|1),INTRON(MODIFIER||||576|ODF2|protein_coding|CODING|ENST00000448249|4|1),INTRON(MODIFIER||||638|ODF2|protein_coding|CODING|ENST00000372791|4|1),INTRON(MODIFIER||||638|ODF2|protein_coding|CODING|ENST00000546203|3|1),INTRON(MODIFIER||||657|ODF2|protein_coding|CODING|ENST00000393533|3|1),INTRON(MODIFIER||||701|ODF2|protein_coding|CODING|ENST00000372814|3|1),INTRON(MODIFIER||||805|ODF2|protein_coding|CODING|ENST00000303890|6|1),INTRON(MODIFIER||||824|ODF2|protein_coding|CODING|ENST00000351030|4|1),INTRON(MODIFIER||||829|ODF2|protein_coding|CODING|ENST00000372796|4|1),INTRON(MODIFIER|||||ODF2|nonsense_mediated_decay|CODING|ENST00000393527|6|1),INTRON(MODIFIER|||||ODF2|processed_transcript|CODING|ENST00000470061|4|1),INTRON(MODIFIER|||||ODF2|processed_transcript|CODING|ENST00000497812|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:1:0:0:0,1:0,0:32,33:0,0	59:0:0:0:1,1:0,0:54,57:4,4
9	131418441	rs187922634	A	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||VTI1BP4|processed_pseudogene|NON_CODING|ENST00000427516||1),INTRON(MODIFIER||||139|WDR34|protein_coding|CODING|ENST00000419989|1|1),INTRON(MODIFIER||||272|WDR34|protein_coding|CODING|ENST00000451652|1|1),INTRON(MODIFIER||||536|WDR34|protein_coding|CODING|ENST00000372715|1|1),INTRON(MODIFIER|||||WDR34|processed_transcript|CODING|ENST00000480613|1|1);RSPOS=131418441;GMAF=0.054;dbSNPBuildID=135;SSR=0;SAO=0;VP=050000080005000014000100;GENEINFO=WDR34:89891;WGT=1;VC=SNV;INT;ASP;KGPhase1;KGPROD	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:1:0:0:28,30:0,0:0,0:0,0	62:5:0:0:49,52:1,2:1,2:6,7
9	131473872	.	C	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||Metazoa_SRP|misc_RNA|NON_CODING|ENST00000577943||1),INTRON(MODIFIER||||889|PKN3|protein_coding|CODING|ENST00000291906|6|1),UPSTREAM(MODIFIER|||||PKN3|processed_transcript|CODING|ENST00000483521||1),UPSTREAM(MODIFIER|||||PKN3|processed_transcript|CODING|ENST00000485301||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:1:0:0:0,0:29,30:0,0:0,0	59:1:0:0:0,0:53,55:0,0:5,5
9	131724119	.	A	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||NUP188|nonsense_mediated_decay|CODING|ENST00000419126||1),DOWNSTREAM(MODIFIER|||||NUP188|processed_transcript|CODING|ENST00000491990||1),DOWNSTREAM(MODIFIER|||||NUP188|processed_transcript|CODING|ENST00000550219||1),INTRON(MODIFIER||||1749|NUP188|protein_coding|CODING|ENST00000372577|8|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	28:1:0:0:27,29:0,0:0,0:0,0	65:1:0:0:60,63:0,0:4,4:0,0
9	131813455	.	T	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=TT->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=DOWNSTREAM(MODIFIER|||||FAM73B|processed_transcript|CODING|ENST00000474534||1),INTRON(MODIFIER||||323|FAM73B|protein_coding|CODING|ENST00000277475|6|1),INTRON(MODIFIER||||349|FAM73B|protein_coding|CODING|ENST00000406926|6|1),INTRON(MODIFIER||||593|FAM73B|protein_coding|CODING|ENST00000358369|6|1),INTRON(MODIFIER|||||FAM73B|nonsense_mediated_decay|CODING|ENST00000439290|6|1),INTRON(MODIFIER|||||FAM73B|nonsense_mediated_decay|CODING|ENST00000445183|6|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:0:0:0:0,0:0,0:0,0:29,29	82:0:0:0:0,0:12,12:0,0:70,72
9	132137361	.	T	C	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||Metazoa_SRP|misc_RNA|NON_CODING|ENST00000485164||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:0:0:0:0,0:0,0:0,0:39,39	65:1:0:0:0,0:5,5:0,0:59,60
9	132172840	.	T	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:5:0:0:0,0:0,1:1,1:29,48	107:33:4:0:0,0:8,23:0,2:66,118
9	132651373	.	T	G	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||245|FNBP1|protein_coding|CODING|ENST00000443566||1),EXON(MODIFIER|||||FNBP1|processed_transcript|CODING|ENST00000479142|2|1),UPSTREAM(MODIFIER|||||RP11-409K20.7|processed_pseudogene|NON_CODING|ENST00000417984||1),UTR_3_PRIME(MODIFIER||||608|FNBP1|protein_coding|CODING|ENST00000420781|17|1),UTR_3_PRIME(MODIFIER||||617|FNBP1|protein_coding|CODING|ENST00000372416|17|1),UTR_3_PRIME(MODIFIER||||617|FNBP1|protein_coding|CODING|ENST00000446176|17|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	24:1:0:0:0,0:0,0:1,1:22,23	71:4:0:0:0,0:2,2:18,20:47,49
9	132811123	.	C	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER||||552|GPR107|protein_coding|CODING|ENST00000347136||1),UPSTREAM(MODIFIER||||571|GPR107|protein_coding|CODING|ENST00000372410||1),UPSTREAM(MODIFIER||||600|GPR107|protein_coding|CODING|ENST00000372406||1),UPSTREAM(MODIFIER|||||GPR107|nonsense_mediated_decay|CODING|ENST00000475101||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	27:0:0:0:0,0:27,29:0,0:0,0	64:3:0:0:0,0:54,58:7,9:0,0
9	133834029	.	A	C	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=AA->AC;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:5:0:0:27,38:0,4:0,0:0,2	54:9:1:0:34,63:11,29:0,0:0,3
9	134084355	.	A	G	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||2080|NUP214|protein_coding|CODING|ENST00000411637|30|1),INTRON(MODIFIER||||2090|NUP214|protein_coding|CODING|ENST00000359428|30|1),INTRON(MODIFIER||||2091|NUP214|protein_coding|CODING|ENST00000451030|30|1),INTRON(MODIFIER||||916|NUP214|protein_coding|CODING|ENST00000483497|5|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:0:0:0:33,34:0,0:0,0:0,0	63:1:0:0:54,56:0,0:8,8:0,0
9	134091928	rs13302667	C	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||2080|NUP214|protein_coding|CODING|ENST00000411637|31|1),INTRON(MODIFIER||||2090|NUP214|protein_coding|CODING|ENST00000359428|31|1),INTRON(MODIFIER||||2091|NUP214|protein_coding|CODING|ENST00000451030|31|1),INTRON(MODIFIER||||916|NUP214|protein_coding|CODING|ENST00000483497|6|1);RSPOS=134091928;dbSNPBuildID=121;SSR=0;SAO=0;VP=050000080001000002000100;GENEINFO=NUP214:8021;WGT=1;VC=SNV;INT;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:0:0:0:0,0:30,30:0,0:0,0	54:5:0:0:0,0:42,45:0,0:7,9
9	134203650	.	G	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:0:0:0:0,0:0,0:31,31:0,0	107:1:0:0:6,7:0,0:100,101:0,0
9	134203700	.	A	G	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:1:0:0:33,33:0,1:0,0:0,0	96:0:0:0:80,81:3,3:13,13:0,0
9	134203712	.	G	A	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:1:0:0:0,0:0,0:34,35:0,0	89:0:0:0:11,11:0,0:77,78:1,1
9	134391825	.	G	C	.	PASS	NT=ref;QSS=25;QSS_NT=25;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||155|POMT1|protein_coding|CODING|ENST00000415075||1),DOWNSTREAM(MODIFIER||||295|POMT1|protein_coding|CODING|ENST00000441334||1),DOWNSTREAM(MODIFIER|||||POMT1|processed_transcript|CODING|ENST00000462375||1),DOWNSTREAM(MODIFIER|||||RP11-334J6.6|antisense|NON_CODING|ENST00000415423||1),INTRON(MODIFIER||||465|POMT1|protein_coding|CODING|ENST00000541219|7|1),INTRON(MODIFIER||||573|POMT1|protein_coding|CODING|ENST00000419118|10|1),INTRON(MODIFIER||||608|POMT1|protein_coding|CODING|ENST00000404875|11|1),INTRON(MODIFIER||||671|POMT1|protein_coding|CODING|ENST00000341012|12|1),INTRON(MODIFIER||||695|POMT1|protein_coding|CODING|ENST00000354713|12|1),INTRON(MODIFIER||||725|POMT1|protein_coding|CODING|ENST00000402686|13|1),INTRON(MODIFIER||||725|POMT1|protein_coding|CODING|ENST00000423007|13|1),INTRON(MODIFIER||||747|POMT1|protein_coding|CODING|ENST00000372228|13|1),INTRON(MODIFIER|||||POMT1|processed_transcript|CODING|ENST00000485278|3|1),UPSTREAM(MODIFIER||||346|POMT1|protein_coding|CODING|ENST00000372220||1),UPSTREAM(MODIFIER|||||POMT1|processed_transcript|CODING|ENST00000467848||1),UPSTREAM(MODIFIER|||||POMT1|processed_transcript|CODING|ENST00000494883||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	50:1:0:0:0,0:0,0:49,49:0,1	85:1:0:0:0,0:7,8:77,78:0,0
9	134462632	.	T	C	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=TT->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER||||1023|RAPGEF1|protein_coding|CODING|ENST00000429421|17|1),INTRON(MODIFIER||||1077|RAPGEF1|protein_coding|CODING|ENST00000266110|19|1),INTRON(MODIFIER||||1077|RAPGEF1|protein_coding|CODING|ENST00000372189|19|1),INTRON(MODIFIER||||1094|RAPGEF1|protein_coding|CODING|ENST00000357686|19|1),INTRON(MODIFIER||||1094|RAPGEF1|protein_coding|CODING|ENST00000372195|19|1),INTRON(MODIFIER||||1095|RAPGEF1|protein_coding|CODING|ENST00000372190|19|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:1:0:0:0,1:0,3:0,0:37,42	48:4:0:0:0,0:10,14:0,0:34,39
9	135798023	.	A	G	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||TSC1|processed_transcript|CODING|ENST00000490179||1),INTRON(MODIFIER||||1113|TSC1|protein_coding|CODING|ENST00000545250|3|1),INTRON(MODIFIER||||1164|TSC1|protein_coding|CODING|ENST00000298552|6|1),INTRON(MODIFIER||||1164|TSC1|protein_coding|CODING|ENST00000440111|4|1),INTRON(MODIFIER||||282|TSC1|protein_coding|CODING|ENST00000537172|2|1),INTRON(MODIFIER||||366|TSC1|protein_coding|CODING|ENST00000403810|6|1),INTRON(MODIFIER|||||TSC1|processed_transcript|CODING|ENST00000461879|1|1),INTRON(MODIFIER|||||TSC1|processed_transcript|CODING|ENST00000475903|5|1),INTRON(MODIFIER|||||TSC1|retained_intron|CODING|ENST00000493467|6|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:0:0:0:32,32:0,0:0,0:0,0	71:2:0:0:61,62:0,0:8,9:0,0
9	135946921	rs490954	C	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-326L24.4|antisense|NON_CODING|ENST00000423824|1|1),NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|Ccc/Gcc|P612A|687|CEL|protein_coding|CODING|ENST00000351304|10|1),NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|Ccc/Gcc|P681A|756|CEL|protein_coding|CODING|ENST00000372080|11|1);RSPOS=135946921;dbSNPBuildID=83;SSR=0;SAO=0;VP=050000000a05000002000100;GENEINFO=CEL:1056;WGT=1;VC=SNV;NSM;REF;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	28:2:0:0:0,0:26,32:0,0:0,0	40:2:0:0:0,0:33,38:5,5:0,0
9	136584962	.	G	T	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||283|SARDH|protein_coding|CODING|ENST00000371867|5|1),INTRON(MODIFIER||||607|SARDH|protein_coding|CODING|ENST00000427237|6|1),INTRON(MODIFIER||||750|SARDH|protein_coding|CODING|ENST00000422262|5|1),INTRON(MODIFIER||||918|SARDH|protein_coding|CODING|ENST00000371872|6|1),INTRON(MODIFIER||||918|SARDH|protein_coding|CODING|ENST00000439388|6|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:1:0:0:0,0:0,0:37,38:0,0	82:1:0:0:0,0:0,0:75,78:6,6
9	136584986	.	T	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER||||283|SARDH|protein_coding|CODING|ENST00000371867|5|1),INTRON(MODIFIER||||607|SARDH|protein_coding|CODING|ENST00000427237|6|1),INTRON(MODIFIER||||750|SARDH|protein_coding|CODING|ENST00000422262|5|1),INTRON(MODIFIER||||918|SARDH|protein_coding|CODING|ENST00000371872|6|1),INTRON(MODIFIER||||918|SARDH|protein_coding|CODING|ENST00000439388|6|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:3:0:0:0,0:0,1:0,0:32,35	81:1:0:0:0,0:8,8:0,0:72,75
9	136584987	.	G	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||283|SARDH|protein_coding|CODING|ENST00000371867|5|1),INTRON(MODIFIER||||607|SARDH|protein_coding|CODING|ENST00000427237|6|1),INTRON(MODIFIER||||750|SARDH|protein_coding|CODING|ENST00000422262|5|1),INTRON(MODIFIER||||918|SARDH|protein_coding|CODING|ENST00000371872|6|1),INTRON(MODIFIER||||918|SARDH|protein_coding|CODING|ENST00000439388|6|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:3:0:0:0,0:0,0:32,36:0,0	79:1:0:0:8,8:0,0:70,73:0,0
9	136657036	.	T	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||839|VAV2|protein_coding|CODING|ENST00000406606|11|1),INTRON(MODIFIER||||868|VAV2|protein_coding|CODING|ENST00000371851|11|1),INTRON(MODIFIER||||878|VAV2|protein_coding|CODING|ENST00000371850|12|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:1:0:0:0,0:0,0:0,0:29,34	78:3:0:0:0,0:0,0:7,7:68,74
9	137099166	rs74974075	G	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=137099166;GMAF=0.0362;dbSNPBuildID=131;SSR=0;SAO=0;VP=050100000001040116000100;WGT=1;VC=SNV;SLO;VLD;GNO;KGPhase1;KGPROD;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	27:2:0:0:0,0:0,0:25,28:0,0	55:4:0:0:0,1:7,8:44,49:0,0
9	137428055	.	A	C	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-473E2.4|lincRNA|NON_CODING|ENST00000435284|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:1:0:0:29,30:1,1:0,0:0,0	53:3:0:0:38,39:12,15:0,0:0,0
9	138196528	rs62571609	G	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=138196528;dbSNPBuildID=129;SSR=0;SAO=0;VP=050000000001040102000100;WGT=1;VC=SNV;VLD;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:0:0:0:0,0:0,0:34,34:0,0	62:1:0:0:4,5:0,0:57,60:0,0
9	138363083	.	T	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-426A6.7|antisense|NON_CODING|ENST00000455039|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:2:0:0:0,1:0,0:0,0:27,32	52:0:0:0:1,1:7,7:0,0:44,46
9	138817931	.	T	C	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:0:0:0:0,0:1,1:0,0:38,39	59:0:0:0:0,0:10,10:1,1:48,48
9	139492800	.	T	G	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=TT->GT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||U3|snoRNA|NON_CODING|ENST00000516631||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	46:1:0:0:0,0:0,0:0,2:45,53	80:2:0:0:0,0:0,0:10,12:68,79
9	139806877	.	A	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||170|TRAF2|protein_coding|CODING|ENST00000419057||1),DOWNSTREAM(MODIFIER||||192|TRAF2|protein_coding|CODING|ENST00000429509||1),DOWNSTREAM(MODIFIER|||||TRAF2|processed_transcript|CODING|ENST00000474950||1),INTRON(MODIFIER||||422|TRAF2|protein_coding|CODING|ENST00000371645|5|1),INTRON(MODIFIER||||501|TRAF2|protein_coding|CODING|ENST00000247668|6|1),INTRON(MODIFIER||||501|TRAF2|protein_coding|CODING|ENST00000536468|7|1),INTRON(MODIFIER||||553|TRAF2|protein_coding|CODING|ENST00000359662|6|1),INTRON(MODIFIER|||||TRAF2|processed_transcript|CODING|ENST00000469701|2|1),INTRON(MODIFIER|||||TRAF2|processed_transcript|CODING|ENST00000482854|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:0:0:0:29,29:0,0:0,0:0,0	60:0:0:0:55,55:0,0:5,7:0,0
9	139996891	.	A	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||MAN1B1|retained_intron|CODING|ENST00000371587||1),INTRON(MODIFIER||||402|MAN1B1|protein_coding|CODING|ENST00000474902|6|1),INTRON(MODIFIER||||699|MAN1B1|protein_coding|CODING|ENST00000371589|8|1),INTRON(MODIFIER|||||MAN1B1|nonsense_mediated_decay|CODING|ENST00000538003|9|1),INTRON(MODIFIER|||||MAN1B1|nonsense_mediated_decay|CODING|ENST00000544448|8|1),UPSTREAM(MODIFIER|||||MAN1B1|processed_transcript|CODING|ENST00000540391||1),UPSTREAM(MODIFIER|||||MAN1B1|retained_intron|CODING|ENST00000480100||1),UPSTREAM(MODIFIER|||||MAN1B1|retained_intron|CODING|ENST00000535028||1),UPSTREAM(MODIFIER|||||MAN1B1|retained_intron|CODING|ENST00000536268||1),UPSTREAM(MODIFIER|||||MAN1B1|retained_intron|CODING|ENST00000536349||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:3:0:0:27,39:0,1:0,0:0,0	66:5:0:0:54,84:0,0:7,12:0,1
9	140218078	.	A	G	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||514|EXD3|protein_coding|CODING|ENST00000342129|19|1),INTRON(MODIFIER||||876|EXD3|protein_coding|CODING|ENST00000340951|19|1),INTRON(MODIFIER|||||EXD3|nonsense_mediated_decay|CODING|ENST00000491734|13|1),INTRON(MODIFIER|||||EXD3|retained_intron|CODING|ENST00000487745|9|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	55:3:0:0:50,52:1,2:1,1:0,0	85:2:0:0:76,82:1,3:6,6:0,0
9	140239244	.	T	C	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||EXD3|processed_transcript|CODING|ENST00000484392||1),INTRON(MODIFIER||||514|EXD3|protein_coding|CODING|ENST00000342129|17|1),INTRON(MODIFIER||||876|EXD3|protein_coding|CODING|ENST00000340951|17|1),INTRON(MODIFIER|||||EXD3|nonsense_mediated_decay|CODING|ENST00000491734|11|1),INTRON(MODIFIER|||||EXD3|retained_intron|CODING|ENST00000487745|7|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	42:2:0:0:0,0:0,0:0,0:40,42	67:4:0:0:0,0:6,6:2,2:55,61
9	140424659	.	T	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1280|PNPLA7|protein_coding|CODING|ENST00000434090|7|1),INTRON(MODIFIER||||1317|PNPLA7|protein_coding|CODING|ENST00000277531|7|1),INTRON(MODIFIER||||1342|PNPLA7|protein_coding|CODING|ENST00000406427|8|1),INTRON(MODIFIER|||||PNPLA7|nonsense_mediated_decay|CODING|ENST00000491019|6|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:2:0:0:0,0:0,0:0,0:33,35	89:2:0:0:0,0:11,12:0,0:76,78
9	140563819	.	C	A	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=CC->AC;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER||||1298|EHMT1|protein_coding|CODING|ENST00000460843|1|1),INTRON(MODIFIER||||808|EHMT1|protein_coding|CODING|ENST00000462484|1|1),INTRON(MODIFIER||||825|EHMT1|protein_coding|CODING|ENST00000334856|1|1),INTRON(MODIFIER|||||EHMT1|processed_transcript|CODING|ENST00000371394|1|1),INTRON(MODIFIER|||||EHMT1|processed_transcript|CODING|ENST00000460486|1|1),INTRON(MODIFIER|||||EHMT1|processed_transcript|CODING|ENST00000492232|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	89:17:0:0:0,4:72,111:0,0:0,0	116:30:0:0:7,14:79,134:0,0:0,0
9	140675400	.	T	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||EHMT1|processed_transcript|CODING|ENST00000465566||1),INTRON(MODIFIER||||1298|EHMT1|protein_coding|CODING|ENST00000460843|14|1),INTRON(MODIFIER||||808|EHMT1|protein_coding|CODING|ENST00000462484|14|1),INTRON(MODIFIER||||825|EHMT1|protein_coding|CODING|ENST00000334856|14|1),INTRON(MODIFIER|||||EHMT1|nonsense_mediated_decay|CODING|ENST00000462942|9|1),INTRON(MODIFIER|||||EHMT1|processed_transcript|CODING|ENST00000371394|13|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:6:0:0:0,0:1,2:0,4:30,51	47:5:0:0:0,0:6,8:0,4:36,48
9	140712852	.	A	G	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||EHMT1|processed_transcript|CODING|ENST00000486164||1),DOWNSTREAM(MODIFIER|||||EHMT1|processed_transcript|CODING|ENST00000488242||1),DOWNSTREAM(MODIFIER|||||EHMT1|retained_intron|CODING|ENST00000483653||1),INTRON(MODIFIER||||1298|EHMT1|protein_coding|CODING|ENST00000460843|25|1),INTRON(MODIFIER|||||EHMT1|nonsense_mediated_decay|CODING|ENST00000462942|20|1),INTRON(MODIFIER|||||EHMT1|retained_intron|CODING|ENST00000475564|2|1),INTRON(MODIFIER|||||EHMT1|retained_intron|CODING|ENST00000494249|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	47:2:0:0:45,47:0,0:0,0:0,0	76:2:0:0:70,72:0,0:4,4:0,0
9	141068704	.	T	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=EXON(MODIFIER|||||TUBBP5|processed_transcript|NON_CODING|ENST00000503395|2|1),UPSTREAM(MODIFIER|||||TUBBP5|processed_transcript|NON_CODING|ENST00000290377||1),UPSTREAM(MODIFIER|||||TUBBP5|transcribed_unprocessed_pseudogene|NON_CODING|ENST00000508529||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:0:0:0:0,0:0,0:1,1:34,35	71:1:0:0:0,0:6,9:0,0:64,66
10	369208	.	C	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1556|DIP2C|protein_coding|CODING|ENST00000280886|31|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:3:0:0:0,0:26,82:0,0:0,3	62:4:0:0:0,0:52,143:0,1:6,9
10	393781	rs202239566	C	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1556|DIP2C|protein_coding|CODING|ENST00000280886|26|1);RSPOS=393781;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000080005000002000100;WGT=1;VC=SNV;INT;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:3:0:0:0,0:29,39:0,0:0,0	69:8:0:0:0,0:55,72:6,12:0,0
10	466033	.	C	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1556|DIP2C|protein_coding|CODING|ENST00000280886|5|1),INTRON(MODIFIER||||656|DIP2C|protein_coding|CODING|ENST00000381496|6|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:1:0:0:0,0:30,31:0,0:0,0	61:0:0:0:0,0:56,56:0,0:5,5
10	582442	rs12761882	A	G	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1556|DIP2C|protein_coding|CODING|ENST00000280886|1|1),INTRON(MODIFIER||||186|DIP2C|protein_coding|CODING|ENST00000423550|1|1),INTRON(MODIFIER||||656|DIP2C|protein_coding|CODING|ENST00000381496|2|1);RSPOS=582442;dbSNPBuildID=121;SSR=0;SAO=0;VP=050000080001000002000100;GENEINFO=DIP2C:22982;WGT=1;VC=SNV;INT;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:2:1:0:31,33:0,0:0,0:0,0	87:5:2:0:74,76:1,2:7,8:0,1
10	694149	rs61833013	A	G	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1556|DIP2C|protein_coding|CODING|ENST00000280886|1|1),INTRON(MODIFIER||||186|DIP2C|protein_coding|CODING|ENST00000423550|1|1),UPSTREAM(MODIFIER||||198|C10orf108|protein_coding|CODING|ENST00000381489||1),UPSTREAM(MODIFIER||||221|C10orf108|protein_coding|CODING|ENST00000441152||1);RSPOS=694149;GMAF=0.005;dbSNPBuildID=129;SSR=0;SAO=0;VP=050000080001040016000100;GENEINFO=DIP2C:22982;WGT=1;VC=SNV;INT;VLD;KGPhase1;KGPROD;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:1:0:0:38,39:0,0:0,0:0,0	54:6:0:0:42,48:0,0:6,7:0,0
10	703828	.	C	G	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=CC->CG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER||||1556|DIP2C|protein_coding|CODING|ENST00000280886|1|1),INTRON(MODIFIER||||186|DIP2C|protein_coding|CODING|ENST00000423550|1|1),INTRON(MODIFIER||||198|C10orf108|protein_coding|CODING|ENST00000381489|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	54:3:0:0:0,0:50,65:0,2:1,1	83:5:0:0:1,1:70,100:7,10:0,0
10	717289	rs111406864	C	T	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||RP11-809C18.1|processed_transcript|NON_CODING|ENST00000443662||1),INTRON(MODIFIER||||1556|DIP2C|protein_coding|CODING|ENST00000280886|1|1),INTRON(MODIFIER||||186|DIP2C|protein_coding|CODING|ENST00000423550|1|1);RSPOS=717289;dbSNPBuildID=132;SSR=0;SAO=0;VP=050000080001000102000100;GENEINFO=DIP2C:22982;WGT=1;VC=SNV;INT;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:1:0:0:1,1:36,39:1,1:0,0	87:0:0:0:0,0:79,80:1,1:7,7
10	717325	.	G	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||RP11-809C18.1|processed_transcript|NON_CODING|ENST00000443662||1),INTRON(MODIFIER||||1556|DIP2C|protein_coding|CODING|ENST00000280886|1|1),INTRON(MODIFIER||||186|DIP2C|protein_coding|CODING|ENST00000423550|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:1:0:0:0,0:0,0:29,33:0,0	56:5:0:0:4,5:0,1:47,54:0,0
10	1057492	rs11253572	T	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->GT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=DOWNSTREAM(MODIFIER|||||GTPBP4|processed_transcript|CODING|ENST00000491261||1),DOWNSTREAM(MODIFIER|||||GTPBP4|processed_transcript|CODING|ENST00000491635||1),INTRON(MODIFIER||||518|GTPBP4|protein_coding|CODING|ENST00000538293|12|1),INTRON(MODIFIER||||587|GTPBP4|protein_coding|CODING|ENST00000545048|13|1),INTRON(MODIFIER||||634|GTPBP4|protein_coding|CODING|ENST00000360803|13|1),UPSTREAM(MODIFIER|||||GTPBP4|processed_transcript|CODING|ENST00000483839||1);RSPOS=1057492;dbSNPBuildID=120;SSR=0;SAO=0;VP=050000080001000002000100;GENEINFO=GTPBP4:23560;WGT=1;VC=SNV;INT;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:3:0:0:0,0:0,0:0,1:34,37	73:1:0:0:0,0:0,0:9,10:63,64
10	1255630	.	A	G	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||739|ADARB2|protein_coding|CODING|ENST00000381312|7|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:1:0:0:30,30:2,3:0,0:0,1	63:2:0:0:52,52:3,3:6,8:0,0
10	1275635	rs75596623	C	G	.	PASS	NT=ref;QSS=23;QSS_NT=23;SGT=CC->CG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER||||739|ADARB2|protein_coding|CODING|ENST00000381312|6|1),INTRON(MODIFIER|||||ADARB2|processed_transcript|CODING|ENST00000469464|2|1);RSPOS=1275635;dbSNPBuildID=131;SSR=0;SAO=0;VP=050000080005000002000100;GENEINFO=ADARB2:105;WGT=1;VC=SNV;INT;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	49:0:0:0:0,0:49,49:0,0:0,0	111:2:0:0:0,0:104,108:5,5:0,0
10	1369881	.	A	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||739|ADARB2|protein_coding|CODING|ENST00000381312|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	24:0:0:0:24,26:0,0:0,0:0,0	39:4:0:0:29,36:5,7:0,0:1,2
10	1503024	rs112868394	G	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||739|ADARB2|protein_coding|CODING|ENST00000381312|1|1);RSPOS=1503024;dbSNPBuildID=132;SSR=0;SAO=0;VP=050000080001040102000100;GENEINFO=ADARB2:105;WGT=1;VC=SNV;INT;VLD;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:3:0:0:0,0:0,1:27,32:0,0	29:2:0:0:4,5:0,0:23,29:0,0
10	1506340	.	A	G	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||739|ADARB2|protein_coding|CODING|ENST00000381312|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	52:3:0:0:48,75:1,1:0,1:0,0	129:2:0:0:119,160:1,1:7,16:0,0
10	1702197	rs11815407	C	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||739|ADARB2|protein_coding|CODING|ENST00000381312|1|1);RSPOS=1702197;dbSNPBuildID=120;SSR=0;SAO=0;VP=050000080001000002000100;GENEINFO=ADARB2:105;WGT=1;VC=SNV;INT;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:0:0:0:0,0:29,29:1,2:0,0	70:2:0:0:0,0:57,59:11,14:0,0
10	1702211	rs77175002	C	T	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||739|ADARB2|protein_coding|CODING|ENST00000381312|1|1);RSPOS=1702211;dbSNPBuildID=131;SSR=0;SAO=0;VP=050000080001000102000100;GENEINFO=ADARB2:105;WGT=1;VC=SNV;INT;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:2:0:0:0,0:28,31:0,0:0,0	67:4:0:0:0,0:52,58:0,0:11,11
10	2357465	rs7909708	C	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||RP11-311B18.1|lincRNA|NON_CODING|ENST00000418295||1);RSPOS=2357465;dbSNPBuildID=116;SSR=0;SAO=0;VP=050000000001040102000100;WGT=1;VC=SNV;VLD;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:2:0:0:0,0:35,38:0,0:0,0	77:4:0:0:0,0:67,77:0,0:6,6
10	3268940	rs5001276	C	A	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-298E9.5|lincRNA|NON_CODING|ENST00000445932|2|1);RSPOS=3268940;dbSNPBuildID=113;SSR=0;SAO=0;VP=05000000001500000e000100;WGT=1;VC=SNV;OTH;ASP;KGPilot123;KGPROD;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	18:0:17:0:0,0:18,18:0,0:0,0	35:4:22:0:10,10:21,27:0,0:0,0
10	3273813	.	A	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||RP11-298E9.5|lincRNA|NON_CODING|ENST00000445932||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:1:0:0:29,30:0,0:0,0:0,0	60:1:0:0:53,53:0,0:5,6:1,1
10	3612397	.	T	G	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	42:2:0:0:0,0:1,2:0,0:39,41	85:0:0:0:1,1:2,2:8,10:74,76
10	3696120	.	G	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:0:0:0:0,0:0,0:38,39:0,0	67:3:0:0:6,6:0,0:58,63:0,0
10	4742453	.	G	T	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:0:0:0:0,0:0,0:38,38:0,0	84:0:0:0:0,0:0,0:76,76:8,8
10	4985748	.	A	G	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||323|AKR1C1|protein_coding|CODING|ENST00000434459|4|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:0:0:0:32,32:1,1:0,0:0,0	78:1:0:0:70,71:0,0:6,7:1,1
10	5423549	.	C	A	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	48:8:0:0:0,0:39,63:0,0:1,1	72:2:2:0:5,6:65,103:0,0:0,0
10	6160284	.	G	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||401|RBM17|protein_coding|CODING|ENST00000379888||1),DOWNSTREAM(MODIFIER||||401|RBM17|protein_coding|CODING|ENST00000446108||1),DOWNSTREAM(MODIFIER|||||RBM17|processed_transcript|CODING|ENST00000465906||1),DOWNSTREAM(MODIFIER|||||RBM17|processed_transcript|CODING|ENST00000467080||1),DOWNSTREAM(MODIFIER|||||RBM17|processed_transcript|CODING|ENST00000476706||1),DOWNSTREAM(MODIFIER|||||RBM17|processed_transcript|CODING|ENST00000496762||1),DOWNSTREAM(MODIFIER|||||RP11-414H17.7|antisense|NON_CODING|ENST00000446200||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:1:0:0:0,0:0,0:31,32:0,0	61:3:0:0:6,7:0,0:52,53:0,0
10	6387647	rs56365134	C	G	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=CC->CG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER||||183|AL137145.1|protein_coding|CODING|ENST00000391437||1);RSPOS=6387647;GMAF=0.1511;dbSNPBuildID=129;SSR=0;SAO=0;VP=050000000001040016000100;WGT=1;VC=SNV;VLD;KGPhase1;KGPROD;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	25:1:0:0:0,0:23,24:0,0:1,1	46:2:0:0:0,0:34,38:9,9:1,1
10	7568713	.	G	A	.	PASS	NT=ref;QSS=23;QSS_NT=23;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	65:19:0:0:0,2:0,0:46,71:0,0	163:36:0:0:13,18:0,0:114,179:0,0
10	7659398	.	G	A	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=EXON(MODIFIER|||||ITIH5|retained_intron|CODING|ENST00000476417|1|1),INTRON(MODIFIER||||695|ITIH5|protein_coding|CODING|ENST00000397146|5|1),INTRON(MODIFIER||||702|ITIH5|protein_coding|CODING|ENST00000397145|5|1),INTRON(MODIFIER||||723|ITIH5|protein_coding|CODING|ENST00000446830|5|1),INTRON(MODIFIER||||742|ITIH5|protein_coding|CODING|ENST00000298441|1|1),INTRON(MODIFIER||||956|ITIH5|protein_coding|CODING|ENST00000256861|5|1),INTRON(MODIFIER|||||ITIH5|processed_transcript|CODING|ENST00000434980|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	42:1:0:0:0,0:0,0:41,42:0,0	68:0:0:0:5,5:0,0:63,63:0,0
10	9315619	.	A	G	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||RP4-660B20.1|lincRNA|NON_CODING|ENST00000458168||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	42:0:0:0:42,43:0,0:0,0:0,0	79:4:0:0:64,70:0,1:10,12:1,1
10	9716047	.	A	G	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=AA->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:0:0:0:30,30:1,1:0,0:0,0	78:3:0:0:64,67:0,0:11,11:0,0
10	11184848	.	G	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||488|CELF2|protein_coding|CODING|ENST00000417956|1|1),INTRON(MODIFIER||||490|CELF2|protein_coding|CODING|ENST00000399850|1|1),INTRON(MODIFIER||||508|CELF2|protein_coding|CODING|ENST00000379261|1|1),INTRON(MODIFIER||||508|CELF2|protein_coding|CODING|ENST00000416382|1|1),INTRON(MODIFIER||||521|CELF2|protein_coding|CODING|ENST00000450189|1|1),INTRON(MODIFIER||||521|CELF2|protein_coding|CODING|ENST00000542579|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:1:0:0:0,0:0,0:28,29:0,0	65:2:0:0:0,0:4,4:59,61:0,0
10	11670880	.	C	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:4:0:0:0,0:33,37:0,0:0,0	49:1:0:0:0,0:43,45:0,0:5,5
10	12450433	.	A	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||357|CAMK1D|protein_coding|CODING|ENST00000378845|1|1),INTRON(MODIFIER||||385|CAMK1D|protein_coding|CODING|ENST00000378847|1|1),INTRON(MODIFIER|||||CAMK1D|processed_transcript|CODING|ENST00000487696|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:0:0:0:33,33:1,1:0,0:0,0	93:2:0:0:84,84:1,2:6,7:0,0
10	13557041	.	A	G	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||426|BEND7|protein_coding|CODING|ENST00000396898|2|1),INTRON(MODIFIER||||519|BEND7|protein_coding|CODING|ENST00000396900|2|1),INTRON(MODIFIER|||||BEND7|processed_transcript|CODING|ENST00000466271|2|1),UPSTREAM(MODIFIER|||||Y_RNA|misc_RNA|NON_CODING|ENST00000365638||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:0:0:0:34,34:0,0:0,0:0,0	73:0:0:0:67,67:0,0:6,6:0,0
10	15799712	.	T	C	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:1:0:0:0,0:0,0:0,0:35,36	75:1:0:0:0,0:6,6:0,0:68,69
10	16189815	.	C	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	27:0:0:0:0,0:27,27:0,0:0,0	69:0:0:0:0,0:62,62:0,0:7,8
10	17294474	rs113885866	C	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=17294474;dbSNPBuildID=132;SSR=0;SAO=0;VP=050000000001000102000100;WGT=1;VC=SNV;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:1:0:0:0,0:35,38:0,0:0,1	56:1:0:0:0,0:46,59:1,1:8,8
10	18314315	.	C	T	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||557|SLC39A12|protein_coding|CODING|ENST00000539911|11|1),INTRON(MODIFIER||||654|SLC39A12|protein_coding|CODING|ENST00000377374|11|1),INTRON(MODIFIER||||690|SLC39A12|protein_coding|CODING|ENST00000377371|12|1),INTRON(MODIFIER||||691|SLC39A12|protein_coding|CODING|ENST00000377369|12|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:0:0:0:0,0:36,36:0,0:0,0	82:0:0:0:0,0:74,74:0,0:8,8
10	18651205	.	A	T	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||410|CACNB2|protein_coding|CODING|ENST00000377328|2|1),INTRON(MODIFIER||||567|CACNB2|protein_coding|CODING|ENST00000377319|1|1),INTRON(MODIFIER||||605|CACNB2|protein_coding|CODING|ENST00000396576|1|1),INTRON(MODIFIER||||606|CACNB2|protein_coding|CODING|ENST00000377329|1|1),INTRON(MODIFIER||||608|CACNB2|protein_coding|CODING|ENST00000377331|2|1),INTRON(MODIFIER||||632|CACNB2|protein_coding|CODING|ENST00000282343|2|1),INTRON(MODIFIER||||636|CACNB2|protein_coding|CODING|ENST00000352115|2|1),INTRON(MODIFIER||||660|CACNB2|protein_coding|CODING|ENST00000324631|2|1),INTRON(MODIFIER|||||CACNB2|retained_intron|CODING|ENST00000498816|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:1:0:0:39,40:0,0:0,0:0,0	77:0:0:0:69,69:0,0:0,0:8,8
10	19501669	.	C	A	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1473|C10orf112|protein_coding|CODING|ENST00000454679|3|1),INTRON(MODIFIER||||1486|C10orf112|protein_coding|CODING|ENST00000377266|4|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:1:0:0:0,0:36,37:0,0:0,0	63:0:0:0:4,4:59,59:0,0:0,0
10	19799939	.	A	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1473|C10orf112|protein_coding|CODING|ENST00000454679|17|1),INTRON(MODIFIER||||1486|C10orf112|protein_coding|CODING|ENST00000377266|18|1),INTRON(MODIFIER||||350|C10orf112|protein_coding|CODING|ENST00000455457|3|1),INTRON(MODIFIER|||||C10orf112|processed_transcript|CODING|ENST00000492202|4|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:0:0:0:29,29:0,0:0,0:0,0	73:1:0:0:66,67:1,1:5,5:0,0
10	23930421	.	C	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:0:0:0:0,0:35,35:0,0:0,0	79:1:0:0:0,0:72,72:0,1:6,6
10	27192014	.	T	A	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:0:0:0:0,0:0,0:0,0:35,35	73:2:0:0:8,9:1,1:0,0:62,63
10	30683161	.	C	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:0:0:0:0,0:37,37:0,0:0,0	78:0:0:0:0,0:69,69:0,0:9,9
10	32545301	.	A	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:5:0:0:32,37:0,1:0,0:0,0	60:1:0:0:52,53:0,0:0,0:7,7
10	33201205	.	T	C	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||798|ITGB1|protein_coding|CODING|ENST00000302278|11|1),INTRON(MODIFIER||||798|ITGB1|protein_coding|CODING|ENST00000396033|11|1),INTRON(MODIFIER||||801|ITGB1|protein_coding|CODING|ENST00000423113|10|1),INTRON(MODIFIER||||825|ITGB1|protein_coding|CODING|ENST00000374956|11|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:0:0:0:0,0:0,0:0,0:38,38	68:0:0:0:0,0:7,7:2,2:59,59
10	33609532	.	T	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=EXON(MODIFIER|||||RP11-90B22.2|antisense|NON_CODING|ENST00000443179|2|1),INTRON(MODIFIER||||609|NRP1|protein_coding|CODING|ENST00000374821|2|1),INTRON(MODIFIER||||641|NRP1|protein_coding|CODING|ENST00000374816|2|1),INTRON(MODIFIER||||644|NRP1|protein_coding|CODING|ENST00000374822|2|1),INTRON(MODIFIER||||704|NRP1|protein_coding|CODING|ENST00000374823|2|1),INTRON(MODIFIER||||735|NRP1|protein_coding|CODING|ENST00000374875|2|1),INTRON(MODIFIER||||906|NRP1|protein_coding|CODING|ENST00000395995|2|1),INTRON(MODIFIER||||923|NRP1|protein_coding|CODING|ENST00000265371|3|1),INTRON(MODIFIER||||923|NRP1|protein_coding|CODING|ENST00000374867|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:0:0:0:0,0:0,0:0,0:31,31	67:0:0:0:4,4:0,0:0,0:63,63
10	34248296	.	G	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:2:0:0:0,0:0,0:30,32:0,0	62:3:0:0:5,5:0,0:54,57:0,0
10	34435142	.	T	C	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1244|PARD3|protein_coding|CODING|ENST00000374794|18|1),INTRON(MODIFIER||||1266|PARD3|protein_coding|CODING|ENST00000545260|20|1),INTRON(MODIFIER||||1296|PARD3|protein_coding|CODING|ENST00000374790|20|1),INTRON(MODIFIER||||1310|PARD3|protein_coding|CODING|ENST00000350537|21|1),INTRON(MODIFIER||||1319|PARD3|protein_coding|CODING|ENST00000346874|21|1),INTRON(MODIFIER||||1340|PARD3|protein_coding|CODING|ENST00000545693|21|1),INTRON(MODIFIER||||1353|PARD3|protein_coding|CODING|ENST00000374788|22|1),INTRON(MODIFIER||||1356|PARD3|protein_coding|CODING|ENST00000374789|22|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:0:0:0:0,0:0,0:0,0:37,37	76:1:0:0:0,0:6,6:0,0:69,70
10	34435158	.	A	G	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1244|PARD3|protein_coding|CODING|ENST00000374794|18|1),INTRON(MODIFIER||||1266|PARD3|protein_coding|CODING|ENST00000545260|20|1),INTRON(MODIFIER||||1296|PARD3|protein_coding|CODING|ENST00000374790|20|1),INTRON(MODIFIER||||1310|PARD3|protein_coding|CODING|ENST00000350537|21|1),INTRON(MODIFIER||||1319|PARD3|protein_coding|CODING|ENST00000346874|21|1),INTRON(MODIFIER||||1340|PARD3|protein_coding|CODING|ENST00000545693|21|1),INTRON(MODIFIER||||1353|PARD3|protein_coding|CODING|ENST00000374788|22|1),INTRON(MODIFIER||||1356|PARD3|protein_coding|CODING|ENST00000374789|22|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:1:0:0:37,38:0,0:0,0:0,0	76:1:0:0:68,69:0,0:6,6:1,1
10	34720701	.	G	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1001|PARD3|protein_coding|CODING|ENST00000374773|5|1),INTRON(MODIFIER||||1031|PARD3|protein_coding|CODING|ENST00000340077|5|1),INTRON(MODIFIER||||1244|PARD3|protein_coding|CODING|ENST00000374794|4|1),INTRON(MODIFIER||||1266|PARD3|protein_coding|CODING|ENST00000545260|4|1),INTRON(MODIFIER||||1296|PARD3|protein_coding|CODING|ENST00000374790|4|1),INTRON(MODIFIER||||1310|PARD3|protein_coding|CODING|ENST00000350537|5|1),INTRON(MODIFIER||||1319|PARD3|protein_coding|CODING|ENST00000346874|5|1),INTRON(MODIFIER||||1340|PARD3|protein_coding|CODING|ENST00000545693|5|1),INTRON(MODIFIER||||1353|PARD3|protein_coding|CODING|ENST00000374788|5|1),INTRON(MODIFIER||||1356|PARD3|protein_coding|CODING|ENST00000374789|5|1),INTRON(MODIFIER||||988|PARD3|protein_coding|CODING|ENST00000374776|5|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:1:0:0:0,0:0,0:35,37:0,0	52:3:0:0:0,0:0,0:45,49:4,4
10	35340013	.	A	G	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||215|CUL2|protein_coding|CODING|ENST00000421317|5|1),INTRON(MODIFIER||||688|CUL2|protein_coding|CODING|ENST00000374754|5|1),INTRON(MODIFIER||||706|CUL2|protein_coding|CODING|ENST00000374742|5|1),INTRON(MODIFIER||||706|CUL2|protein_coding|CODING|ENST00000374746|4|1),INTRON(MODIFIER||||745|CUL2|protein_coding|CODING|ENST00000374748|6|1),INTRON(MODIFIER||||745|CUL2|protein_coding|CODING|ENST00000374749|5|1),INTRON(MODIFIER||||745|CUL2|protein_coding|CODING|ENST00000374751|5|1),INTRON(MODIFIER||||764|CUL2|protein_coding|CODING|ENST00000537177|5|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:0:0:0:37,38:0,0:0,0:0,0	74:0:0:0:68,68:1,1:5,6:0,0
10	35759165	.	A	G	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||208|CCNY|protein_coding|CODING|ENST00000456784|1|1),INTRON(MODIFIER||||287|CCNY|protein_coding|CODING|ENST00000265375|1|1),INTRON(MODIFIER||||287|CCNY|protein_coding|CODING|ENST00000374706|3|1),INTRON(MODIFIER||||316|CCNY|protein_coding|CODING|ENST00000339497|1|1),INTRON(MODIFIER||||341|CCNY|protein_coding|CODING|ENST00000374704|1|1),INTRON(MODIFIER||||341|CCNY|protein_coding|CODING|ENST00000537547|2|1),INTRON(MODIFIER|||||CCNY|processed_transcript|CODING|ENST00000470025|1|1),INTRON(MODIFIER|||||CCNY|processed_transcript|CODING|ENST00000490012|6|1),INTRON(MODIFIER|||||CCNY|processed_transcript|CODING|ENST00000492478|2|1),INTRON(MODIFIER|||||CCNY|processed_transcript|CODING|ENST00000493157|5|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:0:0:0:32,32:0,0:0,0:0,0	82:0:0:0:76,76:0,0:6,6:0,0
10	37563900	.	G	A	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||ATP8A2P1|unprocessed_pseudogene|NON_CODING|ENST00000420453|4|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:0:0:0:0,0:0,0:37,37:0,0	77:2:0:0:5,5:0,0:70,72:0,0
10	37944688	.	C	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:0:0:0:0,0:31,31:0,0:0,0	56:1:0:0:5,5:50,51:0,0:0,0
10	38389685	.	G	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||561|ZNF37A|protein_coding|CODING|ENST00000351773|5|1),INTRON(MODIFIER||||561|ZNF37A|protein_coding|CODING|ENST00000361085|4|1),INTRON(MODIFIER|||||ZNF37A|processed_transcript|CODING|ENST00000463776|2|1),INTRON(MODIFIER|||||ZNF37A|processed_transcript|CODING|ENST00000477790|1|1),INTRON(MODIFIER|||||ZNF37A|processed_transcript|CODING|ENST00000479469|5|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	27:0:0:0:0,0:0,0:27,27:0,0	70:1:0:0:7,7:0,0:62,65:0,0
10	38470932	.	T	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||RP11-508N22.9|lincRNA|NON_CODING|ENST00000419779||1),INTRON(MODIFIER|||||RP11-508N22.8|processed_transcript|NON_CODING|ENST00000423162|2|1),UPSTREAM(MODIFIER|||||RP11-508N22.10|processed_pseudogene|NON_CODING|ENST00000453482||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	27:0:0:0:0,0:0,0:0,0:27,27	90:0:0:0:0,0:8,9:0,0:82,82
10	38776490	rs189649393	A	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=38776490;dbSNPBuildID=135;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:11:0:0:27,96:0,1:0,2:0,0	122:15:0:0:101,246:0,0:6,17:0,2
10	38870029	.	A	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	48:2:0:0:46,51:0,0:0,0:0,1	77:7:0:0:64,75:0,0:0,0:6,8
10	38873535	.	C	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	73:5:0:0:0,4:67,105:1,1:0,3	121:7:0:0:5,9:103,186:0,0:6,13
10	38893331	rs113502638	C	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->AC;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||ABCD1P2|unprocessed_pseudogene|NON_CODING|ENST00000429313||1);RSPOS=38893331;dbSNPBuildID=132;SSR=0;SAO=0;VP=050100000009000102000100;WGT=1;VC=SNV;SLO;CFL;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	45:0:0:0:0,1:45,59:0,0:0,0	113:4:0:0:7,9:102,124:0,1:0,0
10	38909830	rs75815045	T	C	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=38909830;dbSNPBuildID=131;SSR=0;SAO=0;VP=050000000001040102000100;WGT=1;VC=SNV;VLD;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:0:0:0:0,0:0,0:0,0:37,38	65:0:0:0:0,0:6,7:0,0:59,59
10	38935840	.	T	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||PABPC1P12|processed_pseudogene|NON_CODING|ENST00000428454||1),INTRON(MODIFIER|||||SLC9B1P3|unprocessed_pseudogene|NON_CODING|ENST00000452667|8|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:0:0:0:0,0:0,0:0,0:29,29	72:0:0:0:5,6:0,0:0,0:67,68
10	39048596	rs199851530	A	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=39048596;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:1:0:0:29,32:0,1:0,0:0,0	82:1:0:0:75,81:0,0:6,12:0,1
10	39060787	rs61840316	G	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=39060787;dbSNPBuildID=129;SSR=0;SAO=0;VP=050000000001000002000100;WGT=1;VC=SNV;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	50:4:0:0:0,4:0,1:46,74:0,0	143:10:0:0:15,20:0,0:118,189:0,0
10	39092746	rs75781427	A	T	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=39092746;dbSNPBuildID=131;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	46:3:0:0:43,82:0,0:0,1:0,3	98:3:0:0:85,162:0,0:0,0:10,19
10	39094900	.	G	T	.	PASS	NT=ref;QSS=30;QSS_NT=30;SGT=GG->GT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	67:5:1:0:0,0:0,0:62,208:0,7	130:21:2:0:1,2:1,2:98,368:9,45
10	39125035	rs75582709	C	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->AC;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=39125035;dbSNPBuildID=131;SSR=0;SAO=0;VP=050000000001000102000100;WGT=1;VC=SNV;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:1:0:0:0,2:32,32:0,0:0,4	73:7:0:0:7,20:58,65:0,0:1,10
10	39130217	rs200499210	G	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=39130217;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:7:0:0:0,0:0,0:28,70:0,0	96:17:0:0:7,8:0,1:72,167:0,0
10	42362823	.	T	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=TT->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	44:8:0:0:2,5:0,6:0,0:34,112	130:21:0:0:0,9:7,26:0,0:102,264
10	42368146	.	C	G	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=CC->CG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	54:5:0:0:0,0:49,80:0,1:0,2	104:6:0:0:0,0:89,162:7,7:2,2
10	42372455	.	T	C	.	PASS	NT=ref;QSS=23;QSS_NT=23;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	66:6:0:0:2,4:0,1:0,0:58,113	157:27:0:0:1,1:10,16:0,0:119,260
10	42380806	.	G	T	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	77:19:1:0:0,0:0,0:56,187:2,9	195:41:2:0:1,2:0,4:139,410:14,35
10	42536204	rs200425387	A	G	.	PASS	NT=ref;QSS=35;QSS_NT=35;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=42536204;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	73:2:0:0:71,85:0,0:0,1:0,0	174:2:0:0:156,182:0,0:16,16:0,0
10	42610264	rs61845495	G	A	.	PASS	NT=ref;QSS=23;QSS_NT=23;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=42610264;dbSNPBuildID=129;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	63:1:0:0:1,1:0,0:61,77:0,0	150:0:0:0:10,16:0,0:140,165:0,0
10	42613924	.	T	G	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=TT->GT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	44:0:0:0:0,0:0,0:0,2:44,52	88:9:0:0:0,0:0,0:5,16:74,100
10	42614217	.	G	A	.	PASS	NT=ref;QSS=33;QSS_NT=33;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	70:1:0:0:0,0:0,0:67,80:2,2	151:1:0:0:9,11:0,0:140,178:1,1
10	42616476	.	A	C	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	50:2:0:0:48,56:0,0:0,1:0,0	112:1:0:0:105,121:6,6:0,2:0,0
10	42616846	.	T	C	.	PASS	NT=ref;QSS=23;QSS_NT=23;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	55:1:0:0:0,0:0,1:0,0:54,63	106:0:0:0:0,0:6,7:0,0:100,117
10	42617267	.	C	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	63:13:0:0:0,0:47,78:1,4:2,3	164:19:4:0:12,14:130,185:2,3:1,5
10	42617363	.	C	T	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=CC->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	62:10:0:0:0,0:52,86:0,1:0,4	189:34:0:0:0,0:139,224:4,6:12,22
10	42617374	.	C	T	.	PASS	NT=ref;QSS=24;QSS_NT=24;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	59:6:0:0:2,6:51,78:0,0:0,3	192:27:0:0:10,12:143,217:0,0:12,17
10	42622948	.	T	A	.	PASS	NT=ref;QSS=42;QSS_NT=42;SGT=TT->AT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	95:3:0:0:0,3:0,0:0,0:92,119	237:7:0:0:12,19:0,0:0,1:218,270
10	42623275	.	A	T	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	46:4:0:0:42,66:0,0:0,0:0,0	132:11:0:0:114,166:0,2:0,0:7,7
10	42638055	rs201574514	A	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=42638055;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:0:0:0:30,30:0,0:0,0:0,1	60:1:0:0:51,51:0,0:0,0:8,15
10	42639266	.	G	T	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:1:0:0:0,0:0,0:39,43:0,0	101:0:0:0:0,0:0,0:92,98:9,9
10	42659792	.	G	C	.	PASS	NT=ref;QSS=23;QSS_NT=23;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	45:0:0:0:0,0:0,1:45,55:0,0	171:6:0:0:0,0:9,11:156,182:0,0
10	42675055	.	C	A	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	42:1:0:0:0,0:41,44:0,0:0,0	82:1:0:0:6,6:75,79:0,0:0,0
10	42707296	rs150346013	A	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=42707296;dbSNPBuildID=134;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:0:0:0:37,37:0,0:0,0:0,1	88:5:0:0:75,80:0,0:1,2:7,9
10	42712530	.	C	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	86:2:0:0:0,1:84,95:0,0:0,2	203:2:0:0:0,0:191,211:0,0:10,11
10	42741276	rs201305529	T	C	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=42741276;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:0:0:0:0,0:0,0:0,0:34,38	48:0:0:0:0,0:5,6:0,0:43,47
10	42758142	.	G	A	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=GG->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	64:0:0:0:0,1:0,0:64,70:0,0	162:0:0:0:8,13:0,0:154,168:0,1
10	42778087	.	G	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||PABPC1P8|processed_pseudogene|NON_CODING|ENST00000452851||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:0:0:0:0,0:0,0:38,38:0,0	76:1:0:0:0,0:5,8:69,70:1,1
10	42814081	rs202096594	A	C	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=42814081;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	50:6:11:0:42,88:0,2:2,2:0,0	94:21:14:0:66,155:7,12:0,1:0,2
10	42855918	.	C	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:0:0:0:0,0:39,39:0,0:1,1	97:3:0:0:0,1:81,83:0,0:13,15
10	42855945	rs3981417	C	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=42855945;dbSNPBuildID=108;SSR=0;SAO=0;VP=050100080001000002000100;GENEINFO=LOC441666:441666;WGT=1;VC=SNV;SLO;INT;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:0:0:0:0,0:35,35:0,0:0,0	96:3:0:0:0,0:88,91:5,6:0,0
10	42896025	.	A	G	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:0:0:0:36,36:0,0:0,0:0,0	82:1:0:0:77,78:0,0:4,4:0,0
10	43020548	.	G	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||ZNF37BP|processed_transcript|NON_CODING|ENST00000435805|3|1),INTRON(MODIFIER|||||ZNF37BP|processed_transcript|NON_CODING|ENST00000452075|5|1),INTRON(MODIFIER|||||ZNF37BP|processed_transcript|NON_CODING|ENST00000473592|2|1),UPSTREAM(MODIFIER|||||ZNF37BP|transcribed_processed_pseudogene|NON_CODING|ENST00000452306||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:1:0:0:0,0:0,0:35,36:0,0	61:1:0:0:0,0:0,0:56,58:4,4
10	43348951	.	T	C	.	PASS	NT=ref;QSS=25;QSS_NT=25;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	50:0:0:0:0,0:0,0:0,0:50,50	74:1:0:0:0,0:6,6:0,0:67,68
10	43738657	.	T	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||481|RASGEF1A|protein_coding|CODING|ENST00000395810|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	27:0:0:0:0,0:0,0:0,0:27,27	53:4:0:0:0,0:8,11:1,1:40,42
10	43926034	.	T	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	28:1:0:0:0,0:0,0:0,0:27,28	90:0:0:0:0,0:8,9:0,0:82,83
10	44363276	.	G	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-168P8.2|lincRNA|NON_CODING|ENST00000431737|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:1:0:0:0,0:0,0:28,29:0,0	87:3:0:0:4,4:0,0:80,83:0,0
10	44807894	.	G	A	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||90|CXCL12|protein_coding|CODING|ENST00000395795|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:0:0:0:0,0:0,0:35,35:0,0	78:1:0:0:5,5:0,0:72,73:0,0
10	47083232	.	G	A	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=GG->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER|||||XXyac-YR14BB7.1|processed_transcript|NON_CODING|ENST00000503031|2|1),UPSTREAM(MODIFIER||||375|PPYR1|protein_coding|CODING|ENST00000374312||1),UPSTREAM(MODIFIER||||375|PPYR1|protein_coding|CODING|ENST00000395716||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	70:1:0:0:0,0:0,0:69,70:0,0	142:1:0:0:6,6:0,0:135,140:0,0
10	48411116	.	C	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||429|GDF2|protein_coding|CODING|ENST00000249598||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:1:1:0:0,0:32,36:0,0:0,0	57:7:0:0:0,0:46,64:0,0:4,4
10	48411320	.	T	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||429|GDF2|protein_coding|CODING|ENST00000249598||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:2:0:0:0,0:0,0:0,1:33,36	60:4:0:0:0,0:7,9:1,1:48,50
10	50177004	.	T	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=EXON(MODIFIER|||||WDFY4|processed_transcript|CODING|ENST00000465910|6|1),INTRON(MODIFIER||||1042|WDFY4|protein_coding|CODING|ENST00000413659|44|1),INTRON(MODIFIER||||3184|WDFY4|protein_coding|CODING|ENST00000325239|54|1),UPSTREAM(MODIFIER|||||WDFY4|processed_transcript|CODING|ENST00000497480||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:0:0:0:0,0:0,0:0,0:38,38	74:1:0:0:4,4:0,0:2,3:67,67
10	51120462	.	G	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||RP11-526K21.2|processed_pseudogene|NON_CODING|ENST00000413846||1),INTRON(MODIFIER||||491|PARG|protein_coding|CODING|ENST00000402038|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:0:0:0:0,0:1,1:29,29:0,0	75:1:0:0:5,5:0,0:69,71:0,0
10	52777697	.	C	T	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||659|PRKG1|protein_coding|CODING|ENST00000373985|1|1),INTRON(MODIFIER||||671|PRKG1|protein_coding|CODING|ENST00000401604|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:1:0:0:0,0:38,38:0,1:0,0	60:0:0:0:0,0:53,54:1,1:6,6
10	52970661	.	A	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||181|PRKG1|protein_coding|CODING|ENST00000373976|1|1),INTRON(MODIFIER||||659|PRKG1|protein_coding|CODING|ENST00000373985|2|1),INTRON(MODIFIER||||671|PRKG1|protein_coding|CODING|ENST00000401604|2|1),INTRON(MODIFIER||||686|PRKG1|protein_coding|CODING|ENST00000373980|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:1:0:0:32,33:0,0:0,0:0,0	81:0:0:0:76,76:5,5:0,0:0,0
10	54538656	.	G	A	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	42:0:0:0:0,0:0,0:42,43:0,0	78:0:0:0:7,7:0,0:71,71:0,0
10	56262004	.	T	C	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1150|PCDH15|protein_coding|CODING|ENST00000409834|2|1),INTRON(MODIFIER||||1539|PCDH15|protein_coding|CODING|ENST00000395438|3|1),INTRON(MODIFIER||||1681|PCDH15|protein_coding|CODING|ENST00000414778|5|1),INTRON(MODIFIER||||1684|PCDH15|protein_coding|CODING|ENST00000373965|3|1),INTRON(MODIFIER||||1785|PCDH15|protein_coding|CODING|ENST00000395445|3|1),INTRON(MODIFIER||||1886|PCDH15|protein_coding|CODING|ENST00000437009|3|1),INTRON(MODIFIER||||1915|PCDH15|protein_coding|CODING|ENST00000395432|3|1),INTRON(MODIFIER||||1932|PCDH15|protein_coding|CODING|ENST00000395433|2|1),INTRON(MODIFIER||||1952|PCDH15|protein_coding|CODING|ENST00000395430|3|1),INTRON(MODIFIER||||1955|PCDH15|protein_coding|CODING|ENST00000320301|3|1),INTRON(MODIFIER||||1957|PCDH15|protein_coding|CODING|ENST00000361849|3|1),INTRON(MODIFIER||||650|PCDH15|protein_coding|CODING|ENST00000395442|3|1),INTRON(MODIFIER||||719|PCDH15|protein_coding|CODING|ENST00000395440|3|1),INTRON(MODIFIER||||809|PCDH15|protein_coding|CODING|ENST00000373957|5|1),INTRON(MODIFIER||||91|PCDH15|protein_coding|CODING|ENST00000458638|5|1),INTRON(MODIFIER||||961|PCDH15|protein_coding|CODING|ENST00000373955|3|1),INTRON(MODIFIER||||981|PCDH15|protein_coding|CODING|ENST00000395446|3|1),INTRON(MODIFIER|||||PCDH15|nonsense_mediated_decay|CODING|ENST00000373956|2|1),INTRON(MODIFIER|||||PCDH15|nonsense_mediated_decay|CODING|ENST00000414367|3|1),INTRON(MODIFIER|||||PCDH15|nonsense_mediated_decay|CODING|ENST00000448885|3|1),INTRON(MODIFIER|||||PCDH15|processed_transcript|CODING|ENST00000495484|1|1),INTRON(MODIFIER|||||RP11-257I14.1|processed_transcript|NON_CODING|ENST00000422842|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:1:0:0:0,0:0,0:0,0:38,39	72:1:0:0:0,0:6,6:0,0:65,66
10	59866327	.	G	A	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=EXON(MODIFIER|||||RP11-123G9.1|processed_pseudogene|NON_CODING|ENST00000418296|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:2:0:0:0,0:0,0:37,37:0,2	90:1:0:0:8,9:1,1:80,81:0,0
10	60676419	.	A	G	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:2:0:0:32,34:0,0:0,0:0,0	74:2:0:0:60,61:2,2:10,11:0,0
10	62941460	.	G	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:0:0:0:0,0:0,0:30,30:0,0	64:3:0:0:0,0:0,0:57,60:4,4
10	63818133	.	A	C	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1188|ARID5B|protein_coding|CODING|ENST00000279873|6|1),INTRON(MODIFIER||||945|ARID5B|protein_coding|CODING|ENST00000309334|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	42:1:0:0:41,42:0,0:0,0:0,0	83:0:0:0:78,78:5,5:0,0:0,0
10	64045547	.	G	C	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||RP11-120C12.3|lincRNA|NON_CODING|ENST00000442753||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:1:0:0:0,0:0,0:38,39:0,0	76:1:0:0:0,0:7,7:68,69:0,0
10	64045562	.	G	C	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||RP11-120C12.3|lincRNA|NON_CODING|ENST00000442753||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:1:0:0:0,0:0,0:37,38:0,0	84:1:0:0:0,0:7,7:76,77:0,0
10	64843442	.	G	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:0:0:0:0,0:0,0:35,35:0,0	78:1:0:0:7,7:0,0:70,71:0,0
10	65352416	.	T	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||240|REEP3|protein_coding|CODING|ENST00000298249|2|1),INTRON(MODIFIER||||255|REEP3|protein_coding|CODING|ENST00000373758|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:1:0:0:0,0:0,0:0,0:28,30	65:2:0:0:0,0:9,10:1,2:53,54
10	67991225	.	C	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||895|CTNNA3|protein_coding|CODING|ENST00000373744|12|1),INTRON(MODIFIER||||895|CTNNA3|protein_coding|CODING|ENST00000433211|13|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:0:0:0:0,0:35,35:0,0:0,0	79:1:0:0:0,0:73,73:0,0:5,6
10	68341112	.	T	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||895|CTNNA3|protein_coding|CODING|ENST00000373744|9|1),INTRON(MODIFIER||||895|CTNNA3|protein_coding|CODING|ENST00000433211|10|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:1:0:0:0,0:0,0:0,0:31,32	76:1:0:0:0,0:4,4:0,0:71,72
10	70471586	.	A	C	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||snoU13|snoRNA|NON_CODING|ENST00000516117||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:2:0:0:38,39:0,0:0,1:0,0	64:0:0:0:59,59:5,5:0,0:0,0
10	71056314	.	G	A	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||HK1|processed_transcript|CODING|ENST00000488644||1),DOWNSTREAM(MODIFIER|||||RP11-227H15.7|processed_pseudogene|NON_CODING|ENST00000435088||1),INTRON(MODIFIER||||113|HK1|protein_coding|CODING|ENST00000421088|3|1),INTRON(MODIFIER||||138|HK1|protein_coding|CODING|ENST00000450646|4|1),INTRON(MODIFIER||||905|HK1|protein_coding|CODING|ENST00000360289|4|1),INTRON(MODIFIER||||921|HK1|protein_coding|CODING|ENST00000404387|2|1),INTRON(MODIFIER||||952|HK1|protein_coding|CODING|ENST00000448642|6|1),INTRON(MODIFIER|||||HK1|processed_transcript|CODING|ENST00000464803|4|1),INTRON(MODIFIER|||||HK1|processed_transcript|CODING|ENST00000476368|5|1),INTRON(MODIFIER|||||HK1|processed_transcript|CODING|ENST00000479594|5|1),INTRON(MODIFIER|||||HK1|processed_transcript|CODING|ENST00000480047|4|1),INTRON(MODIFIER|||||HK1|processed_transcript|CODING|ENST00000483054|4|1),INTRON(MODIFIER|||||HK1|processed_transcript|CODING|ENST00000483077|4|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:1:0:0:0,0:0,0:39,40:0,0	60:1:0:0:6,6:0,0:53,54:0,0
10	71998525	.	G	A	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||PPA1|processed_transcript|CODING|ENST00000495346||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	45:6:0:0:0,1:0,0:39,49:0,0	62:8:0:0:6,8:0,1:48,60:0,0
10	73538009	rs181611778	G	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|Gtc/Atc|V1714I|3357|CDH23|protein_coding|CODING|ENST00000224721|39|1),UPSTREAM(MODIFIER||||311|C10orf54|protein_coding|CODING|ENST00000394957||1);RSPOS=73538009;GMAF=0.0005;dbSNPBuildID=135;SSR=0;SAO=0;VP=050200000a05000014000100;GENEINFO=CDH23:64072;WGT=1;VC=SNV;S3D;NSM;REF;ASP;KGPhase1;KGPROD	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:0:0:0:0,0:1,1:29,29:0,0	62:1:0:0:8,8:0,0:53,54:0,0
10	73635108	.	T	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||RP11-472G21.2|lincRNA|NON_CODING|ENST00000441348||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:1:0:0:0,0:0,0:0,0:29,30	66:0:0:0:6,6:0,0:0,0:60,61
10	73635673	.	C	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->AC;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||RP11-472G21.2|lincRNA|NON_CODING|ENST00000441348||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	46:4:0:0:0,2:42,54:0,0:0,0	82:2:0:0:4,7:75,91:0,2:1,1
10	73685888	.	T	G	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:1:0:0:0,0:0,0:0,0:28,31	56:7:0:0:0,0:0,0:8,11:41,49
10	74849856	.	T	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||516|P4HA1|protein_coding|CODING|ENST00000440381|1|1),INTRON(MODIFIER||||534|P4HA1|protein_coding|CODING|ENST00000263556|1|1),INTRON(MODIFIER||||534|P4HA1|protein_coding|CODING|ENST00000307116|1|1),INTRON(MODIFIER||||534|P4HA1|protein_coding|CODING|ENST00000373008|1|1),INTRON(MODIFIER||||534|P4HA1|protein_coding|CODING|ENST00000394890|1|1),INTRON(MODIFIER||||534|P4HA1|protein_coding|CODING|ENST00000412021|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	28:2:0:0:0,0:0,0:0,1:26,28	57:3:0:0:0,0:2,2:7,9:45,46
10	75445752	rs200814574	T	A	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||663|AGAP5|protein_coding|CODING|ENST00000443782|3|1),INTRON(MODIFIER||||686|AGAP5|protein_coding|CODING|ENST00000374094|4|1),INTRON(MODIFIER|||||RP11-464F9.1|processed_transcript|NON_CODING|ENST00000399449|15|1);RSPOS=75445752;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000080005000002000100;WGT=1;VC=SNV;INT;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:2:0:0:0,0:0,0:0,0:35,37	88:1:0:0:8,13:0,0:0,0:79,79
10	75455527	.	A	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||RP11-464F9.1|processed_transcript|NON_CODING|ENST00000580790||1),INTRON(MODIFIER||||663|AGAP5|protein_coding|CODING|ENST00000443782|1|1),INTRON(MODIFIER||||686|AGAP5|protein_coding|CODING|ENST00000374094|2|1),INTRON(MODIFIER|||||RP11-464F9.1|processed_transcript|NON_CODING|ENST00000399449|13|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:0:0:0:30,30:0,0:0,0:0,1	76:5:0:0:63,66:0,0:0,0:8,14
10	80609957	.	A	C	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:0:0:0:34,34:0,0:0,0:0,0	91:0:0:0:84,84:7,7:0,0:0,0
10	80637538	.	C	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	26:0:0:0:0,0:26,27:0,0:0,0	65:1:0:0:0,0:57,58:7,7:0,0
10	81266737	.	C	G	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=CC->CG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=EXON(MODIFIER|||||RP11-342M3.2|processed_pseudogene|NON_CODING|ENST00000538322|3|1),UPSTREAM(MODIFIER|||||RP11-342M3.1|processed_transcript|NON_CODING|ENST00000456546||1),UPSTREAM(MODIFIER|||||RP11-342M3.2|processed_pseudogene|NON_CODING|ENST00000446835||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:1:0:0:1,1:31,31:0,1:0,0	77:3:0:0:2,5:58,66:14,18:0,0
10	81615797	rs145889135	C	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||RP11-182L21.4|processed_pseudogene|NON_CODING|ENST00000456716||1);RSPOS=81615797;dbSNPBuildID=134;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:1:0:0:0,0:33,35:0,0:0,0	65:1:0:0:0,0:58,59:0,0:6,8
10	83011138	.	G	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:0:0:0:0,0:0,0:33,33:0,0	85:0:0:0:5,5:0,0:80,80:0,0
10	83055034	.	T	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:0:0:0:0,0:0,0:0,0:32,32	88:1:0:0:0,1:4,4:0,0:83,83
10	83180041	.	C	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:0:0:0:0,0:31,31:0,0:0,0	77:1:0:0:0,0:69,70:0,0:7,7
10	83455537	.	T	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	27:0:0:0:0,0:0,0:0,0:27,27	60:0:0:0:0,0:0,0:6,6:54,54
10	83631786	.	C	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER||||696|NRG3|protein_coding|CODING|ENST00000372141||1),UPSTREAM(MODIFIER||||720|NRG3|protein_coding|CODING|ENST00000404547||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:0:0:0:0,0:34,35:0,0:0,0	76:2:0:0:2,2:67,69:0,0:5,5
10	85548585	.	G	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:0:0:0:0,0:0,0:32,32:0,0	80:0:0:0:5,5:0,0:75,75:0,0
10	86555037	.	A	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:0:0:0:30,30:0,0:0,0:0,0	80:0:0:0:76,76:0,0:4,4:0,0
10	86834409	.	T	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:0:0:0:0,0:0,0:0,0:30,30	74:0:0:0:0,0:4,4:0,0:70,70
10	88142812	rs12357357	C	T	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=88142812;dbSNPBuildID=120;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:0:0:0:0,0:37,37:0,0:0,0	68:4:0:0:0,0:54,55:0,0:10,14
10	88182370	.	G	A	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:0:0:0:0,0:0,0:31,31:0,0	63:1:0:0:10,11:0,0:52,52:0,0
10	88698950	.	A	G	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||MMRN2|processed_transcript|CODING|ENST00000488950||1),INTRON(MODIFIER||||949|MMRN2|protein_coding|CODING|ENST00000372027|6|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:2:0:0:36,38:0,0:0,0:0,0	60:1:0:0:50,57:0,0:9,10:0,0
10	90373707	.	G	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||RP11-425M17.3|processed_pseudogene|NON_CODING|ENST00000433316||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:0:0:0:0,0:0,0:29,29:0,0	65:1:0:0:0,0:5,5:59,60:0,0
10	91048713	.	T	C	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||LIPA|processed_transcript|CODING|ENST00000463623||1),DOWNSTREAM(MODIFIER|||||RP11-149I23.3|antisense|NON_CODING|ENST00000437032||1),INTRON(MODIFIER||||218|LIPA|protein_coding|CODING|ENST00000282673|1|1),INTRON(MODIFIER||||343|LIPA|protein_coding|CODING|ENST00000371837|2|1),INTRON(MODIFIER||||399|LIPA|protein_coding|CODING|ENST00000371829|2|1),INTRON(MODIFIER||||399|LIPA|protein_coding|CODING|ENST00000541980|1|1),INTRON(MODIFIER||||401|LIPA|protein_coding|CODING|ENST00000425287|2|1),INTRON(MODIFIER|||||LIPA|processed_transcript|CODING|ENST00000487618|3|1),INTRON(MODIFIER|||||RP11-149I23.3|antisense|NON_CODING|ENST00000354541|2|1),INTRON(MODIFIER|||||RP11-149I23.3|antisense|NON_CODING|ENST00000444849|2|1),INTRON(MODIFIER|||||RP11-149I23.3|antisense|NON_CODING|ENST00000448897|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:2:0:0:1,1:0,0:0,1:37,38	69:1:0:0:0,0:6,12:0,0:62,63
10	91048714	.	G	T	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||LIPA|processed_transcript|CODING|ENST00000463623||1),DOWNSTREAM(MODIFIER|||||RP11-149I23.3|antisense|NON_CODING|ENST00000437032||1),INTRON(MODIFIER||||218|LIPA|protein_coding|CODING|ENST00000282673|1|1),INTRON(MODIFIER||||343|LIPA|protein_coding|CODING|ENST00000371837|2|1),INTRON(MODIFIER||||399|LIPA|protein_coding|CODING|ENST00000371829|2|1),INTRON(MODIFIER||||399|LIPA|protein_coding|CODING|ENST00000541980|1|1),INTRON(MODIFIER||||401|LIPA|protein_coding|CODING|ENST00000425287|2|1),INTRON(MODIFIER|||||LIPA|processed_transcript|CODING|ENST00000487618|3|1),INTRON(MODIFIER|||||RP11-149I23.3|antisense|NON_CODING|ENST00000354541|2|1),INTRON(MODIFIER|||||RP11-149I23.3|antisense|NON_CODING|ENST00000444849|2|1),INTRON(MODIFIER|||||RP11-149I23.3|antisense|NON_CODING|ENST00000448897|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:2:0:0:0,0:0,0:38,40:0,0	69:1:0:0:0,0:0,0:62,63:6,12
10	91048719	.	A	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=DOWNSTREAM(MODIFIER|||||LIPA|processed_transcript|CODING|ENST00000463623||1),DOWNSTREAM(MODIFIER|||||RP11-149I23.3|antisense|NON_CODING|ENST00000437032||1),INTRON(MODIFIER||||218|LIPA|protein_coding|CODING|ENST00000282673|1|1),INTRON(MODIFIER||||343|LIPA|protein_coding|CODING|ENST00000371837|2|1),INTRON(MODIFIER||||399|LIPA|protein_coding|CODING|ENST00000371829|2|1),INTRON(MODIFIER||||399|LIPA|protein_coding|CODING|ENST00000541980|1|1),INTRON(MODIFIER||||401|LIPA|protein_coding|CODING|ENST00000425287|2|1),INTRON(MODIFIER|||||LIPA|processed_transcript|CODING|ENST00000487618|3|1),INTRON(MODIFIER|||||RP11-149I23.3|antisense|NON_CODING|ENST00000354541|2|1),INTRON(MODIFIER|||||RP11-149I23.3|antisense|NON_CODING|ENST00000444849|2|1),INTRON(MODIFIER|||||RP11-149I23.3|antisense|NON_CODING|ENST00000448897|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:2:0:0:38,39:0,0:0,2:0,0	70:0:0:0:63,63:0,0:7,14:0,0
10	92041612	.	T	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:1:0:0:0,0:0,0:0,0:32,33	79:0:0:0:0,0:4,4:0,0:75,75
10	93690795	.	T	C	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1849|BTAF1|protein_coding|CODING|ENST00000265990|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:0:0:0:0,0:0,0:0,0:36,36	81:0:0:0:0,0:8,8:0,0:73,74
10	93764202	.	A	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1849|BTAF1|protein_coding|CODING|ENST00000265990|25|1),INTRON(MODIFIER||||677|BTAF1|protein_coding|CODING|ENST00000544642|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:1:0:0:32,33:0,0:0,1:0,0	71:1:0:0:66,67:0,0:0,0:4,4
10	94024063	.	G	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||684|CPEB3|protein_coding|CODING|ENST00000394210|1|1),INTRON(MODIFIER||||698|CPEB3|protein_coding|CODING|ENST00000265997|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:2:0:0:0,0:0,0:31,33:0,0	68:5:0:0:0,0:0,0:58,64:5,5
10	94024071	.	T	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||684|CPEB3|protein_coding|CODING|ENST00000394210|1|1),INTRON(MODIFIER||||698|CPEB3|protein_coding|CODING|ENST00000265997|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:2:0:0:0,0:0,0:0,0:30,32	68:4:0:0:0,0:6,6:0,0:58,63
10	94394295	.	C	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1056|KIF11|protein_coding|CODING|ENST00000260731|14|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:1:0:0:0,0:29,29:0,1:0,0	79:2:0:0:0,0:71,76:0,0:6,6
10	94396194	.	T	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1056|KIF11|protein_coding|CODING|ENST00000260731|14|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	27:1:0:0:0,0:0,0:0,0:26,27	46:0:0:0:0,0:5,6:0,0:41,42
10	95068139	.	C	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||2048|MYOF|protein_coding|CODING|ENST00000358334|52|1),INTRON(MODIFIER||||2051|MYOF|protein_coding|CODING|ENST00000371502|53|1),INTRON(MODIFIER||||2061|MYOF|protein_coding|CODING|ENST00000359263|53|1),INTRON(MODIFIER||||2061|MYOF|protein_coding|CODING|ENST00000371501|53|1),INTRON(MODIFIER|||||MYOF|processed_transcript|CODING|ENST00000463541|8|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:0:0:0:0,0:30,30:0,0:0,0	72:0:0:0:0,0:66,67:6,6:0,0
10	96333262	.	A	G	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||HELLS|processed_transcript|CODING|ENST00000462057||1),INTRON(MODIFIER||||129|HELLS|protein_coding|CODING|ENST00000394036|6|1),INTRON(MODIFIER||||191|HELLS|protein_coding|CODING|ENST00000419900|7|1),INTRON(MODIFIER||||315|HELLS|protein_coding|CODING|ENST00000394044|7|1),INTRON(MODIFIER||||740|HELLS|protein_coding|CODING|ENST00000394045|7|1),INTRON(MODIFIER||||838|HELLS|protein_coding|CODING|ENST00000348459|7|1),INTRON(MODIFIER||||884|HELLS|protein_coding|CODING|ENST00000371332|7|1),INTRON(MODIFIER||||97|HELLS|protein_coding|CODING|ENST00000239026|8|1),INTRON(MODIFIER|||||HELLS|retained_intron|CODING|ENST00000466552|1|1),UPSTREAM(MODIFIER|||||RP11-119K6.6|processed_transcript|NON_CODING|ENST00000432120||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	42:0:0:0:42,43:0,0:0,0:0,0	73:1:0:0:68,70:0,0:4,4:0,0
10	96535185	.	C	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=EXON(MODIFIER|||||CYP2C19|processed_transcript|CODING|ENST00000464755|8|1),EXON(MODIFIER|||||CYP2C19|processed_transcript|CODING|ENST00000480405|3|1),NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|Cgg/Tgg|R124W|490|CYP2C19|protein_coding|CODING|ENST00000371321|3|1),UPSTREAM(MODIFIER|||||MTND4P19|processed_pseudogene|NON_CODING|ENST00000446659||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:1:0:0:0,0:29,30:0,0:0,0	86:1:0:0:0,0:78,79:0,0:7,7
10	97049809	.	G	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||329|PDLIM1|protein_coding|CODING|ENST00000329399|1|1),INTRON(MODIFIER|||||PDLIM1|processed_transcript|CODING|ENST00000477757|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:1:0:0:0,0:0,0:34,35:0,0	72:0:0:0:0,0:0,0:66,66:6,6
10	97552158	.	C	G	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||306|ENTPD1|protein_coding|CODING|ENST00000371206|1|1),INTRON(MODIFIER||||372|ENTPD1|protein_coding|CODING|ENST00000371203|1|1),INTRON(MODIFIER||||372|ENTPD1|protein_coding|CODING|ENST00000539125|1|1),INTRON(MODIFIER||||402|ENTPD1|protein_coding|CODING|ENST00000543964|1|1),INTRON(MODIFIER||||510|ENTPD1|protein_coding|CODING|ENST00000371205|1|1),INTRON(MODIFIER||||517|ENTPD1|protein_coding|CODING|ENST00000453258|1|1),INTRON(MODIFIER||||522|ENTPD1|protein_coding|CODING|ENST00000371207|1|1),INTRON(MODIFIER|||||ENTPD1|processed_transcript|CODING|ENST00000481316|1|1),INTRON(MODIFIER|||||ENTPD1|processed_transcript|CODING|ENST00000483213|1|1),INTRON(MODIFIER|||||ENTPD1|processed_transcript|CODING|ENST00000488566|1|1),INTRON(MODIFIER|||||RP11-429G19.2|processed_transcript|NON_CODING|ENST00000416301|4|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	41:1:0:0:0,0:40,41:0,0:0,0	84:1:0:0:0,0:77,78:6,6:0,0
10	97569576	.	T	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||306|ENTPD1|protein_coding|CODING|ENST00000371206|1|1),INTRON(MODIFIER||||372|ENTPD1|protein_coding|CODING|ENST00000371203|1|1),INTRON(MODIFIER||||372|ENTPD1|protein_coding|CODING|ENST00000539125|1|1),INTRON(MODIFIER||||402|ENTPD1|protein_coding|CODING|ENST00000543964|1|1),INTRON(MODIFIER||||510|ENTPD1|protein_coding|CODING|ENST00000371205|1|1),INTRON(MODIFIER||||517|ENTPD1|protein_coding|CODING|ENST00000453258|1|1),INTRON(MODIFIER||||522|ENTPD1|protein_coding|CODING|ENST00000371207|1|1),INTRON(MODIFIER|||||ENTPD1|processed_transcript|CODING|ENST00000481316|1|1),INTRON(MODIFIER|||||ENTPD1|processed_transcript|CODING|ENST00000483213|1|1),INTRON(MODIFIER|||||ENTPD1|processed_transcript|CODING|ENST00000488566|1|1),INTRON(MODIFIER|||||RP11-429G19.2|processed_transcript|NON_CODING|ENST00000416301|4|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:1:0:0:0,0:0,0:0,0:29,30	66:6:0:0:0,1:5,8:0,0:55,60
10	97614354	.	G	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||372|ENTPD1|protein_coding|CODING|ENST00000371203|6|1),INTRON(MODIFIER||||372|ENTPD1|protein_coding|CODING|ENST00000539125|5|1),INTRON(MODIFIER||||402|ENTPD1|protein_coding|CODING|ENST00000543964|6|1),INTRON(MODIFIER||||510|ENTPD1|protein_coding|CODING|ENST00000371205|7|1),INTRON(MODIFIER||||517|ENTPD1|protein_coding|CODING|ENST00000453258|7|1),INTRON(MODIFIER||||522|ENTPD1|protein_coding|CODING|ENST00000371207|7|1),INTRON(MODIFIER|||||RP11-429G19.2|processed_transcript|NON_CODING|ENST00000416301|3|1),INTRON(MODIFIER|||||RP11-429G19.3|processed_transcript|NON_CODING|ENST00000433113|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:0:0:0:0,0:0,0:33,34:0,0	83:2:0:0:0,0:0,0:75,76:6,7
10	98645014	.	A	G	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||406|LCOR|protein_coding|CODING|ENST00000540664|2|1),INTRON(MODIFIER||||433|LCOR|protein_coding|CODING|ENST00000356016|2|1),INTRON(MODIFIER||||433|LCOR|protein_coding|CODING|ENST00000371097|2|1),INTRON(MODIFIER||||433|LCOR|protein_coding|CODING|ENST00000371103|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:0:0:0:33,34:0,0:0,0:0,0	87:2:0:0:77,78:1,2:7,7:0,0
10	99660235	.	A	G	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||524|CRTAC1|protein_coding|CODING|ENST00000413387|6|1),INTRON(MODIFIER||||628|CRTAC1|protein_coding|CODING|ENST00000298819|8|1),INTRON(MODIFIER||||637|CRTAC1|protein_coding|CODING|ENST00000309155|7|1),INTRON(MODIFIER||||645|CRTAC1|protein_coding|CODING|ENST00000370591|8|1),INTRON(MODIFIER||||661|CRTAC1|protein_coding|CODING|ENST00000370597|8|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:2:0:0:30,32:1,1:0,1:0,0	82:3:0:0:68,72:0,0:11,14:0,0
10	100981746	.	G	A	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||480|HPSE2|protein_coding|CODING|ENST00000404542|2|1),INTRON(MODIFIER||||534|HPSE2|protein_coding|CODING|ENST00000370549|2|1),INTRON(MODIFIER||||548|HPSE2|protein_coding|CODING|ENST00000370546|2|1),INTRON(MODIFIER||||592|HPSE2|protein_coding|CODING|ENST00000370552|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:1:0:0:0,0:0,0:36,38:0,0	79:0:0:0:7,7:0,0:72,72:0,0
10	101356991	.	A	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||snoU13|snoRNA|NON_CODING|ENST00000458776||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:1:0:0:37,38:0,0:0,0:0,0	73:2:0:0:64,66:0,0:7,8:0,0
10	102037148	.	C	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||117|BLOC1S2|protein_coding|CODING|ENST00000579542||1),DOWNSTREAM(MODIFIER|||||BLOC1S2|processed_transcript|CODING|ENST00000361832||1),INTRON(MODIFIER||||142|BLOC1S2|protein_coding|CODING|ENST00000370372|4|1),INTRON(MODIFIER||||99|BLOC1S2|protein_coding|CODING|ENST00000441611|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	48:3:0:0:0,0:44,52:0,0:1,1	73:7:0:0:0,0:61,89:0,0:5,6
10	102687826	rs1535348	G	A	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||758|FAM178A|protein_coding|CODING|ENST00000370271||1),INTRON(MODIFIER||||1173|FAM178A|protein_coding|CODING|ENST00000238961|6|1),INTRON(MODIFIER||||1186|FAM178A|protein_coding|CODING|ENST00000370269|6|1);RSPOS=102687826;RV;GMAF=0.2523;dbSNPBuildID=88;SSR=0;SAO=0;VP=050100080001040016000100;GENEINFO=FAM178A:55719;WGT=1;VC=SNV;SLO;INT;VLD;KGPhase1;KGPROD;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	17:0:13:0:0,0:0,0:17,17:0,0	32:4:10:0:8,8:0,3:20,21:0,0
10	103107238	.	G	A	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	43:2:0:0:0,0:0,1:41,43:0,0	63:2:0:0:4,4:0,0:57,59:0,0
10	104405140	.	T	C	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||550|TRIM8|protein_coding|CODING|ENST00000369896|1|1),INTRON(MODIFIER||||551|TRIM8|protein_coding|CODING|ENST00000302424|1|1),INTRON(MODIFIER|||||TRIM8|processed_transcript|CODING|ENST00000462202|1|1),UPSTREAM(MODIFIER|||||TRIM8|processed_transcript|CODING|ENST00000487927||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:0:0:0:0,0:0,0:0,0:39,39	67:2:0:0:0,0:6,6:0,0:59,62
10	106221339	.	C	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:0:0:0:0,0:30,30:0,0:0,0	63:0:0:0:5,5:58,58:0,0:0,0
10	106456075	rs190708009	T	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1222|SORCS3|protein_coding|CODING|ENST00000369701|1|1);RSPOS=106456075;GMAF=0.0962;dbSNPBuildID=135;SSR=0;SAO=0;VP=050000080005000014000100;GENEINFO=SORCS3:22986;WGT=1;VC=SNV;INT;ASP;KGPhase1;KGPROD	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	13:1:0:0:0,0:0,0:0,0:12,15	54:4:0:0:0,1:11,11:0,0:39,43
10	106851221	rs148179274	C	T	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=CC->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER||||1222|SORCS3|protein_coding|CODING|ENST00000369701|6|1);RSPOS=106851221;GMAF=0.0788;dbSNPBuildID=134;SSR=0;SAO=0;VP=050000080005000014000100;GENEINFO=SORCS3:22986;WGT=1;VC=SNV;INT;ASP;KGPhase1;KGPROD	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	24:5:0:0:0,0:19,32:0,0:0,0	42:10:1:0:0,0:24,47:0,0:8,8
10	106853801	.	G	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1222|SORCS3|protein_coding|CODING|ENST00000369701|6|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:0:0:0:0,0:0,0:30,30:0,0	69:1:0:0:8,8:0,0:60,61:0,0
10	108566062	.	G	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1168|SORCS1|protein_coding|CODING|ENST00000263054|3|1),INTRON(MODIFIER||||1198|SORCS1|protein_coding|CODING|ENST00000344440|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:0:0:0:0,0:0,0:31,32:0,0	67:0:0:0:0,0:5,5:62,65:0,0
10	108576092	.	T	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1168|SORCS1|protein_coding|CODING|ENST00000263054|3|1),INTRON(MODIFIER||||1198|SORCS1|protein_coding|CODING|ENST00000344440|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:1:0:0:0,0:0,0:1,1:29,30	60:0:0:0:4,4:0,0:0,0:56,56
10	110823330	rs7074801	T	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=110823330;dbSNPBuildID=116;SSR=0;SAO=0;VP=050000000005000102000100;WGT=1;VC=SNV;ASP;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:0:0:0:0,0:2,2:0,0:30,30	81:1:0:0:5,5:1,1:1,1:73,74
10	111932631	.	C	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	28:1:0:0:0,1:27,27:0,0:0,0	57:1:0:0:0,0:50,51:0,0:6,6
10	111937047	.	A	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	28:1:0:0:27,29:0,0:0,0:0,0	71:5:0:0:59,63:1,3:6,7:0,0
10	114785740	.	T	C	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||221|TCF7L2|protein_coding|CODING|ENST00000346198|4|1),INTRON(MODIFIER||||288|TCF7L2|protein_coding|CODING|ENST00000349937|4|1),INTRON(MODIFIER||||317|TCF7L2|protein_coding|CODING|ENST00000369395|3|1),INTRON(MODIFIER||||335|TCF7L2|protein_coding|CODING|ENST00000542695|3|1),INTRON(MODIFIER||||459|TCF7L2|protein_coding|CODING|ENST00000352065|3|1),INTRON(MODIFIER||||482|TCF7L2|protein_coding|CODING|ENST00000538897|4|1),INTRON(MODIFIER||||489|TCF7L2|protein_coding|CODING|ENST00000355717|3|1),INTRON(MODIFIER||||494|TCF7L2|protein_coding|CODING|ENST00000534894|4|1),INTRON(MODIFIER||||596|TCF7L2|protein_coding|CODING|ENST00000369397|3|1),INTRON(MODIFIER||||602|TCF7L2|protein_coding|CODING|ENST00000536810|4|1),INTRON(MODIFIER||||602|TCF7L2|protein_coding|CODING|ENST00000543371|4|1),INTRON(MODIFIER||||619|TCF7L2|protein_coding|CODING|ENST00000355995|4|1),INTRON(MODIFIER||||619|TCF7L2|protein_coding|CODING|ENST00000545257|4|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:1:0:0:0,0:0,0:1,1:36,37	71:4:0:0:0,0:7,7:2,4:58,61
10	117178276	.	T	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1379|ATRNL1|protein_coding|CODING|ENST00000355044|20|1),INTRON(MODIFIER||||172|ATRNL1|protein_coding|CODING|ENST00000303745|3|1),INTRON(MODIFIER||||430|ATRNL1|protein_coding|CODING|ENST00000423111|4|1),INTRON(MODIFIER|||||ATRNL1|processed_transcript|CODING|ENST00000534530|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:0:0:0:0,0:0,0:0,0:30,30	77:0:0:0:5,5:0,0:0,0:72,72
10	119503777	.	G	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:0:0:0:0,0:0,0:30,30:0,0	68:2:0:0:6,6:0,0:60,62:0,0
10	121318998	.	A	C	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:0:0:0:39,40:0,0:0,0:0,0	73:4:0:0:61,62:8,11:0,1:0,0
10	121474644	.	C	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-179H18.8|processed_transcript|NON_CODING|ENST00000436838|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:0:0:0:0,0:29,31:0,0:0,0	88:0:0:0:1,1:81,83:6,6:0,0
10	121478764	.	C	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER|||||RP11-179H18.8|processed_transcript|NON_CODING|ENST00000436838|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:1:0:0:0,0:35,36:0,0:0,0	82:5:0:0:0,0:71,77:1,1:5,5
10	121516126	.	C	T	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1132|INPP5F|protein_coding|CODING|ENST00000361976|2|1),INTRON(MODIFIER||||375|INPP5F|protein_coding|CODING|ENST00000369083|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:0:0:0:0,0:36,38:0,0:0,0	87:0:0:0:1,1:80,81:0,0:6,6
10	122634377	.	A	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1224|WDR11|protein_coding|CODING|ENST00000263461|11|1),INTRON(MODIFIER|||||WDR11|processed_transcript|CODING|ENST00000497136|8|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:1:0:0:31,32:0,0:0,0:0,0	64:1:0:0:57,58:0,0:0,0:6,6
10	124447291	.	G	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:1:0:0:0,0:0,0:32,34:0,0	78:1:0:0:0,0:0,0:73,75:4,4
10	125014505	.	C	T	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	42:4:0:0:0,0:38,87:0,0:0,1	89:8:2:0:0,0:73,154:0,0:8,12
10	126562231	.	G	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:0:0:0:0,0:0,0:30,30:0,0	71:1:0:0:0,0:0,0:66,67:4,4
10	126562236	rs184328240	C	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=126562236;GMAF=0.0005;dbSNPBuildID=135;SSR=0;SAO=0;VP=050000000005000014000100;WGT=1;VC=SNV;ASP;KGPhase1;KGPROD	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:0:0:0:0,0:31,31:0,0:0,0	70:1:0:0:0,0:64,64:0,0:5,6
10	127099857	.	C	G	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:1:0:0:0,0:35,36:0,0:0,0	81:0:0:0:0,0:74,74:7,7:0,0
10	127577919	rs4995389	C	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||U2|snRNA|NON_CODING|ENST00000410697||1),INTRON(MODIFIER||||111|DHX32|protein_coding|CODING|ENST00000415732|1|1);RSPOS=127577919;dbSNPBuildID=113;SSR=0;SAO=0;VP=050000000005040103000100;WGT=1;VC=SNV;ASP;VLD;GNO;OTHERKG;PH3	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:0:0:0:0,0:35,35:0,0:0,1	85:4:0:0:1,1:75,78:0,0:5,18
10	127578078	rs1828976	C	T	.	PASS	NT=ref;QSS=24;QSS_NT=24;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||U2|snRNA|NON_CODING|ENST00000410697||1),INTRON(MODIFIER||||111|DHX32|protein_coding|CODING|ENST00000415732|1|1);RSPOS=127578078;RV;dbSNPBuildID=92;SSR=0;SAO=0;VP=050100000001000002000100;WGT=1;VC=SNV;SLO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	56:0:0:0:0,0:56,59:0,0:0,0	138:0:0:0:0,0:129,143:1,1:8,9
10	127588685	.	C	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||146|FANK1|protein_coding|CODING|ENST00000449042|1|1),INTRON(MODIFIER||||339|FANK1|protein_coding|CODING|ENST00000368695|1|1),INTRON(MODIFIER||||345|FANK1|protein_coding|CODING|ENST00000368693|1|1),UPSTREAM(MODIFIER||||111|DHX32|protein_coding|CODING|ENST00000415732||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	63:0:0:0:0,0:62,69:0,0:1,1	134:1:0:0:0,0:124,140:0,0:9,14
10	127591668	.	C	A	.	PASS	NT=ref;QSS=26;QSS_NT=26;SGT=CC->AC;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER||||146|FANK1|protein_coding|CODING|ENST00000449042|1|1),INTRON(MODIFIER||||339|FANK1|protein_coding|CODING|ENST00000368695|1|1),INTRON(MODIFIER||||345|FANK1|protein_coding|CODING|ENST00000368693|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	93:3:0:0:0,3:90,102:0,0:0,0	196:0:0:0:14,15:182,215:0,0:0,0
10	128367456	.	C	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:0:0:0:1,1:31,43:0,0:0,0	85:1:0:0:0,0:78,108:0,0:6,9
10	129753409	.	C	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||139|PTPRE|protein_coding|CODING|ENST00000442830|1|1),INTRON(MODIFIER||||700|PTPRE|protein_coding|CODING|ENST00000254667|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	28:1:0:0:0,0:27,28:0,0:0,0	61:0:0:0:0,0:55,55:6,6:0,0
10	130058973	.	A	G	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=AA->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	23:0:0:0:23,23:0,0:0,0:0,0	72:1:0:0:57,58:0,0:14,14:0,0
10	132099392	rs147639615	G	C	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=132099392;GMAF=0.179;dbSNPBuildID=134;SSR=0;SAO=0;VP=050000000005000014000100;WGT=1;VC=SNV;ASP;KGPhase1;KGPROD	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:1:0:0:0,0:0,1:38,39:0,0	90:6:0:0:0,0:12,18:72,75:0,0
10	132258035	rs113774130	A	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER|||||RP11-540N6.1|lincRNA|NON_CODING|ENST00000439421|1|1);RSPOS=132258035;dbSNPBuildID=132;SSR=0;SAO=0;VP=050000000001040102000100;WGT=1;VC=SNV;VLD;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	27:1:0:0:23,23:1,1:1,2:1,1	58:3:0:0:39,51:0,0:16,19:0,0
10	132498379	.	A	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	27:0:0:0:27,27:0,0:0,0:0,0	70:5:0:0:60,61:0,0:5,9:0,0
10	132498391	.	A	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	28:0:0:0:28,28:0,0:0,0:0,0	70:5:0:0:60,61:0,0:5,10:0,0
10	132591144	.	C	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:0:0:0:0,0:33,33:0,0:0,0	64:0:0:0:0,0:59,59:0,0:5,5
10	132716960	.	A	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:1:0:0:30,30:1,2:0,0:0,0	78:0:0:0:72,72:0,0:6,6:0,0
10	132873709	.	G	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:1:0:0:0,0:0,0:31,31:0,0	87:5:0:0:6,6:0,0:76,82:0,0
10	133284940	rs62636208	T	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=133284940;dbSNPBuildID=129;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:1:0:0:0,0:0,0:0,0:38,41	89:7:0:0:0,0:5,7:0,0:77,92
10	133733898	.	G	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:0:0:0:0,0:0,0:31,32:0,0	81:4:0:0:4,6:1,1:71,73:1,1
10	133810653	.	G	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:1:0:0:0,0:0,0:29,30:0,0	83:1:0:0:7,7:0,0:75,76:0,0
10	134209721	.	G	A	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=GG->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER||||499|PWWP2B|protein_coding|CODING|ENST00000368609||1),UPSTREAM(MODIFIER||||590|PWWP2B|protein_coding|CODING|ENST00000305233||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:0:0:0:0,0:0,0:40,40:0,0	67:2:0:0:9,9:0,0:56,58:0,0
10	134254240	rs141603353	G	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER|||||RP11-432J24.3|antisense|NON_CODING|ENST00000450206|1|1),UPSTREAM(MODIFIER||||145|C10orf91|protein_coding|CODING|ENST00000321248||1),UPSTREAM(MODIFIER||||145|C10orf91|protein_coding|CODING|ENST00000392630||1),UPSTREAM(MODIFIER|||||C10orf91|processed_transcript|CODING|ENST00000490765||1);RSPOS=134254240;GMAF=0.0444;dbSNPBuildID=134;SSR=0;SAO=0;VP=050000000005000014000100;WGT=1;VC=SNV;ASP;KGPhase1;KGPROD	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	41:4:0:0:0,3:0,0:37,66:0,0	94:14:0:0:6,10:0,2:74,136:0,0
10	134368554	.	A	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||137|INPP5A|protein_coding|CODING|ENST00000423490|1|1),INTRON(MODIFIER||||181|INPP5A|protein_coding|CODING|ENST00000451873|1|1),INTRON(MODIFIER||||387|INPP5A|protein_coding|CODING|ENST00000368593|1|1),INTRON(MODIFIER||||412|INPP5A|protein_coding|CODING|ENST00000368594|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:2:0:0:27,29:0,0:0,1:0,0	87:5:0:0:70,71:0,0:12,16:0,0
10	134534485	.	G	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||387|INPP5A|protein_coding|CODING|ENST00000368593|8|1),INTRON(MODIFIER||||412|INPP5A|protein_coding|CODING|ENST00000368594|8|1),INTRON(MODIFIER|||||INPP5A|processed_transcript|CODING|ENST00000487614|4|1),INTRON(MODIFIER|||||INPP5A|processed_transcript|CODING|ENST00000498337|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:3:0:0:0,0:0,0:34,40:1,2	64:5:0:0:5,6:0,0:53,64:1,1
10	134534771	rs59264544	T	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=TT->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER||||387|INPP5A|protein_coding|CODING|ENST00000368593|8|1),INTRON(MODIFIER||||412|INPP5A|protein_coding|CODING|ENST00000368594|8|1),INTRON(MODIFIER|||||INPP5A|processed_transcript|CODING|ENST00000487614|4|1),INTRON(MODIFIER|||||INPP5A|processed_transcript|CODING|ENST00000498337|1|1);RSPOS=134534771;dbSNPBuildID=129;SSR=0;SAO=0;VP=050000080001000002000100;GENEINFO=INPP5A:3632;WGT=1;VC=SNV;INT;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:2:0:0:0,0:0,1:1,1:30,31	54:5:0:0:0,1:7,10:1,1:41,47
10	134586379	.	G	A	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||104|INPP5A|protein_coding|CODING|ENST00000445580|1|1),INTRON(MODIFIER||||387|INPP5A|protein_coding|CODING|ENST00000368593|12|1),INTRON(MODIFIER||||412|INPP5A|protein_coding|CODING|ENST00000368594|12|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:0:0:0:0,0:0,0:31,35:0,0	46:2:0:0:7,8:0,0:37,40:0,0
10	134613087	.	G	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:0:0:0:0,0:0,0:29,30:0,0	74:2:0:0:5,5:0,0:67,72:0,0
10	134744984	.	C	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1530|TTC40|protein_coding|CODING|ENST00000368582|8|1),INTRON(MODIFIER||||2715|TTC40|protein_coding|CODING|ENST00000368586|8|1),INTRON(MODIFIER||||405|TTC40|protein_coding|CODING|ENST00000368585|8|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:1:0:0:0,0:30,32:0,0:0,0	65:3:0:0:0,0:58,63:0,0:4,4
10	134802685	.	T	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:2:0:0:0,0:0,1:1,1:30,31	86:4:0:0:10,10:0,0:1,2:71,78
10	134937734	.	A	G	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||464|GPR123|protein_coding|CODING|ENST00000392606|2|1),INTRON(MODIFIER||||560|GPR123|protein_coding|CODING|ENST00000392607|5|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:1:0:0:33,34:2,2:0,0:0,0	79:6:0:0:60,63:8,11:5,5:0,0
10	135035335	rs113851948	A	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1749|KNDC1|protein_coding|CODING|ENST00000304613|29|1),INTRON(MODIFIER||||1751|KNDC1|protein_coding|CODING|ENST00000368572|29|1),INTRON(MODIFIER|||||KNDC1|processed_transcript|CODING|ENST00000532588|3|1);RSPOS=135035335;dbSNPBuildID=132;SSR=0;SAO=0;VP=050000080001040102000100;GENEINFO=KNDC1:85442;WGT=1;VC=SNV;INT;VLD;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:1:0:0:36,39:0,0:1,1:0,0	64:1:0:0:53,60:0,0:10,12:0,1
10	135154597	.	T	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||BANF1P2|processed_pseudogene|NON_CODING|ENST00000430526||1),DOWNSTREAM(MODIFIER|||||RP11-122K13.7|antisense|NON_CODING|ENST00000452591||1),INTRON(MODIFIER||||310|ZNF511|protein_coding|CODING|ENST00000368554|4|1),UPSTREAM(MODIFIER||||124|CALY|protein_coding|CODING|ENST00000368556||1),UPSTREAM(MODIFIER||||124|CALY|protein_coding|CODING|ENST00000368558||1),UPSTREAM(MODIFIER||||158|CALY|protein_coding|CODING|ENST00000368555||1),UPSTREAM(MODIFIER||||217|CALY|protein_coding|CODING|ENST00000252939||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:1:0:0:0,0:0,0:0,0:29,30	92:1:0:0:5,5:0,0:0,0:86,91
10	135202242	.	G	T	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||325|PAOX|protein_coding|CODING|ENST00000480071|3|1),INTRON(MODIFIER||||486|PAOX|protein_coding|CODING|ENST00000357296|4|1),INTRON(MODIFIER||||511|PAOX|protein_coding|CODING|ENST00000278060|4|1),INTRON(MODIFIER||||69|PAOX|protein_coding|CODING|ENST00000368539|3|1),INTRON(MODIFIER|||||PAOX|nonsense_mediated_decay|CODING|ENST00000356306|3|1),INTRON(MODIFIER|||||PAOX|nonsense_mediated_decay|CODING|ENST00000476834|4|1),INTRON(MODIFIER|||||PAOX|nonsense_mediated_decay|CODING|ENST00000483211|2|1),INTRON(MODIFIER|||||PAOX|nonsense_mediated_decay|CODING|ENST00000529585|2|1),INTRON(MODIFIER|||||PAOX|processed_transcript|CODING|ENST00000368535|4|1),UPSTREAM(MODIFIER||||339|MTG1|protein_coding|CODING|ENST00000468317||1),UPSTREAM(MODIFIER|||||PAOX|processed_transcript|CODING|ENST00000530555||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	45:1:0:0:0,0:0,0:44,45:0,0	63:0:0:0:0,0:0,0:59,59:4,4
10	135290510	.	G	C	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||151|SPRN|protein_coding|CODING|ENST00000541506|1|1),INTRON(MODIFIER||||693|RP11-108K14.4|protein_coding|CODING|ENST00000356567|13|1),INTRON(MODIFIER|||||RP11-108K14.4|retained_intron|CODING|ENST00000488261|11|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:2:0:0:0,0:0,0:34,38:0,0	75:5:0:0:0,0:10,11:60,66:0,0
10	135467038	.	T	A	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||KIAA0664P5|unprocessed_pseudogene|NON_CODING|ENST00000438421||1),INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||XX-2136C48.2|unprocessed_pseudogene|NON_CODING|ENST00000554262||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:0:0:0:0,1:0,0:0,0:36,41	90:1:0:0:6,10:0,0:0,0:83,90
10	135471383	rs199959299	G	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=DOWNSTREAM(MODIFIER|||||AL845259.1|miRNA|NON_CODING|ENST00000408181||1),DOWNSTREAM(MODIFIER|||||XX-2136C48.2|unprocessed_pseudogene|NON_CODING|ENST00000554262||1),INTRON(MODIFIER|||||KIAA0664P5|unprocessed_pseudogene|NON_CODING|ENST00000438421|6|1);RSPOS=135471383;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	50:5:0:0:0,2:0,0:45,50:0,0	92:5:0:0:9,14:0,0:78,90:0,0
11	428900	rs111575465	A	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||ANO9|retained_intron|CODING|ENST00000525857||1),INTRON(MODIFIER||||782|ANO9|protein_coding|CODING|ENST00000332826|11|1),INTRON(MODIFIER|||||ANO9|retained_intron|CODING|ENST00000526142|1|1),INTRON(MODIFIER|||||ANO9|retained_intron|CODING|ENST00000528927|10|1),INTRON(MODIFIER|||||ANO9|retained_intron|CODING|ENST00000532094|6|1),INTRON(MODIFIER|||||ANO9|retained_intron|CODING|ENST00000534161|2|1);RSPOS=428900;GMAF=0.0215;dbSNPBuildID=132;SSR=0;SAO=0;VP=050100080001040116000100;GENEINFO=ANO9:338440;WGT=1;VC=SNV;SLO;INT;VLD;GNO;KGPhase1;KGPROD;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:2:0:0:38,41:0,1:0,0:0,0	74:4:0:0:63,69:0,2:7,8:0,0
11	505263	rs191808165	T	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=EXON(MODIFIER|||||RNH1|retained_intron|CODING|ENST00000525522|1|1),INTRON(MODIFIER||||180|RNH1|protein_coding|CODING|ENST00000531149|1|1),INTRON(MODIFIER||||188|RNH1|protein_coding|CODING|ENST00000529306|1|1),INTRON(MODIFIER||||198|RNH1|protein_coding|CODING|ENST00000527485|1|1),INTRON(MODIFIER||||39|RNH1|protein_coding|CODING|ENST00000532055|2|1),INTRON(MODIFIER||||461|RNH1|protein_coding|CODING|ENST00000354420|1|1),INTRON(MODIFIER||||461|RNH1|protein_coding|CODING|ENST00000356187|1|1),INTRON(MODIFIER||||461|RNH1|protein_coding|CODING|ENST00000397604|1|1),INTRON(MODIFIER||||461|RNH1|protein_coding|CODING|ENST00000397614|1|1),INTRON(MODIFIER||||461|RNH1|protein_coding|CODING|ENST00000397615|1|1),INTRON(MODIFIER||||461|RNH1|protein_coding|CODING|ENST00000438658|1|1),INTRON(MODIFIER||||461|RNH1|protein_coding|CODING|ENST00000533410|1|1),INTRON(MODIFIER||||7|RNH1|protein_coding|CODING|ENST00000531540|1|1),INTRON(MODIFIER|||||RNH1|nonsense_mediated_decay|CODING|ENST00000524464|1|1),INTRON(MODIFIER|||||RNH1|nonsense_mediated_decay|CODING|ENST00000525701|1|1),INTRON(MODIFIER|||||RNH1|nonsense_mediated_decay|CODING|ENST00000529115|1|1),INTRON(MODIFIER|||||RNH1|processed_transcript|CODING|ENST00000526013|1|1),INTRON(MODIFIER|||||RNH1|processed_transcript|CODING|ENST00000526295|1|1),INTRON(MODIFIER|||||RNH1|retained_intron|CODING|ENST00000524780|1|1),INTRON(MODIFIER|||||RNH1|retained_intron|CODING|ENST00000528713|1|1),UPSTREAM(MODIFIER||||193|RNH1|protein_coding|CODING|ENST00000529368||1),UPSTREAM(MODIFIER||||461|RNH1|protein_coding|CODING|ENST00000534797||1),UPSTREAM(MODIFIER|||||RNH1|processed_transcript|CODING|ENST00000533592||1),UPSTREAM(MODIFIER|||||RNH1|retained_intron|CODING|ENST00000531223||1);RSPOS=505263;GMAF=0.0009;dbSNPBuildID=135;SSR=0;SAO=0;VP=050000080005000014000100;GENEINFO=RNH1:6050;WGT=1;VC=SNV;INT;ASP;KGPhase1;KGPROD	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	28:0:0:0:0,0:0,0:0,0:28,28	82:0:0:0:10,10:0,0:0,0:72,72
11	589885	.	C	G	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1645|PHRF1|protein_coding|CODING|ENST00000533464|4|1),INTRON(MODIFIER||||1647|PHRF1|protein_coding|CODING|ENST00000413872|4|1),INTRON(MODIFIER||||1648|PHRF1|protein_coding|CODING|ENST00000416188|4|1),INTRON(MODIFIER||||1649|PHRF1|protein_coding|CODING|ENST00000264555|4|1),INTRON(MODIFIER|||||PHRF1|nonsense_mediated_decay|CODING|ENST00000534320|4|1),INTRON(MODIFIER|||||PHRF1|retained_intron|CODING|ENST00000526724|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	42:3:0:0:0,0:39,47:0,0:0,0	103:8:0:0:0,0:88,98:7,7:0,0
11	980034	rs113173114	C	G	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->CG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=DOWNSTREAM(MODIFIER||||183|AP2A2|protein_coding|CODING|ENST00000531548||1),DOWNSTREAM(MODIFIER||||184|AP2A2|protein_coding|CODING|ENST00000534485||1),DOWNSTREAM(MODIFIER||||89|AP2A2|protein_coding|CODING|ENST00000524559||1),DOWNSTREAM(MODIFIER|||||AP2A2|processed_transcript|CODING|ENST00000529818||1),INTRON(MODIFIER||||124|AP2A2|protein_coding|CODING|ENST00000525796|3|1),INTRON(MODIFIER||||378|AP2A2|protein_coding|CODING|ENST00000534328|5|1),INTRON(MODIFIER||||676|AP2A2|protein_coding|CODING|ENST00000529125|4|1),INTRON(MODIFIER||||939|AP2A2|protein_coding|CODING|ENST00000448903|5|1),INTRON(MODIFIER||||940|AP2A2|protein_coding|CODING|ENST00000332231|5|1),INTRON(MODIFIER|||||AP2A2|nonsense_mediated_decay|CODING|ENST00000528815|5|1),INTRON(MODIFIER|||||AP2A2|processed_transcript|CODING|ENST00000528195|2|1),INTRON(MODIFIER|||||AP2A2|retained_intron|CODING|ENST00000527007|2|1);RSPOS=980034;dbSNPBuildID=132;SSR=0;SAO=0;VP=050000080005000102000100;GENEINFO=AP2A2:161;WGT=1;VC=SNV;INT;ASP;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	41:2:0:0:0,0:39,45:0,0:0,0	73:0:0:0:0,0:68,78:5,5:0,0
11	1129943	.	T	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	24:0:0:0:0,0:0,0:0,0:24,32	37:4:0:0:0,0:5,8:0,0:28,57
11	1213070	.	C	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->CG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=EXON(MODIFIER|||||MUC5AC|processed_transcript|CODING|ENST00000358378|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	66:5:0:0:0,0:61,102:0,1:0,0	182:8:0:0:0,0:166,249:8,13:0,0
11	1598220	rs28376454	C	A	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP13-25N22.1|processed_transcript|NON_CODING|ENST00000424148|1|1),INTRON(MODIFIER|||||RP13-25N22.1|processed_transcript|NON_CODING|ENST00000524947|1|1),INTRON(MODIFIER|||||RP13-25N22.1|processed_transcript|NON_CODING|ENST00000532922|1|1),INTRON(MODIFIER|||||RP13-25N22.1|processed_transcript|NON_CODING|ENST00000534077|1|1);RSPOS=1598220;dbSNPBuildID=125;SSR=0;SAO=0;VP=050000080001040102000100;GENEINFO=LOC338651:338651;WGT=1;VC=SNV;INT;VLD;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	49:1:0:0:0,0:48,49:0,0:0,0	64:0:0:0:4,4:60,60:0,0:0,0
11	1892957	.	C	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||121|LSP1|protein_coding|CODING|ENST00000418975|1|1),INTRON(MODIFIER||||125|LSP1|protein_coding|CODING|ENST00000446808|1|1),INTRON(MODIFIER||||174|LSP1|protein_coding|CODING|ENST00000429923|1|1),INTRON(MODIFIER||||221|LSP1|protein_coding|CODING|ENST00000417766|1|1),INTRON(MODIFIER||||274|LSP1|protein_coding|CODING|ENST00000457279|1|1),INTRON(MODIFIER||||277|LSP1|protein_coding|CODING|ENST00000405957|1|1),INTRON(MODIFIER||||277|LSP1|protein_coding|CODING|ENST00000406638|1|1),INTRON(MODIFIER||||339|LSP1|protein_coding|CODING|ENST00000311604|1|1),INTRON(MODIFIER||||467|LSP1|protein_coding|CODING|ENST00000381775|2|1),INTRON(MODIFIER||||59|LSP1|protein_coding|CODING|ENST00000421485|1|1),INTRON(MODIFIER||||63|LSP1|protein_coding|CODING|ENST00000451814|1|1),INTRON(MODIFIER|||||LSP1|processed_transcript|CODING|ENST00000472974|1|1),UPSTREAM(MODIFIER||||221|LSP1|protein_coding|CODING|ENST00000432093||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:2:0:0:0,0:32,34:0,0:0,0	71:9:0:0:0,0:56,63:0,1:6,8
11	2021162	.	T	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||H19|lincRNA|NON_CODING|ENST00000428066|1|1),UPSTREAM(MODIFIER|||||H19|lincRNA|NON_CODING|ENST00000411754||1),UPSTREAM(MODIFIER|||||H19|lincRNA|NON_CODING|ENST00000412788||1),UPSTREAM(MODIFIER|||||H19|lincRNA|NON_CODING|ENST00000414790||1),UPSTREAM(MODIFIER|||||H19|lincRNA|NON_CODING|ENST00000417089||1),UPSTREAM(MODIFIER|||||H19|lincRNA|NON_CODING|ENST00000422826||1),UPSTREAM(MODIFIER|||||H19|lincRNA|NON_CODING|ENST00000431095||1),UPSTREAM(MODIFIER|||||H19|lincRNA|NON_CODING|ENST00000439725||1),UPSTREAM(MODIFIER|||||H19|lincRNA|NON_CODING|ENST00000442037||1),UPSTREAM(MODIFIER|||||H19|lincRNA|NON_CODING|ENST00000446406||1),UPSTREAM(MODIFIER|||||H19|lincRNA|NON_CODING|ENST00000447298||1),UPSTREAM(MODIFIER|||||H19|processed_transcript|NON_CODING|ENST00000535745||1),UPSTREAM(MODIFIER|||||H19|retained_intron|NON_CODING|ENST00000411861||1),UPSTREAM(MODIFIER|||||H19|retained_intron|NON_CODING|ENST00000436715||1),UPSTREAM(MODIFIER|||||MIR675|miRNA|NON_CODING|ENST00000390168||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:1:0:0:0,0:0,0:0,0:33,35	77:3:0:0:0,0:7,8:0,1:67,69
11	2601540	.	G	C	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||549|KCNQ1|protein_coding|CODING|ENST00000335475|6|1),INTRON(MODIFIER||||676|KCNQ1|protein_coding|CODING|ENST00000155840|6|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:0:0:0:0,0:0,0:37,37:0,0	78:0:0:0:0,0:4,4:73,73:1,1
11	3599715	rs199521410	G	A	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP13-726E6.2|processed_transcript|NON_CODING|ENST00000527970|1|1);RSPOS=3599715;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:1:0:0:0,2:0,0:34,37:0,0	68:0:0:0:10,15:0,0:58,60:0,0
11	3790953	.	T	C	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1638|NUP98|protein_coding|CODING|ENST00000359171|7|1),INTRON(MODIFIER||||1726|NUP98|protein_coding|CODING|ENST00000355260|7|1),INTRON(MODIFIER||||1800|NUP98|protein_coding|CODING|ENST00000324932|7|1),INTRON(MODIFIER||||920|NUP98|protein_coding|CODING|ENST00000397004|7|1),INTRON(MODIFIER||||937|NUP98|protein_coding|CODING|ENST00000397007|7|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:0:0:0:0,0:0,0:0,0:39,39	76:1:0:0:0,0:6,6:0,0:69,71
11	4308744	rs201177367	G	A	.	PASS	NT=ref;QSS=27;QSS_NT=27;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=EXON(MODIFIER|||||SSU72P4|processed_pseudogene|NON_CODING|ENST00000530088|1|1);RSPOS=4308744;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000000005070002000100;WGT=1;VC=SNV;ASP;VLD;G5A;G5;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	28:0:0:0:0,0:0,0:28,34:0,0	45:0:0:0:10,13:0,0:35,46:0,0
11	5637099	.	C	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||313|TRIM6|protein_coding|CODING|ENST00000445329||1),DOWNSTREAM(MODIFIER||||313|TRIM6|protein_coding|CODING|ENST00000506134||1),DOWNSTREAM(MODIFIER||||313|TRIM6|protein_coding|CODING|ENST00000507320||1),DOWNSTREAM(MODIFIER||||313|TRIM6|protein_coding|CODING|ENST00000515022||1),DOWNSTREAM(MODIFIER||||462|TRIM6|protein_coding|CODING|ENST00000380107||1),DOWNSTREAM(MODIFIER||||488|TRIM6|protein_coding|CODING|ENST00000278302||1),DOWNSTREAM(MODIFIER||||516|TRIM6|protein_coding|CODING|ENST00000380097||1),DOWNSTREAM(MODIFIER|||||TRIM6|processed_transcript|CODING|ENST00000481603||1),DOWNSTREAM(MODIFIER|||||TRIM6|processed_transcript|CODING|ENST00000511284||1),DOWNSTREAM(MODIFIER|||||TRIM6|processed_transcript|CODING|ENST00000515469||1),DOWNSTREAM(MODIFIER|||||TRIM6|retained_intron|CODING|ENST00000469187||1),INTRON(MODIFIER||||147|HBG2|protein_coding|CODING|ENST00000380259|2|1),INTRON(MODIFIER||||842|TRIM34|protein_coding|CODING|ENST00000337072|7|1),INTRON(MODIFIER||||842|TRIM6-TRIM34|protein_coding|CODING|ENST00000354852|7|1),INTRON(MODIFIER|||||AC015691.13|processed_transcript|NON_CODING|ENST00000394793|1|1),UPSTREAM(MODIFIER||||488|TRIM34|protein_coding|CODING|ENST00000514226||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	27:0:0:0:0,0:27,27:0,0:0,0	69:1:0:0:6,6:61,64:1,1:0,0
11	6356049	.	C	T	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:2:0:0:0,0:37,39:0,0:0,0	60:0:0:0:0,0:53,53:0,0:7,7
11	7751298	.	G	T	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||339|OR10AB1P|protein_coding|CODING|ENST00000317359||1),INTRON(MODIFIER|||||RP11-494M8.4|processed_transcript|NON_CODING|ENST00000527565|5|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:0:0:0:0,0:0,0:37,37:0,0	68:2:0:0:1,2:0,0:60,61:5,5
11	7968688	.	T	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:0:0:0:0,0:0,0:0,0:32,32	65:0:0:0:0,0:6,6:0,0:59,59
11	9526645	.	T	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||607|ZNF143|protein_coding|CODING|ENST00000396597|10|1),INTRON(MODIFIER||||610|ZNF143|protein_coding|CODING|ENST00000299606|10|1),INTRON(MODIFIER||||637|ZNF143|protein_coding|CODING|ENST00000396604|11|1),INTRON(MODIFIER||||637|ZNF143|protein_coding|CODING|ENST00000530463|11|1),INTRON(MODIFIER||||638|ZNF143|protein_coding|CODING|ENST00000396602|11|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	20:0:0:0:0,0:1,1:0,0:19,20	30:1:0:0:0,0:7,7:0,0:22,25
11	10273258	.	A	T	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1849|SBF2|protein_coding|CODING|ENST00000256190|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:1:0:0:38,39:0,0:0,0:0,0	72:2:0:0:65,67:0,0:0,0:5,8
11	10657511	.	C	T	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||597|MRVI1|protein_coding|CODING|ENST00000424001|1|1),INTRON(MODIFIER||||597|MRVI1|protein_coding|CODING|ENST00000545852|1|1),INTRON(MODIFIER||||597|MRVI1|protein_coding|CODING|ENST00000558540|3|1),INTRON(MODIFIER||||68|MRVI1|protein_coding|CODING|ENST00000529547|3|1),INTRON(MODIFIER||||706|MRVI1|protein_coding|CODING|ENST00000541483|2|1),INTRON(MODIFIER||||821|MRVI1|protein_coding|CODING|ENST00000527509|2|1),INTRON(MODIFIER||||821|MRVI1|protein_coding|CODING|ENST00000547195|1|1),INTRON(MODIFIER||||821|MRVI1|protein_coding|CODING|ENST00000552103|1|1),INTRON(MODIFIER||||885|MRVI1|protein_coding|CODING|ENST00000436272|1|1),INTRON(MODIFIER||||903|MRVI1|protein_coding|CODING|ENST00000421747|1|1),INTRON(MODIFIER||||904|MRVI1|protein_coding|CODING|ENST00000531107|1|1),INTRON(MODIFIER||||912|MRVI1|protein_coding|CODING|ENST00000423302|2|1),INTRON(MODIFIER|||||MRVI1|nonsense_mediated_decay|CODING|ENST00000526414|2|1),INTRON(MODIFIER|||||MRVI1|nonsense_mediated_decay|CODING|ENST00000529448|1|1),INTRON(MODIFIER|||||MRVI1|nonsense_mediated_decay|CODING|ENST00000534266|1|1),INTRON(MODIFIER|||||MRVI1|processed_transcript|CODING|ENST00000531786|2|1),INTRON(MODIFIER|||||MRVI1|processed_transcript|CODING|ENST00000532037|2|1),UPSTREAM(MODIFIER|||||MRVI1|nonsense_mediated_decay|CODING|ENST00000533631||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:1:0:0:0,0:38,39:0,0:0,0	76:2:0:0:0,0:68,71:0,1:6,7
11	10968636	.	T	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:0:0:0:0,0:0,0:0,0:29,30	70:0:0:0:0,0:0,0:7,7:63,63
11	11258315	.	A	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||MTND5P21|processed_pseudogene|NON_CODING|ENST00000531961||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	27:0:0:0:27,27:0,0:0,0:0,0	78:0:0:0:73,75:5,5:0,0:0,0
11	11718142	.	T	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:0:0:0:0,0:0,0:0,0:31,32	72:0:0:0:0,0:5,5:1,1:66,69
11	13648617	.	G	A	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:0:0:0:0,0:0,0:35,35:0,0	78:0:0:0:6,6:0,0:72,72:0,0
11	15582740	.	A	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-531H8.1|lincRNA|NON_CODING|ENST00000527770|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:2:0:0:28,29:0,0:1,2:0,0	68:8:0:0:45,47:13,20:2,2:0,0
11	16266880	.	T	A	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||158|SOX6|protein_coding|CODING|ENST00000533411|3|1),INTRON(MODIFIER||||801|SOX6|protein_coding|CODING|ENST00000528252|3|1),INTRON(MODIFIER||||804|SOX6|protein_coding|CODING|ENST00000527619|3|1),INTRON(MODIFIER||||808|SOX6|protein_coding|CODING|ENST00000316399|2|1),INTRON(MODIFIER||||808|SOX6|protein_coding|CODING|ENST00000396356|3|1),INTRON(MODIFIER||||828|SOX6|protein_coding|CODING|ENST00000352083|3|1),INTRON(MODIFIER||||828|SOX6|protein_coding|CODING|ENST00000528429|3|1),INTRON(MODIFIER|||||SOX6|processed_transcript|CODING|ENST00000531297|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:0:0:0:0,0:0,0:0,0:33,33	93:1:0:0:11,11:0,0:0,0:81,82
11	20340134	.	C	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:1:0:0:0,0:29,30:0,0:0,0	69:1:0:0:0,0:64,66:4,4:0,0
11	20553308	.	G	T	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:2:0:0:0,0:0,0:38,40:0,0	65:0:0:0:0,0:0,0:58,58:7,7
11	21565952	.	G	C	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||753|NELL1|protein_coding|CODING|ENST00000325319|15|1),INTRON(MODIFIER||||763|NELL1|protein_coding|CODING|ENST00000532434|15|1),INTRON(MODIFIER||||810|NELL1|protein_coding|CODING|ENST00000357134|16|1),INTRON(MODIFIER||||838|NELL1|protein_coding|CODING|ENST00000298925|17|1),INTRON(MODIFIER|||||NELL1|processed_transcript|CODING|ENST00000529218|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:0:0:0:0,0:0,0:40,40:0,0	65:0:0:0:0,0:5,5:60,60:0,0
11	21828622	.	A	G	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:0:0:0:34,34:0,0:0,0:0,0	70:1:0:0:64,65:0,0:5,5:0,0
11	21884593	.	T	C	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:0:0:0:0,0:0,0:0,0:39,39	78:1:0:0:0,0:5,5:0,0:72,73
11	21956551	.	A	G	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:0:0:0:37,37:0,0:0,0:0,0	61:0:0:0:55,55:1,1:5,5:0,0
11	22972054	rs200555597	T	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=22972054;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000000015000002000100;WGT=1;VC=SNV;OTH;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:2:0:0:0,0:0,0:0,0:28,30	59:1:0:0:0,0:5,5:0,0:53,55
11	23274702	.	G	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:1:0:0:0,0:0,1:31,31:0,0	86:2:0:0:6,6:0,0:78,80:0,0
11	23775068	.	A	T	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-945A11.1|lincRNA|NON_CODING|ENST00000534068|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:1:0:0:36,37:0,0:0,0:0,0	80:0:0:0:72,72:1,1:0,0:7,7
11	24306328	.	G	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:2:0:0:0,0:0,0:28,30:0,0	70:0:0:0:6,6:0,0:64,64:0,0
11	25061181	.	C	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||260|LUZP2|protein_coding|CODING|ENST00000533227|9|1),INTRON(MODIFIER||||346|LUZP2|protein_coding|CODING|ENST00000336930|9|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:0:0:0:0,0:30,31:0,0:0,0	78:0:0:0:0,0:70,70:0,0:8,8
11	26558445	.	C	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||835|ANO3|protein_coding|CODING|ENST00000531568|6|1),INTRON(MODIFIER||||965|ANO3|protein_coding|CODING|ENST00000525139|9|1),INTRON(MODIFIER||||965|ANO3|protein_coding|CODING|ENST00000537978|10|1),INTRON(MODIFIER||||981|ANO3|protein_coding|CODING|ENST00000256737|9|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:0:0:0:0,0:29,29:0,0:0,0	67:1:0:0:0,0:60,61:0,0:6,6
11	26781733	.	A	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:0:0:0:30,30:0,0:0,0:0,0	80:2:0:0:71,72:1,1:0,0:6,7
11	26987341	.	C	T	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	54:1:0:0:0,0:52,53:0,0:1,1	124:2:0:0:0,0:113,117:1,1:8,10
11	27589283	.	A	T	.	PASS	NT=ref;QSS=24;QSS_NT=24;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||BDNF-AS|antisense|NON_CODING|ENST00000499008|2|1),INTRON(MODIFIER|||||BDNF-AS|antisense|NON_CODING|ENST00000499568|2|1),INTRON(MODIFIER|||||BDNF-AS|antisense|NON_CODING|ENST00000500662|2|1),INTRON(MODIFIER|||||BDNF-AS|antisense|NON_CODING|ENST00000501176|2|1),INTRON(MODIFIER|||||BDNF-AS|antisense|NON_CODING|ENST00000502161|2|1),INTRON(MODIFIER|||||BDNF-AS|antisense|NON_CODING|ENST00000530686|1|1),INTRON(MODIFIER|||||BDNF-AS|antisense|NON_CODING|ENST00000532965|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	48:0:0:0:48,61:0,0:0,0:0,0	143:6:1:0:129,181:0,0:0,1:8,11
11	28809567	.	C	A	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-115J23.1|lincRNA|NON_CODING|ENST00000513853|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:1:0:0:0,0:37,38:0,0:0,0	80:0:0:0:6,6:74,74:0,0:0,0
11	28973940	.	G	A	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-115J23.1|lincRNA|NON_CODING|ENST00000511073|1|1),INTRON(MODIFIER|||||RP11-115J23.1|lincRNA|NON_CODING|ENST00000513853|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:0:0:0:0,0:0,0:37,37:0,0	76:0:0:0:5,5:0,0:71,71:0,0
11	29136011	.	T	C	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	41:0:0:0:0,0:0,0:0,0:41,41	79:1:0:0:0,0:6,7:0,0:72,72
11	30105157	.	A	C	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-624D11.2|lincRNA|NON_CODING|ENST00000527819|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	42:2:0:0:40,42:0,0:0,0:0,0	78:2:0:0:70,72:6,6:0,0:0,0
11	35657823	.	C	T	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:1:0:0:0,0:33,34:0,0:0,0	68:5:0:0:0,0:55,59:0,0:8,8
11	36166431	.	C	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||296|LDLRAD3|protein_coding|CODING|ENST00000528989|3|1),INTRON(MODIFIER||||335|LDLRAD3|protein_coding|CODING|ENST00000524419|4|1),INTRON(MODIFIER||||345|LDLRAD3|protein_coding|CODING|ENST00000315571|4|1),INTRON(MODIFIER|||||LDLRAD3|processed_transcript|CODING|ENST00000532490|4|1),INTRON(MODIFIER|||||LDLRAD3|processed_transcript|CODING|ENST00000534091|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	19:2:0:0:0,0:17,23:0,0:0,0	30:5:0:0:0,0:19,34:0,0:6,8
11	38819311	.	C	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:1:0:0:0,0:35,36:0,0:0,0	64:0:0:0:0,0:59,59:0,0:5,5
11	38955483	.	A	C	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:0:0:0:34,36:0,0:0,0:0,0	75:0:0:0:69,69:6,6:0,0:0,0
11	39961405	.	T	G	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:1:0:0:0,0:0,0:0,0:34,35	83:1:0:0:0,0:0,0:4,4:78,79
11	40179047	.	C	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||40|LRRC4C|protein_coding|CODING|ENST00000533474|1|1),INTRON(MODIFIER||||640|LRRC4C|protein_coding|CODING|ENST00000278198|1|1),INTRON(MODIFIER||||640|LRRC4C|protein_coding|CODING|ENST00000527150|1|1),INTRON(MODIFIER||||640|LRRC4C|protein_coding|CODING|ENST00000528697|5|1),INTRON(MODIFIER||||640|LRRC4C|protein_coding|CODING|ENST00000530763|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:0:0:0:0,0:29,29:0,0:0,0	76:1:0:0:0,0:70,71:0,0:5,5
11	41326353	.	A	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER||||640|LRRC4C|protein_coding|CODING|ENST00000528697|1|1),INTRON(MODIFIER||||640|LRRC4C|protein_coding|CODING|ENST00000530763|1|1),INTRON(MODIFIER|||||LRRC4C|processed_transcript|CODING|ENST00000534577|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	26:4:0:0:21,31:1,3:0,2:0,0	39:7:0:0:23,49:2,3:7,14:0,0
11	41760830	.	A	G	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||RP11-375D13.2|processed_transcript|NON_CODING|ENST00000530379||1),INTRON(MODIFIER|||||RP11-375D13.2|processed_transcript|NON_CODING|ENST00000528720|2|1),INTRON(MODIFIER|||||RP11-375D13.2|processed_transcript|NON_CODING|ENST00000529282|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:0:0:0:31,31:0,0:0,0:0,0	82:0:0:0:72,72:0,0:10,10:0,0
11	43037035	.	C	G	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:0:0:0:0,0:35,36:0,0:0,0	86:1:0:0:0,0:80,82:4,4:1,1
11	44685073	rs201629979	T	G	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=44685073;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:1:0:0:0,0:0,0:0,0:33,34	54:2:0:0:0,0:0,0:8,13:44,47
11	45308989	.	G	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER||||426|SYT13|protein_coding|CODING|ENST00000020926||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:1:0:0:0,0:0,0:33,34:0,0	88:0:0:0:4,4:0,0:84,84:0,0
11	45725601	.	G	A	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:0:0:0:0,0:0,0:33,33:0,0	71:0:0:0:6,6:0,0:65,65:0,0
11	46626416	.	A	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||349|HARBI1|protein_coding|CODING|ENST00000326737|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:0:0:0:35,35:0,0:0,0:0,0	77:1:0:0:70,71:0,0:0,0:6,6
11	47251980	.	T	C	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||238|DDB2|protein_coding|CODING|ENST00000378600|3|1),INTRON(MODIFIER||||244|DDB2|protein_coding|CODING|ENST00000378601|3|1),INTRON(MODIFIER||||363|DDB2|protein_coding|CODING|ENST00000378603|2|1),INTRON(MODIFIER||||427|DDB2|protein_coding|CODING|ENST00000256996|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:0:0:0:0,0:0,0:0,0:34,34	89:2:0:0:0,0:7,8:0,0:80,81
11	48451673	.	C	T	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||OR4C10P|unprocessed_pseudogene|NON_CODING|ENST00000434991||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:0:0:0:0,0:40,40:0,0:0,0	74:0:0:0:0,0:65,65:0,0:9,9
11	48773313	.	C	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:0:0:0:0,0:40,48:0,0:0,0	84:2:0:0:0,2:76,92:0,0:6,9
11	48844769	.	A	T	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	46:2:0:0:44,70:0,0:0,0:0,1	99:5:0:0:89,134:0,0:0,0:5,12
11	48878896	.	A	C	.	PASS	NT=ref;QSS=27;QSS_NT=27;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	64:5:0:0:59,99:0,2:0,1:0,0	119:10:0:0:102,197:7,12:0,7:0,5
11	48883239	.	G	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	75:24:0:0:1,2:0,1:50,132:0,0	170:62:0:0:5,11:0,1:103,302:0,5
11	48894511	.	G	C	.	PASS	NT=ref;QSS=26;QSS_NT=26;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	70:18:0:0:0,3:0,2:52,127:0,0	171:47:0:0:0,3:7,15:117,291:0,3
11	48961920	rs181355733	G	T	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=48961920;dbSNPBuildID=135;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	50:8:0:0:1,1:0,0:41,167:0,8	134:11:0:0:0,2:0,0:117,334:6,18
11	50184582	.	A	G	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:1:0:0:36,38:0,0:0,0:0,0	67:0:1:0:60,61:0,0:7,7:0,0
11	50415259	.	C	A	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	42:3:0:0:0,3:39,69:0,1:0,0	103:6:0:0:5,15:92,148:0,0:0,0
11	50720645	rs145061028	G	C	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=50720645;dbSNPBuildID=134;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	45:12:0:0:0,0:0,7:33,140:0,1	160:34:0:0:0,0:16,45:110,325:0,3
11	50771998	.	A	T	.	PASS	NT=ref;QSS=38;QSS_NT=38;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	95:16:0:0:78,207:0,2:1,1:0,5	204:38:0:0:158,483:1,7:0,2:7,25
11	51232803	.	T	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:1:0:0:0,0:0,0:0,0:30,34	79:0:0:0:7,7:0,0:0,0:72,86
11	51576662	.	T	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	47:0:0:0:0,0:1,1:0,0:46,84	131:1:0:0:0,0:6,9:0,0:124,199
11	51576837	.	A	G	.	PASS	NT=ref;QSS=27;QSS_NT=27;SGT=AA->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	82:3:0:0:78,110:0,0:1,4:0,0	148:6:0:0:135,222:1,2:6,8:0,0
11	54938989	rs185979644	C	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=54938989;GMAF=0.0018;dbSNPBuildID=135;SSR=0;SAO=0;VP=050000000005000014000100;WGT=1;VC=SNV;ASP;KGPhase1;KGPROD	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:0:0:0:0,0:33,33:0,0:0,0	73:0:0:0:0,0:65,65:0,0:8,8
11	55014835	.	T	C	.	PASS	NT=ref;QSS=33;QSS_NT=33;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	82:14:0:0:0,0:0,1:0,5:68,141	215:30:0:0:0,0:8,14:0,1:177,364
11	55026500	rs78031588	C	G	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER||||224|TRIM48|protein_coding|CODING|ENST00000417545||1);RSPOS=55026500;dbSNPBuildID=131;SSR=0;SAO=0;VP=050000000005040102000104;WGT=1;VC=SNV;ASP;VLD;GNO;OTHERKG;NOV	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:0:0:0:0,0:38,40:0,0:0,0	63:3:0:0:0,0:54,60:6,10:0,0
11	55132556	.	G	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER||||344|OR4A15|protein_coding|CODING|ENST00000314706||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	26:0:0:0:0,0:0,0:26,26:0,0	77:0:0:0:8,8:0,0:69,69:0,0
11	55825852	.	C	T	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||OR5AQ1P|unprocessed_pseudogene|NON_CODING|ENST00000331596||1),DOWNSTREAM(MODIFIER|||||OR5AQ1P|unprocessed_pseudogene|NON_CODING|ENST00000527596||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	47:5:0:0:0,0:42,57:0,0:0,0	116:2:0:0:0,3:100,121:0,0:14,17
11	56021887	.	C	A	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||340|OR5T3|protein_coding|CODING|ENST00000303059||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:1:0:0:0,0:37,38:0,0:0,0	72:0:0:0:5,5:67,68:0,0:0,0
11	56098247	rs112736821	T	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||FAM8A2P|unprocessed_pseudogene|NON_CODING|ENST00000528813||1),INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||OR8K2P|unprocessed_pseudogene|NON_CODING|ENST00000524645||1);RSPOS=56098247;dbSNPBuildID=132;SSR=0;SAO=0;VP=050000000009000102000100;WGT=1;VC=SNV;CFL;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:0:0:0:0,0:0,0:1,1:30,30	79:2:0:0:0,0:5,5:0,0:72,74
11	57617722	rs200375674	T	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->GT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=57617722;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:0:0:0:0,0:0,0:0,1:34,34	74:1:0:0:0,0:0,0:6,7:67,68
11	57617733	rs149977393	A	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=AA->AT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=57617733;dbSNPBuildID=134;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:0:0:0:34,34:0,0:0,0:0,1	81:1:0:0:74,76:0,0:0,0:6,6
11	60582801	.	G	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-804A23.1|antisense|NON_CODING|ENST00000541495|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:1:0:0:0,0:0,0:31,34:0,0	79:4:0:0:5,6:0,0:70,79:0,0
11	62287645	.	A	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||120|AHNAK|protein_coding|CODING|ENST00000533365|4|1),INTRON(MODIFIER||||131|AHNAK|protein_coding|CODING|ENST00000530124|2|1),INTRON(MODIFIER||||149|AHNAK|protein_coding|CODING|ENST00000257247|4|1),SYNONYMOUS_CODING(LOW|SILENT|ggT/ggC|G4748|5890|AHNAK|protein_coding|CODING|ENST00000378024|5|1),UPSTREAM(MODIFIER|||||AHNAK|processed_transcript|CODING|ENST00000525875||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	27:1:0:0:26,27:0,0:0,0:0,0	72:2:0:0:63,63:0,0:7,8:0,1
11	62290118	rs142578457	C	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||120|AHNAK|protein_coding|CODING|ENST00000533365|4|1),INTRON(MODIFIER||||131|AHNAK|protein_coding|CODING|ENST00000530124|2|1),INTRON(MODIFIER||||149|AHNAK|protein_coding|CODING|ENST00000257247|4|1),NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|cGa/cAa|R3924Q|5890|AHNAK|protein_coding|CODING|ENST00000378024|5|1);RSPOS=62290118;dbSNPBuildID=134;SSR=0;SAO=0;VP=050000080805000002000100;GENEINFO=AHNAK:79026;WGT=1;VC=SNV;NSM;INT;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:1:0:0:0,0:30,32:0,0:0,0	63:0:0:0:0,0:57,58:0,0:6,6
11	62293699	.	A	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||120|AHNAK|protein_coding|CODING|ENST00000533365|4|1),INTRON(MODIFIER||||131|AHNAK|protein_coding|CODING|ENST00000530124|2|1),INTRON(MODIFIER||||149|AHNAK|protein_coding|CODING|ENST00000257247|4|1),SYNONYMOUS_CODING(LOW|SILENT|ccT/ccC|P2730|5890|AHNAK|protein_coding|CODING|ENST00000378024|5|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	27:0:0:0:27,27:0,0:0,0:0,0	72:0:0:0:67,67:0,0:5,5:0,0
11	63680656	rs12292160	A	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||691|MARK2|protein_coding|CODING|ENST00000377810||1),DOWNSTREAM(MODIFIER||||691|MARK2|protein_coding|CODING|ENST00000408948||1),DOWNSTREAM(MODIFIER||||699|MARK2|protein_coding|CODING|ENST00000425897||1),DOWNSTREAM(MODIFIER||||709|MARK2|protein_coding|CODING|ENST00000350490||1),DOWNSTREAM(MODIFIER||||719|MARK2|protein_coding|CODING|ENST00000361128||1),DOWNSTREAM(MODIFIER||||724|MARK2|protein_coding|CODING|ENST00000508192||1),DOWNSTREAM(MODIFIER||||734|MARK2|protein_coding|CODING|ENST00000413835||1),DOWNSTREAM(MODIFIER||||745|MARK2|protein_coding|CODING|ENST00000509502||1),DOWNSTREAM(MODIFIER||||755|MARK2|protein_coding|CODING|ENST00000513765||1),DOWNSTREAM(MODIFIER||||773|MARK2|protein_coding|CODING|ENST00000377809||1),DOWNSTREAM(MODIFIER||||779|MARK2|protein_coding|CODING|ENST00000315032||1),DOWNSTREAM(MODIFIER||||780|MARK2|protein_coding|CODING|ENST00000502399||1),DOWNSTREAM(MODIFIER||||788|MARK2|protein_coding|CODING|ENST00000402010||1),INTRON(MODIFIER||||523|RCOR2|protein_coding|CODING|ENST00000301459|8|1),UPSTREAM(MODIFIER|||||RCOR2|processed_transcript|CODING|ENST00000473926||1),UPSTREAM(MODIFIER|||||RCOR2|retained_intron|CODING|ENST00000489217||1);RSPOS=63680656;GMAF=0.1676;dbSNPBuildID=120;SSR=0;SAO=0;VP=050100080005000116000100;GENEINFO=RCOR2:283248;WGT=1;VC=SNV;SLO;INT;ASP;GNO;KGPhase1;KGPROD;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	15:0:0:0:15,17:0,0:0,0:0,0	56:3:0:0:41,41:0,0:0,0:12,15
11	63938798	.	G	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	21:0:0:0:0,0:0,1:21,28:0,0	46:0:0:0:0,0:7,8:39,46:0,0
11	63938799	.	G	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	21:0:0:0:0,1:0,0:21,28:0,0	46:0:0:0:7,8:0,0:39,46:0,0
11	64941882	.	T	A	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||293|SPDYC|protein_coding|CODING|ENST00000377185||1),DOWNSTREAM(MODIFIER|||||AP003068.18|transcribed_processed_pseudogene|NON_CODING|ENST00000526979||1),DOWNSTREAM(MODIFIER|||||AP003068.23|nonsense_mediated_decay|CODING|ENST00000528551||1),DOWNSTREAM(MODIFIER|||||PGAM1P8|processed_pseudogene|NON_CODING|ENST00000505544||1),EXON(MODIFIER|||||AP003068.18|processed_transcript|NON_CODING|ENST00000534819|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:0:0:0:0,0:0,0:0,0:39,40	79:0:0:0:8,8:0,0:0,0:71,71
11	64962571	rs112554817	G	T	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||714|CAPN1|protein_coding|CODING|ENST00000279247|10|1),INTRON(MODIFIER||||714|CAPN1|protein_coding|CODING|ENST00000524773|10|1),INTRON(MODIFIER||||714|CAPN1|protein_coding|CODING|ENST00000527323|9|1),INTRON(MODIFIER||||714|CAPN1|protein_coding|CODING|ENST00000533129|10|1),INTRON(MODIFIER||||714|CAPN1|protein_coding|CODING|ENST00000533820|10|1),INTRON(MODIFIER|||||CAPN1|retained_intron|CODING|ENST00000533079|3|1);RSPOS=64962571;dbSNPBuildID=132;SSR=0;SAO=0;VP=050000080015000102000100;GENEINFO=CAPN1:823;WGT=1;VC=SNV;INT;OTH;ASP;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:3:0:0:0,0:0,0:34,37:0,0	66:6:0:0:0,0:0,0:53,59:7,7
11	65530231	.	A	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-770G2.2|lincRNA|NON_CODING|ENST00000534505|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:1:0:0:35,36:0,0:0,1:0,0	60:2:0:0:48,50:9,11:1,1:0,0
11	65967233	.	G	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||105|PACS1|protein_coding|CODING|ENST00000533756|3|1),INTRON(MODIFIER||||165|PACS1|protein_coding|CODING|ENST00000527380|2|1),INTRON(MODIFIER||||963|PACS1|protein_coding|CODING|ENST00000320580|2|1),INTRON(MODIFIER|||||PACS1|retained_intron|CODING|ENST00000527224|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:0:0:0:0,0:0,0:29,29:0,0	73:0:0:0:6,6:0,0:67,67:0,0
11	66785418	.	T	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||421|SYT12|protein_coding|CODING|ENST00000393946|3|1),UPSTREAM(MODIFIER||||421|SYT12|protein_coding|CODING|ENST00000525457||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	28:0:0:0:0,0:1,1:0,0:27,27	53:2:0:0:0,1:11,13:0,1:40,42
11	66802929	rs200787701	C	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||SYT12|retained_intron|CODING|ENST00000531392||1),INTRON(MODIFIER||||421|SYT12|protein_coding|CODING|ENST00000393946|6|1),INTRON(MODIFIER||||421|SYT12|protein_coding|CODING|ENST00000525457|3|1),INTRON(MODIFIER||||421|SYT12|protein_coding|CODING|ENST00000527043|3|1),INTRON(MODIFIER||||97|SYT12|protein_coding|CODING|ENST00000533427|3|1),INTRON(MODIFIER|||||SYT12|processed_transcript|CODING|ENST00000525149|3|1),INTRON(MODIFIER|||||SYT12|processed_transcript|CODING|ENST00000526281|2|1);RSPOS=66802929;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000080005000002000100;WGT=1;VC=SNV;INT;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:0:0:0:0,0:31,32:0,1:0,0	72:5:0:0:1,1:57,57:0,0:9,14
11	67128063	.	A	G	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||215|CLCF1|protein_coding|CODING|ENST00000528474||1),DOWNSTREAM(MODIFIER||||215|CLCF1|protein_coding|CODING|ENST00000533438||1),DOWNSTREAM(MODIFIER||||225|CLCF1|protein_coding|CODING|ENST00000312438||1),INTRON(MODIFIER|||||AP003419.11|processed_transcript|NON_CODING|ENST00000543494|1|1),UPSTREAM(MODIFIER|||||7SK|misc_RNA|NON_CODING|ENST00000364814||1),UPSTREAM(MODIFIER|||||POLD4|processed_transcript|CODING|ENST00000532830||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:0:0:0:33,34:0,0:0,0:0,0	66:1:0:0:56,57:0,0:8,8:1,1
11	67639857	.	G	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:1:0:0:0,0:0,0:31,33:0,0	75:2:0:0:0,0:0,0:68,75:5,7
11	68628975	.	A	G	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:1:0:0:33,36:2,3:0,1:0,0	64:7:0:0:50,54:1,5:6,8:0,0
11	68676405	.	T	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||IGHMBP2|nonsense_mediated_decay|CODING|ENST00000545146||1),INTRON(MODIFIER||||192|IGHMBP2|protein_coding|CODING|ENST00000539224|3|1),INTRON(MODIFIER||||993|IGHMBP2|protein_coding|CODING|ENST00000255078|4|1),INTRON(MODIFIER|||||IGHMBP2|nonsense_mediated_decay|CODING|ENST00000544541|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:2:0:0:0,0:0,0:0,0:34,36	64:5:0:0:0,0:5,5:1,5:53,57
11	68844777	.	G	A	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||570|TPCN2|protein_coding|CODING|ENST00000542467|13|1),INTRON(MODIFIER||||752|TPCN2|protein_coding|CODING|ENST00000294309|13|1),INTRON(MODIFIER|||||TPCN2|nonsense_mediated_decay|CODING|ENST00000539166|12|1),INTRON(MODIFIER|||||TPCN2|processed_transcript|CODING|ENST00000442692|8|1),INTRON(MODIFIER|||||TPCN2|retained_intron|CODING|ENST00000535009|11|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:4:0:0:0,0:2,3:29,48:0,0	44:5:0:0:7,16:1,3:30,59:1,1
11	69367408	.	G	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	24:2:0:0:0,0:0,1:22,24:0,0	49:2:0:0:7,9:0,0:40,48:0,0
11	69535650	.	A	G	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:0:0:0:33,33:0,0:0,0:0,0	69:0:1:0:64,69:0,0:5,5:0,0
11	70455825	rs11599938	T	C	.	PASS	NT=ref;QSS=28;QSS_NT=28;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1253|SHANK2|protein_coding|CODING|ENST00000409161|2|1),INTRON(MODIFIER||||1254|SHANK2|protein_coding|CODING|ENST00000449833|2|1),INTRON(MODIFIER||||1470|SHANK2|protein_coding|CODING|ENST00000423696|7|1),INTRON(MODIFIER||||1473|SHANK2|protein_coding|CODING|ENST00000294018|7|1),INTRON(MODIFIER||||1488|SHANK2|protein_coding|CODING|ENST00000433693|7|1),INTRON(MODIFIER||||1850|SHANK2|protein_coding|CODING|ENST00000338508|23|1),INTRON(MODIFIER||||271|SHANK2|protein_coding|CODING|ENST00000449116|2|1),INTRON(MODIFIER||||280|SHANK2|protein_coding|CODING|ENST00000409530|2|1),INTRON(MODIFIER||||281|SHANK2|protein_coding|CODING|ENST00000357171|2|1);RSPOS=70455825;GMAF=0.0087;dbSNPBuildID=120;SSR=0;SAO=0;VP=050000080001040016000100;GENEINFO=SHANK2:22941;WGT=1;VC=SNV;INT;VLD;KGPhase1;KGPROD;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	56:1:0:0:0,0:0,0:0,0:55,56	83:2:0:0:0,1:8,8:0,0:73,74
11	70605004	.	G	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1470|SHANK2|protein_coding|CODING|ENST00000423696|4|1),INTRON(MODIFIER||||1473|SHANK2|protein_coding|CODING|ENST00000294018|4|1),INTRON(MODIFIER||||1488|SHANK2|protein_coding|CODING|ENST00000433693|4|1),INTRON(MODIFIER||||1850|SHANK2|protein_coding|CODING|ENST00000338508|20|1),INTRON(MODIFIER|||||SHANK2|processed_transcript|CODING|ENST00000468619|4|1),INTRON(MODIFIER|||||SHANK2|processed_transcript|CODING|ENST00000470759|2|1),INTRON(MODIFIER|||||SHANK2|processed_transcript|CODING|ENST00000498519|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:0:0:0:0,0:0,0:31,31:0,0	93:2:0:0:7,8:0,0:84,86:0,0
11	70605020	.	C	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1470|SHANK2|protein_coding|CODING|ENST00000423696|4|1),INTRON(MODIFIER||||1473|SHANK2|protein_coding|CODING|ENST00000294018|4|1),INTRON(MODIFIER||||1488|SHANK2|protein_coding|CODING|ENST00000433693|4|1),INTRON(MODIFIER||||1850|SHANK2|protein_coding|CODING|ENST00000338508|20|1),INTRON(MODIFIER|||||SHANK2|processed_transcript|CODING|ENST00000468619|4|1),INTRON(MODIFIER|||||SHANK2|processed_transcript|CODING|ENST00000470759|2|1),INTRON(MODIFIER|||||SHANK2|processed_transcript|CODING|ENST00000498519|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:0:0:0:0,0:30,30:0,0:0,0	92:1:0:0:1,1:83,85:0,0:7,7
11	70668976	rs3017496	G	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1470|SHANK2|protein_coding|CODING|ENST00000423696|1|1),INTRON(MODIFIER||||1473|SHANK2|protein_coding|CODING|ENST00000294018|1|1),INTRON(MODIFIER||||1488|SHANK2|protein_coding|CODING|ENST00000433693|1|1),INTRON(MODIFIER||||1850|SHANK2|protein_coding|CODING|ENST00000338508|17|1),INTRON(MODIFIER|||||SHANK2|processed_transcript|CODING|ENST00000460048|2|1),INTRON(MODIFIER|||||SHANK2|processed_transcript|CODING|ENST00000468619|1|1);RSPOS=70668976;dbSNPBuildID=101;SSR=0;SAO=0;VP=050000080001040002000100;GENEINFO=SHANK2:22941;WGT=1;VC=SNV;INT;VLD;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	19:1:0:0:0,0:0,0:18,21:0,0	21:0:0:0:4,5:1,1:16,22:0,0
11	70865747	.	A	G	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||303|SHANK2|protein_coding|CODING|ENST00000413503|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:1:0:0:31,33:0,0:0,0:0,0	61:3:0:0:50,53:2,3:6,7:0,0
11	71214034	.	C	T	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=CC->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=DOWNSTREAM(MODIFIER||||335|NADSYN1|protein_coding|CODING|ENST00000530055||1),DOWNSTREAM(MODIFIER||||446|NADSYN1|protein_coding|CODING|ENST00000539574||1),DOWNSTREAM(MODIFIER||||706|NADSYN1|protein_coding|CODING|ENST00000319023||1),DOWNSTREAM(MODIFIER|||||NADSYN1|retained_intron|CODING|ENST00000530831||1),DOWNSTREAM(MODIFIER|||||NADSYN1|retained_intron|CODING|ENST00000531236||1),DOWNSTREAM(MODIFIER|||||RP11-684B2.3|processed_pseudogene|NON_CODING|ENST00000532468||1),INTRAGENIC(MODIFIER|||||NADSYN1||CODING|||1),UPSTREAM(MODIFIER|||||NADSYN1|TEC|CODING|ENST00000530530||1),UPSTREAM(MODIFIER|||||NADSYN1|processed_transcript|CODING|ENST00000528211||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	28:0:0:0:0,0:27,29:1,1:0,0	64:3:0:0:0,0:48,54:2,3:11,11
11	71434111	rs200656852	T	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||CTD-2313N18.2|processed_transcript|NON_CODING|ENST00000529093||1),INTRON(MODIFIER|||||CTD-2313N18.2|processed_transcript|NON_CODING|ENST00000524615|1|1),INTRON(MODIFIER|||||CTD-2313N18.2|transcribed_unprocessed_pseudogene|NON_CODING|ENST00000527856|1|1);RSPOS=71434111;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:0:0:0:0,0:0,0:0,3:34,34	73:1:0:0:0,0:0,0:5,20:67,68
11	71630765	.	A	G	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||101|RP11-849H4.2|protein_coding|CODING|ENST00000530333|2|1),INTRON(MODIFIER||||134|RP11-849H4.2|protein_coding|CODING|ENST00000529513|2|1),INTRON(MODIFIER||||142|RP11-849H4.2|protein_coding|CODING|ENST00000529844|2|1),INTRON(MODIFIER||||206|RP11-849H4.2|protein_coding|CODING|ENST00000528511|1|1),INTRON(MODIFIER||||48|RP11-849H4.2|protein_coding|CODING|ENST00000528184|3|1),INTRON(MODIFIER||||81|RP11-849H4.2|protein_coding|CODING|ENST00000534704|3|1),INTRON(MODIFIER||||87|RP11-849H4.2|protein_coding|CODING|ENST00000533047|2|1),UPSTREAM(MODIFIER||||141|RP11-849H4.2|protein_coding|CODING|ENST00000532852||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:3:0:0:30,35:0,1:0,0:0,0	54:4:0:0:44,49:0,1:6,6:0,0
11	72172964	.	C	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	25:0:0:0:0,0:25,26:0,0:0,0	74:1:0:0:0,0:64,65:9,10:0,0
11	72334438	.	C	T	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||U7|snRNA|NON_CODING|ENST00000516110||1),INTRON(MODIFIER||||143|PDE2A|protein_coding|CODING|ENST00000538749|3|1),INTRON(MODIFIER||||685|PDE2A|protein_coding|CODING|ENST00000376450|1|1),INTRON(MODIFIER||||826|PDE2A|protein_coding|CODING|ENST00000418754|2|1),INTRON(MODIFIER||||85|PDE2A|protein_coding|CODING|ENST00000542969|3|1),INTRON(MODIFIER||||932|PDE2A|protein_coding|CODING|ENST00000444035|2|1),INTRON(MODIFIER||||932|PDE2A|protein_coding|CODING|ENST00000540345|3|1),INTRON(MODIFIER||||934|PDE2A|protein_coding|CODING|ENST00000544570|1|1),INTRON(MODIFIER||||941|PDE2A|protein_coding|CODING|ENST00000334456|2|1),INTRON(MODIFIER|||||PDE2A|nonsense_mediated_decay|CODING|ENST00000485058|3|1),INTRON(MODIFIER|||||PDE2A|nonsense_mediated_decay|CODING|ENST00000535701|2|1),INTRON(MODIFIER|||||PDE2A|nonsense_mediated_decay|CODING|ENST00000536308|1|1),INTRON(MODIFIER|||||PDE2A|nonsense_mediated_decay|CODING|ENST00000539367|2|1),INTRON(MODIFIER|||||PDE2A|nonsense_mediated_decay|CODING|ENST00000541998|2|1),INTRON(MODIFIER|||||PDE2A|nonsense_mediated_decay|CODING|ENST00000543575|2|1),INTRON(MODIFIER|||||PDE2A|nonsense_mediated_decay|CODING|ENST00000543750|1|1),INTRON(MODIFIER|||||PDE2A|processed_transcript|CODING|ENST00000540380|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	43:2:0:0:0,0:41,43:0,0:0,0	64:0:0:0:0,0:58,58:0,0:6,6
11	73473109	.	A	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||RP11-707G14.1|antisense|NON_CODING|ENST00000540547||1),INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER||||104|RAB6A|protein_coding|CODING|ENST00000541588||1),UPSTREAM(MODIFIER||||141|RAB6A|protein_coding|CODING|ENST00000539750||1),UPSTREAM(MODIFIER||||175|RAB6A|protein_coding|CODING|ENST00000536566||1),UPSTREAM(MODIFIER||||208|RAB6A|protein_coding|CODING|ENST00000310653||1),UPSTREAM(MODIFIER||||208|RAB6A|protein_coding|CODING|ENST00000336083||1),UPSTREAM(MODIFIER||||208|RAB6A|protein_coding|CODING|ENST00000393571||1),UPSTREAM(MODIFIER||||45|RAB6A|protein_coding|CODING|ENST00000542366||1),UPSTREAM(MODIFIER||||70|RAB6A|protein_coding|CODING|ENST00000540771||1),UPSTREAM(MODIFIER||||73|RAB6A|protein_coding|CODING|ENST00000535748||1),UPSTREAM(MODIFIER|||||RAB6A|nonsense_mediated_decay|CODING|ENST00000537446||1),UPSTREAM(MODIFIER|||||RAB6A|nonsense_mediated_decay|CODING|ENST00000545625||1),UPSTREAM(MODIFIER|||||RAB6A|retained_intron|CODING|ENST00000541795||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	23:2:0:0:21,22:0,0:0,0:0,0	49:3:0:0:38,42:0,0:8,9:0,0
11	73488295	.	T	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	27:0:0:0:0,0:0,0:0,0:27,30	50:1:0:0:0,0:7,7:0,0:42,44
11	73994107	.	C	G	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||P4HA3|retained_intron|CODING|ENST00000531716||1),INTRON(MODIFIER||||544|P4HA3|protein_coding|CODING|ENST00000331597|7|1),INTRON(MODIFIER||||604|P4HA3|protein_coding|CODING|ENST00000427714|7|1),INTRON(MODIFIER|||||P4HA3|nonsense_mediated_decay|CODING|ENST00000524388|8|1),INTRON(MODIFIER|||||P4HA3|nonsense_mediated_decay|CODING|ENST00000525968|7|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	42:0:0:0:0,0:42,42:0,0:0,0	59:0:0:0:0,0:55,55:4,4:0,0
11	75229379	.	G	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||486|GDPD5|protein_coding|CODING|ENST00000376282|1|1),INTRON(MODIFIER||||605|GDPD5|protein_coding|CODING|ENST00000336898|1|1),INTRON(MODIFIER||||72|GDPD5|protein_coding|CODING|ENST00000532435|1|1),INTRON(MODIFIER|||||GDPD5|processed_transcript|CODING|ENST00000524785|1|1),INTRON(MODIFIER|||||GDPD5|processed_transcript|CODING|ENST00000529095|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	27:0:0:0:0,0:0,0:27,27:0,0	85:1:0:0:5,5:0,0:78,78:1,1
11	76644890	.	C	T	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||172|ACER3|protein_coding|CODING|ENST00000526597|2|1),INTRON(MODIFIER||||189|ACER3|protein_coding|CODING|ENST00000530243|2|1),INTRON(MODIFIER||||204|ACER3|protein_coding|CODING|ENST00000534206|2|1),INTRON(MODIFIER||||225|ACER3|protein_coding|CODING|ENST00000538157|3|1),INTRON(MODIFIER||||230|ACER3|protein_coding|CODING|ENST00000533873|1|1),INTRON(MODIFIER||||267|ACER3|protein_coding|CODING|ENST00000532485|2|1),INTRON(MODIFIER|||||ACER3|nonsense_mediated_decay|CODING|ENST00000278544|2|1),INTRON(MODIFIER|||||ACER3|nonsense_mediated_decay|CODING|ENST00000525194|3|1),INTRON(MODIFIER|||||ACER3|nonsense_mediated_decay|CODING|ENST00000525861|2|1),INTRON(MODIFIER|||||ACER3|nonsense_mediated_decay|CODING|ENST00000530334|3|1),INTRON(MODIFIER|||||ACER3|nonsense_mediated_decay|CODING|ENST00000531352|3|1),INTRON(MODIFIER|||||ACER3|nonsense_mediated_decay|CODING|ENST00000531461|2|1),INTRON(MODIFIER|||||ACER3|processed_transcript|CODING|ENST00000527508|1|1),INTRON(MODIFIER|||||ACER3|processed_transcript|CODING|ENST00000530182|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	47:1:0:0:0,0:45,51:0,0:1,1	107:6:0:0:1,1:83,104:1,2:16,21
11	78909752	.	G	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||0|ODZ4|protein_coding|CODING|ENST00000527736|1|1),INTRON(MODIFIER||||2769|ODZ4|protein_coding|CODING|ENST00000278550|3|1),INTRON(MODIFIER|||||ODZ4|processed_transcript|CODING|ENST00000528688|3|1),INTRON(MODIFIER|||||ODZ4|processed_transcript|CODING|ENST00000531583|4|1),INTRON(MODIFIER|||||ODZ4|retained_intron|CODING|ENST00000532654|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:1:0:0:0,0:0,0:34,35:0,0	79:3:0:0:0,0:0,0:71,73:5,6
11	78997725	.	T	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||2769|ODZ4|protein_coding|CODING|ENST00000278550|2|1),INTRON(MODIFIER|||||ODZ4|processed_transcript|CODING|ENST00000528688|2|1),INTRON(MODIFIER|||||ODZ4|processed_transcript|CODING|ENST00000531583|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:0:0:0:0,0:1,1:0,0:28,28	79:0:0:0:9,9:0,0:0,0:70,70
11	79141094	.	G	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||2769|ODZ4|protein_coding|CODING|ENST00000278550|1|1),INTRON(MODIFIER|||||ODZ4|processed_transcript|CODING|ENST00000528688|1|1),INTRON(MODIFIER|||||ODZ4|processed_transcript|CODING|ENST00000531583|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	28:0:0:0:0,0:0,0:28,29:0,0	76:0:0:0:0,0:5,5:71,71:0,0
11	81064155	.	C	T	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:0:0:0:0,0:37,37:0,0:0,0	58:0:0:0:0,0:52,52:0,0:6,6
11	81313085	.	A	G	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:0:0:0:38,38:0,0:0,0:0,0	65:1:0:0:58,59:0,0:6,6:0,0
11	81877240	.	T	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-179A16.1|lincRNA|NON_CODING|ENST00000500502|3|1),INTRON(MODIFIER|||||RP11-179A16.1|lincRNA|NON_CODING|ENST00000532217|4|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:0:0:0:1,1:0,0:0,0:32,32	88:1:0:0:0,0:6,6:0,0:81,82
11	81893214	.	A	G	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-179A16.1|lincRNA|NON_CODING|ENST00000500502|3|1),INTRON(MODIFIER|||||RP11-179A16.1|lincRNA|NON_CODING|ENST00000532217|4|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	43:2:0:0:37,40:4,4:0,1:0,0	64:2:0:0:53,54:2,3:7,11:0,0
11	83552002	.	C	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||334|DLG2|protein_coding|CODING|ENST00000376106|10|1),INTRON(MODIFIER||||552|DLG2|protein_coding|CODING|ENST00000398301|10|1),INTRON(MODIFIER||||620|DLG2|protein_coding|CODING|ENST00000537455|10|1),INTRON(MODIFIER||||749|DLG2|protein_coding|CODING|ENST00000418306|8|1),INTRON(MODIFIER||||791|DLG2|protein_coding|CODING|ENST00000330014|10|1),INTRON(MODIFIER||||811|DLG2|protein_coding|CODING|ENST00000531015|10|1),INTRON(MODIFIER||||852|DLG2|protein_coding|CODING|ENST00000532653|11|1),INTRON(MODIFIER||||866|DLG2|protein_coding|CODING|ENST00000524982|11|1),INTRON(MODIFIER||||870|DLG2|protein_coding|CODING|ENST00000398309|11|1),INTRON(MODIFIER||||909|DLG2|protein_coding|CODING|ENST00000280241|10|1),INTRON(MODIFIER||||975|DLG2|protein_coding|CODING|ENST00000376104|16|1),INTRON(MODIFIER||||975|DLG2|protein_coding|CODING|ENST00000543673|14|1),INTRON(MODIFIER|||||DLG2|retained_intron|CODING|ENST00000529111|11|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	27:0:0:0:0,0:27,27:0,0:0,0	85:0:0:0:0,0:80,80:5,5:0,0
11	83552113	.	C	G	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||334|DLG2|protein_coding|CODING|ENST00000376106|10|1),INTRON(MODIFIER||||552|DLG2|protein_coding|CODING|ENST00000398301|10|1),INTRON(MODIFIER||||620|DLG2|protein_coding|CODING|ENST00000537455|10|1),INTRON(MODIFIER||||749|DLG2|protein_coding|CODING|ENST00000418306|8|1),INTRON(MODIFIER||||791|DLG2|protein_coding|CODING|ENST00000330014|10|1),INTRON(MODIFIER||||811|DLG2|protein_coding|CODING|ENST00000531015|10|1),INTRON(MODIFIER||||852|DLG2|protein_coding|CODING|ENST00000532653|11|1),INTRON(MODIFIER||||866|DLG2|protein_coding|CODING|ENST00000524982|11|1),INTRON(MODIFIER||||870|DLG2|protein_coding|CODING|ENST00000398309|11|1),INTRON(MODIFIER||||909|DLG2|protein_coding|CODING|ENST00000280241|10|1),INTRON(MODIFIER||||975|DLG2|protein_coding|CODING|ENST00000376104|16|1),INTRON(MODIFIER||||975|DLG2|protein_coding|CODING|ENST00000543673|14|1),INTRON(MODIFIER|||||DLG2|retained_intron|CODING|ENST00000529111|11|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:0:0:0:0,0:32,33:0,0:0,0	80:2:0:0:0,0:74,76:4,4:0,0
11	83811224	.	A	G	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=AA->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER||||231|DLG2|protein_coding|CODING|ENST00000398299|2|1),INTRON(MODIFIER||||334|DLG2|protein_coding|CODING|ENST00000376106|3|1),INTRON(MODIFIER||||552|DLG2|protein_coding|CODING|ENST00000398301|3|1),INTRON(MODIFIER||||620|DLG2|protein_coding|CODING|ENST00000537455|3|1),INTRON(MODIFIER||||749|DLG2|protein_coding|CODING|ENST00000418306|2|1),INTRON(MODIFIER||||791|DLG2|protein_coding|CODING|ENST00000330014|3|1),INTRON(MODIFIER||||811|DLG2|protein_coding|CODING|ENST00000531015|3|1),INTRON(MODIFIER||||852|DLG2|protein_coding|CODING|ENST00000532653|4|1),INTRON(MODIFIER||||866|DLG2|protein_coding|CODING|ENST00000524982|4|1),INTRON(MODIFIER||||870|DLG2|protein_coding|CODING|ENST00000398309|4|1),INTRON(MODIFIER||||909|DLG2|protein_coding|CODING|ENST00000280241|3|1),INTRON(MODIFIER||||975|DLG2|protein_coding|CODING|ENST00000376104|9|1),INTRON(MODIFIER||||975|DLG2|protein_coding|CODING|ENST00000543673|7|1),INTRON(MODIFIER|||||DLG2|nonsense_mediated_decay|CODING|ENST00000529401|4|1),INTRON(MODIFIER|||||DLG2|processed_transcript|CODING|ENST00000524941|2|1),INTRON(MODIFIER|||||DLG2|processed_transcript|CODING|ENST00000527466|3|1),INTRON(MODIFIER|||||DLG2|retained_intron|CODING|ENST00000529111|4|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:1:2:0:30,45:0,0:0,1:1,1	73:9:6:0:52,99:1,1:11,17:0,0
11	84518586	.	A	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||73|DLG2|protein_coding|CODING|ENST00000527088|2|1),INTRON(MODIFIER||||852|DLG2|protein_coding|CODING|ENST00000532653|1|1),INTRON(MODIFIER||||866|DLG2|protein_coding|CODING|ENST00000524982|1|1),INTRON(MODIFIER||||870|DLG2|protein_coding|CODING|ENST00000398309|1|1),INTRON(MODIFIER||||975|DLG2|protein_coding|CODING|ENST00000376104|6|1),INTRON(MODIFIER||||975|DLG2|protein_coding|CODING|ENST00000543673|4|1),INTRON(MODIFIER|||||DLG2|processed_transcript|CODING|ENST00000530589|1|1),INTRON(MODIFIER|||||DLG2|retained_intron|CODING|ENST00000529111|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:1:0:0:29,30:0,0:0,0:0,0	72:0:0:0:65,66:0,0:7,7:0,0
11	85254935	.	C	T	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||975|DLG2|protein_coding|CODING|ENST00000376104|3|1),INTRON(MODIFIER||||975|DLG2|protein_coding|CODING|ENST00000543673|1|1),INTRON(MODIFIER|||||DLG2|processed_transcript|CODING|ENST00000472545|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:0:0:0:0,0:37,37:0,0:0,0	67:2:0:0:0,0:56,58:0,0:9,9
11	86122783	.	A	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||CCDC81|retained_intron|CODING|ENST00000529603||1),DOWNSTREAM(MODIFIER|||||CCDC81|retained_intron|CODING|ENST00000532215||1),DOWNSTREAM(MODIFIER|||||CCDC81|retained_intron|CODING|ENST00000532466||1),INTRON(MODIFIER||||387|CCDC81|protein_coding|CODING|ENST00000278487|9|1),INTRON(MODIFIER||||387|CCDC81|protein_coding|CODING|ENST00000528728|5|1),INTRON(MODIFIER||||562|CCDC81|protein_coding|CODING|ENST00000354755|9|1),INTRON(MODIFIER||||652|CCDC81|protein_coding|CODING|ENST00000445632|10|1),INTRON(MODIFIER|||||CCDC81|retained_intron|CODING|ENST00000530845|3|1),UPSTREAM(MODIFIER|||||CCDC81|retained_intron|CODING|ENST00000531587||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:2:0:0:29,31:0,0:0,0:0,0	72:0:0:0:67,67:0,0:5,5:0,0
11	87475479	.	A	G	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:0:0:0:37,37:0,0:0,0:0,0	57:0:0:0:51,51:0,0:6,7:0,0
11	87785864	.	T	C	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-164N3.1|lincRNA|NON_CODING|ENST00000532849|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:0:0:0:0,0:0,0:0,0:39,39	73:1:0:0:0,0:6,6:0,0:66,68
11	90716477	.	C	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:0:0:0:0,0:33,33:0,0:0,0	87:0:0:0:0,0:77,77:0,0:10,10
11	91037946	.	G	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:1:0:0:0,0:0,0:31,32:0,0	68:1:0:0:4,4:0,0:63,64:0,0
11	91220478	.	C	G	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:3:0:0:0,0:37,40:0,0:0,0	86:0:0:0:0,0:80,81:6,6:0,0
11	91975538	.	A	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:0:0:0:31,31:0,0:0,0:0,0	73:0:0:0:69,69:0,0:4,4:0,0
11	92099309	.	G	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||PGAM1P9|processed_pseudogene|NON_CODING|ENST00000503887||1),INTRON(MODIFIER||||1254|FAT3|protein_coding|CODING|ENST00000541502|1|1),INTRON(MODIFIER||||4439|FAT3|protein_coding|CODING|ENST00000525166|1|1),INTRON(MODIFIER||||4557|FAT3|protein_coding|CODING|ENST00000409404|1|1),INTRON(MODIFIER||||4589|FAT3|protein_coding|CODING|ENST00000298047|1|1),INTRON(MODIFIER|||||FAT3|processed_transcript|CODING|ENST00000528921|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:1:0:0:0,0:0,0:28,29:0,0	59:1:0:0:4,4:0,0:54,55:0,0
11	92616454	COSM244435	C	T	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|Cgg/Tgg|R4128W|4439|FAT3|protein_coding|CODING|ENST00000525166|23|1),NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|Cgg/Tgg|R4278W|4557|FAT3|protein_coding|CODING|ENST00000409404|23|1),NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|Cgg/Tgg|R4278W|4589|FAT3|protein_coding|CODING|ENST00000298047|23|1),NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|Cgg/Tgg|R613W|892|FAT3|protein_coding|CODING|ENST00000533797|6|1),UPSTREAM(MODIFIER|||||FAT3|processed_transcript|CODING|ENST00000489716||1),UPSTREAM(MODIFIER|||||FAT3|retained_intron|CODING|ENST00000469900||1);GENE=FAT3_ENST00000409404;STRAND=+;CDS=c.12832C>T;AA=p.R4278W;CNT=1	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	43:1:0:0:0,0:42,43:0,0:0,0	91:0:0:0:0,0:81,81:0,0:10,10
11	92956041	.	C	G	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||RP11-573M3.4|processed_pseudogene|NON_CODING|ENST00000531740||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:0:0:0:0,0:36,36:0,0:1,1	74:1:0:0:0,0:69,71:4,4:0,0
11	92956154	.	C	G	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||RP11-573M3.4|processed_pseudogene|NON_CODING|ENST00000531740||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:2:0:0:0,0:33,35:0,0:0,0	70:2:0:0:0,0:62,62:6,8:0,0
11	92956483	.	C	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||RP11-573M3.4|processed_pseudogene|NON_CODING|ENST00000531740||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	28:0:0:0:0,0:28,28:0,0:0,0	69:1:0:0:1,1:62,64:4,4:1,1
11	92956630	.	C	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||RP11-573M3.4|processed_pseudogene|NON_CODING|ENST00000531740||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:0:0:0:0,0:29,29:0,0:0,0	76:1:0:0:0,0:70,72:5,5:0,0
11	93502458	.	G	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||265|C11orf54|protein_coding|CODING|ENST00000528288||1),INTRON(MODIFIER||||7|TAF1D|protein_coding|CODING|ENST00000527690|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:1:0:0:0,0:0,0:31,32:0,0	69:3:0:0:0,0:4,5:62,63:0,1
11	93644704	.	C	A	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:0:0:0:0,0:37,37:0,0:0,0	61:1:0:0:6,7:54,54:0,0:0,0
11	94053210	.	T	C	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:1:0:0:1,1:0,0:1,1:33,34	74:2:0:0:0,0:7,7:0,0:65,67
11	94949274	rs11021080	G	A	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||317|SESN3|protein_coding|CODING|ENST00000393234|1|1),INTRON(MODIFIER||||321|SESN3|protein_coding|CODING|ENST00000416495|1|1),INTRON(MODIFIER||||353|SESN3|protein_coding|CODING|ENST00000278499|1|1),INTRON(MODIFIER||||492|SESN3|protein_coding|CODING|ENST00000536441|1|1),INTRON(MODIFIER||||69|SESN3|protein_coding|CODING|ENST00000542176|2|1),INTRON(MODIFIER|||||RP11-712B9.2|antisense|NON_CODING|ENST00000534891|2|1),INTRON(MODIFIER|||||SESN3|processed_transcript|CODING|ENST00000537480|1|1);RSPOS=94949274;dbSNPBuildID=120;SSR=0;SAO=0;VP=050000080005000002000100;GENEINFO=SESN3:143686;WGT=1;VC=SNV;INT;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:0:0:0:0,0:0,0:31,31:0,0	75:0:0:0:12,12:0,0:63,63:0,0
11	95940074	.	T	C	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1156|MAML2|protein_coding|CODING|ENST00000440572|2|1),INTRON(MODIFIER||||1156|MAML2|protein_coding|CODING|ENST00000524717|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:0:0:0:0,0:0,0:0,0:39,40	69:0:0:0:0,0:5,5:0,0:64,64
11	95993722	.	C	A	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1156|MAML2|protein_coding|CODING|ENST00000440572|2|1),INTRON(MODIFIER||||1156|MAML2|protein_coding|CODING|ENST00000524717|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:0:0:0:0,0:39,39:0,0:0,0	68:2:0:0:8,9:58,60:0,0:0,0
11	97257903	.	G	C	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:0:0:0:0,0:0,0:39,39:0,0	68:0:0:0:0,0:6,6:62,62:0,0
11	97494889	.	T	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	27:0:0:0:0,0:0,0:0,0:27,27	74:1:0:0:4,4:0,0:0,1:69,69
11	97849041	.	C	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:0:0:0:0,0:32,32:0,0:0,0	71:1:0:0:6,6:64,66:0,0:0,0
11	98198286	rs201952991	G	T	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=98198286;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	18:0:0:0:0,0:0,0:18,20:0,0	38:0:0:0:0,0:0,0:30,33:8,9
11	98729804	rs1906206	C	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=98729804;RV;GMAF=0.1401;dbSNPBuildID=92;SSR=0;SAO=0;VP=050100000005000016000100;WGT=1;VC=SNV;SLO;ASP;KGPhase1;KGPROD;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	22:0:0:0:0,0:22,22:0,0:0,0	53:0:1:0:0,0:44,44:0,0:9,10
11	98729807	rs11217235	G	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=98729807;dbSNPBuildID=120;SSR=0;SAO=0;VP=050000000001000002000100;WGT=1;VC=SNV;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	22:0:0:0:0,0:0,0:22,22:0,0	55:0:1:0:10,11:0,0:45,45:0,0
11	101089764	.	G	A	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	44:1:0:0:0,0:0,0:43,45:0,0	71:2:0:0:6,10:0,0:63,65:0,0
11	101089787	.	C	A	.	PASS	NT=ref;QSS=23;QSS_NT=23;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	43:0:0:0:0,0:43,43:0,0:0,0	73:0:0:0:9,13:64,64:0,0:0,0
11	102601805	.	C	G	.	PASS	NT=ref;QSS=23;QSS_NT=23;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||MMP8|nonsense_mediated_decay|CODING|ENST00000528662||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	77:9:0:0:0,0:67,115:1,4:0,0	149:15:0:0:0,0:128,219:6,9:0,0
11	103683471	.	G	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-563P16.1|lincRNA|NON_CODING|ENST00000533459|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	28:1:0:0:0,0:0,0:27,28:0,0	78:0:0:0:10,10:0,0:68,68:0,0
11	104454707	.	G	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-886D15.1|lincRNA|NON_CODING|ENST00000536529|1|1),INTRON(MODIFIER|||||RP11-886D15.1|lincRNA|NON_CODING|ENST00000538641|1|1),INTRON(MODIFIER|||||RP11-886D15.1|lincRNA|NON_CODING|ENST00000545630|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:0:0:0:0,0:0,0:29,29:0,0	77:1:0:0:0,0:0,0:70,71:6,6
11	104701881	.	A	G	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=AA->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:0:0:0:36,36:0,0:0,0:0,0	71:2:0:0:61,63:0,0:8,8:0,0
11	105675360	.	G	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||433|GRIA4|protein_coding|CODING|ENST00000393125|4|1),INTRON(MODIFIER||||433|GRIA4|protein_coding|CODING|ENST00000428631|3|1),INTRON(MODIFIER||||884|GRIA4|protein_coding|CODING|ENST00000393127|4|1),INTRON(MODIFIER||||884|GRIA4|protein_coding|CODING|ENST00000525187|3|1),INTRON(MODIFIER||||902|GRIA4|protein_coding|CODING|ENST00000282499|4|1),INTRON(MODIFIER||||902|GRIA4|protein_coding|CODING|ENST00000530497|3|1),INTRON(MODIFIER|||||GRIA4|retained_intron|CODING|ENST00000525032|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:1:0:0:0,0:0,0:31,32:0,0	83:1:0:0:10,10:0,0:72,73:0,0
11	107860163	.	C	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:0:0:0:0,0:33,33:0,0:0,0	80:2:0:0:0,1:70,71:0,0:8,8
11	108133277	.	T	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1368|ATM|protein_coding|CODING|ENST00000527805|16|1),INTRON(MODIFIER||||3056|ATM|protein_coding|CODING|ENST00000278616|16|1),INTRON(MODIFIER||||3056|ATM|protein_coding|CODING|ENST00000452508|17|1),UPSTREAM(MODIFIER|||||ATM|processed_transcript|CODING|ENST00000419286||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:0:0:0:0,0:0,0:0,0:36,38	75:0:0:0:0,0:5,5:0,0:70,73
11	108143620	.	G	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||ATM|processed_transcript|CODING|ENST00000419286||1),INTRON(MODIFIER||||1368|ATM|protein_coding|CODING|ENST00000527805|22|1),INTRON(MODIFIER||||3056|ATM|protein_coding|CODING|ENST00000278616|22|1),INTRON(MODIFIER||||3056|ATM|protein_coding|CODING|ENST00000452508|23|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	27:0:0:0:0,0:0,0:27,27:0,0	78:0:0:0:0,0:7,7:71,71:0,0
11	108762367	.	G	A	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||835|DDX10|protein_coding|CODING|ENST00000526794|16|1),INTRON(MODIFIER||||875|DDX10|protein_coding|CODING|ENST00000322536|16|1),INTRON(MODIFIER|||||DDX10|processed_transcript|CODING|ENST00000524979|1|1),INTRON(MODIFIER|||||DDX10|processed_transcript|CODING|ENST00000530116|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	41:0:0:0:0,0:0,0:41,41:0,0	80:1:0:0:5,5:1,1:73,74:0,0
11	109231663	.	C	T	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-708B6.2|processed_transcript|NON_CODING|ENST00000532992|4|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	41:1:0:0:0,0:40,42:0,0:0,0	69:0:0:0:0,0:65,65:0,0:4,4
11	110340855	.	C	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:1:0:0:0,0:31,32:0,0:0,0	58:2:0:0:0,0:52,54:0,0:4,4
11	112617428	.	A	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:0:0:0:31,34:0,0:0,0:0,0	60:1:0:0:54,58:0,0:0,0:5,6
11	113270025	rs201891002	G	A	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|cGc/cAc|R445H|765|ANKK1|protein_coding|CODING|ENST00000303941|8|1);RSPOS=113270025;GMAF=0.0009;dbSNPBuildID=137;SSR=0;SAO=0;VP=050200000a05000014000100;WGT=1;VC=SNV;S3D;NSM;REF;ASP;KGPhase1;KGPROD	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:0:0:0:0,0:0,0:36,36:0,0	73:1:0:0:4,4:0,0:68,69:0,0
11	114438218	.	T	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||260|NXPE4|protein_coding|CODING|ENST00000424261||1),DOWNSTREAM(MODIFIER||||544|NXPE4|protein_coding|CODING|ENST00000375478||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	27:0:0:0:0,0:0,0:0,0:27,28	71:0:0:0:0,0:8,8:0,0:63,64
11	114474340	.	T	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:2:0:0:0,1:1,1:0,0:34,35	55:0:0:0:0,0:9,11:0,0:46,47
11	114476666	.	T	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:5:0:0:0,0:0,0:0,1:32,37	74:2:0:0:0,0:6,6:0,0:66,68
11	115074419	.	T	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||414|CADM1|protein_coding|CODING|ENST00000542447|7|1),INTRON(MODIFIER||||442|CADM1|protein_coding|CODING|ENST00000452722|8|1),INTRON(MODIFIER||||443|CADM1|protein_coding|CODING|ENST00000536727|7|1),INTRON(MODIFIER||||453|CADM1|protein_coding|CODING|ENST00000537058|8|1),INTRON(MODIFIER||||471|CADM1|protein_coding|CODING|ENST00000331581|8|1),INTRON(MODIFIER|||||CADM1|processed_transcript|CODING|ENST00000441886|3|1),INTRON(MODIFIER|||||CADM1|processed_transcript|CODING|ENST00000537140|7|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:1:0:0:0,0:1,1:0,0:32,33	66:0:0:0:5,5:0,0:0,0:61,61
11	115295130	.	G	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||414|CADM1|protein_coding|CODING|ENST00000542447|1|1),INTRON(MODIFIER||||442|CADM1|protein_coding|CODING|ENST00000452722|1|1),INTRON(MODIFIER||||443|CADM1|protein_coding|CODING|ENST00000536727|1|1),INTRON(MODIFIER||||453|CADM1|protein_coding|CODING|ENST00000537058|1|1),INTRON(MODIFIER||||471|CADM1|protein_coding|CODING|ENST00000331581|1|1),INTRON(MODIFIER|||||CADM1|nonsense_mediated_decay|CODING|ENST00000540951|2|1),INTRON(MODIFIER|||||CADM1|processed_transcript|CODING|ENST00000536781|1|1),INTRON(MODIFIER|||||CADM1|processed_transcript|CODING|ENST00000537140|1|1),INTRON(MODIFIER|||||CADM1|retained_intron|CODING|ENST00000541434|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:0:0:0:0,0:0,0:29,29:0,0	67:1:0:0:0,1:4,4:62,62:0,0
11	115642555	.	G	T	.	PASS	NT=ref;QSS=23;QSS_NT=23;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||AP000797.3|lincRNA|NON_CODING|ENST00000539305|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	47:1:0:0:0,0:0,0:46,47:0,0	69:0:0:0:0,0:0,0:64,64:5,5
11	115983901	.	A	G	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:0:0:0:34,34:0,0:0,0:0,0	85:0:0:0:79,79:0,0:6,6:0,0
11	117140957	rs149303972	C	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||513|RNF214|protein_coding|CODING|ENST00000530849|5|1),INTRON(MODIFIER||||548|RNF214|protein_coding|CODING|ENST00000531287|6|1),INTRON(MODIFIER||||703|RNF214|protein_coding|CODING|ENST00000300650|5|1),INTRON(MODIFIER||||703|RNF214|protein_coding|CODING|ENST00000531452|6|1);RSPOS=117140957;dbSNPBuildID=134;SSR=0;SAO=0;VP=050000080005000002000100;GENEINFO=RNF214:257160;WGT=1;VC=SNV;INT;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:1:1:0:0,0:30,31:0,0:0,0	48:1:0:0:0,0:43,43:0,0:4,5
11	117385774	rs187388018	C	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1843|DSCAML1|protein_coding|CODING|ENST00000527706|6|1),INTRON(MODIFIER||||2113|DSCAML1|protein_coding|CODING|ENST00000321322|8|1);RSPOS=117385774;GMAF=0.0009;dbSNPBuildID=135;SSR=0;SAO=0;VP=050000080005000014000100;GENEINFO=DSCAML1:57453;WGT=1;VC=SNV;INT;ASP;KGPhase1;KGPROD	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:2:0:0:0,1:31,34:0,0:0,0	63:0:0:0:0,0:57,57:0,0:6,6
11	118555770	.	T	G	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||AP002954.6|unprocessed_pseudogene|NON_CODING|ENST00000531328||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:0:0:0:0,0:0,0:0,0:37,37	68:1:0:0:0,0:0,0:5,5:62,63
11	119719466	.	A	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:4:0:0:27,31:1,1:0,0:0,0	46:2:0:0:39,42:0,0:5,5:0,0
11	120563908	.	G	A	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||956|GRIK4|protein_coding|CODING|ENST00000438375|2|1),INTRON(MODIFIER||||956|GRIK4|protein_coding|CODING|ENST00000527524|3|1),INTRON(MODIFIER|||||GRIK4|processed_transcript|CODING|ENST00000526536|2|1),INTRON(MODIFIER|||||GRIK4|processed_transcript|CODING|ENST00000527732|1|1),INTRON(MODIFIER|||||GRIK4|retained_intron|CODING|ENST00000533291|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:1:0:0:0,0:0,0:34,34:0,1	75:1:0:0:5,6:1,1:68,71:0,0
11	120564003	.	A	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||956|GRIK4|protein_coding|CODING|ENST00000438375|2|1),INTRON(MODIFIER||||956|GRIK4|protein_coding|CODING|ENST00000527524|3|1),INTRON(MODIFIER|||||GRIK4|processed_transcript|CODING|ENST00000526536|2|1),INTRON(MODIFIER|||||GRIK4|processed_transcript|CODING|ENST00000527732|1|1),INTRON(MODIFIER|||||GRIK4|retained_intron|CODING|ENST00000533291|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:0:0:0:33,34:0,0:0,0:0,0	76:1:0:0:70,71:1,1:4,5:0,0
11	120564006	.	G	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||956|GRIK4|protein_coding|CODING|ENST00000438375|2|1),INTRON(MODIFIER||||956|GRIK4|protein_coding|CODING|ENST00000527524|3|1),INTRON(MODIFIER|||||GRIK4|processed_transcript|CODING|ENST00000526536|2|1),INTRON(MODIFIER|||||GRIK4|processed_transcript|CODING|ENST00000527732|1|1),INTRON(MODIFIER|||||GRIK4|retained_intron|CODING|ENST00000533291|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:0:0:0:0,0:1,1:33,34:0,0	75:1:0:0:1,1:0,0:69,71:4,4
11	121352003	.	C	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||2214|SORL1|protein_coding|CODING|ENST00000260197|3|1),INTRON(MODIFIER|||||SORL1|processed_transcript|CODING|ENST00000532451|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:1:0:0:0,0:34,48:0,1:0,1	58:2:0:0:0,0:49,69:0,0:7,9
11	121368934	.	G	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||2214|SORL1|protein_coding|CODING|ENST00000260197|6|1),INTRON(MODIFIER|||||SORL1|processed_transcript|CODING|ENST00000532451|6|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:1:0:0:0,0:0,0:33,34:1,1	86:0:0:0:0,0:5,5:81,82:0,0
11	122102775	.	C	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||RP11-820L6.1|processed_transcript|NON_CODING|ENST00000528381||1),INTRON(MODIFIER|||||RP11-820L6.1|processed_transcript|NON_CODING|ENST00000527474|3|1),INTRON(MODIFIER|||||RP11-820L6.1|processed_transcript|NON_CODING|ENST00000529733|2|1),INTRON(MODIFIER|||||RP11-820L6.1|processed_transcript|NON_CODING|ENST00000529804|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:1:0:0:0,0:34,35:0,1:0,0	78:0:0:0:0,0:70,70:0,0:8,8
11	124250410	.	G	A	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||313|OR8B2|protein_coding|CODING|ENST00000375013||1),INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||OR8C1P|unprocessed_pseudogene|NON_CODING|ENST00000427511||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	43:3:0:0:0,0:0,0:40,43:0,0	92:2:0:0:9,10:0,0:81,82:0,0
11	125405460	.	T	G	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:0:0:0:0,0:0,0:0,0:37,37	83:0:0:0:0,0:0,0:7,7:76,76
11	126405878	.	A	T	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||600|KIRREL3|protein_coding|CODING|ENST00000525704|2|1),INTRON(MODIFIER||||766|KIRREL3|protein_coding|CODING|ENST00000529097|2|1),INTRON(MODIFIER||||778|KIRREL3|protein_coding|CODING|ENST00000525144|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:0:0:0:39,39:0,0:0,0:0,0	59:4:0:0:50,54:0,0:0,0:5,5
11	129717870	.	C	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER||||275|TMEM45B|protein_coding|CODING|ENST00000281441|1|1),INTRON(MODIFIER|||||TMEM45B|retained_intron|CODING|ENST00000527754|2|1),INTRON(MODIFIER|||||TMEM45B|retained_intron|CODING|ENST00000529381|1|1),UPSTREAM(MODIFIER||||275|TMEM45B|protein_coding|CODING|ENST00000524567||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	52:2:0:0:0,0:48,71:2,3:0,2	163:4:0:0:2,2:148,196:3,4:6,8
11	129717900	.	C	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||275|TMEM45B|protein_coding|CODING|ENST00000281441|1|1),INTRON(MODIFIER|||||TMEM45B|retained_intron|CODING|ENST00000527754|2|1),INTRON(MODIFIER|||||TMEM45B|retained_intron|CODING|ENST00000529381|1|1),UPSTREAM(MODIFIER||||275|TMEM45B|protein_coding|CODING|ENST00000524567||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	41:5:0:0:0,0:36,48:0,1:0,0	108:13:0:0:0,1:88,117:2,6:5,8
11	130725236	.	G	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-890B15.2|lincRNA|NON_CODING|ENST00000533812|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:0:0:0:0,0:0,0:32,32:0,0	79:0:0:0:0,0:4,4:75,76:0,0
11	130900251	.	T	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	27:0:0:0:0,0:0,0:0,0:27,27	74:0:0:0:6,6:0,0:0,0:68,68
11	132145629	.	C	T	.	PASS	NT=ref;QSS=23;QSS_NT=23;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||190|NTM|protein_coding|CODING|ENST00000550167|5|1),INTRON(MODIFIER||||316|NTM|protein_coding|CODING|ENST00000374784|3|1),INTRON(MODIFIER||||344|NTM|protein_coding|CODING|ENST00000374786|3|1),INTRON(MODIFIER||||344|NTM|protein_coding|CODING|ENST00000374791|4|1),INTRON(MODIFIER||||346|NTM|protein_coding|CODING|ENST00000427481|4|1),INTRON(MODIFIER||||355|NTM|protein_coding|CODING|ENST00000425719|3|1),INTRON(MODIFIER||||355|NTM|protein_coding|CODING|ENST00000539799|4|1),INTRON(MODIFIER|||||NTM|processed_transcript|CODING|ENST00000467255|3|1),INTRON(MODIFIER|||||NTM|processed_transcript|CODING|ENST00000474900|2|1),INTRON(MODIFIER|||||NTM|processed_transcript|CODING|ENST00000482316|2|1),INTRON(MODIFIER|||||NTM|processed_transcript|CODING|ENST00000490356|2|1),INTRON(MODIFIER|||||NTM|processed_transcript|CODING|ENST00000496094|2|1),INTRON(MODIFIER|||||NTM|processed_transcript|CODING|ENST00000498764|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	24:0:1:0:0,0:24,24:0,0:0,0	79:6:0:0:0,0:59,59:0,0:14,22
11	134027901	.	T	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||193|NCAPD3|protein_coding|CODING|ENST00000527944||1),DOWNSTREAM(MODIFIER||||263|NCAPD3|protein_coding|CODING|ENST00000530396||1),EXON(MODIFIER|||||NCAPD3|retained_intron|CODING|ENST00000525432|1|1),NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|Agc/Ggc|S1366G|1498|NCAPD3|protein_coding|CODING|ENST00000534548|31|1),UPSTREAM(MODIFIER|||||NCAPD3|processed_transcript|CODING|ENST00000526787||1),UPSTREAM(MODIFIER|||||NCAPD3|processed_transcript|CODING|ENST00000533460||1),UTR_3_PRIME(MODIFIER|||||NCAPD3|nonsense_mediated_decay|CODING|ENST00000525964|32|1),UTR_3_PRIME(MODIFIER|||||NCAPD3|nonsense_mediated_decay|CODING|ENST00000534532|31|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:0:0:0:0,0:0,0:0,0:31,31	71:4:0:0:0,0:8,8:0,1:59,62
11	134156958	.	C	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||313|GLB1L3|protein_coding|CODING|ENST00000389887|6|1),INTRON(MODIFIER||||653|GLB1L3|protein_coding|CODING|ENST00000431683|6|1),UPSTREAM(MODIFIER|||||GLB1L3|retained_intron|CODING|ENST00000486034||1),UPSTREAM(MODIFIER|||||GLB1L3|retained_intron|CODING|ENST00000498012||1),UPSTREAM(MODIFIER|||||GLB1L3|retained_intron|CODING|ENST00000532985||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	26:1:0:0:0,0:25,26:0,0:0,0	61:2:0:0:0,1:52,54:7,7:0,0
11	134393868	rs113344117	G	C	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=134393868;dbSNPBuildID=132;SSR=0;SAO=0;VP=050000000005000102000100;WGT=1;VC=SNV;ASP;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	25:2:0:0:0,0:0,1:23,38:0,0	27:5:0:0:0,0:5,10:16,35:1,1
11	134550829	.	A	T	.	PASS	NT=ref;QSS=25;QSS_NT=25;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	49:0:0:0:49,51:0,0:0,0:0,0	81:0:0:0:72,72:0,0:0,0:9,9
11	134629660	.	T	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-469N6.1|lincRNA|NON_CODING|ENST00000513405|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:0:1:0:0,0:0,0:2,2:28,32	74:8:0:0:8,9:2,3:5,11:51,57
11	134722041	rs12798624	C	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=134722041;dbSNPBuildID=121;SSR=0;SAO=0;VP=050000000001000102000100;WGT=1;VC=SNV;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:1:0:0:0,0:34,34:0,1:0,0	76:1:0:0:0,0:68,71:0,0:7,7
12	74871	.	C	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||ABC7-42389800N19.1|unprocessed_pseudogene|NON_CODING|ENST00000400706|1|1),INTRON(MODIFIER|||||ABC7-42389800N19.1|unprocessed_pseudogene|NON_CODING|ENST00000400806|1|1),INTRON(MODIFIER|||||ABC7-42389800N19.1|unprocessed_pseudogene|NON_CODING|ENST00000541420|1|1),INTRON(MODIFIER|||||ABC7-42389800N19.1|unprocessed_pseudogene|NON_CODING|ENST00000543282|1|1),UPSTREAM(MODIFIER|||||AC215219.1|miRNA|NON_CODING|ENST00000458783||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	67:0:0:0:0,0:67,73:0,0:0,0	126:2:0:0:0,1:116,126:0,0:8,8
12	519909	.	A	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||CCDC77|retained_intron|CODING|ENST00000535959||1),INTRON(MODIFIER||||385|CCDC77|protein_coding|CODING|ENST00000543504|2|1),INTRON(MODIFIER||||456|CCDC77|protein_coding|CODING|ENST00000412006|2|1),INTRON(MODIFIER||||456|CCDC77|protein_coding|CODING|ENST00000422000|2|1),INTRON(MODIFIER||||456|CCDC77|protein_coding|CODING|ENST00000540180|1|1),INTRON(MODIFIER||||488|CCDC77|protein_coding|CODING|ENST00000239830|3|1),INTRON(MODIFIER||||91|CCDC77|protein_coding|CODING|ENST00000535052|3|1),INTRON(MODIFIER|||||CCDC77|processed_transcript|CODING|ENST00000540344|1|1),INTRON(MODIFIER|||||CCDC77|retained_intron|CODING|ENST00000538160|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:1:0:0:28,28:1,2:0,0:0,0	66:1:0:0:58,60:0,0:7,7:0,0
12	920297	.	A	G	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||2134|WNK1|protein_coding|CODING|ENST00000535572|1|1),INTRON(MODIFIER||||2382|WNK1|protein_coding|CODING|ENST00000315939|1|1),INTRON(MODIFIER||||2642|WNK1|protein_coding|CODING|ENST00000537687|1|1),INTRON(MODIFIER||||2880|WNK1|protein_coding|CODING|ENST00000530271|1|1),INTRON(MODIFIER||||393|WNK1|protein_coding|CODING|ENST00000447667|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:0:0:0:33,33:0,0:0,0:0,0	66:0:0:0:61,61:0,0:5,5:0,0
12	1308322	rs113211860	T	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1086|ERC1|protein_coding|CODING|ENST00000355446|11|1),INTRON(MODIFIER||||1088|ERC1|protein_coding|CODING|ENST00000543086|11|1),INTRON(MODIFIER||||1116|ERC1|protein_coding|CODING|ENST00000360905|12|1),INTRON(MODIFIER||||1116|ERC1|protein_coding|CODING|ENST00000397203|12|1),INTRON(MODIFIER||||1116|ERC1|protein_coding|CODING|ENST00000589028|11|1),INTRON(MODIFIER||||1120|ERC1|protein_coding|CODING|ENST00000546231|13|1),INTRON(MODIFIER|||||ERC1|nonsense_mediated_decay|CODING|ENST00000347735|11|1),INTRON(MODIFIER|||||ERC1|nonsense_mediated_decay|CODING|ENST00000440394|11|1),INTRON(MODIFIER|||||ERC1|nonsense_mediated_decay|CODING|ENST00000542302|13|1),INTRON(MODIFIER|||||ERC1|nonsense_mediated_decay|CODING|ENST00000545948|7|1),INTRON(MODIFIER|||||ERC1|processed_transcript|CODING|ENST00000536573|10|1),INTRON(MODIFIER|||||ERC1|retained_intron|CODING|ENST00000538971|9|1),UPSTREAM(MODIFIER|||||ERC1|processed_transcript|CODING|ENST00000544277||1);RSPOS=1308322;dbSNPBuildID=132;SSR=0;SAO=0;VP=050000080001000102000100;GENEINFO=ERC1:23085;WGT=1;VC=SNV;INT;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	21:2:0:0:0,1:0,0:0,0:19,22	52:0:0:0:0,0:9,11:2,2:41,41
12	1308346	rs113648450	A	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1086|ERC1|protein_coding|CODING|ENST00000355446|11|1),INTRON(MODIFIER||||1088|ERC1|protein_coding|CODING|ENST00000543086|11|1),INTRON(MODIFIER||||1116|ERC1|protein_coding|CODING|ENST00000360905|12|1),INTRON(MODIFIER||||1116|ERC1|protein_coding|CODING|ENST00000397203|12|1),INTRON(MODIFIER||||1116|ERC1|protein_coding|CODING|ENST00000589028|11|1),INTRON(MODIFIER||||1120|ERC1|protein_coding|CODING|ENST00000546231|13|1),INTRON(MODIFIER|||||ERC1|nonsense_mediated_decay|CODING|ENST00000347735|11|1),INTRON(MODIFIER|||||ERC1|nonsense_mediated_decay|CODING|ENST00000440394|11|1),INTRON(MODIFIER|||||ERC1|nonsense_mediated_decay|CODING|ENST00000542302|13|1),INTRON(MODIFIER|||||ERC1|nonsense_mediated_decay|CODING|ENST00000545948|7|1),INTRON(MODIFIER|||||ERC1|processed_transcript|CODING|ENST00000536573|10|1),INTRON(MODIFIER|||||ERC1|retained_intron|CODING|ENST00000538971|9|1),UPSTREAM(MODIFIER|||||ERC1|processed_transcript|CODING|ENST00000544277||1);RSPOS=1308346;dbSNPBuildID=132;SSR=0;SAO=0;VP=050000080001000102000100;GENEINFO=ERC1:23085;WGT=1;VC=SNV;INT;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	20:1:0:0:19,21:0,1:0,0:0,0	47:3:0:0:36,39:8,11:0,0:0,0
12	1503482	.	T	C	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1086|ERC1|protein_coding|CODING|ENST00000355446|15|1),INTRON(MODIFIER||||1088|ERC1|protein_coding|CODING|ENST00000543086|15|1),INTRON(MODIFIER||||1116|ERC1|protein_coding|CODING|ENST00000360905|16|1),INTRON(MODIFIER||||1116|ERC1|protein_coding|CODING|ENST00000397203|16|1),INTRON(MODIFIER||||1116|ERC1|protein_coding|CODING|ENST00000589028|15|1),INTRON(MODIFIER||||1120|ERC1|protein_coding|CODING|ENST00000546231|18|1),INTRON(MODIFIER|||||ERC1|nonsense_mediated_decay|CODING|ENST00000347735|15|1),INTRON(MODIFIER|||||ERC1|nonsense_mediated_decay|CODING|ENST00000440394|16|1),INTRON(MODIFIER|||||ERC1|nonsense_mediated_decay|CODING|ENST00000542302|17|1),INTRON(MODIFIER|||||ERC1|nonsense_mediated_decay|CODING|ENST00000545948|12|1),INTRON(MODIFIER|||||ERC1|retained_intron|CODING|ENST00000538971|13|1),UPSTREAM(MODIFIER|||||RP5-951N9.1|antisense|NON_CODING|ENST00000513082||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:2:0:0:0,0:0,0:1,1:35,37	69:2:0:0:0,0:5,7:0,0:62,63
12	3378656	rs5018184	C	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||239|TSPAN9|protein_coding|CODING|ENST00000011898|3|1),INTRON(MODIFIER||||239|TSPAN9|protein_coding|CODING|ENST00000537971|2|1),INTRON(MODIFIER||||271|TSPAN9|protein_coding|CODING|ENST00000407263|1|1),INTRON(MODIFIER|||||TSPAN9|nonsense_mediated_decay|CODING|ENST00000444315|4|1),INTRON(MODIFIER|||||TSPAN9|processed_transcript|CODING|ENST00000431374|1|1),UPSTREAM(MODIFIER|||||TSPAN9|processed_transcript|CODING|ENST00000492305||1);RSPOS=3378656;dbSNPBuildID=113;SSR=0;SAO=0;VP=050000080001000002000100;GENEINFO=TSPAN9:10867;WGT=1;VC=SNV;INT;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:5:0:0:0,0:31,38:0,0:1,1	59:5:0:0:0,0:44,53:0,1:10,17
12	3378743	.	T	C	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||239|TSPAN9|protein_coding|CODING|ENST00000011898|3|1),INTRON(MODIFIER||||239|TSPAN9|protein_coding|CODING|ENST00000537971|2|1),INTRON(MODIFIER||||271|TSPAN9|protein_coding|CODING|ENST00000407263|1|1),INTRON(MODIFIER|||||TSPAN9|nonsense_mediated_decay|CODING|ENST00000444315|4|1),INTRON(MODIFIER|||||TSPAN9|processed_transcript|CODING|ENST00000431374|1|1),UPSTREAM(MODIFIER|||||TSPAN9|processed_transcript|CODING|ENST00000492305||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	44:0:0:0:0,0:1,1:0,0:43,46	99:5:0:0:0,0:7,8:0,2:87,98
12	5697366	.	A	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||RP11-592H6.3|processed_pseudogene|NON_CODING|ENST00000545761||1),INTRON(MODIFIER||||998|ANO2|protein_coding|CODING|ENST00000327087|21|1),INTRON(MODIFIER||||999|ANO2|protein_coding|CODING|ENST00000356134|22|1),INTRON(MODIFIER||||999|ANO2|protein_coding|CODING|ENST00000546188|21|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:4:0:0:28,32:0,0:0,0:0,0	73:4:0:0:59,61:0,1:10,12:0,0
12	6088713	.	T	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER||||2813|VWF|protein_coding|CODING|ENST00000261405|42|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	41:2:0:0:0,0:0,1:0,0:39,43	82:3:0:0:0,0:7,9:0,0:72,74
12	6848726	.	A	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:1:0:0:36,38:1,1:0,0:0,0	63:1:0:0:55,56:0,0:7,7:0,0
12	6848728	.	A	G	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:1:0:0:38,40:0,0:0,0:0,0	62:1:0:0:54,54:0,0:7,8:0,0
12	7040924	.	C	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1190|ATN1|protein_coding|CODING|ENST00000356654|1|1),INTRON(MODIFIER||||1190|ATN1|protein_coding|CODING|ENST00000396684|1|1),UPSTREAM(MODIFIER||||1190|ATN1|protein_coding|CODING|ENST00000544325||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:2:0:0:0,1:29,31:0,0:0,0	64:1:0:0:0,0:55,57:0,0:8,8
12	8358566	.	G	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||FAM66C|antisense|NON_CODING|ENST00000456135||1),DOWNSTREAM(MODIFIER|||||FAM66C|antisense|NON_CODING|ENST00000535567||1),DOWNSTREAM(MODIFIER|||||FAM66C|antisense|NON_CODING|ENST00000544214||1),INTRON(MODIFIER|||||FAM66C|antisense|NON_CODING|ENST00000372173|3|1),INTRON(MODIFIER|||||FAM66C|antisense|NON_CODING|ENST00000454799|6|1),INTRON(MODIFIER|||||RP11-266K4.1|processed_transcript|NON_CODING|ENST00000542600|2|1),INTRON(MODIFIER|||||RP11-266K4.1|transcribed_unprocessed_pseudogene|NON_CODING|ENST00000491870|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:0:0:0:0,0:0,0:29,29:0,0	80:1:0:0:0,0:0,0:72,73:7,7
12	8362839	rs201439436	A	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||FAM66C|antisense|NON_CODING|ENST00000372173|3|1),INTRON(MODIFIER|||||FAM66C|antisense|NON_CODING|ENST00000454799|6|1),INTRON(MODIFIER|||||RP11-266K4.1|processed_transcript|NON_CODING|ENST00000542600|1|1),UPSTREAM(MODIFIER|||||RP11-266K4.1|transcribed_unprocessed_pseudogene|NON_CODING|ENST00000491870||1);RSPOS=8362839;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:0:0:0:32,32:0,0:0,0:0,0	67:0:0:0:59,59:0,0:0,0:8,10
12	8369049	.	T	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||464|FAM90A1|protein_coding|CODING|ENST00000307435||1),DOWNSTREAM(MODIFIER||||464|FAM90A1|protein_coding|CODING|ENST00000538603||1),DOWNSTREAM(MODIFIER|||||FAM66C|antisense|NON_CODING|ENST00000372173||1),DOWNSTREAM(MODIFIER|||||FAM66C|antisense|NON_CODING|ENST00000454799||1),INTRON(MODIFIER|||||RP11-266K4.1|processed_transcript|NON_CODING|ENST00000542600|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	27:0:0:0:0,0:0,0:0,0:27,27	89:1:0:0:10,12:0,0:0,0:78,78
12	8369052	rs74600317	G	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||464|FAM90A1|protein_coding|CODING|ENST00000307435||1),DOWNSTREAM(MODIFIER||||464|FAM90A1|protein_coding|CODING|ENST00000538603||1),DOWNSTREAM(MODIFIER|||||FAM66C|antisense|NON_CODING|ENST00000372173||1),DOWNSTREAM(MODIFIER|||||FAM66C|antisense|NON_CODING|ENST00000454799||1),INTRON(MODIFIER|||||RP11-266K4.1|processed_transcript|NON_CODING|ENST00000542600|1|1);RSPOS=8369052;dbSNPBuildID=131;SSR=0;SAO=0;VP=050000000001040102000100;WGT=1;VC=SNV;VLD;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:0:0:0:0,0:0,0:31,31:0,0	91:1:0:0:11,13:0,0:79,79:0,0
12	8369063	rs74709053	G	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||464|FAM90A1|protein_coding|CODING|ENST00000307435||1),DOWNSTREAM(MODIFIER||||464|FAM90A1|protein_coding|CODING|ENST00000538603||1),DOWNSTREAM(MODIFIER|||||FAM66C|antisense|NON_CODING|ENST00000372173||1),DOWNSTREAM(MODIFIER|||||FAM66C|antisense|NON_CODING|ENST00000454799||1),INTRON(MODIFIER|||||RP11-266K4.1|processed_transcript|NON_CODING|ENST00000542600|1|1);RSPOS=8369063;dbSNPBuildID=131;SSR=0;SAO=0;VP=050000000001040102000100;WGT=1;VC=SNV;VLD;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:0:0:0:0,0:0,0:29,29:0,0	91:3:0:0:0,0:0,0:76,77:12,14
12	8372222	.	C	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->CG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=DOWNSTREAM(MODIFIER||||464|FAM90A1|protein_coding|CODING|ENST00000307435||1),DOWNSTREAM(MODIFIER||||464|FAM90A1|protein_coding|CODING|ENST00000538603||1),DOWNSTREAM(MODIFIER|||||FAM66C|antisense|NON_CODING|ENST00000372173||1),DOWNSTREAM(MODIFIER|||||FAM66C|antisense|NON_CODING|ENST00000454799||1),INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||RP11-266K4.1|processed_transcript|NON_CODING|ENST00000542600||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:0:0:0:0,0:34,34:0,1:1,1	60:1:0:0:0,0:53,54:6,7:0,0
12	8387861	.	C	G	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->CG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=DOWNSTREAM(MODIFIER|||||ALG1L2|unprocessed_pseudogene|NON_CODING|ENST00000437882||1),EXON(MODIFIER|||||FAM86FP|processed_transcript|NON_CODING|ENST00000427893|6|1),EXON(MODIFIER|||||FAM86FP|transcribed_unprocessed_pseudogene|NON_CODING|ENST00000338711|6|1),UPSTREAM(MODIFIER|||||RP11-266K4.9|lincRNA|NON_CODING|ENST00000304751||1),UPSTREAM(MODIFIER|||||RP11-266K4.9|lincRNA|NON_CODING|ENST00000399866||1),UPSTREAM(MODIFIER|||||RP11-266K4.9|lincRNA|NON_CODING|ENST00000536034||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	43:0:0:0:0,0:43,43:0,1:0,0	84:0:0:0:0,0:79,81:5,8:0,0
12	8539800	.	G	A	.	PASS	NT=ref;QSS=26;QSS_NT=26;SGT=GG->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=EXON(MODIFIER|||||RP11-90D4.2|processed_transcript|NON_CODING|ENST00000538304|4|1),INTRON(MODIFIER|||||RP11-90D4.2|processed_transcript|NON_CODING|ENST00000420040|1|1),INTRON(MODIFIER|||||RP11-90D4.2|processed_transcript|NON_CODING|ENST00000536539|1|1),INTRON(MODIFIER|||||RP11-90D4.2|processed_transcript|NON_CODING|ENST00000536864|3|1),INTRON(MODIFIER|||||RP11-90D4.2|processed_transcript|NON_CODING|ENST00000539348|1|1),INTRON(MODIFIER|||||RP11-90D4.2|processed_transcript|NON_CODING|ENST00000544461|2|1),UPSTREAM(MODIFIER|||||RP11-90D4.2|processed_transcript|NON_CODING|ENST00000536560||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:0:0:0:0,1:0,0:30,31:0,0	87:0:0:0:18,20:0,0:69,71:0,0
12	8539812	.	C	G	.	PASS	NT=ref;QSS=26;QSS_NT=26;SGT=CC->CG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=EXON(MODIFIER|||||RP11-90D4.2|processed_transcript|NON_CODING|ENST00000538304|4|1),INTRON(MODIFIER|||||RP11-90D4.2|processed_transcript|NON_CODING|ENST00000420040|1|1),INTRON(MODIFIER|||||RP11-90D4.2|processed_transcript|NON_CODING|ENST00000536539|1|1),INTRON(MODIFIER|||||RP11-90D4.2|processed_transcript|NON_CODING|ENST00000536864|3|1),INTRON(MODIFIER|||||RP11-90D4.2|processed_transcript|NON_CODING|ENST00000539348|1|1),INTRON(MODIFIER|||||RP11-90D4.2|processed_transcript|NON_CODING|ENST00000544461|2|1),UPSTREAM(MODIFIER|||||RP11-90D4.2|processed_transcript|NON_CODING|ENST00000536560||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:0:0:0:0,0:30,31:0,1:0,0	90:1:0:0:0,0:71,73:18,20:0,0
12	9036467	.	T	C	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	43:1:0:0:0,0:0,0:0,0:42,43	75:3:0:0:0,0:7,7:0,0:65,71
12	9558859	.	T	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-599J14.2|unprocessed_pseudogene|NON_CODING|ENST00000540982|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	27:2:0:0:0,0:0,1:0,1:25,42	47:0:0:0:0,0:5,6:0,0:42,78
12	9895455	.	C	G	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:1:0:0:0,0:35,36:0,0:0,0	87:0:0:0:0,0:83,83:4,4:0,0
12	10291959	.	A	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:0:0:0:32,32:0,0:0,0:0,0	59:0:0:0:55,56:0,0:4,4:0,0
12	10534393	.	G	A	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||216|KLRK1|protein_coding|CODING|ENST00000240618|3|1),INTRON(MODIFIER||||216|KLRK1|protein_coding|CODING|ENST00000540818|2|1),INTRON(MODIFIER|||||KLRC4-KLRK1|nonsense_mediated_decay|NON_CODING|ENST00000543572|5|1),INTRON(MODIFIER|||||KLRC4-KLRK1|nonsense_mediated_decay|NON_CODING|ENST00000543812|8|1),INTRON(MODIFIER|||||KLRC4-KLRK1|nonsense_mediated_decay|NON_CODING|ENST00000585507|10|1),INTRON(MODIFIER|||||KLRC4-KLRK1|nonsense_mediated_decay|NON_CODING|ENST00000585711|4|1),INTRON(MODIFIER|||||KLRC4-KLRK1|nonsense_mediated_decay|NON_CODING|ENST00000588263|7|1),INTRON(MODIFIER|||||KLRC4-KLRK1|nonsense_mediated_decay|NON_CODING|ENST00000588447|9|1),INTRON(MODIFIER|||||KLRC4-KLRK1|nonsense_mediated_decay|NON_CODING|ENST00000590131|6|1),INTRON(MODIFIER|||||KLRC4-KLRK1|nonsense_mediated_decay|NON_CODING|ENST00000590323|9|1),INTRON(MODIFIER|||||KLRC4-KLRK1|nonsense_mediated_decay|NON_CODING|ENST00000591546|5|1),INTRON(MODIFIER|||||KLRC4-KLRK1|nonsense_mediated_decay|NON_CODING|ENST00000591937|10|1),INTRON(MODIFIER|||||KLRC4-KLRK1|retained_intron|NON_CODING|ENST00000539370|6|1),INTRON(MODIFIER|||||KLRK1|nonsense_mediated_decay|CODING|ENST00000396451|4|1),INTRON(MODIFIER|||||KLRK1|retained_intron|CODING|ENST00000540267|1|1),INTRON(MODIFIER|||||KLRK1|retained_intron|CODING|ENST00000544449|3|1),INTRON(MODIFIER|||||RP11-277P12.20|lincRNA|NON_CODING|ENST00000500682|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:1:0:0:0,0:0,0:38,39:0,0	70:0:0:0:5,5:0,0:65,65:0,0
12	12263642	.	G	A	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||276|BCL2L14|protein_coding|CODING|ENST00000396369|4|1),INTRON(MODIFIER|||||BCL2L14|nonsense_mediated_decay|CODING|ENST00000298566|3|1),UPSTREAM(MODIFIER|||||RP11-267J23.4|processed_pseudogene|NON_CODING|ENST00000539347||1),UPSTREAM(MODIFIER|||||RP11-267J23.4|pseudogene|NON_CODING|ENST00000358818||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:0:0:0:0,0:0,0:39,41:0,0	70:1:0:0:5,5:0,0:64,67:0,0
12	12339515	.	G	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||74|LRP6|protein_coding|CODING|ENST00000535731||1),DOWNSTREAM(MODIFIER|||||LRP6|retained_intron|CODING|ENST00000545658||1),INTRON(MODIFIER||||1568|LRP6|protein_coding|CODING|ENST00000543091|4|1),INTRON(MODIFIER||||1613|LRP6|protein_coding|CODING|ENST00000261349|4|1),INTRON(MODIFIER|||||BCL2L14|nonsense_mediated_decay|CODING|ENST00000298566|5|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:1:0:0:0,0:1,1:30,31:0,0	62:2:0:0:0,0:0,0:55,57:5,5
12	12749356	.	G	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:0:0:0:0,0:0,0:32,32:0,0	74:1:0:0:5,5:0,0:68,70:0,0
12	13798115	.	T	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1484|GRIN2B|protein_coding|CODING|ENST00000279593|4|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	28:0:0:0:0,0:0,0:0,0:28,28	82:1:0:0:0,0:0,0:5,5:76,77
12	13960670	.	G	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1484|GRIN2B|protein_coding|CODING|ENST00000279593|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	17:0:1:0:0,0:1,1:16,16:0,0	24:2:8:0:0,0:0,0:17,18:5,6
12	15561402	.	G	A	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1188|PTPRO|protein_coding|CODING|ENST00000348962|1|1),INTRON(MODIFIER||||1216|PTPRO|protein_coding|CODING|ENST00000281171|1|1),INTRON(MODIFIER||||597|PTPRO|protein_coding|CODING|ENST00000543886|1|1),INTRON(MODIFIER|||||PTPRO|processed_transcript|CODING|ENST00000545023|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:0:0:0:0,0:0,0:33,33:0,0	66:0:0:0:5,5:1,1:60,60:0,0
12	17228774	rs146285492	G	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||U6|snRNA|NON_CODING|ENST00000391056||1);RSPOS=17228774;dbSNPBuildID=134;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	27:1:0:0:0,0:0,0:26,29:0,0	69:0:0:0:9,11:0,0:60,67:0,0
12	19027356	.	T	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:0:0:0:0,0:0,0:1,1:32,32	59:0:0:0:0,0:5,5:0,0:54,54
12	19765610	.	C	T	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||130|AEBP2|protein_coding|CODING|ENST00000512223|4|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:0:0:0:0,0:38,38:0,0:0,0	73:0:0:0:0,0:66,66:0,0:7,7
12	22255659	.	C	A	.	PASS	NT=ref;QSS=21;QSS_NT=18;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||ST8SIA1|processed_transcript|CODING|ENST00000537795||1),DOWNSTREAM(MODIFIER|||||ST8SIA1|processed_transcript|CODING|ENST00000545524||1),INTRON(MODIFIER|||||ST8SIA1|processed_transcript|CODING|ENST00000544732|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	43:0:0:0:0,0:40,40:0,0:3,3	79:3:0:0:7,7:68,71:0,0:1,1
12	22290159	.	G	A	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||ST8SIA1|processed_transcript|CODING|ENST00000544732|2|1),INTRON(MODIFIER|||||ST8SIA1|processed_transcript|CODING|ENST00000545524|4|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:0:0:0:0,0:0,0:37,45:0,0	88:0:0:0:7,10:0,0:81,97:0,0
12	24750605	.	C	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:0:0:0:0,0:30,30:0,0:0,0	69:0:0:0:6,6:63,63:0,0:0,0
12	25504677	.	C	A	.	PASS	NT=ref;QSS=24;QSS_NT=24;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:0:0:0:0,0:37,38:0,0:0,0	49:0:0:0:8,8:41,41:0,0:0,0
12	25611782	.	T	C	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	41:1:0:0:0,0:0,0:0,0:40,41	69:0:0:0:0,0:7,7:0,0:62,62
12	26456786	.	G	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||SSPN|processed_transcript|CODING|ENST00000534829||1),INTRON(MODIFIER|||||RP11-283G6.4|antisense|NON_CODING|ENST00000540392|2|1),INTRON(MODIFIER|||||RP11-283G6.5|antisense|NON_CODING|ENST00000540625|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:0:0:0:0,0:1,1:33,33:0,0	65:0:0:0:4,4:0,0:61,61:0,0
12	26803614	.	C	G	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||RP11-666F17.1|antisense|NON_CODING|ENST00000414098||1),INTRON(MODIFIER||||2701|ITPR2|protein_coding|CODING|ENST00000381340|21|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:0:0:0:0,0:34,34:0,0:0,0	78:1:0:0:0,0:70,71:5,5:2,2
12	27968785	.	C	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:0:0:0:0,0:31,31:0,0:0,0	79:1:0:0:0,0:71,71:0,0:7,8
12	28218627	.	T	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:0:0:0:0,0:0,0:0,0:30,30	72:1:0:0:0,1:6,6:0,0:65,65
12	28689407	.	T	A	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||405|CCDC91|protein_coding|CODING|ENST00000381256|10|1),INTRON(MODIFIER||||405|CCDC91|protein_coding|CODING|ENST00000539107|11|1),INTRON(MODIFIER||||411|CCDC91|protein_coding|CODING|ENST00000306172|10|1),INTRON(MODIFIER||||441|CCDC91|protein_coding|CODING|ENST00000381259|11|1),INTRON(MODIFIER||||441|CCDC91|protein_coding|CODING|ENST00000545336|15|1),INTRON(MODIFIER|||||CCDC91|nonsense_mediated_decay|CODING|ENST00000535520|14|1),INTRON(MODIFIER|||||CCDC91|nonsense_mediated_decay|CODING|ENST00000543809|13|1),INTRON(MODIFIER|||||CCDC91|processed_transcript|CODING|ENST00000540401|11|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	42:0:0:0:0,0:0,0:0,0:42,42	72:1:0:0:4,4:0,0:0,0:67,69
12	28759147	.	C	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:1:0:0:0,0:28,29:0,0:0,1	67:0:0:0:4,4:63,63:0,0:0,0
12	30528690	.	G	C	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:0:0:0:0,0:0,0:35,35:0,0	69:0:0:0:0,0:6,6:62,62:1,1
12	31198725	.	C	T	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||DDX11-AS1|processed_transcript|NON_CODING|ENST00000500527|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:0:0:0:0,0:38,38:0,0:0,0	85:1:0:0:0,0:78,79:0,0:6,6
12	31963176	.	G	A	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||SNORA25|snoRNA|NON_CODING|ENST00000516395||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:0:0:0:0,0:0,0:34,34:1,1	71:3:0:0:6,6:1,1:60,63:1,2
12	32200111	.	G	A	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	42:2:0:0:0,0:0,0:39,42:1,1	88:3:0:0:6,6:0,0:79,83:0,0
12	32200129	.	A	T	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:2:0:0:36,39:1,1:0,0:0,0	88:1:0:0:74,77:6,6:1,1:6,6
12	33444658	.	C	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:1:0:0:0,0:29,31:0,0:0,0	82:1:0:0:0,0:74,76:0,0:7,7
12	33642782	.	C	T	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:0:0:0:0,0:36,36:0,0:0,0	70:0:0:0:0,0:62,62:0,0:8,8
12	34027102	.	A	C	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:0:0:0:34,35:0,0:0,0:0,0	80:2:0:0:71,73:7,7:0,0:0,0
12	34359104	.	G	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||RNA5SP357|rRNA|NON_CODING|ENST00000362784||1),DOWNSTREAM(MODIFIER|||||RP11-313F23.5|processed_pseudogene|NON_CODING|ENST00000554796||1),INTRON(MODIFIER|||||RP11-313F23.4|lincRNA|NON_CODING|ENST00000545923|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:0:0:0:0,0:0,0:31,36:0,0	62:1:0:0:6,6:0,0:55,63:0,0
12	34509301	.	T	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:0:0:0:0,0:1,1:0,0:38,38	71:1:0:0:0,0:12,13:0,0:58,58
12	34514192	rs56371814	A	G	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=34514192;GMAF=0.0224;dbSNPBuildID=129;SSR=0;SAO=0;VP=050000000001070016000100;WGT=1;VC=SNV;VLD;G5A;G5;KGPhase1;KGPROD;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:1:0:0:35,36:1,1:0,0:0,0	80:2:0:0:70,71:1,1:7,10:0,0
12	34523699	.	A	C	.	PASS	NT=ref;QSS=25;QSS_NT=25;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:1:0:0:37,38:0,0:0,0:0,0	84:2:0:0:67,69:15,16:0,0:0,0
12	34551502	.	G	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:1:0:0:0,0:0,0:34,36:0,0	63:1:0:0:4,4:0,0:58,59:0,0
12	34705619	.	T	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:2:0:0:0,1:0,1:0,0:30,80	91:12:0:0:8,19:0,0:0,0:71,179
12	34833031	.	C	T	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	84:21:0:0:0,0:62,163:0,0:1,2	174:23:0:0:0,0:144,320:0,0:7,12
12	34842997	.	C	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:2:0:0:0,0:37,49:0,0:0,1	111:7:0:0:0,0:98,130:1,1:5,8
12	37899114	rs75594162	T	C	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=37899114;dbSNPBuildID=131;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:1:0:0:0,0:0,0:0,0:37,38	83:0:0:0:0,0:6,9:0,0:77,77
12	37899126	rs78738422	G	A	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=37899126;dbSNPBuildID=131;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:2:0:0:0,0:0,0:36,37:0,0	76:0:0:0:5,6:0,0:71,71:0,0
12	37904436	rs78456839	G	C	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=37904436;dbSNPBuildID=131;SSR=0;SAO=0;VP=050000000009000102000100;WGT=1;VC=SNV;CFL;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:1:0:0:0,0:0,1:29,31:0,0	75:0:0:0:0,0:11,14:64,65:0,0
12	37904443	rs74972024	T	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=37904443;dbSNPBuildID=131;SSR=0;SAO=0;VP=050000000009000102000100;WGT=1;VC=SNV;CFL;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:1:0:0:0,0:0,0:0,0:31,33	76:2:0:0:0,0:9,11:0,0:65,68
12	37916340	rs200175617	C	T	.	PASS	NT=ref;QSS=30;QSS_NT=30;SGT=CC->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=37916340;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:0:0:0:0,0:38,41:0,0:0,3	86:1:0:0:0,0:69,69:0,0:16,24
12	37916350	rs201038434	G	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=37916350;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:0:0:0:0,3:0,0:39,41:0,0	91:0:0:0:15,22:0,0:76,76:0,0
12	37927421	.	C	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	27:0:0:0:0,0:27,29:0,0:0,0	66:0:0:0:4,4:62,62:0,0:0,0
12	37952953	rs113614239	G	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=37952953;dbSNPBuildID=132;SSR=0;SAO=0;VP=050000000001000002000100;WGT=1;VC=SNV;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	49:0:0:0:1,1:0,0:48,50:0,0	72:1:0:0:6,8:0,0:65,66:0,0
12	37997079	rs75232691	G	A	.	PASS	NT=ref;QSS=30;QSS_NT=30;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=37997079;dbSNPBuildID=131;SSR=0;SAO=0;VP=050000000005000102000100;WGT=1;VC=SNV;ASP;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	72:11:0:0:0,3:0,2:61,244:0,0	188:30:1:0:8,22:0,9:150,536:0,1
12	37999726	.	A	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	90:15:0:0:75,308:0,0:0,6:0,1	159:31:0:0:122,634:1,1:5,30:0,1
12	38001381	.	G	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:1:0:0:0,0:0,0:29,34:0,0	67:3:0:0:6,11:0,0:58,66:0,0
12	38003424	.	C	A	.	PASS	NT=ref;QSS=23;QSS_NT=23;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	61:11:0:0:0,3:50,107:0,0:0,7	141:23:0:0:6,18:112,262:0,1:0,7
12	38031014	.	G	T	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	57:1:0:0:1,3:0,0:54,69:1,2	89:5:0:0:0,4:0,0:77,102:7,8
12	38034345	.	A	T	.	PASS	NT=ref;QSS=26;QSS_NT=26;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	59:7:0:0:52,99:0,0:0,4:0,0	133:17:0:0:107,186:0,0:2,6:7,10
12	38036426	.	C	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:0:0:0:0,0:31,32:0,0:0,4	77:0:0:0:0,0:72,75:4,9:1,7
12	38036801	.	G	T	.	PASS	NT=ref;QSS=32;QSS_NT=32;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	93:9:0:0:0,1:1,1:82,174:1,4	172:15:0:0:0,8:2,2:148,344:7,27
12	38100764	.	G	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:1:0:0:0,0:0,0:28,31:0,2	74:1:0:0:0,1:0,0:68,69:5,21
12	38120582	.	C	T	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	59:17:0:0:0,2:42,117:0,0:0,1	186:73:0:0:1,7:105,307:0,0:7,11
12	38167467	.	C	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	85:16:0:0:1,4:67,144:1,4:0,1	214:60:0:0:7,22:143,346:2,4:2,6
12	38389277	.	G	T	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	47:3:0:0:0,0:0,0:44,72:0,1	118:12:1:0:0,0:0,6:99,150:7,7
12	38399474	.	C	T	.	PASS	NT=ref;QSS=30;QSS_NT=30;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	75:14:0:0:0,1:61,138:0,0:0,1	166:41:0:0:0,4:116,301:0,0:9,15
12	38488710	.	C	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	28:0:0:0:0,0:28,28:0,0:0,0	74:0:0:0:5,5:69,69:0,0:0,0
12	38728648	.	T	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:1:0:0:0,0:0,0:0,1:31,31	71:1:0:0:0,0:7,9:0,0:63,64
12	40878778	rs185651200	G	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=EXON(MODIFIER|||||MUC19|processed_transcript|CODING|ENST00000454784|49|1);RSPOS=40878778;GMAF=0.0064;dbSNPBuildID=135;SSR=0;SAO=0;VP=050000000305000014000100;WGT=1;VC=SNV;REF;SYN;ASP;KGPhase1;KGPROD	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:0:0:0:0,0:0,0:40,40:0,0	77:0:0:0:4,4:1,1:71,71:1,1
12	40879630	.	T	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=EXON(MODIFIER|||||MUC19|processed_transcript|CODING|ENST00000454784|50|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:1:0:0:0,0:0,0:0,0:30,35	103:12:0:0:0,0:8,16:2,2:81,97
12	42480041	.	A	G	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||409|GXYLT1|protein_coding|CODING|ENST00000280876||1),UTR_3_PRIME(MODIFIER||||440|GXYLT1|protein_coding|CODING|ENST00000398675|8|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	42:1:0:0:41,42:0,0:0,0:0,0	81:0:0:0:71,72:0,0:10,13:0,0
12	42480113	.	T	G	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=TT->GT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=DOWNSTREAM(MODIFIER||||409|GXYLT1|protein_coding|CODING|ENST00000280876||1),UTR_3_PRIME(MODIFIER||||440|GXYLT1|protein_coding|CODING|ENST00000398675|8|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:0:0:0:0,0:0,0:0,1:40,40	85:2:0:0:0,0:0,0:9,14:74,74
12	42480114	.	T	G	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=TT->GT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=DOWNSTREAM(MODIFIER||||409|GXYLT1|protein_coding|CODING|ENST00000280876||1),UTR_3_PRIME(MODIFIER||||440|GXYLT1|protein_coding|CODING|ENST00000398675|8|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:0:0:0:0,0:0,0:0,1:39,39	85:2:0:0:0,0:0,0:10,15:73,73
12	42743749	.	C	G	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||160|PPHLN1|protein_coding|CODING|ENST00000546750|3|1),INTRON(MODIFIER||||167|PPHLN1|protein_coding|CODING|ENST00000547847|2|1),INTRON(MODIFIER||||303|PPHLN1|protein_coding|CODING|ENST00000317560|3|1),INTRON(MODIFIER||||319|PPHLN1|protein_coding|CODING|ENST00000552761|3|1),INTRON(MODIFIER||||340|PPHLN1|protein_coding|CODING|ENST00000337898|2|1),INTRON(MODIFIER||||348|PPHLN1|protein_coding|CODING|ENST00000449194|2|1),INTRON(MODIFIER||||363|PPHLN1|protein_coding|CODING|ENST00000256678|2|1),INTRON(MODIFIER||||367|PPHLN1|protein_coding|CODING|ENST00000358314|2|1),INTRON(MODIFIER||||36|PPHLN1|protein_coding|CODING|ENST00000551658|1|1),INTRON(MODIFIER||||374|PPHLN1|protein_coding|CODING|ENST00000395580|3|1),INTRON(MODIFIER||||385|PPHLN1|protein_coding|CODING|ENST00000549190|2|1),INTRON(MODIFIER||||434|PPHLN1|protein_coding|CODING|ENST00000432191|2|1),INTRON(MODIFIER||||458|PPHLN1|protein_coding|CODING|ENST00000395568|2|1),INTRON(MODIFIER|||||PPHLN1|nonsense_mediated_decay|CODING|ENST00000551723|3|1),INTRON(MODIFIER|||||PPHLN1|nonsense_mediated_decay|CODING|ENST00000552429|2|1),INTRON(MODIFIER|||||PPHLN1|processed_transcript|CODING|ENST00000550535|2|1),INTRON(MODIFIER|||||PPHLN1|retained_intron|CODING|ENST00000549774|2|1),INTRON(MODIFIER|||||PPHLN1|retained_intron|CODING|ENST00000551406|2|1),INTRON(MODIFIER|||||PPHLN1|retained_intron|CODING|ENST00000552202|3|1),UPSTREAM(MODIFIER|||||PPHLN1|processed_transcript|CODING|ENST00000552794||1),UPSTREAM(MODIFIER|||||SNORA74|snoRNA|NON_CODING|ENST00000517108||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:0:0:0:0,0:37,37:0,0:0,0	97:3:0:0:0,0:88,92:6,6:0,0
12	43010569	.	G	A	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-609L23.1|lincRNA|NON_CODING|ENST00000550337|5|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:0:0:0:0,0:0,0:33,33:0,0	74:0:0:0:10,10:0,0:64,65:0,0
12	44614254	.	A	C	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||268|TMEM117|protein_coding|CODING|ENST00000551577|5|1),INTRON(MODIFIER||||410|TMEM117|protein_coding|CODING|ENST00000536799|3|1),INTRON(MODIFIER||||514|TMEM117|protein_coding|CODING|ENST00000266534|5|1),INTRON(MODIFIER|||||TMEM117|nonsense_mediated_decay|CODING|ENST00000546868|4|1),INTRON(MODIFIER|||||TMEM117|processed_transcript|CODING|ENST00000550623|4|1),INTRON(MODIFIER|||||TMEM117|processed_transcript|CODING|ENST00000553253|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:0:0:0:32,34:0,0:0,0:0,0	87:0:0:0:76,77:11,11:0,0:0,0
12	44941724	.	A	C	.	PASS	NT=ref;QSS=26;QSS_NT=26;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||768|NELL2|protein_coding|CODING|ENST00000551601|17|1),INTRON(MODIFIER||||815|NELL2|protein_coding|CODING|ENST00000395487|15|1),INTRON(MODIFIER||||815|NELL2|protein_coding|CODING|ENST00000549027|17|1),INTRON(MODIFIER||||816|NELL2|protein_coding|CODING|ENST00000429094|15|1),INTRON(MODIFIER||||816|NELL2|protein_coding|CODING|ENST00000452445|16|1),INTRON(MODIFIER||||839|NELL2|protein_coding|CODING|ENST00000333837|16|1),INTRON(MODIFIER||||866|NELL2|protein_coding|CODING|ENST00000437801|16|1),INTRON(MODIFIER|||||NELL2|retained_intron|CODING|ENST00000549668|4|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	52:1:0:0:51,52:0,0:0,0:0,0	84:0:0:0:77,77:7,7:0,0:0,0
12	45769411	.	G	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->GT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER||||892|ANO6|protein_coding|CODING|ENST00000441606|9|1),INTRON(MODIFIER||||910|ANO6|protein_coding|CODING|ENST00000320560|9|1),INTRON(MODIFIER||||929|ANO6|protein_coding|CODING|ENST00000425752|9|1),INTRON(MODIFIER||||929|ANO6|protein_coding|CODING|ENST00000435642|10|1),INTRON(MODIFIER||||931|ANO6|protein_coding|CODING|ENST00000423947|10|1),INTRON(MODIFIER|||||ANO6|processed_transcript|CODING|ENST00000426898|8|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:0:0:0:0,0:0,0:38,39:0,1	80:0:0:0:0,0:0,0:75,79:5,9
12	46279404	.	C	G	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1445|ARID2|protein_coding|CODING|ENST00000444670|8|1),INTRON(MODIFIER||||1639|ARID2|protein_coding|CODING|ENST00000422737|16|1),INTRON(MODIFIER||||1835|ARID2|protein_coding|CODING|ENST00000334344|16|1),INTRON(MODIFIER||||401|ARID2|protein_coding|CODING|ENST00000457135|2|1),INTRON(MODIFIER||||952|ARID2|protein_coding|CODING|ENST00000549153|7|1),INTRON(MODIFIER|||||ARID2|processed_transcript|CODING|ENST00000479608|10|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	43:1:0:0:0,0:41,42:0,0:1,1	65:0:0:0:0,0:58,58:7,7:0,0
12	46609822	.	C	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||487|SLC38A1|protein_coding|CODING|ENST00000398637|5|1),INTRON(MODIFIER||||487|SLC38A1|protein_coding|CODING|ENST00000439706|6|1),INTRON(MODIFIER||||487|SLC38A1|protein_coding|CODING|ENST00000546893|5|1),INTRON(MODIFIER||||487|SLC38A1|protein_coding|CODING|ENST00000549049|4|1),INTRON(MODIFIER||||503|SLC38A1|protein_coding|CODING|ENST00000552197|5|1),INTRON(MODIFIER|||||SLC38A1|processed_transcript|CODING|ENST00000549633|3|1),INTRON(MODIFIER|||||SLC38A1|processed_transcript|CODING|ENST00000551506|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:1:0:0:0,0:32,33:0,0:0,0	80:1:0:0:6,6:73,74:0,0:0,0
12	46719866	.	G	A	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:1:0:0:0,0:0,0:38,39:0,1	81:0:0:0:8,8:0,0:73,73:0,0
12	47015460	.	A	G	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:0:0:0:37,37:0,0:0,0:0,0	61:0:0:0:55,56:0,0:6,6:0,0
12	47989118	.	C	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->AC;SOMATIC;TQSS=2;TQSS_NT=2;EFF=DOWNSTREAM(MODIFIER|||||RP3-432I18.1|processed_pseudogene|NON_CODING|ENST00000546846||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	43:0:0:0:0,1:43,43:0,0:0,0	62:3:0:0:8,8:51,54:0,0:0,0
12	49574508	.	A	G	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||109|TUBA1A|protein_coding|CODING|ENST00000552250||1),DOWNSTREAM(MODIFIER||||182|TUBA1A|protein_coding|CODING|ENST00000552597||1),DOWNSTREAM(MODIFIER||||218|TUBA1A|protein_coding|CODING|ENST00000547939||1),DOWNSTREAM(MODIFIER||||231|TUBA1A|protein_coding|CODING|ENST00000546918||1),DOWNSTREAM(MODIFIER||||298|TUBA1A|protein_coding|CODING|ENST00000548405||1),DOWNSTREAM(MODIFIER||||416|TUBA1A|protein_coding|CODING|ENST00000550767||1),DOWNSTREAM(MODIFIER||||451|TUBA1A|protein_coding|CODING|ENST00000295766||1),DOWNSTREAM(MODIFIER||||451|TUBA1A|protein_coding|CODING|ENST00000301071||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:1:0:0:35,36:0,0:0,0:0,0	60:0:0:0:53,54:0,0:7,7:0,0
12	50858396	.	G	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||375|LARP4|protein_coding|CODING|ENST00000518561||1),DOWNSTREAM(MODIFIER||||445|LARP4|protein_coding|CODING|ENST00000522085||1),INTRON(MODIFIER||||605|LARP4|protein_coding|CODING|ENST00000520064|10|1),INTRON(MODIFIER||||653|LARP4|protein_coding|CODING|ENST00000293618|11|1),INTRON(MODIFIER||||653|LARP4|protein_coding|CODING|ENST00000347328|11|1),INTRON(MODIFIER||||723|LARP4|protein_coding|CODING|ENST00000518444|12|1),INTRON(MODIFIER||||724|LARP4|protein_coding|CODING|ENST00000398473|12|1),INTRON(MODIFIER||||730|LARP4|protein_coding|CODING|ENST00000429001|12|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:1:0:0:0,0:0,0:28,28:0,1	57:0:0:0:4,4:0,0:53,53:0,0
12	50858402	.	C	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||375|LARP4|protein_coding|CODING|ENST00000518561||1),DOWNSTREAM(MODIFIER||||445|LARP4|protein_coding|CODING|ENST00000522085||1),INTRON(MODIFIER||||605|LARP4|protein_coding|CODING|ENST00000520064|10|1),INTRON(MODIFIER||||653|LARP4|protein_coding|CODING|ENST00000293618|11|1),INTRON(MODIFIER||||653|LARP4|protein_coding|CODING|ENST00000347328|11|1),INTRON(MODIFIER||||723|LARP4|protein_coding|CODING|ENST00000518444|12|1),INTRON(MODIFIER||||724|LARP4|protein_coding|CODING|ENST00000398473|12|1),INTRON(MODIFIER||||730|LARP4|protein_coding|CODING|ENST00000429001|12|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:1:0:0:0,0:29,30:0,0:0,0	59:0:0:0:0,0:54,54:0,0:5,5
12	51428313	.	G	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||U6|snRNA|NON_CODING|ENST00000363033||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:0:0:0:0,0:0,0:31,31:0,0	78:0:0:0:5,5:0,0:73,73:0,0
12	51505402	.	C	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||RP11-416A17.1|processed_pseudogene|NON_CODING|ENST00000469738||1),INTRON(MODIFIER||||380|TFCP2|protein_coding|CODING|ENST00000548108|4|1),INTRON(MODIFIER||||424|TFCP2|protein_coding|CODING|ENST00000549867|5|1),INTRON(MODIFIER||||450|TFCP2|protein_coding|CODING|ENST00000548115|4|1),INTRON(MODIFIER||||451|TFCP2|protein_coding|CODING|ENST00000307660|4|1),INTRON(MODIFIER||||502|TFCP2|protein_coding|CODING|ENST00000257915|4|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	45:1:0:0:0,0:43,43:1,1:0,1	65:1:0:0:0,0:59,61:5,5:0,0
12	52899391	.	C	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:1:0:0:0,0:35,42:0,0:0,2	84:3:0:0:0,1:70,74:0,0:11,14
12	52899392	.	T	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:1:0:0:0,0:0,2:1,1:34,41	84:3:0:0:0,0:11,14:0,0:70,75
12	53388416	.	T	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:1:0:0:0,0:0,0:0,0:29,30	68:1:0:0:0,0:6,6:0,0:61,63
12	54497799	rs4016682	A	G	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||RP11-834C11.6|lincRNA|NON_CODING|ENST00000504891||1),INTRON(MODIFIER|||||RP11-834C11.3|lincRNA|NON_CODING|ENST00000515617|1|1),INTRON(MODIFIER|||||RP11-834C11.5|lincRNA|NON_CODING|ENST00000513381|2|1),UPSTREAM(MODIFIER|||||Y_RNA|misc_RNA|NON_CODING|ENST00000365276||1);RSPOS=54497799;RV;dbSNPBuildID=108;SSR=0;SAO=0;VP=050100080001000002000100;GENEINFO=FLJ12825:440101;WGT=1;VC=SNV;SLO;INT;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:0:0:0:37,38:0,0:0,0:0,0	83:1:0:0:68,70:3,3:11,12:0,0
12	54518095	rs74092916	C	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=DOWNSTREAM(MODIFIER|||||RP11-834C11.3|lincRNA|NON_CODING|ENST00000515617||1),INTRON(MODIFIER|||||RP11-834C11.5|lincRNA|NON_CODING|ENST00000504278|1|1),INTRON(MODIFIER|||||RP11-834C11.5|lincRNA|NON_CODING|ENST00000508763|1|1),INTRON(MODIFIER|||||RP11-834C11.5|lincRNA|NON_CODING|ENST00000513381|1|1),INTRON(MODIFIER|||||RP11-834C11.5|retained_intron|NON_CODING|ENST00000505661|1|1),UPSTREAM(MODIFIER|||||RP11-834C11.4|lincRNA|NON_CODING|ENST00000508564||1);RSPOS=54518095;dbSNPBuildID=130;SSR=0;SAO=0;VP=050100000005040102000100;WGT=1;VC=SNV;SLO;ASP;VLD;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:0:0:0:0,0:36,36:0,0:0,2	81:0:0:0:0,0:71,73:0,0:10,14
12	55089180	.	A	G	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:3:0:0:31,35:0,0:0,0:0,0	84:7:0:0:72,79:0,0:5,8:0,0
12	55605288	rs200490638	G	A	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=55605288;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	45:1:0:0:0,0:0,1:44,58:0,0	73:0:0:0:6,8:0,0:67,98:0,0
12	55636180	.	T	G	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER||||312|OR6C74|protein_coding|CODING|ENST00000343870||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	28:1:0:0:0,0:0,1:0,0:27,27	62:0:0:0:0,0:0,0:9,10:53,53
12	56353576	.	G	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||PMEL|retained_intron|CODING|ENST00000549413||1),INTRON(MODIFIER||||133|PMEL|protein_coding|CODING|ENST00000549233|4|1),INTRON(MODIFIER||||150|PMEL|protein_coding|CODING|ENST00000549418|4|1),INTRON(MODIFIER||||290|PMEL|protein_coding|CODING|ENST00000550447|2|1),INTRON(MODIFIER||||295|PMEL|protein_coding|CODING|ENST00000548803|3|1),INTRON(MODIFIER||||298|PMEL|protein_coding|CODING|ENST00000546543|2|1),INTRON(MODIFIER||||343|PMEL|protein_coding|CODING|ENST00000547137|3|1),INTRON(MODIFIER||||575|PMEL|protein_coding|CODING|ENST00000539511|2|1),INTRON(MODIFIER||||575|PMEL|protein_coding|CODING|ENST00000550464|1|1),INTRON(MODIFIER||||626|PMEL|protein_coding|CODING|ENST00000536427|4|1),INTRON(MODIFIER||||661|PMEL|protein_coding|CODING|ENST00000548493|4|1),INTRON(MODIFIER||||661|PMEL|protein_coding|CODING|ENST00000548747|3|1),INTRON(MODIFIER||||661|PMEL|protein_coding|CODING|ENST00000552882|4|1),INTRON(MODIFIER||||668|PMEL|protein_coding|CODING|ENST00000360714|4|1),INTRON(MODIFIER||||668|PMEL|protein_coding|CODING|ENST00000449260|3|1),INTRON(MODIFIER|||||PMEL|processed_transcript|CODING|ENST00000548689|3|1),INTRON(MODIFIER|||||PMEL|retained_intron|CODING|ENST00000549430|3|1),INTRON(MODIFIER|||||PMEL|retained_intron|CODING|ENST00000550590|3|1),UPSTREAM(MODIFIER|||||PMEL|nonsense_mediated_decay|CODING|ENST00000549564||1),UPSTREAM(MODIFIER|||||PMEL|retained_intron|CODING|ENST00000550762||1),UPSTREAM(MODIFIER|||||PMEL|retained_intron|CODING|ENST00000556802||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:0:0:0:0,0:0,0:35,35:0,0	85:0:0:0:0,0:7,7:78,81:0,0
12	56944618	.	T	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||262|RBMS2|protein_coding|CODING|ENST00000542360|1|1),INTRON(MODIFIER||||282|RBMS2|protein_coding|CODING|ENST00000550726|1|1),INTRON(MODIFIER||||344|RBMS2|protein_coding|CODING|ENST00000552247|1|1),INTRON(MODIFIER||||407|RBMS2|protein_coding|CODING|ENST00000262031|1|1),INTRON(MODIFIER|||||RBMS2|nonsense_mediated_decay|CODING|ENST00000545007|1|1),INTRON(MODIFIER|||||RBMS2|nonsense_mediated_decay|CODING|ENST00000551369|2|1),INTRON(MODIFIER|||||RBMS2|nonsense_mediated_decay|CODING|ENST00000552916|1|1),INTRON(MODIFIER|||||RBMS2|processed_transcript|CODING|ENST00000549945|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:3:0:0:0,1:0,0:0,0:28,30	73:7:0:0:1,4:6,6:0,0:59,63
12	57172748	.	C	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||74|HSD17B6|protein_coding|CODING|ENST00000556650||1),DOWNSTREAM(MODIFIER||||87|HSD17B6|protein_coding|CODING|ENST00000554155||1),INTRON(MODIFIER||||317|HSD17B6|protein_coding|CODING|ENST00000322165|2|1),INTRON(MODIFIER||||317|HSD17B6|protein_coding|CODING|ENST00000554150|3|1),INTRON(MODIFIER||||317|HSD17B6|protein_coding|CODING|ENST00000554643|3|1),INTRON(MODIFIER||||317|HSD17B6|protein_coding|CODING|ENST00000555159|2|1),INTRON(MODIFIER||||317|HSD17B6|protein_coding|CODING|ENST00000555805|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:0:0:0:0,0:31,32:0,0:0,0	68:0:0:0:0,0:63,66:0,0:5,5
12	57284003	.	A	C	.	PASS	NT=ref;QSS=31;QSS_NT=31;SGT=AA->AC;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:3:0:0:29,32:0,0:0,0:0,0	58:7:0:0:38,46:13,13:0,0:0,0
12	57810576	.	G	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||U6|snRNA|NON_CODING|ENST00000364328||1),INTRON(MODIFIER||||28|R3HDM2|protein_coding|CODING|ENST00000448732|1|1),INTRON(MODIFIER||||976|R3HDM2|protein_coding|CODING|ENST00000347140|1|1),INTRON(MODIFIER||||990|R3HDM2|protein_coding|CODING|ENST00000402412|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:0:0:0:0,0:0,0:32,33:0,0	62:2:0:0:7,7:0,0:53,56:0,0
12	59023008	.	G	C	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=GG->CG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER||||123|RP11-362K2.2|protein_coding|CODING|ENST00000546977|1|1),INTRON(MODIFIER|||||RP11-362K2.2|processed_transcript|CODING|ENST00000548576|1|1),INTRON(MODIFIER|||||RP11-767I20.1|lincRNA|NON_CODING|ENST00000550678|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:0:0:0:0,0:0,0:37,37:0,0	58:2:0:0:0,0:5,5:51,53:0,0
12	59078814	.	C	T	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||123|RP11-362K2.2|protein_coding|CODING|ENST00000546977|1|1),INTRON(MODIFIER|||||RP11-362K2.2|processed_transcript|CODING|ENST00000548576|1|1),INTRON(MODIFIER|||||RP11-767I20.1|lincRNA|NON_CODING|ENST00000550678|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	41:0:0:0:0,0:41,41:0,0:0,0	82:1:0:0:0,0:76,77:0,0:5,5
12	59995672	.	A	T	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||478|SLC16A7|protein_coding|CODING|ENST00000547379|1|1),INTRON(MODIFIER||||478|SLC16A7|protein_coding|CODING|ENST00000552024|1|1),INTRON(MODIFIER||||478|SLC16A7|protein_coding|CODING|ENST00000552432|1|1),INTRON(MODIFIER||||78|SLC16A7|protein_coding|CODING|ENST00000549465|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	41:2:0:0:39,41:0,1:0,0:0,0	68:0:0:0:63,64:0,0:0,0:5,5
12	60205386	.	A	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||RP11-813P10.2|processed_pseudogene|NON_CODING|ENST00000549280||1),UPSTREAM(MODIFIER|||||RP11-813P10.2|retrotransposed|NON_CODING|ENST00000437085||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:0:0:0:29,29:0,0:0,0:0,0	77:2:0:0:70,73:5,5:0,0:0,0
12	60625190	.	C	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:0:0:0:0,0:31,31:0,0:0,0	75:0:0:0:7,7:68,68:0,0:0,0
12	60720041	.	G	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:0:0:0:0,0:0,0:31,31:0,0	81:0:0:0:6,6:0,0:75,75:0,0
12	61361040	.	G	T	.	PASS	NT=ref;QSS=24;QSS_NT=24;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:0:0:0:0,0:0,0:33,33:0,0	65:0:0:0:0,0:0,0:54,54:11,11
12	62263063	.	T	C	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||100|FAM19A2|protein_coding|CODING|ENST00000549958|1|1),INTRON(MODIFIER||||109|FAM19A2|protein_coding|CODING|ENST00000552075|2|1),INTRON(MODIFIER||||131|FAM19A2|protein_coding|CODING|ENST00000416284|1|1),INTRON(MODIFIER||||131|FAM19A2|protein_coding|CODING|ENST00000551619|2|1),INTRON(MODIFIER||||49|FAM19A2|protein_coding|CODING|ENST00000551449|1|1),INTRON(MODIFIER||||86|FAM19A2|protein_coding|CODING|ENST00000548780|2|1),INTRON(MODIFIER|||||FAM19A2|nonsense_mediated_decay|CODING|ENST00000549379|4|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:1:0:0:0,0:0,0:0,1:36,36	83:0:0:0:0,0:6,6:0,0:77,77
12	64360285	.	T	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1062|SRGAP1|protein_coding|CODING|ENST00000357825|1|1),INTRON(MODIFIER||||1085|SRGAP1|protein_coding|CODING|ENST00000355086|1|1),INTRON(MODIFIER|||||SRGAP1|retained_intron|CODING|ENST00000537556|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:1:0:0:0,0:0,0:0,0:29,30	55:0:0:0:0,0:5,5:0,0:50,50
12	64886224	.	T	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||TBK1|retained_intron|CODING|ENST00000536906||1),INTRON(MODIFIER||||729|TBK1|protein_coding|CODING|ENST00000331710|13|1),UPSTREAM(MODIFIER|||||TBK1|retained_intron|CODING|ENST00000541805||1),UPSTREAM(MODIFIER|||||TBK1|retained_intron|CODING|ENST00000545392||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:3:0:0:0,0:0,0:0,0:33,36	57:1:0:0:0,0:5,5:0,0:51,52
12	65143307	.	T	C	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||246|GNS|protein_coding|CODING|ENST00000545273|2|1),INTRON(MODIFIER||||343|GNS|protein_coding|CODING|ENST00000545471|3|1),INTRON(MODIFIER||||496|GNS|protein_coding|CODING|ENST00000418919|1|1),INTRON(MODIFIER||||532|GNS|protein_coding|CODING|ENST00000542058|1|1),INTRON(MODIFIER||||552|GNS|protein_coding|CODING|ENST00000258145|2|1),INTRON(MODIFIER||||584|GNS|protein_coding|CODING|ENST00000543646|3|1),UPSTREAM(MODIFIER|||||GNS|retained_intron|CODING|ENST00000541781||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	41:1:0:0:0,0:0,0:0,0:40,42	64:1:0:0:0,0:4,4:0,0:59,60
12	66189023	.	C	A	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->AC;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER|||||RPSAP52|processed_transcript|NON_CODING|ENST00000489520|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:0:0:0:0,0:30,30:0,0:0,0	67:1:0:0:10,10:56,57:0,0:0,0
12	66501849	.	C	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:0:0:0:0,0:29,29:0,0:0,0	71:3:0:0:5,5:63,66:0,0:0,0
12	69325547	rs200810996	G	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||135|CPM|protein_coding|CODING|ENST00000548262|2|1),INTRON(MODIFIER||||248|CPM|protein_coding|CODING|ENST00000548954|2|1),INTRON(MODIFIER||||443|CPM|protein_coding|CODING|ENST00000338356|1|1),INTRON(MODIFIER||||443|CPM|protein_coding|CODING|ENST00000546373|2|1),INTRON(MODIFIER||||443|CPM|protein_coding|CODING|ENST00000551568|2|1),INTRON(MODIFIER||||71|CPM|protein_coding|CODING|ENST00000549781|2|1),INTRON(MODIFIER|||||CPM|nonsense_mediated_decay|CODING|ENST00000547134|2|1),INTRON(MODIFIER|||||CPM|nonsense_mediated_decay|CODING|ENST00000547827|1|1),INTRON(MODIFIER|||||CPM|nonsense_mediated_decay|CODING|ENST00000551728|2|1),INTRON(MODIFIER|||||CPM|retained_intron|CODING|ENST00000547924|2|1);RSPOS=69325547;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000080005000002000100;WGT=1;VC=SNV;INT;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	13:0:11:0:0,0:0,0:13,13:0,0	39:0:18:0:10,10:0,0:29,30:0,0
12	69535887	.	T	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:0:0:0:1,1:0,0:0,0:34,36	48:0:0:0:8,8:0,0:1,1:39,40
12	69871800	.	T	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||11|FRS2|protein_coding|CODING|ENST00000550316|1|1),INTRON(MODIFIER||||30|FRS2|protein_coding|CODING|ENST00000547414|1|1),INTRON(MODIFIER||||32|FRS2|protein_coding|CODING|ENST00000549092|1|1),INTRON(MODIFIER||||35|FRS2|protein_coding|CODING|ENST00000547219|1|1),INTRON(MODIFIER||||39|FRS2|protein_coding|CODING|ENST00000548154|1|1),INTRON(MODIFIER||||508|FRS2|protein_coding|CODING|ENST00000299293|1|1),INTRON(MODIFIER||||508|FRS2|protein_coding|CODING|ENST00000549921|1|1),INTRON(MODIFIER||||508|FRS2|protein_coding|CODING|ENST00000550389|1|1),INTRON(MODIFIER||||90|FRS2|protein_coding|CODING|ENST00000550937|1|1),INTRON(MODIFIER||||9|FRS2|protein_coding|CODING|ENST00000550169|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:0:0:0:0,0:0,0:0,0:29,29	84:0:0:0:0,0:8,8:0,0:76,77
12	70479991	.	A	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=AA->AT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER|||||RP11-611E13.2|processed_transcript|NON_CODING|ENST00000549419|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:5:0:0:32,36:0,0:0,1:0,1	72:3:0:0:59,64:1,1:1,1:8,9
12	73107486	rs201984242	A	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=73107486;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:0:0:0:33,33:1,1:0,0:0,0	73:1:0:0:64,66:0,0:1,1:7,10
12	73332635	.	G	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:2:0:0:0,0:0,0:28,30:0,0	57:0:0:0:7,7:0,0:50,50:0,0
12	73529780	.	A	G	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-314D7.1|lincRNA|NON_CODING|ENST00000551135|1|1),INTRON(MODIFIER|||||RP11-314D7.1|lincRNA|NON_CODING|ENST00000552840|1|1),INTRON(MODIFIER|||||RP11-314D7.1|retained_intron|NON_CODING|ENST00000551934|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:0:0:0:38,39:0,0:0,0:0,0	88:1:0:0:80,81:0,0:7,7:0,0
12	73603324	.	T	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||RP11-314D7.2|lincRNA|NON_CODING|ENST00000550723||1),DOWNSTREAM(MODIFIER|||||RP11-314D7.4|lincRNA|NON_CODING|ENST00000549058||1),INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||RP11-314D7.3|lincRNA|NON_CODING|ENST00000548029||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:2:0:0:0,0:0,0:0,0:31,33	72:0:0:0:0,0:4,4:0,0:68,68
12	75735029	.	A	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||134|CAPS2|protein_coding|CODING|ENST00000436898|1|1),INTRON(MODIFIER||||186|CAPS2|protein_coding|CODING|ENST00000552497|1|1),INTRON(MODIFIER||||204|CAPS2|protein_coding|CODING|ENST00000442339|1|1),INTRON(MODIFIER||||233|GLIPR1L1|protein_coding|CODING|ENST00000312442|1|1),INTRON(MODIFIER||||242|GLIPR1L1|protein_coding|CODING|ENST00000378695|1|1),INTRON(MODIFIER||||32|CAPS2|protein_coding|CODING|ENST00000551829|1|1),INTRON(MODIFIER|||||CAPS2|nonsense_mediated_decay|CODING|ENST00000328705|3|1),INTRON(MODIFIER|||||CAPS2|nonsense_mediated_decay|CODING|ENST00000336815|1|1),INTRON(MODIFIER|||||CAPS2|processed_transcript|CODING|ENST00000486196|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:0:0:0:29,29:0,0:0,0:0,0	60:0:0:0:56,56:0,0:4,4:0,0
12	77576133	.	C	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	27:0:0:0:0,0:27,27:0,0:0,0	63:0:0:0:1,1:56,57:0,0:6,6
12	80701441	.	T	G	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||2332|OTOGL|protein_coding|CODING|ENST00000547103|28|1),INTRON(MODIFIER||||2344|OTOGL|protein_coding|CODING|ENST00000458043|28|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	27:2:0:0:0,0:1,1:0,1:24,32	58:7:0:0:0,1:0,2:10,14:41,46
12	80996332	.	C	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||2295|PTPRQ|protein_coding|CODING|ENST00000266688|31|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	27:0:0:0:0,0:27,27:0,0:0,0	68:0:0:0:0,0:62,62:0,0:6,6
12	83444659	.	C	A	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||591|TMTC2|protein_coding|CODING|ENST00000546590|7|1),INTRON(MODIFIER||||830|TMTC2|protein_coding|CODING|ENST00000549919|10|1),INTRON(MODIFIER||||836|TMTC2|protein_coding|CODING|ENST00000321196|9|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:1:0:0:0,0:35,36:0,0:0,0	71:0:0:0:7,7:64,64:0,0:0,0
12	83552580	.	C	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	27:0:0:0:0,0:27,27:0,0:0,0	76:0:0:0:0,0:69,69:0,0:7,7
12	84277346	.	A	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:0:0:0:29,29:0,0:0,0:0,0	73:1:0:0:67,67:0,1:0,0:5,5
12	87423293	.	G	A	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:0:0:0:0,0:0,0:34,34:0,0	60:1:0:0:7,7:0,0:52,53:0,0
12	87610249	.	G	C	.	PASS	NT=ref;QSS=26;QSS_NT=26;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	44:0:0:0:0,0:0,0:44,45:0,0	66:0:0:0:0,0:10,10:56,56:0,0
12	87718128	.	C	A	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:1:0:0:0,0:33,34:0,0:0,0	76:1:0:0:6,6:69,70:0,0:0,0
12	89288096	.	C	G	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:0:0:0:0,0:36,36:0,0:0,0	53:0:0:0:0,0:49,49:4,4:0,0
12	90911637	.	C	G	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:0:0:0:0,0:32,32:0,0:0,0	89:1:0:0:0,0:82,83:6,6:0,0
12	91414544	.	A	C	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:0:0:0:35,35:0,0:0,0:0,0	85:2:0:0:76,78:7,7:0,0:0,0
12	92536596	.	C	A	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||83|BTG1|protein_coding|CODING|ENST00000552315||1),DOWNSTREAM(MODIFIER|||||RP11-796E2.3|3prime_overlapping_ncrna|NON_CODING|ENST00000549285||1),EXON(MODIFIER|||||RP11-24B21.1|processed_transcript|CODING|ENST00000548552|1|1),UPSTREAM(MODIFIER||||115|RP11-24B21.1|protein_coding|CODING|ENST00000549802||1),UPSTREAM(MODIFIER||||76|RP11-24B21.1|protein_coding|CODING|ENST00000551563||1),UPSTREAM(MODIFIER||||96|RP11-24B21.1|protein_coding|CODING|ENST00000546975||1),UPSTREAM(MODIFIER|||||RP11-24B21.1|processed_transcript|CODING|ENST00000551843||1),UPSTREAM(MODIFIER|||||RP11-24B21.1|processed_transcript|CODING|ENST00000552106||1),UPSTREAM(MODIFIER|||||RP11-796E2.4|antisense|NON_CODING|ENST00000499685||1),UPSTREAM(MODIFIER|||||RP11-796E2.4|antisense|NON_CODING|ENST00000501008||1),UTR_3_PRIME(MODIFIER||||171|BTG1|protein_coding|CODING|ENST00000256015|2|1),UTR_5_PRIME(MODIFIER||||49|RP11-24B21.1|protein_coding|CODING|ENST00000553207|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:0:0:0:0,0:36,36:0,0:0,0	74:0:0:0:7,7:67,68:0,0:0,0
12	93335703	.	T	C	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:2:0:0:0,0:0,0:0,0:36,38	74:1:0:0:0,0:4,4:0,0:69,70
12	95332339	rs861338	T	C	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRAGENIC(MODIFIER|||||NDUFA12||CODING|||1);RSPOS=95332339;RV;dbSNPBuildID=86;SSR=0;SAO=0;VP=050100000001000002000100;WGT=1;VC=SNV;SLO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:0:0:0:0,0:0,0:0,0:34,34	57:3:0:0:0,1:6,6:0,0:48,51
12	96048426	.	A	T	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||591|NTN4|protein_coding|CODING|ENST00000344911||1),DOWNSTREAM(MODIFIER||||591|NTN4|protein_coding|CODING|ENST00000538383||1),DOWNSTREAM(MODIFIER||||605|NTN4|protein_coding|CODING|ENST00000553059||1),DOWNSTREAM(MODIFIER||||628|NTN4|protein_coding|CODING|ENST00000343702||1),INTRON(MODIFIER|||||PGAM1P5|processed_transcript|NON_CODING|ENST00000552554|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:0:0:0:39,39:0,0:1,1:0,0	82:0:0:0:71,74:0,0:2,2:9,9
12	96552118	.	G	A	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	41:1:0:0:0,0:0,0:39,56:1,2	61:0:0:0:4,5:0,0:57,68:0,0
12	96742328	.	G	A	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||160|CDK17|protein_coding|CODING|ENST00000552496|1|1),INTRON(MODIFIER||||178|CDK17|protein_coding|CODING|ENST00000551816|1|1),INTRON(MODIFIER||||470|CDK17|protein_coding|CODING|ENST00000542666|1|1),INTRON(MODIFIER||||523|CDK17|protein_coding|CODING|ENST00000261211|1|1),INTRON(MODIFIER||||523|CDK17|protein_coding|CODING|ENST00000543119|1|1),INTRON(MODIFIER||||87|CDK17|protein_coding|CODING|ENST00000552262|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	42:1:0:0:0,0:0,0:41,42:0,0	76:2:0:0:7,8:0,0:67,68:0,0
12	97505280	.	T	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER|||||RP11-541G9.1|processed_transcript|NON_CODING|ENST00000552238|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:0:0:0:0,0:0,0:0,0:39,39	88:0:0:0:0,0:4,4:0,0:84,85
12	97510688	.	G	A	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-541G9.1|processed_transcript|NON_CODING|ENST00000552238|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:0:0:0:0,0:0,0:39,39:0,0	60:1:0:0:5,5:0,0:54,56:0,0
12	98430756	.	C	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:1:0:0:0,0:34,35:0,0:0,0	86:2:0:0:4,4:80,82:0,0:0,0
12	100328136	.	T	A	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1248|ANKS1B|protein_coding|CODING|ENST00000329257|1|1),INTRON(MODIFIER||||1248|ANKS1B|protein_coding|CODING|ENST00000547776|1|1),INTRON(MODIFIER||||561|ANKS1B|protein_coding|CODING|ENST00000549866|1|1),INTRON(MODIFIER||||764|ANKS1B|protein_coding|CODING|ENST00000547010|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:2:0:0:0,0:0,0:0,0:37,39	86:1:0:0:8,9:0,0:0,0:77,77
12	100391395	rs148345733	G	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=100391395;GMAF=0.0073;dbSNPBuildID=134;SSR=0;SAO=0;VP=050000000005000014000100;WGT=1;VC=SNV;ASP;KGPhase1;KGPROD	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:0:0:0:0,0:0,0:30,30:0,0	77:0:0:0:0,0:0,0:72,72:5,5
12	101561359	.	C	T	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||610|SLC5A8|protein_coding|CODING|ENST00000536262|11|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	41:0:0:0:0,0:41,41:0,0:0,0	77:0:0:0:0,0:72,72:0,0:5,5
12	103855800	.	C	A	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||107|C12orf42|protein_coding|CODING|ENST00000315192|2|1),INTRON(MODIFIER||||206|C12orf42|protein_coding|CODING|ENST00000552578|2|1),INTRON(MODIFIER||||293|C12orf42|protein_coding|CODING|ENST00000548048|3|1),INTRON(MODIFIER||||360|C12orf42|protein_coding|CODING|ENST00000378113|2|1),INTRON(MODIFIER||||360|C12orf42|protein_coding|CODING|ENST00000548883|2|1),INTRON(MODIFIER|||||C12orf42|nonsense_mediated_decay|CODING|ENST00000547347|2|1),INTRON(MODIFIER|||||C12orf42|nonsense_mediated_decay|CODING|ENST00000551134|2|1),INTRON(MODIFIER|||||C12orf42|processed_transcript|CODING|ENST00000546526|2|1),INTRON(MODIFIER|||||C12orf42|processed_transcript|CODING|ENST00000548789|3|1),INTRON(MODIFIER|||||C12orf42|processed_transcript|CODING|ENST00000550497|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:1:0:0:0,0:34,36:0,0:0,0	85:6:0:0:6,6:73,82:0,0:0,0
12	104882871	.	A	G	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||347|CHST11|protein_coding|CODING|ENST00000549260|1|1),INTRON(MODIFIER||||352|CHST11|protein_coding|CODING|ENST00000303694|1|1),INTRON(MODIFIER||||72|CHST11|protein_coding|CODING|ENST00000546689|1|1),INTRON(MODIFIER||||77|CHST11|protein_coding|CODING|ENST00000547956|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:2:0:0:37,39:0,0:0,0:0,0	89:3:0:0:81,84:0,0:5,7:0,0
12	104882877	.	T	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||347|CHST11|protein_coding|CODING|ENST00000549260|1|1),INTRON(MODIFIER||||352|CHST11|protein_coding|CODING|ENST00000303694|1|1),INTRON(MODIFIER||||72|CHST11|protein_coding|CODING|ENST00000546689|1|1),INTRON(MODIFIER||||77|CHST11|protein_coding|CODING|ENST00000547956|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:2:0:0:0,0:0,0:0,1:36,37	90:3:0:0:0,0:4,5:1,1:82,86
12	108023387	.	A	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=AA->AC;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER||||1007|BTBD11|protein_coding|CODING|ENST00000490090|11|1),INTRON(MODIFIER||||1104|BTBD11|protein_coding|CODING|ENST00000280758|11|1),INTRON(MODIFIER||||641|BTBD11|protein_coding|CODING|ENST00000357167|9|1),INTRON(MODIFIER||||985|BTBD11|protein_coding|CODING|ENST00000420571|9|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	26:0:0:0:25,25:0,0:1,1:0,0	64:1:0:0:49,50:13,13:1,1:0,0
12	109017374	rs201674915	T	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|gAa/gCa|E227A|402|SELPLG|protein_coding|CODING|ENST00000388962|3|1),NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|gAa/gCa|E237A|412|SELPLG|protein_coding|CODING|ENST00000550948|2|1),NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|gAa/gCa|E253A|428|SELPLG|protein_coding|CODING|ENST00000228463|2|1);RSPOS=109017374;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000000a05000002000100;WGT=1;VC=SNV;NSM;REF;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:0:0:0:0,0:2,2:1,1:35,35	68:4:0:0:0,0:0,0:12,15:52,53
12	109300922	rs7311286	T	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||RP11-423G4.7|lincRNA|NON_CODING|ENST00000569754||1),INTERGENIC(MODIFIER||||||||||1);RSPOS=109300922;dbSNPBuildID=116;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:1:0:0:0,0:0,0:0,0:30,33	67:2:0:0:0,0:8,10:0,0:57,59
12	110591142	.	C	T	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||365|IFT81|protein_coding|CODING|ENST00000546374|9|1),INTRON(MODIFIER||||431|IFT81|protein_coding|CODING|ENST00000361948|10|1),INTRON(MODIFIER||||676|IFT81|protein_coding|CODING|ENST00000242591|10|1),INTRON(MODIFIER||||676|IFT81|protein_coding|CODING|ENST00000552912|10|1),INTRON(MODIFIER|||||IFT81|processed_transcript|CODING|ENST00000549009|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:1:0:0:0,0:39,40:0,0:0,0	72:0:1:0:0,0:67,69:0,0:5,5
12	110639081	.	T	G	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||676|IFT81|protein_coding|CODING|ENST00000242591|14|1),INTRON(MODIFIER||||676|IFT81|protein_coding|CODING|ENST00000552912|14|1),UPSTREAM(MODIFIER||||107|IFT81|protein_coding|CODING|ENST00000550748||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:0:0:0:0,0:0,0:0,0:33,34	65:1:0:0:0,0:0,0:5,6:59,59
12	110853875	.	T	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||158|RP11-478C19.2|protein_coding|CODING|ENST00000550231|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	28:1:0:0:0,0:0,0:0,0:27,28	53:0:0:0:7,7:0,0:0,0:46,47
12	111655448	.	A	G	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1486|CUX2|protein_coding|CODING|ENST00000261726|2|1),INTRON(MODIFIER||||246|CUX2|protein_coding|CODING|ENST00000397643|3|1),UPSTREAM(MODIFIER|||||CUX2|processed_transcript|CODING|ENST00000551604||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:0:0:0:35,35:0,0:0,0:0,0	72:1:0:0:65,66:0,0:6,6:0,0
12	112048988	.	C	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:0:0:0:0,0:29,30:0,0:0,0	86:0:0:0:0,0:81,81:0,0:5,6
12	112275020	.	C	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||AC003029.1|pseudogene|NON_CODING|ENST00000507132||1),DOWNSTREAM(MODIFIER|||||MAPKAPK5-AS1|lincRNA|NON_CODING|ENST00000428207||1),DOWNSTREAM(MODIFIER|||||MAPKAPK5-AS1|lincRNA|NON_CODING|ENST00000442119||1),DOWNSTREAM(MODIFIER|||||MAPKAPK5-AS1|lincRNA|NON_CODING|ENST00000443596||1),DOWNSTREAM(MODIFIER|||||MAPKAPK5-AS1|lincRNA|NON_CODING|ENST00000456429||1),DOWNSTREAM(MODIFIER|||||MAPKAPK5-AS1|lincRNA|NON_CODING|ENST00000590479||1),INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER||||471|MAPKAPK5|protein_coding|CODING|ENST00000550735||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	41:0:0:0:0,0:41,41:0,0:0,0	73:0:0:0:0,0:67,68:0,0:6,7
12	112538027	.	A	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||972|NAA25|protein_coding|CODING|ENST00000261745|1|1),INTRON(MODIFIER|||||NAA25|nonsense_mediated_decay|CODING|ENST00000549711|1|1),INTRON(MODIFIER|||||NAA25|nonsense_mediated_decay|CODING|ENST00000551858|1|1),INTRON(MODIFIER|||||NAA25|retained_intron|CODING|ENST00000548627|1|1),INTRON(MODIFIER|||||NAA25|retained_intron|CODING|ENST00000552527|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:0:0:0:30,30:0,0:0,0:0,0	80:1:0:0:73,74:1,1:0,0:5,5
12	112538034	.	C	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||972|NAA25|protein_coding|CODING|ENST00000261745|1|1),INTRON(MODIFIER|||||NAA25|nonsense_mediated_decay|CODING|ENST00000549711|1|1),INTRON(MODIFIER|||||NAA25|nonsense_mediated_decay|CODING|ENST00000551858|1|1),INTRON(MODIFIER|||||NAA25|retained_intron|CODING|ENST00000548627|1|1),INTRON(MODIFIER|||||NAA25|retained_intron|CODING|ENST00000552527|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	28:0:0:0:0,0:28,28:0,0:0,0	80:1:0:0:0,0:74,75:0,0:5,5
12	112538040	.	A	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||972|NAA25|protein_coding|CODING|ENST00000261745|1|1),INTRON(MODIFIER|||||NAA25|nonsense_mediated_decay|CODING|ENST00000549711|1|1),INTRON(MODIFIER|||||NAA25|nonsense_mediated_decay|CODING|ENST00000551858|1|1),INTRON(MODIFIER|||||NAA25|retained_intron|CODING|ENST00000548627|1|1),INTRON(MODIFIER|||||NAA25|retained_intron|CODING|ENST00000552527|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	28:0:0:0:28,28:0,0:0,0:0,0	78:1:0:0:68,69:0,0:8,8:1,1
12	113897671	.	A	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||402|LHX5|protein_coding|CODING|ENST00000261731||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:0:0:0:28,28:2,2:0,0:0,0	72:3:0:0:48,50:17,18:1,1:3,3
12	114700842	.	G	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	28:1:0:0:0,0:0,0:27,28:0,0	81:1:0:0:0,0:0,0:73,73:7,8
12	115121452	.	C	T	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=UPSTREAM(MODIFIER||||743|TBX3|protein_coding|CODING|ENST00000257566||1),UPSTREAM(MODIFIER|||||TBX3|retained_intron|CODING|ENST00000548503||1),UPSTREAM(MODIFIER|||||TBX3|retained_intron|CODING|ENST00000552054||1),UTR_5_PRIME(MODIFIER||||723|TBX3|protein_coding|CODING|ENST00000349155|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:1:0:0:0,0:39,40:0,0:0,0	65:0:0:0:0,0:60,60:0,0:5,5
12	115143119	.	A	G	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	17:1:0:0:16,17:0,0:0,0:0,0	64:0:0:0:50,51:0,0:13,15:1,1
12	115588982	.	G	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	25:2:0:0:0,0:0,1:23,26:0,0	62:1:0:0:9,9:0,0:52,54:0,0
12	116348800	.	G	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:2:0:0:0,0:0,0:30,32:0,0	71:1:0:0:6,7:0,0:64,64:0,0
12	116727884	.	A	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:2:0:0:27,30:0,0:0,0:0,0	93:2:0:0:81,83:0,0:10,10:0,0
12	117464030	rs111265268	C	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||532|FBXW8|protein_coding|CODING|ENST00000455858|9|1),INTRON(MODIFIER||||532|FBXW8|protein_coding|CODING|ENST00000505227|9|1),INTRON(MODIFIER||||598|FBXW8|protein_coding|CODING|ENST00000309909|9|1);RSPOS=117464030;dbSNPBuildID=132;SSR=0;SAO=0;VP=050000080001000102000100;GENEINFO=FBXW8:26259;WGT=1;VC=SNV;INT;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	28:1:0:0:0,0:27,30:0,0:0,0	83:3:0:0:1,1:73,80:0,0:6,6
12	118169289	rs182034779	A	G	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||921|KSR2|protein_coding|CODING|ENST00000425217|4|1),INTRON(MODIFIER||||950|KSR2|protein_coding|CODING|ENST00000339824|4|1);RSPOS=118169289;dbSNPBuildID=135;SSR=0;SAO=0;VP=050000080005000002000100;GENEINFO=KSR2:283455;WGT=1;VC=SNV;INT;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	50:0:0:0:49,51:0,0:1,1:0,0	97:5:0:0:80,80:0,1:12,16:0,0
12	118205199	.	T	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||921|KSR2|protein_coding|CODING|ENST00000425217|3|1),INTRON(MODIFIER||||950|KSR2|protein_coding|CODING|ENST00000339824|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	22:1:0:0:0,0:0,0:0,0:21,22	51:3:0:0:7,7:0,0:1,2:40,43
12	118996716	.	G	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->GT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	26:0:0:0:0,0:0,0:26,26:0,0	66:2:0:0:0,0:0,0:56,58:8,8
12	120601077	.	C	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||GCN1L1|retained_intron|CODING|ENST00000551549||1),INTRON(MODIFIER||||2671|GCN1L1|protein_coding|CODING|ENST00000300648|18|1),UPSTREAM(MODIFIER|||||GCN1L1|retained_intron|CODING|ENST00000547369||1),UPSTREAM(MODIFIER|||||GCN1L1|retained_intron|CODING|ENST00000550471||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:1:0:0:0,1:28,28:0,0:0,0	79:1:0:0:0,0:68,69:10,10:0,0
12	120757988	.	G	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||119|PLA2G1B|protein_coding|CODING|ENST00000549767||1),DOWNSTREAM(MODIFIER||||148|PLA2G1B|protein_coding|CODING|ENST00000308366||1),DOWNSTREAM(MODIFIER||||70|PLA2G1B|protein_coding|CODING|ENST00000423423||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:4:0:0:0,0:2,2:34,38:0,1	78:3:0:0:5,6:0,0:70,72:0,0
12	121349381	.	G	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||CLIC1P1|processed_pseudogene|NON_CODING|ENST00000431907||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:2:0:0:0,0:0,0:29,31:0,0	71:1:0:0:5,5:0,0:65,66:0,0
12	122009658	.	A	T	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||KDM2B|retained_intron|CODING|ENST00000540191||1),INTRON(MODIFIER||||1265|KDM2B|protein_coding|CODING|ENST00000377069|4|1),INTRON(MODIFIER||||1336|KDM2B|protein_coding|CODING|ENST00000377071|4|1),INTRON(MODIFIER||||179|KDM2B|protein_coding|CODING|ENST00000539394|3|1),INTRON(MODIFIER||||241|KDM2B|protein_coding|CODING|ENST00000539371|3|1),INTRON(MODIFIER||||509|KDM2B|protein_coding|CODING|ENST00000446152|4|1),INTRON(MODIFIER||||559|KDM2B|protein_coding|CODING|ENST00000536437|3|1),INTRON(MODIFIER|||||KDM2B|nonsense_mediated_decay|CODING|ENST00000543025|3|1),INTRON(MODIFIER|||||KDM2B|retained_intron|CODING|ENST00000457249|2|1),INTRON(MODIFIER|||||KDM2B|retained_intron|CODING|ENST00000538046|4|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	46:2:0:0:42,45:2,3:0,0:0,0	79:2:0:0:70,73:1,1:0,1:6,7
12	122142087	.	A	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:0:0:0:32,32:0,0:0,0:0,0	68:1:0:0:63,64:0,0:4,4:0,0
12	122295861	.	G	A	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||RP11-7M8.2|antisense|NON_CODING|ENST00000543848||1),INTRON(MODIFIER||||354|HPD|protein_coding|CODING|ENST00000543163|3|1),INTRON(MODIFIER||||393|HPD|protein_coding|CODING|ENST00000289004|2|1),INTRON(MODIFIER|||||HPD|retained_intron|CODING|ENST00000535114|2|1),UPSTREAM(MODIFIER|||||HPD|retained_intron|CODING|ENST00000542159||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:1:0:0:0,0:0,0:36,37:0,0	66:2:0:0:6,6:0,0:58,60:0,0
12	122335653	.	C	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||RP11-87C12.4|antisense|NON_CODING|ENST00000536910||1),INTRON(MODIFIER||||118|RP11-87C12.2|protein_coding|CODING|ENST00000542602|1|1),INTRON(MODIFIER||||152|PSMD9|protein_coding|CODING|ENST00000538613|2|1),INTRON(MODIFIER||||207|PSMD9|protein_coding|CODING|ENST00000340175|2|1),INTRON(MODIFIER||||222|PSMD9|protein_coding|CODING|ENST00000261817|2|1),INTRON(MODIFIER||||223|PSMD9|protein_coding|CODING|ENST00000541212|2|1),INTRON(MODIFIER|||||PSMD9|nonsense_mediated_decay|CODING|ENST00000535293|1|1),INTRON(MODIFIER|||||PSMD9|nonsense_mediated_decay|CODING|ENST00000537407|2|1),INTRON(MODIFIER|||||PSMD9|nonsense_mediated_decay|CODING|ENST00000540962|2|1),INTRON(MODIFIER|||||PSMD9|nonsense_mediated_decay|CODING|ENST00000543699|2|1),INTRON(MODIFIER|||||RP11-87C12.2|processed_transcript|CODING|ENST00000546333|2|1),START_GAINED(LOW||||134|PSMD9|protein_coding|CODING|ENST00000544724|1|1),UPSTREAM(MODIFIER|||||PSMD9|retained_intron|CODING|ENST00000544254||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	28:1:0:0:0,0:27,28:0,0:0,0	85:1:0:0:1,1:75,75:0,0:8,8
12	122703227	.	A	G	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||124|DIABLO|protein_coding|CODING|ENST00000541656|2|1),INTRON(MODIFIER||||127|DIABLO|protein_coding|CODING|ENST00000540535|2|1),INTRON(MODIFIER||||132|DIABLO|protein_coding|CODING|ENST00000541273|2|1),INTRON(MODIFIER||||186|DIABLO|protein_coding|CODING|ENST00000267169|2|1),INTRON(MODIFIER||||186|DIABLO|protein_coding|CODING|ENST00000464942|1|1),INTRON(MODIFIER||||195|DIABLO|protein_coding|CODING|ENST00000353548|2|1),INTRON(MODIFIER||||195|DIABLO|protein_coding|CODING|ENST00000413918|3|1),INTRON(MODIFIER||||239|DIABLO|protein_coding|CODING|ENST00000443649|3|1),INTRON(MODIFIER||||76|DIABLO|protein_coding|CODING|ENST00000485724|3|1),INTRON(MODIFIER|||||DIABLO|nonsense_mediated_decay|CODING|ENST00000342392|2|1),INTRON(MODIFIER|||||RP11-512M8.5|nonsense_mediated_decay|NON_CODING|ENST00000535844|12|1),SPLICE_SITE_DONOR(HIGH||||76|DIABLO|protein_coding|CODING|ENST00000485724|3|1),UPSTREAM(MODIFIER|||||DIABLO|retained_intron|CODING|ENST00000489781||1),UTR_5_PRIME(MODIFIER||||155|DIABLO|protein_coding|CODING|ENST00000474004|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:0:0:0:33,33:0,0:0,0:0,0	80:3:0:0:72,74:0,1:5,5:0,0
12	122893881	.	T	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1392|CLIP1|protein_coding|CODING|ENST00000537178|1|1),INTRON(MODIFIER||||1427|CLIP1|protein_coding|CODING|ENST00000358808|1|1),INTRON(MODIFIER||||82|CLIP1|protein_coding|CODING|ENST00000539080|1|1),INTRON(MODIFIER|||||CLIP1|nonsense_mediated_decay|CODING|ENST00000361654|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:0:0:0:0,0:0,0:0,0:31,32	65:3:0:0:0,0:5,6:0,0:57,63
12	122979140	.	C	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||184|ZCCHC8|protein_coding|CODING|ENST00000536663|1|1),INTRON(MODIFIER||||37|ZCCHC8|protein_coding|CODING|ENST00000540586|1|1),INTRON(MODIFIER||||469|ZCCHC8|protein_coding|CODING|ENST00000536306|1|1),INTRON(MODIFIER||||469|ZCCHC8|protein_coding|CODING|ENST00000543897|1|1),INTRON(MODIFIER||||707|ZCCHC8|protein_coding|CODING|ENST00000336229|2|1),UPSTREAM(MODIFIER|||||SNORA9|snoRNA|NON_CODING|ENST00000516383||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:0:0:0:0,0:30,31:1,1:0,0	75:4:0:0:0,0:66,69:0,0:5,6
12	123392940	.	C	T	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:1:0:0:0,0:35,36:0,0:0,0	46:2:0:0:0,0:39,42:0,0:5,5
12	123476895	.	A	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1070|PITPNM2|protein_coding|CODING|ENST00000392428|13|1),INTRON(MODIFIER||||1343|PITPNM2|protein_coding|CODING|ENST00000280562|15|1),INTRON(MODIFIER||||1349|PITPNM2|protein_coding|CODING|ENST00000320201|15|1),INTRON(MODIFIER||||1349|PITPNM2|protein_coding|CODING|ENST00000542749|14|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:1:0:0:36,38:0,0:0,0:0,0	58:2:0:0:48,48:6,7:2,3:0,0
12	123667833	.	A	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1028|MPHOSPH9|protein_coding|CODING|ENST00000302349|9|1),INTRON(MODIFIER||||1031|MPHOSPH9|protein_coding|CODING|ENST00000541076|9|1),INTRON(MODIFIER|||||MPHOSPH9|nonsense_mediated_decay|CODING|ENST00000302373|8|1),INTRON(MODIFIER|||||MPHOSPH9|nonsense_mediated_decay|CODING|ENST00000392425|8|1),INTRON(MODIFIER|||||MPHOSPH9|nonsense_mediated_decay|CODING|ENST00000545556|13|1),UPSTREAM(MODIFIER|||||MPHOSPH9|retained_intron|CODING|ENST00000541823||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:1:0:0:30,31:0,0:0,0:0,0	68:1:0:0:60,63:0,0:7,7:0,0
12	123846460	.	G	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||RP13-942N8.1|lincRNA|NON_CODING|ENST00000543072||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:0:0:0:0,0:0,0:31,31:0,0	67:0:0:0:6,7:0,0:61,62:0,0
12	124312780	.	T	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||4471|DNAH10|protein_coding|CODING|ENST00000409039|24|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:2:0:0:0,0:0,0:0,1:27,28	75:0:0:0:0,0:6,6:1,1:68,68
12	124719669	.	C	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-522N14.1|processed_transcript|NON_CODING|ENST00000540762|3|1),INTRON(MODIFIER|||||RP11-522N14.1|processed_transcript|NON_CODING|ENST00000545615|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	28:1:0:0:0,1:27,52:0,0:0,0	62:5:0:0:0,0:51,106:0,0:6,6
12	124923976	.	G	C	.	PASS	NT=ref;QSS=31;QSS_NT=31;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1450|NCOR2|protein_coding|CODING|ENST00000458234|9|1),INTRON(MODIFIER||||2075|NCOR2|protein_coding|CODING|ENST00000404121|8|1),INTRON(MODIFIER||||244|NCOR2|protein_coding|CODING|ENST00000448008|4|1),INTRON(MODIFIER||||2458|NCOR2|protein_coding|CODING|ENST00000404621|8|1),INTRON(MODIFIER||||2459|NCOR2|protein_coding|CODING|ENST00000397355|8|1),INTRON(MODIFIER||||2504|NCOR2|protein_coding|CODING|ENST00000429285|8|1),INTRON(MODIFIER||||2514|NCOR2|protein_coding|CODING|ENST00000405201|7|1),INTRON(MODIFIER||||2521|NCOR2|protein_coding|CODING|ENST00000356219|8|1),INTRON(MODIFIER||||492|NCOR2|protein_coding|CODING|ENST00000420698|8|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	78:14:0:0:0,0:0,3:64,111:0,0	133:24:0:0:0,2:8,18:101,180:0,0
12	125172897	.	A	C	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:2:0:0:32,32:0,1:0,0:0,1	51:2:0:0:37,37:12,14:0,0:0,0
12	125599463	.	A	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER||||119|AACS|protein_coding|CODING|ENST00000539251|1|1),INTRON(MODIFIER||||258|AACS|protein_coding|CODING|ENST00000441247|4|1),INTRON(MODIFIER||||270|AACS|protein_coding|CODING|ENST00000316543|3|1),INTRON(MODIFIER||||599|AACS|protein_coding|CODING|ENST00000261686|9|1),INTRON(MODIFIER||||672|AACS|protein_coding|CODING|ENST00000316519|9|1),UPSTREAM(MODIFIER||||184|AACS|protein_coding|CODING|ENST00000545511||1),UPSTREAM(MODIFIER||||223|AACS|protein_coding|CODING|ENST00000538851||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	41:3:0:0:37,38:1,2:0,1:0,0	83:4:0:0:70,70:3,4:6,9:0,0
12	125734469	.	A	T	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||TMEM132B|processed_transcript|CODING|ENST00000418253|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	41:0:0:0:41,41:0,0:0,0:0,0	91:0:0:0:84,84:1,1:0,0:6,6
12	125910781	.	T	G	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1078|TMEM132B|protein_coding|CODING|ENST00000299308|3|1),INTRON(MODIFIER|||||TMEM132B|retained_intron|CODING|ENST00000534945|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:0:0:0:0,0:0,0:0,0:36,36	70:0:0:0:0,0:0,0:7,7:63,63
12	125955638	.	C	T	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1078|TMEM132B|protein_coding|CODING|ENST00000299308|3|1),INTRON(MODIFIER|||||TMEM132B|retained_intron|CODING|ENST00000534945|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:0:0:0:0,0:40,40:0,0:0,0	67:0:0:0:0,0:62,62:0,0:5,5
12	126164704	.	T	C	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:1:0:0:0,0:0,0:0,0:39,40	77:3:0:0:0,0:7,7:0,0:67,70
12	126295731	.	A	G	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:0:0:0:32,32:0,0:0,0:0,0	73:0:0:0:67,67:1,1:5,5:0,0
12	126504187	.	A	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:0:0:0:32,32:0,0:0,0:0,0	70:1:0:0:63,64:6,6:0,0:0,0
12	126542064	.	C	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:0:0:0:0,0:29,29:0,0:0,0	58:1:0:0:0,0:50,50:0,0:7,7
12	126946473	.	C	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->AC;SOMATIC;TQSS=2;TQSS_NT=2;EFF=DOWNSTREAM(MODIFIER|||||RP5-944M2.3|processed_transcript|NON_CODING|ENST00000544759||1),INTRON(MODIFIER|||||RP5-944M2.3|lincRNA|NON_CODING|ENST00000397346|5|1),INTRON(MODIFIER|||||RP5-944M2.3|lincRNA|NON_CODING|ENST00000539969|6|1),INTRON(MODIFIER|||||RP5-944M2.3|lincRNA|NON_CODING|ENST00000545767|5|1),INTRON(MODIFIER|||||RP5-944M2.3|processed_transcript|NON_CODING|ENST00000540774|4|1),UPSTREAM(MODIFIER|||||RP5-944M2.4|processed_pseudogene|NON_CODING|ENST00000536421||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:0:0:0:0,0:30,30:0,0:0,0	76:1:0:0:7,7:68,69:0,0:0,0
12	127726787	.	A	G	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:0:0:0:37,37:0,0:0,0:0,0	69:0:0:0:65,65:0,0:4,4:0,0
12	127981100	.	T	A	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:1:0:0:0,0:0,0:2,2:35,36	74:1:0:0:7,7:0,0:0,0:66,67
12	128493628	.	C	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	27:0:0:0:0,0:27,27:0,0:0,0	86:1:0:0:0,0:77,78:0,0:8,8
12	128861267	.	C	G	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1108|TMEM132C|protein_coding|CODING|ENST00000435159|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:0:0:0:0,0:39,39:0,0:0,0	71:0:0:0:0,0:66,66:5,5:0,0
12	129193409	rs55990294	T	C	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||1108|TMEM132C|protein_coding|CODING|ENST00000435159||1),DOWNSTREAM(MODIFIER||||493|TMEM132C|protein_coding|CODING|ENST00000537538||1),DOWNSTREAM(MODIFIER||||724|TMEM132C|protein_coding|CODING|ENST00000315208||1),INTERGENIC(MODIFIER||||||||||1);RSPOS=129193409;dbSNPBuildID=129;SSR=16;SAO=0;VP=050100000005000102000100;WGT=1;VC=SNV;SLO;ASP;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:0:0:0:0,0:0,0:1,1:34,34	78:0:0:0:1,1:7,8:0,0:70,70
12	129331485	.	G	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:2:0:0:0,0:0,0:28,34:0,0	80:2:0:0:6,6:0,0:71,74:1,1
12	129613823	.	A	G	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1099|TMEM132D|protein_coding|CODING|ENST00000422113|5|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:3:0:0:35,37:0,0:0,0:0,1	85:4:0:0:74,79:0,0:7,8:0,0
12	129744754	.	G	A	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1099|TMEM132D|protein_coding|CODING|ENST00000422113|4|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:0:0:0:0,0:0,0:34,34:0,0	73:0:0:0:4,4:0,0:69,69:0,0
12	130876929	rs12824961	G	A	.	PASS	NT=ref;QSS=29;QSS_NT=29;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||1052|RIMBP2|protein_coding|CODING|ENST00000261655||1),INTERGENIC(MODIFIER||||||||||1);RSPOS=130876929;dbSNPBuildID=121;SSR=0;SAO=0;VP=050000000001000103000100;WGT=1;VC=SNV;GNO;OTHERKG;PH3	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	67:9:0:0:0,1:0,0:58,119:0,0	134:23:0:0:8,15:1,2:102,247:0,0
12	130968227	.	C	T	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1052|RIMBP2|protein_coding|CODING|ENST00000261655|2|1),INTRON(MODIFIER||||645|RIMBP2|protein_coding|CODING|ENST00000535703|2|1),INTRON(MODIFIER||||645|RIMBP2|protein_coding|CODING|ENST00000536002|4|1),INTRON(MODIFIER|||||RIMBP2|retained_intron|CODING|ENST00000544568|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	44:4:0:0:0,0:40,48:0,0:0,0	77:10:0:0:0,0:63,77:0,1:4,4
12	130968230	.	A	G	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=AA->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER||||1052|RIMBP2|protein_coding|CODING|ENST00000261655|2|1),INTRON(MODIFIER||||645|RIMBP2|protein_coding|CODING|ENST00000535703|2|1),INTRON(MODIFIER||||645|RIMBP2|protein_coding|CODING|ENST00000536002|4|1),INTRON(MODIFIER|||||RIMBP2|retained_intron|CODING|ENST00000544568|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	44:4:0:0:40,46:0,2:0,1:0,0	77:10:0:0:54,62:6,12:7,8:0,0
12	131612046	.	A	G	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||393|GPR133|protein_coding|CODING|ENST00000543617|7|1),INTRON(MODIFIER||||560|GPR133|protein_coding|CODING|ENST00000376682|12|1),INTRON(MODIFIER||||874|GPR133|protein_coding|CODING|ENST00000261654|20|1),INTRON(MODIFIER||||906|GPR133|protein_coding|CODING|ENST00000535015|21|1),INTRON(MODIFIER|||||GPR133|processed_transcript|CODING|ENST00000540207|1|1),INTRON(MODIFIER|||||GPR133|retained_intron|CODING|ENST00000446583|8|1),INTRON(MODIFIER|||||GPR133|retained_intron|CODING|ENST00000537489|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	41:2:0:0:38,40:1,1:0,0:0,0	66:2:0:0:54,59:1,1:9,10:0,0
12	131880303	.	G	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	57:17:15:0:0,2:0,1:40,97:0,0	118:31:22:0:7,14:0,1:80,228:0,0
12	132162343	.	G	C	.	PASS	NT=ref;QSS=23;QSS_NT=23;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	47:2:0:0:0,0:0,0:45,47:0,0	61:1:0:0:0,0:4,4:56,58:0,0
12	133050780	.	T	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:2:0:0:0,0:0,0:0,1:33,38	85:6:0:0:0,0:6,7:1,3:72,94
12	133265867	.	A	G	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||120|RP13-672B3.2|protein_coding|CODING|ENST00000537262|1|1),INTRON(MODIFIER||||160|PXMP2|protein_coding|CODING|ENST00000543589|1|1),INTRON(MODIFIER||||167|PXMP2|protein_coding|CODING|ENST00000545677|1|1),INTRON(MODIFIER||||195|PXMP2|protein_coding|CODING|ENST00000317479|1|1),INTRON(MODIFIER||||2297|POLE|protein_coding|CODING|ENST00000455752|1|1),UPSTREAM(MODIFIER||||110|PXMP2|protein_coding|CODING|ENST00000539093||1),UPSTREAM(MODIFIER||||191|PXMP2|protein_coding|CODING|ENST00000428960||1),UPSTREAM(MODIFIER||||2259|POLE|protein_coding|CODING|ENST00000535270||1),UPSTREAM(MODIFIER||||2286|POLE|protein_coding|CODING|ENST00000320574||1),UPSTREAM(MODIFIER|||||POLE|nonsense_mediated_decay|CODING|ENST00000537064||1),UPSTREAM(MODIFIER|||||POLE|retained_intron|CODING|ENST00000539357||1),UPSTREAM(MODIFIER|||||RP13-672B3.2|nonsense_mediated_decay|CODING|ENST00000540119||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:2:0:0:34,39:1,2:0,0:0,0	78:1:0:0:70,72:1,1:6,6:0,0
12	133310253	.	G	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||128|ANKLE2|protein_coding|CODING|ENST00000535036||1),DOWNSTREAM(MODIFIER||||250|ANKLE2|protein_coding|CODING|ENST00000545623||1),DOWNSTREAM(MODIFIER||||648|ANKLE2|protein_coding|CODING|ENST00000337516||1),DOWNSTREAM(MODIFIER|||||ANKLE2|retained_intron|CODING|ENST00000538591||1),INTRON(MODIFIER||||2297|POLE|protein_coding|CODING|ENST00000455752|1|1),INTRON(MODIFIER||||257|ANKLE2|protein_coding|CODING|ENST00000538766|1|1),INTRON(MODIFIER||||876|ANKLE2|protein_coding|CODING|ENST00000539605|9|1),INTRON(MODIFIER||||938|ANKLE2|protein_coding|CODING|ENST00000357997|10|1),INTRON(MODIFIER|||||ANKLE2|processed_transcript|CODING|ENST00000542374|2|1),INTRON(MODIFIER|||||ANKLE2|retained_intron|CODING|ENST00000439231|5|1),INTRON(MODIFIER|||||ANKLE2|retained_intron|CODING|ENST00000505031|3|1),UPSTREAM(MODIFIER||||293|ANKLE2|protein_coding|CODING|ENST00000542282||1),UPSTREAM(MODIFIER||||293|ANKLE2|protein_coding|CODING|ENST00000542657||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:0:0:0:0,0:0,0:30,33:0,0	68:5:0:0:0,0:0,0:59,63:4,6
12	133327978	.	C	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||2297|POLE|protein_coding|CODING|ENST00000455752|1|1),INTRON(MODIFIER||||648|ANKLE2|protein_coding|CODING|ENST00000337516|2|1),INTRON(MODIFIER||||876|ANKLE2|protein_coding|CODING|ENST00000539605|1|1),INTRON(MODIFIER||||938|ANKLE2|protein_coding|CODING|ENST00000357997|2|1),UPSTREAM(MODIFIER||||128|ANKLE2|protein_coding|CODING|ENST00000535036||1),UPSTREAM(MODIFIER||||250|ANKLE2|protein_coding|CODING|ENST00000545623||1),UPSTREAM(MODIFIER||||67|ANKLE2|protein_coding|CODING|ENST00000546061||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:0:0:0:0,0:29,30:0,0:0,0	65:0:0:0:0,0:61,61:4,4:0,0
12	133369553	.	A	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1134|GOLGA3|protein_coding|CODING|ENST00000537452|10|1),INTRON(MODIFIER||||1134|GOLGA3|protein_coding|CODING|ENST00000545875|11|1),INTRON(MODIFIER||||1390|GOLGA3|protein_coding|CODING|ENST00000456883|11|1),INTRON(MODIFIER||||1498|GOLGA3|protein_coding|CODING|ENST00000204726|11|1),INTRON(MODIFIER||||1498|GOLGA3|protein_coding|CODING|ENST00000450791|10|1),INTRON(MODIFIER||||2297|POLE|protein_coding|CODING|ENST00000455752|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	22:1:0:0:20,22:1,3:0,0:0,0	30:1:0:0:22,26:2,2:5,6:0,0
12	133417311	rs75167846	C	G	.	PASS	NT=ref;QSS=27;QSS_NT=27;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||664|CHFR|protein_coding|CODING|ENST00000432561||1),DOWNSTREAM(MODIFIER|||||CHFR|nonsense_mediated_decay|CODING|ENST00000541837||1),DOWNSTREAM(MODIFIER|||||CHFR|processed_transcript|CODING|ENST00000535527||1),DOWNSTREAM(MODIFIER|||||CHFR|processed_transcript|CODING|ENST00000538235||1),DOWNSTREAM(MODIFIER|||||CHFR|processed_transcript|CODING|ENST00000544093||1),DOWNSTREAM(MODIFIER|||||CHFR|processed_transcript|CODING|ENST00000545659||1),EXON(MODIFIER|||||CHFR|retained_intron|CODING|ENST00000536843|5|1),EXON(MODIFIER|||||CHFR|retained_intron|CODING|ENST00000544268|8|1),EXON(MODIFIER|||||CHFR|retained_intron|CODING|ENST00000545046|4|1),INTRON(MODIFIER|||||RP11-46H11.10|processed_transcript|NON_CODING|ENST00000541341|5|1),UPSTREAM(MODIFIER||||2297|POLE|protein_coding|CODING|ENST00000455752||1),UTR_3_PRIME(MODIFIER||||286|CHFR|protein_coding|CODING|ENST00000537522|10|1),UTR_3_PRIME(MODIFIER||||572|CHFR|protein_coding|CODING|ENST00000443047|16|1),UTR_3_PRIME(MODIFIER||||623|CHFR|protein_coding|CODING|ENST00000315585|18|1),UTR_3_PRIME(MODIFIER||||652|CHFR|protein_coding|CODING|ENST00000450056|18|1),UTR_3_PRIME(MODIFIER||||663|CHFR|protein_coding|CODING|ENST00000266880|19|1);RSPOS=133417311;dbSNPBuildID=131;SSR=0;SAO=0;VP=050000800201040002000100;GENEINFO=CHFR:55743;WGT=1;VC=SNV;REF;U3;VLD;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	44:0:0:0:0,0:44,44:0,0:0,0	85:3:0:0:0,0:69,73:13,14:0,0
13	19021738	.	T	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:1:0:0:0,0:0,0:0,0:34,38	69:1:0:0:0,0:0,1:7,7:61,63
13	19021760	.	T	C	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:1:0:0:0,1:0,0:0,0:36,39	68:1:0:0:0,0:7,7:0,0:60,62
13	19021778	.	C	T	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:1:0:0:0,0:38,42:0,0:0,0	66:0:0:0:0,0:59,60:0,0:7,8
13	19073957	.	G	T	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	43:3:0:0:0,0:0,0:40,44:0,1	92:2:0:0:0,0:0,0:80,86:10,16
13	20361580	.	T	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER||||247|PSPC1|protein_coding|CODING|ENST00000427943||1),UPSTREAM(MODIFIER||||523|PSPC1|protein_coding|CODING|ENST00000338910||1),UPSTREAM(MODIFIER|||||PSPC1|nonsense_mediated_decay|CODING|ENST00000471658||1),UPSTREAM(MODIFIER|||||PSPC1|nonsense_mediated_decay|CODING|ENST00000492741||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:1:0:0:0,0:0,0:1,1:30,32	77:1:0:0:0,0:4,4:0,0:72,73
13	21481746	.	T	C	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER||||1151|XPO4|protein_coding|CODING|ENST00000255305||1),UPSTREAM(MODIFIER||||1151|XPO4|protein_coding|CODING|ENST00000400602||1),UPSTREAM(MODIFIER|||||XPO4|processed_transcript|CODING|ENST00000465018||1),UPSTREAM(MODIFIER|||||XPO4|processed_transcript|CODING|ENST00000490513||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	42:0:0:0:0,0:0,0:0,0:42,42	61:0:0:0:0,0:6,6:0,0:55,56
13	21546445	.	C	T	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||1088|LATS2|protein_coding|CODING|ENST00000382592||1),DOWNSTREAM(MODIFIER||||1088|LATS2|protein_coding|CODING|ENST00000542899||1),DOWNSTREAM(MODIFIER|||||snoU13|snoRNA|NON_CODING|ENST00000458989||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:0:0:0:0,0:39,39:0,0:0,0	76:2:0:0:0,0:70,72:0,0:4,5
13	21951366	rs111664774	C	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||365|ZDHHC20|protein_coding|CODING|ENST00000415724||1),DOWNSTREAM(MODIFIER|||||ZDHHC20|processed_transcript|CODING|ENST00000484277||1),INTRON(MODIFIER||||292|ZDHHC20|protein_coding|CODING|ENST00000542645|10|1),INTRON(MODIFIER||||320|ZDHHC20|protein_coding|CODING|ENST00000320220|12|1),INTRON(MODIFIER||||354|ZDHHC20|protein_coding|CODING|ENST00000382466|11|1),INTRON(MODIFIER||||365|ZDHHC20|protein_coding|CODING|ENST00000400590|12|1),INTRON(MODIFIER|||||ZDHHC20-IT1|sense_intronic|NON_CODING|ENST00000417513|1|1),INTRON(MODIFIER|||||ZDHHC20|processed_transcript|CODING|ENST00000464055|3|1),INTRON(MODIFIER|||||ZDHHC20|processed_transcript|CODING|ENST00000477811|5|1),INTRON(MODIFIER|||||ZDHHC20|processed_transcript|CODING|ENST00000494731|9|1),UPSTREAM(MODIFIER||||126|AL136219.1|protein_coding|CODING|ENST00000400592||1);RSPOS=21951366;dbSNPBuildID=132;SSR=0;SAO=0;VP=050000080001000102000100;GENEINFO=MIPEPP3:650794|ZDHHC20:253832;WGT=1;VC=SNV;INT;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	25:0:0:0:0,0:25,28:0,0:0,1	45:1:0:0:0,0:38,41:0,0:6,8
13	22840278	.	A	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:0:0:0:31,31:0,0:0,0:0,0	66:1:0:0:60,62:5,5:0,0:0,0
13	23536921	.	G	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:0:0:0:1,1:0,0:36,36:0,0	83:7:0:0:5,8:0,1:71,74:0,0
13	23540510	.	G	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:1:0:0:0,0:0,0:28,30:0,0	100:5:0:0:0,0:0,0:88,94:7,13
13	23540512	.	A	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:1:0:0:28,30:1,1:0,0:0,0	100:5:0:0:87,93:0,0:8,14:0,0
13	23677643	.	T	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:1:0:0:0,0:0,0:0,0:39,41	77:1:0:0:0,0:9,10:0,0:67,67
13	23693764	.	C	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	27:0:0:0:0,0:27,27:0,0:0,0	70:1:0:0:7,7:62,64:0,0:0,0
13	23926442	.	G	A	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||SACS|processed_transcript|CODING|ENST00000476776||1),INTRON(MODIFIER||||374|SACS|protein_coding|CODING|ENST00000423156|2|1),INTRON(MODIFIER||||3829|SACS|protein_coding|CODING|ENST00000402364|7|1),INTRON(MODIFIER||||4579|SACS|protein_coding|CODING|ENST00000382292|8|1),INTRON(MODIFIER||||4579|SACS|protein_coding|CODING|ENST00000382298|9|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:0:0:0:0,0:0,0:35,35:0,0	79:0:0:0:7,7:0,0:72,73:0,0
13	25015758	.	G	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1724|PARP4|protein_coding|CODING|ENST00000381989|30|1),INTRON(MODIFIER|||||RP11-556N21.4|unprocessed_pseudogene|NON_CODING|ENST00000445572|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:2:0:0:0,0:0,0:36,38:0,0	78:1:0:0:0,0:4,4:73,74:0,0
13	25600494	rs79926283	C	T	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=25600494;dbSNPBuildID=131;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:0:0:0:0,0:39,39:0,0:0,0	83:0:0:0:0,0:78,78:0,0:5,6
13	25600495	rs74040908	A	G	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=25600495;dbSNPBuildID=130;SSR=0;SAO=0;VP=050100000005000102000100;WGT=1;VC=SNV;SLO;ASP;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:0:0:0:39,39:0,0:0,0:0,0	83:0:0:0:77,77:0,0:6,7:0,0
13	25733317	.	C	A	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||552|FAM123A|protein_coding|CODING|ENST00000357816||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	46:4:0:0:0,1:42,77:0,0:0,1	141:10:0:0:11,21:119,188:0,0:1,1
13	25733318	.	T	G	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||552|FAM123A|protein_coding|CODING|ENST00000357816||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	47:4:0:0:0,0:0,0:0,1:43,79	141:10:0:0:0,0:0,0:12,21:119,189
13	26270759	.	G	T	.	PASS	NT=ref;QSS=23;QSS_NT=23;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1123|ATP8A2|protein_coding|CODING|ENST00000255283|23|1),INTRON(MODIFIER||||1188|ATP8A2|protein_coding|CODING|ENST00000381655|24|1),INTRON(MODIFIER|||||ATP8A2|nonsense_mediated_decay|CODING|ENST00000281620|23|1),INTRON(MODIFIER|||||ATP8A2|processed_transcript|CODING|ENST00000491840|10|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:0:0:0:0,0:0,0:39,39:0,0	70:0:0:0:0,0:0,0:60,60:10,10
13	27688908	.	A	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||370|USP12|protein_coding|CODING|ENST00000282344|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	24:0:0:0:24,25:0,0:0,0:0,0	58:0:0:0:49,49:0,0:0,0:9,9
13	27923334	.	A	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:3:0:0:29,32:0,0:0,0:0,0	89:7:0:0:74,78:8,10:0,0:0,0
13	28637574	.	G	A	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||952|FLT3|protein_coding|CODING|ENST00000537084|2|1),INTRON(MODIFIER||||993|FLT3|protein_coding|CODING|ENST00000241453|2|1),INTRON(MODIFIER||||996|FLT3|protein_coding|CODING|ENST00000380982|2|1),INTRON(MODIFIER|||||FLT3|nonsense_mediated_decay|CODING|ENST00000380987|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	43:1:0:0:0,0:0,0:42,42:0,1	76:0:0:0:5,5:0,0:71,72:0,0
13	29266585	.	C	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:1:0:0:0,0:31,32:0,0:0,0	79:0:0:0:0,0:73,73:6,6:0,0
13	30133690	.	C	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||120|SLC7A1|protein_coding|CODING|ENST00000450494|1|1),INTRON(MODIFIER||||629|SLC7A1|protein_coding|CODING|ENST00000380752|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:0:0:0:0,0:30,32:0,0:0,0	83:2:0:0:0,0:76,84:5,6:0,0
13	30779780	.	A	T	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||490|KATNAL1|protein_coding|CODING|ENST00000380617||1),DOWNSTREAM(MODIFIER|||||AL356750.1|miRNA|NON_CODING|ENST00000579551||1),DOWNSTREAM(MODIFIER|||||KATNAL1|retained_intron|CODING|ENST00000480854||1),UTR_3_PRIME(MODIFIER||||490|KATNAL1|protein_coding|CODING|ENST00000380615|11|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:2:0:0:35,37:0,0:0,0:0,0	65:6:0:0:49,54:0,0:1,2:9,10
13	31753512	.	C	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:0:0:0:0,0:31,31:0,0:0,0	69:0:0:0:4,4:65,66:0,0:0,0
13	32182989	.	C	T	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	41:2:0:0:0,0:39,42:0,0:0,0	69:0:0:0:0,0:62,62:0,0:7,7
13	32704541	.	C	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||3013|FRY|protein_coding|CODING|ENST00000380250|7|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:2:0:0:0,0:28,30:0,0:0,0	72:3:0:0:0,0:61,63:8,9:0,0
13	33547944	.	G	T	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	41:1:0:0:0,0:0,0:40,41:0,0	67:0:0:0:0,0:0,0:59,59:8,8
13	34800520	.	G	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:0:0:0:0,0:0,0:31,31:0,0	61:1:0:0:0,0:0,0:55,56:5,5
13	35890678	.	C	G	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||2943|NBEA|protein_coding|CODING|ENST00000379939|36|1),INTRON(MODIFIER||||2946|NBEA|protein_coding|CODING|ENST00000310336|37|1),INTRON(MODIFIER||||2946|NBEA|protein_coding|CODING|ENST00000400445|36|1),INTRON(MODIFIER||||2946|NBEA|protein_coding|CODING|ENST00000540320|36|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:0:0:0:0,0:36,36:0,0:0,0	74:1:0:0:0,0:66,67:7,7:0,0
13	35993957	.	T	A	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||2943|NBEA|protein_coding|CODING|ENST00000379939|38|1),INTRON(MODIFIER||||2946|NBEA|protein_coding|CODING|ENST00000310336|39|1),INTRON(MODIFIER||||2946|NBEA|protein_coding|CODING|ENST00000400445|38|1),INTRON(MODIFIER||||2946|NBEA|protein_coding|CODING|ENST00000540320|38|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:1:0:0:0,0:0,0:0,0:36,37	81:1:0:0:6,6:1,1:0,0:73,74
13	37670700	.	T	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	28:0:0:0:0,0:0,0:0,0:28,28	78:0:0:0:4,4:0,0:0,0:74,74
13	38192377	.	T	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=TT->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:0:0:0:0,0:0,0:0,0:33,33	68:1:0:0:0,0:5,5:0,0:62,65
13	38192386	.	T	C	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:0:0:0:0,0:0,0:0,0:33,33	66:1:0:0:0,0:5,5:0,0:60,63
13	38784301	.	T	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:0:0:0:0,0:0,0:0,0:31,31	81:1:0:0:0,0:9,9:0,0:71,72
13	39272604	.	T	C	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||3169|FREM2|protein_coding|CODING|ENST00000280481|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	44:0:0:0:0,0:0,0:0,0:44,44	80:1:0:0:0,0:8,8:0,0:71,72
13	40798160	rs4572259	T	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||RNY3P9|misc_RNA|NON_CODING|ENST00000384727||1);RSPOS=40798160;dbSNPBuildID=111;SSR=16;SAO=0;VP=050000000005000502000100;WGT=1;VC=SNV;ASP;HD;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:1:0:0:1,1:0,0:0,1:29,29	82:0:0:0:0,0:8,8:0,0:74,74
13	41171759	.	G	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||655|FOXO1|protein_coding|CODING|ENST00000379561|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	25:0:0:0:0,0:0,0:25,25:0,0	59:0:0:0:8,8:0,0:51,51:0,0
13	41257767	.	C	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	24:1:0:0:0,0:23,25:0,0:0,0	57:5:0:0:0,0:45,52:7,8:0,0
13	42456223	.	C	A	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1039|VWA8|protein_coding|CODING|ENST00000281496|9|1),INTRON(MODIFIER||||1809|VWA8|protein_coding|CODING|ENST00000251030|10|1),INTRON(MODIFIER||||1905|VWA8|protein_coding|CODING|ENST00000379310|9|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:4:0:0:0,0:33,42:0,0:0,0	50:2:0:0:5,5:42,53:1,1:0,0
13	43555583	.	G	A	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||307|EPSTI1|protein_coding|CODING|ENST00000313624|1|1),INTRON(MODIFIER||||318|EPSTI1|protein_coding|CODING|ENST00000398762|1|1),INTRON(MODIFIER||||410|EPSTI1|protein_coding|CODING|ENST00000313640|1|1),INTRON(MODIFIER||||77|EPSTI1|protein_coding|CODING|ENST00000537828|1|1),INTRON(MODIFIER|||||EPSTI1|nonsense_mediated_decay|CODING|ENST00000538562|1|1),INTRON(MODIFIER|||||EPSTI1|processed_transcript|CODING|ENST00000476830|2|1),INTRON(MODIFIER|||||EPSTI1|processed_transcript|CODING|ENST00000536042|1|1),INTRON(MODIFIER|||||EPSTI1|processed_transcript|CODING|ENST00000542706|1|1),INTRON(MODIFIER|||||EPSTI1|retained_intron|CODING|ENST00000540470|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:0:0:0:0,0:0,0:33,34:0,0	89:1:0:0:10,10:0,0:78,80:0,0
13	43694491	.	G	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->GT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:0:0:0:0,0:0,0:37,37:0,0	63:1:0:0:0,0:0,0:52,54:10,10
13	45118492	.	C	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1073|TSC22D1|protein_coding|CODING|ENST00000458659|1|1),INTRON(MODIFIER||||570|TSC22D1|protein_coding|CODING|ENST00000501704|1|1),INTRON(MODIFIER|||||TSC22D1|processed_transcript|CODING|ENST00000460842|1|1),UPSTREAM(MODIFIER|||||TSC22D1|processed_transcript|CODING|ENST00000437455||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:0:0:0:0,0:33,33:0,0:0,0	77:0:0:0:8,8:68,68:1,1:0,0
13	45131151	.	T	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1073|TSC22D1|protein_coding|CODING|ENST00000458659|1|1),INTRON(MODIFIER||||570|TSC22D1|protein_coding|CODING|ENST00000501704|1|1),INTRON(MODIFIER|||||TSC22D1|processed_transcript|CODING|ENST00000460842|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	42:2:0:0:0,0:1,1:0,0:39,41	64:0:0:0:0,0:6,6:0,0:58,59
13	45950760	.	A	G	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=EXON(MODIFIER|||||TPT1-AS1|retained_intron|NON_CODING|ENST00000434849|1|1),INTRON(MODIFIER|||||TPT1-AS1|processed_transcript|NON_CODING|ENST00000405697|2|1),INTRON(MODIFIER|||||TPT1-AS1|processed_transcript|NON_CODING|ENST00000517509|4|1),INTRON(MODIFIER|||||TPT1-AS1|processed_transcript|NON_CODING|ENST00000520310|2|1),INTRON(MODIFIER|||||TPT1-AS1|processed_transcript|NON_CODING|ENST00000520590|4|1),INTRON(MODIFIER|||||TPT1-AS1|processed_transcript|NON_CODING|ENST00000520622|3|1),INTRON(MODIFIER|||||TPT1-AS1|processed_transcript|NON_CODING|ENST00000521336|3|1),INTRON(MODIFIER|||||TPT1-AS1|processed_transcript|NON_CODING|ENST00000521507|2|1),INTRON(MODIFIER|||||TPT1-AS1|processed_transcript|NON_CODING|ENST00000522845|2|1),INTRON(MODIFIER|||||TPT1-AS1|processed_transcript|NON_CODING|ENST00000523445|3|1),INTRON(MODIFIER|||||TPT1-AS1|processed_transcript|NON_CODING|ENST00000523506|2|1),INTRON(MODIFIER|||||TPT1-AS1|retained_intron|NON_CODING|ENST00000524062|2|1),UPSTREAM(MODIFIER|||||TPT1-AS1|processed_transcript|NON_CODING|ENST00000519454||1),UPSTREAM(MODIFIER|||||TPT1-AS1|processed_transcript|NON_CODING|ENST00000520585||1),UPSTREAM(MODIFIER|||||TPT1-AS1|processed_transcript|NON_CODING|ENST00000522673||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:0:0:0:35,35:0,0:0,0:0,0	70:0:0:0:65,65:0,0:5,5:0,0
13	46909652	.	T	C	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:1:0:0:0,0:0,0:0,0:39,39	73:0:0:0:0,0:5,5:0,0:68,68
13	54361761	.	G	A	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:1:0:0:0,0:0,0:36,37:0,0	75:1:0:0:8,9:0,0:66,66:0,0
13	54374043	.	C	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:0:0:0:0,0:29,29:0,0:0,0	77:1:0:0:9,9:67,70:0,0:0,0
13	55710910	.	A	G	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:0:0:0:30,30:0,0:0,0:0,0	73:1:0:0:63,64:0,0:9,9:0,0
13	56026512	.	C	T	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:0:0:0:0,0:35,35:0,0:0,0	65:1:0:0:0,0:56,57:0,0:8,8
13	58038288	.	A	G	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:0:0:0:38,38:0,0:0,0:0,0	89:0:0:0:81,81:0,0:8,8:0,0
13	58090792	.	C	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	28:0:0:0:0,0:28,28:0,0:0,0	83:1:0:0:0,0:72,72:0,0:10,11
13	58102602	.	C	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:0:0:0:0,0:31,31:0,0:0,0	88:0:0:0:0,0:84,84:0,0:4,4
13	58816982	.	A	T	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:1:0:0:38,39:0,0:0,0:0,0	86:0:0:0:78,79:0,0:0,0:8,8
13	62430888	.	A	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	27:0:0:0:27,27:0,0:0,0:0,0	69:1:0:0:63,64:0,0:5,5:0,0
13	64071763	.	G	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:0:0:0:0,0:0,0:33,33:0,0	71:1:0:0:0,0:0,0:66,68:4,4
13	64190364	.	T	C	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:0:0:0:0,0:0,0:0,0:35,35	83:1:0:0:0,0:5,5:0,0:77,79
13	65065169	.	T	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	28:1:0:0:0,1:0,0:0,0:27,27	69:0:0:0:0,0:0,0:6,6:63,63
13	65231262	.	G	A	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:0:0:0:0,0:0,0:37,37:0,0	74:1:0:0:6,6:0,0:67,68:0,0
13	68877928	.	A	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||HNRNPA1P18|processed_pseudogene|NON_CODING|ENST00000433537||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	28:0:0:0:28,29:0,0:0,0:0,0	84:0:0:0:78,79:0,0:6,6:0,0
13	68886591	.	G	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:0:0:0:0,0:0,0:32,32:0,0	78:1:0:0:0,0:5,5:72,73:0,0
13	70218592	.	C	T	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	41:1:0:0:0,0:40,41:0,0:0,0	81:1:0:0:0,0:70,72:0,0:10,10
13	70824986	rs3927732	C	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=70824986;RV;dbSNPBuildID=108;SSR=0;SAO=0;VP=050100000005000002000100;WGT=1;VC=SNV;SLO;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	22:0:0:0:1,1:21,21:0,0:0,0	66:1:0:0:0,0:55,57:0,0:10,10
13	71896543	rs9572715	C	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=71896543;dbSNPBuildID=119;SSR=0;SAO=0;VP=050000000015000002000100;WGT=1;VC=SNV;OTH;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	15:0:9:0:0,0:15,16:0,0:0,0	33:0:24:0:7,7:26,28:0,0:0,0
13	72030679	.	T	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||506|DACH1|protein_coding|CODING|ENST00000354591|6|1),INTRON(MODIFIER||||560|DACH1|protein_coding|CODING|ENST00000313174|7|1),INTRON(MODIFIER||||708|DACH1|protein_coding|CODING|ENST00000305425|10|1),INTRON(MODIFIER||||760|DACH1|protein_coding|CODING|ENST00000359684|11|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	27:0:0:0:0,0:0,0:1,1:26,26	68:0:0:0:9,9:0,0:0,0:59,59
13	72644655	.	G	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:0:0:0:0,0:0,0:33,33:0,0	94:0:0:0:0,0:0,0:83,84:11,11
13	73183622	.	T	G	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:0:0:0:0,0:0,0:0,0:37,37	65:0:0:0:0,0:0,0:7,7:58,58
13	75077631	.	T	C	.	PASS	NT=ref;QSS=24;QSS_NT=24;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	51:0:0:0:0,0:0,0:0,0:51,51	72:0:0:0:0,0:4,4:0,0:68,68
13	75310056	.	C	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:0:0:0:0,0:31,31:0,0:0,0	65:0:0:0:0,0:60,60:0,0:5,5
13	75384379	.	A	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	20:0:0:0:20,22:0,0:0,0:0,0	48:3:0:0:38,42:0,0:0,0:7,8
13	75892881	.	C	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1235|TBC1D4|protein_coding|CODING|ENST00000377625|10|1),INTRON(MODIFIER||||1290|TBC1D4|protein_coding|CODING|ENST00000431480|11|1),INTRON(MODIFIER||||1298|TBC1D4|protein_coding|CODING|ENST00000377636|12|1),INTRON(MODIFIER||||281|TBC1D4|protein_coding|CODING|ENST00000413735|5|1),INTRON(MODIFIER||||462|TBC1D4|protein_coding|CODING|ENST00000425511|12|1),INTRON(MODIFIER|||||TBC1D4|processed_transcript|CODING|ENST00000488955|2|1),UPSTREAM(MODIFIER|||||TBC1D4|processed_transcript|CODING|ENST00000493487||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:1:0:0:1,1:35,36:0,0:0,0	66:1:0:0:0,0:60,62:0,0:5,5
13	76155233	.	C	T	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||228|UCHL3|protein_coding|CODING|ENST00000419068|3|1),INTRON(MODIFIER||||230|UCHL3|protein_coding|CODING|ENST00000377595|6|1),INTRON(MODIFIER|||||RP11-29G8.3|processed_transcript|NON_CODING|ENST00000563635|6|1),INTRON(MODIFIER|||||RP11-29G8.3|processed_transcript|NON_CODING|ENST00000570285|3|1),INTRON(MODIFIER|||||UCHL3|processed_transcript|CODING|ENST00000471792|5|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:0:0:0:0,0:37,37:0,0:0,0	75:0:0:0:0,0:68,68:0,0:7,7
13	76159595	.	G	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||228|UCHL3|protein_coding|CODING|ENST00000419068|3|1),INTRON(MODIFIER||||230|UCHL3|protein_coding|CODING|ENST00000377595|6|1),INTRON(MODIFIER|||||RP11-29G8.3|processed_transcript|NON_CODING|ENST00000563635|6|1),INTRON(MODIFIER|||||RP11-29G8.3|processed_transcript|NON_CODING|ENST00000570285|3|1),INTRON(MODIFIER|||||UCHL3|processed_transcript|CODING|ENST00000471792|5|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:0:0:0:0,0:0,0:30,30:0,0	72:1:0:0:0,0:6,6:65,66:0,0
13	76754869	.	C	G	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:0:0:0:0,0:40,40:0,0:0,0	72:0:0:0:0,0:68,68:4,4:0,0
13	76869419	.	G	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:0:0:0:0,0:0,0:34,36:0,0	87:1:0:0:0,0:0,0:79,81:7,7
13	78259085	.	A	G	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:0:0:0:39,47:0,0:0,0:0,0	75:1:0:0:69,80:0,0:5,6:0,0
13	78568308	.	T	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||RP11-318G21.2|lincRNA|NON_CODING|ENST00000452933||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	28:0:0:0:0,0:0,0:0,0:28,28	71:0:0:0:0,0:4,4:0,0:67,67
13	80730185	rs200478241	A	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=AA->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=80730185;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:2:0:0:32,34:0,0:0,1:0,0	81:1:0:0:70,75:1,1:9,11:0,0
13	80781511	.	A	G	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:0:0:0:32,32:0,0:0,0:0,0	57:1:0:0:51,53:0,0:5,5:0,0
13	81673593	.	G	T	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	27:0:0:0:0,0:0,0:27,27:0,0	75:5:0:0:0,0:0,0:57,61:13,14
13	82103069	.	A	G	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:1:0:0:34,35:0,0:0,0:0,0	77:1:0:0:68,69:0,0:8,8:0,0
13	82326755	.	G	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:0:0:0:0,0:0,0:34,35:0,0	79:1:0:0:5,8:0,0:73,74:0,0
13	82326759	.	C	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:0:0:0:0,0:32,33:0,0:0,0	77:1:0:0:5,8:71,72:0,0:0,0
13	82509214	.	G	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:0:0:0:0,0:0,0:31,32:0,0	76:0:0:0:0,0:4,4:72,72:0,0
13	83844644	.	C	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:0:0:0:0,0:33,33:0,0:0,0	63:0:0:0:0,0:56,56:0,0:7,7
13	85096007	.	C	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||MTND4P1|processed_pseudogene|NON_CODING|ENST00000457501||1),EXON(MODIFIER|||||MTND5P3|processed_pseudogene|NON_CODING|ENST00000438536|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:1:0:0:0,0:37,38:0,0:0,0	79:0:0:0:0,0:74,74:0,0:5,5
13	88265531	.	C	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||MIR4500HG|processed_transcript|NON_CODING|ENST00000453832||1),INTRON(MODIFIER|||||MIR4500HG|processed_transcript|NON_CODING|ENST00000436290|1|1),INTRON(MODIFIER|||||MIR4500HG|processed_transcript|NON_CODING|ENST00000441617|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:0:0:0:0,0:29,29:0,0:0,0	62:0:0:0:5,5:56,56:0,0:1,1
13	88265588	.	G	C	.	PASS	NT=ref;QSS=23;QSS_NT=23;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||MIR4500HG|processed_transcript|NON_CODING|ENST00000453832||1),INTRON(MODIFIER|||||MIR4500HG|processed_transcript|NON_CODING|ENST00000436290|1|1),INTRON(MODIFIER|||||MIR4500HG|processed_transcript|NON_CODING|ENST00000441617|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	45:0:0:0:0,0:0,0:45,45:0,0	56:2:0:0:0,1:4,4:50,51:0,0
13	90941780	.	C	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	27:1:0:0:0,0:26,27:0,0:0,0	74:1:0:0:0,0:64,65:0,0:9,9
13	91168184	.	C	A	.	PASS	NT=ref;QSS=23;QSS_NT=23;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-158A8.1|lincRNA|NON_CODING|ENST00000426840|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	46:2:0:0:0,0:44,47:0,0:0,0	64:0:0:0:7,7:57,57:0,0:0,0
13	92461315	.	T	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||572|GPC5|protein_coding|CODING|ENST00000377067|5|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	28:1:0:0:0,0:0,0:0,0:27,28	77:0:0:0:0,0:9,9:0,0:68,68
13	93702654	.	G	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	28:1:0:0:0,0:0,0:27,31:0,0	49:2:0:0:0,0:0,0:43,50:4,5
13	94182677	.	C	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||555|GPC6|protein_coding|CODING|ENST00000377047|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:0:0:0:0,0:35,35:0,0:0,0	67:1:0:0:0,1:62,62:0,0:4,4
13	95921748	.	G	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1278|ABCC4|protein_coding|CODING|ENST00000412704|1|1),INTRON(MODIFIER||||1325|ABCC4|protein_coding|CODING|ENST00000376887|1|1),INTRON(MODIFIER||||24|ABCC4|protein_coding|CODING|ENST00000538287|1|1),INTRON(MODIFIER||||784|ABCC4|protein_coding|CODING|ENST00000536256|1|1),INTRON(MODIFIER||||859|ABCC4|protein_coding|CODING|ENST00000431522|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:1:0:0:0,0:0,0:35,36:0,0	86:1:0:0:1,1:0,0:77,78:7,7
13	99782644	.	T	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:0:0:0:0,0:0,0:0,0:29,29	59:0:0:0:0,0:5,5:0,0:54,54
13	100115483	.	A	G	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	41:3:1:0:38,50:0,0:0,0:0,1	89:0:0:0:84,107:0,0:5,8:0,0
13	102859342	.	C	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||252|FGF14|protein_coding|CODING|ENST00000376131|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:0:0:0:0,0:33,34:0,0:0,0	88:2:0:0:4,4:82,84:0,0:0,0
13	104077177	.	G	T	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||RP11-123H22.1|lincRNA|NON_CODING|ENST00000444795||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:0:0:0:0,0:0,0:38,38:0,0	92:1:0:0:0,0:1,1:77,78:13,13
13	105439074	rs60887948	T	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=105439074;dbSNPBuildID=129;SSR=0;SAO=0;VP=050000000001000002000100;WGT=1;VC=SNV;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	26:0:0:0:0,0:0,0:0,0:26,30	59:4:0:0:0,0:6,8:2,2:47,53
13	105644544	.	T	C	.	PASS	NT=ref;QSS=23;QSS_NT=23;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	46:1:0:0:0,0:0,0:0,0:45,46	75:0:0:0:0,0:7,7:0,0:68,68
13	107587286	.	T	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:0:0:0:0,0:0,1:0,0:33,35	67:1:0:0:0,0:10,14:0,0:56,57
13	107967299	.	C	A	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||458|FAM155A|protein_coding|CODING|ENST00000375915|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:0:0:0:0,0:32,33:0,0:0,0	61:1:0:0:8,9:52,53:0,0:0,0
13	108105285	.	A	C	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||458|FAM155A|protein_coding|CODING|ENST00000375915|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:1:0:0:36,37:0,0:0,0:0,0	73:0:0:0:66,66:7,7:0,0:0,0
13	109644021	rs277805	T	C	.	PASS	NT=ref;QSS=25;QSS_NT=25;SGT=TT->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER||||1858|MYO16|protein_coding|CODING|ENST00000356711|20|1),INTRON(MODIFIER||||1858|MYO16|protein_coding|CODING|ENST00000357550|19|1),INTRON(MODIFIER||||857|MYO16|protein_coding|CODING|ENST00000457511|8|1),INTRON(MODIFIER||||878|MYO16|protein_coding|CODING|ENST00000375857|15|1),INTRON(MODIFIER||||940|MYO16|protein_coding|CODING|ENST00000251041|19|1);RSPOS=109644021;RV;dbSNPBuildID=79;SSR=0;SAO=0;VP=050000080005040102000100;GENEINFO=MYO16:23026;WGT=1;VC=SNV;INT;ASP;VLD;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:1:0:0:0,0:0,1:0,0:39,44	105:1:0:0:0,0:19,22:0,0:85,91
13	110141832	.	T	A	.	PASS	NT=ref;QSS=23;QSS_NT=23;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	46:0:0:0:0,0:0,0:1,1:45,45	76:1:0:0:6,6:0,0:0,0:69,70
13	111037829	.	T	C	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=TT->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER||||104|COL4A2|protein_coding|CODING|ENST00000400163|4|1),INTRON(MODIFIER||||1712|COL4A2|protein_coding|CODING|ENST00000360467|4|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	44:1:0:0:0,0:0,3:1,1:42,81	142:10:0:0:0,0:13,22:0,0:119,195
13	112273937	.	G	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||65|RP11-65D24.2|protein_coding|CODING|ENST00000375713|1|1),INTRON(MODIFIER|||||RP11-65D24.1|processed_transcript|NON_CODING|ENST00000401043|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:9:0:0:0,0:0,0:26,53:0,0	71:28:0:0:6,6:0,0:37,97:0,0
13	112802966	.	A	G	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	27:0:0:0:27,28:0,0:0,1:0,0	68:3:0:0:55,58:0,0:10,19:0,0
13	112889179	.	G	A	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:0:0:0:0,0:0,0:40,40:0,0	83:0:0:0:6,6:0,0:77,77:0,0
13	112934176	.	C	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	94:6:0:0:0,0:87,106:1,1:0,1	174:4:0:0:1,1:162,197:0,0:7,11
13	112939773	.	G	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	59:0:0:0:1,2:0,1:58,61:0,0	114:7:0:0:11,12:0,1:96,115:0,1
13	113147638	.	T	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||907|TUBGCP3|protein_coding|CODING|ENST00000261965|20|1),UPSTREAM(MODIFIER|||||TUBGCP3|processed_transcript|CODING|ENST00000469302||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:1:0:0:0,0:0,0:0,0:32,35	75:13:0:0:1,1:0,0:8,14:53,67
13	113687453	.	C	T	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1067|MCF2L|protein_coding|CODING|ENST00000421756|3|1),INTRON(MODIFIER||||1096|MCF2L|protein_coding|CODING|ENST00000397030|3|1),INTRON(MODIFIER||||1113|MCF2L|protein_coding|CODING|ENST00000434480|3|1),INTRON(MODIFIER||||1123|MCF2L|protein_coding|CODING|ENST00000423482|3|1),INTRON(MODIFIER||||1125|MCF2L|protein_coding|CODING|ENST00000535094|3|1),INTRON(MODIFIER||||1129|MCF2L|protein_coding|CODING|ENST00000375601|3|1),INTRON(MODIFIER||||1137|MCF2L|protein_coding|CODING|ENST00000375608|4|1),INTRON(MODIFIER||||1137|MCF2L|protein_coding|CODING|ENST00000442652|3|1),INTRON(MODIFIER||||1182|MCF2L|protein_coding|CODING|ENST00000375604|3|1),INTRON(MODIFIER||||135|MCF2L|protein_coding|CODING|ENST00000409954|3|1),INTRON(MODIFIER||||984|MCF2L|protein_coding|CODING|ENST00000375597|3|1),INTRON(MODIFIER|||||MCF2L|processed_transcript|CODING|ENST00000473345|1|1),INTRON(MODIFIER|||||MCF2L|processed_transcript|CODING|ENST00000486806|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:5:0:0:0,0:35,50:0,0:0,1	86:12:0:0:0,0:66,93:0,1:8,13
13	113881865	.	T	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||659|CUL4A|protein_coding|CODING|ENST00000326335|3|1),INTRON(MODIFIER||||659|CUL4A|protein_coding|CODING|ENST00000375441|3|1),INTRON(MODIFIER||||659|CUL4A|protein_coding|CODING|ENST00000451881|3|1),INTRON(MODIFIER||||759|CUL4A|protein_coding|CODING|ENST00000375440|3|1),INTRON(MODIFIER|||||CUL4A|processed_transcript|CODING|ENST00000463426|2|1),INTRON(MODIFIER|||||CUL4A|processed_transcript|CODING|ENST00000488558|3|1),INTRON(MODIFIER|||||CUL4A|processed_transcript|CODING|ENST00000494985|2|1),INTRON(MODIFIER|||||CUL4A|processed_transcript|CODING|ENST00000498562|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	28:0:0:0:0,0:0,0:0,0:28,28	66:0:0:0:0,0:0,0:6,6:60,60
13	114080275	.	T	C	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||175|ADPRHL1|protein_coding|CODING|ENST00000413169|5|1),INTRON(MODIFIER||||272|ADPRHL1|protein_coding|CODING|ENST00000356501|4|1),INTRON(MODIFIER||||354|ADPRHL1|protein_coding|CODING|ENST00000375418|4|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:0:0:0:0,0:0,0:1,1:36,37	90:2:0:0:0,0:5,6:0,0:83,84
13	114168811	rs2805614	A	G	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=AA->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER||||414|TMCO3|protein_coding|CODING|ENST00000375391|7|1),INTRON(MODIFIER||||677|TMCO3|protein_coding|CODING|ENST00000434316|7|1),INTRON(MODIFIER|||||TMCO3|processed_transcript|CODING|ENST00000462877|3|1),INTRON(MODIFIER|||||TMCO3|processed_transcript|CODING|ENST00000474393|7|1);RSPOS=114168811;GMAF=0.0929;dbSNPBuildID=100;SSR=0;SAO=0;VP=050000080005000516000100;GENEINFO=TMCO3:55002;WGT=1;VC=SNV;INT;ASP;HD;GNO;KGPhase1;KGPROD;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:1:0:0:31,31:0,1:0,0:0,0	64:1:0:0:52,56:0,0:11,11:0,0
13	114493810	.	C	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||161|FAM70B|protein_coding|CODING|ENST00000375348|3|1),INTRON(MODIFIER||||326|FAM70B|protein_coding|CODING|ENST00000375353|3|1),INTRON(MODIFIER|||||FAM70B|processed_transcript|CODING|ENST00000488362|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:0:0:0:0,0:31,32:0,0:0,0	69:1:0:0:0,0:63,66:5,6:0,0
13	114532440	.	G	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||379|GAS6|protein_coding|CODING|ENST00000418959|2|1),INTRON(MODIFIER||||405|GAS6|protein_coding|CODING|ENST00000450766|4|1),INTRON(MODIFIER||||624|GAS6|protein_coding|CODING|ENST00000355761|8|1),INTRON(MODIFIER||||678|GAS6|protein_coding|CODING|ENST00000327773|10|1),INTRON(MODIFIER||||721|GAS6|protein_coding|CODING|ENST00000357389|10|1),INTRON(MODIFIER|||||GAS6-AS1|antisense|NON_CODING|ENST00000458001|1|1),INTRON(MODIFIER|||||GAS6|processed_transcript|CODING|ENST00000480426|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:7:0:0:0,0:0,0:32,40:0,0	63:9:0:0:0,1:5,5:49,58:0,0
13	114541756	.	G	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||624|GAS6|protein_coding|CODING|ENST00000355761|3|1),INTRON(MODIFIER||||678|GAS6|protein_coding|CODING|ENST00000327773|5|1),INTRON(MODIFIER||||721|GAS6|protein_coding|CODING|ENST00000357389|5|1),INTRON(MODIFIER|||||GAS6-AS1|antisense|NON_CODING|ENST00000458001|4|1),UPSTREAM(MODIFIER||||405|GAS6|protein_coding|CODING|ENST00000450766||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:2:0:0:0,0:0,0:31,33:0,0	67:6:0:0:0,0:5,6:56,61:0,0
13	114579221	.	G	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=DOWNSTREAM(MODIFIER|||||LINC00454|lincRNA|NON_CODING|ENST00000425483||1),DOWNSTREAM(MODIFIER|||||LINC00454|lincRNA|NON_CODING|ENST00000430978||1),DOWNSTREAM(MODIFIER|||||LINC00454|lincRNA|NON_CODING|ENST00000442500||1),INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||RP11-199F6.4|lincRNA|NON_CODING|ENST00000449453||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	88:29:1:0:0,3:0,1:59,135:0,1	143:29:0:0:10,16:1,1:103,207:0,0
13	114828123	.	G	A	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||132|RASA3|protein_coding|CODING|ENST00000542651|2|1),INTRON(MODIFIER||||802|RASA3|protein_coding|CODING|ENST00000389544|2|1),INTRON(MODIFIER||||834|RASA3|protein_coding|CODING|ENST00000334062|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	44:3:0:0:0,0:0,1:41,44:0,0	114:6:0:0:6,9:1,3:101,105:0,0
13	114832762	.	A	G	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||132|RASA3|protein_coding|CODING|ENST00000542651|2|1),INTRON(MODIFIER||||802|RASA3|protein_coding|CODING|ENST00000389544|2|1),INTRON(MODIFIER||||834|RASA3|protein_coding|CODING|ENST00000334062|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	49:3:0:0:46,49:0,0:0,0:0,0	87:1:0:0:81,81:0,0:5,6:0,0
13	114843021	.	C	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||132|RASA3|protein_coding|CODING|ENST00000542651|1|1),INTRON(MODIFIER||||802|RASA3|protein_coding|CODING|ENST00000389544|1|1),INTRON(MODIFIER||||834|RASA3|protein_coding|CODING|ENST00000334062|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	24:1:0:0:0,0:23,24:0,0:0,0	49:1:0:0:0,0:40,42:0,0:8,8
13	114879519	rs9525269	T	C	.	PASS	NT=ref;QSS=27;QSS_NT=27;SGT=TT->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER||||132|RASA3|protein_coding|CODING|ENST00000542651|1|1),INTRON(MODIFIER||||834|RASA3|protein_coding|CODING|ENST00000334062|1|1);RSPOS=114879519;GMAF=0.0343;dbSNPBuildID=119;SSR=0;SAO=0;VP=050100080001040116000100;GENEINFO=RASA3:22821;WGT=1;VC=SNV;SLO;INT;VLD;GNO;KGPhase1;KGPROD;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	44:2:0:0:0,0:0,2:0,0:42,44	89:1:0:0:1,1:19,20:0,0:68,73
14	19004634	.	G	A	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	44:3:0:0:0,0:0,0:41,48:0,0	118:1:0:0:6,7:1,1:110,118:0,0
14	19016915	.	T	C	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	68:2:0:0:0,0:0,6:1,1:65,80	169:6:0:0:1,1:5,16:1,1:156,201
14	19016943	.	T	C	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=TT->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	70:4:0:0:0,0:0,6:0,0:66,83	167:8:0:0:0,2:6,19:0,1:153,194
14	19016946	.	G	T	.	PASS	NT=ref;QSS=27;QSS_NT=27;SGT=GG->GT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	70:4:0:0:0,0:0,2:66,83:0,4	167:7:0:0:1,1:0,1:153,200:6,15
14	19025534	rs199768013	C	A	.	PASS	NT=ref;QSS=26;QSS_NT=26;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=19025534;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	86:15:0:0:0,0:71,89:0,0:0,0	171:21:0:0:6,8:144,175:0,3:0,0
14	19025579	rs149881569	C	T	.	PASS	NT=ref;QSS=29;QSS_NT=29;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=19025579;dbSNPBuildID=134;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	85:4:0:0:0,0:81,92:0,0:0,0	190:3:0:0:0,2:180,199:0,0:7,8
14	19047186	.	T	A	.	PASS	NT=ref;QSS=41;QSS_NT=41;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	87:3:0:0:0,0:0,1:0,0:84,94	233:15:1:0:10,12:0,3:0,0:208,235
14	19053052	.	A	T	.	PASS	NT=ref;QSS=23;QSS_NT=23;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	79:1:0:0:77,79:0,0:0,0:1,1	134:1:0:0:124,129:1,1:0,0:8,12
14	19102884	.	G	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	85:0:0:0:0,2:0,0:85,85:0,0	172:3:0:0:9,13:0,0:160,163:0,0
14	19275851	.	C	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:1:0:0:0,0:29,32:0,0:0,0	73:0:0:0:0,0:66,66:7,7:0,0
14	19323536	.	C	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	50:1:0:0:0,0:48,49:0,0:1,1	101:0:0:0:0,0:96,106:0,0:5,6
14	19412437	.	C	T	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||RP11-536C10.8|processed_transcript|NON_CODING|ENST00000548793||1),DOWNSTREAM(MODIFIER|||||RP11-536C10.8|processed_transcript|NON_CODING|ENST00000557216||1),EXON(MODIFIER|||||RP11-536C10.12|processed_pseudogene|NON_CODING|ENST00000548656|1|1),INTRON(MODIFIER|||||RP11-536C10.13|unprocessed_pseudogene|NON_CODING|ENST00000550518|1|1),UPSTREAM(MODIFIER|||||RP11-536C10.16|lincRNA|NON_CODING|ENST00000550928||1),UPSTREAM(MODIFIER|||||RP11-536C10.7|lincRNA|NON_CODING|ENST00000548050||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	24:0:0:0:0,0:24,25:0,0:0,0	32:1:0:0:0,0:25,26:0,0:6,7
14	19416157	.	T	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||RP11-536C10.16|lincRNA|NON_CODING|ENST00000550928||1),INTRON(MODIFIER|||||RP11-536C10.13|unprocessed_pseudogene|NON_CODING|ENST00000550518|1|1),INTRON(MODIFIER|||||RP11-536C10.8|processed_transcript|NON_CODING|ENST00000548793|8|1),INTRON(MODIFIER|||||RP11-536C10.8|processed_transcript|NON_CODING|ENST00000557216|5|1),UPSTREAM(MODIFIER|||||RP11-536C10.12|processed_pseudogene|NON_CODING|ENST00000548656||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:1:0:0:0,0:0,0:0,0:33,35	95:0:0:0:0,0:7,8:0,0:88,92
14	19553723	.	T	C	.	PASS	NT=ref;QSS=28;QSS_NT=28;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=EXON(MODIFIER|||||POTEG|nonsense_mediated_decay|CODING|ENST00000547889|1|1),EXON(MODIFIER|||||POTEG|nonsense_mediated_decay|CODING|ENST00000552966|1|1),NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|Tgc/Cgc|C103R|508|POTEG|protein_coding|CODING|ENST00000409832|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	67:0:0:0:0,0:1,1:0,0:66,73	126:1:0:0:0,0:12,15:1,1:112,121
14	19630243	.	C	A	.	PASS	NT=ref;QSS=26;QSS_NT=26;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||CTD-2314B22.1|lincRNA|NON_CODING|ENST00000546734|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	84:33:0:0:0,4:51,170:0,1:0,1	174:53:0:0:11,19:110,328:0,2:0,3
14	19797179	.	G	A	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-496I2.3|lincRNA|NON_CODING|ENST00000550717|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	46:1:0:0:0,0:0,0:45,52:0,1	127:0:0:0:5,5:0,0:122,128:0,0
14	19799272	rs147733008	C	G	.	PASS	NT=ref;QSS=26;QSS_NT=26;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-496I2.3|lincRNA|NON_CODING|ENST00000550717|2|1);RSPOS=19799272;dbSNPBuildID=134;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:1:0:0:0,0:35,36:0,1:0,0	71:3:0:0:0,0:56,59:12,18:0,0
14	19819225	.	G	A	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=GG->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER|||||RP11-146E13.4|lincRNA|NON_CODING|ENST00000548109|1|1),INTRON(MODIFIER|||||RP11-496I2.3|lincRNA|NON_CODING|ENST00000550717|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	65:2:0:0:0,2:0,0:63,63:0,2	154:1:0:0:9,9:0,0:144,145:0,0
14	19868879	rs199642052	T	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||CTD-2314B22.3|lincRNA|NON_CODING|ENST00000546382||1),INTRON(MODIFIER|||||CTD-2314B22.3|lincRNA|NON_CODING|ENST00000551334|4|1),INTRON(MODIFIER|||||RP11-496I2.3|lincRNA|NON_CODING|ENST00000550717|1|1);RSPOS=19868879;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:0:0:0:0,0:0,0:0,0:32,33	98:2:0:0:0,0:6,8:0,0:90,100
14	20680637	.	C	A	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||AL356019.1|miRNA|NON_CODING|ENST00000579172||1),DOWNSTREAM(MODIFIER|||||OR11H5P|unprocessed_pseudogene|NON_CODING|ENST00000554039||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	41:1:0:0:0,0:39,44:0,0:1,1	117:3:0:0:14,15:97,125:1,1:2,2
14	20681295	.	G	A	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||AL356019.1|miRNA|NON_CODING|ENST00000579172||1),DOWNSTREAM(MODIFIER|||||OR11H5P|unprocessed_pseudogene|NON_CODING|ENST00000554039||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	47:6:0:0:0,0:0,0:41,51:0,0	73:6:0:0:4,5:0,0:63,70:0,0
14	21046658	.	G	A	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||199|RNASE11|protein_coding|CODING|ENST00000335950||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:0:0:0:0,0:0,0:34,34:0,0	61:1:0:0:4,4:0,0:56,57:0,0
14	21679244	.	A	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||125|HNRNPC|protein_coding|CODING|ENST00000554891||1),DOWNSTREAM(MODIFIER||||174|HNRNPC|protein_coding|CODING|ENST00000555137||1),DOWNSTREAM(MODIFIER||||179|HNRNPC|protein_coding|CODING|ENST00000554539||1),DOWNSTREAM(MODIFIER||||186|HNRNPC|protein_coding|CODING|ENST00000555215||1),DOWNSTREAM(MODIFIER||||213|HNRNPC|protein_coding|CODING|ENST00000557157||1),DOWNSTREAM(MODIFIER||||261|HNRNPC|protein_coding|CODING|ENST00000554383||1),DOWNSTREAM(MODIFIER||||306|HNRNPC|protein_coding|CODING|ENST00000420743||1),DOWNSTREAM(MODIFIER|||||HNRNPC|retained_intron|CODING|ENST00000554417||1),DOWNSTREAM(MODIFIER|||||HNRNPC|retained_intron|CODING|ENST00000555585||1),EXON(MODIFIER|||||HNRNPC|retained_intron|CODING|ENST00000553444|3|1),UPSTREAM(MODIFIER|||||LINC00641|lincRNA|NON_CODING|ENST00000555688||1),UTR_3_PRIME(MODIFIER||||226|HNRNPC|protein_coding|CODING|ENST00000556628|8|1),UTR_3_PRIME(MODIFIER||||231|HNRNPC|protein_coding|CODING|ENST00000556142|7|1),UTR_3_PRIME(MODIFIER||||231|HNRNPC|protein_coding|CODING|ENST00000556513|9|1),UTR_3_PRIME(MODIFIER||||250|HNRNPC|protein_coding|CODING|ENST00000555883|8|1),UTR_3_PRIME(MODIFIER||||288|HNRNPC|protein_coding|CODING|ENST00000336053|7|1),UTR_3_PRIME(MODIFIER||||288|HNRNPC|protein_coding|CODING|ENST00000553753|8|1),UTR_3_PRIME(MODIFIER||||292|HNRNPC|protein_coding|CODING|ENST00000555914|9|1),UTR_3_PRIME(MODIFIER||||293|HNRNPC|protein_coding|CODING|ENST00000430246|8|1),UTR_3_PRIME(MODIFIER||||293|HNRNPC|protein_coding|CODING|ENST00000449098|8|1),UTR_3_PRIME(MODIFIER||||293|HNRNPC|protein_coding|CODING|ENST00000553300|9|1),UTR_3_PRIME(MODIFIER||||293|HNRNPC|protein_coding|CODING|ENST00000554969|10|1),UTR_3_PRIME(MODIFIER||||293|HNRNPC|protein_coding|CODING|ENST00000556897|8|1),UTR_3_PRIME(MODIFIER||||305|HNRNPC|protein_coding|CODING|ENST00000555309|9|1),UTR_3_PRIME(MODIFIER||||306|HNRNPC|protein_coding|CODING|ENST00000320084|8|1),UTR_3_PRIME(MODIFIER||||306|HNRNPC|protein_coding|CODING|ENST00000554455|9|1),UTR_3_PRIME(MODIFIER||||306|HNRNPC|protein_coding|CODING|ENST00000557201|8|1),UTR_3_PRIME(MODIFIER|||||HNRNPC|nonsense_mediated_decay|CODING|ENST00000557442|8|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	44:0:0:0:42,42:0,0:1,1:1,1	69:2:0:0:61,62:0,0:6,9:0,0
14	21896021	.	T	C	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=TT->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=DOWNSTREAM(MODIFIER||||150|CHD8|protein_coding|CODING|ENST00000553622||1),DOWNSTREAM(MODIFIER||||97|CHD8|protein_coding|CODING|ENST00000553283||1),DOWNSTREAM(MODIFIER|||||CHD8|processed_transcript|CODING|ENST00000553651||1),DOWNSTREAM(MODIFIER|||||CHD8|processed_transcript|CODING|ENST00000556833||1),DOWNSTREAM(MODIFIER|||||Metazoa_SRP|misc_RNA|NON_CODING|ENST00000583681||1),INTRON(MODIFIER||||2302|CHD8|protein_coding|CODING|ENST00000430710|4|1),INTRON(MODIFIER||||2581|CHD8|protein_coding|CODING|ENST00000399982|3|1),INTRON(MODIFIER||||2581|CHD8|protein_coding|CODING|ENST00000557364|4|1),INTRON(MODIFIER|||||CHD8|processed_transcript|CODING|ENST00000555962|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	50:1:0:0:0,0:0,1:1,1:48,49	62:0:0:0:0,0:8,8:0,0:54,54
14	24027197	.	A	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||121|THTPA|protein_coding|CODING|ENST00000557630||1),DOWNSTREAM(MODIFIER||||196|AP1G2|protein_coding|CODING|ENST00000554477||1),DOWNSTREAM(MODIFIER||||640|AP1G2|protein_coding|CODING|ENST00000535852||1),DOWNSTREAM(MODIFIER||||785|AP1G2|protein_coding|CODING|ENST00000308724||1),DOWNSTREAM(MODIFIER||||785|AP1G2|protein_coding|CODING|ENST00000397120||1),DOWNSTREAM(MODIFIER|||||AP1G2|processed_transcript|CODING|ENST00000555118||1),DOWNSTREAM(MODIFIER|||||AP1G2|processed_transcript|CODING|ENST00000555510||1),DOWNSTREAM(MODIFIER|||||AP1G2|retained_intron|CODING|ENST00000460049||1),DOWNSTREAM(MODIFIER|||||AP1G2|retained_intron|CODING|ENST00000465445||1),DOWNSTREAM(MODIFIER|||||AP1G2|retained_intron|CODING|ENST00000554554||1),DOWNSTREAM(MODIFIER|||||AP1G2|retained_intron|CODING|ENST00000554892||1),DOWNSTREAM(MODIFIER|||||AP1G2|retained_intron|CODING|ENST00000554982||1),DOWNSTREAM(MODIFIER|||||AP1G2|retained_intron|CODING|ENST00000555258||1),DOWNSTREAM(MODIFIER|||||AP1G2|retained_intron|CODING|ENST00000556966||1),DOWNSTREAM(MODIFIER|||||AP1G2|retained_intron|CODING|ENST00000557391||1),INTRON(MODIFIER||||105|THTPA|protein_coding|CODING|ENST00000554789|1|1),INTRON(MODIFIER||||105|THTPA|protein_coding|CODING|ENST00000556015|2|1),INTRON(MODIFIER||||140|THTPA|protein_coding|CODING|ENST00000554970|2|1),INTRON(MODIFIER||||230|THTPA|protein_coding|CODING|ENST00000288014|1|1),INTRON(MODIFIER||||230|THTPA|protein_coding|CODING|ENST00000404535|2|1),INTRON(MODIFIER|||||RP11-66N24.4|antisense|NON_CODING|ENST00000553985|2|1),INTRON(MODIFIER|||||RP11-66N24.4|antisense|NON_CODING|ENST00000555446|1|1),INTRON(MODIFIER|||||RP11-66N24.4|antisense|NON_CODING|ENST00000556354|4|1),UPSTREAM(MODIFIER||||99|ZFHX2|protein_coding|CODING|ENST00000412565||1),UPSTREAM(MODIFIER|||||RP11-66N24.3|antisense|NON_CODING|ENST00000555968||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:0:0:0:34,34:0,0:0,0:0,0	67:1:0:0:62,62:4,5:0,0:0,0
14	24072971	.	C	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:2:0:0:0,0:27,29:0,0:0,0	65:1:0:0:6,6:58,59:0,0:0,0
14	24880141	.	C	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1898|NYNRIN|protein_coding|CODING|ENST00000382554|4|1),UPSTREAM(MODIFIER|||||NYNRIN|processed_transcript|CODING|ENST00000554505||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:0:0:0:0,0:33,34:0,0:0,0	77:2:0:0:0,0:69,71:0,0:6,6
14	25588278	.	G	A	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	41:2:0:0:0,0:0,0:39,41:0,0	73:2:0:0:5,5:1,1:65,68:0,0
14	25588290	.	A	C	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:2:0:0:37,39:0,0:0,0:0,0	74:3:0:0:66,70:5,5:0,0:0,0
14	25588291	.	A	T	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:1:0:0:37,38:0,0:0,0:0,0	73:3:0:0:66,69:0,1:0,0:4,4
14	26036482	.	T	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:2:0:0:0,0:0,0:1,1:28,30	83:0:0:0:0,0:7,7:0,0:76,78
14	26336021	rs193292538	T	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-314P15.2|lincRNA|NON_CODING|ENST00000546412|2|1);RSPOS=26336021;GMAF=0.1177;dbSNPBuildID=135;SSR=0;SAO=0;VP=050000000005000014000100;WGT=1;VC=SNV;ASP;KGPhase1;KGPROD	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	17:0:0:0:0,0:0,1:0,0:17,22	37:4:0:0:0,0:7,16:0,0:26,40
14	27233750	.	T	C	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||NOVA1-AS1|antisense|NON_CODING|ENST00000548328|1|1),INTRON(MODIFIER|||||NOVA1-AS1|antisense|NON_CODING|ENST00000552826|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	41:1:0:0:0,0:0,0:0,0:40,41	64:1:0:0:0,0:4,4:0,0:59,60
14	27348905	.	A	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-384J4.1|lincRNA|NON_CODING|ENST00000548170|3|1),INTRON(MODIFIER|||||RP11-384J4.2|lincRNA|NON_CODING|ENST00000550024|2|1),INTRON(MODIFIER|||||RP11-384J4.2|lincRNA|NON_CODING|ENST00000552303|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:0:0:0:31,31:0,0:0,0:0,0	83:0:0:0:78,78:5,5:0,0:0,0
14	27818793	.	A	C	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||CTD-3006G17.2|processed_transcript|NON_CODING|ENST00000553392|2|1),INTRON(MODIFIER|||||CTD-3006G17.2|processed_transcript|NON_CODING|ENST00000554904|2|1),INTRON(MODIFIER|||||CTD-3006G17.2|processed_transcript|NON_CODING|ENST00000555797|3|1),INTRON(MODIFIER|||||CTD-3006G17.2|processed_transcript|NON_CODING|ENST00000556890|2|1),INTRON(MODIFIER|||||RP11-384J4.2|lincRNA|NON_CODING|ENST00000553468|5|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:0:0:0:36,37:0,0:0,0:0,0	70:1:0:0:62,63:7,7:0,0:0,0
14	28316720	rs61972787	G	A	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||CTD-3006G17.2|processed_transcript|NON_CODING|ENST00000555797||1);RSPOS=28316720;dbSNPBuildID=129;SSR=0;SAO=0;VP=05010000000504010e000100;WGT=1;VC=SNV;SLO;ASP;VLD;GNO;KGPilot123;KGPROD;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:1:0:0:0,0:0,0:31,33:0,1	76:1:0:0:10,13:0,0:64,65:1,1
14	28316756	rs61972788	C	G	.	PASS	NT=ref;QSS=26;QSS_NT=26;SGT=CC->CG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||CTD-3006G17.2|processed_transcript|NON_CODING|ENST00000555797||1);RSPOS=28316756;dbSNPBuildID=129;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:0:0:0:0,0:35,38:0,1:0,0	72:1:0:0:0,0:58,59:13,15:0,0
14	29913051	.	C	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:1:0:0:0,0:29,30:0,0:0,0	73:0:0:0:4,4:69,69:0,0:0,0
14	29934364	.	G	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	44:0:0:0:0,0:0,0:43,43:1,1	75:1:0:0:0,0:0,0:63,64:11,12
14	29935493	.	A	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	27:0:0:0:27,27:0,0:0,0:0,0	71:0:0:0:64,64:0,0:0,0:7,7
14	30021257	.	T	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:0:0:0:0,0:0,0:0,0:29,29	91:1:0:0:0,0:9,9:0,0:81,82
14	31234227	.	T	A	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-159L20.2|antisense|NON_CODING|ENST00000554665|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:1:0:0:0,0:0,0:0,0:35,36	85:0:0:0:8,8:0,0:0,0:77,77
14	31727484	.	G	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||Y_RNA|misc_RNA|NON_CODING|ENST00000362421||1),INTRON(MODIFIER|||||RP11-596D21.1|antisense|NON_CODING|ENST00000551799|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:0:0:0:0,0:0,0:38,38:0,0	83:0:0:0:0,0:0,0:79,79:4,4
14	32062604	.	C	T	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||132|NUBPL|protein_coding|CODING|ENST00000551314|3|1),INTRON(MODIFIER||||166|NUBPL|protein_coding|CODING|ENST00000550649|3|1),INTRON(MODIFIER||||319|NUBPL|protein_coding|CODING|ENST00000281081|3|1),INTRON(MODIFIER|||||NUBPL|nonsense_mediated_decay|CODING|ENST00000547839|3|1),INTRON(MODIFIER|||||NUBPL|nonsense_mediated_decay|CODING|ENST00000549838|3|1),INTRON(MODIFIER|||||NUBPL|nonsense_mediated_decay|CODING|ENST00000552489|4|1),INTRON(MODIFIER|||||NUBPL|processed_transcript|CODING|ENST00000548937|3|1),INTRON(MODIFIER|||||NUBPL|processed_transcript|CODING|ENST00000550355|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	43:1:0:0:0,1:42,42:0,0:0,0	71:0:0:0:1,1:66,66:0,0:4,4
14	32684343	.	A	G	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:1:0:0:35,36:0,0:0,0:0,0	73:2:0:0:66,70:1,1:4,4:0,0
14	33907978	.	C	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||125|NPAS3|protein_coding|CODING|ENST00000546849|2|1),INTRON(MODIFIER||||153|NPAS3|protein_coding|CODING|ENST00000547068|2|1),INTRON(MODIFIER||||155|NPAS3|protein_coding|CODING|ENST00000551008|2|1),INTRON(MODIFIER||||257|NPAS3|protein_coding|CODING|ENST00000341321|4|1),INTRON(MODIFIER||||901|NPAS3|protein_coding|CODING|ENST00000346562|3|1),INTRON(MODIFIER||||903|NPAS3|protein_coding|CODING|ENST00000548645|3|1),INTRON(MODIFIER||||905|NPAS3|protein_coding|CODING|ENST00000551634|3|1),INTRON(MODIFIER||||920|NPAS3|protein_coding|CODING|ENST00000357798|4|1),INTRON(MODIFIER||||933|NPAS3|protein_coding|CODING|ENST00000356141|4|1),INTRON(MODIFIER||||938|NPAS3|protein_coding|CODING|ENST00000551492|4|1),INTRON(MODIFIER|||||NPAS3|retained_intron|CODING|ENST00000549770|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:0:0:0:0,0:32,32:0,0:0,0	68:0:0:0:4,4:63,63:0,0:1,1
14	38105206	rs145850423	G	A	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1886|TTC6|protein_coding|CODING|ENST00000553443|1|1),INTRON(MODIFIER|||||TTC6|nonsense_mediated_decay|CODING|ENST00000533625|2|1);RSPOS=38105206;dbSNPBuildID=134;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	25:0:0:0:0,0:0,0:25,25:0,0	62:2:2:0:11,12:0,0:49,50:0,0
14	40033512	.	G	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:0:0:0:0,0:0,0:30,30:0,0	76:2:0:0:0,0:0,0:63,64:11,12
14	40652459	.	A	G	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:1:0:0:32,33:0,0:0,0:0,0	75:1:0:0:69,70:0,0:5,5:0,0
14	43899671	.	T	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:0:0:0:0,0:0,0:0,0:32,32	75:1:0:0:4,4:0,0:0,0:70,71
14	44168708	.	T	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:1:0:0:0,0:0,0:0,0:32,34	93:1:0:0:0,0:6,11:0,0:86,88
14	45042530	.	G	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:1:0:0:0,0:0,0:31,32:0,1	54:0:0:0:6,6:0,0:48,54:0,0
14	45494002	.	A	G	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1720|FAM179B|protein_coding|CODING|ENST00000361577|7|1),INTRON(MODIFIER||||1773|FAM179B|protein_coding|CODING|ENST00000361462|7|1),INTRON(MODIFIER||||83|KLHL28|protein_coding|CODING|ENST00000556239|1|1),INTRON(MODIFIER||||995|FAM179B|protein_coding|CODING|ENST00000382233|6|1),INTRON(MODIFIER|||||FAM179B|nonsense_mediated_decay|CODING|ENST00000557423|7|1),INTRON(MODIFIER|||||FAM179B|retained_intron|CODING|ENST00000556105|1|1),INTRON(MODIFIER|||||KLHL28|processed_transcript|CODING|ENST00000553817|1|1),UPSTREAM(MODIFIER|||||FAM179B|retained_intron|CODING|ENST00000555586||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:1:0:0:36,37:0,0:0,0:0,0	66:0:0:0:62,62:0,0:4,4:0,0
14	46229123	.	A	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:0:0:0:30,30:0,0:0,0:0,0	70:0:0:0:66,66:0,0:4,4:0,0
14	48429391	.	A	G	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:0:0:0:33,33:0,0:0,0:0,0	71:1:0:0:66,67:0,0:4,4:0,0
14	48529647	.	G	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:0:0:0:0,0:0,0:34,34:0,0	75:2:0:0:0,0:0,0:69,71:4,4
14	49514027	.	G	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:0:0:0:0,0:0,0:30,30:0,0	76:0:0:0:0,0:1,1:71,71:4,4
14	49915405	.	T	C	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	41:0:0:0:0,0:0,0:0,0:41,41	81:0:0:0:0,0:8,8:0,0:73,73
14	50747734	.	T	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||211|L2HGDH|protein_coding|CODING|ENST00000555610||1),DOWNSTREAM(MODIFIER||||236|L2HGDH|protein_coding|CODING|ENST00000555423||1),INTRON(MODIFIER||||130|L2HGDH|protein_coding|CODING|ENST00000557131|3|1),INTRON(MODIFIER||||441|L2HGDH|protein_coding|CODING|ENST00000261699|5|1),INTRON(MODIFIER||||463|L2HGDH|protein_coding|CODING|ENST00000267436|5|1),INTRON(MODIFIER||||463|L2HGDH|protein_coding|CODING|ENST00000421284|5|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	28:1:0:0:0,0:0,0:0,0:27,28	72:0:0:0:0,0:0,0:7,7:65,65
14	53321456	.	G	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||633|FERMT2|protein_coding|CODING|ENST00000399304||1),DOWNSTREAM(MODIFIER||||640|FERMT2|protein_coding|CODING|ENST00000554152||1),DOWNSTREAM(MODIFIER||||680|FERMT2|protein_coding|CODING|ENST00000341590||1),DOWNSTREAM(MODIFIER||||680|FERMT2|protein_coding|CODING|ENST00000395631||1),DOWNSTREAM(MODIFIER||||687|FERMT2|protein_coding|CODING|ENST00000343279||1),DOWNSTREAM(MODIFIER||||687|FERMT2|protein_coding|CODING|ENST00000553373||1),DOWNSTREAM(MODIFIER|||||FERMT2|processed_transcript|CODING|ENST00000553768||1),DOWNSTREAM(MODIFIER|||||FERMT2|processed_transcript|CODING|ENST00000557255||1),DOWNSTREAM(MODIFIER|||||FERMT2|retained_intron|CODING|ENST00000555546||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:0:0:0:0,0:0,0:29,29:0,0	83:1:0:0:11,11:0,0:71,72:0,0
14	53640704	.	G	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||AL163953.3|lincRNA|NON_CODING|ENST00000454942|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:1:0:0:0,0:0,0:32,33:0,0	89:2:0:0:5,6:0,0:82,88:0,0
14	55359388	.	A	C	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||213|GCH1|protein_coding|CODING|ENST00000536224|1|1),INTRON(MODIFIER||||233|GCH1|protein_coding|CODING|ENST00000543643|1|1),INTRON(MODIFIER||||250|GCH1|protein_coding|CODING|ENST00000395514|1|1),INTRON(MODIFIER||||250|GCH1|protein_coding|CODING|ENST00000491895|1|1),INTRON(MODIFIER|||||GCH1|processed_transcript|CODING|ENST00000254299|1|1),INTRON(MODIFIER|||||GCH1|processed_transcript|CODING|ENST00000395521|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:1:0:0:34,37:0,0:0,0:0,0	95:1:0:0:82,83:12,12:0,0:0,0
14	55367177	.	A	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||213|GCH1|protein_coding|CODING|ENST00000536224|1|1),INTRON(MODIFIER||||233|GCH1|protein_coding|CODING|ENST00000543643|1|1),INTRON(MODIFIER||||250|GCH1|protein_coding|CODING|ENST00000395514|1|1),INTRON(MODIFIER||||250|GCH1|protein_coding|CODING|ENST00000491895|1|1),INTRON(MODIFIER|||||GCH1|processed_transcript|CODING|ENST00000254299|1|1),INTRON(MODIFIER|||||GCH1|processed_transcript|CODING|ENST00000395521|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:1:0:0:29,30:0,1:0,0:0,0	62:0:0:0:56,56:0,1:6,6:0,0
14	57800232	rs186152359	T	C	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=57800232;GMAF=0.0962;dbSNPBuildID=135;SSR=0;SAO=0;VP=050000000005000014000100;WGT=1;VC=SNV;ASP;KGPhase1;KGPROD	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:0:0:0:0,0:0,0:0,0:34,35	77:0:0:0:0,0:6,8:0,0:71,71
14	58031886	.	A	C	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||362|SLC35F4|protein_coding|CODING|ENST00000554729|7|1),INTRON(MODIFIER||||485|SLC35F4|protein_coding|CODING|ENST00000556826|7|1),INTRON(MODIFIER||||521|SLC35F4|protein_coding|CODING|ENST00000339762|7|1),INTRON(MODIFIER|||||SLC35F4|nonsense_mediated_decay|CODING|ENST00000557254|9|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:0:0:0:36,36:0,0:0,0:0,0	70:0:0:0:64,65:6,6:0,0:0,0
14	61140531	rs199593881	T	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=61140531;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:1:0:0:0,0:0,0:0,0:28,29	60:3:0:0:6,7:0,0:0,0:51,53
14	61140532	rs200817118	A	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=61140532;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	28:1:0:0:27,28:0,0:0,0:0,0	60:3:0:0:51,53:0,0:6,7:0,0
14	63591554	.	G	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||RP11-1112J20.1|processed_pseudogene|NON_CODING|ENST00000556806||1),INTRON(MODIFIER|||||RP11-1112J20.2|lincRNA|NON_CODING|ENST00000554921|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:0:0:0:0,0:1,1:35,35:0,0	72:2:0:0:0,0:0,0:65,67:5,5
14	64281486	.	A	G	.	PASS	NT=ref;QSS=24;QSS_NT=24;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	51:3:2:0:48,83:0,0:0,1:0,0	161:19:6:0:131,214:1,2:10,19:0,0
14	64838567	rs61984450	T	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||CTD-2555O16.1|lincRNA|NON_CODING|ENST00000556556|2|1),INTRON(MODIFIER|||||TEX21P|unitary_pseudogene|NON_CODING|ENST00000447107|1|1);RSPOS=64838567;dbSNPBuildID=129;SSR=0;SAO=0;VP=050000000001000002000100;WGT=1;VC=SNV;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:1:0:0:0,0:0,0:0,0:33,34	68:2:0:0:0,0:5,6:0,0:61,62
14	65002333	.	T	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||644|ZBTB1|protein_coding|CODING|ENST00000358738||1),DOWNSTREAM(MODIFIER|||||RP11-973N13.5|processed_pseudogene|NON_CODING|ENST00000555669||1),INTRON(MODIFIER|||||RP11-973N13.4|antisense|NON_CODING|ENST00000554918|1|1),UPSTREAM(MODIFIER||||639|HSPA2|protein_coding|CODING|ENST00000247207||1),UPSTREAM(MODIFIER||||639|HSPA2|protein_coding|CODING|ENST00000394709||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	28:0:0:0:0,0:0,0:1,1:27,27	72:0:0:0:0,0:6,6:0,0:66,67
14	65696520	.	C	T	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||CTD-2509G16.3|processed_pseudogene|NON_CODING|ENST00000555838||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	41:0:0:0:0,0:41,41:0,0:0,0	66:1:0:0:0,0:60,62:0,0:5,5
14	68858636	rs74983055	G	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||350|RAD51B|protein_coding|CODING|ENST00000471583|8|1),INTRON(MODIFIER||||366|RAD51B|protein_coding|CODING|ENST00000390683|7|1),INTRON(MODIFIER||||366|RAD51B|protein_coding|CODING|ENST00000488612|8|1),INTRON(MODIFIER||||384|RAD51B|protein_coding|CODING|ENST00000487270|8|1),INTRON(MODIFIER||||425|RAD51B|protein_coding|CODING|ENST00000487861|8|1),INTRON(MODIFIER|||||RAD51B|nonsense_mediated_decay|CODING|ENST00000479335|9|1),INTRON(MODIFIER|||||RAD51B|processed_transcript|CODING|ENST00000460526|2|1),INTRON(MODIFIER|||||RAD51B|processed_transcript|CODING|ENST00000468382|2|1),INTRON(MODIFIER|||||RAD51B|processed_transcript|CODING|ENST00000469165|2|1),INTRON(MODIFIER|||||RAD51B|processed_transcript|CODING|ENST00000478014|2|1),INTRON(MODIFIER|||||RAD51B|processed_transcript|CODING|ENST00000492236|3|1),INTRON(MODIFIER|||||RAD51B|processed_transcript|CODING|ENST00000497460|3|1),INTRON(MODIFIER|||||RAD51B|processed_transcript|CODING|ENST00000553595|4|1),INTRON(MODIFIER|||||RAD51B|processed_transcript|CODING|ENST00000554183|1|1),INTRON(MODIFIER|||||RAD51B|processed_transcript|CODING|ENST00000554244|2|1),INTRON(MODIFIER|||||RAD51B|processed_transcript|CODING|ENST00000557045|3|1);RSPOS=68858636;GMAF=0.0027;dbSNPBuildID=132;SSR=0;SAO=0;VP=050000080001040014000100;GENEINFO=RAD51B:5890;WGT=1;VC=SNV;INT;VLD;KGPhase1;KGPROD	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:0:0:0:0,0:0,0:30,30:0,0	84:0:0:0:7,7:0,0:77,77:0,0
14	68892696	rs8005713	C	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||350|RAD51B|protein_coding|CODING|ENST00000471583|9|1),INTRON(MODIFIER||||35|RAD51B|protein_coding|CODING|ENST00000554575|1|1),INTRON(MODIFIER||||366|RAD51B|protein_coding|CODING|ENST00000390683|8|1),INTRON(MODIFIER||||366|RAD51B|protein_coding|CODING|ENST00000488612|9|1),INTRON(MODIFIER||||384|RAD51B|protein_coding|CODING|ENST00000487270|9|1),INTRON(MODIFIER||||425|RAD51B|protein_coding|CODING|ENST00000487861|9|1),INTRON(MODIFIER|||||RAD51B|nonsense_mediated_decay|CODING|ENST00000479335|10|1),INTRON(MODIFIER|||||RAD51B|processed_transcript|CODING|ENST00000460526|3|1),INTRON(MODIFIER|||||RAD51B|processed_transcript|CODING|ENST00000468382|3|1),INTRON(MODIFIER|||||RAD51B|processed_transcript|CODING|ENST00000469165|3|1),INTRON(MODIFIER|||||RAD51B|processed_transcript|CODING|ENST00000478014|3|1),INTRON(MODIFIER|||||RAD51B|processed_transcript|CODING|ENST00000497460|4|1),INTRON(MODIFIER|||||RAD51B|processed_transcript|CODING|ENST00000553595|5|1),INTRON(MODIFIER|||||RAD51B|processed_transcript|CODING|ENST00000554183|2|1),INTRON(MODIFIER|||||RAD51B|processed_transcript|CODING|ENST00000554244|3|1),INTRON(MODIFIER|||||RAD51B|processed_transcript|CODING|ENST00000557045|4|1),UPSTREAM(MODIFIER|||||RP11-204K16.2|processed_pseudogene|NON_CODING|ENST00000557078||1);RSPOS=68892696;GMAF=0.3466;dbSNPBuildID=116;SSR=0;SAO=0;VP=050000080005000116000100;GENEINFO=RAD51B:5890;WGT=1;VC=SNV;INT;ASP;GNO;KGPhase1;KGPROD;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	18:1:0:0:0,0:17,21:0,0:0,0	36:2:0:0:0,0:28,31:0,0:6,8
14	71744517	.	G	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:0:0:0:0,0:0,0:30,30:0,0	97:0:0:0:0,0:1,1:88,88:8,8
14	72993521	.	C	T	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||346|RGS6|protein_coding|CODING|ENST00000554782|11|1),INTRON(MODIFIER||||453|RGS6|protein_coding|CODING|ENST00000343854|13|1),INTRON(MODIFIER||||460|RGS6|protein_coding|CODING|ENST00000355512|14|1),INTRON(MODIFIER||||472|RGS6|protein_coding|CODING|ENST00000402788|14|1),INTRON(MODIFIER||||472|RGS6|protein_coding|CODING|ENST00000553530|15|1),INTRON(MODIFIER||||472|RGS6|protein_coding|CODING|ENST00000555571|15|1),INTRON(MODIFIER||||475|RGS6|protein_coding|CODING|ENST00000406236|14|1),INTRON(MODIFIER||||477|RGS6|protein_coding|CODING|ENST00000407322|14|1),INTRON(MODIFIER||||480|RGS6|protein_coding|CODING|ENST00000404301|14|1),INTRON(MODIFIER||||490|RGS6|protein_coding|CODING|ENST00000553525|15|1),INTRON(MODIFIER||||490|RGS6|protein_coding|CODING|ENST00000556437|15|1),INTRON(MODIFIER||||539|RGS6|protein_coding|CODING|ENST00000434263|12|1),INTRON(MODIFIER|||||RGS6|nonsense_mediated_decay|CODING|ENST00000554474|15|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:0:0:0:0,0:38,38:0,0:0,0	80:0:0:0:0,0:75,75:0,0:5,5
14	73273989	.	A	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||195|DPF3|protein_coding|CODING|ENST00000540281|1|1),INTRON(MODIFIER||||357|DPF3|protein_coding|CODING|ENST00000541685|1|1),INTRON(MODIFIER||||367|DPF3|protein_coding|CODING|ENST00000546183|2|1),INTRON(MODIFIER||||378|DPF3|protein_coding|CODING|ENST00000556509|1|1),INTRON(MODIFIER|||||DPF3|nonsense_mediated_decay|CODING|ENST00000366353|1|1),INTRON(MODIFIER|||||DPF3|nonsense_mediated_decay|CODING|ENST00000381216|1|1),INTRON(MODIFIER|||||DPF3|processed_transcript|CODING|ENST00000555469|1|1),INTRON(MODIFIER|||||DPF3|processed_transcript|CODING|ENST00000556902|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:2:0:0:34,36:0,0:0,0:0,0	76:2:0:0:68,70:6,6:0,0:0,0
14	73291780	.	A	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||195|DPF3|protein_coding|CODING|ENST00000540281|1|1),INTRON(MODIFIER||||357|DPF3|protein_coding|CODING|ENST00000541685|1|1),INTRON(MODIFIER||||367|DPF3|protein_coding|CODING|ENST00000546183|2|1),INTRON(MODIFIER||||378|DPF3|protein_coding|CODING|ENST00000556509|1|1),INTRON(MODIFIER|||||DPF3|nonsense_mediated_decay|CODING|ENST00000366353|1|1),INTRON(MODIFIER|||||DPF3|nonsense_mediated_decay|CODING|ENST00000381216|1|1),INTRON(MODIFIER|||||DPF3|processed_transcript|CODING|ENST00000555469|1|1),INTRON(MODIFIER|||||DPF3|processed_transcript|CODING|ENST00000556902|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	27:0:0:0:27,27:0,0:0,0:0,0	60:1:0:0:51,52:0,0:8,8:0,0
14	74905170	.	G	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:2:0:0:0,0:0,0:32,34:0,0	75:0:0:0:0,0:1,1:68,68:6,6
14	75093329	.	G	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:0:0:0:0,0:0,0:30,30:0,0	81:0:0:0:7,7:0,0:73,74:1,1
14	77059555	.	G	T	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-187O7.3|lincRNA|NON_CODING|ENST00000554926|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	42:0:0:0:0,0:0,0:42,42:0,0	65:3:0:0:0,0:0,0:56,59:6,6
14	78461721	.	C	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:1:0:0:0,0:33,35:0,0:0,0	73:3:0:0:0,0:66,70:4,4:0,0
14	80340352	.	C	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:0:0:0:0,0:35,35:0,0:0,0	79:2:0:0:0,0:71,73:0,0:6,6
14	81138395	.	G	C	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1094|CEP128|protein_coding|CODING|ENST00000281129|18|1),INTRON(MODIFIER||||1094|CEP128|protein_coding|CODING|ENST00000555265|19|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:0:0:0:0,0:0,0:35,35:0,0	88:1:0:0:0,0:5,5:82,82:0,1
14	82382128	.	A	T	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=AA->AT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER|||||RP11-666E17.1|lincRNA|NON_CODING|ENST00000554814|3|1),UPSTREAM(MODIFIER|||||RP11-705B14.1|processed_pseudogene|NON_CODING|ENST00000554099||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	46:0:0:0:46,46:0,0:0,0:0,0	78:0:0:0:73,75:1,1:0,0:4,4
14	82747638	.	G	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:0:0:0:0,0:0,0:29,29:1,1	80:0:0:0:6,6:0,0:73,73:1,1
14	85021771	.	G	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	28:0:0:0:0,0:0,0:28,28:0,0	58:1:0:0:0,0:0,0:51,51:6,7
14	85277951	.	C	T	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	42:0:0:0:0,0:42,42:0,0:0,0	77:0:0:0:0,0:69,69:0,0:8,8
14	86002066	.	A	G	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||660|FLRT2|protein_coding|CODING|ENST00000330753|1|1),INTRON(MODIFIER||||660|FLRT2|protein_coding|CODING|ENST00000554746|1|1),INTRON(MODIFIER|||||FLRT2|processed_transcript|CODING|ENST00000556335|1|1),INTRON(MODIFIER|||||FLRT2|processed_transcript|CODING|ENST00000557419|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:1:0:0:37,39:0,0:0,0:0,0	81:1:0:0:73,74:0,0:7,8:0,0
14	86565459	rs147700334	C	A	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||CTD-2341M24.1|lincRNA|NON_CODING|ENST00000553668|2|1),INTRON(MODIFIER|||||CTD-2341M24.1|lincRNA|NON_CODING|ENST00000554647|1|1),INTRON(MODIFIER|||||CTD-2341M24.1|lincRNA|NON_CODING|ENST00000557195|4|1);RSPOS=86565459;GMAF=0.0069;dbSNPBuildID=134;SSR=0;SAO=0;VP=050000000005000014000100;WGT=1;VC=SNV;ASP;KGPhase1;KGPROD	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:0:0:0:0,0:37,38:0,0:0,0	83:0:0:0:6,8:77,77:0,0:0,0
14	88070841	.	G	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	24:1:0:0:0,0:0,0:23,24:0,0	71:0:0:0:0,0:0,0:61,61:10,10
14	89237213	.	T	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1931|EML5|protein_coding|CODING|ENST00000352093|1|1),INTRON(MODIFIER||||1969|EML5|protein_coding|CODING|ENST00000380664|1|1),INTRON(MODIFIER||||1977|EML5|protein_coding|CODING|ENST00000554922|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:0:0:0:0,0:0,0:0,0:32,32	71:0:0:0:0,0:7,7:0,0:64,64
14	91838901	.	T	G	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||2028|CCDC88C|protein_coding|CODING|ENST00000389857|3|1),INTRON(MODIFIER|||||CCDC88C|retained_intron|CODING|ENST00000553437|1|1),INTRON(MODIFIER|||||CCDC88C|retained_intron|CODING|ENST00000554872|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	28:2:0:0:1,1:0,0:0,0:25,27	59:10:0:0:0,0:0,0:12,17:37,42
14	92212920	rs111962024	A	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||72|CATSPERB|protein_coding|CODING|ENST00000553676|2|1),INTRON(MODIFIER||||73|CATSPERB|protein_coding|CODING|ENST00000556661|1|1),INTRON(MODIFIER||||99|CATSPERB|protein_coding|CODING|ENST00000554560|1|1);RSPOS=92212920;dbSNPBuildID=132;SSR=0;SAO=0;VP=050100000001000102000100;WGT=1;VC=SNV;SLO;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:0:0:0:30,31:0,0:0,0:0,0	73:1:0:0:67,68:0,0:5,5:0,0
14	93337906	.	A	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:0:0:0:33,34:0,0:0,0:0,0	84:2:0:0:77,78:5,6:0,0:0,0
14	93824876	.	C	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||2458|UNC79|protein_coding|CODING|ENST00000256339|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:0:0:0:0,0:32,32:0,0:0,0	80:1:0:0:0,0:69,70:0,0:10,10
14	94547722	.	G	C	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=EXON(MODIFIER|||||IFI27L1|processed_transcript|CODING|ENST00000553350|1|1),EXON(MODIFIER|||||IFI27L1|processed_transcript|CODING|ENST00000555065|1|1),EXON(MODIFIER|||||IFI27L1|retained_intron|CODING|ENST00000557600|1|1),UPSTREAM(MODIFIER||||39|IFI27L1|protein_coding|CODING|ENST00000554544||1),UPSTREAM(MODIFIER||||50|IFI27L1|protein_coding|CODING|ENST00000557066||1),UPSTREAM(MODIFIER||||50|IFI27L1|protein_coding|CODING|ENST00000557218||1),UPSTREAM(MODIFIER||||609|DDX24|protein_coding|CODING|ENST00000544005||1),UPSTREAM(MODIFIER||||816|DDX24|protein_coding|CODING|ENST00000555054||1),UPSTREAM(MODIFIER||||859|DDX24|protein_coding|CODING|ENST00000330836||1),UPSTREAM(MODIFIER|||||DDX24|retained_intron|CODING|ENST00000555324||1),UPSTREAM(MODIFIER|||||DDX24|retained_intron|CODING|ENST00000555762||1),UTR_5_PRIME(MODIFIER||||104|IFI27L1|protein_coding|CODING|ENST00000393115|1|1),UTR_5_PRIME(MODIFIER||||104|IFI27L1|protein_coding|CODING|ENST00000555523|1|1),UTR_5_PRIME(MODIFIER||||105|IFI27L1|protein_coding|CODING|ENST00000553664|1|1),UTR_5_PRIME(MODIFIER||||91|IFI27L1|protein_coding|CODING|ENST00000556381|1|1),UTR_5_PRIME(MODIFIER||||92|IFI27L1|protein_coding|CODING|ENST00000554166|1|1),UTR_5_PRIME(MODIFIER||||94|IFI27L1|protein_coding|CODING|ENST00000555341|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:0:0:0:0,0:0,0:40,40:0,0	65:1:0:0:0,0:4,4:60,61:0,0
14	95406684	rs60925318	C	T	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=95406684;dbSNPBuildID=129;SSR=0;SAO=0;VP=050000000001000002000100;WGT=1;VC=SNV;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:0:0:0:0,0:38,38:0,0:0,0	60:2:0:0:0,0:54,58:0,0:4,4
14	95406685	rs59218374	G	C	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=95406685;dbSNPBuildID=129;SSR=0;SAO=0;VP=050000000001000002000100;WGT=1;VC=SNV;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:0:0:0:0,0:0,0:39,39:0,0	60:2:0:0:0,0:4,4:54,58:0,0
14	96957777	.	T	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||723|AK7|protein_coding|CODING|ENST00000267584||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:0:0:0:0,0:0,0:0,0:30,30	69:0:0:0:0,0:0,0:7,7:62,62
14	97390362	.	T	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:1:0:0:0,0:1,1:1,1:32,33	81:6:0:0:0,0:13,16:1,2:61,64
14	97948880	.	T	C	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||CTD-2506J14.1|lincRNA|NON_CODING|ENST00000554862|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:0:0:0:0,0:0,0:0,0:37,37	89:0:0:0:0,0:12,12:0,0:77,77
14	98562184	.	G	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-61O1.1|lincRNA|NON_CODING|ENST00000555776|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:1:0:0:0,0:0,0:33,34:0,0	68:1:0:0:4,4:0,0:63,64:0,0
14	98582478	.	T	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-61O1.1|lincRNA|NON_CODING|ENST00000555776|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:1:0:0:0,0:0,0:0,0:32,34	66:1:0:0:5,5:0,0:0,0:60,61
14	99092894	.	A	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:1:0:0:28,30:0,0:0,0:0,0	75:1:0:0:68,69:6,6:0,0:0,0
14	100647787	.	C	T	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:0:0:0:0,0:37,39:0,0:0,0	75:1:0:0:0,0:69,76:0,0:5,5
14	100730352	.	A	G	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=EXON(MODIFIER|||||RP11-638I2.2|sense_intronic|NON_CODING|ENST00000555212|1|1),INTRON(MODIFIER||||414|YY1|protein_coding|CODING|ENST00000262238|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:1:0:0:33,34:0,0:0,0:0,0	85:3:0:0:72,75:2,2:8,8:0,0
14	101559894	.	G	A	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:1:0:0:0,0:0,0:35,36:0,0	70:1:0:0:6,6:0,0:63,64:0,0
14	101712162	.	A	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=AA->AT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	43:4:0:0:39,43:0,0:0,1:0,1	72:3:0:0:62,69:0,0:1,1:6,7
14	101712791	.	C	G	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	41:1:0:0:0,0:39,40:1,1:0,0	88:1:0:0:0,0:75,82:12,12:0,0
14	102038773	.	C	T	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	18:0:0:0:0,0:18,30:0,0:0,0	51:2:0:0:0,1:38,54:1,1:10,14
14	102038784	.	A	G	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=AA->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	19:0:0:0:19,30:0,0:0,1:0,0	57:2:0:0:40,56:1,4:14,18:0,0
14	102038785	.	G	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	19:0:0:0:0,1:0,0:19,30:0,0	57:2:0:0:11,13:0,1:44,64:0,0
14	102213202	.	G	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:0:0:0:0,0:0,0:29,29:0,0	86:0:0:0:0,0:0,0:79,80:7,8
14	102599533	rs181664142	C	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||854|HSP90AA1|protein_coding|CODING|ENST00000334701|1|1),INTRON(MODIFIER|||||HSP90AA1|nonsense_mediated_decay|CODING|ENST00000557234|1|1),INTRON(MODIFIER|||||HSP90AA1|processed_transcript|CODING|ENST00000558600|1|1);RSPOS=102599533;GMAF=0.0124;dbSNPBuildID=135;SSR=0;SAO=0;VP=050000080005000014000100;GENEINFO=HSP90AA1:3320;WGT=1;VC=SNV;INT;ASP;KGPhase1;KGPROD	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:0:0:0:0,0:29,29:0,0:0,0	66:1:0:0:0,0:57,59:8,8:0,0
14	102599542	.	A	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||854|HSP90AA1|protein_coding|CODING|ENST00000334701|1|1),INTRON(MODIFIER|||||HSP90AA1|nonsense_mediated_decay|CODING|ENST00000557234|1|1),INTRON(MODIFIER|||||HSP90AA1|processed_transcript|CODING|ENST00000558600|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:0:0:0:30,30:0,0:0,0:0,0	71:2:0:0:60,62:0,0:9,10:0,0
14	102752687	.	A	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||389|MOK|protein_coding|CODING|ENST00000524214|1|1),INTRON(MODIFIER||||418|MOK|protein_coding|CODING|ENST00000522874|1|1),INTRON(MODIFIER||||419|MOK|protein_coding|CODING|ENST00000361847|1|1),INTRON(MODIFIER||||95|MOK|protein_coding|CODING|ENST00000193029|1|1),INTRON(MODIFIER|||||MOK|nonsense_mediated_decay|CODING|ENST00000517537|1|1),INTRON(MODIFIER|||||MOK|nonsense_mediated_decay|CODING|ENST00000518399|1|1),INTRON(MODIFIER|||||MOK|nonsense_mediated_decay|CODING|ENST00000518482|1|1),INTRON(MODIFIER|||||MOK|nonsense_mediated_decay|CODING|ENST00000520238|1|1),INTRON(MODIFIER|||||MOK|nonsense_mediated_decay|CODING|ENST00000521388|1|1),INTRON(MODIFIER|||||MOK|nonsense_mediated_decay|CODING|ENST00000521766|1|1),INTRON(MODIFIER|||||MOK|nonsense_mediated_decay|CODING|ENST00000522093|1|1),INTRON(MODIFIER|||||MOK|nonsense_mediated_decay|CODING|ENST00000524207|1|1),INTRON(MODIFIER|||||MOK|nonsense_mediated_decay|CODING|ENST00000562292|1|1),INTRON(MODIFIER|||||MOK|processed_transcript|CODING|ENST00000521493|1|1),INTRON(MODIFIER|||||MOK|processed_transcript|CODING|ENST00000521966|1|1),INTRON(MODIFIER|||||MOK|processed_transcript|CODING|ENST00000523169|1|1),INTRON(MODIFIER|||||MOK|processed_transcript|CODING|ENST00000524019|1|1),INTRON(MODIFIER|||||MOK|retained_intron|CODING|ENST00000518045|1|1),INTRON(MODIFIER|||||MOK|retained_intron|CODING|ENST00000518686|1|1),INTRON(MODIFIER|||||MOK|retained_intron|CODING|ENST00000519569|1|1),INTRON(MODIFIER|||||MOK|retained_intron|CODING|ENST00000519877|1|1),UPSTREAM(MODIFIER|||||MOK|processed_transcript|CODING|ENST00000519265||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	27:1:0:0:26,27:0,0:0,0:0,0	70:6:0:0:57,65:1,1:6,6:0,0
14	103114179	.	T	C	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||482|RCOR1|protein_coding|CODING|ENST00000570597|2|1),INTRON(MODIFIER||||485|RCOR1|protein_coding|CODING|ENST00000262241|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	42:1:0:0:0,0:0,0:0,0:41,42	79:1:0:0:0,0:6,6:0,0:72,74
14	104276969	.	C	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1090|PPP1R13B|protein_coding|CODING|ENST00000202556|1|1),INTRON(MODIFIER||||142|PPP1R13B|protein_coding|CODING|ENST00000553739|1|1),INTRON(MODIFIER||||148|PPP1R13B|protein_coding|CODING|ENST00000555734|1|1),INTRON(MODIFIER|||||PPP1R13B|nonsense_mediated_decay|CODING|ENST00000557082|1|1),INTRON(MODIFIER|||||PPP1R13B|processed_transcript|CODING|ENST00000554106|1|1),INTRON(MODIFIER|||||PPP1R13B|processed_transcript|CODING|ENST00000556325|1|1),INTRON(MODIFIER|||||PPP1R13B|retained_intron|CODING|ENST00000554136|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:2:0:0:0,0:35,37:0,0:0,0	66:0:0:0:0,0:61,61:0,0:5,5
14	104423814	rs182780211	C	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1191|TDRD9|protein_coding|CODING|ENST00000339063|2|1),INTRON(MODIFIER||||1382|TDRD9|protein_coding|CODING|ENST00000409874|2|1),INTRON(MODIFIER|||||TDRD9|processed_transcript|CODING|ENST00000496087|3|1),INTRON(MODIFIER|||||TDRD9|processed_transcript|CODING|ENST00000554571|2|1);RSPOS=104423814;GMAF=0.0005;dbSNPBuildID=135;SSR=0;SAO=0;VP=050000080005000014000100;GENEINFO=TDRD9:122402;WGT=1;VC=SNV;INT;ASP;KGPhase1;KGPROD	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:1:0:0:0,1:34,34:0,0:0,0	70:0:0:0:0,0:66,66:0,0:4,4
14	104717186	rs71419817	A	G	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||54|C14orf144|protein_coding|CODING|ENST00000419115||1),INTRON(MODIFIER|||||RP11-260M19.2|lincRNA|NON_CODING|ENST00000553757|1|1),INTRON(MODIFIER|||||RP11-260M19.2|lincRNA|NON_CODING|ENST00000556528|1|1);RSPOS=104717186;dbSNPBuildID=130;SSR=0;SAO=0;VP=050100000001000102000100;WGT=1;VC=SNV;SLO;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:1:0:0:32,40:0,0:0,0:0,0	84:4:0:0:70,94:0,0:10,10:0,0
14	104897679	rs8008541	T	A	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=104897679;GMAF=0.082;dbSNPBuildID=116;SSR=0;SAO=0;VP=05010000000507051e000100;WGT=1;VC=SNV;SLO;ASP;VLD;G5A;G5;HD;GNO;KGPhase1;KGPilot123;KGPROD;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	41:1:0:0:0,0:0,0:0,0:40,41	61:1:0:0:4,4:0,0:1,2:55,56
14	105103510	.	C	T	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=CC->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	47:2:0:0:0,0:45,50:0,0:0,0	103:4:0:0:0,0:94,103:0,0:5,5
14	105119623	rs115359021	C	A	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||RP11-982M15.7|lincRNA|NON_CODING|ENST00000553433||1),DOWNSTREAM(MODIFIER|||||RP11-982M15.7|lincRNA|NON_CODING|ENST00000554954||1),INTERGENIC(MODIFIER||||||||||1);RSPOS=105119623;GMAF=0.1021;dbSNPBuildID=132;SSR=0;SAO=0;VP=050000000005040014000100;WGT=1;VC=SNV;ASP;VLD;KGPhase1;KGPROD	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:0:0:0:0,0:35,36:0,0:0,0	58:0:0:0:5,5:53,55:0,0:0,0
14	105119954	.	C	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=EXON(MODIFIER|||||RP11-982M15.7|lincRNA|NON_CODING|ENST00000553433|2|1),EXON(MODIFIER|||||RP11-982M15.7|lincRNA|NON_CODING|ENST00000554954|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	20:1:0:0:0,0:19,32:0,0:0,2	50:1:0:0:0,0:38,59:1,2:10,14
14	105245943	rs28379051	T	C	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||104|AKT1|protein_coding|CODING|ENST00000555380|2|1),INTRON(MODIFIER||||480|AKT1|protein_coding|CODING|ENST00000349310|4|1),INTRON(MODIFIER||||480|AKT1|protein_coding|CODING|ENST00000402615|3|1),INTRON(MODIFIER||||480|AKT1|protein_coding|CODING|ENST00000407796|3|1),INTRON(MODIFIER||||480|AKT1|protein_coding|CODING|ENST00000554581|2|1),INTRON(MODIFIER||||480|AKT1|protein_coding|CODING|ENST00000554848|3|1),INTRON(MODIFIER||||480|AKT1|protein_coding|CODING|ENST00000555528|3|1),INTRON(MODIFIER||||90|AKT1|protein_coding|CODING|ENST00000555926|4|1),UPSTREAM(MODIFIER||||418|AKT1|protein_coding|CODING|ENST00000544168||1),UPSTREAM(MODIFIER|||||AKT1|retained_intron|CODING|ENST00000553506||1),UPSTREAM(MODIFIER|||||AKT1|retained_intron|CODING|ENST00000554826||1),UPSTREAM(MODIFIER|||||AKT1|retained_intron|CODING|ENST00000556836||1),UPSTREAM(MODIFIER|||||AKT1|retained_intron|CODING|ENST00000557552||1);RSPOS=105245943;dbSNPBuildID=125;SSR=0;SAO=0;VP=050000080001000002000100;GENEINFO=AKT1:207;WGT=1;VC=SNV;INT;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	41:1:0:0:0,0:0,0:0,0:40,42	107:1:0:0:0,0:8,9:0,0:98,99
14	105272951	rs76159636	A	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||422|ZBTB42|protein_coding|CODING|ENST00000342537||1),DOWNSTREAM(MODIFIER||||422|ZBTB42|protein_coding|CODING|ENST00000555360||1),INTERGENIC(MODIFIER||||||||||1);RSPOS=105272951;dbSNPBuildID=131;SSR=0;SAO=0;VP=050000000005000102000100;WGT=1;VC=SNV;ASP;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	41:9:1:0:32,63:0,0:0,1:0,2	101:29:1:0:66,134:5,9:1,3:0,2
14	105416307	.	C	T	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||AHNAK2|retained_intron|CODING|ENST00000555544||1),EXON(MODIFIER|||||AHNAK2|retained_intron|CODING|ENST00000555122|6|1),INTRON(MODIFIER||||793|AHNAK2|protein_coding|CODING|ENST00000557457|1|1),SYNONYMOUS_CODING(LOW|SILENT|aaG/aaA|K1827|5795|AHNAK2|protein_coding|CODING|ENST00000333244|7|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:1:0:0:0,0:39,41:0,0:0,0	59:1:0:0:0,0:54,56:0,0:4,4
14	105416342	.	C	T	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||AHNAK2|retained_intron|CODING|ENST00000555544||1),EXON(MODIFIER|||||AHNAK2|retained_intron|CODING|ENST00000555122|6|1),INTRON(MODIFIER||||793|AHNAK2|protein_coding|CODING|ENST00000557457|1|1),NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|Gtg/Atg|V1816M|5795|AHNAK2|protein_coding|CODING|ENST00000333244|7|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:0:0:0:0,0:35,35:0,0:0,0	62:2:0:0:0,0:54,56:0,0:6,6
14	105416343	rs140200392	A	G	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||AHNAK2|retained_intron|CODING|ENST00000555544||1),EXON(MODIFIER|||||AHNAK2|retained_intron|CODING|ENST00000555122|6|1),INTRON(MODIFIER||||793|AHNAK2|protein_coding|CODING|ENST00000557457|1|1),SYNONYMOUS_CODING(LOW|SILENT|gaT/gaC|D1815|5795|AHNAK2|protein_coding|CODING|ENST00000333244|7|1);RSPOS=105416343;GMAF=0.0224;dbSNPBuildID=134;SSR=0;SAO=0;VP=050000000305000016000100;GENEINFO=AHNAK2:113146;WGT=1;VC=SNV;REF;SYN;ASP;KGPhase1;KGPROD;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:0:0:0:34,34:1,1:0,0:0,0	60:2:0:0:50,51:1,1:7,7:0,1
14	105418136	rs201387577	C	T	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||AHNAK2|retained_intron|CODING|ENST00000555544||1),EXON(MODIFIER|||||AHNAK2|retained_intron|CODING|ENST00000555122|6|1),INTRON(MODIFIER||||793|AHNAK2|protein_coding|CODING|ENST00000557457|1|1),NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|Gct/Act|A1218T|5795|AHNAK2|protein_coding|CODING|ENST00000333244|7|1);RSPOS=105418136;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000000a05000002000100;WGT=1;VC=SNV;NSM;REF;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	44:2:0:0:0,0:42,44:0,0:0,0	77:1:0:0:0,0:70,71:0,0:6,6
14	105475296	.	C	T	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||241|CDCA4|protein_coding|CODING|ENST00000336219||1),DOWNSTREAM(MODIFIER||||241|CDCA4|protein_coding|CODING|ENST00000392590||1),INTRON(MODIFIER|||||C14orf79|processed_transcript|CODING|ENST00000548178|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:1:0:0:0,0:37,38:0,0:0,0	62:2:0:0:0,0:56,58:0,1:4,4
14	105742308	rs60091253	T	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||208|BRF1|protein_coding|CODING|ENST00000548421|2|1),INTRON(MODIFIER||||562|BRF1|protein_coding|CODING|ENST00000327359|2|1),INTRON(MODIFIER||||584|BRF1|protein_coding|CODING|ENST00000440513|2|1),INTRON(MODIFIER||||62|BRF1|protein_coding|CODING|ENST00000550692|2|1),INTRON(MODIFIER||||650|BRF1|protein_coding|CODING|ENST00000379937|1|1),INTRON(MODIFIER||||677|BRF1|protein_coding|CODING|ENST00000546474|2|1);RSPOS=105742308;dbSNPBuildID=129;SSR=0;SAO=0;VP=050000080001040002000100;GENEINFO=BRF1:2972;WGT=1;VC=SNV;INT;VLD;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	19:1:0:0:1,2:0,0:0,0:17,21	50:3:0:0:0,0:9,10:2,2:36,41
14	105743898	rs2816634	T	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||208|BRF1|protein_coding|CODING|ENST00000548421|2|1),INTRON(MODIFIER||||562|BRF1|protein_coding|CODING|ENST00000327359|2|1),INTRON(MODIFIER||||584|BRF1|protein_coding|CODING|ENST00000440513|2|1),INTRON(MODIFIER||||62|BRF1|protein_coding|CODING|ENST00000550692|2|1),INTRON(MODIFIER||||650|BRF1|protein_coding|CODING|ENST00000379937|1|1),INTRON(MODIFIER||||677|BRF1|protein_coding|CODING|ENST00000546474|2|1);RSPOS=105743898;GMAF=0.206;dbSNPBuildID=100;SSR=0;SAO=0;VP=050000080001040016000100;GENEINFO=BRF1:2972;WGT=1;VC=SNV;INT;VLD;KGPhase1;KGPROD;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:1:0:0:0,0:0,0:1,1:27,31	72:5:0:0:0,0:8,8:0,0:59,69
14	105816358	rs111831235	G	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||PACS2|retained_intron|CODING|ENST00000548265||1),INTRON(MODIFIER||||814|PACS2|protein_coding|CODING|ENST00000430725|2|1),INTRON(MODIFIER||||859|PACS2|protein_coding|CODING|ENST00000547217|2|1),INTRON(MODIFIER||||85|PACS2|protein_coding|CODING|ENST00000546915|2|1),INTRON(MODIFIER||||889|PACS2|protein_coding|CODING|ENST00000325438|2|1),INTRON(MODIFIER||||893|PACS2|protein_coding|CODING|ENST00000447393|2|1),INTRON(MODIFIER||||904|PACS2|protein_coding|CODING|ENST00000458164|2|1);RSPOS=105816358;dbSNPBuildID=132;SSR=0;SAO=0;VP=050000080005040102000100;GENEINFO=PACS2:23241;WGT=1;VC=SNV;INT;ASP;VLD;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:2:0:0:0,0:0,0:30,32:0,0	73:7:0:0:7,11:3,4:56,59:0,0
14	105819782	.	T	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||PACS2|retained_intron|CODING|ENST00000548265||1),INTRON(MODIFIER||||814|PACS2|protein_coding|CODING|ENST00000430725|3|1),INTRON(MODIFIER||||859|PACS2|protein_coding|CODING|ENST00000547217|2|1),INTRON(MODIFIER||||85|PACS2|protein_coding|CODING|ENST00000546915|3|1),INTRON(MODIFIER||||889|PACS2|protein_coding|CODING|ENST00000325438|3|1),INTRON(MODIFIER||||893|PACS2|protein_coding|CODING|ENST00000447393|3|1),INTRON(MODIFIER||||904|PACS2|protein_coding|CODING|ENST00000458164|3|1),UPSTREAM(MODIFIER|||||PACS2|retained_intron|CODING|ENST00000552138||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:2:0:0:0,0:0,1:0,1:28,29	73:8:0:0:0,0:8,14:0,1:57,58
14	105925324	.	G	A	.	PASS	NT=ref;QSS=23;QSS_NT=23;SGT=GG->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=DOWNSTREAM(MODIFIER|||||MTA1|retained_intron|CODING|ENST00000494026||1),INTRON(MODIFIER||||227|MTA1|protein_coding|CODING|ENST00000498644|5|1),INTRON(MODIFIER||||511|MTA1|protein_coding|CODING|ENST00000434050|1|1),INTRON(MODIFIER||||698|MTA1|protein_coding|CODING|ENST00000405646|7|1),INTRON(MODIFIER||||703|MTA1|protein_coding|CODING|ENST00000406191|8|1),INTRON(MODIFIER||||715|MTA1|protein_coding|CODING|ENST00000331320|8|1),INTRON(MODIFIER|||||MTA1|nonsense_mediated_decay|CODING|ENST00000438610|8|1),INTRON(MODIFIER|||||MTA1|retained_intron|CODING|ENST00000481012|5|1),UPSTREAM(MODIFIER||||255|MTA1|protein_coding|CODING|ENST00000435036||1),UPSTREAM(MODIFIER||||45|MTA1|protein_coding|CODING|ENST00000550551||1),UPSTREAM(MODIFIER|||||MTA1|processed_transcript|CODING|ENST00000552860||1),UPSTREAM(MODIFIER|||||MTA1|retained_intron|CODING|ENST00000469140||1),UPSTREAM(MODIFIER|||||MTA1|retained_intron|CODING|ENST00000490198||1),UPSTREAM(MODIFIER|||||MTA1|retained_intron|CODING|ENST00000550808||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	58:0:0:0:0,0:0,0:58,61:0,0	70:0:0:0:4,4:1,1:65,72:0,0
14	106023750	rs7159608	G	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=106023750;dbSNPBuildID=116;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:1:0:0:0,1:0,0:29,29:0,0	55:4:0:0:8,13:0,0:42,46:1,2
14	106057601	.	T	C	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||AL928742.1|miRNA|NON_CODING|ENST00000581377||1),UPSTREAM(MODIFIER|||||AL928742.2|miRNA|NON_CODING|ENST00000578042||1),UPSTREAM(MODIFIER|||||IGHA2|IG_C_gene|NON_CODING|ENST00000390539||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	57:2:0:0:0,0:0,0:0,0:55,60	131:4:0:0:0,0:11,14:0,0:116,122
14	106086678	rs61985615	C	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||IGHG4|IG_C_gene|NON_CODING|ENST00000390543||1),INTERGENIC(MODIFIER||||||||||1);RSPOS=106086678;dbSNPBuildID=129;SSR=0;SAO=0;VP=050000000001000002000100;WGT=1;VC=SNV;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	59:0:0:0:0,0:59,61:0,0:0,0	104:2:0:0:0,0:94,98:0,0:8,10
14	106333896	rs12895899	C	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||IGHD7-27|IG_D_gene|NON_CODING|ENST00000439842||1),UPSTREAM(MODIFIER|||||IGHJ1P|IG_J_pseudogene|NON_CODING|ENST00000450690||1),UPSTREAM(MODIFIER|||||IGHJ1|IG_J_gene|NON_CODING|ENST00000390565||1),UPSTREAM(MODIFIER|||||IGHJ2P|IG_J_pseudogene|NON_CODING|ENST00000454480||1),UPSTREAM(MODIFIER|||||IGHJ2|IG_J_gene|NON_CODING|ENST00000390564||1),UPSTREAM(MODIFIER|||||IGHJ3P|IG_J_pseudogene|NON_CODING|ENST00000436826||1),UPSTREAM(MODIFIER|||||IGHJ3|IG_J_gene|NON_CODING|ENST00000463911||1),UPSTREAM(MODIFIER|||||IGHJ4|IG_J_gene|NON_CODING|ENST00000461719||1),UPSTREAM(MODIFIER|||||IGHJ5|IG_J_gene|NON_CODING|ENST00000488476||1),UPSTREAM(MODIFIER|||||IGHJ6|IG_J_gene|NON_CODING|ENST00000390560||1);RSPOS=106333896;dbSNPBuildID=121;SSR=0;SAO=0;VP=050000080001000002000100;GENEINFO=IGH@:3492;WGT=1;VC=SNV;INT;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:0:0:0:0,0:34,39:0,0:0,0	101:2:0:0:0,0:93,96:0,0:6,6
14	106587958	.	A	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=AA->AC;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||IGHV3-13|IG_V_gene|NON_CODING|ENST00000390602||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:1:0:0:29,30:0,1:0,0:0,0	65:1:0:0:59,60:5,9:0,0:0,0
14	106587959	.	G	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||IGHV3-13|IG_V_gene|NON_CODING|ENST00000390602||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:1:0:0:0,1:0,0:29,30:0,0	64:1:0:0:5,9:0,0:58,59:0,0
14	106587991	.	C	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||IGHV3-13|IG_V_gene|NON_CODING|ENST00000390602||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:1:0:0:0,0:28,29:0,1:0,0	69:3:0:0:0,0:61,62:5,10:0,0
14	106724159	.	A	G	.	PASS	NT=ref;QSS=38;QSS_NT=38;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||IGHV3-23|IG_V_gene|NON_CODING|ENST00000390609||1),INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||IGHVII-22-1|IG_V_pseudogene|NON_CODING|ENST00000517888||1),UPSTREAM(MODIFIER|||||IGHVIII-22-2|IG_V_pseudogene|NON_CODING|ENST00000518246||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	96:3:0:0:93,101:0,0:0,0:0,0	231:3:0:0:220,234:0,0:8,8:0,0
14	106775345	rs74220831	C	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||IGHV7-27|IG_V_pseudogene|NON_CODING|ENST00000522512||1),UPSTREAM(MODIFIER|||||IGHVII-26-2|IG_V_pseudogene|NON_CODING|ENST00000518751||1);RSPOS=106775345;dbSNPBuildID=130;SSR=0;SAO=0;VP=05000000000500000e000100;WGT=1;VC=SNV;ASP;KGPilot123;KGPROD;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:0:0:0:0,0:34,34:0,0:0,0	62:0:0:0:0,0:57,57:0,0:5,6
14	106775379	rs201570873	G	C	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||IGHV7-27|IG_V_pseudogene|NON_CODING|ENST00000522512||1),UPSTREAM(MODIFIER|||||IGHVII-26-2|IG_V_pseudogene|NON_CODING|ENST00000518751||1);RSPOS=106775379;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:2:0:0:0,0:0,0:38,40:0,0	70:0:0:0:0,0:6,7:64,64:0,0
14	106783544	.	T	A	.	PASS	NT=ref;QSS=23;QSS_NT=23;SGT=TT->AT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=DOWNSTREAM(MODIFIER|||||IGHV3-29|IG_V_pseudogene|NON_CODING|ENST00000520707||1),DOWNSTREAM(MODIFIER|||||IGHVII-28-1|IG_V_pseudogene|NON_CODING|ENST00000519887||1),INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||IGHV4-28|IG_V_gene|NON_CODING|ENST00000390612||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:3:0:0:0,4:1,2:0,0:35,37	101:0:0:0:16,35:0,0:1,1:84,88
14	106795350	.	T	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||IGHV3-30-2|IG_V_pseudogene|NON_CODING|ENST00000517460||1),DOWNSTREAM(MODIFIER|||||IGHVII-30-1|IG_V_pseudogene|NON_CODING|ENST00000522218||1),INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||IGHV3-30|IG_V_gene|NON_CODING|ENST00000390613||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:0:0:0:0,0:0,0:0,0:31,31	64:0:0:0:0,0:0,0:6,6:58,62
14	107148149	.	C	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||IGHVIII-67-3|IG_V_pseudogene|NON_CODING|ENST00000517650||1),DOWNSTREAM(MODIFIER|||||IGHVIII-67-4|IG_V_pseudogene|NON_CODING|ENST00000524281||1),INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||IGHVIII-67-2|IG_V_pseudogene|NON_CODING|ENST00000519849||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:2:0:0:0,0:28,30:0,0:0,0	84:1:0:0:0,0:76,78:6,6:1,1
14	107168268	rs57271294	G	A	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||IGHV1-69|IG_V_gene|NON_CODING|ENST00000390633||1),INTERGENIC(MODIFIER||||||||||1);RSPOS=107168268;dbSNPBuildID=129;SSR=0;SAO=0;VP=05000000000104010e000100;WGT=1;VC=SNV;VLD;GNO;KGPilot123;KGPROD;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:0:0:0:0,0:0,0:33,33:0,0	61:3:0:0:7,10:1,1:50,50:0,0
15	20027205	.	C	T	.	PASS	NT=ref;QSS=35;QSS_NT=35;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	73:1:0:0:0,0:72,74:0,0:0,0	133:0:0:0:0,0:124,125:0,0:9,10
15	20027206	.	A	G	.	PASS	NT=ref;QSS=35;QSS_NT=35;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	73:1:0:0:72,74:0,0:0,0:0,0	133:0:0:0:123,126:0,0:9,9:1,1
15	20027227	.	A	T	.	PASS	NT=ref;QSS=33;QSS_NT=33;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	68:0:0:0:68,71:0,0:0,0:0,0	126:1:0:0:116,118:0,0:0,1:9,10
15	20033824	.	C	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:2:0:0:0,0:29,31:0,0:0,0	75:1:0:0:0,0:68,69:6,6:0,0
15	20033842	rs78365784	A	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=20033842;dbSNPBuildID=131;SSR=0;SAO=0;VP=050000000001000102000100;WGT=1;VC=SNV;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:1:0:0:30,31:0,0:0,0:0,0	83:0:0:0:76,76:1,1:6,6:0,0
15	20033898	.	G	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:0:0:0:0,0:0,0:32,33:0,0	84:0:0:0:0,0:6,6:78,81:0,0
15	20033907	.	G	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:0:0:0:0,0:0,0:32,33:1,1	83:1:0:0:6,6:0,0:76,79:0,0
15	20035418	rs113223903	G	C	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->CG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=20035418;dbSNPBuildID=132;SSR=0;SAO=0;VP=050000000001000102000100;WGT=1;VC=SNV;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	61:0:0:0:0,0:0,1:61,64:0,0	158:2:0:0:0,0:7,7:148,153:1,1
15	20038997	.	G	C	.	PASS	NT=ref;QSS=24;QSS_NT=24;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	62:5:0:0:0,1:0,1:57,76:0,0	124:25:0:0:0,0:5,10:94,148:0,0
15	20082772	.	G	A	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||RP11-79C23.1|unprocessed_pseudogene|NON_CODING|ENST00000400208||1),UPSTREAM(MODIFIER|||||RP11-79C23.1|unprocessed_pseudogene|NON_CODING|ENST00000400231||1),UPSTREAM(MODIFIER|||||RP11-79C23.1|unprocessed_pseudogene|NON_CODING|ENST00000413399||1),UPSTREAM(MODIFIER|||||RP11-79C23.1|unprocessed_pseudogene|NON_CODING|ENST00000524329||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:0:0:0:0,0:0,0:34,34:0,0	75:0:0:0:10,13:0,0:65,66:0,0
15	20105364	.	T	G	.	PASS	NT=ref;QSS=24;QSS_NT=24;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||RP11-173D3.3|processed_pseudogene|NON_CODING|ENST00000553634||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	48:0:0:0:0,0:0,0:0,1:48,54	129:0:0:0:0,0:0,0:8,10:121,130
15	20108031	rs115531860	T	A	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||RP11-173D3.3|processed_pseudogene|NON_CODING|ENST00000553634||1),INTERGENIC(MODIFIER||||||||||1);RSPOS=20108031;dbSNPBuildID=134;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	57:14:3:0:0,0:0,0:0,0:43,63	129:40:3:0:6,13:0,1:1,2:82,132
15	20108213	.	G	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->GT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=DOWNSTREAM(MODIFIER|||||RP11-173D3.3|processed_pseudogene|NON_CODING|ENST00000553634||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	71:8:0:0:0,0:0,0:63,82:0,1	138:17:0:0:0,0:0,0:113,162:8,10
15	20114788	rs79194144	T	C	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=TT->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=20114788;dbSNPBuildID=131;SSR=0;SAO=0;VP=050000000005040102000100;WGT=1;VC=SNV;ASP;VLD;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	53:3:0:0:0,0:0,2:0,0:50,59	114:0:0:0:0,0:16,20:0,0:98,108
15	20122111	.	A	G	.	PASS	NT=ref;QSS=24;QSS_NT=24;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	68:4:0:0:63,83:0,0:1,2:0,0	192:9:0:0:172,238:0,1:11,12:0,0
15	20125329	.	T	A	.	PASS	NT=ref;QSS=32;QSS_NT=32;SGT=TT->AT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	76:3:0:0:0,1:0,0:0,0:73,87	191:2:0:0:9,10:1,1:1,1:178,208
15	20132515	.	A	G	.	PASS	NT=ref;QSS=28;QSS_NT=28;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	57:0:0:0:57,87:0,0:0,0:0,0	146:1:0:0:136,198:0,0:9,13:0,0
15	20132564	.	A	T	.	PASS	NT=ref;QSS=25;QSS_NT=25;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	49:0:0:0:49,82:0,0:0,0:0,0	137:2:0:0:126,190:0,0:0,0:9,13
15	20243453	rs202187798	C	T	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=20243453;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:2:0:0:0,0:36,38:0,0:0,0	67:3:0:0:0,0:55,59:0,0:9,13
15	20307770	.	C	G	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	62:7:0:0:0,0:53,108:1,4:1,1	107:9:0:0:0,1:90,186:8,12:0,3
15	20309077	.	C	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:7:0:0:0,0:29,47:0,1:0,1	85:8:1:0:0,0:68,96:0,0:9,15
15	20310871	.	G	A	.	PASS	NT=ref;QSS=31;QSS_NT=31;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	89:3:0:0:0,0:0,0:86,110:0,0	160:20:0:0:7,12:0,1:129,200:4,8
15	20512553	.	C	A	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->AC;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	61:4:0:0:0,2:57,62:0,0:0,0	170:7:0:0:9,13:154,164:0,0:0,0
15	20512572	.	T	G	.	PASS	NT=ref;QSS=28;QSS_NT=28;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	72:2:0:0:0,0:0,0:1,2:69,73	176:5:0:0:0,0:0,0:10,15:161,168
15	20541677	.	G	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:2:0:0:0,0:0,0:34,39:0,0	80:2:0:0:4,5:0,0:74,86:0,0
15	21240178	.	A	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	16:0:0:0:16,17:0,0:0,0:0,0	50:1:0:0:38,42:10,15:1,1:0,0
15	21270389	rs183895183	G	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=21270389;GMAF=0.0668;dbSNPBuildID=135;SSR=0;SAO=0;VP=050000000005000016000100;WGT=1;VC=SNV;ASP;KGPhase1;KGPROD;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:1:2:0:0,1:0,0:30,32:0,0	68:4:4:0:7,10:0,0:57,62:0,0
15	21270390	rs189973354	G	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=21270390;GMAF=0.0655;dbSNPBuildID=135;SSR=0;SAO=0;VP=050000000005000016000100;WGT=1;VC=SNV;ASP;KGPhase1;KGPROD;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:1:2:0:0,0:0,0:30,33:0,0	68:4:4:0:7,13:0,0:57,59:0,0
15	21360190	.	A	G	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:1:1:0:32,40:0,1:0,0:0,0	47:1:0:0:41,58:0,0:5,5:0,0
15	22825076	.	G	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:1:0:0:0,1:1,1:31,40:0,0	66:4:0:0:7,9:0,1:55,70:0,1
15	22831350	.	A	G	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER||||1024|TUBGCP5|protein_coding|CODING|ENST00000283645||1),UPSTREAM(MODIFIER||||1024|TUBGCP5|protein_coding|CODING|ENST00000453949||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	27:4:0:0:22,32:0,0:0,0:1,3	44:5:0:0:30,37:2,2:7,11:0,1
15	23103198	.	A	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=DOWNSTREAM(MODIFIER|||||RP11-566K19.5|processed_transcript|NON_CODING|ENST00000559740||1),DOWNSTREAM(MODIFIER|||||RP11-566K19.5|processed_transcript|NON_CODING|ENST00000559762||1),DOWNSTREAM(MODIFIER|||||RP11-566K19.5|retained_intron|NON_CODING|ENST00000560434||1),EXON(MODIFIER|||||RP11-566K19.5|transcribed_unprocessed_pseudogene|NON_CODING|ENST00000558417|7|1),INTRON(MODIFIER|||||RP11-566K19.6|processed_transcript|NON_CODING|ENST00000557922|3|1),UPSTREAM(MODIFIER||||254|NIPA1|protein_coding|CODING|ENST00000437912||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	18:1:0:0:17,19:0,0:0,1:0,0	41:9:0:0:25,34:0,0:7,10:0,0
15	23192181	.	A	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||WHAMMP3|processed_transcript|NON_CODING|ENST00000400153|8|1),INTRON(MODIFIER|||||WHAMMP3|transcribed_unprocessed_pseudogene|NON_CODING|ENST00000340286|6|1),UPSTREAM(MODIFIER|||||WHAMMP3|retained_intron|NON_CODING|ENST00000558484||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	28:0:0:0:28,28:0,0:0,0:0,0	64:1:0:0:57,59:0,0:0,0:6,6
15	23221544	.	G	A	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:0:0:0:0,0:0,0:37,37:0,0	62:0:0:0:6,6:0,0:55,55:1,1
15	24181281	rs184172270	C	T	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-484P15.1|lincRNA|NON_CODING|ENST00000562975|5|1);RSPOS=24181281;GMAF=0.0023;dbSNPBuildID=135;SSR=0;SAO=0;VP=050000000005000014000100;WGT=1;VC=SNV;ASP;KGPhase1;KGPROD	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:0:0:0:0,0:38,38:0,0:0,0	82:2:0:0:0,0:75,76:0,0:5,6
15	24450033	.	T	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||RP11-580I1.1|lincRNA|NON_CODING|ENST00000568541||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:0:0:0:0,0:0,0:0,0:29,29	83:0:0:0:0,0:0,0:5,5:78,78
15	24569441	rs74802606	T	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=24569441;dbSNPBuildID=131;SSR=0;SAO=0;VP=050100000005040102000100;WGT=1;VC=SNV;SLO;ASP;VLD;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:2:0:0:0,0:0,0:0,0:35,37	78:0:0:0:0,0:0,0:7,7:71,71
15	24843245	.	T	C	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||PWRN1|lincRNA|NON_CODING|ENST00000564898|2|1),INTRON(MODIFIER|||||PWRN1|lincRNA|NON_CODING|ENST00000568019|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:1:0:0:0,0:0,0:0,0:37,38	71:0:0:0:0,0:4,4:0,0:67,67
15	25138341	.	T	C	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=TT->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER||||240|SNRPN|protein_coding|CODING|ENST00000400097|2|1),INTRON(MODIFIER||||240|SNRPN|protein_coding|CODING|ENST00000400098|2|1),INTRON(MODIFIER||||240|SNRPN|protein_coding|CODING|ENST00000400100|3|1),INTRON(MODIFIER|||||SNRPN|processed_transcript|CODING|ENST00000553597|2|1),UPSTREAM(MODIFIER|||||snoU13|snoRNA|NON_CODING|ENST00000459185||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	28:0:0:0:0,0:0,0:0,0:28,28	71:1:0:0:0,1:11,11:0,0:59,60
15	25138342	.	G	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||240|SNRPN|protein_coding|CODING|ENST00000400097|2|1),INTRON(MODIFIER||||240|SNRPN|protein_coding|CODING|ENST00000400098|2|1),INTRON(MODIFIER||||240|SNRPN|protein_coding|CODING|ENST00000400100|3|1),INTRON(MODIFIER|||||SNRPN|processed_transcript|CODING|ENST00000553597|2|1),UPSTREAM(MODIFIER|||||snoU13|snoRNA|NON_CODING|ENST00000459185||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	28:0:0:0:0,0:0,0:28,28:0,0	70:2:0:0:6,6:0,0:62,65:0,0
15	25138347	.	T	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||240|SNRPN|protein_coding|CODING|ENST00000400097|2|1),INTRON(MODIFIER||||240|SNRPN|protein_coding|CODING|ENST00000400098|2|1),INTRON(MODIFIER||||240|SNRPN|protein_coding|CODING|ENST00000400100|3|1),INTRON(MODIFIER|||||SNRPN|processed_transcript|CODING|ENST00000553597|2|1),UPSTREAM(MODIFIER|||||snoU13|snoRNA|NON_CODING|ENST00000459185||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:0:0:0:0,0:0,0:0,0:29,29	69:1:0:0:6,7:1,1:0,0:61,62
15	25942020	.	G	T	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1499|ATP10A|protein_coding|CODING|ENST00000356865|13|1),INTRON(MODIFIER|||||ATP10A|nonsense_mediated_decay|CODING|ENST00000555815|14|1),UPSTREAM(MODIFIER||||138|ATP10A|protein_coding|CODING|ENST00000555756||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:0:0:0:0,0:0,0:37,38:0,0	67:0:0:0:0,0:0,0:60,60:7,7
15	26082738	.	G	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||ATP10A|nonsense_mediated_decay|CODING|ENST00000389967||1),DOWNSTREAM(MODIFIER|||||ATP10A|processed_transcript|CODING|ENST00000553577||1),INTRON(MODIFIER||||1499|ATP10A|protein_coding|CODING|ENST00000356865|1|1),INTRON(MODIFIER|||||ATP10A|nonsense_mediated_decay|CODING|ENST00000555815|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:1:0:0:0,0:0,0:32,33:0,0	84:0:0:0:5,5:0,0:79,79:0,0
15	26697085	.	T	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:1:0:0:0,0:0,0:0,0:28,29	68:0:0:0:0,0:9,9:0,0:59,59
15	27088082	.	C	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||529|GABRB3|protein_coding|CODING|ENST00000541819|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:4:0:0:0,1:35,41:0,0:0,0	77:2:0:0:0,0:69,77:0,0:6,6
15	27438192	.	G	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||253|GABRG3|protein_coding|CODING|ENST00000555083|3|1),INTRON(MODIFIER||||467|GABRG3|protein_coding|CODING|ENST00000333743|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:1:0:0:0,0:0,0:31,32:0,0	73:0:0:0:4,4:0,0:68,68:1,1
15	28003072	.	A	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||814|OCA2|protein_coding|CODING|ENST00000353809|22|1),INTRON(MODIFIER||||838|OCA2|protein_coding|CODING|ENST00000354638|23|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:1:0:0:28,28:0,1:0,0:0,0	50:1:0:0:44,45:0,0:5,5:0,0
15	29088292	.	T	C	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||GOLGA6L7P|processed_transcript|NON_CODING|ENST00000569815||1),DOWNSTREAM(MODIFIER|||||RP11-578F21.12|processed_transcript|NON_CODING|ENST00000563144||1),EXON(MODIFIER|||||GOLGA6L7P|transcribed_unprocessed_pseudogene|NON_CODING|ENST00000567390|8|1),INTRON(MODIFIER|||||RP11-578F21.12|processed_transcript|NON_CODING|ENST00000564604|3|1),INTRON(MODIFIER|||||RP11-578F21.12|processed_transcript|NON_CODING|ENST00000566178|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	56:4:0:0:0,0:0,0:0,1:52,86	139:6:0:0:0,0:8,14:0,3:125,162
15	31305276	.	T	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1389|TRPM1|protein_coding|CODING|ENST00000558445|26|1),INTRON(MODIFIER||||1527|TRPM1|protein_coding|CODING|ENST00000558768|24|1),INTRON(MODIFIER||||1603|TRPM1|protein_coding|CODING|ENST00000397795|26|1),INTRON(MODIFIER||||1625|TRPM1|protein_coding|CODING|ENST00000256552|27|1),INTRON(MODIFIER||||1642|TRPM1|protein_coding|CODING|ENST00000542188|26|1),INTRON(MODIFIER||||504|TRPM1|protein_coding|CODING|ENST00000559177|7|1),INTRON(MODIFIER|||||RP11-348B17.1|antisense|NON_CODING|ENST00000561299|1|1),INTRON(MODIFIER|||||TRPM1|nonsense_mediated_decay|CODING|ENST00000560801|23|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:1:0:0:0,0:0,0:0,1:28,29	75:8:0:0:0,0:4,4:0,0:63,71
15	31455322	.	A	G	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER||||1389|TRPM1|protein_coding|CODING|ENST00000558445||1),UPSTREAM(MODIFIER||||1642|TRPM1|protein_coding|CODING|ENST00000542188||1),UPSTREAM(MODIFIER||||504|TRPM1|protein_coding|CODING|ENST00000559177||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	41:2:0:0:37,38:1,2:1,1:0,0	83:2:0:0:63,63:1,1:17,19:0,0
15	31890443	.	G	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||109|OTUD7A|protein_coding|CODING|ENST00000560598|4|1),INTRON(MODIFIER||||926|OTUD7A|protein_coding|CODING|ENST00000307050|1|1),INTRON(MODIFIER||||933|OTUD7A|protein_coding|CODING|ENST00000382902|1|1),INTRON(MODIFIER|||||OTUD7A|nonsense_mediated_decay|CODING|ENST00000560536|6|1),INTRON(MODIFIER|||||OTUD7A|retained_intron|CODING|ENST00000558371|4|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:1:0:0:0,0:0,0:32,33:0,0	74:0:0:0:0,0:4,4:70,71:0,0
15	31925025	rs150149809	G	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||109|OTUD7A|protein_coding|CODING|ENST00000560598|4|1),INTRON(MODIFIER||||926|OTUD7A|protein_coding|CODING|ENST00000307050|1|1),INTRON(MODIFIER||||933|OTUD7A|protein_coding|CODING|ENST00000382902|1|1),INTRON(MODIFIER|||||OTUD7A|nonsense_mediated_decay|CODING|ENST00000560536|6|1),INTRON(MODIFIER|||||OTUD7A|retained_intron|CODING|ENST00000558371|4|1);RSPOS=31925025;dbSNPBuildID=134;SSR=0;SAO=0;VP=050000080005000002000100;GENEINFO=OTUD7A:161725;WGT=1;VC=SNV;INT;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:1:0:0:0,0:0,0:33,34:0,0	91:0:0:0:6,15:0,0:85,86:0,0
15	33086702	.	T	C	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1196|FMN1|protein_coding|CODING|ENST00000334528|15|1),INTRON(MODIFIER||||1321|FMN1|protein_coding|CODING|ENST00000561249|14|1),INTRON(MODIFIER||||1419|FMN1|protein_coding|CODING|ENST00000559047|16|1),INTRON(MODIFIER|||||FMN1|processed_transcript|CODING|ENST00000558882|4|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:1:0:0:0,0:0,0:0,0:35,36	85:1:0:0:1,1:5,5:0,0:78,79
15	36995500	.	A	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||105|C15orf41|protein_coding|CODING|ENST00000562489|1|1),INTRON(MODIFIER||||121|C15orf41|protein_coding|CODING|ENST00000566807|7|1),INTRON(MODIFIER||||183|C15orf41|protein_coding|CODING|ENST00000338183|8|1),INTRON(MODIFIER||||183|C15orf41|protein_coding|CODING|ENST00000562877|8|1),INTRON(MODIFIER||||183|C15orf41|protein_coding|CODING|ENST00000567389|9|1),INTRON(MODIFIER||||281|C15orf41|protein_coding|CODING|ENST00000437989|8|1),INTRON(MODIFIER||||281|C15orf41|protein_coding|CODING|ENST00000566621|8|1),INTRON(MODIFIER||||287|C15orf41|protein_coding|CODING|ENST00000569302|8|1),INTRON(MODIFIER|||||C15orf41|processed_transcript|CODING|ENST00000565792|2|1),INTRON(MODIFIER|||||C15orf41|processed_transcript|CODING|ENST00000566932|1|1),INTRON(MODIFIER|||||C15orf41|processed_transcript|CODING|ENST00000570265|8|1),UPSTREAM(MODIFIER|||||C15orf41|retained_intron|CODING|ENST00000566677||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	17:0:0:0:17,19:0,0:0,0:0,0	33:0:0:0:27,31:0,0:0,0:6,7
15	37831381	.	T	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:0:0:0:0,0:0,0:0,0:31,31	73:0:0:0:8,8:0,0:0,0:65,65
15	38439310	.	C	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-346D14.1|lincRNA|NON_CODING|ENST00000561161|2|1),INTRON(MODIFIER|||||RP11-346D14.1|lincRNA|NON_CODING|ENST00000561320|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:0:0:0:0,0:34,36:0,0:0,0	70:0:0:0:0,0:64,64:0,0:6,6
15	38835849	.	C	T	.	PASS	NT=ref;QSS=32;QSS_NT=32;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||Y_RNA|misc_RNA|NON_CODING|ENST00000364639||1),INTRON(MODIFIER||||31|RASGRP1|protein_coding|CODING|ENST00000560929|2|1),INTRON(MODIFIER||||546|RASGRP1|protein_coding|CODING|ENST00000558164|2|1),INTRON(MODIFIER||||56|RASGRP1|protein_coding|CODING|ENST00000561117|2|1),INTRON(MODIFIER||||597|RASGRP1|protein_coding|CODING|ENST00000559830|2|1),INTRON(MODIFIER||||749|RASGRP1|protein_coding|CODING|ENST00000539159|2|1),INTRON(MODIFIER||||762|RASGRP1|protein_coding|CODING|ENST00000450598|2|1),INTRON(MODIFIER||||797|RASGRP1|protein_coding|CODING|ENST00000310803|2|1),INTRON(MODIFIER||||811|RASGRP1|protein_coding|CODING|ENST00000558432|1|1),INTRON(MODIFIER||||848|RASGRP1|protein_coding|CODING|ENST00000561180|2|1),INTRON(MODIFIER||||95|RASGRP1|protein_coding|CODING|ENST00000558418|2|1),INTRON(MODIFIER|||||RASGRP1|nonsense_mediated_decay|CODING|ENST00000414708|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:0:0:0:0,0:31,31:0,0:0,0	58:1:0:0:0,0:43,44:0,0:14,15
15	41053799	.	G	A	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER||||44|GCHFR|protein_coding|CODING|ENST00000561160||1),UPSTREAM(MODIFIER||||67|GCHFR|protein_coding|CODING|ENST00000558467||1),UPSTREAM(MODIFIER||||67|GCHFR|protein_coding|CODING|ENST00000559932||1),UPSTREAM(MODIFIER||||73|GCHFR|protein_coding|CODING|ENST00000559445||1),UPSTREAM(MODIFIER||||84|GCHFR|protein_coding|CODING|ENST00000260447||1),UPSTREAM(MODIFIER|||||GCHFR|processed_transcript|CODING|ENST00000558670||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:0:0:0:0,0:0,0:39,40:0,0	80:2:0:0:5,6:0,0:72,74:1,2
15	42102305	rs147273269	C	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1231|MAPKBP1|protein_coding|CODING|ENST00000514566|3|1),INTRON(MODIFIER||||1347|MAPKBP1|protein_coding|CODING|ENST00000260357|2|1),INTRON(MODIFIER||||1391|MAPKBP1|protein_coding|CODING|ENST00000221214|3|1),INTRON(MODIFIER||||1508|MAPKBP1|protein_coding|CODING|ENST00000457542|3|1),INTRON(MODIFIER||||1514|MAPKBP1|protein_coding|CODING|ENST00000456763|3|1),INTRON(MODIFIER||||155|MAPKBP1|protein_coding|CODING|ENST00000510535|3|1),INTRON(MODIFIER|||||MAPKBP1|nonsense_mediated_decay|CODING|ENST00000505373|2|1),INTRON(MODIFIER|||||MAPKBP1|nonsense_mediated_decay|CODING|ENST00000512970|3|1),INTRON(MODIFIER|||||MAPKBP1|processed_transcript|CODING|ENST00000507762|2|1),INTRON(MODIFIER|||||MAPKBP1|retained_intron|CODING|ENST00000502292|3|1),INTRON(MODIFIER|||||MAPKBP1|retained_intron|CODING|ENST00000505061|2|1),UPSTREAM(MODIFIER|||||MAPKBP1|retained_intron|CODING|ENST00000507147||1),UPSTREAM(MODIFIER|||||MAPKBP1|retained_intron|CODING|ENST00000515164||1);RSPOS=42102305;GMAF=0.0005;dbSNPBuildID=134;SSR=0;SAO=0;VP=050000080005000014000100;GENEINFO=MAPKBP1:23005;WGT=1;VC=SNV;INT;ASP;KGPhase1;KGPROD	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:0:0:0:0,0:34,34:0,0:0,0	78:2:0:0:0,0:68,70:0,0:8,9
15	43945531	.	G	C	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||AC011330.6|unprocessed_pseudogene|NON_CODING|ENST00000428073||1),INTRON(MODIFIER||||1002|STRC|protein_coding|CODING|ENST00000541030|1|1),INTRON(MODIFIER||||63|CATSPER2|protein_coding|CODING|ENST00000409481|2|1),INTRON(MODIFIER|||||CATSPER2|processed_transcript|CODING|ENST00000464721|2|1),UPSTREAM(MODIFIER||||1433|PPIP5K1|protein_coding|CODING|ENST00000396923||1),UPSTREAM(MODIFIER||||414|CATSPER2|protein_coding|CODING|ENST00000355438||1),UPSTREAM(MODIFIER||||47|CATSPER2|protein_coding|CODING|ENST00000419473||1),UPSTREAM(MODIFIER||||528|CATSPER2|protein_coding|CODING|ENST00000354127||1),UPSTREAM(MODIFIER||||528|CATSPER2|protein_coding|CODING|ENST00000396879||1),UPSTREAM(MODIFIER||||530|CATSPER2|protein_coding|CODING|ENST00000321596||1),UPSTREAM(MODIFIER||||534|CATSPER2|protein_coding|CODING|ENST00000381761||1),UPSTREAM(MODIFIER||||78|CATSPER2|protein_coding|CODING|ENST00000432420||1),UPSTREAM(MODIFIER|||||CATSPER2|retained_intron|CODING|ENST00000415968||1),UPSTREAM(MODIFIER|||||CATSPER2|retained_intron|CODING|ENST00000469461||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	47:2:0:0:0,0:0,0:45,51:0,0	89:2:0:0:0,0:5,6:82,90:0,0
15	44656658	.	C	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||177|CASC4|protein_coding|CODING|ENST00000360824|5|1),INTRON(MODIFIER||||380|CASC4|protein_coding|CODING|ENST00000345795|6|1),INTRON(MODIFIER||||436|CASC4|protein_coding|CODING|ENST00000299957|6|1),INTRON(MODIFIER|||||CASC4|nonsense_mediated_decay|CODING|ENST00000561459|6|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:0:0:0:0,0:32,36:0,0:0,0	95:1:0:0:0,0:88,106:0,0:6,10
15	44670696	.	C	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||177|CASC4|protein_coding|CODING|ENST00000360824|5|1),INTRON(MODIFIER||||380|CASC4|protein_coding|CODING|ENST00000345795|6|1),INTRON(MODIFIER||||436|CASC4|protein_coding|CODING|ENST00000299957|6|1),INTRON(MODIFIER|||||CASC4|nonsense_mediated_decay|CODING|ENST00000561459|6|1),UPSTREAM(MODIFIER|||||CASC4|processed_transcript|CODING|ENST00000559550||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	27:0:0:0:0,0:27,27:0,0:0,0	78:0:0:0:1,1:71,71:0,0:6,6
15	44982954	.	G	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||PATL2|processed_transcript|CODING|ENST00000558573|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:0:0:0:0,0:0,0:29,29:0,0	88:1:0:0:8,8:0,0:79,80:0,0
15	47390963	.	T	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:1:0:0:0,0:0,0:0,0:31,32	61:0:0:0:0,0:7,7:0,0:54,57
15	47417465	.	T	C	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:0:0:0:0,0:0,0:0,0:36,36	83:2:0:0:0,0:5,5:0,0:76,79
15	49697113	.	T	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||508|FAM227B|protein_coding|CODING|ENST00000299338|11|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:1:0:0:0,0:0,0:0,0:29,30	74:0:0:0:0,0:5,5:0,0:69,69
15	50450516	.	T	C	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||52|ATP8B4|protein_coding|CODING|ENST00000558829|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	44:3:0:0:0,0:0,0:0,0:41,44	87:3:0:0:0,0:7,7:0,0:77,85
15	52063433	.	G	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||307|TMOD2|protein_coding|CODING|ENST00000539962|4|1),INTRON(MODIFIER||||315|TMOD2|protein_coding|CODING|ENST00000435126|3|1),INTRON(MODIFIER||||351|TMOD2|protein_coding|CODING|ENST00000249700|3|1),INTRON(MODIFIER|||||TMOD2|retained_intron|CODING|ENST00000560576|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:0:0:0:0,0:0,0:30,30:0,0	71:0:0:0:6,6:0,0:65,65:0,0
15	53219571	.	A	G	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:2:0:0:34,35:0,1:0,0:0,0	86:0:0:0:80,80:0,0:6,6:0,0
15	53496962	.	C	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:1:0:0:0,0:28,29:0,0:0,0	76:0:0:0:1,1:68,68:7,7:0,0
15	54152342	.	A	T	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:0:0:0:38,38:0,0:0,0:0,0	75:0:0:0:70,70:0,0:0,0:5,5
15	54672477	.	C	T	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||2212|UNC13C|protein_coding|CODING|ENST00000537900|15|1),INTRON(MODIFIER||||2214|UNC13C|protein_coding|CODING|ENST00000260323|16|1),INTRON(MODIFIER||||2214|UNC13C|protein_coding|CODING|ENST00000545554|16|1),INTRON(MODIFIER|||||UNC13C|retained_intron|CODING|ENST00000561210|9|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	44:0:0:0:0,0:44,45:0,0:0,0	87:0:0:0:1,1:81,81:0,0:5,5
15	54992401	.	C	T	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:1:0:0:0,0:36,37:0,0:0,0	79:0:0:0:0,0:75,76:0,0:4,4
15	55324653	.	T	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:0:0:0:0,0:0,0:0,0:32,32	81:1:0:0:1,1:6,6:0,0:73,74
15	60701181	.	T	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||RP11-745A24.2|processed_pseudogene|NON_CODING|ENST00000477729||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:1:0:0:0,0:0,0:0,0:31,32	68:0:0:0:0,0:5,5:0,0:63,63
15	61935542	.	A	C	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-507B12.1|processed_transcript|NON_CODING|ENST00000559590|1|1),INTRON(MODIFIER|||||RP11-507B12.1|processed_transcript|NON_CODING|ENST00000560686|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:3:0:0:33,36:0,0:0,0:0,0	75:1:0:0:68,70:6,6:0,0:0,0
15	62806890	.	T	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||TLN2|processed_transcript|CODING|ENST00000561197|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:0:0:0:0,0:0,0:0,0:29,29	68:1:0:0:4,4:0,0:0,0:63,64
15	63056011	.	A	C	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1471|TLN2|protein_coding|CODING|ENST00000494733|13|1),INTRON(MODIFIER||||2542|TLN2|protein_coding|CODING|ENST00000306829|37|1),INTRON(MODIFIER||||2542|TLN2|protein_coding|CODING|ENST00000561311|39|1),INTRON(MODIFIER||||330|TLN2|protein_coding|CODING|ENST00000472902|4|1),INTRON(MODIFIER|||||TLN2|retained_intron|CODING|ENST00000467297|1|1),INTRON(MODIFIER|||||TLN2|retained_intron|CODING|ENST00000489129|8|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:1:0:0:34,35:0,0:0,0:0,0	65:2:0:0:57,59:5,5:1,1:0,0
15	65740220	.	C	T	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||DPP8|processed_transcript|CODING|ENST00000560048||1),INTRON(MODIFIER||||725|DPP8|protein_coding|CODING|ENST00000339244|16|1),INTRON(MODIFIER||||782|DPP8|protein_coding|CODING|ENST00000358939|17|1),INTRON(MODIFIER||||847|DPP8|protein_coding|CODING|ENST00000321147|19|1),INTRON(MODIFIER||||849|DPP8|protein_coding|CODING|ENST00000321118|19|1),INTRON(MODIFIER||||882|DPP8|protein_coding|CODING|ENST00000300141|19|1),INTRON(MODIFIER||||898|DPP8|protein_coding|CODING|ENST00000341861|19|1),INTRON(MODIFIER||||898|DPP8|protein_coding|CODING|ENST00000559233|19|1),INTRON(MODIFIER|||||DPP8|nonsense_mediated_decay|CODING|ENST00000395652|20|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:0:0:0:0,0:38,39:0,0:0,0	79:0:0:0:0,0:74,74:0,0:5,5
15	66473176	.	T	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1044|MEGF11|protein_coding|CODING|ENST00000409699|1|1),INTRON(MODIFIER||||1044|MEGF11|protein_coding|CODING|ENST00000422354|1|1),INTRON(MODIFIER||||137|MEGF11|protein_coding|CODING|ENST00000395614|1|1),INTRON(MODIFIER||||875|MEGF11|protein_coding|CODING|ENST00000360698|1|1),INTRON(MODIFIER||||969|MEGF11|protein_coding|CODING|ENST00000288745|1|1),INTRON(MODIFIER||||969|MEGF11|protein_coding|CODING|ENST00000395625|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:1:0:0:0,0:0,0:0,0:29,30	54:0:0:0:0,0:5,5:1,1:48,48
15	66713161	rs113426722	A	G	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER||||393|MAP2K1|protein_coding|CODING|ENST00000307102|1|1),INTRON(MODIFIER|||||MAP2K1|retained_intron|CODING|ENST00000425818|1|1);RSPOS=66713161;dbSNPBuildID=132;SSR=0;SAO=0;VP=050000080005000002000100;GENEINFO=MAP2K1:5604;WGT=1;VC=SNV;INT;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	23:1:0:0:22,24:0,0:0,0:0,0	38:4:0:0:28,34:0,0:6,6:0,0
15	69452164	.	A	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER||||617|GLCE|protein_coding|CODING|ENST00000261858||1),UPSTREAM(MODIFIER|||||AC026512.1|miRNA|NON_CODING|ENST00000584174||1),UPSTREAM(MODIFIER|||||GLCE|processed_transcript|CODING|ENST00000559798||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:1:0:0:27,28:0,0:1,1:0,0	76:0:0:0:69,69:7,8:0,0:0,0
15	75021521	.	T	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER||||157|CYP1A1|protein_coding|CODING|ENST00000564596||1),UPSTREAM(MODIFIER||||174|CYP1A1|protein_coding|CODING|ENST00000566503||1),UPSTREAM(MODIFIER||||483|CYP1A1|protein_coding|CODING|ENST00000395049||1),UPSTREAM(MODIFIER||||512|CYP1A1|protein_coding|CODING|ENST00000379727||1),UPSTREAM(MODIFIER||||512|CYP1A1|protein_coding|CODING|ENST00000395048||1),UPSTREAM(MODIFIER||||512|CYP1A1|protein_coding|CODING|ENST00000567032||1),UPSTREAM(MODIFIER|||||CYP1A1|nonsense_mediated_decay|CODING|ENST00000562201||1),UPSTREAM(MODIFIER|||||CYP1A1|nonsense_mediated_decay|CODING|ENST00000569630||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	46:1:0:0:0,0:0,2:4,6:41,48	74:5:0:0:0,0:10,16:3,5:56,62
15	75383445	.	A	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||PPCDC|processed_transcript|CODING|ENST00000563298|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:0:0:0:28,28:0,0:1,1:0,0	68:1:0:0:58,58:8,8:1,2:0,0
15	75383450	.	A	G	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||PPCDC|processed_transcript|CODING|ENST00000563298|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:0:0:0:32,32:0,0:0,0:0,0	68:1:0:0:61,62:0,0:6,6:0,0
15	75392239	.	C	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||PPCDC|processed_transcript|CODING|ENST00000563298|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:1:0:0:0,0:30,32:0,0:0,0	66:1:0:0:0,0:60,61:0,0:5,6
15	75763816	.	T	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||593|PTPN9|protein_coding|CODING|ENST00000306726|10|1),INTRON(MODIFIER|||||PTPN9|processed_transcript|CODING|ENST00000563835|2|1),UPSTREAM(MODIFIER|||||PTPN9|retained_intron|CODING|ENST00000568108||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:0:0:0:0,0:0,0:0,0:31,31	63:1:0:0:0,0:4,5:1,1:57,58
15	76398055	.	C	T	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||531|C15orf27|protein_coding|CODING|ENST00000388942|1|1),INTRON(MODIFIER|||||C15orf27|nonsense_mediated_decay|CODING|ENST00000484722|1|1),INTRON(MODIFIER|||||C15orf27|nonsense_mediated_decay|CODING|ENST00000561302|1|1),INTRON(MODIFIER|||||C15orf27|processed_transcript|CODING|ENST00000559079|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:0:0:0:0,0:37,37:0,0:0,0	68:0:0:0:0,0:63,63:0,0:5,5
15	76609814	.	G	A	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:0:0:0:0,0:0,0:35,35:0,0	78:1:0:0:5,5:0,1:72,72:0,0
15	77852985	.	A	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	28:0:0:0:28,28:0,0:0,0:0,0	72:2:0:0:62,65:0,0:7,7:1,1
15	77853642	.	G	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:2:0:0:0,0:0,0:30,32:0,0	73:1:0:0:0,0:5,5:67,70:0,0
15	78796399	.	C	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||963|IREB2|protein_coding|CODING|ENST00000258886||1),INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER||||172|AGPHD1|protein_coding|CODING|ENST00000360519||1),UPSTREAM(MODIFIER||||220|AGPHD1|protein_coding|CODING|ENST00000408962||1),UPSTREAM(MODIFIER||||226|AGPHD1|protein_coding|CODING|ENST00000566332||1),UPSTREAM(MODIFIER||||373|AGPHD1|protein_coding|CODING|ENST00000388988||1),UPSTREAM(MODIFIER|||||AGPHD1|nonsense_mediated_decay|CODING|ENST00000566289||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:0:0:0:0,0:29,32:0,0:0,0	76:0:0:0:0,0:71,71:5,5:0,0
15	79509769	.	T	C	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-17L5.4|lincRNA|NON_CODING|ENST00000559225|1|1),INTRON(MODIFIER|||||RP11-17L5.4|lincRNA|NON_CODING|ENST00000560533|2|1),INTRON(MODIFIER|||||RP11-17L5.4|lincRNA|NON_CODING|ENST00000560872|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	44:0:0:0:0,0:0,0:0,0:44,44	95:0:0:0:1,1:6,6:0,0:88,88
15	79519934	.	A	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-17L5.4|lincRNA|NON_CODING|ENST00000559225|1|1),INTRON(MODIFIER|||||RP11-17L5.4|lincRNA|NON_CODING|ENST00000560533|2|1),INTRON(MODIFIER|||||RP11-17L5.4|lincRNA|NON_CODING|ENST00000560872|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:0:0:0:29,29:1,1:0,0:0,0	78:0:0:0:70,70:0,0:0,0:8,8
15	80759969	rs138660650	C	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||129|ARNT2|protein_coding|CODING|ENST00000525103|1|1),INTRON(MODIFIER||||706|ARNT2|protein_coding|CODING|ENST00000527771|3|1),INTRON(MODIFIER||||706|ARNT2|protein_coding|CODING|ENST00000533983|4|1),INTRON(MODIFIER||||717|ARNT2|protein_coding|CODING|ENST00000303329|3|1),INTRON(MODIFIER|||||ARNT2|retained_intron|CODING|ENST00000529181|3|1),UPSTREAM(MODIFIER|||||ARNT2|processed_transcript|CODING|ENST00000531595||1);RSPOS=80759969;GMAF=0.0032;dbSNPBuildID=134;SSR=0;SAO=0;VP=050000080005000014000100;GENEINFO=ARNT2:9915;WGT=1;VC=SNV;INT;ASP;KGPhase1;KGPROD	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:0:0:0:0,0:33,33:1,1:0,0	58:0:0:0:0,0:53,55:0,0:5,5
15	83450560	.	T	C	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||704|FSD2|protein_coding|CODING|ENST00000541889|4|1),INTRON(MODIFIER||||749|FSD2|protein_coding|CODING|ENST00000334574|4|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:2:0:0:0,0:0,0:0,0:33,35	69:3:0:0:0,0:7,8:2,3:57,60
15	83466130	.	G	A	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||100|FSD2|protein_coding|CODING|ENST00000561368|1|1),INTRON(MODIFIER||||704|FSD2|protein_coding|CODING|ENST00000541889|1|1),INTRON(MODIFIER||||749|FSD2|protein_coding|CODING|ENST00000334574|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:1:0:0:0,0:0,0:35,36:0,0	83:0:0:0:5,5:0,0:78,79:0,0
15	85167325	.	C	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||106|ZSCAN2|protein_coding|CODING|ENST00000540936||1),DOWNSTREAM(MODIFIER||||200|ZSCAN2|protein_coding|CODING|ENST00000485222||1),DOWNSTREAM(MODIFIER||||210|ZSCAN2|protein_coding|CODING|ENST00000541040||1),DOWNSTREAM(MODIFIER||||238|ZSCAN2|protein_coding|CODING|ENST00000538076||1),DOWNSTREAM(MODIFIER||||464|ZSCAN2|protein_coding|CODING|ENST00000358472||1),DOWNSTREAM(MODIFIER||||613|ZSCAN2|protein_coding|CODING|ENST00000327179||1),DOWNSTREAM(MODIFIER||||614|ZSCAN2|protein_coding|CODING|ENST00000448803||1),DOWNSTREAM(MODIFIER||||614|ZSCAN2|protein_coding|CODING|ENST00000546148||1),DOWNSTREAM(MODIFIER|||||ZSCAN2|nonsense_mediated_decay|CODING|ENST00000540894||1),INTRON(MODIFIER|||||ZSCAN2|processed_transcript|CODING|ENST00000303310|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:3:0:0:0,0:34,37:0,0:0,0	62:0:0:0:0,0:57,57:0,0:5,5
15	86682629	.	G	T	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||RP11-553E24.1|processed_pseudogene|NON_CODING|ENST00000567945||1),INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER||||1062|AGBL1|protein_coding|CODING|ENST00000421325||1),UPSTREAM(MODIFIER||||1066|AGBL1|protein_coding|CODING|ENST00000441037||1),UPSTREAM(MODIFIER|||||RNA5SP400|rRNA|NON_CODING|ENST00000517155||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:0:0:0:0,0:0,0:37,37:0,0	76:0:0:0:0,0:0,0:71,71:5,5
15	87615613	.	G	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:2:0:0:0,0:0,0:31,33:0,0	80:1:0:0:0,0:0,0:75,76:4,4
15	88916989	.	A	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:0:0:0:34,34:0,0:0,0:0,0	80:0:0:0:75,75:1,1:0,0:4,4
15	88931436	.	A	C	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:0:0:0:36,36:0,0:0,0:0,0	73:2:0:0:66,68:5,5:0,0:0,0
15	89400157	rs201505307	G	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->CG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|gaG/gaC|E1447D|2431|ACAN|protein_coding|CODING|ENST00000352105|12|1),NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|gaG/gaC|E1447D|2492|ACAN|protein_coding|CODING|ENST00000559004|12|1),NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|gaG/gaC|E1447D|2530|ACAN|protein_coding|CODING|ENST00000439576|12|1),NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|gaG/gaC|E1447D|2530|ACAN|protein_coding|CODING|ENST00000561243|11|1);RSPOS=89400157;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000000a05000002000100;WGT=1;VC=SNV;NSM;REF;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:4:0:0:0,0:0,1:34,38:1,1	87:4:0:0:0,0:9,9:74,79:0,0
15	89571229	.	C	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	27:0:0:0:0,0:27,27:0,0:0,0	65:0:0:0:0,0:58,60:0,0:7,7
15	90047045	.	C	G	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||RP11-429B14.2|lincRNA|NON_CODING|ENST00000559967||1),DOWNSTREAM(MODIFIER|||||RP11-429B14.2|lincRNA|NON_CODING|ENST00000561108||1),DOWNSTREAM(MODIFIER|||||RP11-429B14.2|lincRNA|NON_CODING|ENST00000561201||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:1:0:0:0,0:35,37:0,0:0,0	74:0:0:0:0,0:69,69:5,5:0,0
15	90206801	rs112340581	T	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||522|PLIN1|protein_coding|CODING|ENST00000300055||1),DOWNSTREAM(MODIFIER||||522|PLIN1|protein_coding|CODING|ENST00000430628||1),DOWNSTREAM(MODIFIER||||73|PLIN1|protein_coding|CODING|ENST00000560330||1),INTERGENIC(MODIFIER||||||||||1);RSPOS=90206801;dbSNPBuildID=132;SSR=0;SAO=0;VP=050000000001040102000100;WGT=1;VC=SNV;VLD;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	26:0:0:0:0,0:0,0:0,0:26,31	61:0:0:0:1,1:7,7:0,1:53,72
15	91443029	.	G	A	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||681|FES|protein_coding|CODING|ENST00000394302||1),DOWNSTREAM(MODIFIER||||694|FES|protein_coding|CODING|ENST00000414248||1),DOWNSTREAM(MODIFIER||||694|FES|protein_coding|CODING|ENST00000450438||1),DOWNSTREAM(MODIFIER||||752|FES|protein_coding|CODING|ENST00000444422||1),DOWNSTREAM(MODIFIER||||764|FES|protein_coding|CODING|ENST00000394300||1),DOWNSTREAM(MODIFIER||||822|FES|protein_coding|CODING|ENST00000328850||1),DOWNSTREAM(MODIFIER|||||FES|nonsense_mediated_decay|CODING|ENST00000464684||1),INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER||||1150|MAN2A2|protein_coding|CODING|ENST00000360468||1),UPSTREAM(MODIFIER||||1150|MAN2A2|protein_coding|CODING|ENST00000559717||1),UPSTREAM(MODIFIER||||119|MAN2A2|protein_coding|CODING|ENST00000559999||1),UPSTREAM(MODIFIER||||49|MAN2A2|protein_coding|CODING|ENST00000558853||1),UPSTREAM(MODIFIER||||71|MAN2A2|protein_coding|CODING|ENST00000558290||1),UPSTREAM(MODIFIER||||75|MAN2A2|protein_coding|CODING|ENST00000559965||1),UPSTREAM(MODIFIER|||||MAN2A2|nonsense_mediated_decay|CODING|ENST00000558161||1),UPSTREAM(MODIFIER|||||MAN2A2|nonsense_mediated_decay|CODING|ENST00000560451||1),UPSTREAM(MODIFIER|||||MAN2A2|processed_transcript|CODING|ENST00000560534||1),UPSTREAM(MODIFIER|||||MAN2A2|retained_intron|CODING|ENST00000560192||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	43:0:0:0:0,0:0,0:43,44:0,0	88:3:0:0:7,8:0,0:78,80:0,0
15	91840301	.	G	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||532|SV2B|protein_coding|CODING|ENST00000545111||1),DOWNSTREAM(MODIFIER|||||SV2B|nonsense_mediated_decay|CODING|ENST00000557410||1),UTR_3_PRIME(MODIFIER||||683|SV2B|protein_coding|CODING|ENST00000330276|12|1),UTR_3_PRIME(MODIFIER||||683|SV2B|protein_coding|CODING|ENST00000394232|13|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:0:0:0:0,0:0,0:30,32:0,0	69:2:1:0:5,5:1,1:61,69:0,0
15	92293841	rs200791581	G	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=92293841;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:1:0:0:0,1:0,0:39,46:0,0	90:1:0:0:7,10:0,0:82,95:0,0
15	92293843	.	G	A	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:1:0:0:0,0:0,0:39,47:0,0	90:1:0:0:7,7:0,0:82,98:0,0
15	93084724	.	C	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:0:0:0:0,0:31,31:0,0:0,0	81:2:0:0:7,7:72,74:0,0:0,0
15	93305674	.	A	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||113|FAM174B|protein_coding|CODING|ENST00000557398|1|1),UPSTREAM(MODIFIER|||||CTD-2313J17.3|unprocessed_pseudogene|NON_CODING|ENST00000554322||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:1:0:0:31,33:0,0:0,0:0,0	92:1:0:0:85,88:0,0:6,6:0,0
15	93817310	.	A	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:1:0:0:30,31:0,0:0,0:0,0	80:0:0:0:74,75:1,1:5,5:0,0
15	94384725	.	A	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||CTD-3049M7.1|lincRNA|NON_CODING|ENST00000557481|3|1),INTRON(MODIFIER|||||RP11-76E17.2|lincRNA|NON_CODING|ENST00000553477|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:2:0:0:35,37:0,0:1,1:0,0	82:1:0:0:74,75:0,0:0,0:7,7
15	94629844	.	G	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||CTD-2643K12.3|lincRNA|NON_CODING|ENST00000556357|1|1),INTRON(MODIFIER|||||CTD-2643K12.3|lincRNA|NON_CODING|ENST00000558874|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:0:0:0:0,0:0,0:32,32:0,0	71:1:0:0:6,7:0,0:64,64:0,0
15	96015603	.	C	A	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-398J10.1|lincRNA|NON_CODING|ENST00000554837|3|1),INTRON(MODIFIER|||||RP11-398J10.1|lincRNA|NON_CODING|ENST00000556053|3|1),INTRON(MODIFIER|||||RP11-398J10.2|lincRNA|NON_CODING|ENST00000554412|2|1),UPSTREAM(MODIFIER|||||RP11-398J10.2|lincRNA|NON_CODING|ENST00000554583||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:0:0:0:0,0:34,34:0,0:0,0	71:0:0:0:4,4:67,67:0,0:0,0
15	96472625	.	C	A	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:0:0:0:0,0:34,34:0,0:0,0	80:1:0:0:8,8:70,71:0,0:1,1
15	96516943	.	G	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	27:0:0:0:0,0:0,0:27,27:0,0	65:2:0:0:0,0:0,0:57,59:6,6
15	97046746	.	G	T	.	PASS	NT=ref;QSS=23;QSS_NT=23;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	41:1:0:0:0,0:0,0:40,41:0,0	71:0:0:0:0,0:0,0:61,61:10,10
15	98202887	.	G	A	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:0:0:0:0,0:0,0:35,35:0,0	73:0:0:0:4,4:0,0:69,69:0,0
15	99031790	.	C	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||192|FAM169B|protein_coding|CODING|ENST00000558256|2|1),UPSTREAM(MODIFIER||||192|FAM169B|protein_coding|CODING|ENST00000332908||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:0:0:0:0,0:32,32:0,0:0,0	80:0:0:0:0,0:75,75:0,0:5,5
15	100618312	.	T	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1095|ADAMTS17|protein_coding|CODING|ENST00000268070|15|1),INTRON(MODIFIER|||||ADAMTS17|retained_intron|CODING|ENST00000378898|14|1),UPSTREAM(MODIFIER|||||RNA5SP402|rRNA|NON_CODING|ENST00000517148||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:0:0:0:0,0:0,0:0,0:30,30	71:3:0:0:0,0:4,4:0,0:64,67
15	100651949	.	A	T	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1095|ADAMTS17|protein_coding|CODING|ENST00000268070|13|1),INTRON(MODIFIER|||||ADAMTS17|retained_intron|CODING|ENST00000378898|12|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	43:0:0:0:43,43:0,0:0,0:0,0	73:1:0:0:67,68:0,0:0,0:5,5
15	101084552	rs12916272	G	C	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||383|CERS3|protein_coding|CODING|ENST00000284382|1|1),INTRON(MODIFIER|||||CERS3|processed_transcript|CODING|ENST00000560944|1|1),UPSTREAM(MODIFIER||||110|CERS3|protein_coding|CODING|ENST00000560233||1),UPSTREAM(MODIFIER||||14|CERS3|protein_coding|CODING|ENST00000559639||1),UPSTREAM(MODIFIER||||161|CERS3|protein_coding|CODING|ENST00000558884||1),UPSTREAM(MODIFIER||||383|CERS3|protein_coding|CODING|ENST00000538112||1),UTR_5_PRIME(MODIFIER||||383|CERS3|protein_coding|CODING|ENST00000394113|1|1);RSPOS=101084552;dbSNPBuildID=121;SSR=0;SAO=0;VP=050000080001000002000100;GENEINFO=CERS3:204219;WGT=1;VC=SNV;INT;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:0:0:0:0,0:0,0:33,33:0,0	71:0:0:0:0,0:6,6:65,65:0,0
15	101308115	.	T	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-66B24.5|lincRNA|NON_CODING|ENST00000559755|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	42:1:0:0:0,0:0,1:0,0:41,44	83:4:0:0:0,0:5,7:2,3:72,76
15	101742318	.	G	C	.	PASS	NT=ref;QSS=25;QSS_NT=25;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||802|CHSY1|protein_coding|CODING|ENST00000254190|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	50:1:0:0:0,0:0,0:49,52:0,0	76:2:0:0:0,0:8,9:66,76:0,0
15	102304770	rs62026988	C	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=EXON(MODIFIER|||||CTD-2611K5.6|lincRNA|NON_CODING|ENST00000561463|2|1),EXON(MODIFIER|||||CTD-2611K5.6|transcribed_unprocessed_pseudogene|NON_CODING|ENST00000571780|2|1);RSPOS=102304770;dbSNPBuildID=129;SSR=0;SAO=0;VP=050000000005070102000100;WGT=1;VC=SNV;ASP;VLD;G5A;G5;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:2:0:0:0,0:29,40:0,1:0,2	76:5:0:0:0,0:65,79:1,1:5,5
15	102510958	.	G	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=DOWNSTREAM(MODIFIER|||||WASH3P|processed_transcript|NON_CODING|ENST00000559884||1),INTRON(MODIFIER|||||WASH3P|processed_transcript|NON_CODING|ENST00000354296|2|1),INTRON(MODIFIER|||||WASH3P|processed_transcript|NON_CODING|ENST00000557932|1|1),INTRON(MODIFIER|||||WASH3P|processed_transcript|NON_CODING|ENST00000558686|2|1),INTRON(MODIFIER|||||WASH3P|processed_transcript|NON_CODING|ENST00000558784|1|1),INTRON(MODIFIER|||||WASH3P|processed_transcript|NON_CODING|ENST00000559163|2|1),INTRON(MODIFIER|||||WASH3P|transcribed_unprocessed_pseudogene|NON_CODING|ENST00000560956|1|1),INTRON(MODIFIER|||||WASH3P|unprocessed_pseudogene|NON_CODING|ENST00000338304|2|1),INTRON(MODIFIER|||||WASH3P|unprocessed_pseudogene|NON_CODING|ENST00000378819|1|1),INTRON(MODIFIER|||||WASH3P|unprocessed_pseudogene|NON_CODING|ENST00000398121|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	20:0:0:0:0,1:0,0:20,20:0,0	54:0:0:0:10,13:0,0:44,44:0,0
15	102513649	.	G	C	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=GG->CG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=DOWNSTREAM(MODIFIER|||||DDX11L9|processed_transcript|NON_CODING|ENST00000559159||1),DOWNSTREAM(MODIFIER|||||DDX11L9|processed_transcript|NON_CODING|ENST00000562189||1),DOWNSTREAM(MODIFIER|||||DDX11L9|pseudogene|NON_CODING|ENST00000538648||1),DOWNSTREAM(MODIFIER|||||DDX11L9|transcribed_unprocessed_pseudogene|NON_CODING|ENST00000560040||1),DOWNSTREAM(MODIFIER|||||DDX11L9|unprocessed_pseudogene|NON_CODING|ENST00000515173||1),DOWNSTREAM(MODIFIER|||||WASH3P|processed_transcript|NON_CODING|ENST00000558686||1),DOWNSTREAM(MODIFIER|||||WASH3P|processed_transcript|NON_CODING|ENST00000559163||1),INTRON(MODIFIER|||||WASH3P|processed_transcript|NON_CODING|ENST00000354296|6|1),INTRON(MODIFIER|||||WASH3P|processed_transcript|NON_CODING|ENST00000557932|4|1),INTRON(MODIFIER|||||WASH3P|processed_transcript|NON_CODING|ENST00000558784|4|1),INTRON(MODIFIER|||||WASH3P|transcribed_unprocessed_pseudogene|NON_CODING|ENST00000560956|4|1),INTRON(MODIFIER|||||WASH3P|unprocessed_pseudogene|NON_CODING|ENST00000338304|7|1),INTRON(MODIFIER|||||WASH3P|unprocessed_pseudogene|NON_CODING|ENST00000378819|5|1),INTRON(MODIFIER|||||WASH3P|unprocessed_pseudogene|NON_CODING|ENST00000398121|5|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:0:0:0:0,0:0,0:29,32:0,0	44:1:0:0:0,0:8,8:35,41:0,0
16	274260	.	A	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||LUC7L|retained_intron|CODING|ENST00000467552||1),DOWNSTREAM(MODIFIER|||||LUC7L|retained_intron|CODING|ENST00000494545||1),INTRON(MODIFIER||||181|LUC7L|protein_coding|CODING|ENST00000430864|1|1),INTRON(MODIFIER||||272|LUC7L|protein_coding|CODING|ENST00000397780|1|1),INTRON(MODIFIER||||31|LUC7L|protein_coding|CODING|ENST00000428363|3|1),INTRON(MODIFIER||||325|LUC7L|protein_coding|CODING|ENST00000337351|2|1),INTRON(MODIFIER||||325|LUC7L|protein_coding|CODING|ENST00000397783|2|1),INTRON(MODIFIER||||371|LUC7L|protein_coding|CODING|ENST00000293872|2|1),INTRON(MODIFIER||||83|LUC7L|protein_coding|CODING|ENST00000443357|1|1),INTRON(MODIFIER|||||LUC7L|nonsense_mediated_decay|CODING|ENST00000418978|3|1),INTRON(MODIFIER|||||LUC7L|nonsense_mediated_decay|CODING|ENST00000419516|3|1),INTRON(MODIFIER|||||LUC7L|nonsense_mediated_decay|CODING|ENST00000426094|2|1),INTRON(MODIFIER|||||LUC7L|processed_transcript|CODING|ENST00000494366|2|1),INTRON(MODIFIER|||||LUC7L|retained_intron|CODING|ENST00000469109|1|1),INTRON(MODIFIER|||||LUC7L|retained_intron|CODING|ENST00000490762|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:1:0:0:29,31:0,0:0,0:0,0	56:0:0:0:51,51:0,0:5,5:0,0
16	436725	.	C	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->AC;SOMATIC;TQSS=2;TQSS_NT=2;EFF=EXON(MODIFIER|||||Z97634.5|processed_transcript|NON_CODING|ENST00000457760|3|1),EXON(MODIFIER|||||Z97634.5|processed_transcript|NON_CODING|ENST00000544386|1|1),INTRON(MODIFIER||||20|TMEM8A|protein_coding|CODING|ENST00000427313|1|1),INTRON(MODIFIER|||||TMEM8A|processed_transcript|CODING|ENST00000476735|1|1),INTRON(MODIFIER|||||Z97634.5|processed_transcript|NON_CODING|ENST00000412293|2|1),UPSTREAM(MODIFIER||||578|TMEM8A|protein_coding|CODING|ENST00000250930||1),UPSTREAM(MODIFIER||||771|TMEM8A|protein_coding|CODING|ENST00000431232||1),UPSTREAM(MODIFIER|||||Z97634.3|processed_pseudogene|NON_CODING|ENST00000435229||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	51:3:0:0:0,1:48,50:0,0:0,0	76:1:0:0:8,8:67,69:0,0:0,0
16	462971	.	A	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||211|DECR2|protein_coding|CODING|ENST00000397710||1),DOWNSTREAM(MODIFIER||||280|DECR2|protein_coding|CODING|ENST00000424398||1),DOWNSTREAM(MODIFIER||||292|DECR2|protein_coding|CODING|ENST00000219481||1),DOWNSTREAM(MODIFIER|||||DECR2|nonsense_mediated_decay|CODING|ENST00000382934||1),DOWNSTREAM(MODIFIER|||||DECR2|nonsense_mediated_decay|CODING|ENST00000437024||1),DOWNSTREAM(MODIFIER|||||DECR2|nonsense_mediated_decay|CODING|ENST00000439661||1),DOWNSTREAM(MODIFIER|||||DECR2|nonsense_mediated_decay|CODING|ENST00000445291||1),DOWNSTREAM(MODIFIER|||||DECR2|processed_transcript|CODING|ENST00000461947||1),DOWNSTREAM(MODIFIER|||||DECR2|retained_intron|CODING|ENST00000461749||1),DOWNSTREAM(MODIFIER|||||DECR2|retained_intron|CODING|ENST00000465166||1),DOWNSTREAM(MODIFIER|||||DECR2|retained_intron|CODING|ENST00000469922||1),DOWNSTREAM(MODIFIER|||||NME4|nonsense_mediated_decay|CODING|ENST00000444498||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:3:0:0:31,33:0,1:1,1:0,0	63:4:0:0:49,50:1,4:9,9:0,0
16	508395	rs5002825	A	G	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||RP1-196A12.1|processed_pseudogene|NON_CODING|ENST00000430231||1),INTRON(MODIFIER||||677|RAB11FIP3|protein_coding|CODING|ENST00000434585|1|1),INTRON(MODIFIER||||756|RAB11FIP3|protein_coding|CODING|ENST00000262305|1|1),INTRON(MODIFIER||||801|RAB11FIP3|protein_coding|CODING|ENST00000457159|1|1);RSPOS=508395;dbSNPBuildID=113;SSR=0;SAO=0;VP=050000080001040502000100;GENEINFO=RAB11FIP3:9727;WGT=1;VC=SNV;INT;VLD;HD;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	42:0:0:0:42,44:0,0:0,1:0,0	67:2:0:0:59,62:1,1:5,6:0,0
16	518238	.	G	A	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||677|RAB11FIP3|protein_coding|CODING|ENST00000434585|2|1),INTRON(MODIFIER||||756|RAB11FIP3|protein_coding|CODING|ENST00000262305|2|1),INTRON(MODIFIER||||801|RAB11FIP3|protein_coding|CODING|ENST00000457159|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	44:8:0:0:0,0:0,0:36,74:0,0	102:6:0:0:7,10:1,1:88,135:0,0
16	629447	rs34523874	A	G	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||147|PIGQ|protein_coding|CODING|ENST00000293874||1),DOWNSTREAM(MODIFIER||||250|PIGQ|protein_coding|CODING|ENST00000409439||1),DOWNSTREAM(MODIFIER||||299|PIGQ|protein_coding|CODING|ENST00000470411||1),DOWNSTREAM(MODIFIER||||313|PIGQ|protein_coding|CODING|ENST00000422307||1),DOWNSTREAM(MODIFIER|||||PIGQ|processed_transcript|CODING|ENST00000544860||1),DOWNSTREAM(MODIFIER|||||PIGQ|retained_intron|CODING|ENST00000537901||1),INTRON(MODIFIER||||139|PIGQ|protein_coding|CODING|ENST00000540241|1|1),INTRON(MODIFIER||||581|PIGQ|protein_coding|CODING|ENST00000321878|7|1),INTRON(MODIFIER||||581|PIGQ|protein_coding|CODING|ENST00000409527|8|1),INTRON(MODIFIER||||760|PIGQ|protein_coding|CODING|ENST00000026218|7|1),INTRON(MODIFIER|||||PIGQ|nonsense_mediated_decay|CODING|ENST00000443147|7|1),INTRON(MODIFIER|||||PIGQ|retained_intron|CODING|ENST00000480424|2|1),UPSTREAM(MODIFIER|||||PIGQ|processed_transcript|CODING|ENST00000540548||1),UPSTREAM(MODIFIER|||||PIGQ|retained_intron|CODING|ENST00000476438||1);RSPOS=629447;GMAF=0.3324;dbSNPBuildID=126;SSR=0;SAO=0;VP=050000080005030116000100;GENEINFO=PIGQ:9091;WGT=1;VC=SNV;INT;ASP;G5A;G5;GNO;KGPhase1;KGPROD;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:0:0:0:32,33:0,0:0,0:0,0	63:1:0:0:55,60:0,0:7,7:0,0
16	907439	.	A	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||330|LMF1|protein_coding|CODING|ENST00000543238|7|1),INTRON(MODIFIER||||350|LMF1|protein_coding|CODING|ENST00000568897|9|1),INTRON(MODIFIER||||567|LMF1|protein_coding|CODING|ENST00000262301|10|1),INTRON(MODIFIER||||567|LMF1|protein_coding|CODING|ENST00000399843|10|1),INTRON(MODIFIER|||||LMF1|nonsense_mediated_decay|CODING|ENST00000545827|11|1),INTRON(MODIFIER|||||LMF1|nonsense_mediated_decay|CODING|ENST00000565276|1|1),INTRON(MODIFIER|||||LMF1|retained_intron|CODING|ENST00000569516|4|1),UPSTREAM(MODIFIER|||||LMF1|TEC|CODING|ENST00000568992||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:1:0:0:35,40:0,0:1,1:0,0	76:3:0:0:66,70:0,0:1,1:6,8
16	992542	.	C	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||134|LMF1|protein_coding|CODING|ENST00000562380|2|1),INTRON(MODIFIER||||149|LMF1|protein_coding|CODING|ENST00000566627|1|1),INTRON(MODIFIER||||166|LMF1|protein_coding|CODING|ENST00000539379|2|1),INTRON(MODIFIER||||197|LMF1|protein_coding|CODING|ENST00000570014|2|1),INTRON(MODIFIER||||330|LMF1|protein_coding|CODING|ENST00000543238|1|1),INTRON(MODIFIER||||350|LMF1|protein_coding|CODING|ENST00000568897|2|1),INTRON(MODIFIER||||567|LMF1|protein_coding|CODING|ENST00000262301|2|1),INTRON(MODIFIER||||567|LMF1|protein_coding|CODING|ENST00000399843|3|1),INTRON(MODIFIER|||||LMF1|nonsense_mediated_decay|CODING|ENST00000545827|2|1),INTRON(MODIFIER|||||LMF1|nonsense_mediated_decay|CODING|ENST00000562226|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	28:0:0:0:0,0:28,28:0,0:0,0	54:0:0:0:0,0:49,49:5,5:0,0
16	1084099	.	T	C	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=TT->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	49:2:0:0:0,0:0,1:0,1:47,51	73:3:0:0:0,0:6,8:0,0:64,68
16	1642935	.	C	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1462|IFT140|protein_coding|CODING|ENST00000426508|4|1),INTRON(MODIFIER|||||IFT140|nonsense_mediated_decay|CODING|ENST00000397417|3|1),INTRON(MODIFIER|||||IFT140|processed_transcript|CODING|ENST00000439987|3|1),INTRON(MODIFIER|||||LA16c-395F10.2|antisense|NON_CODING|ENST00000563162|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	26:0:0:0:0,0:26,26:0,0:0,0	76:5:0:0:1,1:59,63:1,3:10,14
16	2084315	.	G	C	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||150|SLC9A3R2|protein_coding|CODING|ENST00000567504|2|1),INTRON(MODIFIER||||222|SLC9A3R2|protein_coding|CODING|ENST00000565855|1|1),INTRON(MODIFIER||||226|SLC9A3R2|protein_coding|CODING|ENST00000566198|1|1),INTRON(MODIFIER||||231|SLC9A3R2|protein_coding|CODING|ENST00000563587|1|1),INTRON(MODIFIER||||326|SLC9A3R2|protein_coding|CODING|ENST00000432365|2|1),INTRON(MODIFIER||||337|SLC9A3R2|protein_coding|CODING|ENST00000424542|2|1),INTRON(MODIFIER|||||SLC9A3R2|processed_transcript|CODING|ENST00000565086|1|1),UPSTREAM(MODIFIER|||||SLC9A3R2|retained_intron|CODING|ENST00000564033||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:0:0:0:0,0:1,1:35,36:0,0	64:0:0:0:0,0:13,14:51,57:0,0
16	2929565	.	A	G	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER||||140|FLYWCH2|protein_coding|CODING|ENST00000293981||1),UPSTREAM(MODIFIER||||140|FLYWCH2|protein_coding|CODING|ENST00000396958||1),UPSTREAM(MODIFIER||||144|FLYWCH2|protein_coding|CODING|ENST00000572006||1),UPSTREAM(MODIFIER||||90|FLYWCH2|protein_coding|CODING|ENST00000573965||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:0:0:0:38,38:0,0:0,0:0,0	82:0:0:0:76,77:0,0:6,6:0,0
16	3681771	.	A	G	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||DNASE1|nonsense_mediated_decay|CODING|ENST00000570769|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	47:1:0:0:45,46:1,1:0,0:0,0	95:1:0:0:86,86:2,3:6,6:0,0
16	3881324	rs192566389	A	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||2404|CREBBP|protein_coding|CODING|ENST00000382070|2|1),INTRON(MODIFIER||||2442|CREBBP|protein_coding|CODING|ENST00000262367|2|1);RSPOS=3881324;GMAF=0.006;dbSNPBuildID=135;SSR=0;SAO=0;VP=050000080005000014000100;GENEINFO=CREBBP:1387;WGT=1;VC=SNV;INT;ASP;KGPhase1;KGPROD	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:1:0:0:35,35:0,0:0,1:0,0	67:1:0:0:60,61:0,0:0,0:6,6
16	3994081	.	G	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||RP11-462G12.1|sense_overlapping|NON_CODING|ENST00000576810||1),INTRON(MODIFIER|||||RP11-462G12.2|sense_overlapping|NON_CODING|ENST00000571302|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:0:0:0:0,0:0,0:38,38:0,0	66:3:0:0:0,0:5,7:58,62:0,0
16	3994200	.	T	C	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||RP11-462G12.1|sense_overlapping|NON_CODING|ENST00000576810||1),INTRON(MODIFIER|||||RP11-462G12.2|sense_overlapping|NON_CODING|ENST00000571302|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:4:0:0:0,0:0,0:0,2:33,36	64:1:0:0:0,0:7,7:1,1:55,56
16	4339780	.	T	C	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	42:0:0:0:0,0:0,0:0,0:42,42	59:2:0:0:0,0:6,7:0,0:51,53
16	4596115	.	C	T	.	PASS	NT=ref;QSS=23;QSS_NT=23;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:0:0:0:0,0:35,35:0,0:0,0	72:3:0:0:0,1:58,60:0,0:11,11
16	5121881	.	C	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=EXON(MODIFIER|||||ALG1|nonsense_mediated_decay|CODING|ENST00000591822|1|1),EXON(MODIFIER|||||ALG1|retained_intron|CODING|ENST00000592793|1|1),INTRON(MODIFIER||||353|ALG1|protein_coding|CODING|ENST00000588623|2|1),SYNONYMOUS_CODING(LOW|SILENT|Ctg/Ttg|L11|183|ALG1|protein_coding|CODING|ENST00000586840|1|1),SYNONYMOUS_CODING(LOW|SILENT|Ctg/Ttg|L11|464|ALG1|protein_coding|CODING|ENST00000262374|1|1),UPSTREAM(MODIFIER||||166|ALG1|protein_coding|CODING|ENST00000591783||1),UPSTREAM(MODIFIER||||353|ALG1|protein_coding|CODING|ENST00000544428||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	42:0:0:0:0,0:42,42:0,0:0,0	62:1:0:0:0,0:57,58:0,0:4,4
16	5143842	.	C	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||269|FAM86A|protein_coding|CODING|ENST00000587133|2|1),INTRON(MODIFIER||||296|FAM86A|protein_coding|CODING|ENST00000458008|2|1),INTRON(MODIFIER||||330|FAM86A|protein_coding|CODING|ENST00000427587|2|1),INTRON(MODIFIER|||||FAM86A|nonsense_mediated_decay|CODING|ENST00000585436|2|1),INTRON(MODIFIER|||||FAM86A|nonsense_mediated_decay|CODING|ENST00000587161|3|1),INTRON(MODIFIER|||||FAM86A|nonsense_mediated_decay|CODING|ENST00000587200|2|1),INTRON(MODIFIER|||||FAM86A|retained_intron|CODING|ENST00000585975|2|1),INTRON(MODIFIER|||||FAM86A|retained_intron|CODING|ENST00000586444|2|1),UPSTREAM(MODIFIER|||||FAM86A|retained_intron|CODING|ENST00000587608||1),UPSTREAM(MODIFIER|||||RP11-10K17.6|processed_transcript|NON_CODING|ENST00000589323||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	28:0:0:0:0,0:28,28:0,0:0,0	72:0:0:0:1,1:65,66:0,0:6,6
16	5646298	.	T	C	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||RP11-124K4.1|processed_transcript|NON_CODING|ENST00000566218||1),INTRON(MODIFIER|||||RP11-420N3.2|processed_transcript|NON_CODING|ENST00000569895|2|1),INTRON(MODIFIER|||||RP11-420N3.2|retained_intron|NON_CODING|ENST00000585867|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:0:0:0:0,0:0,0:0,0:40,40	68:1:0:0:0,0:6,6:0,0:61,62
16	6462460	.	C	A	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||261|RBFOX1|protein_coding|CODING|ENST00000547605|2|1),INTRON(MODIFIER||||370|RBFOX1|protein_coding|CODING|ENST00000553186|2|1),INTRON(MODIFIER||||397|RBFOX1|protein_coding|CODING|ENST00000550418|2|1),INTRON(MODIFIER||||425|RBFOX1|protein_coding|CODING|ENST00000422070|2|1),INTRON(MODIFIER||||466|RBFOX1|protein_coding|CODING|ENST00000547372|2|1),INTRON(MODIFIER|||||RBFOX1|processed_transcript|CODING|ENST00000548749|2|1),INTRON(MODIFIER|||||RP11-420N3.2|processed_transcript|NON_CODING|ENST00000569895|5|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:0:0:0:0,0:35,35:0,0:0,0	74:1:0:0:7,7:65,65:1,2:0,0
16	8613469	.	A	G	.	PASS	NT=ref;QSS=24;QSS_NT=24;SGT=AA->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	61:2:0:0:59,64:0,0:0,1:0,0	137:7:0:0:119,124:0,0:11,16:0,0
16	9048080	.	T	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1102|USP7|protein_coding|CODING|ENST00000344836|1|1),INTRON(MODIFIER||||116|USP7|protein_coding|CODING|ENST00000569230|1|1),INTRON(MODIFIER||||129|USP7|protein_coding|CODING|ENST00000566004|1|1),INTRON(MODIFIER||||158|USP7|protein_coding|CODING|ENST00000566273|1|1),INTRON(MODIFIER||||908|USP7|protein_coding|CODING|ENST00000563085|1|1),INTRON(MODIFIER|||||USP7|nonsense_mediated_decay|CODING|ENST00000563961|1|1),UPSTREAM(MODIFIER|||||USP7|nonsense_mediated_decay|CODING|ENST00000542333||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:0:0:0:0,0:0,0:0,0:29,30	65:3:0:0:0,0:8,8:1,2:53,62
16	9198978	.	A	G	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||RP11-473I1.5|antisense|NON_CODING|ENST00000565648||1),EXON(MODIFIER|||||RP11-473I1.9|sense_intronic|NON_CODING|ENST00000574285|1|1),INTRON(MODIFIER||||275|C16orf72|protein_coding|CODING|ENST00000327827|3|1),UPSTREAM(MODIFIER|||||RP11-473I1.10|sense_intronic|NON_CODING|ENST00000574616||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:1:0:0:32,33:0,0:0,0:0,0	70:0:0:0:65,65:0,0:5,5:0,0
16	10341678	.	C	G	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	42:4:0:0:0,0:38,42:0,0:0,0	63:6:0:0:0,0:52,58:5,5:0,0
16	11009986	.	C	T	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1130|CIITA|protein_coding|CODING|ENST00000324288|14|1),INTRON(MODIFIER||||546|CIITA|protein_coding|CODING|ENST00000381835|12|1),INTRON(MODIFIER|||||CIITA|processed_transcript|CODING|ENST00000572665|1|1),INTRON(MODIFIER|||||CIITA|retained_intron|CODING|ENST00000570546|13|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:0:0:0:0,0:39,39:0,0:0,0	77:0:0:0:0,0:67,67:0,0:10,10
16	11326615	.	T	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:2:0:0:0,0:1,1:0,0:34,36	80:3:0:0:0,0:0,0:4,5:73,78
16	11326620	.	T	G	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:1:0:0:0,0:1,1:0,0:35,36	83:2:0:0:0,0:0,1:6,6:75,79
16	11392675	.	T	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||84|RMI2|protein_coding|CODING|ENST00000572173|2|1),INTRON(MODIFIER|||||RMI2|retained_intron|CODING|ENST00000573910|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	28:1:0:0:0,0:0,0:0,0:27,28	70:0:0:0:0,0:8,8:0,0:62,63
16	11906219	.	G	C	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:0:0:0:0,0:0,0:33,33:1,1	67:0:0:0:0,0:7,7:60,61:0,0
16	12122441	.	A	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||SNX29|retained_intron|CODING|ENST00000568949||1),INTRON(MODIFIER||||375|SNX29|protein_coding|CODING|ENST00000268271|4|1),INTRON(MODIFIER||||813|SNX29|protein_coding|CODING|ENST00000566228|4|1),INTRON(MODIFIER|||||SNX29|nonsense_mediated_decay|CODING|ENST00000569801|4|1),INTRON(MODIFIER|||||SNX29|retained_intron|CODING|ENST00000564111|4|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:3:0:0:32,34:1,2:0,0:0,0	83:2:0:0:75,77:1,1:4,4:1,1
16	12211146	.	C	T	.	PASS	NT=ref;QSS=25;QSS_NT=25;SGT=CC->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER||||408|SNX29|protein_coding|CODING|ENST00000323433|4|1),INTRON(MODIFIER||||428|SNX29|protein_coding|CODING|ENST00000306030|4|1),INTRON(MODIFIER||||813|SNX29|protein_coding|CODING|ENST00000566228|11|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	58:3:0:0:0,0:55,63:0,0:0,0	97:2:0:0:1,2:88,103:0,0:6,6
16	13338903	.	G	T	.	PASS	NT=ref;QSS=23;QSS_NT=23;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||465|SHISA9|protein_coding|CODING|ENST00000558583||1),INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||U91319.1|lincRNA|NON_CODING|ENST00000571619||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	46:1:0:0:0,0:0,0:45,46:0,0	75:4:0:0:0,1:0,1:65,67:6,6
16	13671849	.	A	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:3:0:0:32,34:0,0:0,0:0,0	85:1:0:0:76,77:8,9:0,0:0,0
16	13812262	.	T	C	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:1:0:0:0,0:0,0:0,0:34,36	64:1:0:0:0,0:6,7:0,0:57,57
16	15066496	.	A	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=AA->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER||||119|PDXDC1|protein_coding|CODING|ENST00000563522||1),UPSTREAM(MODIFIER||||23|PDXDC1|protein_coding|CODING|ENST00000566426||1),UPSTREAM(MODIFIER||||270|PDXDC1|protein_coding|CODING|ENST00000567306||1),UPSTREAM(MODIFIER||||429|PDXDC1|protein_coding|CODING|ENST00000455313||1),UPSTREAM(MODIFIER||||498|PDXDC1|protein_coding|CODING|ENST00000535621||1),UPSTREAM(MODIFIER||||697|PDXDC1|protein_coding|CODING|ENST00000447912||1),UPSTREAM(MODIFIER||||760|PDXDC1|protein_coding|CODING|ENST00000450288||1),UPSTREAM(MODIFIER||||761|PDXDC1|protein_coding|CODING|ENST00000569715||1),UPSTREAM(MODIFIER||||773|PDXDC1|protein_coding|CODING|ENST00000325823||1),UPSTREAM(MODIFIER||||788|PDXDC1|protein_coding|CODING|ENST00000396410||1),UPSTREAM(MODIFIER||||806|PDXDC1|protein_coding|CODING|ENST00000563679||1),UPSTREAM(MODIFIER|||||PDXDC1|nonsense_mediated_decay|CODING|ENST00000562119||1),UPSTREAM(MODIFIER|||||PDXDC1|nonsense_mediated_decay|CODING|ENST00000565362||1),UPSTREAM(MODIFIER|||||PDXDC1|retained_intron|CODING|ENST00000570001||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	63:2:0:0:61,62:0,0:0,1:0,0	127:2:0:0:115,118:1,3:9,9:0,0
16	15269302	rs62038671	G	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=15269302;dbSNPBuildID=129;SSR=1;SAO=0;VP=050000000005000002000140;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:1:0:0:0,1:0,0:30,31:0,0	73:3:0:0:9,12:0,0:61,63:0,0
16	15448121	rs76884666	C	G	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=15448121;dbSNPBuildID=131;SSR=0;SAO=0;VP=050000000001040102000100;WGT=1;VC=SNV;VLD;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	25:2:0:0:0,0:23,29:0,0:0,0	58:1:0:0:0,1:47,49:10,12:0,0
16	16699918	rs71378265	A	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=AA->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=16699918;dbSNPBuildID=130;SSR=0;SAO=0;VP=050100000005000102000100;WGT=1;VC=SNV;SLO;ASP;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:0:0:0:38,39:0,0:0,1:0,0	81:0:0:0:71,71:0,0:10,14:0,0
16	17131912	.	G	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:1:0:0:0,0:0,0:30,31:0,0	89:0:0:0:0,0:0,0:81,81:8,8
16	18677894	rs144491886	G	A	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=18677894;GMAF=0.1708;dbSNPBuildID=134;SSR=0;SAO=0;VP=050000000005000016000100;WGT=1;VC=SNV;ASP;KGPhase1;KGPROD;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	17:0:0:0:0,0:0,0:17,17:0,0	35:0:0:0:9,9:0,0:26,26:0,0
16	19075976	rs192649518	C	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||613|TMC7|protein_coding|CODING|ENST00000421369||1),DOWNSTREAM(MODIFIER||||723|TMC7|protein_coding|CODING|ENST00000304381||1),DOWNSTREAM(MODIFIER||||758|TMC7|protein_coding|CODING|ENST00000569532||1),INTRON(MODIFIER|||||RP11-626G11.5|antisense|NON_CODING|ENST00000567047|1|1),INTRON(MODIFIER|||||RP11-626G11.5|antisense|NON_CODING|ENST00000568971|1|1),INTRON(MODIFIER|||||RP11-626G11.5|antisense|NON_CODING|ENST00000576433|1|1),INTRON(MODIFIER|||||RP11-626G11.5|processed_transcript|NON_CODING|ENST00000571934|1|1),UPSTREAM(MODIFIER||||102|COQ7|protein_coding|CODING|ENST00000566110||1),UPSTREAM(MODIFIER||||129|COQ7|protein_coding|CODING|ENST00000561858||1),UPSTREAM(MODIFIER||||179|COQ7|protein_coding|CODING|ENST00000544894||1),UPSTREAM(MODIFIER||||194|COQ7|protein_coding|CODING|ENST00000569127||1),UPSTREAM(MODIFIER||||217|COQ7|protein_coding|CODING|ENST00000321998||1),UPSTREAM(MODIFIER||||217|COQ7|protein_coding|CODING|ENST00000568985||1),UPSTREAM(MODIFIER|||||COQ7|nonsense_mediated_decay|CODING|ENST00000566049||1),UPSTREAM(MODIFIER|||||COQ7|nonsense_mediated_decay|CODING|ENST00000569312||1),UPSTREAM(MODIFIER|||||COQ7|retained_intron|CODING|ENST00000564746||1),UPSTREAM(MODIFIER|||||RP11-626G11.1|lincRNA|NON_CODING|ENST00000565802||1);RSPOS=19075976;GMAF=0.038;dbSNPBuildID=135;SSR=0;SAO=0;VP=050000000005000014000100;WGT=1;VC=SNV;ASP;KGPhase1;KGPROD	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	28:1:0:0:0,0:27,29:0,0:0,0	80:2:0:0:0,0:70,73:0,0:8,8
16	19075980	.	C	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||613|TMC7|protein_coding|CODING|ENST00000421369||1),DOWNSTREAM(MODIFIER||||723|TMC7|protein_coding|CODING|ENST00000304381||1),DOWNSTREAM(MODIFIER||||758|TMC7|protein_coding|CODING|ENST00000569532||1),INTRON(MODIFIER|||||RP11-626G11.5|antisense|NON_CODING|ENST00000567047|1|1),INTRON(MODIFIER|||||RP11-626G11.5|antisense|NON_CODING|ENST00000568971|1|1),INTRON(MODIFIER|||||RP11-626G11.5|antisense|NON_CODING|ENST00000576433|1|1),INTRON(MODIFIER|||||RP11-626G11.5|processed_transcript|NON_CODING|ENST00000571934|1|1),UPSTREAM(MODIFIER||||102|COQ7|protein_coding|CODING|ENST00000566110||1),UPSTREAM(MODIFIER||||129|COQ7|protein_coding|CODING|ENST00000561858||1),UPSTREAM(MODIFIER||||179|COQ7|protein_coding|CODING|ENST00000544894||1),UPSTREAM(MODIFIER||||194|COQ7|protein_coding|CODING|ENST00000569127||1),UPSTREAM(MODIFIER||||217|COQ7|protein_coding|CODING|ENST00000321998||1),UPSTREAM(MODIFIER||||217|COQ7|protein_coding|CODING|ENST00000568985||1),UPSTREAM(MODIFIER|||||COQ7|nonsense_mediated_decay|CODING|ENST00000566049||1),UPSTREAM(MODIFIER|||||COQ7|nonsense_mediated_decay|CODING|ENST00000569312||1),UPSTREAM(MODIFIER|||||COQ7|retained_intron|CODING|ENST00000564746||1),UPSTREAM(MODIFIER|||||RP11-626G11.1|lincRNA|NON_CODING|ENST00000565802||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:1:0:0:0,0:28,30:0,0:0,0	77:1:0:0:0,0:65,67:0,0:11,11
16	20219196	.	T	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||RP11-204E4.3|lincRNA|NON_CODING|ENST00000570859||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:1:0:0:0,0:0,0:0,0:30,32	81:1:0:0:0,0:7,7:0,0:73,74
16	21745183	rs71246381	C	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1060|OTOA|protein_coding|CODING|ENST00000388956|16|1),INTRON(MODIFIER||||1139|OTOA|protein_coding|CODING|ENST00000388958|20|1),INTRON(MODIFIER||||1153|OTOA|protein_coding|CODING|ENST00000286149|20|1),INTRON(MODIFIER||||815|OTOA|protein_coding|CODING|ENST00000388957|11|1),INTRON(MODIFIER|||||OTOA|retained_intron|CODING|ENST00000563506|1|1),INTRON(MODIFIER|||||OTOA|retained_intron|CODING|ENST00000563871|10|1);RSPOS=21745183;RV;dbSNPBuildID=130;SSR=0;SAO=0;VP=050100080001000102000100;GENEINFO=OTOA:146183;WGT=1;VC=SNV;SLO;INT;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:2:0:0:0,0:30,32:0,0:0,0	86:2:0:0:0,0:78,80:0,0:6,6
16	21844993	.	C	T	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||1138|RP11-645C24.1|protein_coding|CODING|ENST00000415645||1),DOWNSTREAM(MODIFIER||||420|RP11-645C24.1|protein_coding|CODING|ENST00000537951||1),DOWNSTREAM(MODIFIER||||848|RP11-645C24.1|protein_coding|CODING|ENST00000357370||1),DOWNSTREAM(MODIFIER||||992|RP11-645C24.1|protein_coding|CODING|ENST00000451409||1),DOWNSTREAM(MODIFIER|||||RP11-645C24.1|nonsense_mediated_decay|CODING|ENST00000542133||1),DOWNSTREAM(MODIFIER|||||RP11-645C24.1|processed_transcript|CODING|ENST00000165086||1),DOWNSTREAM(MODIFIER|||||RP11-645C24.1|processed_transcript|CODING|ENST00000541329||1),DOWNSTREAM(MODIFIER|||||RP11-645C24.1|retained_intron|CODING|ENST00000543660||1),DOWNSTREAM(MODIFIER|||||RP11-645C24.1|retained_intron|CODING|ENST00000545367||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	17:0:0:0:0,0:17,21:0,0:0,1	38:1:0:0:0,1:26,40:0,0:11,16
16	22424507	.	G	T	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||233|CDR2|protein_coding|CODING|ENST00000564542|3|1),INTRON(MODIFIER||||61|CDR2|protein_coding|CODING|ENST00000563573|3|1),INTRON(MODIFIER|||||CDR2|processed_transcript|CODING|ENST00000569045|5|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:1:0:0:0,0:0,0:30,31:0,0	71:5:0:0:0,0:0,0:54,57:12,14
16	24585506	.	T	G	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||1007|RBBP6|protein_coding|CODING|ENST00000564314||1),DOWNSTREAM(MODIFIER||||1758|RBBP6|protein_coding|CODING|ENST00000348022||1),DOWNSTREAM(MODIFIER||||1792|RBBP6|protein_coding|CODING|ENST00000319715||1),DOWNSTREAM(MODIFIER||||952|RBBP6|protein_coding|CODING|ENST00000381039||1),DOWNSTREAM(MODIFIER|||||RBBP6|retained_intron|CODING|ENST00000562430||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:1:0:0:0,0:0,0:0,0:31,36	63:4:0:0:0,0:0,1:6,8:53,62
16	25394331	.	T	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:0:0:0:0,0:0,0:0,0:31,31	77:1:0:0:0,0:8,8:0,0:68,69
16	25771108	.	A	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||456|HS3ST4|protein_coding|CODING|ENST00000331351|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:2:0:0:28,30:0,0:0,0:0,0	69:1:0:0:62,63:0,0:6,6:0,0
16	27589463	.	C	A	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||KIAA0556|retained_intron|CODING|ENST00000566023||1),INTRON(MODIFIER||||1618|KIAA0556|protein_coding|CODING|ENST00000261588|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	41:1:0:0:0,0:40,41:0,0:0,0	57:1:0:0:6,6:50,51:0,0:0,1
16	27725005	.	G	A	.	PASS	NT=ref;QSS=30;QSS_NT=30;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1618|KIAA0556|protein_coding|CODING|ENST00000261588|13|1),INTRON(MODIFIER|||||CTD-2049O4.1|antisense|NON_CODING|ENST00000563052|2|1),INTRON(MODIFIER|||||CTD-2049O4.1|antisense|NON_CODING|ENST00000564893|1|1),INTRON(MODIFIER|||||CTD-2049O4.1|antisense|NON_CODING|ENST00000568831|1|1),INTRON(MODIFIER|||||KIAA0556|processed_transcript|CODING|ENST00000567894|10|1),INTRON(MODIFIER|||||KIAA0556|retained_intron|CODING|ENST00000573850|4|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	65:5:0:0:0,0:0,0:60,66:0,2	133:9:0:0:6,6:0,0:118,130:0,0
16	27853461	rs2384816	C	T	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||176|GSG1L|protein_coding|CODING|ENST00000380897|3|1),INTRON(MODIFIER||||194|GSG1L|protein_coding|CODING|ENST00000380898|4|1),INTRON(MODIFIER||||194|GSG1L|protein_coding|CODING|ENST00000569166|2|1),INTRON(MODIFIER||||280|GSG1L|protein_coding|CODING|ENST00000395724|3|1),INTRON(MODIFIER||||331|GSG1L|protein_coding|CODING|ENST00000447459|4|1);RSPOS=27853461;dbSNPBuildID=100;SSR=0;SAO=0;VP=050100080001040002000100;GENEINFO=GSG1L:146395;WGT=1;VC=SNV;SLO;INT;VLD;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	51:0:0:0:0,0:50,50:0,0:1,1	84:3:0:0:0,0:70,74:0,0:11,12
16	28388098	.	G	A	.	PASS	NT=ref;QSS=23;QSS_NT=23;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||914|EIF3CL|protein_coding|CODING|ENST00000380876||1),DOWNSTREAM(MODIFIER||||914|EIF3CL|protein_coding|CODING|ENST00000398943||1),DOWNSTREAM(MODIFIER||||914|EIF3CL|protein_coding|CODING|ENST00000398944||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	23:0:0:0:0,0:0,0:23,23:0,0	37:1:0:0:8,11:1,1:27,30:0,0
16	28388163	rs11646561	T	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||914|EIF3CL|protein_coding|CODING|ENST00000380876||1),DOWNSTREAM(MODIFIER||||914|EIF3CL|protein_coding|CODING|ENST00000398943||1),DOWNSTREAM(MODIFIER||||914|EIF3CL|protein_coding|CODING|ENST00000398944||1),INTERGENIC(MODIFIER||||||||||1);RSPOS=28388163;RV;GMAF=0.158;dbSNPBuildID=120;SSR=0;SAO=0;VP=050000000005040016000100;WGT=1;VC=SNV;ASP;VLD;KGPhase1;KGPROD;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	17:1:0:0:0,0:0,0:0,0:16,17	38:0:0:0:0,0:7,8:0,0:31,33
16	28561914	.	T	C	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER||||293|CCDC101|protein_coding|CODING|ENST00000317058||1),UPSTREAM(MODIFIER|||||CCDC101|nonsense_mediated_decay|CODING|ENST00000567564||1),UPSTREAM(MODIFIER|||||CCDC101|retained_intron|CODING|ENST00000564682||1),UPSTREAM(MODIFIER|||||CCDC101|retained_intron|CODING|ENST00000569581||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	41:5:0:0:0,0:0,0:0,0:36,48	69:4:0:0:0,0:6,9:0,0:59,82
16	28910073	rs113332351	A	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||ATP2A1|nonsense_mediated_decay|CODING|ENST00000564470||1),DOWNSTREAM(MODIFIER|||||ATP2A1|processed_transcript|CODING|ENST00000565042||1),INTRON(MODIFIER||||1001|ATP2A1|protein_coding|CODING|ENST00000357084|14|1),INTRON(MODIFIER||||869|ATP2A1|protein_coding|CODING|ENST00000536376|12|1),INTRON(MODIFIER||||994|ATP2A1|protein_coding|CODING|ENST00000395503|14|1);RSPOS=28910073;dbSNPBuildID=132;SSR=0;SAO=0;VP=050000080011000002000100;GENEINFO=ATP2A1:487;WGT=1;VC=SNV;INT;OTH;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:0:0:0:36,36:0,0:0,0:0,0	76:1:0:0:71,71:0,1:0,0:4,4
16	29056925	.	G	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||431|CTB-134H23.2|protein_coding|CODING|ENST00000424293|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	16:0:0:0:0,0:0,0:16,22:0,0	22:0:0:0:5,6:0,0:16,32:1,1
16	29629634	.	A	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||CA5AP1|unprocessed_pseudogene|NON_CODING|ENST00000568175||1),INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||RP11-368N21.2|unprocessed_pseudogene|NON_CODING|ENST00000568957||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	28:0:0:0:28,28:0,0:0,0:0,0	70:0:0:0:64,64:0,0:6,6:0,0
16	29651479	.	A	G	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||CA5AP1|unprocessed_pseudogene|NON_CODING|ENST00000568175||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:2:0:0:37,39:0,0:0,0:0,0	81:2:0:0:74,77:0,0:5,6:0,0
16	30511881	.	T	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||ITGAL|processed_transcript|CODING|ENST00000568012||1),INTRON(MODIFIER||||1086|ITGAL|protein_coding|CODING|ENST00000358164|15|1),INTRON(MODIFIER||||1170|ITGAL|protein_coding|CODING|ENST00000356798|17|1),INTRON(MODIFIER||||404|ITGAL|protein_coding|CODING|ENST00000433423|4|1),INTRON(MODIFIER|||||ITGAL|nonsense_mediated_decay|CODING|ENST00000568926|3|1),INTRON(MODIFIER|||||ITGAL|retained_intron|CODING|ENST00000568987|2|1),UPSTREAM(MODIFIER|||||ITGAL|retained_intron|CODING|ENST00000562020||1),UPSTREAM(MODIFIER|||||MIR4518|miRNA|NON_CODING|ENST00000580665||1),UPSTREAM(MODIFIER|||||RP11-297C4.1|antisense|NON_CODING|ENST00000563751||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:1:0:0:0,0:0,0:0,0:29,30	64:1:0:0:6,6:0,0:0,0:57,58
16	30513333	.	A	G	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1086|ITGAL|protein_coding|CODING|ENST00000358164|15|1),INTRON(MODIFIER||||1170|ITGAL|protein_coding|CODING|ENST00000356798|17|1),INTRON(MODIFIER||||404|ITGAL|protein_coding|CODING|ENST00000433423|4|1),INTRON(MODIFIER|||||ITGAL|nonsense_mediated_decay|CODING|ENST00000568926|3|1),INTRON(MODIFIER|||||ITGAL|retained_intron|CODING|ENST00000568987|2|1),UPSTREAM(MODIFIER|||||ITGAL|retained_intron|CODING|ENST00000562020||1),UPSTREAM(MODIFIER|||||MIR4518|miRNA|NON_CODING|ENST00000580665||1),UPSTREAM(MODIFIER|||||RP11-297C4.1|antisense|NON_CODING|ENST00000563751||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:0:0:0:35,35:0,0:0,0:0,0	65:0:0:0:58,58:0,0:7,7:0,0
16	30730051	.	T	C	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||3072|SRCAP|protein_coding|CODING|ENST00000344771|18|1),INTRON(MODIFIER||||3168|SRCAP|protein_coding|CODING|ENST00000395059|18|1),INTRON(MODIFIER||||3230|SRCAP|protein_coding|CODING|ENST00000262518|18|1),INTRON(MODIFIER|||||SRCAP|nonsense_mediated_decay|CODING|ENST00000380361|15|1),INTRON(MODIFIER|||||SRCAP|retained_intron|CODING|ENST00000483083|11|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:0:0:0:0,0:0,0:0,0:34,34	69:1:0:0:0,0:7,8:0,0:61,61
16	30730054	.	T	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||3072|SRCAP|protein_coding|CODING|ENST00000344771|18|1),INTRON(MODIFIER||||3168|SRCAP|protein_coding|CODING|ENST00000395059|18|1),INTRON(MODIFIER||||3230|SRCAP|protein_coding|CODING|ENST00000262518|18|1),INTRON(MODIFIER|||||SRCAP|nonsense_mediated_decay|CODING|ENST00000380361|15|1),INTRON(MODIFIER|||||SRCAP|retained_intron|CODING|ENST00000483083|11|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:0:0:0:0,0:0,0:0,0:33,33	68:1:0:0:5,5:1,1:0,1:61,61
16	31052580	.	T	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||295|STX4|protein_coding|CODING|ENST00000394998||1),DOWNSTREAM(MODIFIER||||297|STX4|protein_coding|CODING|ENST00000313843||1),DOWNSTREAM(MODIFIER|||||STX4|nonsense_mediated_decay|CODING|ENST00000460668||1),DOWNSTREAM(MODIFIER|||||STX4|nonsense_mediated_decay|CODING|ENST00000496977||1),DOWNSTREAM(MODIFIER|||||STX4|processed_transcript|CODING|ENST00000493902||1),DOWNSTREAM(MODIFIER|||||STX4|processed_transcript|CODING|ENST00000564368||1),DOWNSTREAM(MODIFIER|||||STX4|retained_intron|CODING|ENST00000468583||1),DOWNSTREAM(MODIFIER|||||STX4|retained_intron|CODING|ENST00000475862||1),DOWNSTREAM(MODIFIER|||||STX4|retained_intron|CODING|ENST00000486660||1),DOWNSTREAM(MODIFIER|||||STX4|retained_intron|CODING|ENST00000487411||1),INTRON(MODIFIER|||||STX4|processed_transcript|CODING|ENST00000503629|3|1),UPSTREAM(MODIFIER|||||RP11-196G11.2|lincRNA|NON_CODING|ENST00000570266||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	41:2:0:0:0,0:0,0:0,0:39,41	93:1:0:0:0,0:6,7:1,1:85,88
16	31613104	.	A	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=EXON(MODIFIER|||||ZNF720P1|processed_pseudogene|NON_CODING|ENST00000562403|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:1:0:0:35,36:0,0:0,0:0,0	73:1:0:0:65,65:0,0:0,1:7,8
16	32117957	.	T	C	.	PASS	NT=ref;QSS=33;QSS_NT=33;SGT=TT->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER|||||RP11-1166P10.8|3prime_overlapping_ncrna|NON_CODING|ENST00000564145|4|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	77:3:0:0:0,0:0,2:0,0:74,93	205:5:0:0:0,0:12,15:0,0:188,227
16	32139281	.	A	G	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=AA->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER|||||RP11-1166P10.8|3prime_overlapping_ncrna|NON_CODING|ENST00000564145|1|1),UPSTREAM(MODIFIER|||||RP11-1166P10.9|lincRNA|NON_CODING|ENST00000568083||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	62:1:0:0:61,89:0,0:0,3:0,0	134:3:0:0:123,177:0,0:6,10:2,2
16	32300033	.	G	A	.	PASS	NT=ref;QSS=26;QSS_NT=26;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||RP11-17M15.2|processed_transcript|NON_CODING|ENST00000568567||1),DOWNSTREAM(MODIFIER|||||RP11-17M15.2|transcribed_processed_pseudogene|NON_CODING|ENST00000562267||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	26:2:0:0:0,0:0,0:24,29:0,0	64:1:0:0:14,16:0,0:49,54:0,0
16	32310460	rs201191713	A	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-17M15.2|processed_transcript|NON_CODING|ENST00000568567|3|1);RSPOS=32310460;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	16:1:0:0:15,17:0,0:0,0:0,0	60:1:0:0:46,49:1,1:0,0:12,14
16	32323636	.	G	C	.	PASS	NT=ref;QSS=30;QSS_NT=30;SGT=GG->CG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||RP11-17M15.2|processed_transcript|NON_CODING|ENST00000568567||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	24:0:0:0:0,0:0,0:24,25:0,0	79:1:0:0:0,0:22,23:56,66:0,0
16	32355484	.	A	G	.	PASS	NT=ref;QSS=25;QSS_NT=25;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	55:0:0:0:55,56:0,0:0,0:0,0	121:1:0:0:111,114:0,0:9,9:0,0
16	32359209	.	G	A	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=GG->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	56:1:0:0:0,1:0,0:55,56:0,0	104:2:0:0:6,7:0,0:96,101:0,0
16	32359310	.	T	C	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:0:0:0:0,0:0,0:0,0:38,38	88:1:0:0:0,0:9,9:0,1:78,82
16	32359317	.	C	T	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:0:0:0:0,0:37,37:0,0:0,0	88:1:0:0:0,0:79,84:0,0:8,8
16	32402983	.	T	G	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=TT->GT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER|||||RP11-626K17.5|unprocessed_pseudogene|NON_CODING|ENST00000562908|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	56:1:0:0:0,0:0,0:0,1:55,59	125:2:0:0:0,0:0,0:8,13:115,119
16	32428679	.	G	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-626K17.5|unprocessed_pseudogene|NON_CODING|ENST00000562908|4|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	55:1:0:0:1,1:0,0:53,57:0,0	118:0:0:0:6,8:0,0:112,114:0,0
16	32429187	.	A	G	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-626K17.5|unprocessed_pseudogene|NON_CODING|ENST00000562908|4|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	57:0:0:0:57,62:0,0:0,0:0,0	115:0:0:0:106,114:3,3:6,7:0,0
16	32429194	.	G	A	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-626K17.5|unprocessed_pseudogene|NON_CODING|ENST00000562908|4|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	60:0:0:0:0,0:0,0:60,65:0,0	112:0:0:0:6,7:0,0:106,114:0,0
16	32435160	.	C	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER|||||RP11-626K17.5|unprocessed_pseudogene|NON_CODING|ENST00000562908|4|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	69:2:0:0:2,4:65,71:0,0:0,2	154:1:0:0:3,5:141,144:0,0:9,11
16	32435184	.	T	G	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=TT->GT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER|||||RP11-626K17.5|unprocessed_pseudogene|NON_CODING|ENST00000562908|4|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	65:0:0:0:0,0:0,0:0,1:65,71	153:1:0:0:0,0:0,0:7,9:145,150
16	32473277	.	A	G	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||RP11-626K17.2|processed_pseudogene|NON_CODING|ENST00000569776||1),UPSTREAM(MODIFIER|||||RP11-626K17.3|lincRNA|NON_CODING|ENST00000565549||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	54:4:0:0:50,60:0,0:0,1:0,0	109:2:0:0:102,109:0,0:5,8:0,0
16	32490592	.	T	C	.	PASS	NT=ref;QSS=29;QSS_NT=29;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||ABCD1P3|unprocessed_pseudogene|NON_CODING|ENST00000562927||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	64:0:0:0:0,0:0,0:1,1:63,78	157:7:0:0:0,1:10,14:0,0:140,176
16	32602509	.	C	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	72:24:0:0:0,0:47,73:0,0:1,1	169:59:0:0:0,0:104,164:0,0:6,7
16	32818719	.	C	A	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||RP11-67H24.1|processed_pseudogene|NON_CODING|ENST00000561729||1),INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||RP11-67H24.2|lincRNA|NON_CODING|ENST00000569859||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	44:2:0:0:0,0:42,49:0,0:0,0	101:2:0:0:5,7:93,107:0,0:1,1
16	32820311	.	T	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=DOWNSTREAM(MODIFIER|||||RP11-67H24.1|processed_pseudogene|NON_CODING|ENST00000561729||1),INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||RP11-67H24.2|lincRNA|NON_CODING|ENST00000569859||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	44:1:0:0:0,0:0,3:0,0:43,60	92:1:0:0:0,0:6,16:0,0:85,99
16	32820324	.	C	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=DOWNSTREAM(MODIFIER|||||RP11-67H24.1|processed_pseudogene|NON_CODING|ENST00000561729||1),INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||RP11-67H24.2|lincRNA|NON_CODING|ENST00000569859||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	42:1:0:0:0,0:41,61:0,0:0,3	92:3:0:0:0,0:83,100:0,0:6,20
16	32821031	rs112073625	C	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||RP11-67H24.1|processed_pseudogene|NON_CODING|ENST00000561729||1),INTRON(MODIFIER|||||RP11-67H24.2|lincRNA|NON_CODING|ENST00000569859|1|1);RSPOS=32821031;dbSNPBuildID=132;SSR=0;SAO=0;VP=050100000005000102000100;WGT=1;VC=SNV;SLO;ASP;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:3:0:0:0,0:26,28:0,1:0,1	76:4:0:0:1,1:63,64:0,5:8,14
16	32826825	rs201147252	C	A	.	PASS	NT=ref;QSS=24;QSS_NT=24;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-67H24.2|lincRNA|NON_CODING|ENST00000569859|3|1),UPSTREAM(MODIFIER|||||RP11-67H24.1|processed_pseudogene|NON_CODING|ENST00000561729||1);RSPOS=32826825;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	50:0:0:0:0,0:50,59:0,0:0,0	127:0:0:0:9,13:118,148:0,0:0,0
16	32834095	.	T	G	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-67H24.2|lincRNA|NON_CODING|ENST00000569859|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	52:2:0:0:0,0:0,0:1,1:49,70	125:2:0:0:0,1:0,0:8,11:115,150
16	32835040	.	A	T	.	PASS	NT=ref;QSS=26;QSS_NT=26;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-67H24.2|lincRNA|NON_CODING|ENST00000569859|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	53:1:0:0:52,64:0,0:0,1:0,0	115:3:1:0:104,138:1,1:0,0:7,9
16	32836966	.	T	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||RP11-67H24.2|lincRNA|NON_CODING|ENST00000569859||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:1:0:0:0,0:0,0:0,0:32,47	120:0:0:0:0,0:7,7:0,0:113,134
16	32838422	.	C	T	.	PASS	NT=ref;QSS=24;QSS_NT=24;SGT=CC->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=DOWNSTREAM(MODIFIER|||||RP11-67H24.2|lincRNA|NON_CODING|ENST00000569859||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	90:1:0:0:0,0:89,108:0,0:0,3	198:3:0:0:0,0:181,221:0,0:14,15
16	32839154	rs199809693	G	A	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||RP11-67H24.2|lincRNA|NON_CODING|ENST00000569859||1),INTERGENIC(MODIFIER||||||||||1);RSPOS=32839154;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	85:2:0:0:1,1:1,1:81,94:0,0	207:4:0:0:11,15:0,0:192,227:0,0
16	32841908	rs200399632	A	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=32841908;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	43:0:0:0:43,48:0,0:0,1:0,0	142:7:0:0:128,144:0,0:7,7:0,0
16	32842502	.	G	A	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	88:1:0:0:1,2:0,0:85,108:1,1	221:0:0:0:13,15:1,1:206,253:1,1
16	32842623	.	C	T	.	PASS	NT=ref;QSS=37;QSS_NT=37;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	80:1:0:0:1,1:78,95:0,0:0,0	158:2:0:0:0,0:149,187:0,0:7,10
16	32850000	rs78916745	C	T	.	PASS	NT=ref;QSS=23;QSS_NT=23;SGT=CC->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=32850000;dbSNPBuildID=131;SSR=0;SAO=0;VP=050000000009000102000100;WGT=1;VC=SNV;CFL;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	85:3:0:0:0,0:81,114:0,1:1,5	238:6:0:0:0,0:222,279:1,1:9,12
16	33038995	.	G	A	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=EXON(MODIFIER|||||RP11-19N8.2|processed_transcript|NON_CODING|ENST00000567619|1|1),EXON(MODIFIER|||||RP11-19N8.2|transcribed_processed_pseudogene|NON_CODING|ENST00000562500|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	71:15:0:0:1,3:1,1:54,77:0,0	119:12:0:0:9,11:0,0:98,129:0,0
16	33052169	.	C	G	.	PASS	NT=ref;QSS=25;QSS_NT=25;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||RP11-19N8.4|lincRNA|NON_CODING|ENST00000561541||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	76:4:0:0:0,1:72,84:0,1:0,0	163:2:0:0:1,1:152,185:8,10:0,0
16	33052453	.	C	T	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=CC->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=DOWNSTREAM(MODIFIER|||||RP11-19N8.4|lincRNA|NON_CODING|ENST00000561541||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	97:2:0:0:0,0:94,121:0,0:1,2	192:4:0:0:0,1:173,245:0,0:15,18
16	33056674	.	T	G	.	PASS	NT=ref;QSS=23;QSS_NT=23;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||RP11-19N8.4|lincRNA|NON_CODING|ENST00000564165||1),INTRON(MODIFIER|||||RP11-19N8.4|lincRNA|NON_CODING|ENST00000561541|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	44:0:0:0:0,0:0,0:0,1:44,55	90:0:0:0:0,0:0,0:10,12:80,105
16	33063618	.	G	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-19N8.4|lincRNA|NON_CODING|ENST00000561541|1|1),INTRON(MODIFIER|||||RP11-19N8.4|lincRNA|NON_CODING|ENST00000564165|4|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:1:0:0:0,1:0,0:37,51:0,0	117:2:0:0:7,9:0,0:108,130:0,1
16	33063628	.	G	A	.	PASS	NT=ref;QSS=23;QSS_NT=23;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-19N8.4|lincRNA|NON_CODING|ENST00000561541|1|1),INTRON(MODIFIER|||||RP11-19N8.4|lincRNA|NON_CODING|ENST00000564165|4|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	47:1:0:0:0,1:0,0:46,59:0,0	117:1:0:0:7,9:0,0:109,133:0,0
16	33065354	.	A	T	.	PASS	NT=ref;QSS=24;QSS_NT=24;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-19N8.4|lincRNA|NON_CODING|ENST00000561541|1|1),INTRON(MODIFIER|||||RP11-19N8.4|lincRNA|NON_CODING|ENST00000564165|4|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	80:4:0:0:75,97:0,1:0,0:1,2	129:2:0:0:121,156:0,0:0,0:6,12
16	33071139	.	A	G	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-19N8.4|lincRNA|NON_CODING|ENST00000561541|1|1),INTRON(MODIFIER|||||RP11-19N8.4|lincRNA|NON_CODING|ENST00000564165|4|1),UPSTREAM(MODIFIER|||||RP11-19N8.3|processed_pseudogene|NON_CODING|ENST00000569033||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	43:1:0:0:41,44:1,2:0,0:0,0	73:3:0:0:64,68:0,0:6,10:0,0
16	33295116	rs113693940	G	A	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||RP11-23E10.5|processed_pseudogene|NON_CODING|ENST00000573021||1),INTERGENIC(MODIFIER||||||||||1);RSPOS=33295116;dbSNPBuildID=132;SSR=0;SAO=0;VP=050000000001040102000100;WGT=1;VC=SNV;VLD;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	27:1:0:0:0,2:0,0:26,31:0,0	64:2:0:0:10,20:0,0:52,60:0,0
16	33295122	rs113073736	G	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||RP11-23E10.5|processed_pseudogene|NON_CODING|ENST00000573021||1),INTERGENIC(MODIFIER||||||||||1);RSPOS=33295122;dbSNPBuildID=132;SSR=0;SAO=0;VP=050000000001040102000100;WGT=1;VC=SNV;VLD;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	26:1:0:0:0,1:0,1:25,29:0,0	66:3:0:0:9,18:0,0:54,60:0,0
16	33319840	.	G	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	17:1:0:0:0,0:0,0:16,20:0,1	31:2:0:0:6,6:0,0:23,29:0,0
16	33361329	.	C	T	.	PASS	NT=ref;QSS=34;QSS_NT=34;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||RP11-23E10.4|processed_transcript|NON_CODING|ENST00000568520||1),DOWNSTREAM(MODIFIER|||||RP11-23E10.4|transcribed_unprocessed_pseudogene|NON_CODING|ENST00000567422||1),INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||RP11-23E10.2|lincRNA|NON_CODING|ENST00000568893||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	71:1:0:0:0,0:70,74:0,0:0,0	133:3:0:0:0,0:122,132:0,0:8,10
16	33361387	.	T	G	.	PASS	NT=ref;QSS=33;QSS_NT=33;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||RP11-23E10.4|processed_transcript|NON_CODING|ENST00000568520||1),DOWNSTREAM(MODIFIER|||||RP11-23E10.4|transcribed_unprocessed_pseudogene|NON_CODING|ENST00000567422||1),INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||RP11-23E10.2|lincRNA|NON_CODING|ENST00000568893||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	68:1:0:0:0,0:0,0:0,0:67,71	150:1:0:0:0,0:0,0:10,13:139,146
16	33395979	.	G	T	.	PASS	NT=ref;QSS=30;QSS_NT=30;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=EXON(MODIFIER|||||RP11-293B20.2|unprocessed_pseudogene|NON_CODING|ENST00000566346|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	62:2:0:0:0,0:0,1:60,61:0,0	143:2:0:0:0,0:0,0:131,133:10,10
16	33518817	.	G	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	93:0:0:0:0,0:0,0:92,127:1,1	217:2:0:0:0,0:0,1:206,283:9,14
16	33522194	.	G	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	85:1:0:0:0,1:0,0:84,95:0,0	207:8:0:0:9,12:0,0:190,232:0,1
16	33524172	rs201796626	T	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=TT->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=33524172;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	44:1:0:0:0,0:0,2:0,0:43,60	111:3:0:0:0,0:7,14:0,0:101,142
16	33618983	.	C	G	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:1:0:0:0,0:34,35:0,0:0,0	88:1:0:0:0,0:81,82:6,6:0,0
16	33846090	.	A	G	.	PASS	NT=ref;QSS=28;QSS_NT=28;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-598D12.2|unprocessed_pseudogene|NON_CODING|ENST00000566112|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	57:0:0:0:57,72:0,0:0,0:0,0	118:4:0:0:107,132:0,0:7,7:0,0
16	33847051	rs76777846	G	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-598D12.2|unprocessed_pseudogene|NON_CODING|ENST00000566112|1|1);RSPOS=33847051;dbSNPBuildID=131;SSR=0;SAO=0;VP=050000000001000102000100;WGT=1;VC=SNV;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	80:2:0:0:0,0:1,1:77,113:0,0	137:2:0:0:0,0:6,9:129,173:0,0
16	33868369	.	G	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	99:13:1:0:0,3:0,4:86,223:0,0	251:30:1:0:8,18:0,2:210,504:3,4
16	33909358	.	A	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:5:0:0:33,94:0,1:0,0:0,0	131:17:0:0:108,195:6,10:0,0:0,2
16	33926245	rs77087445	A	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||CTD-2522B17.8|processed_pseudogene|NON_CODING|ENST00000574771||1),INTERGENIC(MODIFIER||||||||||1);RSPOS=33926245;dbSNPBuildID=131;SSR=0;SAO=0;VP=050000000001000102000100;WGT=1;VC=SNV;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	52:1:0:0:51,64:0,0:0,0:0,1	111:3:0:0:103,124:0,0:0,0:5,17
16	33942732	rs77093574	A	T	.	PASS	NT=ref;QSS=24;QSS_NT=24;SGT=AA->AT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=DOWNSTREAM(MODIFIER|||||AC136932.2|miRNA|NON_CODING|ENST00000583871||1),DOWNSTREAM(MODIFIER|||||CTD-2522B17.4|processed_pseudogene|NON_CODING|ENST00000566845||1),DOWNSTREAM(MODIFIER|||||PCMTD1P2|processed_pseudogene|NON_CODING|ENST00000565017||1),INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||CTD-2522B17.5|processed_pseudogene|NON_CODING|ENST00000566406||1),UPSTREAM(MODIFIER|||||CTD-2522B17.6|processed_pseudogene|NON_CODING|ENST00000566374||1);RSPOS=33942732;dbSNPBuildID=131;SSR=0;SAO=0;VP=050000000001000102000100;WGT=1;VC=SNV;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	73:1:0:0:72,95:0,0:0,0:0,0	138:2:0:0:130,169:0,0:0,1:6,7
16	33942742	.	A	G	.	PASS	NT=ref;QSS=24;QSS_NT=24;SGT=AA->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=DOWNSTREAM(MODIFIER|||||AC136932.2|miRNA|NON_CODING|ENST00000583871||1),DOWNSTREAM(MODIFIER|||||CTD-2522B17.4|processed_pseudogene|NON_CODING|ENST00000566845||1),DOWNSTREAM(MODIFIER|||||PCMTD1P2|processed_pseudogene|NON_CODING|ENST00000565017||1),INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||CTD-2522B17.5|processed_pseudogene|NON_CODING|ENST00000566406||1),UPSTREAM(MODIFIER|||||CTD-2522B17.6|processed_pseudogene|NON_CODING|ENST00000566374||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	76:2:0:0:73,97:1,2:0,0:0,0	142:2:0:0:132,168:2,3:6,7:0,0
16	33949514	.	G	A	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||CTD-2522B17.6|processed_pseudogene|NON_CODING|ENST00000566374||1),DOWNSTREAM(MODIFIER|||||LINC00273|lincRNA|NON_CODING|ENST00000567668||1),INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||AC136932.2|miRNA|NON_CODING|ENST00000583871||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	45:4:0:0:0,0:0,0:41,57:0,0	87:6:0:0:6,6:0,0:75,92:0,0
16	33963490	rs74552546	T	C	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=TT->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=DOWNSTREAM(MODIFIER|||||AC136932.1|miRNA|NON_CODING|ENST00000385251||1),INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER||||462|LINC00273|protein_coding|CODING|ENST00000539813||1),UPSTREAM(MODIFIER|||||RNA5-8SP2|rRNA|NON_CODING|ENST00000363564||1);RSPOS=33963490;dbSNPBuildID=131;SSR=0;SAO=0;VP=050100000005000102000100;WGT=1;VC=SNV;SLO;ASP;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	51:3:0:0:0,0:0,1:0,0:48,59	127:3:0:0:1,1:7,12:1,1:115,132
16	34008845	.	A	G	.	PASS	NT=ref;QSS=23;QSS_NT=23;SGT=AA->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	54:2:0:0:52,71:0,0:0,1:0,0	175:2:0:0:163,198:0,1:8,13:2,8
16	34178874	.	A	G	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	41:2:0:0:39,45:0,0:0,0:0,0	94:1:0:0:88,102:0,0:5,7:0,0
16	34178911	rs200589537	C	G	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=34178911;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	44:1:0:0:1,1:42,49:0,0:0,1	113:2:0:0:3,3:102,113:6,7:0,0
16	34726850	.	C	T	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||RP11-80F22.4|lincRNA|NON_CODING|ENST00000567902||1),DOWNSTREAM(MODIFIER|||||RP11-80F22.5|processed_pseudogene|NON_CODING|ENST00000569213||1),EXON(MODIFIER|||||RP11-80F22.6|processed_pseudogene|NON_CODING|ENST00000562032|1|1),UPSTREAM(MODIFIER|||||RP11-80F22.14|lincRNA|NON_CODING|ENST00000566562||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:0:0:0:0,0:36,37:0,0:0,0	74:1:0:0:0,0:63,64:0,0:10,10
16	34983264	.	G	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||RNA5SP410|rRNA|NON_CODING|ENST00000516285||1),DOWNSTREAM(MODIFIER|||||RNA5SP411|rRNA|NON_CODING|ENST00000516136||1),DOWNSTREAM(MODIFIER|||||RNA5SP412|rRNA|NON_CODING|ENST00000516234||1),DOWNSTREAM(MODIFIER|||||RNA5SP413|rRNA|NON_CODING|ENST00000516373||1),DOWNSTREAM(MODIFIER|||||RNA5SP414|rRNA|NON_CODING|ENST00000516580||1),INTRON(MODIFIER|||||RP11-352B15.1|lincRNA|NON_CODING|ENST00000562769|3|1),INTRON(MODIFIER|||||RP11-352B15.1|lincRNA|NON_CODING|ENST00000565625|2|1),INTRON(MODIFIER|||||RP11-352B15.1|lincRNA|NON_CODING|ENST00000566900|2|1),UPSTREAM(MODIFIER|||||RNA5SP415|rRNA|NON_CODING|ENST00000517246||1),UPSTREAM(MODIFIER|||||RNA5SP416|rRNA|NON_CODING|ENST00000516838||1),UPSTREAM(MODIFIER|||||RNA5SP417|rRNA|NON_CODING|ENST00000516459||1),UPSTREAM(MODIFIER|||||RNA5SP418|rRNA|NON_CODING|ENST00000515951||1),UPSTREAM(MODIFIER|||||RNA5SP419|rRNA|NON_CODING|ENST00000515908||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:2:0:0:0,0:0,0:28,30:0,0	66:1:0:0:4,4:1,1:60,61:0,0
16	35227419	.	G	T	.	PASS	NT=ref;QSS=23;QSS_NT=23;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	53:6:0:0:0,1:0,0:47,65:0,1	92:13:0:0:0,2:0,0:73,104:6,15
16	35236415	.	G	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	61:6:0:0:0,5:0,1:55,158:0,1	121:12:0:0:5,11:0,0:104,311:0,6
16	35260264	.	A	G	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:2:0:0:37,45:0,0:0,0:0,0	85:7:0:0:72,94:0,0:6,6:0,0
16	35281381	rs201949619	T	G	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=35281381;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	56:12:0:0:0,0:0,5:0,2:44,95	133:36:0:0:0,0:0,8:6,13:91,211
16	35281401	.	G	A	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	55:10:0:0:0,2:0,0:45,97:0,0	123:13:0:0:6,14:0,1:102,194:2,3
16	46422499	.	A	T	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=AA->AT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	70:7:0:0:61,141:1,3:0,0:1,2	148:13:0:0:126,271:0,0:0,1:9,16
16	46436678	.	C	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	26:1:0:0:0,1:25,30:0,0:0,0	66:6:0:0:8,16:52,65:0,0:0,0
16	46441047	.	G	A	.	PASS	NT=ref;QSS=39;QSS_NT=39;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	98:17:5:0:0,2:0,0:81,180:0,0	204:30:2:0:11,25:0,0:163,347:0,1
16	46441050	.	T	A	.	PASS	NT=ref;QSS=31;QSS_NT=31;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	97:17:0:0:1,3:0,2:0,1:79,178	200:26:0:0:10,12:0,1:1,1:163,356
16	46441092	.	T	A	.	PASS	NT=ref;QSS=26;QSS_NT=26;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	65:12:0:0:0,0:0,0:0,0:53,92	135:22:2:0:8,10:0,0:0,1:105,178
16	46450788	.	A	T	.	PASS	NT=ref;QSS=32;QSS_NT=32;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	81:17:0:0:64,107:0,0:0,0:0,1	216:42:0:0:163,271:0,0:0,1:11,16
16	46457964	.	C	T	.	PASS	NT=ref;QSS=23;QSS_NT=23;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	100:3:0:0:0,0:96,121:0,0:1,2	191:1:0:0:0,0:176,226:0,0:14,18
16	46461828	.	T	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:1:0:0:0,0:0,0:2,3:27,27	79:2:0:0:6,11:0,0:0,0:71,73
16	46465399	.	A	G	.	PASS	NT=ref;QSS=27;QSS_NT=27;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	58:3:0:0:55,66:0,0:0,0:0,0	133:1:0:0:121,129:0,0:11,17:0,0
16	46472402	.	A	C	.	PASS	NT=ref;QSS=42;QSS_NT=42;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	91:1:0:0:90,119:0,1:0,0:0,0	231:5:0:0:214,263:11,16:0,0:1,1
16	46473565	.	G	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->CG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:2:0:0:0,0:0,0:38,46:0,0	82:2:0:0:1,1:4,4:74,90:1,1
16	46474432	.	C	A	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:1:0:0:0,0:38,47:0,0:0,0	120:1:0:0:7,9:112,138:0,0:0,0
16	46474457	.	T	C	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	42:1:0:0:0,0:0,0:0,0:41,51	115:0:0:0:1,3:6,7:0,0:108,131
16	46479883	rs76658432	A	C	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=46479883;dbSNPBuildID=131;SSR=0;SAO=0;VP=050100000005040102000100;WGT=1;VC=SNV;SLO;ASP;VLD;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:0:0:0:38,40:0,0:0,0:0,0	118:0:0:0:103,106:14,21:0,0:1,1
16	46479893	rs112331526	T	G	.	PASS	NT=ref;QSS=23;QSS_NT=23;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=46479893;dbSNPBuildID=132;SSR=0;SAO=0;VP=050100000005000102000100;WGT=1;VC=SNV;SLO;ASP;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	46:0:0:0:0,0:0,0:0,0:46,49	130:1:0:0:0,0:0,0:10,12:119,129
16	46489831	rs72485986	T	G	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=46489831;dbSNPBuildID=130;SSR=0;SAO=0;VP=050100000005000102000100;WGT=1;VC=SNV;SLO;ASP;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:4:0:0:0,0:0,0:0,0:34,46	102:3:0:0:0,0:0,0:7,9:92,106
16	46495204	rs77970056	G	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->GT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=46495204;dbSNPBuildID=131;SSR=0;SAO=0;VP=050100000005000102000100;WGT=1;VC=SNV;SLO;ASP;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:2:0:0:0,0:0,0:38,44:0,1	92:1:0:0:0,0:0,0:83,98:8,12
16	46820740	.	C	T	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||MYLK3|processed_transcript|CODING|ENST00000569810|1|1),UPSTREAM(MODIFIER|||||RP11-480G7.2|unprocessed_pseudogene|NON_CODING|ENST00000566331||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:0:0:0:0,0:38,38:0,0:0,0	81:2:0:0:0,0:73,75:0,0:6,6
16	47888317	.	T	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||AC140542.2|lincRNA|NON_CODING|ENST00000570024|1|1),INTRON(MODIFIER|||||RP11-523L20.2|lincRNA|NON_CODING|ENST00000565451|2|1),UPSTREAM(MODIFIER|||||RP11-523L20.2|lincRNA|NON_CODING|ENST00000569726||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	25:3:0:0:1,3:0,0:0,0:21,23	45:4:1:0:1,2:7,10:1,1:32,33
16	48215039	.	A	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1344|ABCC11|protein_coding|CODING|ENST00000353782|23|1),INTRON(MODIFIER||||1382|ABCC11|protein_coding|CODING|ENST00000356608|23|1),INTRON(MODIFIER||||1382|ABCC11|protein_coding|CODING|ENST00000394747|22|1),INTRON(MODIFIER||||1382|ABCC11|protein_coding|CODING|ENST00000394748|23|1),INTRON(MODIFIER|||||ABCC11|processed_transcript|CODING|ENST00000565329|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	27:0:0:0:27,27:0,0:0,0:0,0	84:0:0:0:77,77:0,0:7,7:0,0
16	49149956	.	A	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:1:0:0:29,30:0,0:0,0:0,0	65:0:0:0:61,61:0,0:4,4:0,0
16	49342766	.	G	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:1:0:0:0,0:0,0:28,29:0,0	75:0:0:0:0,0:0,0:68,68:7,7
16	49565064	.	G	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1167|ZNF423|protein_coding|CODING|ENST00000535559|3|1),INTRON(MODIFIER||||1167|ZNF423|protein_coding|CODING|ENST00000567169|3|1),INTRON(MODIFIER||||1224|ZNF423|protein_coding|CODING|ENST00000562520|5|1),INTRON(MODIFIER||||1224|ZNF423|protein_coding|CODING|ENST00000562871|4|1),INTRON(MODIFIER||||1224|ZNF423|protein_coding|CODING|ENST00000563137|5|1),INTRON(MODIFIER||||1284|ZNF423|protein_coding|CODING|ENST00000262383|6|1),INTRON(MODIFIER||||1284|ZNF423|protein_coding|CODING|ENST00000561648|5|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	28:0:0:0:0,0:0,0:28,29:0,0	70:1:0:0:5,6:0,0:64,66:0,0
16	49748319	.	G	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1224|ZNF423|protein_coding|CODING|ENST00000562520|3|1),INTRON(MODIFIER||||1224|ZNF423|protein_coding|CODING|ENST00000562871|2|1),INTRON(MODIFIER||||1224|ZNF423|protein_coding|CODING|ENST00000563137|3|1),INTRON(MODIFIER||||1284|ZNF423|protein_coding|CODING|ENST00000262383|4|1),INTRON(MODIFIER||||1284|ZNF423|protein_coding|CODING|ENST00000561648|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:0:0:0:0,0:0,0:30,31:0,0	53:0:0:0:4,4:0,0:49,50:0,0
16	50028127	.	G	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:0:0:0:0,0:0,0:31,31:0,0	69:1:0:0:5,5:0,0:63,64:0,0
16	50595399	.	G	T	.	PASS	NT=ref;QSS=23;QSS_NT=23;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||470|NKD1|protein_coding|CODING|ENST00000268459|3|1),INTRON(MODIFIER|||||NKD1|processed_transcript|CODING|ENST00000564336|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	44:0:0:0:0,0:0,0:44,44:0,0	64:3:0:0:0,0:0,0:55,59:6,6
16	52145739	rs79593380	A	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=52145739;GMAF=0.0234;dbSNPBuildID=132;SSR=0;SAO=0;VP=050100000001040116000100;WGT=1;VC=SNV;SLO;VLD;GNO;KGPhase1;KGPROD;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:1:0:0:33,34:0,0:0,0:0,0	87:2:0:0:80,82:0,0:0,0:5,5
16	52849172	.	C	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:4:0:0:1,2:27,30:0,0:0,0	60:7:0:0:0,0:47,57:6,6:0,0
16	53701404	rs147571420	C	T	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||353|RPGRIP1L|protein_coding|CODING|ENST00000562230||1),INTRON(MODIFIER||||1235|RPGRIP1L|protein_coding|CODING|ENST00000262135|9|1),INTRON(MODIFIER||||1253|RPGRIP1L|protein_coding|CODING|ENST00000564374|9|1),INTRON(MODIFIER||||1281|RPGRIP1L|protein_coding|CODING|ENST00000563746|9|1),INTRON(MODIFIER||||1315|RPGRIP1L|protein_coding|CODING|ENST00000379925|9|1);RSPOS=53701404;GMAF=0.0041;dbSNPBuildID=134;SSR=0;SAO=0;VP=050000080005000014000100;GENEINFO=RPGRIP1L:23322;WGT=1;VC=SNV;INT;ASP;KGPhase1;KGPROD	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	41:0:0:0:0,0:41,41:0,0:0,0	75:1:0:0:1,1:66,67:0,1:7,7
16	55005807	.	C	T	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	44:1:0:0:0,0:43,45:0,0:0,0	63:0:0:0:0,0:59,60:0,0:4,4
16	58926333	.	T	C	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-410D17.2|lincRNA|NON_CODING|ENST00000500117|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:3:1:0:0,0:1,2:0,0:35,38	78:6:0:0:0,0:14,16:0,0:58,62
16	59714815	rs201294279	T	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=59714815;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	14:0:0:0:0,0:0,0:0,0:14,18	30:0:0:0:0,0:8,8:0,0:22,34
16	60378551	.	C	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:0:0:0:0,0:34,34:0,0:0,0	82:1:0:0:1,1:71,72:0,0:9,9
16	61174408	.	A	G	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:0:0:0:33,33:0,0:0,0:0,0	80:0:0:0:72,72:0,0:7,7:1,1
16	62088965	.	C	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:0:0:0:0,0:33,33:0,0:0,0	89:1:0:0:7,8:81,82:0,0:0,0
16	63288421	.	C	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:0:0:0:0,0:30,30:0,0:0,0	62:1:0:0:0,0:57,58:4,4:0,0
16	63996069	.	G	A	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:0:0:0:0,0:0,0:35,35:0,0	70:0:0:0:8,8:0,0:62,62:0,0
16	64929565	.	G	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:0:0:0:0,0:0,0:32,33:0,0	87:0:0:0:2,2:7,7:77,77:1,1
16	67067384	.	T	C	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||182|CBFB|protein_coding|CODING|ENST00000290858|2|1),INTRON(MODIFIER||||187|CBFB|protein_coding|CODING|ENST00000412916|2|1),INTRON(MODIFIER||||60|CBFB|protein_coding|CODING|ENST00000563939|1|1),INTRON(MODIFIER||||82|CBFB|protein_coding|CODING|ENST00000561924|2|1),INTRON(MODIFIER||||92|CBFB|protein_coding|CODING|ENST00000564034|2|1),UPSTREAM(MODIFIER|||||CBFB|retained_intron|CODING|ENST00000567947||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	45:2:0:0:0,0:0,0:0,0:43,46	70:2:0:0:0,0:5,5:0,0:63,65
16	68585580	.	G	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||102|ZFP90|protein_coding|CODING|ENST00000562156|2|1),INTRON(MODIFIER||||102|ZFP90|protein_coding|CODING|ENST00000573685|2|1),INTRON(MODIFIER||||32|ZFP90|protein_coding|CODING|ENST00000569109|3|1),INTRON(MODIFIER||||44|ZFP90|protein_coding|CODING|ENST00000571382|3|1),INTRON(MODIFIER||||46|ZFP90|protein_coding|CODING|ENST00000576305|3|1),INTRON(MODIFIER||||52|ZFP90|protein_coding|CODING|ENST00000573161|1|1),INTRON(MODIFIER||||636|ZFP90|protein_coding|CODING|ENST00000398253|1|1),INTRON(MODIFIER||||636|ZFP90|protein_coding|CODING|ENST00000563169|2|1),INTRON(MODIFIER||||636|ZFP90|protein_coding|CODING|ENST00000570495|2|1),INTRON(MODIFIER||||93|ZFP90|protein_coding|CODING|ENST00000564323|2|1),INTRON(MODIFIER|||||ZFP90|nonsense_mediated_decay|CODING|ENST00000564558|2|1),INTRON(MODIFIER|||||ZFP90|nonsense_mediated_decay|CODING|ENST00000569323|1|1),INTRON(MODIFIER|||||ZFP90|nonsense_mediated_decay|CODING|ENST00000571809|2|1),INTRON(MODIFIER|||||ZFP90|nonsense_mediated_decay|CODING|ENST00000576805|2|1),INTRON(MODIFIER|||||ZFP90|processed_transcript|CODING|ENST00000570884|2|1),INTRON(MODIFIER|||||ZFP90|retained_intron|CODING|ENST00000566573|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:0:0:0:0,0:0,0:33,33:0,0	86:2:0:0:0,0:6,6:78,81:0,0
16	68585582	.	A	G	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||102|ZFP90|protein_coding|CODING|ENST00000562156|2|1),INTRON(MODIFIER||||102|ZFP90|protein_coding|CODING|ENST00000573685|2|1),INTRON(MODIFIER||||32|ZFP90|protein_coding|CODING|ENST00000569109|3|1),INTRON(MODIFIER||||44|ZFP90|protein_coding|CODING|ENST00000571382|3|1),INTRON(MODIFIER||||46|ZFP90|protein_coding|CODING|ENST00000576305|3|1),INTRON(MODIFIER||||52|ZFP90|protein_coding|CODING|ENST00000573161|1|1),INTRON(MODIFIER||||636|ZFP90|protein_coding|CODING|ENST00000398253|1|1),INTRON(MODIFIER||||636|ZFP90|protein_coding|CODING|ENST00000563169|2|1),INTRON(MODIFIER||||636|ZFP90|protein_coding|CODING|ENST00000570495|2|1),INTRON(MODIFIER||||93|ZFP90|protein_coding|CODING|ENST00000564323|2|1),INTRON(MODIFIER|||||ZFP90|nonsense_mediated_decay|CODING|ENST00000564558|2|1),INTRON(MODIFIER|||||ZFP90|nonsense_mediated_decay|CODING|ENST00000569323|1|1),INTRON(MODIFIER|||||ZFP90|nonsense_mediated_decay|CODING|ENST00000571809|2|1),INTRON(MODIFIER|||||ZFP90|nonsense_mediated_decay|CODING|ENST00000576805|2|1),INTRON(MODIFIER|||||ZFP90|processed_transcript|CODING|ENST00000570884|2|1),INTRON(MODIFIER|||||ZFP90|retained_intron|CODING|ENST00000566573|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:0:0:0:35,35:0,0:0,0:0,0	89:2:0:0:79,82:0,0:8,8:0,0
16	68632538	.	C	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:1:0:0:0,0:29,30:0,0:0,0	83:1:0:0:0,0:78,81:4,4:0,0
16	68920689	.	T	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1094|TMCO7|protein_coding|CODING|ENST00000261778|7|1),UPSTREAM(MODIFIER|||||Y_RNA|misc_RNA|NON_CODING|ENST00000363109||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:2:0:0:0,0:0,0:0,0:32,34	80:1:0:0:0,0:9,9:0,0:70,71
16	70167366	.	A	G	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||779|PDPR|protein_coding|CODING|ENST00000398122|7|1),INTRON(MODIFIER||||879|PDPR|protein_coding|CODING|ENST00000288050|9|1),INTRON(MODIFIER||||879|PDPR|protein_coding|CODING|ENST00000568530|9|1),INTRON(MODIFIER|||||PDPR|nonsense_mediated_decay|CODING|ENST00000565186|7|1),INTRON(MODIFIER|||||PDPR|processed_transcript|CODING|ENST00000562100|2|1),INTRON(MODIFIER|||||PDPR|retained_intron|CODING|ENST00000561920|6|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	46:5:0:0:40,44:1,2:0,0:0,0	109:8:0:0:93,100:0,0:8,11:0,1
16	70299953	.	A	G	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||968|AARS|protein_coding|CODING|ENST00000261772|9|1),INTRON(MODIFIER|||||AARS|processed_transcript|CODING|ENST00000569790|1|1),UPSTREAM(MODIFIER|||||AARS|processed_transcript|CODING|ENST00000564359||1),UPSTREAM(MODIFIER|||||AARS|retained_intron|CODING|ENST00000566969||1),UPSTREAM(MODIFIER|||||AARS|retained_intron|CODING|ENST00000567490||1),UPSTREAM(MODIFIER|||||Metazoa_SRP|misc_RNA|NON_CODING|ENST00000583724||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:0:0:0:32,32:0,0:0,0:0,0	69:4:0:0:55,56:0,1:10,12:0,0
16	71030176	rs78156091	G	C	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1214|HYDIN|protein_coding|CODING|ENST00000448089|22|1),INTRON(MODIFIER||||5120|HYDIN|protein_coding|CODING|ENST00000316490|23|1),INTRON(MODIFIER||||5121|HYDIN|protein_coding|CODING|ENST00000393567|23|1),INTRON(MODIFIER|||||HYDIN|nonsense_mediated_decay|CODING|ENST00000393552|14|1);RSPOS=71030176;dbSNPBuildID=131;SSR=0;SAO=0;VP=050000080005040102000100;GENEINFO=HYDIN:54768;WGT=1;VC=SNV;INT;ASP;VLD;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:0:0:0:0,0:0,0:35,37:1,1	88:0:0:0:0,0:8,11:80,81:0,0
16	71470300	.	G	A	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||RP11-510M2.4|processed_transcript|NON_CODING|ENST00000561754||1),UPSTREAM(MODIFIER|||||RP11-510M2.4|transcribed_processed_pseudogene|NON_CODING|ENST00000572770||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:1:0:0:0,0:0,0:33,35:0,0	75:5:0:0:7,7:0,0:63,68:0,0
16	71673585	.	A	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||401|MARVELD3|protein_coding|CODING|ENST00000268485||1),INTRON(MODIFIER||||148|MARVELD3|protein_coding|CODING|ENST00000565261|2|1),INTRON(MODIFIER||||166|PHLPP2|protein_coding|CODING|ENST00000540628|8|1),INTRON(MODIFIER||||410|MARVELD3|protein_coding|CODING|ENST00000299952|2|1),INTRON(MODIFIER|||||MARVELD3|processed_transcript|CODING|ENST00000561682|1|1),INTRON(MODIFIER|||||PHLPP2|nonsense_mediated_decay|CODING|ENST00000568004|14|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:0:0:0:30,31:0,0:0,0:0,0	70:3:0:0:62,65:0,0:5,6:0,0
16	71673602	.	A	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||401|MARVELD3|protein_coding|CODING|ENST00000268485||1),INTRON(MODIFIER||||148|MARVELD3|protein_coding|CODING|ENST00000565261|2|1),INTRON(MODIFIER||||166|PHLPP2|protein_coding|CODING|ENST00000540628|8|1),INTRON(MODIFIER||||410|MARVELD3|protein_coding|CODING|ENST00000299952|2|1),INTRON(MODIFIER|||||MARVELD3|processed_transcript|CODING|ENST00000561682|1|1),INTRON(MODIFIER|||||PHLPP2|nonsense_mediated_decay|CODING|ENST00000568004|14|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:0:0:0:30,31:0,0:0,0:0,0	75:1:0:0:69,70:0,0:5,5:0,0
16	72255413	.	G	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||RP11-328J14.1|lincRNA|NON_CODING|ENST00000563347||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:1:0:0:0,0:0,0:29,30:0,0	72:2:0:0:9,9:0,1:61,62:0,0
16	72335683	.	C	T	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:0:0:0:1,1:38,39:0,0:0,0	66:1:0:0:0,1:61,61:0,0:4,4
16	73800476	.	G	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:2:0:0:0,0:0,0:30,32:0,0	80:1:0:0:8,8:0,1:71,71:0,0
16	74036850	.	T	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:0:0:0:0,0:0,0:1,1:32,32	75:0:0:0:1,1:6,6:0,0:68,68
16	74405971	.	A	G	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=AA->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=DOWNSTREAM(MODIFIER|||||RP11-252A24.3|lincRNA|NON_CODING|ENST00000563701||1),INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||RP11-252A24.2|retained_intron|NON_CODING|ENST00000429810||1),UPSTREAM(MODIFIER|||||RP11-252A24.2|retained_intron|NON_CODING|ENST00000566802||1),UPSTREAM(MODIFIER|||||RP11-252A24.2|retained_intron|NON_CODING|ENST00000568371||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	73:1:0:0:71,73:0,0:1,1:0,0	124:2:0:0:116,120:0,0:6,6:0,0
16	74418864	rs138119951	T	C	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||304|NPIPL2|protein_coding|CODING|ENST00000504746|2|1),INTRON(MODIFIER||||443|NPIPL2|protein_coding|CODING|ENST00000429990|2|1);RSPOS=74418864;GMAF=0.1328;dbSNPBuildID=134;SSR=0;SAO=0;VP=050000080005000014000100;GENEINFO=NPIPL2:440348;WGT=1;VC=SNV;INT;ASP;KGPhase1;KGPROD	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	41:2:0:0:0,0:0,1:1,1:38,42	90:5:0:0:0,0:8,16:0,0:77,84
16	74762942	.	C	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||159|FA2H|protein_coding|CODING|ENST00000544337|2|1),INTRON(MODIFIER||||191|FA2H|protein_coding|CODING|ENST00000569949|2|1),INTRON(MODIFIER||||372|FA2H|protein_coding|CODING|ENST00000219368|2|1),INTRON(MODIFIER|||||FA2H|nonsense_mediated_decay|CODING|ENST00000567683|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	23:3:0:0:0,0:20,23:0,0:0,0	46:7:0:0:0,0:31,38:0,0:8,9
16	78506978	.	G	T	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||213|WWOX|protein_coding|CODING|ENST00000539474|4|1),INTRON(MODIFIER||||234|WWOX|protein_coding|CODING|ENST00000406884|5|1),INTRON(MODIFIER||||311|WWOX|protein_coding|CODING|ENST00000402655|4|1),INTRON(MODIFIER||||363|WWOX|protein_coding|CODING|ENST00000408984|8|1),INTRON(MODIFIER||||414|WWOX|protein_coding|CODING|ENST00000566780|8|1),INTRON(MODIFIER|||||WWOX|nonsense_mediated_decay|CODING|ENST00000569332|7|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:0:0:0:0,0:0,0:36,36:0,0	63:1:0:0:0,0:0,0:56,58:6,6
16	78578981	.	T	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||213|WWOX|protein_coding|CODING|ENST00000539474|4|1),INTRON(MODIFIER||||234|WWOX|protein_coding|CODING|ENST00000406884|5|1),INTRON(MODIFIER||||311|WWOX|protein_coding|CODING|ENST00000402655|4|1),INTRON(MODIFIER||||363|WWOX|protein_coding|CODING|ENST00000408984|8|1),INTRON(MODIFIER||||414|WWOX|protein_coding|CODING|ENST00000566780|8|1),INTRON(MODIFIER|||||WWOX|nonsense_mediated_decay|CODING|ENST00000569332|7|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	26:0:0:0:0,0:0,0:0,0:26,26	75:0:0:0:0,0:0,0:9,9:66,66
16	78612688	.	T	G	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||213|WWOX|protein_coding|CODING|ENST00000539474|4|1),INTRON(MODIFIER||||234|WWOX|protein_coding|CODING|ENST00000406884|5|1),INTRON(MODIFIER||||311|WWOX|protein_coding|CODING|ENST00000402655|4|1),INTRON(MODIFIER||||363|WWOX|protein_coding|CODING|ENST00000408984|8|1),INTRON(MODIFIER||||414|WWOX|protein_coding|CODING|ENST00000566780|8|1),INTRON(MODIFIER|||||WWOX|nonsense_mediated_decay|CODING|ENST00000569332|7|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:0:0:0:0,0:0,0:0,0:32,32	70:0:0:0:0,0:0,0:6,6:64,65
16	78626258	.	G	T	.	PASS	NT=ref;QSS=23;QSS_NT=23;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||213|WWOX|protein_coding|CODING|ENST00000539474|4|1),INTRON(MODIFIER||||234|WWOX|protein_coding|CODING|ENST00000406884|5|1),INTRON(MODIFIER||||311|WWOX|protein_coding|CODING|ENST00000402655|4|1),INTRON(MODIFIER||||363|WWOX|protein_coding|CODING|ENST00000408984|8|1),INTRON(MODIFIER||||414|WWOX|protein_coding|CODING|ENST00000566780|8|1),INTRON(MODIFIER|||||WWOX|nonsense_mediated_decay|CODING|ENST00000569332|7|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	47:1:0:0:0,0:0,0:46,47:0,0	69:1:0:0:0,0:0,0:64,64:4,5
16	78670402	.	C	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||213|WWOX|protein_coding|CODING|ENST00000539474|4|1),INTRON(MODIFIER||||234|WWOX|protein_coding|CODING|ENST00000406884|5|1),INTRON(MODIFIER||||311|WWOX|protein_coding|CODING|ENST00000402655|4|1),INTRON(MODIFIER||||363|WWOX|protein_coding|CODING|ENST00000408984|8|1),INTRON(MODIFIER||||414|WWOX|protein_coding|CODING|ENST00000566780|8|1),INTRON(MODIFIER|||||WWOX|nonsense_mediated_decay|CODING|ENST00000569332|7|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:0:0:0:0,0:34,34:0,0:0,0	59:0:0:0:0,0:53,53:0,0:6,6
16	78725785	.	G	T	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||213|WWOX|protein_coding|CODING|ENST00000539474|4|1),INTRON(MODIFIER||||234|WWOX|protein_coding|CODING|ENST00000406884|5|1),INTRON(MODIFIER||||311|WWOX|protein_coding|CODING|ENST00000402655|4|1),INTRON(MODIFIER||||363|WWOX|protein_coding|CODING|ENST00000408984|9|1),INTRON(MODIFIER||||414|WWOX|protein_coding|CODING|ENST00000566780|8|1),INTRON(MODIFIER|||||WWOX|nonsense_mediated_decay|CODING|ENST00000569332|7|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:1:0:0:0,0:0,0:35,36:0,0	87:0:0:0:0,0:0,0:75,75:12,12
16	78730352	.	T	C	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||213|WWOX|protein_coding|CODING|ENST00000539474|4|1),INTRON(MODIFIER||||234|WWOX|protein_coding|CODING|ENST00000406884|5|1),INTRON(MODIFIER||||311|WWOX|protein_coding|CODING|ENST00000402655|4|1),INTRON(MODIFIER||||363|WWOX|protein_coding|CODING|ENST00000408984|9|1),INTRON(MODIFIER||||414|WWOX|protein_coding|CODING|ENST00000566780|8|1),INTRON(MODIFIER|||||WWOX|nonsense_mediated_decay|CODING|ENST00000569332|7|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:1:0:0:0,0:0,0:0,0:35,36	70:1:0:0:0,0:9,9:0,0:60,61
16	78732978	.	C	G	.	PASS	NT=ref;QSS=23;QSS_NT=23;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||213|WWOX|protein_coding|CODING|ENST00000539474|4|1),INTRON(MODIFIER||||234|WWOX|protein_coding|CODING|ENST00000406884|5|1),INTRON(MODIFIER||||311|WWOX|protein_coding|CODING|ENST00000402655|4|1),INTRON(MODIFIER||||363|WWOX|protein_coding|CODING|ENST00000408984|9|1),INTRON(MODIFIER||||414|WWOX|protein_coding|CODING|ENST00000566780|8|1),INTRON(MODIFIER|||||WWOX|nonsense_mediated_decay|CODING|ENST00000569332|7|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	46:1:0:0:1,1:44,45:0,0:0,0	75:1:0:0:0,0:67,68:7,7:0,0
16	78767508	.	C	A	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||213|WWOX|protein_coding|CODING|ENST00000539474|4|1),INTRON(MODIFIER||||234|WWOX|protein_coding|CODING|ENST00000406884|5|1),INTRON(MODIFIER||||311|WWOX|protein_coding|CODING|ENST00000402655|4|1),INTRON(MODIFIER||||363|WWOX|protein_coding|CODING|ENST00000408984|9|1),INTRON(MODIFIER||||414|WWOX|protein_coding|CODING|ENST00000566780|8|1),INTRON(MODIFIER|||||WWOX|nonsense_mediated_decay|CODING|ENST00000569332|7|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:1:0:0:0,0:35,36:0,0:0,0	75:3:0:0:4,4:67,70:1,1:0,0
16	78805728	.	A	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||213|WWOX|protein_coding|CODING|ENST00000539474|5|1),INTRON(MODIFIER||||234|WWOX|protein_coding|CODING|ENST00000406884|5|1),INTRON(MODIFIER||||311|WWOX|protein_coding|CODING|ENST00000402655|4|1),INTRON(MODIFIER||||363|WWOX|protein_coding|CODING|ENST00000408984|9|1),INTRON(MODIFIER||||414|WWOX|protein_coding|CODING|ENST00000566780|8|1),INTRON(MODIFIER|||||WWOX|nonsense_mediated_decay|CODING|ENST00000569332|7|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:1:0:0:31,32:0,0:0,0:0,0	64:2:0:0:56,58:0,0:0,0:6,6
16	78878037	.	A	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||213|WWOX|protein_coding|CODING|ENST00000539474|5|1),INTRON(MODIFIER||||234|WWOX|protein_coding|CODING|ENST00000406884|5|1),INTRON(MODIFIER||||311|WWOX|protein_coding|CODING|ENST00000402655|4|1),INTRON(MODIFIER||||414|WWOX|protein_coding|CODING|ENST00000566780|8|1),INTRON(MODIFIER|||||WWOX|nonsense_mediated_decay|CODING|ENST00000569332|7|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:0:0:0:29,29:0,0:0,0:0,0	80:0:0:0:75,75:0,0:1,1:4,4
16	78918191	rs66819314	C	A	.	PASS	NT=ref;QSS=25;QSS_NT=25;SGT=CC->AC;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER||||213|WWOX|protein_coding|CODING|ENST00000539474|5|1),INTRON(MODIFIER||||234|WWOX|protein_coding|CODING|ENST00000406884|5|1),INTRON(MODIFIER||||311|WWOX|protein_coding|CODING|ENST00000402655|4|1),INTRON(MODIFIER||||414|WWOX|protein_coding|CODING|ENST00000566780|8|1),INTRON(MODIFIER|||||WWOX|nonsense_mediated_decay|CODING|ENST00000569332|7|1);RSPOS=78918191;dbSNPBuildID=131;SSR=16;SAO=0;VP=050100080015000102000100;GENEINFO=WWOX:51741;WGT=1;VC=SNV;SLO;INT;OTH;ASP;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	28:1:3:0:0,0:27,28:0,0:0,0	34:0:20:0:8,8:26,28:0,0:0,0
16	78930836	.	A	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||213|WWOX|protein_coding|CODING|ENST00000539474|5|1),INTRON(MODIFIER||||234|WWOX|protein_coding|CODING|ENST00000406884|5|1),INTRON(MODIFIER||||311|WWOX|protein_coding|CODING|ENST00000402655|4|1),INTRON(MODIFIER||||414|WWOX|protein_coding|CODING|ENST00000566780|8|1),INTRON(MODIFIER|||||WWOX|nonsense_mediated_decay|CODING|ENST00000569332|7|1),UPSTREAM(MODIFIER|||||RP11-319G9.3|sense_intronic|NON_CODING|ENST00000568885||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:2:0:0:32,35:0,0:0,0:0,0	78:0:0:0:71,71:0,0:0,0:7,7
16	78987995	.	C	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||213|WWOX|protein_coding|CODING|ENST00000539474|5|1),INTRON(MODIFIER||||234|WWOX|protein_coding|CODING|ENST00000406884|5|1),INTRON(MODIFIER||||311|WWOX|protein_coding|CODING|ENST00000402655|4|1),INTRON(MODIFIER||||414|WWOX|protein_coding|CODING|ENST00000566780|8|1),INTRON(MODIFIER|||||WWOX|nonsense_mediated_decay|CODING|ENST00000569332|7|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:0:0:0:0,0:30,30:0,0:0,0	58:1:0:0:6,6:51,51:0,1:0,0
16	80277489	.	A	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER|||||RP11-525K10.3|antisense|NON_CODING|ENST00000565050|3|1),INTRON(MODIFIER|||||RP11-525K10.3|antisense|NON_CODING|ENST00000568776|2|1),INTRON(MODIFIER|||||RP11-525K10.3|antisense|NON_CODING|ENST00000568819|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:4:0:0:27,33:0,0:0,2:0,1	47:6:0:0:34,41:0,0:7,13:0,0
16	80662668	.	A	G	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||CDYL2|processed_transcript|CODING|ENST00000567924||1),INTRON(MODIFIER||||217|CDYL2|protein_coding|CODING|ENST00000561616|2|1),INTRON(MODIFIER||||506|CDYL2|protein_coding|CODING|ENST00000299564|3|1),INTRON(MODIFIER||||507|CDYL2|protein_coding|CODING|ENST00000562812|4|1),INTRON(MODIFIER||||507|CDYL2|protein_coding|CODING|ENST00000563890|4|1),INTRON(MODIFIER||||507|CDYL2|protein_coding|CODING|ENST00000566173|4|1),UPSTREAM(MODIFIER|||||RP11-18F14.4|sense_intronic|NON_CODING|ENST00000563684||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:1:0:0:32,32:0,1:0,0:0,0	67:0:0:0:61,61:0,0:6,6:0,0
16	81043118	.	A	G	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||176|CENPN|protein_coding|CODING|ENST00000564669|1|1),INTRON(MODIFIER||||204|CENPN|protein_coding|CODING|ENST00000299572|1|1),INTRON(MODIFIER||||305|CENPN|protein_coding|CODING|ENST00000428963|1|1),INTRON(MODIFIER||||319|CENPN|protein_coding|CODING|ENST00000439957|1|1),INTRON(MODIFIER||||339|CENPN|protein_coding|CODING|ENST00000305850|1|1),INTRON(MODIFIER||||353|CENPN|protein_coding|CODING|ENST00000393335|1|1),INTRON(MODIFIER||||79|CMC2|protein_coding|CODING|ENST00000565914|1|1),INTRON(MODIFIER|||||CENPN|nonsense_mediated_decay|CODING|ENST00000568445|1|1),INTRON(MODIFIER|||||CENPN|processed_transcript|CODING|ENST00000569461|1|1),UPSTREAM(MODIFIER||||50|CMC2|protein_coding|CODING|ENST00000486645||1),UPSTREAM(MODIFIER||||55|CMC2|protein_coding|CODING|ENST00000564174||1),UPSTREAM(MODIFIER||||55|CMC2|protein_coding|CODING|ENST00000565108||1),UPSTREAM(MODIFIER||||70|CMC2|protein_coding|CODING|ENST00000565650||1),UPSTREAM(MODIFIER||||74|CMC2|protein_coding|CODING|ENST00000562713||1),UPSTREAM(MODIFIER||||74|CMC2|protein_coding|CODING|ENST00000565925||1),UPSTREAM(MODIFIER||||79|CMC2|protein_coding|CODING|ENST00000219400||1),UPSTREAM(MODIFIER||||93|CMC2|protein_coding|CODING|ENST00000570195||1),UPSTREAM(MODIFIER|||||CMC2|nonsense_mediated_decay|CODING|ENST00000565613||1),UPSTREAM(MODIFIER|||||CMC2|nonsense_mediated_decay|CODING|ENST00000567593||1),UPSTREAM(MODIFIER|||||CMC2|nonsense_mediated_decay|CODING|ENST00000568228||1),UPSTREAM(MODIFIER|||||CMC2|nonsense_mediated_decay|CODING|ENST00000570086||1),UPSTREAM(MODIFIER|||||CMC2|processed_transcript|CODING|ENST00000562828||1),UPSTREAM(MODIFIER|||||CMC2|processed_transcript|CODING|ENST00000565514||1),UPSTREAM(MODIFIER|||||CMC2|processed_transcript|CODING|ENST00000569187||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	42:0:0:0:42,43:0,0:0,0:0,0	69:0:0:0:65,65:0,0:4,4:0,0
16	81670866	.	C	T	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||679|CMIP|protein_coding|CODING|ENST00000539778|3|1),INTRON(MODIFIER||||773|CMIP|protein_coding|CODING|ENST00000537098|3|1),INTRON(MODIFIER|||||CMIP|processed_transcript|CODING|ENST00000566513|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:0:0:0:0,0:38,38:0,0:0,0	69:0:0:0:0,0:64,65:0,0:5,5
16	81850784	.	G	A	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1265|PLCG2|protein_coding|CODING|ENST00000359376|2|1),INTRON(MODIFIER||||158|PLCG2|protein_coding|CODING|ENST00000565054|3|1),INTRON(MODIFIER|||||PLCG2|processed_transcript|CODING|ENST00000565400|1|1),INTRON(MODIFIER|||||PLCG2|retained_intron|CODING|ENST00000567980|1|1),INTRON(MODIFIER|||||PLCG2|retained_intron|CODING|ENST00000569929|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	44:2:0:0:0,0:0,0:42,44:0,0	61:1:0:0:4,4:0,0:56,57:0,0
16	82091716	.	G	A	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||132|HSD17B2|protein_coding|CODING|ENST00000566213|1|1),INTRON(MODIFIER||||200|HSD17B2|protein_coding|CODING|ENST00000569351|1|1),INTRON(MODIFIER||||219|HSD17B2|protein_coding|CODING|ENST00000568090|1|1),INTRON(MODIFIER||||387|HSD17B2|protein_coding|CODING|ENST00000199936|1|1),INTRON(MODIFIER||||65|HSD17B2|protein_coding|CODING|ENST00000563491|1|1),INTRON(MODIFIER|||||RP11-510J16.5|antisense|NON_CODING|ENST00000561826|1|1),INTRON(MODIFIER|||||RP11-510J16.5|antisense|NON_CODING|ENST00000567021|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	41:5:0:0:0,0:0,0:36,40:0,1	71:8:0:0:6,8:0,0:56,61:1,2
16	82469586	.	T	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||RP11-481E4.1|processed_pseudogene|NON_CODING|ENST00000563948||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:0:0:0:0,0:0,0:1,1:28,29	52:0:0:0:5,5:0,0:0,0:47,47
16	82730242	.	A	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||175|CDH13|protein_coding|CODING|ENST00000446376|1|1),INTRON(MODIFIER||||175|CDH13|protein_coding|CODING|ENST00000565636|1|1),INTRON(MODIFIER||||190|CDH13|protein_coding|CODING|ENST00000431540|1|1),INTRON(MODIFIER||||674|CDH13|protein_coding|CODING|ENST00000428848|1|1),INTRON(MODIFIER||||67|CDH13|protein_coding|CODING|ENST00000567445|1|1),INTRON(MODIFIER||||713|CDH13|protein_coding|CODING|ENST00000566620|1|1),INTRON(MODIFIER||||760|CDH13|protein_coding|CODING|ENST00000268613|2|1),INTRON(MODIFIER|||||CDH13|nonsense_mediated_decay|CODING|ENST00000539548|1|1),INTRON(MODIFIER|||||CDH13|nonsense_mediated_decay|CODING|ENST00000562601|1|1),INTRON(MODIFIER|||||CDH13|nonsense_mediated_decay|CODING|ENST00000568770|1|1),INTRON(MODIFIER|||||CDH13|nonsense_mediated_decay|CODING|ENST00000569144|1|1),INTRON(MODIFIER|||||CDH13|processed_transcript|CODING|ENST00000569455|4|1),INTRON(MODIFIER|||||CDH13|retained_intron|CODING|ENST00000566333|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:0:0:0:30,30:0,0:0,0:0,0	76:1:0:0:70,71:0,0:5,5:0,0
16	83950415	rs28450784	C	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||493|MLYCD|protein_coding|CODING|ENST00000262430||1),DOWNSTREAM(MODIFIER|||||MLYCD|retained_intron|CODING|ENST00000569024||1),INTRON(MODIFIER|||||RP11-505K9.4|processed_transcript|NON_CODING|ENST00000561562|2|1),INTRON(MODIFIER|||||RP11-505K9.4|processed_transcript|NON_CODING|ENST00000563312|2|1),INTRON(MODIFIER|||||RP11-505K9.4|processed_transcript|NON_CODING|ENST00000566309|2|1);RSPOS=83950415;dbSNPBuildID=125;SSR=0;SAO=0;VP=050000000001000002000100;WGT=1;VC=SNV;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	24:0:0:0:0,0:24,31:0,0:0,0	44:8:0:0:0,0:31,55:0,0:5,8
16	84084392	rs75861838	G	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->GT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=DOWNSTREAM(MODIFIER||||1052|MBTPS1|protein_coding|CODING|ENST00000343411||1),DOWNSTREAM(MODIFIER|||||MBTPS1|retained_intron|CODING|ENST00000562886||1),DOWNSTREAM(MODIFIER|||||MBTPS1|retained_intron|CODING|ENST00000562906||1),DOWNSTREAM(MODIFIER|||||MBTPS1|retained_intron|CODING|ENST00000570064||1),INTERGENIC(MODIFIER||||||||||1);RSPOS=84084392;dbSNPBuildID=131;SSR=0;SAO=0;VP=050000000001040102000100;WGT=1;VC=SNV;VLD;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	61:8:0:0:0,0:0,1:53,80:0,1	114:6:0:0:0,0:0,1:103,142:5,6
16	85196755	.	T	C	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:1:0:0:0,0:0,0:1,1:34,35	75:2:0:0:0,0:10,11:2,3:61,63
16	85196758	.	G	A	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:1:0:0:0,0:0,0:36,37:0,0	74:2:0:0:8,8:0,0:64,68:0,0
16	85359414	.	A	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	26:1:0:0:25,26:0,0:0,0:0,0	67:1:0:0:56,60:0,0:9,9:1,1
16	85359422	.	G	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	28:0:0:0:0,0:0,0:27,27:1,1	65:1:0:0:6,6:0,0:58,62:0,0
16	85459570	.	C	T	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:0:0:0:0,0:36,37:0,0:0,0	67:0:0:0:0,0:61,64:0,0:6,6
16	85722045	.	A	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=AA->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER||||185|GINS2|protein_coding|CODING|ENST00000253462|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:2:0:0:35,36:0,1:0,1:0,0	77:1:0:0:70,70:0,0:6,7:0,0
16	86370185	.	T	C	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||119|AC092327.1|protein_coding|CODING|ENST00000304488|4|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	28:1:0:0:0,0:0,0:1,1:26,27	68:3:0:0:0,0:11,12:0,2:54,55
16	86830379	.	A	G	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:0:0:0:36,36:0,0:0,0:0,0	64:1:0:0:59,60:0,0:4,4:0,0
16	87648649	.	G	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||748|JPH3|protein_coding|CODING|ENST00000284262|1|1),INTRON(MODIFIER|||||JPH3|processed_transcript|CODING|ENST00000537256|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:0:0:0:0,0:0,0:30,33:1,1	48:1:0:0:5,6:0,0:42,44:0,0
16	87720243	.	C	T	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||748|JPH3|protein_coding|CODING|ENST00000284262|3|1),INTRON(MODIFIER|||||JPH3|processed_transcript|CODING|ENST00000537256|3|1),INTRON(MODIFIER|||||JPH3|processed_transcript|CODING|ENST00000563609|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	46:2:0:0:0,0:43,45:1,1:0,0	63:6:0:0:0,0:52,58:0,2:5,5
16	88196558	.	C	T	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	43:2:0:0:0,0:41,43:0,0:0,0	76:0:0:0:0,0:72,72:0,0:4,4
16	88317745	.	C	G	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||LA16c-444G7.1|processed_transcript|NON_CODING|ENST00000563190|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:2:0:0:0,0:33,37:0,0:0,0	91:6:0:0:0,0:78,84:7,10:0,0
16	88343207	.	T	G	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:3:0:0:1,1:0,0:2,2:32,35	64:4:0:0:0,0:0,1:14,16:46,47
16	88377909	.	C	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	27:1:0:0:0,0:26,27:0,0:0,0	78:0:0:0:0,0:69,71:0,0:9,9
16	88455351	.	G	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:0:0:0:1,1:0,0:37,37:0,0	72:1:0:0:4,4:0,0:67,68:0,0
16	88466684	.	A	G	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:0:0:0:38,38:0,0:0,0:0,0	76:0:0:0:64,64:2,2:10,10:0,0
16	88777054	.	C	A	.	PASS	NT=ref;QSS=24;QSS_NT=24;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||2521|PIEZO1|protein_coding|CODING|ENST00000301015||1),DOWNSTREAM(MODIFIER||||373|PIEZO1|protein_coding|CODING|ENST00000327397||1),DOWNSTREAM(MODIFIER|||||PIEZO1|nonsense_mediated_decay|CODING|ENST00000419505||1),DOWNSTREAM(MODIFIER|||||PIEZO1|retained_intron|CODING|ENST00000484567||1),DOWNSTREAM(MODIFIER|||||PIEZO1|retained_intron|CODING|ENST00000521877||1),EXON(MODIFIER|||||CTU2|retained_intron|CODING|ENST00000565071|4|1),INTRON(MODIFIER||||428|CTU2|protein_coding|CODING|ENST00000378384|3|1),INTRON(MODIFIER||||485|CTU2|protein_coding|CODING|ENST00000312060|4|1),INTRON(MODIFIER||||515|CTU2|protein_coding|CODING|ENST00000453996|4|1),INTRON(MODIFIER||||586|CTU2|protein_coding|CODING|ENST00000567949|4|1),INTRON(MODIFIER||||88|CTU2|protein_coding|CODING|ENST00000564921|3|1),INTRON(MODIFIER|||||CTU2|nonsense_mediated_decay|CODING|ENST00000564105|3|1),INTRON(MODIFIER|||||CTU2|retained_intron|CODING|ENST00000566637|2|1),UPSTREAM(MODIFIER||||108|CTU2|protein_coding|CODING|ENST00000567316||1),UPSTREAM(MODIFIER||||148|RNF166|protein_coding|CODING|ENST00000562544||1),UPSTREAM(MODIFIER||||156|RNF166|protein_coding|CODING|ENST00000567844||1),UPSTREAM(MODIFIER||||237|RNF166|protein_coding|CODING|ENST00000312838||1),UPSTREAM(MODIFIER|||||CTU2|retained_intron|CODING|ENST00000562011||1),UPSTREAM(MODIFIER|||||CTU2|retained_intron|CODING|ENST00000564584||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	51:4:0:0:0,0:47,53:0,0:0,0	70:1:0:0:7,8:62,62:0,0:0,0
16	88905615	.	A	G	.	PASS	NT=ref;QSS=27;QSS_NT=27;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||GALNS|processed_transcript|CODING|ENST00000565364||1),DOWNSTREAM(MODIFIER|||||GALNS|retained_intron|CODING|ENST00000567779||1),INTRON(MODIFIER||||169|GALNS|protein_coding|CODING|ENST00000562831|3|1),INTRON(MODIFIER||||447|GALNS|protein_coding|CODING|ENST00000542788|3|1),INTRON(MODIFIER||||522|GALNS|protein_coding|CODING|ENST00000268695|4|1),INTRON(MODIFIER|||||GALNS|nonsense_mediated_decay|CODING|ENST00000567525|3|1),INTRON(MODIFIER|||||GALNS|nonsense_mediated_decay|CODING|ENST00000568613|5|1),INTRON(MODIFIER|||||GALNS|retained_intron|CODING|ENST00000562593|2|1),UPSTREAM(MODIFIER|||||GALNS|processed_transcript|CODING|ENST00000561812||1),UPSTREAM(MODIFIER|||||GALNS|processed_transcript|CODING|ENST00000562931||1),UPSTREAM(MODIFIER|||||GALNS|retained_intron|CODING|ENST00000566563||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	27:0:0:0:26,26:0,0:1,1:0,0	52:3:0:0:33,34:1,3:15,16:0,0
16	88937278	.	G	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||567|CBFA2T3|protein_coding|CODING|ENST00000327483||1),DOWNSTREAM(MODIFIER||||567|CBFA2T3|protein_coding|CODING|ENST00000360302||1),DOWNSTREAM(MODIFIER||||577|CBFA2T3|protein_coding|CODING|ENST00000448839||1),DOWNSTREAM(MODIFIER||||615|CBFA2T3|protein_coding|CODING|ENST00000436887||1),DOWNSTREAM(MODIFIER||||653|CBFA2T3|protein_coding|CODING|ENST00000268679||1),DOWNSTREAM(MODIFIER|||||CBFA2T3|retained_intron|CODING|ENST00000563856||1),INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER||||255|PABPN1L|protein_coding|CODING|ENST00000411789||1),UPSTREAM(MODIFIER||||265|PABPN1L|protein_coding|CODING|ENST00000547152||1),UPSTREAM(MODIFIER||||278|PABPN1L|protein_coding|CODING|ENST00000419291||1),UPSTREAM(MODIFIER||||289|PABPN1L|protein_coding|CODING|ENST00000378358||1),UPSTREAM(MODIFIER||||297|PABPN1L|protein_coding|CODING|ENST00000427766||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:1:0:0:0,0:0,0:30,31:0,0	89:0:0:0:5,5:0,0:84,85:0,0
16	89022430	rs117749533	A	C	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||413|RP11-830F9.6|protein_coding|CODING|ENST00000378347||1),INTRON(MODIFIER||||129|CBFA2T3|protein_coding|CODING|ENST00000563640|1|1),INTRON(MODIFIER||||21|CBFA2T3|protein_coding|CODING|ENST00000570046|1|1),INTRON(MODIFIER||||567|CBFA2T3|protein_coding|CODING|ENST00000360302|1|1),INTRON(MODIFIER||||577|CBFA2T3|protein_coding|CODING|ENST00000448839|1|1),INTRON(MODIFIER||||615|CBFA2T3|protein_coding|CODING|ENST00000436887|1|1),INTRON(MODIFIER||||653|CBFA2T3|protein_coding|CODING|ENST00000268679|1|1);RSPOS=89022430;GMAF=0.0334;dbSNPBuildID=132;SSR=0;SAO=0;VP=050000080005040014000100;GENEINFO=CBFA2T3:863;WGT=1;VC=SNV;INT;ASP;VLD;KGPhase1;KGPROD	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:0:0:0:36,36:0,0:1,1:0,0	85:5:0:0:68,69:12,17:0,0:0,0
16	89075162	.	C	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->CG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	28:2:0:0:0,0:26,40:0,1:0,0	24:1:0:0:0,0:17,40:6,7:0,0
16	89075166	.	T	G	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=TT->GT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:3:0:0:0,0:0,0:0,2:27,42	22:1:0:0:0,0:1,1:4,8:16,37
16	89143965	rs113814837	T	C	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=89143965;GMAF=0.0975;dbSNPBuildID=132;SSR=0;SAO=0;VP=050000000011040116000100;WGT=1;VC=SNV;OTH;VLD;GNO;KGPhase1;KGPROD;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:0:0:0:0,0:1,1:0,0:30,31	76:2:0:0:1,1:17,21:0,0:56,62
16	89184595	.	A	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||104|ACSF3|protein_coding|CODING|ENST00000537895||1),INTRON(MODIFIER||||143|ACSF3|protein_coding|CODING|ENST00000538340|2|1),INTRON(MODIFIER||||189|ACSF3|protein_coding|CODING|ENST00000540697|4|1),INTRON(MODIFIER||||234|ACSF3|protein_coding|CODING|ENST00000544543|4|1),INTRON(MODIFIER||||311|ACSF3|protein_coding|CODING|ENST00000378345|4|1),INTRON(MODIFIER||||576|ACSF3|protein_coding|CODING|ENST00000317447|6|1),INTRON(MODIFIER||||576|ACSF3|protein_coding|CODING|ENST00000406948|5|1),INTRON(MODIFIER|||||ACSF3|nonsense_mediated_decay|CODING|ENST00000542688|4|1),INTRON(MODIFIER|||||ACSF3|processed_transcript|CODING|ENST00000562204|1|1),UPSTREAM(MODIFIER|||||CTD-2555A7.3|antisense|NON_CODING|ENST00000562782||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:2:0:0:28,29:1,1:0,0:0,1	64:2:0:0:55,56:0,0:7,10:0,0
16	89395475	rs144399754	C	T	.	PASS	NT=ref;QSS=23;QSS_NT=23;SGT=CC->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=DOWNSTREAM(MODIFIER|||||AC137932.6|antisense|NON_CODING|ENST00000562995||1),DOWNSTREAM(MODIFIER|||||AC137932.6|antisense|NON_CODING|ENST00000565667||1),INTRON(MODIFIER||||2663|ANKRD11|protein_coding|CODING|ENST00000301030|2|1),INTRON(MODIFIER||||2663|ANKRD11|protein_coding|CODING|ENST00000378330|3|1),INTRON(MODIFIER|||||ANKRD11|nonsense_mediated_decay|CODING|ENST00000378332|2|1),INTRON(MODIFIER|||||ANKRD11|processed_transcript|CODING|ENST00000562816|2|1),INTRON(MODIFIER|||||ANKRD11|processed_transcript|CODING|ENST00000566858|1|1),UPSTREAM(MODIFIER||||124|ANKRD11|protein_coding|CODING|ENST00000563291||1);RSPOS=89395475;GMAF=0.0092;dbSNPBuildID=134;SSR=0;SAO=0;VP=050000080005000014000100;GENEINFO=ANKRD11:29123;WGT=1;VC=SNV;INT;ASP;KGPhase1;KGPROD	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	57:2:0:0:0,0:55,59:0,0:0,0	75:4:0:0:0,0:67,71:0,1:4,4
16	89530625	.	T	C	.	PASS	NT=ref;QSS=24;QSS_NT=24;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||2663|ANKRD11|protein_coding|CODING|ENST00000301030|1|1),INTRON(MODIFIER||||2663|ANKRD11|protein_coding|CODING|ENST00000378330|1|1),INTRON(MODIFIER|||||ANKRD11|nonsense_mediated_decay|CODING|ENST00000378332|1|1),INTRON(MODIFIER|||||ANKRD11|processed_transcript|CODING|ENST00000562816|1|1),INTRON(MODIFIER|||||ANKRD11|processed_transcript|CODING|ENST00000566973|1|1),INTRON(MODIFIER|||||ANKRD11|processed_transcript|CODING|ENST00000568512|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:0:0:0:0,0:0,0:0,0:33,33	78:4:0:0:0,0:13,14:0,0:61,66
16	89602717	rs113521406	G	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||SPG7|retained_intron|CODING|ENST00000564409||1),DOWNSTREAM(MODIFIER|||||SPG7|retained_intron|CODING|ENST00000567138||1),INTRON(MODIFIER||||489|SPG7|protein_coding|CODING|ENST00000341316|9|1),INTRON(MODIFIER||||795|SPG7|protein_coding|CODING|ENST00000268704|9|1),INTRON(MODIFIER|||||SPG7|retained_intron|CODING|ENST00000561945|2|1),INTRON(MODIFIER|||||SPG7|retained_intron|CODING|ENST00000563218|1|1),UPSTREAM(MODIFIER|||||U7|snRNA|NON_CODING|ENST00000516770||1);RSPOS=89602717;dbSNPBuildID=132;SSR=0;SAO=0;VP=050000080001000102000100;GENEINFO=SPG7:6687;WGT=1;VC=SNV;INT;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:1:0:0:0,0:0,0:31,32:0,0	90:4:0:0:0,0:4,5:82,89:0,0
16	89602725	rs62071463	G	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||SPG7|retained_intron|CODING|ENST00000564409||1),DOWNSTREAM(MODIFIER|||||SPG7|retained_intron|CODING|ENST00000567138||1),INTRON(MODIFIER||||489|SPG7|protein_coding|CODING|ENST00000341316|9|1),INTRON(MODIFIER||||795|SPG7|protein_coding|CODING|ENST00000268704|9|1),INTRON(MODIFIER|||||SPG7|retained_intron|CODING|ENST00000561945|2|1),INTRON(MODIFIER|||||SPG7|retained_intron|CODING|ENST00000563218|1|1),UPSTREAM(MODIFIER|||||U7|snRNA|NON_CODING|ENST00000516770||1);RSPOS=89602725;dbSNPBuildID=129;SSR=0;SAO=0;VP=050100080005040102000100;GENEINFO=SPG7:6687;WGT=1;VC=SNV;SLO;INT;ASP;VLD;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:1:0:0:0,0:0,0:29,30:0,0	97:5:0:0:0,0:0,0:85,93:7,8
16	89647225	.	A	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||558|CPNE7|protein_coding|CODING|ENST00000319518|2|1),INTRON(MODIFIER||||633|CPNE7|protein_coding|CODING|ENST00000268720|3|1),INTRON(MODIFIER|||||CPNE7|nonsense_mediated_decay|CODING|ENST00000525982|2|1),UPSTREAM(MODIFIER|||||CPNE7|retained_intron|CODING|ENST00000532500||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:5:0:0:29,33:0,1:0,1:0,0	51:5:0:0:39,41:7,10:0,0:0,0
16	89721843	rs2460450	C	T	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||132|CHMP1A|protein_coding|CODING|ENST00000535997|1|1),INTRON(MODIFIER||||187|CHMP1A|protein_coding|CODING|ENST00000550102|1|1),INTRON(MODIFIER||||196|CHMP1A|protein_coding|CODING|ENST00000397901|1|1),INTRON(MODIFIER||||240|CHMP1A|protein_coding|CODING|ENST00000253475|1|1),INTRON(MODIFIER|||||CHMP1A|nonsense_mediated_decay|CODING|ENST00000549328|1|1),INTRON(MODIFIER|||||CHMP1A|processed_transcript|CODING|ENST00000547614|1|1),INTRON(MODIFIER|||||CHMP1A|retained_intron|CODING|ENST00000550872|1|1),INTRON(MODIFIER|||||CHMP1A|retained_intron|CODING|ENST00000551981|1|1),UPSTREAM(MODIFIER||||139|C16orf55|protein_coding|CODING|ENST00000301031||1),UPSTREAM(MODIFIER||||140|C16orf55|protein_coding|CODING|ENST00000579310||1),UPSTREAM(MODIFIER||||146|C16orf55|protein_coding|CODING|ENST00000566204||1),UPSTREAM(MODIFIER||||42|C16orf55|protein_coding|CODING|ENST00000568929||1),UPSTREAM(MODIFIER|||||C16orf55|nonsense_mediated_decay|CODING|ENST00000565890||1);RSPOS=89721843;RV;dbSNPBuildID=100;SSR=0;SAO=0;VP=050000080005040102000100;GENEINFO=CHMP1A:5119;WGT=1;VC=SNV;INT;ASP;VLD;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:3:0:0:0,0:33,36:0,0:0,0	56:3:0:0:0,0:45,46:0,0:8,10
16	90215447	.	T	C	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||U6|snRNA|NON_CODING|ENST00000410427||1),INTRON(MODIFIER|||||FAM157C|processed_transcript|NON_CODING|ENST00000561805|1|1),INTRON(MODIFIER|||||FAM157C|processed_transcript|NON_CODING|ENST00000568070|2|1),INTRON(MODIFIER|||||RP11-356C4.5|processed_transcript|NON_CODING|ENST00000565965|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:0:0:0:0,0:0,0:0,0:37,39	82:0:0:0:0,0:9,10:0,0:73,78
17	521794	.	T	C	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||RP11-411G7.2|processed_pseudogene|NON_CODING|ENST00000574104||1),INTRON(MODIFIER||||145|VPS53|protein_coding|CODING|ENST00000574029|3|1),INTRON(MODIFIER||||237|VPS53|protein_coding|CODING|ENST00000570650|3|1),INTRON(MODIFIER||||422|VPS53|protein_coding|CODING|ENST00000401468|4|1),INTRON(MODIFIER||||501|VPS53|protein_coding|CODING|ENST00000446250|12|1),INTRON(MODIFIER||||670|VPS53|protein_coding|CODING|ENST00000291074|10|1),INTRON(MODIFIER||||699|VPS53|protein_coding|CODING|ENST00000571805|11|1),INTRON(MODIFIER||||832|VPS53|protein_coding|CODING|ENST00000437048|11|1),INTRON(MODIFIER|||||VPS53|nonsense_mediated_decay|CODING|ENST00000389040|10|1),INTRON(MODIFIER|||||VPS53|nonsense_mediated_decay|CODING|ENST00000573028|12|1),INTRON(MODIFIER|||||VPS53|processed_transcript|CODING|ENST00000576149|5|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:2:0:0:0,0:0,0:0,0:37,39	62:5:0:0:0,0:9,14:1,1:47,50
17	521797	.	G	C	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||RP11-411G7.2|processed_pseudogene|NON_CODING|ENST00000574104||1),INTRON(MODIFIER||||145|VPS53|protein_coding|CODING|ENST00000574029|3|1),INTRON(MODIFIER||||237|VPS53|protein_coding|CODING|ENST00000570650|3|1),INTRON(MODIFIER||||422|VPS53|protein_coding|CODING|ENST00000401468|4|1),INTRON(MODIFIER||||501|VPS53|protein_coding|CODING|ENST00000446250|12|1),INTRON(MODIFIER||||670|VPS53|protein_coding|CODING|ENST00000291074|10|1),INTRON(MODIFIER||||699|VPS53|protein_coding|CODING|ENST00000571805|11|1),INTRON(MODIFIER||||832|VPS53|protein_coding|CODING|ENST00000437048|11|1),INTRON(MODIFIER|||||VPS53|nonsense_mediated_decay|CODING|ENST00000389040|10|1),INTRON(MODIFIER|||||VPS53|nonsense_mediated_decay|CODING|ENST00000573028|12|1),INTRON(MODIFIER|||||VPS53|processed_transcript|CODING|ENST00000576149|5|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:2:0:0:0,0:0,0:37,39:0,0	59:4:0:0:0,1:6,9:49,52:0,0
17	522557	rs138826126	G	A	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||RP11-411G7.2|processed_pseudogene|NON_CODING|ENST00000574104||1),INTRON(MODIFIER||||145|VPS53|protein_coding|CODING|ENST00000574029|3|1),INTRON(MODIFIER||||237|VPS53|protein_coding|CODING|ENST00000570650|3|1),INTRON(MODIFIER||||422|VPS53|protein_coding|CODING|ENST00000401468|4|1),INTRON(MODIFIER||||501|VPS53|protein_coding|CODING|ENST00000446250|12|1),INTRON(MODIFIER||||670|VPS53|protein_coding|CODING|ENST00000291074|10|1),INTRON(MODIFIER||||699|VPS53|protein_coding|CODING|ENST00000571805|11|1),INTRON(MODIFIER||||832|VPS53|protein_coding|CODING|ENST00000437048|11|1),INTRON(MODIFIER|||||VPS53|nonsense_mediated_decay|CODING|ENST00000389040|10|1),INTRON(MODIFIER|||||VPS53|nonsense_mediated_decay|CODING|ENST00000573028|12|1),INTRON(MODIFIER|||||VPS53|processed_transcript|CODING|ENST00000576149|5|1);RSPOS=522557;dbSNPBuildID=134;SSR=0;SAO=0;VP=050000080005000002000100;GENEINFO=VPS53:55275;WGT=1;VC=SNV;INT;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:0:0:0:0,0:0,0:36,38:0,0	49:1:0:0:6,6:0,0:42,50:0,0
17	683329	.	A	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||226|GLOD4|protein_coding|CODING|ENST00000576419|1|1),INTRON(MODIFIER||||289|GLOD4|protein_coding|CODING|ENST00000536578|2|1),INTRON(MODIFIER||||298|GLOD4|protein_coding|CODING|ENST00000301329|1|1),INTRON(MODIFIER||||313|GLOD4|protein_coding|CODING|ENST00000301328|2|1),INTRON(MODIFIER|||||GLOD4|nonsense_mediated_decay|CODING|ENST00000572220|1|1),INTRON(MODIFIER|||||GLOD4|nonsense_mediated_decay|CODING|ENST00000574554|2|1),INTRON(MODIFIER|||||GLOD4|nonsense_mediated_decay|CODING|ENST00000574581|2|1),INTRON(MODIFIER|||||GLOD4|nonsense_mediated_decay|CODING|ENST00000575790|1|1),INTRON(MODIFIER|||||GLOD4|nonsense_mediated_decay|CODING|ENST00000575851|1|1),INTRON(MODIFIER|||||GLOD4|nonsense_mediated_decay|CODING|ENST00000576670|1|1),INTRON(MODIFIER|||||GLOD4|retained_intron|CODING|ENST00000574354|1|1),INTRON(MODIFIER|||||GLOD4|retained_intron|CODING|ENST00000576239|1|1),INTRON(MODIFIER|||||GLOD4|retained_intron|CODING|ENST00000576750|2|1),UPSTREAM(MODIFIER||||420|RNMTL1|protein_coding|CODING|ENST00000304478||1),UPSTREAM(MODIFIER|||||GLOD4|retained_intron|CODING|ENST00000571073||1),UPSTREAM(MODIFIER|||||RNMTL1|nonsense_mediated_decay|CODING|ENST00000574509||1),UPSTREAM(MODIFIER|||||RNMTL1|retained_intron|CODING|ENST00000574916||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	28:0:0:0:28,29:0,0:0,0:0,0	77:1:0:0:71,72:0,0:5,5:0,0
17	852064	rs9747533	G	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||435|NXN|protein_coding|CODING|ENST00000336868|1|1),INTRON(MODIFIER|||||NXN|retained_intron|CODING|ENST00000575171|1|1);RSPOS=852064;dbSNPBuildID=119;SSR=0;SAO=0;VP=050000080005000102000100;GENEINFO=NXN:64359;WGT=1;VC=SNV;INT;ASP;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	17:0:1:0:0,0:0,2:17,25:0,0	51:2:0:0:0,0:10,18:39,45:0,0
17	890774	.	G	A	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	41:5:0:0:0,0:0,0:36,42:0,0	75:4:0:0:6,6:0,0:65,70:0,0
17	894988	.	G	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:1:0:0:0,0:0,0:34,35:0,0	75:3:0:0:8,10:0,0:64,69:0,0
17	1118927	.	C	G	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||128|ABR|protein_coding|CODING|ENST00000574139|1|1),INTRON(MODIFIER||||132|ABR|protein_coding|CODING|ENST00000575934|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	41:2:0:0:0,0:39,41:0,0:0,0	85:1:0:0:2,2:74,78:8,8:0,0
17	1167241	.	A	C	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:2:0:0:37,38:0,0:0,1:0,0	56:2:0:0:47,48:7,7:0,2:0,0
17	1188970	.	T	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||177|TUSC5|protein_coding|CODING|ENST00000333813|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:1:0:0:0,0:0,0:0,0:37,38	75:4:0:0:1,1:5,6:0,1:65,67
17	1777306	rs7208205	A	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||123|RPA1|protein_coding|CODING|ENST00000571058||1),INTRON(MODIFIER||||152|RPA1|protein_coding|CODING|ENST00000570451|6|1),INTRON(MODIFIER||||616|RPA1|protein_coding|CODING|ENST00000254719|6|1),INTRON(MODIFIER|||||RPA1|processed_transcript|CODING|ENST00000573924|2|1);RSPOS=1777306;dbSNPBuildID=116;SSR=0;SAO=0;VP=050000080001000002000100;GENEINFO=RPA1:6117;WGT=1;VC=SNV;INT;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:1:3:0:28,29:0,0:1,1:0,0	56:1:6:0:48,50:0,0:0,0:7,7
17	2971009	rs199730451	C	T	.	PASS	NT=ref;QSS=27;QSS_NT=27;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER||||312|OR1D5|protein_coding|CODING|ENST00000575751||1),UPSTREAM(MODIFIER|||||OR1D5|pseudogene|NON_CODING|ENST00000333466||1);RSPOS=2971009;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:0:0:0:0,0:29,29:0,0:0,0	40:0:0:0:0,0:31,32:0,0:9,10
17	3692100	.	A	T	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1179|ITGAE|protein_coding|CODING|ENST00000263087|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:0:0:0:40,40:0,0:0,0:0,0	110:2:0:0:100,113:0,0:0,0:8,9
17	3752689	.	T	A	.	PASS	NT=ref;QSS=24;QSS_NT=24;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER||||340|C17orf85|protein_coding|CODING|ENST00000158149||1),UPSTREAM(MODIFIER||||620|C17orf85|protein_coding|CODING|ENST00000389005||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	48:0:0:0:0,0:0,0:0,0:48,48	74:2:0:0:5,6:0,0:1,1:66,68
17	4203998	.	A	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||170|UBE2G1|protein_coding|CODING|ENST00000396981|2|1),INTRON(MODIFIER||||5|UBE2G1|protein_coding|CODING|ENST00000574059|4|1),INTRON(MODIFIER||||77|UBE2G1|protein_coding|CODING|ENST00000571953|2|1),INTRON(MODIFIER||||99|UBE2G1|protein_coding|CODING|ENST00000572484|3|1),INTRON(MODIFIER|||||UBE2G1|nonsense_mediated_decay|CODING|ENST00000571980|2|1),INTRON(MODIFIER|||||UBE2G1|nonsense_mediated_decay|CODING|ENST00000574633|2|1),UPSTREAM(MODIFIER|||||RP11-104O19.2|processed_pseudogene|NON_CODING|ENST00000576210||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:1:0:0:30,32:1,1:0,0:0,0	67:1:0:0:61,64:1,1:4,4:0,0
17	4264300	.	C	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||Metazoa_SRP|misc_RNA|NON_CODING|ENST00000577467||1),INTRON(MODIFIER||||170|UBE2G1|protein_coding|CODING|ENST00000396981|1|1),INTRON(MODIFIER||||99|UBE2G1|protein_coding|CODING|ENST00000572484|1|1),INTRON(MODIFIER|||||UBE2G1|nonsense_mediated_decay|CODING|ENST00000571980|1|1),INTRON(MODIFIER|||||UBE2G1|nonsense_mediated_decay|CODING|ENST00000574633|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:0:0:0:0,0:31,31:0,0:0,0	74:1:0:0:0,0:67,68:0,0:6,6
17	4470016	rs113943737	C	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-141J13.3|processed_transcript|NON_CODING|ENST00000574133|1|1);RSPOS=4470016;GMAF=0.1328;dbSNPBuildID=132;SSR=0;SAO=0;VP=050000000005000116000100;WGT=1;VC=SNV;ASP;GNO;KGPhase1;KGPROD;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:0:0:0:0,0:30,30:0,0:0,0	82:1:0:0:0,0:71,72:0,0:10,10
17	4724162	rs184500150	C	T	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||196|PLD2|protein_coding|CODING|ENST00000576983||1),DOWNSTREAM(MODIFIER|||||PLD2|nonsense_mediated_decay|CODING|ENST00000575246||1),DOWNSTREAM(MODIFIER|||||PLD2|retained_intron|CODING|ENST00000571273||1),DOWNSTREAM(MODIFIER|||||PLD2|retained_intron|CODING|ENST00000572127||1),DOWNSTREAM(MODIFIER|||||PLD2|retained_intron|CODING|ENST00000572199||1),DOWNSTREAM(MODIFIER|||||PLD2|retained_intron|CODING|ENST00000573258||1),DOWNSTREAM(MODIFIER|||||PLD2|retained_intron|CODING|ENST00000574796||1),DOWNSTREAM(MODIFIER|||||PLD2|retained_intron|CODING|ENST00000576329||1),INTRON(MODIFIER||||922|PLD2|protein_coding|CODING|ENST00000572940|23|1),INTRON(MODIFIER||||933|PLD2|protein_coding|CODING|ENST00000263088|23|1),UPSTREAM(MODIFIER|||||PLD2|retained_intron|CODING|ENST00000575945||1);RSPOS=4724162;GMAF=0.022;dbSNPBuildID=135;SSR=0;SAO=0;VP=050000080005000014000100;GENEINFO=PLD2:5338;WGT=1;VC=SNV;INT;ASP;KGPhase1;KGPROD	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:3:0:0:0,0:37,42:0,0:0,0	63:1:0:0:0,0:57,62:0,0:5,5
17	5526132	rs112471329	T	C	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER||||34|NLRP1|protein_coding|CODING|ENST00000576905||1),UPSTREAM(MODIFIER|||||NLRP1|processed_transcript|CODING|ENST00000572143||1);RSPOS=5526132;dbSNPBuildID=132;SSR=0;SAO=0;VP=050000000005000102000100;WGT=1;VC=SNV;ASP;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:0:0:0:0,0:0,1:0,0:40,54	108:1:0:0:0,0:7,8:0,0:100,124
17	6432730	.	T	C	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||938|PITPNM3|protein_coding|CODING|ENST00000421306|2|1),INTRON(MODIFIER||||974|PITPNM3|protein_coding|CODING|ENST00000262483|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:0:0:0:1,1:0,0:0,0:33,33	66:1:0:0:0,0:7,8:0,0:58,58
17	8148137	.	G	A	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1217|CTC1|protein_coding|CODING|ENST00000315684|1|1),INTRON(MODIFIER|||||CTC1|nonsense_mediated_decay|CODING|ENST00000449476|1|1),INTRON(MODIFIER|||||CTC1|processed_transcript|CODING|ENST00000581671|1|1),UPSTREAM(MODIFIER||||102|PFAS|protein_coding|CODING|ENST00000581242||1),UPSTREAM(MODIFIER||||1338|PFAS|protein_coding|CODING|ENST00000314666||1),UPSTREAM(MODIFIER||||134|PFAS|protein_coding|CODING|ENST00000584044||1),UPSTREAM(MODIFIER||||86|PFAS|protein_coding|CODING|ENST00000585183||1),UPSTREAM(MODIFIER||||914|PFAS|protein_coding|CODING|ENST00000545834||1),UPSTREAM(MODIFIER|||||CTC1|retained_intron|CODING|ENST00000584842||1),UPSTREAM(MODIFIER|||||PFAS|nonsense_mediated_decay|CODING|ENST00000580356||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:1:0:0:0,0:0,0:34,35:0,0	77:0:0:0:7,7:0,0:70,70:0,0
17	8313220	.	A	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER||||144|NDEL1|protein_coding|CODING|ENST00000582812||1),UPSTREAM(MODIFIER|||||NDEL1|nonsense_mediated_decay|CODING|ENST00000580237||1),UPSTREAM(MODIFIER|||||NDEL1|processed_transcript|CODING|ENST00000579150||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	27:1:0:0:26,26:0,0:0,0:0,1	63:2:0:0:55,56:0,0:6,8:0,0
17	8474220	.	T	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1976|MYH10|protein_coding|CODING|ENST00000269243|5|1),INTRON(MODIFIER||||1992|MYH10|protein_coding|CODING|ENST00000379980|6|1),INTRON(MODIFIER||||1997|MYH10|protein_coding|CODING|ENST00000396239|5|1),INTRON(MODIFIER||||2007|MYH10|protein_coding|CODING|ENST00000360416|6|1),INTRON(MODIFIER|||||MYH10|retained_intron|CODING|ENST00000472728|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	28:0:0:0:0,0:0,0:0,0:28,29	65:1:0:0:8,8:0,0:0,0:56,57
17	9334608	.	G	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||125|STX8|protein_coding|CODING|ENST00000574431|5|1),INTRON(MODIFIER||||236|STX8|protein_coding|CODING|ENST00000306357|6|1),INTRON(MODIFIER|||||STX8|nonsense_mediated_decay|CODING|ENST00000575294|3|1),INTRON(MODIFIER|||||STX8|nonsense_mediated_decay|CODING|ENST00000575858|4|1),INTRON(MODIFIER|||||STX8|processed_transcript|CODING|ENST00000570583|1|1),INTRON(MODIFIER|||||STX8|retained_intron|CODING|ENST00000574775|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:3:0:0:1,1:0,0:26,29:0,0	53:1:0:0:1,1:7,7:43,44:1,1
17	9612212	.	G	T	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1118|USP43|protein_coding|CODING|ENST00000570475|12|1),INTRON(MODIFIER||||1123|USP43|protein_coding|CODING|ENST00000285199|12|1),INTRON(MODIFIER||||812|USP43|protein_coding|CODING|ENST00000570827|12|1),INTRON(MODIFIER|||||USP43|nonsense_mediated_decay|CODING|ENST00000574408|10|1),INTRON(MODIFIER|||||USP43|retained_intron|CODING|ENST00000573955|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:0:0:0:0,0:0,0:39,39:0,0	92:4:0:0:0,0:0,0:84,88:4,4
17	9640553	.	T	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	16:0:0:0:1,1:0,0:0,0:15,15	42:0:0:0:0,0:0,0:11,11:31,31
17	9936367	.	G	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||105|GAS7|protein_coding|CODING|ENST00000580043|1|1),INTRON(MODIFIER||||127|GAS7|protein_coding|CODING|ENST00000584389|1|1),INTRON(MODIFIER||||140|GAS7|protein_coding|CODING|ENST00000578599|1|1),INTRON(MODIFIER||||178|GAS7|protein_coding|CODING|ENST00000584146|1|1),INTRON(MODIFIER||||181|GAS7|protein_coding|CODING|ENST00000540214|1|1),INTRON(MODIFIER||||412|GAS7|protein_coding|CODING|ENST00000323816|2|1),INTRON(MODIFIER||||412|GAS7|protein_coding|CODING|ENST00000585266|1|1),INTRON(MODIFIER||||416|GAS7|protein_coding|CODING|ENST00000396115|1|1),INTRON(MODIFIER||||416|GAS7|protein_coding|CODING|ENST00000537970|1|1),INTRON(MODIFIER||||476|GAS7|protein_coding|CODING|ENST00000432992|1|1),INTRON(MODIFIER|||||GAS7|processed_transcript|CODING|ENST00000578655|1|1),INTRON(MODIFIER|||||GAS7|processed_transcript|CODING|ENST00000579140|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:3:0:0:0,0:0,0:34,37:0,0	58:0:0:0:0,0:0,0:54,54:4,4
17	10380367	.	C	A	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||163|MYH2|protein_coding|CODING|ENST00000532288|3|1),INTRON(MODIFIER|||||CTC-297N7.7|antisense|NON_CODING|ENST00000399342|2|1),INTRON(MODIFIER|||||CTC-297N7.7|antisense|NON_CODING|ENST00000581304|2|1),INTRON(MODIFIER|||||CTC-297N7.7|antisense|NON_CODING|ENST00000587182|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:0:0:0:0,0:36,36:0,0:0,0	82:2:0:0:4,4:76,78:0,0:0,0
17	10403682	.	T	A	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||163|MYH2|protein_coding|CODING|ENST00000532288|3|1),INTRON(MODIFIER||||1939|MYH1|protein_coding|CODING|ENST00000226207|28|1),INTRON(MODIFIER|||||CTC-297N7.7|antisense|NON_CODING|ENST00000399342|2|1),INTRON(MODIFIER|||||CTC-297N7.7|antisense|NON_CODING|ENST00000581304|2|1),INTRON(MODIFIER|||||CTC-297N7.7|antisense|NON_CODING|ENST00000587182|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:1:0:0:0,0:0,0:0,0:31,32	64:1:0:0:8,9:0,0:0,0:55,55
17	10591800	.	G	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||22|SCO1|protein_coding|CODING|ENST00000582053||1),DOWNSTREAM(MODIFIER|||||CTC-297N7.10|antisense|NON_CODING|ENST00000584139||1),DOWNSTREAM(MODIFIER|||||SCO1|nonsense_mediated_decay|CODING|ENST00000577335||1),INTRON(MODIFIER||||270|SCO1|protein_coding|CODING|ENST00000577427|4|1),INTRON(MODIFIER||||301|SCO1|protein_coding|CODING|ENST00000255390|4|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:3:0:0:0,0:0,0:32,35:0,0	58:0:0:0:0,0:5,5:53,53:0,0
17	11706698	rs186891072	T	G	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||4410|DNAH9|protein_coding|CODING|ENST00000454412|43|1),INTRON(MODIFIER||||4486|DNAH9|protein_coding|CODING|ENST00000262442|43|1);RSPOS=11706698;GMAF=0.0531;dbSNPBuildID=135;SSR=0;SAO=0;VP=050000080001000416000100;GENEINFO=DNAH9:1770;WGT=1;VC=SNV;INT;HD;KGPhase1;KGPROD;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:0:0:0:0,0:0,0:0,0:37,38	56:1:0:0:0,0:0,0:7,8:48,48
17	11757354	.	C	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=EXON(MODIFIER|||||DNAH9|processed_transcript|CODING|ENST00000578834|2|1),NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|cCg/cTg|P3181L|4410|DNAH9|protein_coding|CODING|ENST00000454412|50|1),NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|cCg/cTg|P3181L|4486|DNAH9|protein_coding|CODING|ENST00000262442|50|1),UPSTREAM(MODIFIER||||283|DNAH9|protein_coding|CODING|ENST00000579703||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:1:0:0:0,0:31,32:0,0:0,0	77:1:0:0:0,0:70,71:0,0:6,6
17	11790370	.	A	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||4410|DNAH9|protein_coding|CODING|ENST00000454412|57|1),INTRON(MODIFIER||||4486|DNAH9|protein_coding|CODING|ENST00000262442|57|1),INTRON(MODIFIER||||798|DNAH9|protein_coding|CODING|ENST00000396001|3|1),INTRON(MODIFIER|||||DNAH9|processed_transcript|CODING|ENST00000581682|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:0:0:0:30,30:0,0:0,0:0,0	63:1:0:0:55,56:7,8:0,0:0,0
17	15069402	rs200404703	G	A	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=15069402;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:0:0:0:0,0:0,0:34,34:0,0	68:0:0:0:5,5:0,0:63,64:0,0
17	15069404	rs201449801	A	G	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=15069404;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:0:0:0:34,34:0,0:0,0:0,0	71:0:0:0:66,67:0,0:5,5:0,0
17	15859236	.	A	G	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||332|ADORA2B|protein_coding|CODING|ENST00000304222|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:1:0:0:31,32:1,1:0,0:0,0	64:1:0:0:56,57:0,0:7,8:0,0
17	16285320	.	G	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||RP11-138I1.4|antisense|NON_CODING|ENST00000583934||1),INTRON(MODIFIER|||||UBB|processed_transcript|CODING|ENST00000578649|1|1),SYNONYMOUS_CODING(LOW|SILENT|aaG/aaA|K33|153|UBB|protein_coding|CODING|ENST00000535788|2|1),SYNONYMOUS_CODING(LOW|SILENT|aaG/aaA|K33|205|UBB|protein_coding|CODING|ENST00000577640|2|1),SYNONYMOUS_CODING(LOW|SILENT|aaG/aaA|K33|229|UBB|protein_coding|CODING|ENST00000302182|2|1),SYNONYMOUS_CODING(LOW|SILENT|aaG/aaA|K33|229|UBB|protein_coding|CODING|ENST00000395837|2|1),SYNONYMOUS_CODING(LOW|SILENT|aaG/aaA|K33|229|UBB|protein_coding|CODING|ENST00000395839|2|1),SYNONYMOUS_CODING(LOW|SILENT|aaG/aaA|K33|42|UBB|protein_coding|CODING|ENST00000577958|2|1),SYNONYMOUS_CODING(LOW|SILENT|aaG/aaA|K33|92|UBB|protein_coding|CODING|ENST00000578706|2|1),UPSTREAM(MODIFIER|||||UBB|nonsense_mediated_decay|CODING|ENST00000513764||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:2:0:0:0,0:0,0:28,33:0,0	86:2:0:0:9,9:0,0:75,77:0,0
17	17113539	rs139071122	G	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||579|FLCN|protein_coding|CODING|ENST00000285071||1),INTRON(MODIFIER|||||RP11-45M22.4|nonsense_mediated_decay|NON_CODING|ENST00000427497|9|1),UPSTREAM(MODIFIER||||252|PLD6|protein_coding|CODING|ENST00000321560||1);RSPOS=17113539;GMAF=0.0572;dbSNPBuildID=134;SSR=0;SAO=0;VP=050000000005000014000100;WGT=1;VC=SNV;ASP;KGPhase1;KGPROD	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:1:0:0:0,0:0,0:32,37:0,0	82:0:0:0:0,0:7,8:75,78:0,0
17	17504012	.	G	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-524F11.2|antisense|NON_CODING|ENST00000583662|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:1:0:0:0,0:0,0:30,31:0,0	78:0:0:0:7,7:0,0:71,71:0,0
17	17520847	.	A	G	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:2:0:0:37,39:0,0:0,0:0,0	77:1:0:0:70,71:0,0:6,7:0,0
17	17984324	.	C	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:0:0:0:0,0:36,36:0,0:0,0	71:1:0:0:0,0:66,69:0,0:4,4
17	18879240	.	G	A	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=EXON(MODIFIER|||||FAM83G|retained_intron|CODING|ENST00000399096|3|1),INTRON(MODIFIER||||560|SLC5A10|protein_coding|CODING|ENST00000417251|8|1),INTRON(MODIFIER||||566|SLC5A10|protein_coding|CODING|ENST00000317977|7|1),INTRON(MODIFIER||||566|SLC5A10|protein_coding|CODING|ENST00000395642|7|1),INTRON(MODIFIER||||569|SLC5A10|protein_coding|CODING|ENST00000395643|7|1),INTRON(MODIFIER||||596|SLC5A10|protein_coding|CODING|ENST00000395645|8|1),INTRON(MODIFIER||||612|SLC5A10|protein_coding|CODING|ENST00000395647|8|1),INTRON(MODIFIER||||823|FAM83G|protein_coding|CODING|ENST00000345041|5|1),INTRON(MODIFIER||||823|FAM83G|protein_coding|CODING|ENST00000388995|5|1),INTRON(MODIFIER||||823|FAM83G|protein_coding|CODING|ENST00000585154|4|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:1:0:0:0,0:0,0:36,38:0,0	78:1:0:0:5,5:0,0:72,77:0,0
17	18910854	.	T	A	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||560|SLC5A10|protein_coding|CODING|ENST00000417251|9|1),INTRON(MODIFIER||||566|SLC5A10|protein_coding|CODING|ENST00000317977|8|1),INTRON(MODIFIER||||566|SLC5A10|protein_coding|CODING|ENST00000395642|8|1),INTRON(MODIFIER||||569|SLC5A10|protein_coding|CODING|ENST00000395643|8|1),INTRON(MODIFIER||||596|SLC5A10|protein_coding|CODING|ENST00000395645|9|1),INTRON(MODIFIER||||612|SLC5A10|protein_coding|CODING|ENST00000395647|9|1),UPSTREAM(MODIFIER||||823|FAM83G|protein_coding|CODING|ENST00000345041||1),UPSTREAM(MODIFIER||||823|FAM83G|protein_coding|CODING|ENST00000388995||1),UPSTREAM(MODIFIER||||823|FAM83G|protein_coding|CODING|ENST00000585154||1),UPSTREAM(MODIFIER|||||FAM83G|retained_intron|CODING|ENST00000399096||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:0:0:0:0,0:0,0:1,1:33,33	94:0:0:0:9,9:0,0:0,0:85,85
17	19157258	.	A	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||19|EPN2|protein_coding|CODING|ENST00000584150|2|1),INTRON(MODIFIER||||21|EPN2|protein_coding|CODING|ENST00000583197|1|1),INTRON(MODIFIER||||250|EPN2|protein_coding|CODING|ENST00000494192|1|1),INTRON(MODIFIER||||31|EPN2|protein_coding|CODING|ENST00000582015|1|1),INTRON(MODIFIER||||349|EPN2|protein_coding|CODING|ENST00000575595|1|1),INTRON(MODIFIER||||356|EPN2|protein_coding|CODING|ENST00000395618|1|1),INTRON(MODIFIER||||37|EPN2|protein_coding|CODING|ENST00000581024|1|1),INTRON(MODIFIER||||38|EPN2|protein_coding|CODING|ENST00000584707|2|1),INTRON(MODIFIER||||408|EPN2|protein_coding|CODING|ENST00000395628|1|1),INTRON(MODIFIER||||584|EPN2|protein_coding|CODING|ENST00000347697|1|1),INTRON(MODIFIER||||641|EPN2|protein_coding|CODING|ENST00000314728|1|1),INTRON(MODIFIER||||74|EPN2|protein_coding|CODING|ENST00000584633|1|1),INTRON(MODIFIER||||94|EPN2|protein_coding|CODING|ENST00000577692|1|1),INTRON(MODIFIER|||||EPN2|nonsense_mediated_decay|CODING|ENST00000580579|1|1),INTRON(MODIFIER|||||EPN2|processed_transcript|CODING|ENST00000441293|1|1),INTRON(MODIFIER|||||EPN2|processed_transcript|CODING|ENST00000577244|2|1),INTRON(MODIFIER|||||EPN2|processed_transcript|CODING|ENST00000582234|2|1),INTRON(MODIFIER|||||EPN2|processed_transcript|CODING|ENST00000582659|1|1),INTRON(MODIFIER|||||EPN2|processed_transcript|CODING|ENST00000582969|1|1),UPSTREAM(MODIFIER||||61|EPN2|protein_coding|CODING|ENST00000577195||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:1:0:0:29,31:0,0:0,0:0,0	89:3:0:0:81,85:0,0:5,6:0,0
17	19165684	.	A	G	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||19|EPN2|protein_coding|CODING|ENST00000584150|2|1),INTRON(MODIFIER||||21|EPN2|protein_coding|CODING|ENST00000583197|1|1),INTRON(MODIFIER||||250|EPN2|protein_coding|CODING|ENST00000494192|1|1),INTRON(MODIFIER||||31|EPN2|protein_coding|CODING|ENST00000582015|1|1),INTRON(MODIFIER||||349|EPN2|protein_coding|CODING|ENST00000575595|1|1),INTRON(MODIFIER||||356|EPN2|protein_coding|CODING|ENST00000395618|1|1),INTRON(MODIFIER||||37|EPN2|protein_coding|CODING|ENST00000581024|1|1),INTRON(MODIFIER||||38|EPN2|protein_coding|CODING|ENST00000584707|2|1),INTRON(MODIFIER||||408|EPN2|protein_coding|CODING|ENST00000395628|1|1),INTRON(MODIFIER||||584|EPN2|protein_coding|CODING|ENST00000347697|1|1),INTRON(MODIFIER||||61|EPN2|protein_coding|CODING|ENST00000577195|1|1),INTRON(MODIFIER||||641|EPN2|protein_coding|CODING|ENST00000314728|1|1),INTRON(MODIFIER||||74|EPN2|protein_coding|CODING|ENST00000584633|1|1),INTRON(MODIFIER||||94|EPN2|protein_coding|CODING|ENST00000577692|1|1),INTRON(MODIFIER|||||EPN2|nonsense_mediated_decay|CODING|ENST00000580579|1|1),INTRON(MODIFIER|||||EPN2|processed_transcript|CODING|ENST00000441293|1|1),INTRON(MODIFIER|||||EPN2|processed_transcript|CODING|ENST00000577244|2|1),INTRON(MODIFIER|||||EPN2|processed_transcript|CODING|ENST00000582234|2|1),INTRON(MODIFIER|||||EPN2|processed_transcript|CODING|ENST00000582659|1|1),INTRON(MODIFIER|||||EPN2|processed_transcript|CODING|ENST00000582969|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	44:0:0:0:44,44:0,0:0,0:0,0	84:1:1:0:76,79:0,0:7,7:0,0
17	19396588	.	A	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||CTB-187M2.3|lincRNA|NON_CODING|ENST00000582654||1),UPSTREAM(MODIFIER|||||RPL17P43|processed_pseudogene|NON_CODING|ENST00000422360||1),UPSTREAM(MODIFIER|||||SLC47A1|processed_transcript|CODING|ENST00000584348||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:0:1:0:29,29:0,0:0,0:0,0	65:1:0:0:58,60:0,0:6,6:0,0
17	19623256	.	A	G	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=EXON(MODIFIER|||||RP11-311F12.1|lincRNA|NON_CODING|ENST00000577087|1|1),UPSTREAM(MODIFIER||||362|SLC47A2|protein_coding|CODING|ENST00000433844||1),UPSTREAM(MODIFIER||||580|SLC47A2|protein_coding|CODING|ENST00000350657||1),UPSTREAM(MODIFIER||||602|SLC47A2|protein_coding|CODING|ENST00000325411||1),UPSTREAM(MODIFIER|||||SLC47A2|nonsense_mediated_decay|CODING|ENST00000574239||1),UPSTREAM(MODIFIER|||||SLC47A2|processed_transcript|CODING|ENST00000463318||1),UPSTREAM(MODIFIER|||||SLC47A2|retained_intron|CODING|ENST00000456947||1),UPSTREAM(MODIFIER|||||SLC47A2|retained_intron|CODING|ENST00000467379||1),UPSTREAM(MODIFIER|||||SLC47A2|retained_intron|CODING|ENST00000467609||1),UPSTREAM(MODIFIER|||||SLC47A2|retained_intron|CODING|ENST00000483510||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:0:0:0:34,34:1,1:0,0:0,0	69:1:0:0:63,64:0,0:5,5:0,0
17	20069120	.	C	G	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||100|SPECC1|protein_coding|CODING|ENST00000583482|4|1),INTRON(MODIFIER||||101|SPECC1|protein_coding|CODING|ENST00000581973|3|1),INTRON(MODIFIER||||1068|SPECC1|protein_coding|CODING|ENST00000261503|3|1),INTRON(MODIFIER||||1068|SPECC1|protein_coding|CODING|ENST00000395527|3|1),INTRON(MODIFIER||||131|SPECC1|protein_coding|CODING|ENST00000583463|4|1),INTRON(MODIFIER||||408|SPECC1|protein_coding|CODING|ENST00000536879|1|1),INTRON(MODIFIER||||703|SPECC1|protein_coding|CODING|ENST00000395522|1|1),INTRON(MODIFIER||||709|SPECC1|protein_coding|CODING|ENST00000395525|1|1),INTRON(MODIFIER||||790|SPECC1|protein_coding|CODING|ENST00000395529|3|1),INTRON(MODIFIER||||987|SPECC1|protein_coding|CODING|ENST00000395530|1|1),INTRON(MODIFIER|||||SPECC1|nonsense_mediated_decay|CODING|ENST00000467722|1|1),INTRON(MODIFIER|||||SPECC1|processed_transcript|CODING|ENST00000413167|3|1),INTRON(MODIFIER|||||SPECC1|processed_transcript|CODING|ENST00000472876|1|1),INTRON(MODIFIER|||||SPECC1|processed_transcript|CODING|ENST00000579688|1|1),INTRON(MODIFIER|||||SPECC1|processed_transcript|CODING|ENST00000582063|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:0:0:0:0,0:40,40:0,0:0,0	80:0:0:0:0,0:75,75:5,5:0,0
17	21537248	rs200665784	A	G	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=AA->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER|||||NCOR1P2|unprocessed_pseudogene|NON_CODING|ENST00000584728|1|1);RSPOS=21537248;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	66:4:0:0:62,70:0,0:0,2:0,0	123:3:0:0:113,127:0,0:7,7:0,0
17	21537287	rs75340176	G	C	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=GG->CG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER|||||NCOR1P2|unprocessed_pseudogene|NON_CODING|ENST00000584728|1|1);RSPOS=21537287;dbSNPBuildID=131;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	58:1:0:0:0,0:0,2:57,62:0,0	124:2:0:0:0,0:6,6:116,126:0,0
17	21547482	.	A	T	.	PASS	NT=ref;QSS=35;QSS_NT=35;SGT=AA->AT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=DOWNSTREAM(MODIFIER|||||NCOR1P2|unprocessed_pseudogene|NON_CODING|ENST00000584728||1),INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||AC144838.2|processed_pseudogene|NON_CODING|ENST00000580930||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	74:1:0:0:73,81:0,0:0,0:0,1	155:2:0:0:143,164:0,0:0,0:10,19
17	21551560	.	G	C	.	PASS	NT=ref;QSS=38;QSS_NT=38;SGT=GG->CG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=DOWNSTREAM(MODIFIER|||||AC144838.2|processed_pseudogene|NON_CODING|ENST00000580930||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	85:4:0:0:0,0:0,1:81,96:0,0	188:9:0:0:0,0:8,11:171,206:0,0
17	21556244	rs76640547	C	T	.	PASS	NT=ref;QSS=27;QSS_NT=27;SGT=CC->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=DOWNSTREAM(MODIFIER|||||AC144838.3|unprocessed_pseudogene|NON_CODING|ENST00000584107||1),INTERGENIC(MODIFIER||||||||||1);RSPOS=21556244;dbSNPBuildID=131;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	67:1:0:0:0,1:66,73:0,0:0,2	144:2:0:0:0,0:131,148:0,0:11,16
17	21905767	.	G	A	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||RP11-1109M24.8|processed_pseudogene|NON_CODING|ENST00000578438||1),DOWNSTREAM(MODIFIER|||||RP11-1109M24.9|processed_pseudogene|NON_CODING|ENST00000582046||1),INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||RP11-1109M24.11|processed_pseudogene|NON_CODING|ENST00000583831||1),UPSTREAM(MODIFIER|||||RP11-744K17.9|lincRNA|NON_CODING|ENST00000581223||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:1:0:0:0,0:0,0:36,49:0,0	91:4:0:0:6,8:0,0:81,106:0,0
17	22046481	.	C	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	23:0:0:0:0,0:23,28:0,0:0,0	65:0:0:0:10,10:54,66:0,0:1,1
17	22208887	rs77212671	C	T	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||RP11-846F4.11|processed_pseudogene|NON_CODING|ENST00000578745||1),INTERGENIC(MODIFIER||||||||||1);RSPOS=22208887;dbSNPBuildID=131;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	43:2:0:0:0,0:41,43:0,0:0,0	75:1:0:0:0,0:67,67:0,1:7,8
17	22262186	.	C	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	85:5:0:0:0,1:77,107:1,2:2,2	178:12:0:0:0,2:151,217:13,14:2,3
17	25284545	.	A	T	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	93:10:0:0:83,108:0,0:0,0:0,0	205:15:0:0:180,237:0,0:0,0:10,16
17	25284551	.	C	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	83:3:0:0:2,2:78,95:0,0:0,0	197:8:0:0:0,0:181,225:0,0:8,13
17	25305720	.	T	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||RP11-260A9.1|processed_pseudogene|NON_CODING|ENST00000580677||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	98:2:0:0:1,2:0,0:0,0:95,125	237:4:0:0:9,16:0,1:0,1:224,319
17	25308441	rs200409887	G	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||RP11-260A9.1|processed_pseudogene|NON_CODING|ENST00000580677||1);RSPOS=25308441;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:0:0:0:0,0:1,1:33,33:0,0	99:3:0:0:7,9:0,0:89,92:0,0
17	25308442	rs201136925	G	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||RP11-260A9.1|processed_pseudogene|NON_CODING|ENST00000580677||1);RSPOS=25308442;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:0:0:0:0,0:0,0:34,34:0,0	99:3:0:0:8,10:0,0:88,91:0,0
17	25308557	rs200368761	A	C	.	PASS	NT=ref;QSS=24;QSS_NT=24;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||RP11-260A9.1|processed_pseudogene|NON_CODING|ENST00000580677||1);RSPOS=25308557;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	53:2:0:0:51,55:0,0:0,0:0,0	96:2:0:0:88,98:6,7:0,0:0,0
17	26178337	.	G	A	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||159|RP1-66C13.4|protein_coding|CODING|ENST00000582441|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:0:0:0:0,0:0,0:33,33:0,0	75:1:0:0:7,7:0,0:66,67:1,1
17	26844244	.	T	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->AT;SOMATIC;TQSS=2;TQSS_NT=1;EFF=INTRON(MODIFIER||||116|FOXN1|protein_coding|CODING|ENST00000577936|1|1),INTRON(MODIFIER||||648|FOXN1|protein_coding|CODING|ENST00000579795|1|1),INTRON(MODIFIER|||||RP11-192H23.4|nonsense_mediated_decay|CODING|ENST00000481916|7|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	18:1:0:0:0,0:1,1:0,1:16,17	45:2:0:0:9,9:2,4:1,1:31,33
17	27081010	.	T	C	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||195|TRAF4|protein_coding|CODING|ENST00000262396||1),DOWNSTREAM(MODIFIER||||28|FAM222B|protein_coding|CODING|ENST00000582266||1),DOWNSTREAM(MODIFIER||||437|TRAF4|protein_coding|CODING|ENST00000444415||1),DOWNSTREAM(MODIFIER||||470|TRAF4|protein_coding|CODING|ENST00000262395||1),DOWNSTREAM(MODIFIER||||562|FAM222B|protein_coding|CODING|ENST00000341217||1),DOWNSTREAM(MODIFIER||||562|FAM222B|protein_coding|CODING|ENST00000452648||1),DOWNSTREAM(MODIFIER||||562|FAM222B|protein_coding|CODING|ENST00000581407||1),DOWNSTREAM(MODIFIER|||||TRAF4|nonsense_mediated_decay|CODING|ENST00000454852||1),DOWNSTREAM(MODIFIER|||||TRAF4|retained_intron|CODING|ENST00000469529||1),INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||AC010761.10|antisense|NON_CODING|ENST00000579468||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:3:0:0:0,0:0,0:0,0:34,38	65:4:0:0:0,0:5,5:0,0:56,61
17	27081026	.	T	A	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||195|TRAF4|protein_coding|CODING|ENST00000262396||1),DOWNSTREAM(MODIFIER||||28|FAM222B|protein_coding|CODING|ENST00000582266||1),DOWNSTREAM(MODIFIER||||437|TRAF4|protein_coding|CODING|ENST00000444415||1),DOWNSTREAM(MODIFIER||||470|TRAF4|protein_coding|CODING|ENST00000262395||1),DOWNSTREAM(MODIFIER||||562|FAM222B|protein_coding|CODING|ENST00000341217||1),DOWNSTREAM(MODIFIER||||562|FAM222B|protein_coding|CODING|ENST00000452648||1),DOWNSTREAM(MODIFIER||||562|FAM222B|protein_coding|CODING|ENST00000581407||1),DOWNSTREAM(MODIFIER|||||TRAF4|nonsense_mediated_decay|CODING|ENST00000454852||1),DOWNSTREAM(MODIFIER|||||TRAF4|retained_intron|CODING|ENST00000469529||1),INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||AC010761.10|antisense|NON_CODING|ENST00000579468||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:2:0:0:0,0:0,0:0,0:36,38	75:2:0:0:7,7:0,1:0,0:66,67
17	27115122	.	G	A	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||135|FAM222B|protein_coding|CODING|ENST00000577513|1|1),INTRON(MODIFIER||||135|FAM222B|protein_coding|CODING|ENST00000581229|2|1),INTRON(MODIFIER||||178|FAM222B|protein_coding|CODING|ENST00000577376|2|1),INTRON(MODIFIER||||238|FAM222B|protein_coding|CODING|ENST00000583307|3|1),INTRON(MODIFIER||||28|FAM222B|protein_coding|CODING|ENST00000577682|2|1),INTRON(MODIFIER||||28|FAM222B|protein_coding|CODING|ENST00000581381|2|1),INTRON(MODIFIER||||28|FAM222B|protein_coding|CODING|ENST00000582059|1|1),INTRON(MODIFIER||||28|FAM222B|protein_coding|CODING|ENST00000582266|1|1),INTRON(MODIFIER||||28|FAM222B|protein_coding|CODING|ENST00000583522|3|1),INTRON(MODIFIER||||28|FAM222B|protein_coding|CODING|ENST00000583953|2|1),INTRON(MODIFIER||||562|FAM222B|protein_coding|CODING|ENST00000341217|1|1),INTRON(MODIFIER||||562|FAM222B|protein_coding|CODING|ENST00000452648|1|1),INTRON(MODIFIER||||562|FAM222B|protein_coding|CODING|ENST00000581407|1|1),INTRON(MODIFIER|||||FAM222B|nonsense_mediated_decay|CODING|ENST00000579381|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:0:0:0:0,0:0,0:34,35:0,0	78:2:0:0:5,5:0,0:71,74:0,0
17	28063621	.	T	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||119|SSH2|protein_coding|CODING|ENST00000592397|2|1),INTRON(MODIFIER||||1423|SSH2|protein_coding|CODING|ENST00000269033|2|1),INTRON(MODIFIER||||1450|SSH2|protein_coding|CODING|ENST00000540801|3|1),INTRON(MODIFIER||||202|SSH2|protein_coding|CODING|ENST00000324677|1|1),INTRON(MODIFIER|||||SSH2|nonsense_mediated_decay|CODING|ENST00000579040|2|1),INTRON(MODIFIER|||||SSH2|processed_transcript|CODING|ENST00000580327|1|1),INTRON(MODIFIER|||||SSH2|retained_intron|CODING|ENST00000394848|2|1),INTRON(MODIFIER|||||SSH2|retained_intron|CODING|ENST00000577483|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:0:0:0:0,0:0,0:0,0:34,35	76:2:0:0:0,0:4,4:0,2:70,71
17	28140920	.	A	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||119|SSH2|protein_coding|CODING|ENST00000592397|1|1),INTRON(MODIFIER||||1423|SSH2|protein_coding|CODING|ENST00000269033|1|1),INTRON(MODIFIER||||1450|SSH2|protein_coding|CODING|ENST00000540801|2|1),INTRON(MODIFIER|||||SSH2|nonsense_mediated_decay|CODING|ENST00000579040|1|1),INTRON(MODIFIER|||||SSH2|retained_intron|CODING|ENST00000394848|1|1),INTRON(MODIFIER|||||SSH2|retained_intron|CODING|ENST00000577483|1|1),INTRON(MODIFIER|||||SSH2|retained_intron|CODING|ENST00000578411|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:3:0:0:31,35:0,0:1,2:0,0	49:1:1:0:41,44:1,2:0,0:6,6
17	28602145	.	T	G	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||230|BLMH|protein_coding|CODING|ENST00000577623|4|1),INTRON(MODIFIER||||261|BLMH|protein_coding|CODING|ENST00000581037|3|1),INTRON(MODIFIER||||317|BLMH|protein_coding|CODING|ENST00000584603|6|1),INTRON(MODIFIER||||368|BLMH|protein_coding|CODING|ENST00000394819|5|1),INTRON(MODIFIER||||455|BLMH|protein_coding|CODING|ENST00000261714|6|1),INTRON(MODIFIER|||||BLMH|nonsense_mediated_decay|CODING|ENST00000578090|5|1),INTRON(MODIFIER|||||BLMH|processed_transcript|CODING|ENST00000582669|1|1),INTRON(MODIFIER|||||BLMH|retained_intron|CODING|ENST00000579325|1|1),UPSTREAM(MODIFIER|||||BLMH|retained_intron|CODING|ENST00000577306||1),UPSTREAM(MODIFIER|||||BLMH|retained_intron|CODING|ENST00000579957||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:1:0:0:0,0:0,0:0,0:30,31	77:1:0:0:0,0:1,1:13,14:62,62
17	29369448	rs73269746	C	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-271K11.5|processed_transcript|NON_CODING|ENST00000581652|2|1),INTRON(MODIFIER|||||RP11-271K11.5|processed_transcript|NON_CODING|ENST00000583112|2|1),INTRON(MODIFIER|||||RP11-271K11.5|transcribed_unprocessed_pseudogene|NON_CODING|ENST00000579164|3|1),INTRON(MODIFIER|||||RP11-848P1.9|processed_transcript|NON_CODING|ENST00000580190|3|1),UPSTREAM(MODIFIER|||||RP11-848P1.9|processed_transcript|NON_CODING|ENST00000580053||1);RSPOS=29369448;GMAF=0.1831;dbSNPBuildID=131;SSR=0;SAO=0;VP=050000000005000016000100;WGT=1;VC=SNV;ASP;KGPhase1;KGPROD;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:0:0:0:0,0:32,32:0,0:0,0	72:1:0:0:0,0:65,67:0,0:6,9
17	30357714	rs201577424	A	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||LRRC37B|processed_transcript|CODING|ENST00000581786||1),EXON(MODIFIER|||||LRRC37B|nonsense_mediated_decay|CODING|ENST00000578674|4|1),EXON(MODIFIER|||||LRRC37B|processed_transcript|CODING|ENST00000580871|3|1),EXON(MODIFIER|||||LRRC37B|retained_intron|CODING|ENST00000583204|4|1),EXON(MODIFIER|||||LRRC37B|retained_intron|CODING|ENST00000583758|2|1),INTRON(MODIFIER||||896|LRRC37B|protein_coding|CODING|ENST00000394713|3|1),INTRON(MODIFIER||||908|LRRC37B|protein_coding|CODING|ENST00000584368|3|1),INTRON(MODIFIER|||||LRRC37B|retained_intron|CODING|ENST00000582815|1|1),NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|caA/caT|Q539H|865|LRRC37B|protein_coding|CODING|ENST00000543378|7|1),NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|caA/caT|Q621H|947|LRRC37B|protein_coding|CODING|ENST00000341671|4|1),NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|caA/caT|Q648H|974|LRRC37B|protein_coding|CODING|ENST00000327564|4|1),UPSTREAM(MODIFIER|||||LRRC37B|retained_intron|CODING|ENST00000580303||1);RSPOS=30357714;dbSNPBuildID=137;SSR=0;SAO=0;VP=050200000a05000002000100;WGT=1;VC=SNV;S3D;NSM;REF;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	21:0:0:0:21,25:0,0:0,0:0,0	64:0:0:0:54,55:0,0:0,0:10,12
17	30964060	.	C	A	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||MYO1D|processed_transcript|CODING|ENST00000581059||1),INTRON(MODIFIER||||1006|MYO1D|protein_coding|CODING|ENST00000318217|20|1),INTRON(MODIFIER||||918|MYO1D|protein_coding|CODING|ENST00000394649|22|1),INTRON(MODIFIER||||961|MYO1D|protein_coding|CODING|ENST00000579584|20|1),INTRON(MODIFIER|||||MYO1D|retained_intron|CODING|ENST00000577352|4|1),INTRON(MODIFIER|||||RP11-220C2.1|antisense|NON_CODING|ENST00000582272|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:0:0:0:0,0:33,33:0,0:0,0	80:0:0:0:8,8:72,72:0,0:0,0
17	32543419	.	C	T	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:0:0:0:0,0:38,38:0,0:0,0	79:0:0:0:0,0:70,70:0,0:9,9
17	32775054	.	G	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	27:0:0:0:0,0:0,0:27,29:0,0	79:1:0:0:0,0:0,0:69,70:9,9
17	32821846	.	A	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:0:0:0:30,30:0,0:0,0:0,0	60:0:0:0:55,55:0,0:5,5:0,0
17	34106888	rs186303708	C	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||130|MMP28|protein_coding|CODING|ENST00000250144|1|1),INTRON(MODIFIER|||||MMP28|nonsense_mediated_decay|CODING|ENST00000587639|1|1),INTRON(MODIFIER|||||MMP28|nonsense_mediated_decay|CODING|ENST00000589061|1|1),INTRON(MODIFIER|||||MMP28|nonsense_mediated_decay|CODING|ENST00000589103|1|1),INTRON(MODIFIER|||||MMP28|nonsense_mediated_decay|CODING|ENST00000590643|1|1),UPSTREAM(MODIFIER||||108|MMP28|protein_coding|CODING|ENST00000593125||1);RSPOS=34106888;GMAF=0.0005;dbSNPBuildID=135;SSR=0;SAO=0;VP=050000080005000014000100;GENEINFO=MMP28:79148;WGT=1;VC=SNV;INT;ASP;KGPhase1;KGPROD	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:1:0:0:0,0:29,31:0,0:0,0	75:3:0:0:1,2:66,69:0,0:5,6
17	34326939	.	G	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||109|CCL14|protein_coding|CODING|ENST00000536149|1|1),INTRON(MODIFIER||||113|CCL15|protein_coding|CODING|ENST00000354059|1|1),INTRON(MODIFIER|||||CCL15|nonsense_mediated_decay|NON_CODING|ENST00000481427|1|1),INTRON(MODIFIER|||||CCL15|nonsense_mediated_decay|NON_CODING|ENST00000495214|1|1),UPSTREAM(MODIFIER|||||RP11-104J23.1|antisense|NON_CODING|ENST00000590192||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:0:0:0:0,0:0,0:32,33:0,0	71:0:0:0:5,5:1,1:65,65:0,0
17	34327252	.	A	G	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||109|CCL14|protein_coding|CODING|ENST00000536149|1|1),INTRON(MODIFIER||||113|CCL15|protein_coding|CODING|ENST00000354059|1|1),INTRON(MODIFIER|||||CCL15|nonsense_mediated_decay|NON_CODING|ENST00000481427|1|1),INTRON(MODIFIER|||||CCL15|nonsense_mediated_decay|NON_CODING|ENST00000495214|1|1),UPSTREAM(MODIFIER|||||RP11-104J23.1|antisense|NON_CODING|ENST00000590192||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:0:0:0:36,37:0,0:0,0:0,0	70:3:0:0:61,67:0,1:6,6:0,0
17	37643114	.	A	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1200|CDK12|protein_coding|CODING|ENST00000584632|2|1),INTRON(MODIFIER||||1481|CDK12|protein_coding|CODING|ENST00000430627|2|1),INTRON(MODIFIER||||1490|CDK12|protein_coding|CODING|ENST00000447079|2|1),INTRON(MODIFIER|||||CDK12|processed_transcript|CODING|ENST00000581593|1|1),UPSTREAM(MODIFIER|||||U6|snRNA|NON_CODING|ENST00000411159||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	28:1:0:0:27,28:0,0:0,0:0,0	67:0:0:0:63,63:0,0:4,4:0,0
17	37870011	.	G	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=DOWNSTREAM(MODIFIER||||138|ERBB2|protein_coding|CODING|ENST00000584099||1),DOWNSTREAM(MODIFIER|||||ERBB2|retained_intron|CODING|ENST00000583391||1),DOWNSTREAM(MODIFIER|||||ERBB2|retained_intron|CODING|ENST00000584908||1),INTRON(MODIFIER||||1055|ERBB2|protein_coding|CODING|ENST00000584450|9|1),INTRON(MODIFIER||||1225|ERBB2|protein_coding|CODING|ENST00000406381|11|1),INTRON(MODIFIER||||1225|ERBB2|protein_coding|CODING|ENST00000540147|9|1),INTRON(MODIFIER||||1225|ERBB2|protein_coding|CODING|ENST00000584601|13|1),INTRON(MODIFIER||||1240|ERBB2|protein_coding|CODING|ENST00000541774|9|1),INTRON(MODIFIER||||1255|ERBB2|protein_coding|CODING|ENST00000269571|9|1),INTRON(MODIFIER||||603|ERBB2|protein_coding|CODING|ENST00000540042|9|1),INTRON(MODIFIER||||603|ERBB2|protein_coding|CODING|ENST00000578199|12|1),INTRON(MODIFIER||||979|ERBB2|protein_coding|CODING|ENST00000445658|3|1),INTRON(MODIFIER|||||ERBB2|nonsense_mediated_decay|CODING|ENST00000578373|9|1),INTRON(MODIFIER|||||ERBB2|nonsense_mediated_decay|CODING|ENST00000582648|4|1),INTRON(MODIFIER|||||ERBB2|retained_intron|CODING|ENST00000582788|4|1),INTRON(MODIFIER|||||ERBB2|retained_intron|CODING|ENST00000583038|7|1),UPSTREAM(MODIFIER|||||ERBB2|retained_intron|CODING|ENST00000578630||1),UPSTREAM(MODIFIER|||||ERBB2|retained_intron|CODING|ENST00000584684||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	27:0:0:0:0,0:0,0:26,26:1,1	53:3:0:0:10,10:0,0:40,43:0,0
17	38062980	.	C	A	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||GSDMB|retained_intron|CODING|ENST00000464556||1),EXON(MODIFIER|||||GSDMB|retained_intron|CODING|ENST00000477054|6|1),EXON(MODIFIER|||||GSDMB|retained_intron|CODING|ENST00000479136|1|1),INTRON(MODIFIER||||394|GSDMB|protein_coding|CODING|ENST00000394175|4|1),INTRON(MODIFIER||||403|GSDMB|protein_coding|CODING|ENST00000309481|6|1),INTRON(MODIFIER||||407|GSDMB|protein_coding|CODING|ENST00000520542|6|1),INTRON(MODIFIER||||411|GSDMB|protein_coding|CODING|ENST00000394179|6|1),INTRON(MODIFIER||||416|GSDMB|protein_coding|CODING|ENST00000360317|6|1),INTRON(MODIFIER||||416|GSDMB|protein_coding|CODING|ENST00000418519|7|1),INTRON(MODIFIER|||||GSDMB|nonsense_mediated_decay|CODING|ENST00000522564|3|1),INTRON(MODIFIER|||||GSDMB|nonsense_mediated_decay|CODING|ENST00000523371|4|1),INTRON(MODIFIER|||||GSDMB|nonsense_mediated_decay|CODING|ENST00000524039|3|1),INTRON(MODIFIER|||||GSDMB|retained_intron|CODING|ENST00000519429|1|1),UPSTREAM(MODIFIER|||||GSDMB|retained_intron|CODING|ENST00000486560||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:0:0:0:0,0:37,38:0,0:0,0	81:1:0:0:8,8:72,73:0,0:0,0
17	39221317	.	C	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||128|KRTAP2-4|protein_coding|CODING|ENST00000394015||1),INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER||||128|KRTAP2-3|protein_coding|CODING|ENST00000391418||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:0:0:0:0,0:33,33:0,0:0,0	64:1:0:0:0,0:59,61:0,0:4,4
17	39258166	.	A	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|tTc/tGc|F99C|235|KRTAP4-16P|protein_coding|CODING|ENST00000440582|1|1),UPSTREAM(MODIFIER||||185|KRTAP4-8|protein_coding|CODING|ENST00000333822||1),UPSTREAM(MODIFIER||||210|KRTAP4-9|protein_coding|CODING|ENST00000391415||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:0:0:0:32,34:0,0:0,0:0,0	48:0:0:0:44,47:4,4:0,0:0,0
17	39324333	rs12953139	T	A	.	PASS	NT=ref;QSS=26;QSS_NT=26;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|cAg/cTg|Q31L|195|KRTAP4-3|protein_coding|CODING|ENST00000391356|1|1);RSPOS=39324333;dbSNPBuildID=121;SSR=0;SAO=0;VP=050000000a05040002000100;GENEINFO=KRTAP4-3:85290;WGT=1;VC=SNV;NSM;REF;ASP;VLD;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:0:0:0:0,0:1,1:2,2:35,35	95:3:0:0:15,19:0,0:3,4:74,75
17	39790050	.	T	C	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||591|JUP|protein_coding|CODING|ENST00000540235|4|1),INTRON(MODIFIER|||||KRT42P|processed_transcript|NON_CODING|ENST00000398469|4|1),INTRON(MODIFIER|||||KRT42P|processed_transcript|NON_CODING|ENST00000438131|3|1),INTRON(MODIFIER|||||KRT42P|processed_transcript|NON_CODING|ENST00000587390|2|1),INTRON(MODIFIER|||||KRT42P|processed_transcript|NON_CODING|ENST00000589633|2|1),UPSTREAM(MODIFIER|||||KRT42P|transcribed_unprocessed_pseudogene|NON_CODING|ENST00000458343||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	52:6:0:0:0,0:0,0:0,1:46,55	115:4:0:0:0,0:6,9:2,2:103,120
17	41175248	.	G	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||145|VAT1|protein_coding|CODING|ENST00000587062|1|1),INTRON(MODIFIER||||153|VAT1|protein_coding|CODING|ENST00000590924|1|1),UPSTREAM(MODIFIER||||150|VAT1|protein_coding|CODING|ENST00000589709||1),UPSTREAM(MODIFIER||||227|RND2|protein_coding|CODING|ENST00000587250||1),UPSTREAM(MODIFIER||||228|RND2|protein_coding|CODING|ENST00000544533||1),UPSTREAM(MODIFIER||||259|VAT1|protein_coding|CODING|ENST00000420567||1),UPSTREAM(MODIFIER||||325|VAT1|protein_coding|CODING|ENST00000587173||1),UPSTREAM(MODIFIER||||393|VAT1|protein_coding|CODING|ENST00000355653||1),UPSTREAM(MODIFIER||||91|VAT1|protein_coding|CODING|ENST00000589828||1),UPSTREAM(MODIFIER|||||RND2|retained_intron|CODING|ENST00000587117||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:3:0:0:0,0:0,1:32,34:0,1	63:2:0:0:4,5:0,0:57,59:0,0
17	41309215	.	G	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||NBR2|processed_transcript|NON_CODING|ENST00000467245||1),INTRON(MODIFIER||||712|BRCA1|protein_coding|CODING|ENST00000393691|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:0:0:0:0,0:0,0:29,29:0,0	62:0:0:0:0,0:4,4:58,58:0,0
17	41506438	.	C	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	28:0:0:0:0,0:28,28:0,0:0,0	69:1:0:0:6,8:62,63:0,0:0,0
17	41746133	.	T	C	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:0:0:0:0,0:0,0:0,0:35,35	66:3:0:0:0,0:4,4:2,2:57,60
17	42403337	.	G	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER||||142|SLC25A39|protein_coding|CODING|ENST00000585636||1),UPSTREAM(MODIFIER||||163|SLC25A39|protein_coding|CODING|ENST00000588049||1),UPSTREAM(MODIFIER||||227|SLC25A39|protein_coding|CODING|ENST00000586016||1),UPSTREAM(MODIFIER||||266|SLC25A39|protein_coding|CODING|ENST00000588767||1),UPSTREAM(MODIFIER||||336|SLC25A39|protein_coding|CODING|ENST00000537904||1),UPSTREAM(MODIFIER||||351|SLC25A39|protein_coding|CODING|ENST00000225308||1),UPSTREAM(MODIFIER||||351|SLC25A39|protein_coding|CODING|ENST00000590194||1),UPSTREAM(MODIFIER||||359|SLC25A39|protein_coding|CODING|ENST00000377095||1),UPSTREAM(MODIFIER||||71|SLC25A39|protein_coding|CODING|ENST00000585523||1),UPSTREAM(MODIFIER||||92|SLC25A39|protein_coding|CODING|ENST00000592857||1),UPSTREAM(MODIFIER||||98|SLC25A39|protein_coding|CODING|ENST00000586633||1),UPSTREAM(MODIFIER|||||RP5-1067M6.3|lincRNA|NON_CODING|ENST00000588260||1),UPSTREAM(MODIFIER|||||SLC25A39|nonsense_mediated_decay|CODING|ENST00000593166||1),UPSTREAM(MODIFIER|||||SLC25A39|retained_intron|CODING|ENST00000585695||1),UPSTREAM(MODIFIER|||||SLC25A39|retained_intron|CODING|ENST00000588315||1),UPSTREAM(MODIFIER|||||SLC25A39|retained_intron|CODING|ENST00000591006||1),UPSTREAM(MODIFIER|||||SLC25A39|retained_intron|CODING|ENST00000591151||1),UPSTREAM(MODIFIER|||||SLC25A39|retained_intron|CODING|ENST00000592372||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:0:0:0:0,0:0,0:30,32:0,0	83:1:0:0:5,5:0,0:77,78:0,0
17	43202726	.	G	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||126|PLCD3|protein_coding|CODING|ENST00000538093|1|1),INTRON(MODIFIER||||194|PLCD3|protein_coding|CODING|ENST00000590644|1|1),INTRON(MODIFIER||||788|PLCD3|protein_coding|CODING|ENST00000322765|1|1),INTRON(MODIFIER|||||PLCD3|processed_transcript|CODING|ENST00000540511|1|1),INTRON(MODIFIER|||||PLCD3|processed_transcript|CODING|ENST00000544446|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:3:0:0:0,0:0,0:28,31:0,0	75:2:0:0:5,6:0,1:68,69:0,0
17	44174235	rs62061801	A	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1041|KANSL1|protein_coding|CODING|ENST00000575318|1|1),INTRON(MODIFIER||||1105|KANSL1|protein_coding|CODING|ENST00000262419|2|1),INTRON(MODIFIER||||1105|KANSL1|protein_coding|CODING|ENST00000432791|1|1),INTRON(MODIFIER||||1105|KANSL1|protein_coding|CODING|ENST00000572904|2|1),INTRON(MODIFIER||||1105|KANSL1|protein_coding|CODING|ENST00000574590|2|1),INTRON(MODIFIER||||399|KANSL1|protein_coding|CODING|ENST00000393476|2|1),INTRON(MODIFIER|||||KANSL1|retained_intron|CODING|ENST00000577114|1|1);RSPOS=44174235;GMAF=0.1007;dbSNPBuildID=129;SSR=0;SAO=0;VP=050000080001040116000104;GENEINFO=KANSL1:284058;WGT=1;VC=SNV;INT;VLD;GNO;KGPhase1;KGPROD;OTHERKG;NOV	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	55:0:0:0:54,54:0,0:1,1:0,0	94:4:0:0:83,85:1,2:5,6:1,1
17	47216193	.	T	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||480|B4GALNT2|protein_coding|CODING|ENST00000504681|1|1),INTRON(MODIFIER||||506|B4GALNT2|protein_coding|CODING|ENST00000393354|1|1),INTRON(MODIFIER||||566|B4GALNT2|protein_coding|CODING|ENST00000300404|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:1:0:0:0,0:0,0:0,0:31,32	65:2:0:0:0,0:5,5:0,0:58,60
17	47317887	rs59664919	A	T	.	PASS	NT=ref;QSS=37;QSS_NT=37;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=47317887;dbSNPBuildID=129;SSR=0;SAO=0;VP=050000000011000002000100;WGT=1;VC=SNV;OTH;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	25:0:2:0:25,28:0,0:0,0:0,0	47:0:6:0:31,31:0,0:0,0:16,16
17	47540032	.	C	A	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||78|RP11-81K2.1|protein_coding|CODING|ENST00000576461|2|1),UPSTREAM(MODIFIER|||||RP11-1079K10.5|lincRNA|NON_CODING|ENST00000509950||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:1:0:0:0,0:35,36:0,0:0,0	53:0:0:0:5,5:48,48:0,0:0,0
17	48053234	.	G	A	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||168|DLX4|protein_coding|CODING|ENST00000411890||1),DOWNSTREAM(MODIFIER||||240|DLX4|protein_coding|CODING|ENST00000240306||1),DOWNSTREAM(MODIFIER|||||DLX4|processed_transcript|CODING|ENST00000503410||1),DOWNSTREAM(MODIFIER|||||DLX4|processed_transcript|CODING|ENST00000505318||1),DOWNSTREAM(MODIFIER|||||DLX4|retained_intron|CODING|ENST00000503276||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	43:2:0:0:0,0:0,0:41,43:0,0	70:1:0:0:5,5:1,1:63,64:0,0
17	48732184	rs111439061	T	C	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1527|ABCC3|protein_coding|CODING|ENST00000285238|1|1),INTRON(MODIFIER||||572|ABCC3|protein_coding|CODING|ENST00000427699|1|1),INTRON(MODIFIER|||||ABCC3|nonsense_mediated_decay|CODING|ENST00000502426|1|1),INTRON(MODIFIER|||||ABCC3|nonsense_mediated_decay|CODING|ENST00000505699|1|1),INTRON(MODIFIER|||||ABCC3|nonsense_mediated_decay|CODING|ENST00000513511|2|1);RSPOS=48732184;dbSNPBuildID=132;SSR=0;SAO=0;VP=050000080001000102000100;GENEINFO=ABCC3:8714;WGT=1;VC=SNV;INT;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:0:0:0:0,0:0,0:0,0:38,40	71:4:0:0:0,0:5,6:0,2:62,63
17	51739833	.	T	G	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:0:0:0:0,0:0,0:0,0:39,40	97:0:0:0:0,0:0,0:7,7:90,90
17	51790618	.	G	A	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:0:0:0:0,0:0,0:34,34:0,0	56:0:0:0:4,4:0,0:52,52:0,0
17	52930817	.	C	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:3:2:0:0,0:30,33:0,0:0,0	72:4:4:0:0,1:63,65:0,0:5,6
17	53706016	.	C	G	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:0:0:0:0,0:33,33:0,0:0,0	83:0:0:0:0,0:78,79:5,5:0,0
17	53861180	.	G	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||146|PCTP|protein_coding|CODING|ENST00000572536|2|1),INTRON(MODIFIER||||219|PCTP|protein_coding|CODING|ENST00000573500|5|1),INTRON(MODIFIER|||||PCTP|processed_transcript|CODING|ENST00000576221|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:1:0:0:0,0:0,0:30,33:0,0	67:0:0:0:6,7:0,0:61,61:0,0
17	54006748	.	A	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:0:0:0:35,36:0,0:0,0:0,0	74:3:0:0:64,67:0,0:0,0:7,7
17	54221542	rs147045204	A	C	.	PASS	NT=ref;QSS=26;QSS_NT=26;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||ANKFN1|retained_intron|CODING|ENST00000575594|1|1);RSPOS=54221542;dbSNPBuildID=134;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	25:2:0:0:23,25:0,0:0,0:0,0	52:8:0:0:33,34:11,18:0,0:0,0
17	54810823	.	A	G	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:2:0:0:33,35:0,0:0,0:0,1	68:4:0:0:52,54:3,5:9,11:0,0
17	55034589	.	T	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||RP5-1107A17.2|processed_pseudogene|NON_CODING|ENST00000570407||1),INTRON(MODIFIER||||36|COIL|protein_coding|CODING|ENST00000573008|1|1),INTRON(MODIFIER||||576|COIL|protein_coding|CODING|ENST00000240316|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	28:1:0:0:0,0:0,0:0,0:27,28	72:1:0:0:0,0:9,9:1,1:61,63
17	56194858	.	G	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:1:0:0:0,0:0,0:29,30:0,0	60:2:0:0:4,4:0,0:54,64:0,0
17	57092416	.	C	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||117|TRIM37|protein_coding|CODING|ENST00000585287|1|1),INTRON(MODIFIER||||803|TRIM37|protein_coding|CODING|ENST00000376149|21|1),INTRON(MODIFIER||||930|TRIM37|protein_coding|CODING|ENST00000393065|20|1),INTRON(MODIFIER||||964|TRIM37|protein_coding|CODING|ENST00000262294|21|1),INTRON(MODIFIER||||964|TRIM37|protein_coding|CODING|ENST00000393066|21|1),INTRON(MODIFIER|||||TRIM37|nonsense_mediated_decay|CODING|ENST00000577554|22|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	25:1:0:0:0,0:24,25:0,0:0,0	61:8:0:0:2,4:44,47:0,1:7,9
17	57951204	.	T	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||TUBD1|processed_transcript|CODING|ENST00000591611||1),DOWNSTREAM(MODIFIER|||||TUBD1|retained_intron|CODING|ENST00000587476||1),INTRON(MODIFIER||||199|TUBD1|protein_coding|CODING|ENST00000346141|2|1),INTRON(MODIFIER||||237|TUBD1|protein_coding|CODING|ENST00000539018|3|1),INTRON(MODIFIER||||351|TUBD1|protein_coding|CODING|ENST00000376094|4|1),INTRON(MODIFIER||||396|TUBD1|protein_coding|CODING|ENST00000394239|6|1),INTRON(MODIFIER||||398|TUBD1|protein_coding|CODING|ENST00000340993|5|1),INTRON(MODIFIER||||453|TUBD1|protein_coding|CODING|ENST00000325752|6|1),INTRON(MODIFIER||||453|TUBD1|protein_coding|CODING|ENST00000592426|5|1),INTRON(MODIFIER|||||TUBD1|nonsense_mediated_decay|CODING|ENST00000591548|6|1),INTRON(MODIFIER|||||TUBD1|nonsense_mediated_decay|CODING|ENST00000593110|2|1),INTRON(MODIFIER|||||TUBD1|retained_intron|CODING|ENST00000588009|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:1:0:0:0,0:0,0:0,0:30,31	64:3:0:0:0,0:7,8:0,0:54,56
17	58408849	.	C	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||132|USP32|protein_coding|CODING|ENST00000589335|2|1),INTRON(MODIFIER||||152|USP32|protein_coding|CODING|ENST00000588898|2|1),INTRON(MODIFIER||||1604|USP32|protein_coding|CODING|ENST00000300896|2|1),INTRON(MODIFIER||||390|USP32|protein_coding|CODING|ENST00000393003|2|1),INTRON(MODIFIER||||846|USP32|protein_coding|CODING|ENST00000590133|2|1),INTRON(MODIFIER|||||USP32|retained_intron|CODING|ENST00000589761|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:0:0:0:0,0:37,38:0,0:0,0	76:2:0:0:0,0:69,71:0,0:5,5
17	60546021	.	T	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||601|TLK2|protein_coding|CODING|ENST00000582809|1|1),UPSTREAM(MODIFIER||||39|TLK2|protein_coding|CODING|ENST00000583843||1),UPSTREAM(MODIFIER||||71|TLK2|protein_coding|CODING|ENST00000579450||1),UPSTREAM(MODIFIER|||||TLK2|processed_transcript|CODING|ENST00000577616||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:0:0:0:0,0:0,0:0,0:30,30	60:1:0:0:0,0:5,5:0,1:54,55
17	60546026	.	G	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||601|TLK2|protein_coding|CODING|ENST00000582809|1|1),UPSTREAM(MODIFIER||||39|TLK2|protein_coding|CODING|ENST00000583843||1),UPSTREAM(MODIFIER||||71|TLK2|protein_coding|CODING|ENST00000579450||1),UPSTREAM(MODIFIER|||||TLK2|processed_transcript|CODING|ENST00000577616||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:0:0:0:0,0:0,0:30,30:0,0	58:1:0:0:5,6:0,0:52,53:0,0
17	60987029	.	T	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	28:1:0:0:0,0:1,1:0,0:26,27	64:0:0:0:0,0:0,0:7,8:57,59
17	61633681	.	T	A	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||DCAF7|processed_transcript|CODING|ENST00000582274||1),INTRON(MODIFIER||||142|DCAF7|protein_coding|CODING|ENST00000415273|1|1),INTRON(MODIFIER||||165|DCAF7|protein_coding|CODING|ENST00000431926|1|1),INTRON(MODIFIER||||342|DCAF7|protein_coding|CODING|ENST00000310827|1|1),INTRON(MODIFIER|||||DCAF7|processed_transcript|CODING|ENST00000577702|1|1),INTRON(MODIFIER|||||DCAF7|processed_transcript|CODING|ENST00000582103|1|1),INTRON(MODIFIER|||||DCAF7|processed_transcript|CODING|ENST00000585252|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	41:0:0:0:0,0:0,0:0,0:41,41	75:0:0:0:4,4:0,0:0,0:71,71
17	62364121	.	C	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	42:2:0:0:0,0:40,42:0,0:0,0	83:1:0:0:7,7:75,76:0,0:0,0
17	62723064	.	A	C	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	41:0:0:0:40,40:0,0:0,0:1,1	67:0:0:0:57,57:9,9:0,0:1,1
17	63898927	.	G	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||519|CEP112|protein_coding|CODING|ENST00000541355|11|1),INTRON(MODIFIER||||913|CEP112|protein_coding|CODING|ENST00000537949|17|1),INTRON(MODIFIER||||955|CEP112|protein_coding|CODING|ENST00000392769|19|1),INTRON(MODIFIER||||955|CEP112|protein_coding|CODING|ENST00000535342|19|1),INTRON(MODIFIER|||||CEP112|processed_transcript|CODING|ENST00000584627|1|1),INTRON(MODIFIER|||||CEP112|processed_transcript|CODING|ENST00000584987|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:1:0:0:0,0:0,0:30,31:0,0	89:1:0:0:0,0:0,0:80,81:8,8
17	64241605	.	T	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||180|APOH|protein_coding|CODING|ENST00000577982|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:1:0:0:0,0:0,0:0,1:34,35	74:0:0:0:0,0:7,7:0,0:67,68
17	65505124	.	T	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||268|PITPNC1|protein_coding|CODING|ENST00000299954|1|1),INTRON(MODIFIER||||268|PITPNC1|protein_coding|CODING|ENST00000580974|1|1),INTRON(MODIFIER||||332|PITPNC1|protein_coding|CODING|ENST00000335257|1|1),INTRON(MODIFIER||||332|PITPNC1|protein_coding|CODING|ENST00000581322|1|1),INTRON(MODIFIER||||87|PITPNC1|protein_coding|CODING|ENST00000584471|1|1),INTRON(MODIFIER||||97|PITPNC1|protein_coding|CODING|ENST00000584554|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:0:0:0:0,0:0,0:1,1:30,30	75:0:0:0:0,0:10,10:1,1:64,64
17	66023914	.	C	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:2:0:0:0,0:32,33:0,1:0,0	73:2:0:0:5,5:65,68:1,1:0,0
17	66347103	.	A	G	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||361|ARSG|protein_coding|CODING|ENST00000452479|3|1),INTRON(MODIFIER||||525|ARSG|protein_coding|CODING|ENST00000448504|4|1),INTRON(MODIFIER|||||ARSG|processed_transcript|CODING|ENST00000581032|1|1),INTRON(MODIFIER|||||ARSG|processed_transcript|CODING|ENST00000582154|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:1:0:0:33,34:0,1:0,0:0,0	63:0:0:0:57,57:1,1:5,5:0,0
17	66433157	rs150153475	A	G	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||179|PRKAR1A|protein_coding|CODING|ENST00000590353|1|1),INTRON(MODIFIER||||364|WIPI1|protein_coding|CODING|ENST00000546360|3|1),INTRON(MODIFIER||||446|WIPI1|protein_coding|CODING|ENST00000262139|4|1),INTRON(MODIFIER|||||RP11-120M18.2|processed_transcript|NON_CODING|ENST00000586515|3|1),INTRON(MODIFIER|||||RP11-120M18.2|processed_transcript|NON_CODING|ENST00000591567|1|1),INTRON(MODIFIER|||||WIPI1|nonsense_mediated_decay|CODING|ENST00000589316|4|1),INTRON(MODIFIER|||||WIPI1|processed_transcript|CODING|ENST00000586815|4|1),INTRON(MODIFIER|||||WIPI1|processed_transcript|CODING|ENST00000589459|3|1),INTRON(MODIFIER|||||WIPI1|processed_transcript|CODING|ENST00000591494|2|1),UPSTREAM(MODIFIER||||205|WIPI1|protein_coding|CODING|ENST00000591744||1);RSPOS=66433157;dbSNPBuildID=134;SSR=0;SAO=0;VP=050000080005000002000100;GENEINFO=WIPI1:55062;WGT=1;VC=SNV;INT;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:2:0:0:28,30:0,0:0,0:1,1	63:0:0:0:51,51:0,0:11,11:1,1
17	67424616	rs140565680	C	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||334|MAP2K6|protein_coding|CODING|ENST00000590474|1|1),INTRON(MODIFIER|||||MAP2K6|nonsense_mediated_decay|CODING|ENST00000359094|1|1),INTRON(MODIFIER|||||MAP2K6|retained_intron|CODING|ENST00000586641|1|1);RSPOS=67424616;GMAF=0.0009;dbSNPBuildID=134;SSR=0;SAO=0;VP=050000080005000014000100;GENEINFO=MAP2K6:5608;WGT=1;VC=SNV;INT;ASP;KGPhase1;KGPROD	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	27:0:0:0:0,0:27,27:0,0:0,0	70:0:0:0:1,1:62,62:0,0:7,7
17	67610013	rs150115748	C	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||AC003051.1|lincRNA|NON_CODING|ENST00000433856|1|1),INTRON(MODIFIER|||||AC003051.1|lincRNA|NON_CODING|ENST00000588185|1|1),INTRON(MODIFIER|||||AC003051.1|lincRNA|NON_CODING|ENST00000588501|2|1),INTRON(MODIFIER|||||AC003051.1|lincRNA|NON_CODING|ENST00000591334|2|1);RSPOS=67610013;GMAF=0.0087;dbSNPBuildID=134;SSR=0;SAO=0;VP=050000000005000016000100;WGT=1;VC=SNV;ASP;KGPhase1;KGPROD;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	16:0:0:0:0,0:16,16:0,0:0,0	49:0:0:0:0,0:39,40:0,0:10,11
17	68026398	.	T	G	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||AC002539.1|antisense|NON_CODING|ENST00000435112|2|1),INTRON(MODIFIER|||||AC002539.1|antisense|NON_CODING|ENST00000587325|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	43:2:0:0:0,0:0,0:0,0:41,43	89:1:0:0:1,1:0,0:5,5:82,83
17	68291620	.	T	C	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:0:0:0:0,0:0,0:1,1:35,35	81:1:0:0:0,0:5,5:0,0:75,76
17	68358875	.	C	T	.	PASS	NT=ref;QSS=23;QSS_NT=23;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||CTD-2378E21.1|lincRNA|NON_CODING|ENST00000592809|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	44:0:0:0:0,0:44,45:0,0:0,0	82:0:0:0:0,0:74,75:0,0:8,8
17	69128382	.	G	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-879D6.1|lincRNA|NON_CODING|ENST00000569074|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:0:0:0:0,0:1,1:31,31:0,0	79:0:0:0:6,6:0,0:73,73:0,1
17	69187240	.	C	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-879D6.1|lincRNA|NON_CODING|ENST00000569074|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	28:0:0:0:0,0:28,28:0,0:0,0	90:1:0:0:5,5:84,85:0,0:0,0
17	69280289	rs113741688	T	C	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=69280289;dbSNPBuildID=132;SSR=0;SAO=0;VP=050100000005040102000100;WGT=1;VC=SNV;SLO;ASP;VLD;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:0:0:0:0,0:0,0:0,0:29,31	66:3:0:0:0,1:11,12:0,0:52,55
17	69474021	.	A	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:1:0:0:35,36:0,0:0,0:0,0	73:0:0:0:66,66:0,0:0,0:7,7
17	71575846	.	T	G	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||2153|SDK2|protein_coding|CODING|ENST00000388726|1|1),INTRON(MODIFIER||||2172|SDK2|protein_coding|CODING|ENST00000392650|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:1:0:0:0,0:0,0:0,0:34,36	71:0:0:0:0,0:1,1:4,4:66,74
17	73181397	.	A	G	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER||||52|SUMO2|protein_coding|CODING|ENST00000578238||1),UPSTREAM(MODIFIER||||71|SUMO2|protein_coding|CODING|ENST00000314523||1),UPSTREAM(MODIFIER||||95|SUMO2|protein_coding|CODING|ENST00000420826||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:0:0:0:36,37:1,1:0,0:0,0	79:0:0:0:72,72:0,0:7,8:0,0
17	73190064	.	A	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	27:5:0:0:22,29:0,0:0,0:0,0	42:2:0:0:34,38:0,0:6,6:0,0
17	73369661	.	T	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=EXON(MODIFIER|||||RP11-16C1.2|sense_intronic|NON_CODING|ENST00000578539|1|1),EXON(MODIFIER|||||RP11-16C1.3|antisense|NON_CODING|ENST00000585081|2|1),INTRON(MODIFIER||||109|GRB2|protein_coding|CODING|ENST00000582582|2|1),INTRON(MODIFIER||||156|GRB2|protein_coding|CODING|ENST00000578961|1|1),INTRON(MODIFIER||||176|GRB2|protein_coding|CODING|ENST00000316615|2|1),INTRON(MODIFIER||||176|GRB2|protein_coding|CODING|ENST00000392563|1|1),INTRON(MODIFIER||||217|GRB2|protein_coding|CODING|ENST00000316804|2|1),INTRON(MODIFIER||||217|GRB2|protein_coding|CODING|ENST00000392562|2|1),INTRON(MODIFIER||||217|GRB2|protein_coding|CODING|ENST00000392564|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	28:0:0:0:0,0:0,0:0,0:28,28	58:1:0:0:0,0:4,4:0,0:53,54
17	73964741	.	T	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||155|ACOX1|protein_coding|CODING|ENST00000588176|3|1),INTRON(MODIFIER||||592|ACOX1|protein_coding|CODING|ENST00000538781|3|1),INTRON(MODIFIER||||622|ACOX1|protein_coding|CODING|ENST00000537812|2|1),INTRON(MODIFIER||||660|ACOX1|protein_coding|CODING|ENST00000293217|2|1),INTRON(MODIFIER||||660|ACOX1|protein_coding|CODING|ENST00000301608|3|1),INTRON(MODIFIER||||660|ACOX1|protein_coding|CODING|ENST00000539791|2|1),INTRON(MODIFIER|||||ACOX1|nonsense_mediated_decay|CODING|ENST00000572047|2|1),INTRON(MODIFIER|||||ACOX1|nonsense_mediated_decay|CODING|ENST00000573078|3|1),INTRON(MODIFIER|||||ACOX1|nonsense_mediated_decay|CODING|ENST00000589301|2|1),INTRON(MODIFIER|||||ACOX1|processed_transcript|CODING|ENST00000591857|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	28:1:0:0:0,0:0,0:0,0:27,31	80:5:0:0:0,1:6,6:0,0:69,74
17	74112316	.	A	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||160|EXOC7|protein_coding|CODING|ENST00000589507|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:2:0:0:31,33:0,0:0,0:0,0	94:1:0:0:88,89:0,0:0,0:5,5
17	74379191	.	C	G	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=EXON(MODIFIER|||||SPHK1|retained_intron|CODING|ENST00000591762|1|1),INTRON(MODIFIER||||103|PRPSAP1|protein_coding|CODING|ENST00000442767|1|1),INTRON(MODIFIER||||151|SPHK1|protein_coding|CODING|ENST00000588682|1|1),INTRON(MODIFIER||||384|SPHK1|protein_coding|CODING|ENST00000545180|3|1),INTRON(MODIFIER||||4|SPHK1|protein_coding|CODING|ENST00000591651|2|1),INTRON(MODIFIER||||88|PRPSAP1|protein_coding|CODING|ENST00000423915|1|1),UPSTREAM(MODIFIER||||110|SPHK1|protein_coding|CODING|ENST00000590379||1),UPSTREAM(MODIFIER||||384|SPHK1|protein_coding|CODING|ENST00000392496||1),UPSTREAM(MODIFIER||||384|SPHK1|protein_coding|CODING|ENST00000592299||1),UPSTREAM(MODIFIER||||398|SPHK1|protein_coding|CODING|ENST00000590959||1),UPSTREAM(MODIFIER||||470|SPHK1|protein_coding|CODING|ENST00000323374||1),UPSTREAM(MODIFIER|||||SPHK1|retained_intron|CODING|ENST00000587167||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:0:0:0:0,0:33,33:0,0:0,0	69:2:0:0:0,0:61,63:6,6:0,0
17	74587037	.	C	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||RP11-666A8.11|processed_pseudogene|NON_CODING|ENST00000589690||1),INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER||||374|ST6GALNAC2|protein_coding|CODING|ENST00000225276||1),UPSTREAM(MODIFIER|||||ST6GALNAC2|nonsense_mediated_decay|CODING|ENST00000585736||1),UPSTREAM(MODIFIER|||||ST6GALNAC2|processed_transcript|CODING|ENST00000588005||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:2:0:0:0,0:33,36:0,0:0,0	77:1:0:0:0,0:69,70:0,0:7,8
17	75544073	.	C	G	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=EXON(MODIFIER|||||RP11-13K12.1|lincRNA|NON_CODING|ENST00000592651|2|1),INTRON(MODIFIER|||||RP11-13K12.1|lincRNA|NON_CODING|ENST00000590398|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:1:0:0:0,0:37,39:0,0:0,0	82:3:0:0:0,0:73,75:6,7:0,0
17	76005914	.	G	T	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1690|TNRC6C|protein_coding|CODING|ENST00000301624|1|1),INTRON(MODIFIER||||1690|TNRC6C|protein_coding|CODING|ENST00000588061|2|1),INTRON(MODIFIER||||1726|TNRC6C|protein_coding|CODING|ENST00000335749|1|1),INTRON(MODIFIER||||1726|TNRC6C|protein_coding|CODING|ENST00000588847|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:0:0:0:0,0:0,0:36,36:0,0	64:0:0:0:0,0:0,0:59,59:5,5
17	76148447	rs186312103	A	G	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||124|C17orf99|protein_coding|CODING|ENST00000586999|2|1),INTRON(MODIFIER||||188|C17orf99|protein_coding|CODING|ENST00000591995|1|1),INTRON(MODIFIER||||265|C17orf99|protein_coding|CODING|ENST00000340363|2|1);RSPOS=76148447;GMAF=0.0183;dbSNPBuildID=135;SSR=0;SAO=0;VP=050000080005000016000100;GENEINFO=C17orf99:100141515;WGT=1;VC=SNV;INT;ASP;KGPhase1;KGPROD;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:4:0:0:32,36:0,0:0,0:0,0	68:4:0:0:58,60:0,2:6,6:0,0
17	76148450	.	T	C	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||124|C17orf99|protein_coding|CODING|ENST00000586999|2|1),INTRON(MODIFIER||||188|C17orf99|protein_coding|CODING|ENST00000591995|1|1),INTRON(MODIFIER||||265|C17orf99|protein_coding|CODING|ENST00000340363|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:4:0:0:0,0:0,0:0,0:33,37	69:4:0:0:0,0:7,7:0,0:58,62
17	77656752	.	A	G	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:0:0:0:31,31:0,0:0,0:0,0	67:0:0:0:61,64:0,0:6,6:0,0
17	77656755	.	T	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:0:0:0:0,0:0,0:0,0:31,31	69:1:0:0:6,7:0,0:0,0:62,65
17	78167205	rs28505228	A	G	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||CARD14|retained_intron|CODING|ENST00000572838||1),INTRON(MODIFIER||||1004|CARD14|protein_coding|CODING|ENST00000344227|9|1),INTRON(MODIFIER||||1004|CARD14|protein_coding|CODING|ENST00000573882|11|1),INTRON(MODIFIER||||441|CARD14|protein_coding|CODING|ENST00000392434|6|1),INTRON(MODIFIER||||740|CARD14|protein_coding|CODING|ENST00000570421|9|1),INTRON(MODIFIER|||||CARD14|nonsense_mediated_decay|CODING|ENST00000575500|10|1),INTRON(MODIFIER|||||CARD14|processed_transcript|CODING|ENST00000573754|6|1),INTRON(MODIFIER|||||CARD14|processed_transcript|CODING|ENST00000574148|2|1),INTRON(MODIFIER|||||CARD14|retained_intron|CODING|ENST00000571861|5|1),INTRON(MODIFIER|||||CARD14|retained_intron|CODING|ENST00000575666|1|1);RSPOS=78167205;dbSNPBuildID=125;SSR=0;SAO=0;VP=050000080001040102000100;GENEINFO=CARD14:79092;WGT=1;VC=SNV;INT;VLD;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	44:2:0:0:42,45:0,0:0,0:0,0	89:0:0:0:80,80:0,0:9,9:0,0
17	78904240	.	G	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1177|RPTOR|protein_coding|CODING|ENST00000544334|20|1),INTRON(MODIFIER||||1335|RPTOR|protein_coding|CODING|ENST00000306801|24|1),INTRON(MODIFIER|||||RPTOR|processed_transcript|CODING|ENST00000575542|20|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	81:19:0:0:0,0:2,4:60,117:0,1	188:40:1:0:1,1:15,19:132,250:0,3
17	79620944	.	G	A	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||137|PDE6G|protein_coding|CODING|ENST00000573076|1|1),INTRON(MODIFIER||||70|PDE6G|protein_coding|CODING|ENST00000574024|1|1),INTRON(MODIFIER||||87|PDE6G|protein_coding|CODING|ENST00000331056|1|1),INTRON(MODIFIER||||87|PDE6G|protein_coding|CODING|ENST00000571224|1|1),INTRON(MODIFIER|||||PDE6G|processed_transcript|CODING|ENST00000574777|1|1),UPSTREAM(MODIFIER||||87|PDE6G|protein_coding|CODING|ENST00000571004||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:0:0:0:0,0:0,0:35,35:0,0	78:1:0:0:5,5:0,0:72,72:0,1
17	79776553	.	G	A	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||117|FAM195B|protein_coding|CODING|ENST00000576431||1),DOWNSTREAM(MODIFIER||||118|FAM195B|protein_coding|CODING|ENST00000572645||1),DOWNSTREAM(MODIFIER||||118|FAM195B|protein_coding|CODING|ENST00000575061||1),DOWNSTREAM(MODIFIER||||175|AC174470.1|protein_coding|CODING|ENST00000457257||1),DOWNSTREAM(MODIFIER||||477|GCGR|protein_coding|CODING|ENST00000400723||1),DOWNSTREAM(MODIFIER||||523|GCGR|protein_coding|CODING|ENST00000570996||1),DOWNSTREAM(MODIFIER||||63|FAM195B|protein_coding|CODING|ENST00000573478||1),DOWNSTREAM(MODIFIER||||78|FAM195B|protein_coding|CODING|ENST00000576679||1),DOWNSTREAM(MODIFIER||||92|FAM195B|protein_coding|CODING|ENST00000570507||1),DOWNSTREAM(MODIFIER||||97|FAM195B|protein_coding|CODING|ENST00000455127||1),DOWNSTREAM(MODIFIER||||97|FAM195B|protein_coding|CODING|ENST00000538396||1),DOWNSTREAM(MODIFIER||||97|FAM195B|protein_coding|CODING|ENST00000574190||1),DOWNSTREAM(MODIFIER||||97|FAM195B|protein_coding|CODING|ENST00000576730||1),DOWNSTREAM(MODIFIER|||||FAM195B|processed_transcript|CODING|ENST00000575090||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:2:0:0:0,0:0,0:37,42:1,1	89:3:0:0:5,7:0,0:81,87:0,0
17	80032690	.	A	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||2511|FASN|protein_coding|CODING|ENST00000306749||1),DOWNSTREAM(MODIFIER|||||FASN|processed_transcript|CODING|ENST00000579758||1),DOWNSTREAM(MODIFIER|||||FASN|retained_intron|CODING|ENST00000578424||1),DOWNSTREAM(MODIFIER|||||FASN|retained_intron|CODING|ENST00000584610||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	41:3:0:0:37,40:0,0:1,1:0,0	71:3:0:0:61,66:0,0:7,7:0,0
17	80108265	.	G	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||CCDC57|processed_transcript|CODING|ENST00000327026||1),INTRON(MODIFIER||||301|CCDC57|protein_coding|CODING|ENST00000324808|1|1),INTRON(MODIFIER||||352|CCDC57|protein_coding|CODING|ENST00000392346|1|1),INTRON(MODIFIER||||916|CCDC57|protein_coding|CODING|ENST00000389641|14|1),INTRON(MODIFIER||||916|CCDC57|protein_coding|CODING|ENST00000392347|14|1),INTRON(MODIFIER|||||CCDC57|processed_transcript|CODING|ENST00000582040|1|1),UPSTREAM(MODIFIER|||||RP11-1376P16.2|antisense|NON_CODING|ENST00000579979||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	41:1:0:0:0,1:0,0:40,45:0,0	68:7:0:0:1,4:8,9:52,76:0,1
17	80124212	.	C	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||751|CCDC57|protein_coding|CODING|ENST00000392343|13|1),INTRON(MODIFIER||||916|CCDC57|protein_coding|CODING|ENST00000389641|12|1),INTRON(MODIFIER||||916|CCDC57|protein_coding|CODING|ENST00000392347|12|1),INTRON(MODIFIER|||||CCDC57|processed_transcript|CODING|ENST00000327026|5|1),INTRON(MODIFIER|||||CCDC57|processed_transcript|CODING|ENST00000577530|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	28:1:0:0:0,0:27,28:0,0:0,0	60:6:0:0:0,0:49,55:0,0:5,5
17	80277494	.	G	C	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||145|SECTM1|protein_coding|CODING|ENST00000583093||1),DOWNSTREAM(MODIFIER||||149|SECTM1|protein_coding|CODING|ENST00000580437||1),DOWNSTREAM(MODIFIER||||169|SECTM1|protein_coding|CODING|ENST00000582563||1),DOWNSTREAM(MODIFIER||||177|SECTM1|protein_coding|CODING|ENST00000581691||1),DOWNSTREAM(MODIFIER||||248|SECTM1|protein_coding|CODING|ENST00000269389||1),DOWNSTREAM(MODIFIER|||||SECTM1|nonsense_mediated_decay|CODING|ENST00000581864||1),INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER||||121|CD7|protein_coding|CODING|ENST00000578509||1),UPSTREAM(MODIFIER||||140|CD7|protein_coding|CODING|ENST00000583376||1),UPSTREAM(MODIFIER||||159|CD7|protein_coding|CODING|ENST00000582480||1),UPSTREAM(MODIFIER||||221|CD7|protein_coding|CODING|ENST00000584284||1),UPSTREAM(MODIFIER||||240|CD7|protein_coding|CODING|ENST00000312648||1),UPSTREAM(MODIFIER|||||CD7|nonsense_mediated_decay|CODING|ENST00000581434||1),UPSTREAM(MODIFIER|||||CD7|retained_intron|CODING|ENST00000581744||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	55:5:0:0:0,0:0,0:50,55:0,0	87:8:0:0:1,1:6,7:72,80:0,0
17	80473437	.	A	G	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER||||660|FOXK2|protein_coding|CODING|ENST00000335255||1),UPSTREAM(MODIFIER|||||FOXK2|nonsense_mediated_decay|CODING|ENST00000473637||1),UPSTREAM(MODIFIER|||||FOXK2|retained_intron|CODING|ENST00000527313||1),UPSTREAM(MODIFIER|||||FOXK2|retained_intron|CODING|ENST00000570585||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:0:0:0:33,33:0,0:0,0:0,0	67:0:0:0:56,56:2,2:9,9:0,0
17	80544069	rs111835668	A	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||171|FOXK2|protein_coding|CODING|ENST00000531030||1),DOWNSTREAM(MODIFIER||||252|FOXK2|protein_coding|CODING|ENST00000526383||1),DOWNSTREAM(MODIFIER|||||FOXK2|processed_transcript|CODING|ENST00000571160||1),DOWNSTREAM(MODIFIER|||||RP13-638C3.3|antisense|NON_CODING|ENST00000575085||1),DOWNSTREAM(MODIFIER|||||snoU13|snoRNA|NON_CODING|ENST00000459591||1),EXON(MODIFIER|||||FOXK2|nonsense_mediated_decay|CODING|ENST00000473637|7|1),SYNONYMOUS_CODING(LOW|SILENT|gaA/gaG|E523|660|FOXK2|protein_coding|CODING|ENST00000335255|7|1);RSPOS=80544069;dbSNPBuildID=132;SSR=0;SAO=0;VP=050000000305040102000100;GENEINFO=FOXK2:3607;WGT=1;VC=SNV;REF;SYN;ASP;VLD;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:1:0:0:32,44:0,0:0,0:0,0	83:3:0:0:76,92:0,0:4,6:0,0
17	80687615	rs61085989	G	C	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||123|FN3KRP|protein_coding|CODING|ENST00000573158||1),DOWNSTREAM(MODIFIER||||126|FN3KRP|protein_coding|CODING|ENST00000577128||1),DOWNSTREAM(MODIFIER||||259|FN3KRP|protein_coding|CODING|ENST00000535965||1),DOWNSTREAM(MODIFIER||||309|FN3KRP|protein_coding|CODING|ENST00000269373||1),DOWNSTREAM(MODIFIER|||||FN3KRP|nonsense_mediated_decay|CODING|ENST00000574356||1),DOWNSTREAM(MODIFIER|||||FN3KRP|nonsense_mediated_decay|CODING|ENST00000574832||1),DOWNSTREAM(MODIFIER|||||FN3KRP|nonsense_mediated_decay|CODING|ENST00000575052||1),DOWNSTREAM(MODIFIER|||||FN3KRP|retained_intron|CODING|ENST00000571482||1),DOWNSTREAM(MODIFIER|||||FN3KRP|retained_intron|CODING|ENST00000576363||1),INTRON(MODIFIER|||||FN3KRP|nonsense_mediated_decay|CODING|ENST00000571594|2|1),INTRON(MODIFIER|||||RP11-388C12.5|lincRNA|NON_CODING|ENST00000570919|1|1);RSPOS=80687615;dbSNPBuildID=129;SSR=0;SAO=0;VP=050000000001000002000100;WGT=1;VC=SNV;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:1:0:0:0,0:0,0:31,32:0,0	57:3:0:0:0,0:7,9:47,48:0,0
17	80804243	rs28428660	T	C	.	PASS	NT=ref;QSS=23;QSS_NT=23;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1192|TBCD|protein_coding|CODING|ENST00000355528|13|1),INTRON(MODIFIER||||1230|TBCD|protein_coding|CODING|ENST00000539345|13|1),INTRON(MODIFIER||||311|TBCD|protein_coding|CODING|ENST00000397466|13|1);RSPOS=80804243;dbSNPBuildID=125;SSR=0;SAO=0;VP=050100080001040102000100;GENEINFO=TBCD:6904;WGT=1;VC=SNV;SLO;INT;VLD;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	44:0:0:0:0,0:0,0:1,1:43,45	63:4:0:0:0,0:7,9:0,1:52,53
17	80804249	rs28675271	A	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1192|TBCD|protein_coding|CODING|ENST00000355528|13|1),INTRON(MODIFIER||||1230|TBCD|protein_coding|CODING|ENST00000539345|13|1),INTRON(MODIFIER||||311|TBCD|protein_coding|CODING|ENST00000397466|13|1);RSPOS=80804249;GMAF=0.2092;dbSNPBuildID=125;SSR=0;SAO=0;VP=050100080005070116000100;GENEINFO=TBCD:6904;WGT=1;VC=SNV;SLO;INT;ASP;VLD;G5A;G5;GNO;KGPhase1;KGPROD;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	44:1:0:0:41,42:1,2:1,1:0,0	66:5:0:0:52,52:8,13:1,1:0,0
17	80808192	.	C	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1192|TBCD|protein_coding|CODING|ENST00000355528|13|1),INTRON(MODIFIER||||1230|TBCD|protein_coding|CODING|ENST00000539345|13|1),INTRON(MODIFIER||||311|TBCD|protein_coding|CODING|ENST00000397466|13|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	51:2:0:0:0,0:48,50:0,1:1,1	66:7:0:0:0,0:55,63:0,1:4,7
17	80863693	rs111560836	C	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||108|TBCD|protein_coding|CODING|ENST00000572984|5|1),INTRON(MODIFIER||||116|TBCD|protein_coding|CODING|ENST00000571712|6|1),INTRON(MODIFIER||||1192|TBCD|protein_coding|CODING|ENST00000355528|19|1),INTRON(MODIFIER||||1230|TBCD|protein_coding|CODING|ENST00000539345|19|1),INTRON(MODIFIER||||133|TBCD|protein_coding|CODING|ENST00000576996|7|1),INTRON(MODIFIER||||164|TBCD|protein_coding|CODING|ENST00000576160|7|1),INTRON(MODIFIER||||210|TBCD|protein_coding|CODING|ENST00000572953|4|1),INTRON(MODIFIER||||237|TBCD|protein_coding|CODING|ENST00000571316|5|1),INTRON(MODIFIER||||243|TBCD|protein_coding|CODING|ENST00000574422|2|1),INTRON(MODIFIER||||250|TBCD|protein_coding|CODING|ENST00000574975|3|1),INTRON(MODIFIER||||255|TBCD|protein_coding|CODING|ENST00000576760|5|1),INTRON(MODIFIER||||311|TBCD|protein_coding|CODING|ENST00000397466|19|1),INTRON(MODIFIER|||||TBCD|processed_transcript|CODING|ENST00000574801|3|1),INTRON(MODIFIER|||||TBCD|retained_intron|CODING|ENST00000571796|3|1),UPSTREAM(MODIFIER|||||TBCD|processed_transcript|CODING|ENST00000571618||1);RSPOS=80863693;dbSNPBuildID=132;SSR=0;SAO=0;VP=050000080001000102000100;GENEINFO=TBCD:6904;WGT=1;VC=SNV;INT;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:2:0:0:0,0:30,39:0,0:0,1	68:9:0:0:0,0:50,67:0,1:9,11
17	80930174	rs9906507	A	G	.	PASS	NT=ref;QSS=30;QSS_NT=30;SGT=AA->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER||||250|B3GNTL1|protein_coding|CODING|ENST00000576599|6|1),INTRON(MODIFIER||||361|B3GNTL1|protein_coding|CODING|ENST00000320865|6|1),INTRON(MODIFIER|||||B3GNTL1|nonsense_mediated_decay|CODING|ENST00000572977|2|1),INTRON(MODIFIER|||||B3GNTL1|processed_transcript|CODING|ENST00000570947|1|1),INTRON(MODIFIER|||||B3GNTL1|processed_transcript|CODING|ENST00000571954|6|1);RSPOS=80930174;dbSNPBuildID=119;SSR=0;SAO=0;VP=050100080001000102000100;GENEINFO=B3GNTL1:146712;WGT=1;VC=SNV;SLO;INT;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	26:0:0:0:26,32:0,0:0,2:0,0	28:2:0:0:18,26:0,0:8,15:0,0
17	80930176	rs9912473	T	C	.	PASS	NT=ref;QSS=32;QSS_NT=32;SGT=TT->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER||||250|B3GNTL1|protein_coding|CODING|ENST00000576599|6|1),INTRON(MODIFIER||||361|B3GNTL1|protein_coding|CODING|ENST00000320865|6|1),INTRON(MODIFIER|||||B3GNTL1|nonsense_mediated_decay|CODING|ENST00000572977|2|1),INTRON(MODIFIER|||||B3GNTL1|processed_transcript|CODING|ENST00000570947|1|1),INTRON(MODIFIER|||||B3GNTL1|processed_transcript|CODING|ENST00000571954|6|1);RSPOS=80930176;dbSNPBuildID=119;SSR=0;SAO=0;VP=050000080001000002000100;GENEINFO=B3GNTL1:146712;WGT=1;VC=SNV;INT;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	26:0:0:0:0,0:0,1:0,0:26,33	28:2:0:0:0,0:9,13:0,0:17,28
17	80983033	rs28487874	A	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||250|B3GNTL1|protein_coding|CODING|ENST00000576599|3|1),INTRON(MODIFIER||||361|B3GNTL1|protein_coding|CODING|ENST00000320865|4|1),INTRON(MODIFIER|||||B3GNTL1|processed_transcript|CODING|ENST00000570947|1|1),INTRON(MODIFIER|||||B3GNTL1|processed_transcript|CODING|ENST00000571954|4|1),INTRON(MODIFIER|||||B3GNTL1|processed_transcript|CODING|ENST00000573629|3|1);RSPOS=80983033;dbSNPBuildID=125;SSR=0;SAO=0;VP=050000080005000002000100;GENEINFO=B3GNTL1:146712;WGT=1;VC=SNV;INT;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:1:0:0:30,38:0,0:0,0:0,0	61:3:0:0:53,66:0,0:5,5:0,0
17	80984999	rs111492840	G	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||B3GNTL1|nonsense_mediated_decay|CODING|ENST00000571218||1),INTRON(MODIFIER||||250|B3GNTL1|protein_coding|CODING|ENST00000576599|3|1),INTRON(MODIFIER||||361|B3GNTL1|protein_coding|CODING|ENST00000320865|4|1),INTRON(MODIFIER|||||B3GNTL1|processed_transcript|CODING|ENST00000570947|1|1),INTRON(MODIFIER|||||B3GNTL1|processed_transcript|CODING|ENST00000571954|4|1),INTRON(MODIFIER|||||B3GNTL1|processed_transcript|CODING|ENST00000573629|3|1);RSPOS=80984999;dbSNPBuildID=132;SSR=0;SAO=0;VP=050000080001000102000100;GENEINFO=B3GNTL1:146712;WGT=1;VC=SNV;INT;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:3:0:0:0,0:0,1:28,30:0,0	77:7:0:0:7,11:0,1:63,68:0,0
17	81083302	rs28729365	T	G	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=81083302;GMAF=0.3329;dbSNPBuildID=125;SSR=0;SAO=0;VP=050000000001040016000100;WGT=1;VC=SNV;VLD;KGPhase1;KGPROD;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	25:2:0:0:0,0:0,0:0,1:23,24	48:14:0:0:0,0:0,1:8,21:26,29
17	81100264	.	A	G	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||AC139099.4|lincRNA|NON_CODING|ENST00000572343|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	26:1:0:0:24,25:1,1:0,0:0,0	37:2:0:0:29,30:0,0:6,12:0,0
17	81100270	rs11510303	A	C	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||AC139099.4|lincRNA|NON_CODING|ENST00000572343|2|1);RSPOS=81100270;GMAF=0.0801;dbSNPBuildID=120;SSR=0;SAO=0;VP=050000000001040016000100;WGT=1;VC=SNV;VLD;KGPhase1;KGPROD;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	26:1:0:0:25,26:0,0:0,0:0,0	36:2:0:0:26,27:7,11:1,2:0,0
18	107071	rs4797370	T	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=107071;dbSNPBuildID=111;SSR=0;SAO=0;VP=050000000005000102000100;WGT=1;VC=SNV;ASP;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	42:3:0:0:0,0:0,1:0,0:39,51	104:12:0:0:0,2:8,14:1,1:83,120
18	1629519	.	A	G	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-476K15.1|lincRNA|NON_CODING|ENST00000583163|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	51:6:4:0:45,83:0,0:0,0:0,0	114:3:16:0:106,140:0,0:5,7:0,0
18	1629520	.	T	A	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-476K15.1|lincRNA|NON_CODING|ENST00000583163|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	51:6:3:0:0,0:0,0:1,1:44,82	116:3:16:0:6,8:0,0:0,0:107,141
18	2725934	.	A	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||SMCHD1|retained_intron|CODING|ENST00000581711||1),INTRON(MODIFIER||||1917|SMCHD1|protein_coding|CODING|ENST00000261598|21|1),INTRON(MODIFIER||||2005|SMCHD1|protein_coding|CODING|ENST00000320876|21|1),INTRON(MODIFIER|||||RP11-703M24.5|antisense|NON_CODING|ENST00000583546|2|1),INTRON(MODIFIER|||||SMCHD1|nonsense_mediated_decay|CODING|ENST00000577880|10|1),INTRON(MODIFIER|||||SMCHD1|retained_intron|CODING|ENST00000581383|1|1),UPSTREAM(MODIFIER|||||SMCHD1|retained_intron|CODING|ENST00000581631||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:0:0:0:29,29:0,0:0,0:0,0	82:1:0:0:76,78:5,5:0,0:0,0
18	5357767	.	C	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:0:0:0:0,0:31,31:0,0:0,0	58:1:0:0:6,6:51,52:0,0:0,0
18	5477303	.	G	T	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||112|EPB41L3|protein_coding|CODING|ENST00000585142||1),DOWNSTREAM(MODIFIER||||115|EPB41L3|protein_coding|CODING|ENST00000581833||1),DOWNSTREAM(MODIFIER||||124|EPB41L3|protein_coding|CODING|ENST00000580989||1),DOWNSTREAM(MODIFIER||||126|EPB41L3|protein_coding|CODING|ENST00000580308||1),DOWNSTREAM(MODIFIER||||126|EPB41L3|protein_coding|CODING|ENST00000584015||1),DOWNSTREAM(MODIFIER||||78|EPB41L3|protein_coding|CODING|ENST00000580179||1),DOWNSTREAM(MODIFIER||||89|EPB41L3|protein_coding|CODING|ENST00000582703||1),DOWNSTREAM(MODIFIER||||95|EPB41L3|protein_coding|CODING|ENST00000582592||1),DOWNSTREAM(MODIFIER|||||EPB41L3|processed_transcript|CODING|ENST00000578431||1),INTRON(MODIFIER||||1087|EPB41L3|protein_coding|CODING|ENST00000341928|3|1),INTRON(MODIFIER||||1087|EPB41L3|protein_coding|CODING|ENST00000342933|3|1),INTRON(MODIFIER||||146|EPB41L3|protein_coding|CODING|ENST00000584670|2|1),INTRON(MODIFIER||||161|EPB41L3|protein_coding|CODING|ENST00000578503|2|1),INTRON(MODIFIER||||161|EPB41L3|protein_coding|CODING|ENST00000584651|3|1),INTRON(MODIFIER||||865|EPB41L3|protein_coding|CODING|ENST00000400111|3|1),INTRON(MODIFIER||||865|EPB41L3|protein_coding|CODING|ENST00000540638|3|1),INTRON(MODIFIER||||883|EPB41L3|protein_coding|CODING|ENST00000544123|3|1),INTRON(MODIFIER|||||EPB41L3|processed_transcript|CODING|ENST00000545076|5|1),INTRON(MODIFIER|||||EPB41L3|processed_transcript|CODING|ENST00000581454|3|1),INTRON(MODIFIER|||||EPB41L3|retained_intron|CODING|ENST00000580866|2|1),INTRON(MODIFIER|||||RP11-286N3.1|antisense|NON_CODING|ENST00000577527|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:0:0:0:0,0:0,0:36,36:0,0	78:0:0:0:0,0:0,0:73,74:5,5
18	5507862	.	T	G	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1087|EPB41L3|protein_coding|CODING|ENST00000341928|1|1),INTRON(MODIFIER||||1087|EPB41L3|protein_coding|CODING|ENST00000342933|1|1),INTRON(MODIFIER||||112|EPB41L3|protein_coding|CODING|ENST00000585142|1|1),INTRON(MODIFIER||||115|EPB41L3|protein_coding|CODING|ENST00000581833|2|1),INTRON(MODIFIER||||124|EPB41L3|protein_coding|CODING|ENST00000580989|1|1),INTRON(MODIFIER||||126|EPB41L3|protein_coding|CODING|ENST00000584015|1|1),INTRON(MODIFIER||||146|EPB41L3|protein_coding|CODING|ENST00000584670|2|1),INTRON(MODIFIER||||161|EPB41L3|protein_coding|CODING|ENST00000584651|1|1),INTRON(MODIFIER||||78|EPB41L3|protein_coding|CODING|ENST00000580179|3|1),INTRON(MODIFIER||||865|EPB41L3|protein_coding|CODING|ENST00000400111|1|1),INTRON(MODIFIER||||865|EPB41L3|protein_coding|CODING|ENST00000540638|1|1),INTRON(MODIFIER||||883|EPB41L3|protein_coding|CODING|ENST00000544123|1|1),INTRON(MODIFIER||||89|EPB41L3|protein_coding|CODING|ENST00000582703|3|1),INTRON(MODIFIER||||95|EPB41L3|protein_coding|CODING|ENST00000582592|1|1),INTRON(MODIFIER|||||EPB41L3|processed_transcript|CODING|ENST00000545076|3|1),INTRON(MODIFIER|||||EPB41L3|processed_transcript|CODING|ENST00000578431|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:1:0:0:0,0:0,0:0,0:35,36	62:0:0:0:0,0:0,0:6,6:56,56
18	5910672	.	A	C	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||RP11-945C19.4|antisense|NON_CODING|ENST00000577694||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	42:1:0:0:41,42:0,0:0,0:0,0	73:1:0:0:68,69:4,4:0,0:0,0
18	6722410	.	T	A	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:1:0:0:0,0:0,0:0,0:35,36	62:0:0:0:5,5:0,0:0,0:57,57
18	7271746	.	C	T	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	42:0:0:0:0,0:42,42:0,0:0,0	62:2:0:0:0,0:53,53:1,2:6,7
18	7959183	.	G	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1239|PTPRM|protein_coding|CODING|ENST00000444013|3|1),INTRON(MODIFIER||||1390|PTPRM|protein_coding|CODING|ENST00000400053|7|1),INTRON(MODIFIER||||1452|PTPRM|protein_coding|CODING|ENST00000332175|7|1),INTRON(MODIFIER||||1465|PTPRM|protein_coding|CODING|ENST00000580170|7|1),INTRON(MODIFIER||||1466|PTPRM|protein_coding|CODING|ENST00000400060|7|1),INTRON(MODIFIER||||172|PTPRM|protein_coding|CODING|ENST00000578916|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:0:0:0:0,0:0,0:32,32:0,0	79:1:0:0:0,0:0,0:74,77:4,4
18	9024010	.	C	T	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||RPS4XP19|processed_pseudogene|NON_CODING|ENST00000460237||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:0:0:0:0,0:36,39:0,0:0,0	79:0:0:0:0,0:70,74:0,0:9,14
18	10506915	.	T	C	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	43:0:0:0:0,0:0,0:0,0:43,43	84:3:0:0:0,0:6,6:0,0:75,80
18	11613596	.	G	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||RP11-677O4.3|processed_pseudogene|NON_CODING|ENST00000424015||1),DOWNSTREAM(MODIFIER|||||RP11-677O4.3|processed_pseudogene|NON_CODING|ENST00000588001||1),INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||RP11-677O4.5|processed_pseudogene|NON_CODING|ENST00000590231||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:5:0:0:0,0:0,0:27,34:0,0	63:7:0:0:6,7:0,1:50,65:0,0
18	11613988	rs143543648	G	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||RP11-677O4.3|processed_pseudogene|NON_CODING|ENST00000424015||1),DOWNSTREAM(MODIFIER|||||RP11-677O4.3|processed_pseudogene|NON_CODING|ENST00000588001||1),INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||RP11-677O4.5|processed_pseudogene|NON_CODING|ENST00000590231||1);RSPOS=11613988;GMAF=0.168;dbSNPBuildID=134;SSR=0;SAO=0;VP=050000000005000014000100;WGT=1;VC=SNV;ASP;KGPhase1;KGPROD	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	27:1:0:0:0,0:0,1:26,26:0,0	65:6:0:0:9,10:0,0:50,57:0,0
18	12174886	.	T	C	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:1:0:0:0,0:0,0:0,0:34,35	78:1:0:0:0,0:5,6:0,0:72,73
18	14067427	.	T	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||ZNF519|processed_transcript|CODING|ENST00000592345|4|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:0:0:0:0,0:0,0:0,0:32,32	80:1:0:0:0,0:5,5:0,0:74,75
18	14182707	rs75437129	T	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||ANKRD20A5P|processed_transcript|NON_CODING|ENST00000581181|1|1),INTRON(MODIFIER|||||ANKRD20A5P|processed_transcript|NON_CODING|ENST00000581363|1|1),INTRON(MODIFIER|||||ANKRD20A5P|processed_transcript|NON_CODING|ENST00000581935|1|1),INTRON(MODIFIER|||||ANKRD20A5P|transcribed_unprocessed_pseudogene|NON_CODING|ENST00000431648|1|1),INTRON(MODIFIER|||||ANKRD20A5P|unprocessed_pseudogene|NON_CODING|ENST00000399814|1|1);RSPOS=14182707;dbSNPBuildID=131;SSR=0;SAO=0;VP=050000080005040102000100;GENEINFO=ANKRD20A5P:440482;WGT=1;VC=SNV;INT;ASP;VLD;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:0:0:0:0,0:0,1:0,0:31,31	90:0:0:0:0,0:9,19:0,0:81,83
18	14183470	rs199678630	G	A	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||ANKRD20A5P|processed_transcript|NON_CODING|ENST00000581181|1|1),INTRON(MODIFIER|||||ANKRD20A5P|processed_transcript|NON_CODING|ENST00000581363|1|1),INTRON(MODIFIER|||||ANKRD20A5P|processed_transcript|NON_CODING|ENST00000581935|1|1),INTRON(MODIFIER|||||ANKRD20A5P|transcribed_unprocessed_pseudogene|NON_CODING|ENST00000431648|1|1),INTRON(MODIFIER|||||ANKRD20A5P|unprocessed_pseudogene|NON_CODING|ENST00000399814|1|1);RSPOS=14183470;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000080005000002000100;WGT=1;VC=SNV;INT;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	45:2:0:0:0,0:0,0:43,45:0,0	119:0:0:0:6,8:0,0:113,122:0,0
18	14183478	rs200301460	C	T	.	PASS	NT=ref;QSS=23;QSS_NT=23;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||ANKRD20A5P|processed_transcript|NON_CODING|ENST00000581181|1|1),INTRON(MODIFIER|||||ANKRD20A5P|processed_transcript|NON_CODING|ENST00000581363|1|1),INTRON(MODIFIER|||||ANKRD20A5P|processed_transcript|NON_CODING|ENST00000581935|1|1),INTRON(MODIFIER|||||ANKRD20A5P|transcribed_unprocessed_pseudogene|NON_CODING|ENST00000431648|1|1),INTRON(MODIFIER|||||ANKRD20A5P|unprocessed_pseudogene|NON_CODING|ENST00000399814|1|1);RSPOS=14183478;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000080005000002000100;WGT=1;VC=SNV;INT;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	48:1:0:0:1,1:46,46:0,1:0,0	126:0:0:0:0,0:120,129:0,0:6,8
18	14347703	.	T	C	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:0:0:0:0,0:0,1:0,0:34,34	77:1:0:0:0,0:11,19:0,0:65,66
18	14876722	.	A	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||RP11-527H14.6|processed_transcript|NON_CODING|ENST00000582962||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:0:0:0:29,29:0,0:0,0:0,0	75:1:0:0:67,69:0,0:0,0:7,7
18	14984103	rs113562884	A	G	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||RP11-527H14.1|lincRNA|NON_CODING|ENST00000583306||1),INTERGENIC(MODIFIER||||||||||1);RSPOS=14984103;dbSNPBuildID=132;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:0:0:0:40,41:0,0:0,0:0,0	88:0:0:0:80,89:0,0:8,12:0,0
18	15165282	.	G	A	.	PASS	NT=ref;QSS=25;QSS_NT=25;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||RP11-805F19.1|processed_transcript|NON_CODING|ENST00000581690||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	54:3:2:0:0,0:0,0:51,81:0,0	123:6:9:0:8,12:0,0:109,177:0,0
18	15167442	.	C	T	.	PASS	NT=ref;QSS=30;QSS_NT=30;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||RP11-805F19.1|processed_transcript|NON_CODING|ENST00000581690||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	63:2:0:0:0,0:61,72:0,1:0,0	121:2:0:0:0,1:110,148:0,1:9,12
18	15173497	.	G	T	.	PASS	NT=ref;QSS=24;QSS_NT=24;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	64:1:0:0:0,0:0,0:63,81:0,0	167:6:0:0:0,0:0,0:151,184:10,14
18	15182585	.	T	C	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:0:0:0:0,0:0,0:0,0:39,40	95:2:0:0:0,0:8,9:0,2:85,92
18	15199179	.	A	G	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||RP11-454P7.3|processed_transcript|NON_CODING|ENST00000581666||1),UPSTREAM(MODIFIER|||||RP11-454P7.3|transcribed_processed_pseudogene|NON_CODING|ENST00000581653||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	46:2:0:0:44,59:0,0:0,0:0,0	107:3:0:0:96,112:0,0:8,15:0,0
18	15206612	rs72479828	G	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=15206612;dbSNPBuildID=130;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:0:0:0:0,0:0,0:33,34:0,0	98:1:0:0:7,8:0,0:90,97:0,0
18	15237311	.	C	T	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	44:3:0:0:0,0:40,49:1,1:0,0	96:1:0:0:0,0:86,99:1,1:8,8
18	15272476	.	A	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=AA->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=DOWNSTREAM(MODIFIER|||||RP11-454P7.1|unprocessed_pseudogene|NON_CODING|ENST00000545779||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:0:0:0:33,33:0,0:0,1:0,0	80:2:0:0:71,72:0,0:7,10:0,0
18	15321811	.	C	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||AP005901.1|processed_transcript|NON_CODING|ENST00000455308|4|1),INTRON(MODIFIER|||||AP005901.1|processed_transcript|NON_CODING|ENST00000504516|3|1),INTRON(MODIFIER|||||AP005901.1|transcribed_unprocessed_pseudogene|NON_CODING|ENST00000508721|5|1),INTRON(MODIFIER|||||AP005901.1|unprocessed_pseudogene|NON_CODING|ENST00000333851|5|1),UPSTREAM(MODIFIER|||||U6|snRNA|NON_CODING|ENST00000410155||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:0:0:0:0,0:31,32:0,0:0,0	83:0:0:0:10,10:73,73:0,0:0,0
18	15383907	.	T	A	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	98:15:0:0:0,6:0,6:0,1:83,244	209:41:0:0:5,37:0,24:0,2:163,572
18	15406658	rs74587249	T	C	.	PASS	NT=ref;QSS=23;QSS_NT=23;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=15406658;dbSNPBuildID=131;SSR=0;SAO=0;VP=050000000005000102000100;WGT=1;VC=SNV;ASP;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	48:3:0:0:0,2:0,0:0,0:45,56	158:4:0:0:0,0:12,22:0,0:142,155
18	15406661	rs77549088	T	C	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=TT->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=15406661;dbSNPBuildID=131;SSR=0;SAO=0;VP=050000000005000102000100;WGT=1;VC=SNV;ASP;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	48:3:0:0:0,0:0,1:0,0:45,56	155:4:0:0:0,0:8,15:0,0:143,158
18	19229370	.	A	G	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||214|ABHD3|protein_coding|CODING|ENST00000578270||1),DOWNSTREAM(MODIFIER||||356|ABHD3|protein_coding|CODING|ENST00000580981||1),DOWNSTREAM(MODIFIER||||409|ABHD3|protein_coding|CODING|ENST00000289119||1),DOWNSTREAM(MODIFIER|||||ABHD3|retained_intron|CODING|ENST00000577564||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:1:0:0:30,31:0,0:0,0:0,0	73:6:0:0:59,61:0,0:8,12:0,0
18	19812731	.	T	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||RP11-627G18.4|lincRNA|NON_CODING|ENST00000578741||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	75:1:0:0:3,4:3,6:0,0:68,98	146:4:2:0:1,2:16,25:1,1:124,163
18	20189606	.	T	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:0:0:0:0,0:0,0:0,0:31,32	76:0:0:0:4,4:0,0:0,0:72,72
18	20461933	.	C	G	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||9|RBBP8|protein_coding|CODING|ENST00000583700|1|1),INTRON(MODIFIER|||||RP11-370A5.1|antisense|NON_CODING|ENST00000583086|1|1),INTRON(MODIFIER|||||RP11-739L10.1|antisense|NON_CODING|ENST00000578831|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:1:0:0:0,0:32,33:0,0:0,0	71:0:0:0:1,1:64,64:6,6:0,0
18	21213771	.	G	T	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||142|ANKRD29|protein_coding|CODING|ENST00000586087|4|1),INTRON(MODIFIER||||268|ANKRD29|protein_coding|CODING|ENST00000284207|5|1),INTRON(MODIFIER||||268|ANKRD29|protein_coding|CODING|ENST00000322980|5|1),INTRON(MODIFIER||||301|ANKRD29|protein_coding|CODING|ENST00000592179|5|1),INTRON(MODIFIER|||||ANKRD29|retained_intron|CODING|ENST00000591280|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:1:0:0:0,0:1,1:36,37:0,0	48:0:0:0:0,0:0,0:44,46:4,4
18	21462467	.	G	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1668|LAMA3|protein_coding|CODING|ENST00000587184|3|1),INTRON(MODIFIER||||1724|LAMA3|protein_coding|CODING|ENST00000269217|3|1),INTRON(MODIFIER||||3277|LAMA3|protein_coding|CODING|ENST00000399516|40|1),INTRON(MODIFIER||||3333|LAMA3|protein_coding|CODING|ENST00000313654|40|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	25:1:0:0:0,0:0,0:24,25:0,0	68:2:0:0:0,0:0,0:57,58:9,11
18	21786594	.	C	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||437|OSBPL1A|protein_coding|CODING|ENST00000399443|3|1),INTRON(MODIFIER||||568|OSBPL1A|protein_coding|CODING|ENST00000357041|5|1),INTRON(MODIFIER||||950|OSBPL1A|protein_coding|CODING|ENST00000319481|17|1),INTRON(MODIFIER|||||OSBPL1A|nonsense_mediated_decay|CODING|ENST00000578055|3|1),INTRON(MODIFIER|||||OSBPL1A|retained_intron|CODING|ENST00000585247|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:0:0:0:0,0:32,32:0,0:0,0	70:1:0:0:0,0:64,65:0,0:5,5
18	22062464	.	C	T	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||302|HRH4|protein_coding|CODING|ENST00000426880||1),DOWNSTREAM(MODIFIER||||390|HRH4|protein_coding|CODING|ENST00000256906||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	42:1:0:0:0,0:41,42:0,0:0,0	69:0:0:0:0,0:64,68:0,0:5,6
18	22291577	.	T	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=TT->AT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	23:0:0:0:0,0:0,0:0,0:23,27	47:1:0:0:8,9:0,0:0,0:38,55
18	22291598	.	A	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	21:0:0:0:21,25:0,0:0,0:0,0	42:0:0:0:34,51:0,0:0,0:8,9
18	22291600	.	G	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->CG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	21:0:0:0:0,0:0,0:20,24:1,1	40:0:0:0:0,0:8,9:32,49:0,0
18	22381872	.	A	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-449D8.5|lincRNA|NON_CODING|ENST00000582650|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:0:0:0:32,32:0,0:0,0:0,0	78:1:0:0:73,74:0,0:4,4:0,0
18	22518601	.	A	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-958F21.1|lincRNA|NON_CODING|ENST00000580984|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:1:0:0:32,33:0,0:0,0:0,0	72:0:0:0:66,66:0,0:0,0:6,6
18	24173390	.	T	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||257|KCTD1|protein_coding|CODING|ENST00000317932|1|1),INTRON(MODIFIER||||257|KCTD1|protein_coding|CODING|ENST00000579973|2|1),INTRON(MODIFIER||||259|KCTD1|protein_coding|CODING|ENST00000580191|1|1),INTRON(MODIFIER|||||KCTD1|processed_transcript|CODING|ENST00000584630|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	28:0:0:0:1,1:0,0:1,1:26,26	70:4:0:0:3,3:0,0:14,18:49,49
18	24173471	.	T	G	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=TT->GT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER||||257|KCTD1|protein_coding|CODING|ENST00000317932|1|1),INTRON(MODIFIER||||257|KCTD1|protein_coding|CODING|ENST00000579973|2|1),INTRON(MODIFIER||||259|KCTD1|protein_coding|CODING|ENST00000580191|1|1),INTRON(MODIFIER|||||KCTD1|processed_transcript|CODING|ENST00000584630|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	26:2:0:0:1,2:0,0:0,1:23,23	71:8:0:0:2,3:0,0:17,22:44,47
18	25736757	rs35695192	T	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||72|CDH2|protein_coding|CODING|ENST00000413878|1|1),INTRON(MODIFIER||||906|CDH2|protein_coding|CODING|ENST00000269141|1|1);RSPOS=25736757;dbSNPBuildID=126;SSR=0;SAO=0;VP=050000080001000002000100;GENEINFO=CDH2:1000;WGT=1;VC=SNV;INT;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	46:2:0:0:0,0:1,1:0,0:43,47	84:0:0:0:0,0:12,13:0,0:72,79
18	26741660	.	G	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:1:0:0:0,0:0,0:28,29:0,0	73:0:0:0:0,0:0,0:67,68:6,6
18	27811007	rs200630378	T	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=27811007;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:1:0:0:0,0:0,0:0,0:30,39	75:2:0:0:0,0:7,10:1,1:65,84
18	27851204	.	C	A	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:0:0:0:0,0:36,36:0,0:0,0	62:0:0:0:7,7:55,55:0,0:0,0
18	29660761	.	C	T	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-53I6.2|processed_transcript|NON_CODING|ENST00000583184|4|1),UPSTREAM(MODIFIER|||||RP11-53I6.1|processed_pseudogene|NON_CODING|ENST00000484967||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:1:0:0:0,0:38,40:0,0:0,0	78:1:0:0:0,0:72,73:0,0:5,5
18	31539516	.	G	C	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||218|NOL4|protein_coding|CODING|ENST00000586553|2|1),INTRON(MODIFIER||||353|NOL4|protein_coding|CODING|ENST00000535384|2|1),INTRON(MODIFIER||||419|NOL4|protein_coding|CODING|ENST00000535475|7|1),INTRON(MODIFIER||||422|NOL4|protein_coding|CODING|ENST00000269185|6|1),INTRON(MODIFIER||||536|NOL4|protein_coding|CODING|ENST00000589544|6|1),INTRON(MODIFIER||||558|NOL4|protein_coding|CODING|ENST00000590712|6|1),INTRON(MODIFIER||||564|NOL4|protein_coding|CODING|ENST00000538587|6|1),INTRON(MODIFIER||||638|NOL4|protein_coding|CODING|ENST00000261592|6|1),INTRON(MODIFIER|||||NOL4|nonsense_mediated_decay|CODING|ENST00000586314|7|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:0:0:0:0,0:0,0:33,33:0,0	77:0:0:0:0,0:7,7:69,69:1,1
18	31686392	.	G	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||419|NOL4|protein_coding|CODING|ENST00000535475|3|1),INTRON(MODIFIER||||422|NOL4|protein_coding|CODING|ENST00000269185|2|1),INTRON(MODIFIER||||536|NOL4|protein_coding|CODING|ENST00000589544|2|1),INTRON(MODIFIER||||558|NOL4|protein_coding|CODING|ENST00000590712|2|1),INTRON(MODIFIER||||564|NOL4|protein_coding|CODING|ENST00000538587|2|1),INTRON(MODIFIER||||638|NOL4|protein_coding|CODING|ENST00000261592|2|1),INTRON(MODIFIER|||||NOL4|nonsense_mediated_decay|CODING|ENST00000586309|3|1),INTRON(MODIFIER|||||NOL4|nonsense_mediated_decay|CODING|ENST00000586314|3|1),INTRON(MODIFIER|||||NOL4|nonsense_mediated_decay|CODING|ENST00000591917|3|1),INTRON(MODIFIER|||||NOL4|processed_transcript|CODING|ENST00000587953|3|1),INTRON(MODIFIER|||||NOL4|processed_transcript|CODING|ENST00000587971|2|1),INTRON(MODIFIER|||||NOL4|processed_transcript|CODING|ENST00000588280|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:0:0:0:0,0:0,0:29,29:0,0	81:1:0:0:0,0:0,0:72,72:8,9
18	32020260	.	C	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:0:0:0:0,0:35,36:0,0:0,0	89:0:0:0:0,0:80,81:0,0:9,9
18	32071728	.	C	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER||||118|DTNA|protein_coding|CODING|ENST00000590412||1),UPSTREAM(MODIFIER||||374|DTNA|protein_coding|CODING|ENST00000315456||1),UPSTREAM(MODIFIER||||686|DTNA|protein_coding|CODING|ENST00000283365||1),UPSTREAM(MODIFIER|||||DTNA|processed_transcript|CODING|ENST00000588506||1),UPSTREAM(MODIFIER|||||DTNA|processed_transcript|CODING|ENST00000588771||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:0:0:0:0,0:30,32:0,0:0,0	89:1:0:0:1,1:82,83:0,0:5,5
18	32089243	.	A	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||118|DTNA|protein_coding|CODING|ENST00000590412|1|1),INTRON(MODIFIER||||374|DTNA|protein_coding|CODING|ENST00000315456|1|1),INTRON(MODIFIER||||686|DTNA|protein_coding|CODING|ENST00000283365|1|1),INTRON(MODIFIER|||||DTNA|processed_transcript|CODING|ENST00000588506|1|1),INTRON(MODIFIER|||||DTNA|processed_transcript|CODING|ENST00000588771|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:1:0:0:31,32:0,0:0,0:0,0	80:0:0:0:76,76:4,4:0,0:0,0
18	33341741	.	A	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:1:0:0:29,30:0,0:0,0:0,0	79:3:0:0:70,74:0,0:0,0:6,6
18	33341747	.	C	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:0:0:0:0,0:33,33:0,0:0,0	79:2:0:0:0,0:71,74:0,0:6,6
18	34605336	.	C	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||279|KIAA1328|protein_coding|CODING|ENST00000435985|6|1),INTRON(MODIFIER||||279|KIAA1328|protein_coding|CODING|ENST00000586135|3|1),INTRON(MODIFIER||||450|KIAA1328|protein_coding|CODING|ENST00000543923|5|1),INTRON(MODIFIER||||573|KIAA1328|protein_coding|CODING|ENST00000591619|6|1),INTRON(MODIFIER||||577|KIAA1328|protein_coding|CODING|ENST00000280020|6|1),INTRON(MODIFIER|||||KIAA1328|nonsense_mediated_decay|CODING|ENST00000590617|5|1),INTRON(MODIFIER|||||KIAA1328|nonsense_mediated_decay|CODING|ENST00000592611|5|1),INTRON(MODIFIER|||||KIAA1328|processed_transcript|CODING|ENST00000591911|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:0:0:0:0,0:30,30:0,0:0,0	76:0:0:0:7,7:69,69:0,0:0,0
18	35642688	.	G	T	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	41:2:0:0:0,0:0,1:39,41:0,0	83:1:0:0:0,0:1,1:75,76:6,6
18	36124417	.	C	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	26:2:0:0:0,0:24,26:0,0:0,0	62:7:1:0:1,1:45,47:0,0:9,14
18	36151631	.	C	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:0:0:0:0,0:33,34:0,0:0,0	58:1:0:0:4,4:53,55:0,0:0,0
18	37535756	.	G	T	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:1:0:0:1,1:0,0:35,37:0,0	83:1:0:0:0,0:0,0:74,75:8,8
18	37988839	.	G	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:0:0:0:0,0:0,0:29,29:0,0	70:1:0:0:6,6:0,0:62,63:1,1
18	38696843	.	A	T	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:0:0:0:36,36:1,1:0,0:0,0	85:0:0:0:79,79:0,0:0,0:6,6
18	39755127	.	G	T	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:0:0:0:0,0:0,0:35,35:0,0	69:0:0:0:0,0:0,0:60,60:9,9
18	40744567	.	T	A	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:0:0:0:0,0:0,0:0,0:35,35	63:0:0:0:9,9:0,0:0,0:54,54
18	42217417	.	C	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:0:0:0:0,0:29,29:0,0:0,0	61:0:0:0:6,6:55,55:0,0:0,0
18	43491075	rs12960842	C	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||EPG5|processed_transcript|CODING|ENST00000586655||1),INTRON(MODIFIER||||2579|EPG5|protein_coding|CODING|ENST00000282041|22|1),INTRON(MODIFIER|||||EPG5|nonsense_mediated_decay|CODING|ENST00000587884|5|1),INTRON(MODIFIER|||||EPG5|nonsense_mediated_decay|CODING|ENST00000590884|5|1),INTRON(MODIFIER|||||EPG5|nonsense_mediated_decay|CODING|ENST00000592272|5|1),INTRON(MODIFIER|||||EPG5|processed_transcript|CODING|ENST00000585906|6|1),INTRON(MODIFIER|||||EPG5|retained_intron|CODING|ENST00000587974|22|1);RSPOS=43491075;GMAF=0.4167;dbSNPBuildID=121;SSR=0;SAO=0;VP=050000080005040116000100;GENEINFO=EPG5:57724;WGT=1;VC=SNV;INT;ASP;VLD;GNO;KGPhase1;KGPROD;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:0:0:0:0,0:35,35:0,0:0,0	62:0:0:0:0,0:58,58:0,0:4,4
18	43918551	.	G	A	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||22|RNF165|protein_coding|CODING|ENST00000587853||1),DOWNSTREAM(MODIFIER||||22|RNF165|protein_coding|CODING|ENST00000590330||1),DOWNSTREAM(MODIFIER||||68|RNF165|protein_coding|CODING|ENST00000588679||1),INTRON(MODIFIER||||154|RNF165|protein_coding|CODING|ENST00000543885|1|1),INTRON(MODIFIER||||155|RNF165|protein_coding|CODING|ENST00000593230|1|1),INTRON(MODIFIER||||346|RNF165|protein_coding|CODING|ENST00000269439|1|1),INTRON(MODIFIER|||||RNF165|nonsense_mediated_decay|CODING|ENST00000586604|1|1),INTRON(MODIFIER|||||RNF165|nonsense_mediated_decay|CODING|ENST00000592129|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:0:0:0:0,0:0,0:39,39:0,0	82:1:0:0:5,5:0,0:76,77:0,0
18	44885909	.	T	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	28:1:0:0:0,0:0,0:0,0:27,29	73:0:0:0:0,0:7,7:0,0:66,66
18	45170697	.	G	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:1:0:0:0,0:0,0:30,31:0,0	78:2:0:0:1,1:4,4:71,73:0,0
18	46242503	.	A	G	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||CTIF|processed_transcript|CODING|ENST00000589585||1),INTRON(MODIFIER||||193|CTIF|protein_coding|CODING|ENST00000587752|7|1),INTRON(MODIFIER||||598|CTIF|protein_coding|CODING|ENST00000256413|7|1),INTRON(MODIFIER||||600|CTIF|protein_coding|CODING|ENST00000382998|8|1),INTRON(MODIFIER|||||CTIF|processed_transcript|CODING|ENST00000587769|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	44:0:0:0:44,44:0,0:0,0:0,0	72:0:0:0:67,68:0,0:5,5:0,0
18	46449586	.	C	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||157|SMAD7|protein_coding|CODING|ENST00000586093|2|1),INTRON(MODIFIER||||211|SMAD7|protein_coding|CODING|ENST00000591805|3|1),INTRON(MODIFIER||||425|SMAD7|protein_coding|CODING|ENST00000589634|3|1),INTRON(MODIFIER||||426|SMAD7|protein_coding|CODING|ENST00000262158|3|1),INTRON(MODIFIER|||||SMAD7|processed_transcript|CODING|ENST00000585986|2|1),INTRON(MODIFIER|||||SMAD7|processed_transcript|CODING|ENST00000587336|1|1),INTRON(MODIFIER|||||SMAD7|processed_transcript|CODING|ENST00000588190|1|1),INTRON(MODIFIER|||||SMAD7|retained_intron|CODING|ENST00000545051|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:4:0:0:0,0:30,33:0,1:0,0	86:4:0:0:6,6:76,80:0,0:0,0
18	51030460	.	G	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1076|DCC|protein_coding|CODING|ENST00000581580|24|1),INTRON(MODIFIER||||1447|DCC|protein_coding|CODING|ENST00000442544|27|1),INTRON(MODIFIER|||||DCC|retained_intron|CODING|ENST00000579702|1|1),INTRON(MODIFIER|||||RP11-671P2.1|antisense|NON_CODING|ENST00000582064|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:0:0:0:0,0:0,0:35,35:0,0	66:0:0:0:0,0:0,0:61,61:5,5
18	53553284	.	C	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-214L13.1|lincRNA|NON_CODING|ENST00000563553|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:0:0:0:0,0:31,31:0,0:0,0	79:1:0:0:0,0:73,74:0,0:5,5
18	54904149	.	G	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:1:0:0:0,0:0,0:32,33:0,0	70:3:0:0:7,8:0,0:60,62:0,0
18	56086602	.	C	T	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||RP11-1151B14.2|lincRNA|NON_CODING|ENST00000585470||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:0:0:0:0,0:37,38:0,0:0,0	87:0:0:0:0,0:77,77:0,0:10,10
18	56087235	rs151318800	C	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||RP11-1151B14.2|lincRNA|NON_CODING|ENST00000585470||1),INTERGENIC(MODIFIER||||||||||1);RSPOS=56087235;dbSNPBuildID=134;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	27:0:0:0:0,0:27,27:0,0:0,0	77:2:0:0:0,0:67,69:8,9:0,0
18	56852256	.	A	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:1:0:0:31,32:0,0:0,0:0,0	67:0:0:0:62,63:0,0:5,6:0,0
18	57938621	.	T	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	28:0:0:0:0,0:0,0:0,0:28,28	77:0:0:0:8,8:0,0:0,0:69,69
18	58393405	.	G	T	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-325K19.1|lincRNA|NON_CODING|ENST00000591869|5|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:0:0:0:0,0:0,0:35,35:0,0	85:0:0:0:0,0:0,0:74,74:11,11
18	58478925	.	C	A	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-325K19.1|lincRNA|NON_CODING|ENST00000591869|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:1:0:0:0,0:35,36:0,0:0,0	65:0:0:0:4,4:61,61:0,0:0,0
18	58557851	.	G	T	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-325K19.1|lincRNA|NON_CODING|ENST00000591869|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	41:1:0:0:0,0:0,0:40,41:0,0	69:3:0:0:0,0:1,1:60,61:5,7
18	59132574	.	C	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||801|CDH20|protein_coding|CODING|ENST00000262717|1|1),INTRON(MODIFIER||||801|CDH20|protein_coding|CODING|ENST00000538374|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:0:0:0:0,0:31,31:0,0:0,0	74:1:0:0:5,5:68,69:0,0:0,0
18	59477118	.	G	A	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=UTR_3_PRIME(MODIFIER||||203|RNF152|protein_coding|CODING|ENST00000312828|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:5:0:0:0,0:0,0:35,40:0,0	74:4:0:0:6,6:0,0:64,68:0,0
18	62364975	.	T	C	.	PASS	NT=ref;QSS=24;QSS_NT=24;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	45:0:0:0:0,0:0,0:0,0:45,45	77:0:0:0:0,0:10,10:0,0:67,67
18	64744744	.	T	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=TT->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||MIR5011|miRNA|NON_CODING|ENST00000578054||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	52:1:0:0:0,0:0,2:0,0:51,62	128:3:0:0:0,0:7,8:0,0:118,150
18	65174965	.	T	C	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||CTD-2541J13.2|antisense|NON_CODING|ENST00000581951|1|1),INTRON(MODIFIER|||||CTD-2541J13.2|antisense|NON_CODING|ENST00000583493|1|1),UTR_3_PRIME(MODIFIER||||1222|DSEL|protein_coding|CODING|ENST00000310045|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:0:0:0:0,0:0,0:0,0:34,34	76:2:0:0:0,0:8,8:1,1:65,67
18	66686990	.	G	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||513|CCDC102B|protein_coding|CODING|ENST00000319445|7|1),INTRON(MODIFIER||||513|CCDC102B|protein_coding|CODING|ENST00000360242|7|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:0:0:0:0,0:0,0:34,34:0,0	76:1:0:0:4,4:0,0:71,72:0,0
18	66951780	.	A	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:2:0:0:31,33:0,0:0,0:0,0	78:1:0:0:72,74:5,5:0,0:0,0
18	68006472	.	G	A	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||65|RP11-41O4.1|protein_coding|CODING|ENST00000584919|3|1),INTRON(MODIFIER|||||RP11-41O4.1|processed_transcript|CODING|ENST00000583247|1|1),UPSTREAM(MODIFIER|||||RP11-484N16.1|lincRNA|NON_CODING|ENST00000578633||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:0:0:0:0,0:0,0:37,37:0,0	67:0:0:0:9,9:0,0:58,58:0,0
18	68584404	.	G	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:1:0:0:0,0:0,0:31,32:0,0	74:0:0:0:8,8:0,0:66,66:0,0
18	68854003	.	G	C	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:2:0:0:1,1:0,0:35,37:0,0	73:1:0:0:0,0:9,10:63,64:0,0
18	69152891	.	T	A	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:0:0:0:0,0:0,0:0,0:33,33	80:1:0:0:7,7:0,0:0,0:72,73
18	69672890	.	C	G	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:0:0:0:0,0:38,38:0,0:0,0	69:0:0:0:0,0:59,59:10,10:0,0
18	71493877	.	G	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	28:0:0:0:0,0:0,0:28,28:0,0	84:1:0:0:0,0:0,0:78,78:5,6
18	74638643	.	G	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1845|ZNF236|protein_coding|CODING|ENST00000253159|22|1),INTRON(MODIFIER||||1847|ZNF236|protein_coding|CODING|ENST00000320610|22|1),INTRON(MODIFIER|||||ZNF236|nonsense_mediated_decay|CODING|ENST00000543926|22|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:0:0:0:0,0:0,1:31,47:0,0	70:4:0:0:0,0:5,8:61,92:0,0
18	74638665	rs200989164	G	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1845|ZNF236|protein_coding|CODING|ENST00000253159|22|1),INTRON(MODIFIER||||1847|ZNF236|protein_coding|CODING|ENST00000320610|22|1),INTRON(MODIFIER|||||ZNF236|nonsense_mediated_decay|CODING|ENST00000543926|22|1);RSPOS=74638665;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000080005000002000100;WGT=1;VC=SNV;INT;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:2:0:0:0,2:0,0:33,57:0,0	73:10:0:0:4,17:0,0:59,95:0,0
18	74964855	.	C	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||349|GALR1|protein_coding|CODING|ENST00000299727|1|1),UPSTREAM(MODIFIER|||||GALR1|processed_transcript|CODING|ENST00000582943||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	58:19:2:0:0,0:39,157:0,0:0,5	138:35:4:0:0,1:95,269:0,1:8,24
18	75231098	.	C	G	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-176N18.2|lincRNA|NON_CODING|ENST00000583629|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:0:0:0:0,0:35,35:0,0:0,0	81:1:0:0:0,1:75,76:5,5:0,0
18	75894380	.	A	G	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||RP11-100K18.1|lincRNA|NON_CODING|ENST00000577382||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	43:1:0:0:42,42:0,0:0,1:0,0	58:3:0:0:47,48:0,0:8,11:0,0
18	76189574	rs7242398	T	A	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=76189574;dbSNPBuildID=116;SSR=0;SAO=0;VP=050000000005040102000100;WGT=1;VC=SNV;ASP;VLD;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:2:0:0:0,0:0,0:1,1:37,39	101:5:0:0:11,15:0,1:0,0:85,88
18	76234733	.	A	G	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	45:2:0:0:43,45:0,0:0,0:0,0	77:3:0:0:67,71:1,2:6,6:0,0
18	76239603	rs62094114	G	A	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||RP11-451L19.1|lincRNA|NON_CODING|ENST00000579769||1);RSPOS=76239603;GMAF=0.022;dbSNPBuildID=129;SSR=0;SAO=0;VP=050000000001040116000100;WGT=1;VC=SNV;VLD;GNO;KGPhase1;KGPROD;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:2:0:0:1,2:0,0:32,33:0,1	57:1:0:0:11,12:0,0:45,47:0,0
18	76245230	.	T	G	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||RP11-451L19.1|lincRNA|NON_CODING|ENST00000579769||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:3:0:0:0,0:0,1:0,0:33,36	69:7:0:0:1,1:0,0:7,10:54,59
18	76343364	.	A	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:0:0:0:38,39:0,0:1,1:0,0	76:2:0:0:66,68:0,1:7,7:1,1
18	76344720	.	G	A	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	45:0:0:0:0,0:3,3:42,43:0,0	100:0:0:0:5,5:1,1:94,94:0,0
18	76439178	.	C	A	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:0:0:0:0,0:37,37:0,0:0,0	77:1:0:0:4,4:72,73:0,0:0,0
18	76611499	rs79613519	T	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=76611499;dbSNPBuildID=131;SSR=0;SAO=0;VP=050000000001000102000100;WGT=1;VC=SNV;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:1:0:0:0,0:0,1:1,1:37,39	78:0:0:0:1,1:0,0:12,12:65,69
18	77234380	.	A	G	.	PASS	NT=ref;QSS=23;QSS_NT=23;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||353|NFATC1|protein_coding|CODING|ENST00000397790|7|1),INTRON(MODIFIER||||471|NFATC1|protein_coding|CODING|ENST00000545796|7|1),INTRON(MODIFIER||||700|NFATC1|protein_coding|CODING|ENST00000586434|8|1),INTRON(MODIFIER||||713|NFATC1|protein_coding|CODING|ENST00000542384|8|1),INTRON(MODIFIER||||812|NFATC1|protein_coding|CODING|ENST00000318065|8|1),INTRON(MODIFIER||||825|NFATC1|protein_coding|CODING|ENST00000253506|8|1),INTRON(MODIFIER||||930|NFATC1|protein_coding|CODING|ENST00000329101|8|1),INTRON(MODIFIER||||943|NFATC1|protein_coding|CODING|ENST00000427363|8|1),INTRON(MODIFIER|||||NFATC1|nonsense_mediated_decay|CODING|ENST00000590313|7|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	41:2:0:0:39,43:0,0:0,0:0,0	56:3:0:0:45,48:0,0:8,8:0,0
18	77243573	.	G	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER||||353|NFATC1|protein_coding|CODING|ENST00000397790|7|1),INTRON(MODIFIER||||471|NFATC1|protein_coding|CODING|ENST00000545796|7|1),INTRON(MODIFIER||||700|NFATC1|protein_coding|CODING|ENST00000586434|8|1),INTRON(MODIFIER||||713|NFATC1|protein_coding|CODING|ENST00000542384|8|1),INTRON(MODIFIER||||812|NFATC1|protein_coding|CODING|ENST00000318065|8|1),INTRON(MODIFIER||||825|NFATC1|protein_coding|CODING|ENST00000253506|8|1),INTRON(MODIFIER||||930|NFATC1|protein_coding|CODING|ENST00000329101|8|1),INTRON(MODIFIER||||943|NFATC1|protein_coding|CODING|ENST00000427363|8|1),INTRON(MODIFIER|||||NFATC1|nonsense_mediated_decay|CODING|ENST00000590313|7|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:4:0:0:0,0:0,1:36,41:0,0	37:5:0:0:4,4:0,1:28,34:0,1
18	77252692	.	G	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||353|NFATC1|protein_coding|CODING|ENST00000397790|8|1),INTRON(MODIFIER||||471|NFATC1|protein_coding|CODING|ENST00000545796|8|1),INTRON(MODIFIER||||700|NFATC1|protein_coding|CODING|ENST00000586434|8|1),INTRON(MODIFIER||||713|NFATC1|protein_coding|CODING|ENST00000542384|8|1),INTRON(MODIFIER||||812|NFATC1|protein_coding|CODING|ENST00000318065|9|1),INTRON(MODIFIER||||825|NFATC1|protein_coding|CODING|ENST00000253506|9|1),INTRON(MODIFIER||||930|NFATC1|protein_coding|CODING|ENST00000329101|9|1),INTRON(MODIFIER||||943|NFATC1|protein_coding|CODING|ENST00000427363|9|1),INTRON(MODIFIER|||||NFATC1|nonsense_mediated_decay|CODING|ENST00000590313|8|1),UPSTREAM(MODIFIER|||||NFATC1|processed_transcript|CODING|ENST00000590861||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:3:0:0:0,0:0,0:30,33:0,0	51:8:0:0:4,4:0,0:39,46:0,1
18	77254951	rs113864179	G	C	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||353|NFATC1|protein_coding|CODING|ENST00000397790|8|1),INTRON(MODIFIER||||471|NFATC1|protein_coding|CODING|ENST00000545796|8|1),INTRON(MODIFIER||||700|NFATC1|protein_coding|CODING|ENST00000586434|8|1),INTRON(MODIFIER||||713|NFATC1|protein_coding|CODING|ENST00000542384|8|1),INTRON(MODIFIER||||812|NFATC1|protein_coding|CODING|ENST00000318065|9|1),INTRON(MODIFIER||||825|NFATC1|protein_coding|CODING|ENST00000253506|9|1),INTRON(MODIFIER||||930|NFATC1|protein_coding|CODING|ENST00000329101|9|1),INTRON(MODIFIER||||943|NFATC1|protein_coding|CODING|ENST00000427363|9|1),INTRON(MODIFIER|||||NFATC1|nonsense_mediated_decay|CODING|ENST00000590313|8|1),INTRON(MODIFIER|||||NFATC1|processed_transcript|CODING|ENST00000590861|1|1);RSPOS=77254951;dbSNPBuildID=132;SSR=0;SAO=0;VP=050000080001000102000100;GENEINFO=NFATC1:4772;WGT=1;VC=SNV;INT;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:2:0:0:0,0:2,2:35,41:0,0	78:2:0:0:0,1:15,16:61,70:0,0
18	77378900	.	G	T	.	PASS	NT=ref;QSS=27;QSS_NT=27;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	57:3:0:0:0,0:0,0:54,125:0,2	132:5:0:0:0,0:0,0:115,268:12,15
18	77379429	rs113134643	A	C	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=77379429;dbSNPBuildID=132;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	54:4:0:0:49,108:1,7:0,2:0,1	104:4:0:0:85,210:13,28:2,3:0,0
18	77382919	rs28499243	G	A	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=77382919;GMAF=0.2408;dbSNPBuildID=125;SSR=0;SAO=0;VP=050100000005040116000100;WGT=1;VC=SNV;SLO;ASP;VLD;GNO;KGPhase1;KGPROD;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	45:2:0:0:0,0:0,0:43,45:0,0	84:1:0:0:8,9:0,0:74,82:1,1
18	77454521	.	G	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||77|CTDP1|protein_coding|CODING|ENST00000590635|2|1),INTRON(MODIFIER||||799|CTDP1|protein_coding|CODING|ENST00000591598|1|1),INTRON(MODIFIER||||867|CTDP1|protein_coding|CODING|ENST00000075430|1|1),INTRON(MODIFIER||||961|CTDP1|protein_coding|CODING|ENST00000299543|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:5:0:0:0,0:0,0:30,35:0,0	54:6:0:0:5,7:0,0:43,50:0,0
18	77506394	rs73482259	A	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||799|CTDP1|protein_coding|CODING|ENST00000591598|11|1),INTRON(MODIFIER||||867|CTDP1|protein_coding|CODING|ENST00000075430|11|1),INTRON(MODIFIER||||961|CTDP1|protein_coding|CODING|ENST00000299543|12|1),INTRON(MODIFIER|||||CTDP1|processed_transcript|CODING|ENST00000585951|1|1),INTRON(MODIFIER|||||CTDP1|retained_intron|CODING|ENST00000590599|1|1);RSPOS=77506394;GMAF=0.0701;dbSNPBuildID=130;SSR=0;SAO=0;VP=05010008000107011e000100;GENEINFO=CTDP1:9150;WGT=1;VC=SNV;SLO;INT;VLD;G5A;G5;GNO;KGPhase1;KGPilot123;KGPROD;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	46:1:0:0:43,46:1,1:1,1:0,0	98:5:0:0:78,84:2,2:13,14:0,1
18	77555172	rs113238977	C	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||RP11-154H12.2|lincRNA|NON_CODING|ENST00000587174||1),INTRON(MODIFIER|||||RP11-154H12.3|lincRNA|NON_CODING|ENST00000592499|1|1);RSPOS=77555172;dbSNPBuildID=132;SSR=0;SAO=0;VP=050000000001000102000100;WGT=1;VC=SNV;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:1:0:0:0,0:31,32:0,0:0,0	81:2:0:0:1,1:71,74:0,0:7,7
18	77718372	.	T	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:0:0:0:1,1:0,0:1,1:29,29	87:1:0:0:0,0:6,6:0,0:80,81
18	77984047	rs59155306	T	G	.	PASS	NT=ref;QSS=23;QSS_NT=23;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||107|PARD6G|protein_coding|CODING|ENST00000470488|1|1),INTRON(MODIFIER||||376|PARD6G|protein_coding|CODING|ENST00000353265|1|1);RSPOS=77984047;dbSNPBuildID=129;SSR=0;SAO=0;VP=050000080001000002000100;GENEINFO=PARD6G:84552;WGT=1;VC=SNV;INT;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	18:0:0:0:0,0:0,0:0,0:18,18	42:2:0:0:0,0:0,0:13,13:27,31
19	304076	rs199566947	T	A	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||545|MIER2|protein_coding|CODING|ENST00000264819||1),INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||CTD-3113P16.5|antisense|NON_CODING|ENST00000589092||1),UPSTREAM(MODIFIER|||||CTD-3113P16.5|antisense|NON_CODING|ENST00000591533||1);RSPOS=304076;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:1:0:0:0,1:2,2:0,0:32,35	62:7:0:0:8,12:2,4:0,0:45,48
19	458376	.	C	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||289|ODF3L2|protein_coding|CODING|ENST00000315489||1),INTRON(MODIFIER||||582|SHC2|protein_coding|CODING|ENST00000264554|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:4:0:0:0,0:27,32:0,0:0,0	44:5:0:0:0,0:33,38:1,2:5,5
19	545639	rs28666917	G	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||236|CDC34|protein_coding|CODING|ENST00000215574||1),DOWNSTREAM(MODIFIER|||||CDC34|processed_transcript|CODING|ENST00000593036||1),DOWNSTREAM(MODIFIER|||||CDC34|retained_intron|CODING|ENST00000586283||1),INTRON(MODIFIER||||257|GZMM|protein_coding|CODING|ENST00000264553|1|1),INTRON(MODIFIER|||||GZMM|processed_transcript|CODING|ENST00000592501|1|1);RSPOS=545639;GMAF=0.0765;dbSNPBuildID=125;SSR=0;SAO=0;VP=050000080009040116000100;GENEINFO=GZMM:3004;WGT=1;VC=SNV;INT;CFL;VLD;GNO;KGPhase1;KGPROD;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:1:0:0:0,0:1,1:28,31:0,0	59:3:0:0:8,8:0,0:48,53:0,0
19	558143	.	C	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:1:0:0:0,0:34,34:0,1:0,0	67:3:0:0:1,1:56,60:0,0:7,8
19	558174	.	A	G	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:1:0:0:33,34:0,0:0,0:0,0	58:0:0:0:50,53:0,0:8,8:0,0
19	606752	.	T	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||889|HCN2|protein_coding|CODING|ENST00000251287|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:2:0:0:0,0:0,0:0,1:28,30	71:0:0:0:0,0:8,8:0,0:63,66
19	667353	rs74358933	C	T	.	PASS	NT=ref;QSS=24;QSS_NT=24;SGT=CC->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=EXON(MODIFIER|||||AC004156.3|lincRNA|NON_CODING|ENST00000591866|2|1),UPSTREAM(MODIFIER||||164|RNF126|protein_coding|CODING|ENST00000589762||1),UPSTREAM(MODIFIER||||311|RNF126|protein_coding|CODING|ENST00000292363||1),UPSTREAM(MODIFIER|||||RNF126|retained_intron|CODING|ENST00000591356||1),UPSTREAM(MODIFIER|||||RNF126|retained_intron|CODING|ENST00000591394||1),UPSTREAM(MODIFIER|||||RNF126|retained_intron|CODING|ENST00000592626||1);RSPOS=667353;dbSNPBuildID=131;SSR=0;SAO=0;VP=050000000001040102000100;WGT=1;VC=SNV;VLD;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	27:3:0:0:0,1:24,29:0,0:0,1	43:6:0:0:0,0:23,32:1,2:13,13
19	682393	.	A	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||283|PRSS57|protein_coding|CODING|ENST00000329267||1),DOWNSTREAM(MODIFIER|||||FSTL3|nonsense_mediated_decay|CODING|ENST00000588773||1),DOWNSTREAM(MODIFIER|||||FSTL3|processed_transcript|CODING|ENST00000591573||1),DOWNSTREAM(MODIFIER|||||FSTL3|processed_transcript|CODING|ENST00000592947||1),DOWNSTREAM(MODIFIER|||||FSTL3|retained_intron|CODING|ENST00000589185||1),UTR_3_PRIME(MODIFIER||||263|FSTL3|protein_coding|CODING|ENST00000166139|5|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:3:0:0:31,35:0,1:0,1:0,0	77:1:0:0:69,72:0,1:2,2:5,7
19	688660	.	A	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER||||283|PRSS57|protein_coding|CODING|ENST00000329267|3|1),UPSTREAM(MODIFIER|||||RPS2P52|processed_pseudogene|NON_CODING|ENST00000469610||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	28:0:0:0:28,31:0,0:0,0:0,0	45:4:0:0:31,34:2,3:8,8:0,0
19	731502	.	A	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||PALM|processed_transcript|CODING|ENST00000586776||1),DOWNSTREAM(MODIFIER|||||PALM|retained_intron|CODING|ENST00000587219||1),INTRON(MODIFIER||||343|PALM|protein_coding|CODING|ENST00000264560|5|1),INTRON(MODIFIER||||387|PALM|protein_coding|CODING|ENST00000338448|5|1),INTRON(MODIFIER|||||PALM|processed_transcript|CODING|ENST00000593172|2|1),INTRON(MODIFIER|||||PALM|retained_intron|CODING|ENST00000589012|4|1),INTRON(MODIFIER|||||PALM|retained_intron|CODING|ENST00000592870|5|1),UPSTREAM(MODIFIER|||||PALM|processed_transcript|CODING|ENST00000587513||1),UPSTREAM(MODIFIER|||||PALM|processed_transcript|CODING|ENST00000590161||1),UPSTREAM(MODIFIER|||||PALM|processed_transcript|CODING|ENST00000592155||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:0:0:0:31,32:0,0:0,0:1,1	69:0:0:0:64,66:0,0:5,5:0,0
19	759085	.	A	G	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||679|C19orf21|protein_coding|CODING|ENST00000215582|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:1:0:0:36,38:0,0:0,0:0,0	92:3:0:0:83,85:0,0:5,7:1,1
19	1210635	.	A	G	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||152|STK11|protein_coding|CODING|ENST00000585851|1|1),INTRON(MODIFIER||||433|STK11|protein_coding|CODING|ENST00000326873|1|1),INTRON(MODIFIER|||||STK11|nonsense_mediated_decay|CODING|ENST00000593219|1|1),INTRON(MODIFIER|||||STK11|processed_transcript|CODING|ENST00000585748|1|1),INTRON(MODIFIER|||||STK11|retained_intron|CODING|ENST00000586358|1|1),INTRON(MODIFIER|||||STK11|retained_intron|CODING|ENST00000589152|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:0:0:0:33,33:0,0:0,0:0,0	97:0:0:0:84,84:0,0:13,13:0,0
19	1550037	.	A	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||651|MEX3D|protein_coding|CODING|ENST00000402693||1),DOWNSTREAM(MODIFIER||||666|MEX3D|protein_coding|CODING|ENST00000388824||1),DOWNSTREAM(MODIFIER|||||AC027307.2|miRNA|NON_CODING|ENST00000581992||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:4:0:0:26,57:1,2:0,1:0,0	58:4:0:0:46,74:1,5:7,7:0,0
19	1769077	.	A	G	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||494|ONECUT3|protein_coding|CODING|ENST00000382349|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	26:1:0:0:25,26:0,0:0,0:0,0	57:5:1:0:43,48:0,0:9,11:0,0
19	1792360	.	T	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1263|ATP8B3|protein_coding|CODING|ENST00000525591|18|1),INTRON(MODIFIER||||1300|ATP8B3|protein_coding|CODING|ENST00000310127|18|1),INTRON(MODIFIER||||1310|ATP8B3|protein_coding|CODING|ENST00000539485|18|1),INTRON(MODIFIER|||||ATP8B3|nonsense_mediated_decay|CODING|ENST00000531925|18|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	27:3:0:0:0,0:0,0:0,0:24,27	64:0:0:0:0,0:8,8:0,0:56,56
19	2298086	.	T	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||592|LINGO3|protein_coding|CODING|ENST00000404279|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:1:0:0:0,0:0,0:0,0:31,32	71:0:0:0:0,0:8,8:0,0:63,64
19	2350441	.	C	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||AC005258.3|antisense|NON_CODING|ENST00000590001|1|1),INTRON(MODIFIER|||||SPPL2B|processed_transcript|NON_CODING|ENST00000452401|14|1),INTRON(MODIFIER|||||SPPL2B|processed_transcript|NON_CODING|ENST00000586377|13|1),INTRON(MODIFIER|||||SPPL2B|processed_transcript|NON_CODING|ENST00000592845|13|1),INTRON(MODIFIER|||||SPPL2B|retained_intron|NON_CODING|ENST00000589515|5|1),INTRON(MODIFIER|||||SPPL2B|retained_intron|NON_CODING|ENST00000590295|8|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:1:0:0:0,0:33,35:0,0:0,0	53:2:0:0:0,0:47,51:0,0:4,4
19	3563456	.	G	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||AC005786.3|processed_pseudogene|NON_CODING|ENST00000588553||1),DOWNSTREAM(MODIFIER|||||AC005786.5|lincRNA|NON_CODING|ENST00000592368||1),INTRON(MODIFIER||||146|MFSD12|protein_coding|CODING|ENST00000592652|2|1),INTRON(MODIFIER|||||MFSD12|nonsense_mediated_decay|CODING|ENST00000585814|1|1),INTRON(MODIFIER|||||MFSD12|nonsense_mediated_decay|CODING|ENST00000588626|3|1),INTRON(MODIFIER|||||MFSD12|processed_transcript|CODING|ENST00000591878|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:1:0:0:0,0:1,1:37,38:0,0	77:1:0:0:0,0:5,5:71,73:0,0
19	3563460	.	T	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||AC005786.3|processed_pseudogene|NON_CODING|ENST00000588553||1),DOWNSTREAM(MODIFIER|||||AC005786.5|lincRNA|NON_CODING|ENST00000592368||1),INTRON(MODIFIER||||146|MFSD12|protein_coding|CODING|ENST00000592652|2|1),INTRON(MODIFIER|||||MFSD12|nonsense_mediated_decay|CODING|ENST00000585814|1|1),INTRON(MODIFIER|||||MFSD12|nonsense_mediated_decay|CODING|ENST00000588626|3|1),INTRON(MODIFIER|||||MFSD12|processed_transcript|CODING|ENST00000591878|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:1:0:0:0,1:1,1:0,0:37,37	77:1:0:0:0,0:5,5:1,1:70,72
19	4005127	.	C	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER||||510|PIAS4|protein_coding|CODING|ENST00000262971||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:1:0:0:0,0:28,30:0,0:0,1	58:0:0:0:0,0:54,54:0,0:4,13
19	4056933	.	A	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||584|ZBTB7A|protein_coding|CODING|ENST00000322357|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:1:0:0:30,32:0,0:0,0:0,0	68:4:0:0:59,62:0,0:5,6:0,0
19	4123577	rs186641228	C	T	.	PASS	NT=ref;QSS=20;QSS_NT=19;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||303|MAP2K2|protein_coding|CODING|ENST00000394867|2|1),INTRON(MODIFIER||||400|MAP2K2|protein_coding|CODING|ENST00000262948|1|1);RSPOS=4123577;GMAF=0.2248;dbSNPBuildID=135;SSR=0;SAO=0;VP=050000080005000014000100;GENEINFO=MAP2K2:5605;WGT=1;VC=SNV;INT;ASP;KGPhase1;KGPROD	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	19:0:0:0:0,0:17,17:2,2:0,0	41:4:0:0:0,0:27,32:1,2:9,10
19	4225219	.	T	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||1146|ANKRD24|protein_coding|CODING|ENST00000318934||1),DOWNSTREAM(MODIFIER||||1236|ANKRD24|protein_coding|CODING|ENST00000262970||1),INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER||||229|EBI3|protein_coding|CODING|ENST00000221847||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	23:1:0:0:0,0:0,0:0,0:22,23	53:1:0:0:7,7:1,1:0,0:44,46
19	4300189	.	T	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||282|TMIGD2|protein_coding|CODING|ENST00000301272|1|1),UPSTREAM(MODIFIER||||496|FSD1|protein_coding|CODING|ENST00000221856||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:2:0:0:0,0:0,0:1,1:32,35	66:0:0:0:1,1:8,9:0,0:57,61
19	4728231	.	C	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER||||892|DPP9|protein_coding|CODING|ENST00000262960||1),UPSTREAM(MODIFIER|||||AC005783.1|miRNA|NON_CODING|ENST00000579411||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:1:0:0:0,0:35,36:0,0:0,0	69:3:0:0:4,5:62,65:0,0:0,0
19	4734746	.	G	A	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:2:0:0:0,0:0,0:34,36:0,0	95:2:0:0:6,6:0,0:87,89:0,0
19	4734755	.	G	A	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:2:0:0:0,0:0,0:37,39:0,0	95:2:0:0:7,7:0,0:86,88:0,0
19	4812773	.	C	G	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||712|TICAM1|protein_coding|CODING|ENST00000248244||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:0:0:0:0,0:31,32:0,0:0,0	74:1:0:0:0,0:63,64:10,12:0,0
19	4812788	.	A	G	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||712|TICAM1|protein_coding|CODING|ENST00000248244||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:2:0:0:31,34:0,0:0,0:0,0	78:1:0:0:64,65:1,1:12,14:0,0
19	4843266	.	C	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||CTC-518P12.6|antisense|NON_CODING|ENST00000591657||1),INTRON(MODIFIER||||422|PLIN3|protein_coding|CODING|ENST00000592528|7|1),INTRON(MODIFIER||||433|PLIN3|protein_coding|CODING|ENST00000585479|7|1),INTRON(MODIFIER||||434|PLIN3|protein_coding|CODING|ENST00000221957|7|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:1:0:0:0,0:29,31:0,0:0,0	76:1:0:0:6,6:69,70:0,0:0,0
19	5041223	.	G	A	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||119|KDM4B|protein_coding|CODING|ENST00000588337||1),SYNONYMOUS_CODING(LOW|SILENT|ccG/ccA|P131|1096|KDM4B|protein_coding|CODING|ENST00000159111|5|1),SYNONYMOUS_CODING(LOW|SILENT|ccG/ccA|P131|1130|KDM4B|protein_coding|CODING|ENST00000536461|4|1),SYNONYMOUS_CODING(LOW|SILENT|ccG/ccA|P131|448|KDM4B|protein_coding|CODING|ENST00000381759|5|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:0:0:0:0,0:0,0:35,35:0,0	89:2:0:0:6,6:0,0:81,83:0,0
19	5550988	.	G	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:0:0:0:0,0:0,1:32,32:0,0	67:0:0:0:0,0:7,12:60,61:0,0
19	5551013	.	C	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:1:0:0:0,0:30,31:0,0:0,1	71:2:0:0:0,0:62,65:0,0:7,11
19	6437769	.	A	G	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||229|SLC25A23|protein_coding|CODING|ENST00000414491||1),DOWNSTREAM(MODIFIER||||468|SLC25A23|protein_coding|CODING|ENST00000301454||1),INTRON(MODIFIER||||482|SLC25A23|protein_coding|CODING|ENST00000264088|12|1),UPSTREAM(MODIFIER||||242|SLC25A41|protein_coding|CODING|ENST00000458275||1),UPSTREAM(MODIFIER||||370|SLC25A41|protein_coding|CODING|ENST00000321510||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:0:0:0:34,34:0,0:0,0:0,0	60:4:0:0:50,54:0,0:6,6:0,0
19	6469321	.	C	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->CG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=DOWNSTREAM(MODIFIER||||120|CRB3|protein_coding|CODING|ENST00000308243||1),DOWNSTREAM(MODIFIER||||123|CRB3|protein_coding|CODING|ENST00000356762||1),INTRON(MODIFIER||||757|DENND1C|protein_coding|CODING|ENST00000543576|17|1),INTRON(MODIFIER||||801|DENND1C|protein_coding|CODING|ENST00000381480|19|1),INTRON(MODIFIER|||||DENND1C|nonsense_mediated_decay|CODING|ENST00000590867|17|1),INTRON(MODIFIER|||||DENND1C|retained_intron|CODING|ENST00000590444|7|1),INTRON(MODIFIER|||||DENND1C|retained_intron|CODING|ENST00000590818|8|1),INTRON(MODIFIER|||||DENND1C|retained_intron|CODING|ENST00000591795|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	46:1:0:0:1,1:44,45:0,0:0,0	58:0:0:0:0,0:54,55:4,4:0,0
19	6493474	.	T	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||444|TUBB4A|protein_coding|CODING|ENST00000264071||1),DOWNSTREAM(MODIFIER||||444|TUBB4A|protein_coding|CODING|ENST00000540257||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	24:0:0:0:0,0:0,0:0,0:24,27	47:3:0:0:0,0:7,9:0,0:37,38
19	6643173	.	A	G	.	PASS	NT=ref;QSS=23;QSS_NT=23;SGT=AA->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	21:0:0:0:21,21:0,0:0,0:0,0	33:3:0:0:22,25:0,0:8,8:0,0
19	6643182	.	C	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	21:0:0:0:0,0:21,21:0,0:0,0	34:3:0:0:0,0:25,28:0,0:6,6
19	6643187	.	G	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	22:0:0:0:0,0:0,0:22,22:0,0	35:2:0:0:6,6:0,0:27,30:0,0
19	8037834	.	T	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||326|ELAVL1|protein_coding|CODING|ENST00000407627|4|1),INTRON(MODIFIER||||353|ELAVL1|protein_coding|CODING|ENST00000351593|4|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:0:0:0:0,0:0,0:0,0:29,29	71:1:0:0:0,0:5,5:0,0:65,66
19	8068010	.	A	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||326|ELAVL1|protein_coding|CODING|ENST00000407627|1|1),UPSTREAM(MODIFIER||||353|ELAVL1|protein_coding|CODING|ENST00000351593||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:0:0:0:29,29:0,0:0,0:0,0	60:1:0:0:53,53:0,0:6,8:0,0
19	8236041	.	T	C	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	41:0:0:0:0,0:0,0:2,2:39,41	74:1:0:0:0,0:7,8:0,0:66,69
19	8245410	rs9676366	A	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=8245410;GMAF=0.1973;dbSNPBuildID=119;SSR=0;SAO=0;VP=050000000005000116000100;WGT=1;VC=SNV;ASP;GNO;KGPhase1;KGPROD;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:0:0:0:34,34:0,0:0,0:0,0	64:0:0:0:60,60:4,4:0,0:0,0
19	8943275	.	T	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=TT->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:1:0:0:0,0:0,0:1,1:38,39	71:3:0:0:0,0:4,4:0,0:64,68
19	9593964	.	T	G	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||790|ZNF560|protein_coding|CODING|ENST00000301480|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:1:0:0:1,1:0,0:0,0:34,36	80:6:0:0:1,1:2,4:6,7:65,69
19	9916397	.	A	G	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||326|FBXL12|protein_coding|CODING|ENST00000247977||1),DOWNSTREAM(MODIFIER||||47|FBXL12|protein_coding|CODING|ENST00000588922||1),DOWNSTREAM(MODIFIER||||55|FBXL12|protein_coding|CODING|ENST00000589626||1),DOWNSTREAM(MODIFIER||||85|FBXL12|protein_coding|CODING|ENST00000586651||1),DOWNSTREAM(MODIFIER|||||CTD-2623N2.5|lincRNA|NON_CODING|ENST00000590046||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:1:0:0:31,33:0,0:0,0:0,0	74:2:0:0:64,65:0,1:8,8:0,0
19	10447653	.	T	G	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=TT->GT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=DOWNSTREAM(MODIFIER||||22|ICAM3|protein_coding|CODING|ENST00000589580||1),INTRON(MODIFIER||||131|ICAM3|protein_coding|CODING|ENST00000590569|3|1),INTRON(MODIFIER||||39|ICAM3|protein_coding|CODING|ENST00000589249|3|1),INTRON(MODIFIER||||470|ICAM3|protein_coding|CODING|ENST00000589261|2|1),INTRON(MODIFIER||||547|ICAM3|protein_coding|CODING|ENST00000160262|2|1),INTRON(MODIFIER|||||ICAM3|nonsense_mediated_decay|CODING|ENST00000585439|2|1),INTRON(MODIFIER|||||ICAM3|retained_intron|CODING|ENST00000587992|2|1),INTRON(MODIFIER|||||ICAM3|retained_intron|CODING|ENST00000589900|2|1),UPSTREAM(MODIFIER||||192|ICAM3|protein_coding|CODING|ENST00000592945||1),UPSTREAM(MODIFIER||||300|ICAM3|protein_coding|CODING|ENST00000592439||1),UPSTREAM(MODIFIER||||756|RAVER1|protein_coding|CODING|ENST00000293677||1),UPSTREAM(MODIFIER|||||RAVER1|retained_intron|CODING|ENST00000592208||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:0:0:0:0,0:0,0:0,0:31,32	60:3:0:0:0,0:0,0:11,11:46,49
19	10462990	.	C	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||128|TYK2|protein_coding|CODING|ENST00000529739||1),DOWNSTREAM(MODIFIER|||||TYK2|retained_intron|CODING|ENST00000529412||1),DOWNSTREAM(MODIFIER|||||TYK2|retained_intron|CODING|ENST00000534228||1),INTRON(MODIFIER||||1002|TYK2|protein_coding|CODING|ENST00000524462|19|1),INTRON(MODIFIER||||1187|TYK2|protein_coding|CODING|ENST00000264818|21|1),INTRON(MODIFIER||||1187|TYK2|protein_coding|CODING|ENST00000525621|23|1),INTRON(MODIFIER||||142|TYK2|protein_coding|CODING|ENST00000530560|3|1),INTRON(MODIFIER|||||TYK2|processed_transcript|CODING|ENST00000529422|1|1),INTRON(MODIFIER|||||TYK2|processed_transcript|CODING|ENST00000592137|4|1),INTRON(MODIFIER|||||TYK2|retained_intron|CODING|ENST00000530220|1|1),UPSTREAM(MODIFIER|||||TYK2|retained_intron|CODING|ENST00000524470||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:0:0:0:0,0:34,35:0,0:0,0	89:0:0:0:0,0:84,86:0,0:5,6
19	10607306	.	T	C	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||211|KEAP1|protein_coding|CODING|ENST00000591039||1),INTRON(MODIFIER||||213|KEAP1|protein_coding|CODING|ENST00000591419|2|1),INTRON(MODIFIER||||278|KEAP1|protein_coding|CODING|ENST00000592055|2|1),INTRON(MODIFIER||||624|KEAP1|protein_coding|CODING|ENST00000171111|2|1),INTRON(MODIFIER||||624|KEAP1|protein_coding|CODING|ENST00000393623|2|1),INTRON(MODIFIER|||||KEAP1|processed_transcript|CODING|ENST00000588024|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:3:0:0:0,0:0,0:0,0:36,40	80:0:0:0:0,0:5,6:1,1:74,75
19	10632739	.	C	A	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER||||398|S1PR5|protein_coding|CODING|ENST00000333430||1),UPSTREAM(MODIFIER||||398|S1PR5|protein_coding|CODING|ENST00000439028||1),UPSTREAM(MODIFIER||||74|S1PR5|protein_coding|CODING|ENST00000590601||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:0:0:0:0,0:39,39:0,0:0,0	83:1:0:0:5,5:77,79:0,0:0,0
19	10632741	.	C	A	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=CC->AC;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER||||398|S1PR5|protein_coding|CODING|ENST00000333430||1),UPSTREAM(MODIFIER||||398|S1PR5|protein_coding|CODING|ENST00000439028||1),UPSTREAM(MODIFIER||||74|S1PR5|protein_coding|CODING|ENST00000590601||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:0:0:0:0,0:39,39:0,0:0,0	84:1:0:0:5,5:78,80:0,0:0,0
19	10674569	.	T	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||166|CDKN2D|protein_coding|CODING|ENST00000335766||1),DOWNSTREAM(MODIFIER||||166|CDKN2D|protein_coding|CODING|ENST00000393599||1),INTRON(MODIFIER||||193|KRI1|protein_coding|CODING|ENST00000539027|3|1),INTRON(MODIFIER||||705|KRI1|protein_coding|CODING|ENST00000361821|2|1),INTRON(MODIFIER||||709|KRI1|protein_coding|CODING|ENST00000312962|3|1),INTRON(MODIFIER|||||KRI1|nonsense_mediated_decay|CODING|ENST00000432197|2|1),INTRON(MODIFIER|||||KRI1|nonsense_mediated_decay|CODING|ENST00000544397|3|1),INTRON(MODIFIER|||||KRI1|nonsense_mediated_decay|CODING|ENST00000546063|2|1),INTRON(MODIFIER|||||KRI1|processed_transcript|CODING|ENST00000537964|3|1),INTRON(MODIFIER|||||KRI1|retained_intron|CODING|ENST00000478863|3|1),INTRON(MODIFIER|||||KRI1|retained_intron|CODING|ENST00000536689|2|1),UPSTREAM(MODIFIER|||||KRI1|retained_intron|CODING|ENST00000536714||1),UPSTREAM(MODIFIER|||||KRI1|retained_intron|CODING|ENST00000537363||1),UPSTREAM(MODIFIER|||||KRI1|retained_intron|CODING|ENST00000537433||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:1:0:0:0,0:0,0:0,0:32,34	61:0:0:0:0,0:5,5:0,0:56,56
19	10763249	.	A	G	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=EXON(MODIFIER|||||ILF3-AS1|lincRNA|NON_CODING|ENST00000591501|1|1),UPSTREAM(MODIFIER||||160|ILF3|protein_coding|CODING|ENST00000589600||1),UPSTREAM(MODIFIER||||253|ILF3|protein_coding|CODING|ENST00000590009||1),UPSTREAM(MODIFIER||||690|ILF3|protein_coding|CODING|ENST00000420083||1),UPSTREAM(MODIFIER||||702|ILF3|protein_coding|CODING|ENST00000589998||1),UPSTREAM(MODIFIER||||706|ILF3|protein_coding|CODING|ENST00000407004||1),UPSTREAM(MODIFIER||||76|ILF3|protein_coding|CODING|ENST00000593199||1),UPSTREAM(MODIFIER||||894|ILF3|protein_coding|CODING|ENST00000318511||1),UPSTREAM(MODIFIER||||898|ILF3|protein_coding|CODING|ENST00000449870||1),UPSTREAM(MODIFIER||||98|ILF3|protein_coding|CODING|ENST00000589283||1),UPSTREAM(MODIFIER|||||ILF3|retained_intron|CODING|ENST00000587928||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:2:0:0:34,35:0,1:0,0:0,0	37:2:0:0:30,31:0,2:5,5:0,0
19	10811277	.	A	G	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER||||403|QTRT1|protein_coding|CODING|ENST00000250237||1),UPSTREAM(MODIFIER|||||QTRT1|nonsense_mediated_decay|CODING|ENST00000421333||1),UPSTREAM(MODIFIER|||||QTRT1|processed_transcript|CODING|ENST00000585885||1),UPSTREAM(MODIFIER|||||QTRT1|retained_intron|CODING|ENST00000589488||1),UPSTREAM(MODIFIER|||||QTRT1|retained_intron|CODING|ENST00000590705||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:0:0:0:37,37:0,0:0,0:0,0	84:4:0:0:72,73:2,4:6,6:0,1
19	11417864	.	T	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||219|TSPAN16|protein_coding|CODING|ENST00000592955|4|1),INTRON(MODIFIER||||244|TSPAN16|protein_coding|CODING|ENST00000590327|5|1),INTRON(MODIFIER||||245|TSPAN16|protein_coding|CODING|ENST00000316737|5|1),INTRON(MODIFIER||||80|CTC-510F12.4|protein_coding|CODING|ENST00000585801|1|1),INTRON(MODIFIER||||80|CTC-510F12.4|protein_coding|CODING|ENST00000586356|1|1),INTRON(MODIFIER|||||TSPAN16|nonsense_mediated_decay|CODING|ENST00000337994|5|1),INTRON(MODIFIER|||||TSPAN16|nonsense_mediated_decay|CODING|ENST00000589928|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:0:0:0:0,0:0,0:0,0:30,31	76:2:0:0:0,0:6,6:0,0:68,72
19	12627156	.	G	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||641|CTD-2192J16.17|protein_coding|CODING|ENST00000428311|1|1),UPSTREAM(MODIFIER||||132|ZNF709|protein_coding|CODING|ENST00000455490||1),UPSTREAM(MODIFIER|||||ZNF709|processed_transcript|CODING|ENST00000493776||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:0:0:0:0,0:0,0:34,34:1,1	74:2:0:0:5,5:0,0:67,69:0,0
19	12852329	.	T	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||199|ASNA1|protein_coding|CODING|ENST00000586561|2|1),INTRON(MODIFIER||||348|ASNA1|protein_coding|CODING|ENST00000357332|2|1),INTRON(MODIFIER||||348|ASNA1|protein_coding|CODING|ENST00000591090|3|1),INTRON(MODIFIER|||||ASNA1|retained_intron|CODING|ENST00000590633|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:0:0:0:0,0:0,0:1,1:29,30	54:2:0:0:0,0:4,4:1,2:47,50
19	13639544	.	C	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||102|CACNA1A|protein_coding|CODING|ENST00000574974|2|1),INTRON(MODIFIER||||35|CACNA1A|protein_coding|CODING|ENST00000592864|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:0:0:0:0,0:31,31:0,0:0,0	55:0:0:0:0,0:50,50:0,0:5,5
19	13721563	rs11671320	A	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||102|CACNA1A|protein_coding|CODING|ENST00000574974|1|1);RSPOS=13721563;dbSNPBuildID=120;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:0:0:0:33,33:0,0:0,0:0,0	74:6:0:0:63,67:0,0:0,0:5,8
19	13881937	.	T	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||247|MRI1|protein_coding|CODING|ENST00000593245||1),DOWNSTREAM(MODIFIER|||||CTB-5E10.3|antisense|NON_CODING|ENST00000586297||1),DOWNSTREAM(MODIFIER|||||CTB-5E10.3|antisense|NON_CODING|ENST00000586894||1),DOWNSTREAM(MODIFIER|||||CTB-5E10.3|antisense|NON_CODING|ENST00000591826||1),DOWNSTREAM(MODIFIER|||||MRI1|retained_intron|CODING|ENST00000588526||1),DOWNSTREAM(MODIFIER|||||MRI1|retained_intron|CODING|ENST00000589290||1),DOWNSTREAM(MODIFIER|||||MRI1|retained_intron|CODING|ENST00000591688||1),INTRON(MODIFIER||||322|MRI1|protein_coding|CODING|ENST00000319545|5|1),INTRON(MODIFIER||||369|MRI1|protein_coding|CODING|ENST00000040663|5|1),UPSTREAM(MODIFIER||||56|C19orf53|protein_coding|CODING|ENST00000593274||1),UPSTREAM(MODIFIER||||80|C19orf53|protein_coding|CODING|ENST00000221576||1),UPSTREAM(MODIFIER||||99|C19orf53|protein_coding|CODING|ENST00000588234||1),UPSTREAM(MODIFIER|||||C19orf53|nonsense_mediated_decay|CODING|ENST00000588841||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:1:0:0:0,0:0,0:0,0:32,34	54:0:0:0:0,0:5,5:0,0:49,49
19	14176687	.	T	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||EEF1DP1|processed_pseudogene|NON_CODING|ENST00000585891||1),UPSTREAM(MODIFIER|||||EEF1DP1|retrotransposed|NON_CODING|ENST00000430596||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:2:0:0:0,0:0,0:0,0:33,36	69:0:0:0:0,0:6,6:0,0:63,63
19	14248183	rs62122133	T	C	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=TT->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER|||||CTB-55O6.12|antisense|NON_CODING|ENST00000588387|1|1),INTRON(MODIFIER|||||CTB-55O6.12|antisense|NON_CODING|ENST00000588658|1|1),UPSTREAM(MODIFIER||||143|ASF1B|protein_coding|CODING|ENST00000592798||1),UPSTREAM(MODIFIER||||165|ASF1B|protein_coding|CODING|ENST00000474890||1),UPSTREAM(MODIFIER||||202|ASF1B|protein_coding|CODING|ENST00000263382||1),UPSTREAM(MODIFIER|||||ASF1B|nonsense_mediated_decay|CODING|ENST00000589468||1),UPSTREAM(MODIFIER|||||ASF1B|nonsense_mediated_decay|CODING|ENST00000590835||1);RSPOS=14248183;dbSNPBuildID=129;SSR=0;SAO=0;VP=050000080001040102000100;GENEINFO=LOC100507373:100507373;WGT=1;VC=SNV;INT;VLD;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:2:0:0:0,0:0,1:1,2:26,27	62:2:0:0:0,0:14,14:0,1:46,47
19	14357026	.	T	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:1:0:0:0,0:0,0:0,0:29,30	74:2:0:0:0,1:7,7:0,1:65,66
19	15332787	.	C	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=DOWNSTREAM(MODIFIER||||360|EPHX3|protein_coding|CODING|ENST00000221730||1),DOWNSTREAM(MODIFIER||||360|EPHX3|protein_coding|CODING|ENST00000435261||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	28:0:0:0:0,0:28,28:0,0:0,0	61:1:0:0:0,0:54,56:0,0:6,6
19	15499903	.	T	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||646|AKAP8L|protein_coding|CODING|ENST00000397410|12|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:2:0:0:0,0:0,0:2,4:31,31	69:3:0:0:0,0:4,5:3,5:59,61
19	16154171	.	G	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||AC114273.1|lincRNA|NON_CODING|ENST00000588117||1),DOWNSTREAM(MODIFIER|||||AC114273.1|lincRNA|NON_CODING|ENST00000588838||1),DOWNSTREAM(MODIFIER|||||AC114273.1|processed_transcript|NON_CODING|ENST00000397365||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:6:0:0:0,0:0,0:34,40:0,1	63:7:0:0:4,6:0,0:52,57:0,0
19	16720198	.	T	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||181|CALR3|protein_coding|CODING|ENST00000409035|1|1),INTRON(MODIFIER||||600|MED26|protein_coding|CODING|ENST00000263390|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:2:0:0:0,0:0,0:0,0:28,30	78:5:0:0:0,0:4,4:1,1:68,74
19	16764593	.	T	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=EXON(MODIFIER|||||C19orf42|processed_transcript|CODING|ENST00000461364|4|1),INTRON(MODIFIER||||103|C19orf42|protein_coding|CODING|ENST00000358726|4|1),INTRON(MODIFIER||||75|C19orf42|protein_coding|CODING|ENST00000487416|4|1),INTRON(MODIFIER|||||C19orf42|nonsense_mediated_decay|CODING|ENST00000461488|5|1),INTRON(MODIFIER|||||C19orf42|nonsense_mediated_decay|CODING|ENST00000463051|5|1),INTRON(MODIFIER|||||C19orf42|nonsense_mediated_decay|CODING|ENST00000465250|3|1),INTRON(MODIFIER|||||C19orf42|nonsense_mediated_decay|CODING|ENST00000481671|4|1),INTRON(MODIFIER|||||C19orf42|nonsense_mediated_decay|CODING|ENST00000487803|4|1),INTRON(MODIFIER|||||C19orf42|processed_transcript|CODING|ENST00000397349|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:2:0:0:0,0:0,0:2,2:27,29	47:1:0:0:1,1:5,5:0,0:40,42
19	17754049	.	T	G	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1676|UNC13A|protein_coding|CODING|ENST00000550896|18|1),INTRON(MODIFIER||||1697|UNC13A|protein_coding|CODING|ENST00000552293|19|1),INTRON(MODIFIER||||1703|UNC13A|protein_coding|CODING|ENST00000252773|19|1),INTRON(MODIFIER||||1703|UNC13A|protein_coding|CODING|ENST00000519716|19|1),INTRON(MODIFIER||||1722|UNC13A|protein_coding|CODING|ENST00000551649|19|1),INTRON(MODIFIER||||1791|UNC13A|protein_coding|CODING|ENST00000428389|20|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:1:0:0:0,0:0,0:0,0:38,39	71:2:0:0:0,0:0,0:5,5:64,67
19	18372788	.	A	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1134|KIAA1683|protein_coding|CODING|ENST00000427634|3|1),INTRON(MODIFIER||||1180|KIAA1683|protein_coding|CODING|ENST00000359737|3|1),INTRON(MODIFIER||||1367|KIAA1683|protein_coding|CODING|ENST00000392413|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	43:0:0:0:40,40:0,0:3,3:0,0	66:2:1:0:48,48:1,1:15,17:0,1
19	18521823	rs144430019	G	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||AC008397.1|miRNA|NON_CODING|ENST00000408240||1);RSPOS=18521823;GMAF=0.0055;dbSNPBuildID=134;SSR=0;SAO=0;VP=050000000005000014000100;WGT=1;VC=SNV;ASP;KGPhase1;KGPROD	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:0:0:0:0,0:1,1:32,33:0,0	72:0:0:0:5,5:0,0:67,67:0,0
19	18641930	.	C	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||253|FKBP8|protein_coding|CODING|ENST00000544835||1),DOWNSTREAM(MODIFIER||||413|FKBP8|protein_coding|CODING|ENST00000222308||1),DOWNSTREAM(MODIFIER||||441|FKBP8|protein_coding|CODING|ENST00000453489||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:0:0:0:0,0:30,30:0,0:0,0	67:0:0:0:0,0:62,64:0,0:5,5
19	19075957	.	T	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:0:0:0:0,0:0,0:0,0:31,32	84:2:0:0:0,0:1,1:4,4:77,82
19	19108907	.	T	C	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1030|SUGP2|protein_coding|CODING|ENST00000330854|9|1),INTRON(MODIFIER||||1082|SUGP2|protein_coding|CODING|ENST00000337018|8|1),INTRON(MODIFIER||||1082|SUGP2|protein_coding|CODING|ENST00000452918|8|1),INTRON(MODIFIER||||861|SUGP2|protein_coding|CODING|ENST00000456085|8|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:1:0:0:0,0:0,0:0,0:36,37	70:0:0:0:0,0:5,5:0,0:65,65
19	19840006	.	G	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||642|ZNF14|protein_coding|CODING|ENST00000344099|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:0:0:0:1,1:0,0:34,36:0,0	78:0:0:0:1,1:5,5:72,77:0,0
19	20286961	.	C	G	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->CG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=EXON(MODIFIER|||||CTC-260E6.6|antisense|NON_CODING|ENST00000585498|2|1),INTRON(MODIFIER||||463|ZNF486|protein_coding|CODING|ENST00000335117|1|1),INTRON(MODIFIER|||||CTC-260E6.6|antisense|NON_CODING|ENST00000586657|1|1),INTRON(MODIFIER|||||CTC-260E6.8|processed_pseudogene|NON_CODING|ENST00000589779|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:4:0:0:0,0:35,38:0,2:0,0	84:5:0:0:0,0:68,69:11,15:0,0
19	20308178	.	A	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||CTC-260E6.6|antisense|NON_CODING|ENST00000585498|1|1),INTRON(MODIFIER|||||CTC-260E6.6|antisense|NON_CODING|ENST00000586657|1|1),NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|aAc/aCc|N220T|463|ZNF486|protein_coding|CODING|ENST00000335117|4|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:0:0:0:38,38:0,0:0,0:0,0	91:2:0:0:84,86:5,5:0,0:0,0
19	20686034	.	T	C	.	PASS	NT=ref;QSS=25;QSS_NT=25;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	43:0:0:0:0,0:0,0:0,0:43,43	61:0:0:0:0,0:9,12:0,0:52,52
19	21601756	.	G	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||646|ZNF493|protein_coding|CODING|ENST00000355504|1|1),INTRON(MODIFIER||||774|ZNF493|protein_coding|CODING|ENST00000392288|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:0:0:0:0,0:0,0:34,34:0,0	81:0:0:0:0,0:0,0:73,73:8,8
19	22048770	.	T	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	22:3:0:0:0,0:0,1:0,0:19,29	58:7:0:0:0,0:9,14:2,2:40,61
19	22253286	.	C	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||563|ZNF257|protein_coding|CODING|ENST00000435820|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:0:0:0:1,1:31,31:0,0:0,0	88:0:0:0:0,0:83,83:0,0:5,6
19	22253294	.	C	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||563|ZNF257|protein_coding|CODING|ENST00000435820|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:0:0:0:0,0:34,34:0,0:0,0	90:1:0:0:5,6:84,85:0,0:0,0
19	22578338	rs199710505	T	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER||||572|ZNF98|protein_coding|CODING|ENST00000357774|3|1);RSPOS=22578338;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000080005000002000100;WGT=1;VC=SNV;INT;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	48:4:0:0:0,1:0,1:0,0:44,47	91:1:0:0:3,3:5,5:0,0:82,83
19	22629084	.	G	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:3:0:0:0,0:0,0:34,37:0,0	94:1:0:0:0,0:0,0:87,88:6,6
19	22925790	.	T	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:0:0:0:0,0:0,0:1,1:29,30	75:0:0:0:0,0:7,7:0,0:68,68
19	22941717	.	G	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|Cag/Aag|Q241K|1037|ZNF99|protein_coding|CODING|ENST00000397104|5|1),UPSTREAM(MODIFIER||||238|AC024563.1|protein_coding|CODING|ENST00000442497||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:1:0:0:0,0:0,0:31,33:0,0	82:0:0:0:0,0:1,1:74,75:7,7
19	23033449	.	A	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=AA->AT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:0:0:0:34,34:0,0:0,0:0,1	84:1:0:0:75,76:1,1:0,0:7,7
19	23324743	.	A	G	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||503|ZNF730|protein_coding|CODING|ENST00000327867|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:0:0:0:31,31:0,0:0,0:0,0	74:1:0:0:66,67:0,0:7,7:0,0
19	23847891	.	T	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||568|ZNF675|protein_coding|CODING|ENST00000359788|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	28:0:0:0:0,0:0,0:0,0:28,28	65:0:0:0:5,5:0,0:0,0:60,60
19	23847895	.	T	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||568|ZNF675|protein_coding|CODING|ENST00000359788|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	28:0:0:0:0,0:0,0:0,0:28,28	64:0:0:0:0,0:0,0:5,5:59,59
19	27739925	.	C	G	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	67:5:0:0:0,1:60,107:1,4:1,2	117:16:0:0:0,4:95,213:6,13:0,5
19	27756220	.	G	T	.	PASS	NT=ref;QSS=28;QSS_NT=27;SGT=GG->GT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	79:18:0:0:3,12:0,0:58,155:0,6	193:46:0:0:5,14:0,0:133,359:9,23
19	27793931	.	A	T	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	62:18:0:0:44,128:0,0:0,0:0,3	167:20:0:0:136,285:0,6:0,0:11,16
19	27796004	.	T	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:2:0:0:0,0:0,2:0,0:38,40	92:4:0:0:0,1:7,14:1,1:80,82
19	27807808	.	T	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	44:4:0:0:0,0:0,1:0,0:40,110	99:12:0:0:0,0:4,11:0,1:83,249
19	27807817	.	A	G	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	41:6:0:0:35,106:0,0:0,1:0,0	94:17:0:0:72,248:0,0:5,13:0,0
19	27854368	.	C	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	76:0:0:0:1,1:75,84:0,0:0,0	197:1:0:0:9,12:187,210:0,0:0,0
19	27973127	.	C	T	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=CC->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	50:3:0:0:0,2:47,52:0,0:0,1	90:2:0:0:1,4:80,83:0,0:7,8
19	28131021	rs201254474	C	A	.	PASS	NT=ref;QSS=31;QSS_NT=31;SGT=CC->AC;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER|||||CTB-151G24.1|lincRNA|NON_CODING|ENST00000589010|1|1);RSPOS=28131021;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:0:0:0:0,4:40,41:0,0:0,0	61:1:0:0:13,23:47,49:0,0:0,0
19	28264258	.	A	C	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||LINC00662|lincRNA|NON_CODING|ENST00000586248||1),DOWNSTREAM(MODIFIER|||||LINC00662|lincRNA|NON_CODING|ENST00000586954||1),INTRON(MODIFIER|||||LINC00662|lincRNA|NON_CODING|ENST00000588027|1|1),INTRON(MODIFIER|||||LINC00662|lincRNA|NON_CODING|ENST00000590677|1|1),UPSTREAM(MODIFIER|||||LINC00662|lincRNA|NON_CODING|ENST00000588150||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:1:0:0:37,38:0,0:0,0:0,0	78:1:0:0:72,73:5,5:0,0:0,0
19	28580489	.	A	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||CTD-2043I16.1|lincRNA|NON_CODING|ENST00000586671|1|1),INTRON(MODIFIER|||||CTD-2043I16.1|lincRNA|NON_CODING|ENST00000590229|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	28:1:0:0:27,28:0,1:0,0:0,0	86:0:0:0:75,75:0,0:0,0:11,13
19	32797101	.	T	A	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	22:0:0:0:0,0:0,0:0,0:22,25	33:0:0:0:6,6:0,0:0,0:27,31
19	32874300	.	G	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||953|ZNF507|protein_coding|CODING|ENST00000355898||1),DOWNSTREAM(MODIFIER|||||ZNF507|processed_transcript|CODING|ENST00000586664||1),UTR_3_PRIME(MODIFIER||||953|ZNF507|protein_coding|CODING|ENST00000311921|6|1),UTR_3_PRIME(MODIFIER||||957|ZNF507|protein_coding|CODING|ENST00000544431|8|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:0:0:0:0,0:0,0:32,32:0,0	75:1:0:0:4,4:0,0:70,71:0,0
19	33080733	.	A	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||111|PDCD5|protein_coding|CODING|ENST00000586316||1),DOWNSTREAM(MODIFIER||||125|PDCD5|protein_coding|CODING|ENST00000590247||1),DOWNSTREAM(MODIFIER||||129|PDCD5|protein_coding|CODING|ENST00000419343||1),DOWNSTREAM(MODIFIER||||40|PDCD5|protein_coding|CODING|ENST00000379316||1),DOWNSTREAM(MODIFIER||||65|PDCD5|protein_coding|CODING|ENST00000592786||1),DOWNSTREAM(MODIFIER||||87|PDCD5|protein_coding|CODING|ENST00000586035||1),DOWNSTREAM(MODIFIER|||||PDCD5|nonsense_mediated_decay|CODING|ENST00000221784||1),DOWNSTREAM(MODIFIER|||||PDCD5|processed_transcript|CODING|ENST00000588622||1),DOWNSTREAM(MODIFIER|||||PDCD5|retained_intron|CODING|ENST00000590025||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:0:0:0:38,40:0,0:0,0:0,0	84:0:0:0:79,79:0,0:0,0:5,5
19	33092190	.	T	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1050|ANKRD27|protein_coding|CODING|ENST00000306065|26|1),UPSTREAM(MODIFIER|||||ANKRD27|processed_transcript|CODING|ENST00000587667||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:1:0:0:0,0:0,0:1,1:31,32	62:1:0:0:0,0:8,9:1,1:52,54
19	33189288	rs199604896	G	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||375|NUDT19|protein_coding|CODING|ENST00000397061|1|1);RSPOS=33189288;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000080005000002000100;WGT=1;VC=SNV;INT;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:0:0:0:0,0:0,0:32,32:0,0	69:1:0:0:0,0:0,0:63,64:5,11
19	33556772	.	A	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER||||535|RHPN2|protein_coding|CODING|ENST00000400226||1),UPSTREAM(MODIFIER||||686|RHPN2|protein_coding|CODING|ENST00000254260||1),UPSTREAM(MODIFIER|||||CTC-461H2.3|processed_pseudogene|NON_CODING|ENST00000591021||1),UPSTREAM(MODIFIER|||||RHPN2|nonsense_mediated_decay|CODING|ENST00000588388||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:1:0:0:32,33:1,1:0,0:0,0	72:5:0:0:62,62:0,0:0,0:5,10
19	36555466	.	C	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->CG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=DOWNSTREAM(MODIFIER||||111|WDR62|protein_coding|CODING|ENST00000588157||1),INTRON(MODIFIER||||1518|WDR62|protein_coding|CODING|ENST00000270301|3|1),INTRON(MODIFIER||||1523|WDR62|protein_coding|CODING|ENST00000401500|3|1),INTRON(MODIFIER||||302|WDR62|protein_coding|CODING|ENST00000427823|4|1),INTRON(MODIFIER||||414|WDR62|protein_coding|CODING|ENST00000378860|3|1),INTRON(MODIFIER||||483|WDR62|protein_coding|CODING|ENST00000388999|3|1),INTRON(MODIFIER|||||WDR62|nonsense_mediated_decay|CODING|ENST00000587391|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:0:0:0:0,0:29,29:0,0:0,0	74:2:0:0:0,0:66,69:6,6:0,0
19	36619682	.	C	T	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||120|TBCB|protein_coding|CODING|ENST00000587017||1),DOWNSTREAM(MODIFIER||||168|TBCB|protein_coding|CODING|ENST00000588385||1),DOWNSTREAM(MODIFIER||||191|TBCB|protein_coding|CODING|ENST00000589996||1),DOWNSTREAM(MODIFIER||||193|TBCB|protein_coding|CODING|ENST00000585746||1),DOWNSTREAM(MODIFIER||||244|TBCB|protein_coding|CODING|ENST00000221855||1),DOWNSTREAM(MODIFIER||||60|TBCB|protein_coding|CODING|ENST00000586868||1),DOWNSTREAM(MODIFIER|||||TBCB|processed_transcript|CODING|ENST00000468156||1),DOWNSTREAM(MODIFIER|||||TBCB|processed_transcript|CODING|ENST00000585910||1),EXON(MODIFIER|||||AD001527.5|lincRNA|NON_CODING|ENST00000589270|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	43:0:0:0:0,0:43,43:0,0:0,0	66:1:0:0:0,1:60,61:0,0:5,5
19	36648041	.	G	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER||||59|COX7A1|protein_coding|CODING|ENST00000589154||1),UPSTREAM(MODIFIER||||79|COX7A1|protein_coding|CODING|ENST00000292907||1),UPSTREAM(MODIFIER|||||COX7A1|retained_intron|CODING|ENST00000481297||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:2:0:0:0,0:0,0:32,34:0,0	56:0:0:0:0,0:4,6:52,54:0,0
19	36658186	.	A	G	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	27:2:0:0:25,27:0,0:0,0:0,0	51:4:0:0:38,41:1,1:8,9:0,0
19	36864837	.	T	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||533|ZFP14|protein_coding|CODING|ENST00000270001|1|1),UPSTREAM(MODIFIER|||||CTD-3162L10.3|antisense|NON_CODING|ENST00000587018||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	26:0:0:0:1,1:0,0:1,1:24,24	67:2:1:0:14,15:0,0:1,1:50,52
19	37368614	.	T	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||112|ZNF345|protein_coding|CODING|ENST00000331800||1),DOWNSTREAM(MODIFIER||||183|ZNF345|protein_coding|CODING|ENST00000585396||1),DOWNSTREAM(MODIFIER||||73|ZNF345|protein_coding|CODING|ENST00000532141||1),DOWNSTREAM(MODIFIER||||93|ZNF345|protein_coding|CODING|ENST00000586646||1),INTRON(MODIFIER||||52|ZNF345|protein_coding|CODING|ENST00000586933|4|1),INTRON(MODIFIER||||75|ZNF345|protein_coding|CODING|ENST00000526123|3|1),INTRON(MODIFIER|||||ZNF345|processed_transcript|CODING|ENST00000432005|2|1),INTRON(MODIFIER|||||ZNF345|processed_transcript|CODING|ENST00000525851|1|1),INTRON(MODIFIER|||||ZNF345|processed_transcript|CODING|ENST00000529989|2|1),INTRON(MODIFIER|||||ZNF345|processed_transcript|CODING|ENST00000534729|2|1),SYNONYMOUS_CODING(LOW|SILENT|gcT/gcC|A294|488|ZNF345|protein_coding|CODING|ENST00000420450|3|1),SYNONYMOUS_CODING(LOW|SILENT|gcT/gcC|A294|488|ZNF345|protein_coding|CODING|ENST00000529555|2|1),SYNONYMOUS_CODING(LOW|SILENT|gcT/gcC|A294|488|ZNF345|protein_coding|CODING|ENST00000589046|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:0:0:0:0,0:0,0:0,0:29,29	62:0:0:0:0,0:6,6:1,1:55,56
19	37807725	.	T	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||386|HKR1|protein_coding|CODING|ENST00000591471|1|1),INTRON(MODIFIER|||||HKR1|processed_transcript|CODING|ENST00000587570|1|1),UPSTREAM(MODIFIER||||21|HKR1|protein_coding|CODING|ENST00000589188||1),UPSTREAM(MODIFIER||||36|HKR1|protein_coding|CODING|ENST00000589801||1),UPSTREAM(MODIFIER||||386|HKR1|protein_coding|CODING|ENST00000544914||1),UPSTREAM(MODIFIER|||||HKR1|processed_transcript|CODING|ENST00000587829||1),UPSTREAM(MODIFIER|||||HKR1|processed_transcript|CODING|ENST00000589218||1),UPSTREAM(MODIFIER|||||HKR1|processed_transcript|CODING|ENST00000592362||1),UPSTREAM(MODIFIER|||||HKR1|retained_intron|CODING|ENST00000591485||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:4:0:0:0,0:1,1:0,1:27,30	63:3:0:0:0,0:12,13:0,0:48,52
19	38098507	.	A	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||29|ZNF540|protein_coding|CODING|ENST00000586792|2|1),INTRON(MODIFIER||||551|ZNF540|protein_coding|CODING|ENST00000586134|5|1),INTRON(MODIFIER||||628|ZNF540|protein_coding|CODING|ENST00000589117|3|1),INTRON(MODIFIER||||660|ZNF540|protein_coding|CODING|ENST00000316433|4|1),INTRON(MODIFIER||||660|ZNF540|protein_coding|CODING|ENST00000343599|4|1),INTRON(MODIFIER||||660|ZNF540|protein_coding|CODING|ENST00000592533|4|1),INTRON(MODIFIER||||99|ZNF540|protein_coding|CODING|ENST00000590588|4|1),INTRON(MODIFIER|||||ZNF540|processed_transcript|CODING|ENST00000589857|3|1),UPSTREAM(MODIFIER|||||ZNF540|retained_intron|CODING|ENST00000589285||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:0:0:0:29,29:0,0:0,0:0,0	83:3:0:0:76,80:0,0:0,0:4,9
19	38614506	.	C	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1781|SIPA1L3|protein_coding|CODING|ENST00000222345|9|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:1:0:0:0,0:29,30:0,0:0,0	76:4:0:0:0,0:68,77:0,0:4,9
19	38650738	.	A	T	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1781|SIPA1L3|protein_coding|CODING|ENST00000222345|13|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:4:0:0:35,39:1,1:0,0:0,0	69:0:0:0:61,61:0,0:0,0:8,8
19	38650749	.	T	C	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1781|SIPA1L3|protein_coding|CODING|ENST00000222345|13|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:2:0:0:0,0:0,0:0,0:38,40	69:0:0:0:0,0:6,6:0,0:63,63
19	39079537	.	T	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||5033|RYR1|protein_coding|CODING|ENST00000355481||1),DOWNSTREAM(MODIFIER||||5033|RYR1|protein_coding|CODING|ENST00000360985||1),DOWNSTREAM(MODIFIER||||5038|RYR1|protein_coding|CODING|ENST00000359596||1),DOWNSTREAM(MODIFIER|||||MAP4K1|retained_intron|CODING|ENST00000588938||1),INTRON(MODIFIER||||395|MAP4K1|protein_coding|CODING|ENST00000586296|15|1),INTRON(MODIFIER||||817|MAP4K1|protein_coding|CODING|ENST00000589130|31|1),INTRON(MODIFIER||||821|MAP4K1|protein_coding|CODING|ENST00000396857|30|1),INTRON(MODIFIER||||833|MAP4K1|protein_coding|CODING|ENST00000591517|31|1),INTRON(MODIFIER|||||MAP4K1|processed_transcript|CODING|ENST00000593196|4|1),INTRON(MODIFIER|||||MAP4K1|retained_intron|CODING|ENST00000591210|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:1:0:0:0,0:0,0:0,0:29,32	65:0:0:0:0,0:0,0:5,5:60,61
19	39651518	.	C	G	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||438|PAK4|protein_coding|CODING|ENST00000321944|1|1),INTRON(MODIFIER||||591|PAK4|protein_coding|CODING|ENST00000358301|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:0:0:0:0,0:38,38:0,0:0,0	80:0:0:0:0,0:75,75:5,5:0,0
19	40624684	.	G	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||VN1R96P|unitary_pseudogene|NON_CODING|ENST00000446052||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:3:0:0:0,0:1,1:27,37:0,0	64:7:0:0:5,8:0,0:52,58:0,0
19	40846328	.	G	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||141|C19orf47|protein_coding|CODING|ENST00000582006|1|1),INTRON(MODIFIER||||145|C19orf47|protein_coding|CODING|ENST00000580606|2|1),INTRON(MODIFIER||||355|C19orf47|protein_coding|CODING|ENST00000392035|2|1),INTRON(MODIFIER||||422|C19orf47|protein_coding|CODING|ENST00000582783|2|1),INTRON(MODIFIER|||||C19orf47|nonsense_mediated_decay|CODING|ENST00000580977|2|1),UPSTREAM(MODIFIER|||||Y_RNA|misc_RNA|NON_CODING|ENST00000384198||1),UPSTREAM(MODIFIER|||||Y_RNA|misc_RNA|NON_CODING|ENST00000384551||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:0:0:0:0,0:0,0:31,32:0,0	74:1:0:0:5,5:0,0:68,73:0,0
19	40846330	.	C	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||141|C19orf47|protein_coding|CODING|ENST00000582006|1|1),INTRON(MODIFIER||||145|C19orf47|protein_coding|CODING|ENST00000580606|2|1),INTRON(MODIFIER||||355|C19orf47|protein_coding|CODING|ENST00000392035|2|1),INTRON(MODIFIER||||422|C19orf47|protein_coding|CODING|ENST00000582783|2|1),INTRON(MODIFIER|||||C19orf47|nonsense_mediated_decay|CODING|ENST00000580977|2|1),UPSTREAM(MODIFIER|||||Y_RNA|misc_RNA|NON_CODING|ENST00000384198||1),UPSTREAM(MODIFIER|||||Y_RNA|misc_RNA|NON_CODING|ENST00000384551||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:0:0:0:1,1:29,30:0,0:0,0	74:1:0:0:1,1:65,70:7,7:0,0
19	40881717	.	A	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||616|HIPK4|protein_coding|CODING|ENST00000291823||1),DOWNSTREAM(MODIFIER|||||PLD3|retained_intron|CODING|ENST00000475983||1),DOWNSTREAM(MODIFIER|||||PLD3|retained_intron|CODING|ENST00000480030||1),DOWNSTREAM(MODIFIER|||||PLD3|retained_intron|CODING|ENST00000492243||1),INTRON(MODIFIER||||490|PLD3|protein_coding|CODING|ENST00000356508|10|1),INTRON(MODIFIER||||490|PLD3|protein_coding|CODING|ENST00000409281|10|1),INTRON(MODIFIER||||490|PLD3|protein_coding|CODING|ENST00000409419|9|1),INTRON(MODIFIER||||490|PLD3|protein_coding|CODING|ENST00000409587|10|1),INTRON(MODIFIER||||490|PLD3|protein_coding|CODING|ENST00000409735|10|1),UPSTREAM(MODIFIER|||||PLD3|processed_transcript|CODING|ENST00000486134||1),UPSTREAM(MODIFIER|||||PLD3|retained_intron|CODING|ENST00000488311||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:0:0:0:29,29:0,0:0,0:0,0	69:1:0:0:64,66:0,0:4,4:0,0
19	41004372	.	G	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1309|SPTBN4|protein_coding|CODING|ENST00000344104|7|1),INTRON(MODIFIER||||2154|SPTBN4|protein_coding|CODING|ENST00000338932|7|1),INTRON(MODIFIER||||2564|SPTBN4|protein_coding|CODING|ENST00000352632|7|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:1:0:0:0,0:0,0:31,32:0,0	73:2:0:0:0,0:5,5:66,68:0,1
19	41004389	.	T	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1309|SPTBN4|protein_coding|CODING|ENST00000344104|7|1),INTRON(MODIFIER||||2154|SPTBN4|protein_coding|CODING|ENST00000338932|7|1),INTRON(MODIFIER||||2564|SPTBN4|protein_coding|CODING|ENST00000352632|7|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:1:0:0:0,0:0,0:0,0:31,32	68:2:0:0:5,5:0,0:0,0:61,64
19	41032347	.	G	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||1309|SPTBN4|protein_coding|CODING|ENST00000344104||1),INTRON(MODIFIER||||1307|SPTBN4|protein_coding|CODING|ENST00000392025|1|1),INTRON(MODIFIER||||2154|SPTBN4|protein_coding|CODING|ENST00000338932|17|1),INTRON(MODIFIER||||2564|SPTBN4|protein_coding|CODING|ENST00000352632|17|1),UPSTREAM(MODIFIER||||678|SPTBN4|protein_coding|CODING|ENST00000392023||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:0:0:0:0,0:0,0:30,30:0,0	81:0:0:0:0,0:6,7:75,77:0,0
19	41717964	.	G	A	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||504|CYP2S1|protein_coding|CODING|ENST00000310054||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:1:0:0:0,0:0,0:34,35:0,0	73:1:0:0:5,5:0,0:67,68:0,0
19	41753713	.	T	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||885|AXL|protein_coding|CODING|ENST00000359092|11|1),INTRON(MODIFIER||||894|AXL|protein_coding|CODING|ENST00000301178|12|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:0:0:0:0,0:0,0:0,0:33,33	69:2:0:0:0,0:5,5:0,0:62,65
19	41844493	.	T	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||390|TGFB1|protein_coding|CODING|ENST00000221930|5|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:0:0:0:0,0:0,0:1,1:31,32	71:3:0:0:0,0:6,7:0,1:62,64
19	42057261	.	T	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||165|CEACAM21|protein_coding|CODING|ENST00000407170|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:1:0:0:0,0:0,0:0,0:28,30	65:0:0:0:1,1:5,5:0,0:59,59
19	42468058	.	C	G	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||1013|ATP1A3|protein_coding|CODING|ENST00000302102||1),DOWNSTREAM(MODIFIER||||1024|ATP1A3|protein_coding|CODING|ENST00000543770||1),DOWNSTREAM(MODIFIER||||1026|ATP1A3|protein_coding|CODING|ENST00000545399||1),DOWNSTREAM(MODIFIER||||1225|ATP1A3|protein_coding|CODING|ENST00000441343||1),DOWNSTREAM(MODIFIER|||||ATP1A3|processed_transcript|CODING|ENST00000473840||1),INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER||||185|RABAC1|protein_coding|CODING|ENST00000222008||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:0:0:0:0,0:29,30:0,0:0,0	56:1:0:0:0,0:47,50:8,8:0,0
19	43292344	.	C	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||CEACAMP6|unprocessed_pseudogene|NON_CODING|ENST00000452007||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:1:0:0:0,0:28,29:0,0:0,0	75:1:0:0:0,0:69,70:0,0:5,5
19	43292346	rs202125049	C	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||CEACAMP6|unprocessed_pseudogene|NON_CODING|ENST00000452007||1);RSPOS=43292346;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:1:0:0:0,0:29,30:0,0:0,0	76:0:0:0:1,1:70,70:0,0:5,5
19	44387720	.	A	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||552|ZNF404|protein_coding|CODING|ENST00000587539|1|1),INTRON(MODIFIER|||||ZNF404|processed_transcript|CODING|ENST00000588094|3|1),UPSTREAM(MODIFIER||||550|ZNF404|protein_coding|CODING|ENST00000324394||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:0:0:0:30,30:0,0:0,0:0,0	82:0:0:0:76,76:0,0:6,6:0,0
19	44876844	rs73556961	A	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||158|CTC-512J12.6|protein_coding|CODING|ENST00000588212|2|1),INTRON(MODIFIER||||912|ZFP112|protein_coding|CODING|ENST00000253426|2|1);RSPOS=44876844;dbSNPBuildID=131;SSR=1;SAO=0;VP=050100000005040102000140;WGT=1;VC=SNV;SLO;ASP;VLD;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:0:0:0:33,33:0,0:0,0:0,0	75:1:0:0:68,69:0,0:0,0:6,10
19	45281610	.	C	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||428|CBLC|protein_coding|CODING|ENST00000341505|1|1),INTRON(MODIFIER||||474|CBLC|protein_coding|CODING|ENST00000270279|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:2:0:0:0,0:29,31:0,0:0,0	68:4:0:0:0,0:60,66:0,0:4,4
19	45622711	.	C	T	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||185|PPP1R37|protein_coding|CODING|ENST00000544069|1|1),INTRON(MODIFIER||||61|MARK4|protein_coding|CODING|ENST00000587566|1|1),INTRON(MODIFIER||||687|PPP1R37|protein_coding|CODING|ENST00000421905|1|1),INTRON(MODIFIER||||691|PPP1R37|protein_coding|CODING|ENST00000221462|1|1),INTRON(MODIFIER|||||PPP1R37|processed_transcript|CODING|ENST00000544897|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:0:0:0:0,0:37,37:0,0:0,0	79:0:0:0:0,0:70,72:0,0:9,9
19	45968489	.	G	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||225|ERCC1|protein_coding|CODING|ENST00000423698|1|1),UPSTREAM(MODIFIER||||177|FOSB|protein_coding|CODING|ENST00000590335||1),UPSTREAM(MODIFIER||||188|FOSB|protein_coding|CODING|ENST00000592811||1),UPSTREAM(MODIFIER||||195|FOSB|protein_coding|CODING|ENST00000443841||1),UPSTREAM(MODIFIER||||237|FOSB|protein_coding|CODING|ENST00000592436||1),UPSTREAM(MODIFIER||||263|FOSB|protein_coding|CODING|ENST00000585836||1),UPSTREAM(MODIFIER||||289|FOSB|protein_coding|CODING|ENST00000586615||1),UPSTREAM(MODIFIER||||299|FOSB|protein_coding|CODING|ENST00000591858||1),UPSTREAM(MODIFIER||||302|FOSB|protein_coding|CODING|ENST00000417353||1),UPSTREAM(MODIFIER||||338|FOSB|protein_coding|CODING|ENST00000353609||1),UPSTREAM(MODIFIER|||||FOSB|retained_intron|CODING|ENST00000586113||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:0:0:0:0,0:0,0:32,32:0,0	75:1:0:0:8,8:0,0:66,67:0,0
19	47186188	.	C	G	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||878|PRKD2|protein_coding|CODING|ENST00000291281|14|1),INTRON(MODIFIER||||878|PRKD2|protein_coding|CODING|ENST00000433867|15|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:0:0:0:0,0:31,31:0,0:0,0	88:0:0:0:0,0:83,83:5,5:0,0
19	47294863	.	T	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER||||313|SLC1A5|protein_coding|CODING|ENST00000412532||1),UPSTREAM(MODIFIER||||541|SLC1A5|protein_coding|CODING|ENST00000542575||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:1:0:0:0,0:0,0:0,0:32,33	74:2:0:0:0,0:5,5:1,2:66,67
19	47410956	.	C	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:1:0:0:0,0:29,30:0,0:0,0	74:1:0:0:0,0:66,67:7,7:0,0
19	47586913	.	C	G	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||Metazoa_SRP|misc_RNA|NON_CODING|ENST00000584468||1),INTRON(MODIFIER||||1303|ZC3H4|protein_coding|CODING|ENST00000253048|9|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:1:0:0:0,0:32,33:0,0:0,0	62:0:0:0:0,0:57,57:5,5:0,0
19	48380005	.	T	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||285|SULT2A1|protein_coding|CODING|ENST00000222002|4|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	25:2:0:0:0,0:0,0:0,0:23,25	55:7:0:0:0,2:6,6:4,7:38,43
19	48990046	.	A	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||400|CYTH2|protein_coding|CODING|ENST00000427476||1),INTRON(MODIFIER||||1489|LMTK3|protein_coding|CODING|ENST00000270238|15|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:1:0:0:38,39:0,0:0,0:0,0	92:5:0:0:81,84:1,1:5,8:0,0
19	49466331	.	A	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||143|BAX|protein_coding|CODING|ENST00000354470||1),DOWNSTREAM(MODIFIER||||164|BAX|protein_coding|CODING|ENST00000539787||1),DOWNSTREAM(MODIFIER||||179|BAX|protein_coding|CODING|ENST00000415969||1),DOWNSTREAM(MODIFIER||||192|BAX|protein_coding|CODING|ENST00000345358||1),DOWNSTREAM(MODIFIER||||218|BAX|protein_coding|CODING|ENST00000293288||1),DOWNSTREAM(MODIFIER||||41|BAX|protein_coding|CODING|ENST00000391871||1),DOWNSTREAM(MODIFIER|||||BAX|nonsense_mediated_decay|CODING|ENST00000356483||1),DOWNSTREAM(MODIFIER|||||BAX|processed_transcript|CODING|ENST00000507757||1),DOWNSTREAM(MODIFIER|||||BAX|retained_intron|CODING|ENST00000502487||1),DOWNSTREAM(MODIFIER|||||BAX|retained_intron|CODING|ENST00000503726||1),DOWNSTREAM(MODIFIER|||||BAX|retained_intron|CODING|ENST00000513217||1),DOWNSTREAM(MODIFIER|||||BAX|retained_intron|CODING|ENST00000513545||1),INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER||||175|FTL|protein_coding|CODING|ENST00000331825||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	17:0:0:0:16,17:0,0:0,0:1,1	39:1:0:0:30,31:8,8:0,0:0,1
19	49719216	.	A	G	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||1069|TRPM4|protein_coding|CODING|ENST00000427978||1),DOWNSTREAM(MODIFIER||||1214|TRPM4|protein_coding|CODING|ENST00000252826||1),DOWNSTREAM(MODIFIER||||860|TRPM4|protein_coding|CODING|ENST00000355712||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:1:0:0:35,37:0,0:0,0:0,0	60:0:0:0:56,56:0,0:4,4:0,0
19	51247806	.	A	G	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:1:0:0:34,35:0,0:0,0:0,0	75:0:0:0:70,70:0,0:5,5:0,0
19	51302326	.	T	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||333|ACPT|protein_coding|CODING|ENST00000270594||1),DOWNSTREAM(MODIFIER||||426|ACPT|protein_coding|CODING|ENST00000270593||1),DOWNSTREAM(MODIFIER|||||SNORD88A|snoRNA|NON_CODING|ENST00000408314||1),DOWNSTREAM(MODIFIER|||||SNORD88C|snoRNA|NON_CODING|ENST00000408061||1),EXON(MODIFIER|||||SNORD88B|snoRNA|NON_CODING|ENST00000408454|1|1),INTRON(MODIFIER||||117|C19orf48|protein_coding|CODING|ENST00000345523|3|1),INTRON(MODIFIER||||117|C19orf48|protein_coding|CODING|ENST00000391812|4|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	23:0:0:0:0,0:0,0:0,0:23,24	62:2:0:0:1,1:0,0:8,8:51,53
19	54619407	.	A	C	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||AC012314.8|antisense|NON_CODING|ENST00000452097||1),DOWNSTREAM(MODIFIER|||||NDUFA3|processed_transcript|CODING|ENST00000484360||1),INTRON(MODIFIER||||259|PRPF31|protein_coding|CODING|ENST00000447810|1|1),INTRON(MODIFIER||||275|PRPF31|protein_coding|CODING|ENST00000445124|1|1),INTRON(MODIFIER||||283|PRPF31|protein_coding|CODING|ENST00000445811|1|1),INTRON(MODIFIER||||450|PRPF31|protein_coding|CODING|ENST00000419967|1|1),INTRON(MODIFIER||||499|PRPF31|protein_coding|CODING|ENST00000321030|1|1),UPSTREAM(MODIFIER||||193|TFPT|protein_coding|CODING|ENST00000391757||1),UPSTREAM(MODIFIER||||244|TFPT|protein_coding|CODING|ENST00000391758||1),UPSTREAM(MODIFIER||||253|TFPT|protein_coding|CODING|ENST00000391759||1),UPSTREAM(MODIFIER||||493|PRPF31|protein_coding|CODING|ENST00000391755||1),UPSTREAM(MODIFIER|||||AC012314.6|antisense|NON_CODING|ENST00000421718||1),UPSTREAM(MODIFIER|||||PRPF31|processed_transcript|CODING|ENST00000498612||1),UPSTREAM(MODIFIER|||||PRPF31|retained_intron|CODING|ENST00000466404||1),UPSTREAM(MODIFIER|||||PRPF31|retained_intron|CODING|ENST00000467851||1),UPSTREAM(MODIFIER|||||TFPT|nonsense_mediated_decay|CODING|ENST00000420715||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:0:0:0:32,32:0,0:0,0:1,1	67:0:0:0:55,56:11,11:1,1:0,0
19	54778822	.	G	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||LILRB2|processed_transcript|CODING|ENST00000471216||1),INTRON(MODIFIER||||482|LILRB2|protein_coding|CODING|ENST00000434421|12|1),INTRON(MODIFIER||||510|LILRB2|protein_coding|CODING|ENST00000391746|11|1),INTRON(MODIFIER||||597|LILRB2|protein_coding|CODING|ENST00000314446|13|1),INTRON(MODIFIER||||597|LILRB2|protein_coding|CODING|ENST00000391748|13|1),INTRON(MODIFIER||||598|LILRB2|protein_coding|CODING|ENST00000391749|13|1),INTRON(MODIFIER|||||LILRB2|retained_intron|CODING|ENST00000493242|12|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:1:0:0:0,0:0,0:30,31:0,0	67:1:0:0:8,8:0,0:58,63:0,0
19	55544545	.	C	G	.	PASS	NT=ref;QSS=23;QSS_NT=23;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||321|GP6|protein_coding|CODING|ENST00000333884|1|1),INTRON(MODIFIER||||339|GP6|protein_coding|CODING|ENST00000417454|1|1),INTRON(MODIFIER||||620|GP6|protein_coding|CODING|ENST00000310373|1|1),INTRON(MODIFIER|||||CTC-550B14.6|nonsense_mediated_decay|NON_CODING|ENST00000585492|5|1),INTRON(MODIFIER|||||CTC-550B14.7|antisense|NON_CODING|ENST00000586845|2|1),INTRON(MODIFIER|||||CTC-550B14.7|antisense|NON_CODING|ENST00000586961|1|1),INTRON(MODIFIER|||||CTC-550B14.7|antisense|NON_CODING|ENST00000593060|2|1),UPSTREAM(MODIFIER||||116|GP6|protein_coding|CODING|ENST00000468239||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	50:3:0:0:1,1:46,72:0,0:0,1	89:1:0:0:0,0:80,115:7,14:1,1
19	55547333	.	C	T	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||RDH13|nonsense_mediated_decay|CODING|ENST00000591960||1),DOWNSTREAM(MODIFIER|||||RDH13|processed_transcript|CODING|ENST00000586331||1),DOWNSTREAM(MODIFIER|||||RDH13|processed_transcript|CODING|ENST00000592423||1),INTRON(MODIFIER||||321|GP6|protein_coding|CODING|ENST00000333884|1|1),INTRON(MODIFIER||||339|GP6|protein_coding|CODING|ENST00000417454|1|1),INTRON(MODIFIER||||620|GP6|protein_coding|CODING|ENST00000310373|1|1),INTRON(MODIFIER|||||CTC-550B14.6|nonsense_mediated_decay|NON_CODING|ENST00000585492|5|1),INTRON(MODIFIER|||||CTC-550B14.7|antisense|NON_CODING|ENST00000586845|2|1),INTRON(MODIFIER|||||CTC-550B14.7|antisense|NON_CODING|ENST00000586961|1|1),INTRON(MODIFIER|||||CTC-550B14.7|antisense|NON_CODING|ENST00000593060|2|1),UPSTREAM(MODIFIER||||116|GP6|protein_coding|CODING|ENST00000468239||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	41:1:0:0:0,1:40,40:0,0:0,0	65:2:0:0:0,0:58,61:0,0:5,5
19	55679511	.	T	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||382|SYT5|protein_coding|CODING|ENST00000590851||1),DOWNSTREAM(MODIFIER||||386|SYT5|protein_coding|CODING|ENST00000354308||1),DOWNSTREAM(MODIFIER||||386|SYT5|protein_coding|CODING|ENST00000537500||1),DOWNSTREAM(MODIFIER|||||SYT5|processed_transcript|CODING|ENST00000592935||1),DOWNSTREAM(MODIFIER|||||SYT5|retained_intron|CODING|ENST00000543844||1),DOWNSTREAM(MODIFIER|||||snoU13|snoRNA|NON_CODING|ENST00000459370||1),INTRON(MODIFIER|||||CTD-2587H24.5|antisense|NON_CODING|ENST00000591665|4|1),UPSTREAM(MODIFIER||||104|DNAAF3|protein_coding|CODING|ENST00000532817||1),UPSTREAM(MODIFIER||||109|DNAAF3|protein_coding|CODING|ENST00000528476||1),UPSTREAM(MODIFIER||||111|DNAAF3|protein_coding|CODING|ENST00000534170||1),UPSTREAM(MODIFIER||||487|DNAAF3|protein_coding|CODING|ENST00000455045||1),UPSTREAM(MODIFIER||||541|DNAAF3|protein_coding|CODING|ENST00000391720||1),UPSTREAM(MODIFIER||||541|DNAAF3|protein_coding|CODING|ENST00000524407||1),UPSTREAM(MODIFIER||||561|DNAAF3|protein_coding|CODING|ENST00000301249||1),UPSTREAM(MODIFIER||||588|DNAAF3|protein_coding|CODING|ENST00000391719||1),UPSTREAM(MODIFIER||||608|DNAAF3|protein_coding|CODING|ENST00000527223||1),UPSTREAM(MODIFIER|||||DNAAF3|nonsense_mediated_decay|CODING|ENST00000528412||1),UPSTREAM(MODIFIER|||||DNAAF3|nonsense_mediated_decay|CODING|ENST00000534214||1),UPSTREAM(MODIFIER|||||DNAAF3|processed_transcript|CODING|ENST00000526003||1),UPSTREAM(MODIFIER|||||DNAAF3|retained_intron|CODING|ENST00000586877||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:0:0:0:0,0:0,0:0,0:29,29	68:1:0:0:0,0:8,8:0,0:59,61
19	55679513	.	A	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||382|SYT5|protein_coding|CODING|ENST00000590851||1),DOWNSTREAM(MODIFIER||||386|SYT5|protein_coding|CODING|ENST00000354308||1),DOWNSTREAM(MODIFIER||||386|SYT5|protein_coding|CODING|ENST00000537500||1),DOWNSTREAM(MODIFIER|||||SYT5|processed_transcript|CODING|ENST00000592935||1),DOWNSTREAM(MODIFIER|||||SYT5|retained_intron|CODING|ENST00000543844||1),DOWNSTREAM(MODIFIER|||||snoU13|snoRNA|NON_CODING|ENST00000459370||1),INTRON(MODIFIER|||||CTD-2587H24.5|antisense|NON_CODING|ENST00000591665|4|1),UPSTREAM(MODIFIER||||104|DNAAF3|protein_coding|CODING|ENST00000532817||1),UPSTREAM(MODIFIER||||109|DNAAF3|protein_coding|CODING|ENST00000528476||1),UPSTREAM(MODIFIER||||111|DNAAF3|protein_coding|CODING|ENST00000534170||1),UPSTREAM(MODIFIER||||487|DNAAF3|protein_coding|CODING|ENST00000455045||1),UPSTREAM(MODIFIER||||541|DNAAF3|protein_coding|CODING|ENST00000391720||1),UPSTREAM(MODIFIER||||541|DNAAF3|protein_coding|CODING|ENST00000524407||1),UPSTREAM(MODIFIER||||561|DNAAF3|protein_coding|CODING|ENST00000301249||1),UPSTREAM(MODIFIER||||588|DNAAF3|protein_coding|CODING|ENST00000391719||1),UPSTREAM(MODIFIER||||608|DNAAF3|protein_coding|CODING|ENST00000527223||1),UPSTREAM(MODIFIER|||||DNAAF3|nonsense_mediated_decay|CODING|ENST00000528412||1),UPSTREAM(MODIFIER|||||DNAAF3|nonsense_mediated_decay|CODING|ENST00000534214||1),UPSTREAM(MODIFIER|||||DNAAF3|processed_transcript|CODING|ENST00000526003||1),UPSTREAM(MODIFIER|||||DNAAF3|retained_intron|CODING|ENST00000586877||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:0:0:0:29,29:0,0:0,0:0,0	67:0:0:0:57,58:9,9:1,1:0,0
19	56176634	.	C	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||203|U2AF2|protein_coding|CODING|ENST00000588850||1),DOWNSTREAM(MODIFIER||||69|U2AF2|protein_coding|CODING|ENST00000590908||1),DOWNSTREAM(MODIFIER|||||U2AF2|processed_transcript|CODING|ENST00000586832||1),DOWNSTREAM(MODIFIER|||||U2AF2|processed_transcript|CODING|ENST00000587196||1),DOWNSTREAM(MODIFIER|||||U2AF2|retained_intron|CODING|ENST00000587275||1),DOWNSTREAM(MODIFIER|||||U2AF2|retained_intron|CODING|ENST00000592867||1),INTRON(MODIFIER||||307|U2AF2|protein_coding|CODING|ENST00000590551|2|1),INTRON(MODIFIER||||471|U2AF2|protein_coding|CODING|ENST00000450554|7|1),INTRON(MODIFIER||||475|U2AF2|protein_coding|CODING|ENST00000308924|7|1),INTRON(MODIFIER|||||CTD-2537I9.12|antisense|NON_CODING|ENST00000585940|1|1),INTRON(MODIFIER|||||CTD-2537I9.12|antisense|NON_CODING|ENST00000589456|1|1),INTRON(MODIFIER|||||U2AF2|nonsense_mediated_decay|CODING|ENST00000592874|5|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:2:0:0:0,0:29,32:0,0:0,0	61:2:0:0:0,0:52,56:7,7:0,0
19	56660776	.	T	C	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=TT->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=DOWNSTREAM(MODIFIER||||238|AC024580.1|protein_coding|CODING|ENST00000376271||1),DOWNSTREAM(MODIFIER||||43|ZNF444|protein_coding|CODING|ENST00000588203||1),DOWNSTREAM(MODIFIER||||69|ZNF444|protein_coding|CODING|ENST00000586123||1),DOWNSTREAM(MODIFIER||||71|ZNF444|protein_coding|CODING|ENST00000588358||1),DOWNSTREAM(MODIFIER||||76|ZNF444|protein_coding|CODING|ENST00000591564||1),DOWNSTREAM(MODIFIER||||89|ZNF444|protein_coding|CODING|ENST00000587467||1),DOWNSTREAM(MODIFIER||||98|ZNF444|protein_coding|CODING|ENST00000593100||1),INTRON(MODIFIER||||326|ZNF444|protein_coding|CODING|ENST00000592949|3|1),INTRON(MODIFIER||||327|ZNF444|protein_coding|CODING|ENST00000337080|3|1),INTRON(MODIFIER|||||ZNF444|processed_transcript|CODING|ENST00000587195|3|1),INTRON(MODIFIER|||||ZNF444|processed_transcript|CODING|ENST00000587664|1|1),UPSTREAM(MODIFIER|||||ZNF444|retained_intron|CODING|ENST00000587236||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:3:0:0:0,0:0,0:0,1:26,28	49:6:0:0:0,0:8,8:0,0:35,45
19	57301491	.	C	A	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||527|PEG3|protein_coding|CODING|ENST00000221722|7|1),INTRON(MODIFIER||||527|PEG3|protein_coding|CODING|ENST00000391708|8|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:1:0:0:0,0:32,33:0,0:0,0	65:0:0:0:8,8:57,57:0,0:0,0
19	57959297	.	G	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||65|ZNF749|protein_coding|CODING|ENST00000415248||1),DOWNSTREAM(MODIFIER||||778|ZNF749|protein_coding|CODING|ENST00000334181||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	27:0:0:0:0,0:0,0:27,29:0,0	70:2:0:0:1,1:8,8:59,62:0,0
19	58385748	rs145250945;COSM1129685	G	A	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|gCt/gTt|A337V|855|ZNF814|protein_coding|CODING|ENST00000435989|3|1);RSPOS=58385748;dbSNPBuildID=134;SSR=0;SAO=0;VP=050200000a05000002000100;GENEINFO=ZNF814:730051;WGT=1;VC=SNV;S3D;NSM;REF;ASP;OTHERKG;GENE=ZNF814;STRAND=-;CDS=c.1010C>T;AA=p.A337V;CNT=2	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	25:1:0:0:0,1:0,0:22,24:2,2	56:1:0:0:11,17:0,0:43,50:1,1
19	58773139	.	T	C	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=SYNONYMOUS_CODING(LOW|SILENT|ttT/ttC|F361|687|ZNF544|protein_coding|CODING|ENST00000415203|3|1),SYNONYMOUS_CODING(LOW|SILENT|ttT/ttC|F389|715|ZNF544|protein_coding|CODING|ENST00000269829|7|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	45:0:0:0:0,0:0,0:0,0:45,45	86:0:0:0:0,0:5,5:0,0:81,82
19	58999373	rs76887893	A	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||Metazoa_SRP|misc_RNA|NON_CODING|ENST00000579576||1),INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||U6|snRNA|NON_CODING|ENST00000516525||1);RSPOS=58999373;dbSNPBuildID=131;SSR=0;SAO=0;VP=050000000001040102000100;WGT=1;VC=SNV;VLD;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	42:0:0:0:39,41:2,2:1,1:0,0	82:0:0:0:70,70:0,0:12,13:0,0
19	58999406	rs79548882	G	A	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||Metazoa_SRP|misc_RNA|NON_CODING|ENST00000579576||1),INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||U6|snRNA|NON_CODING|ENST00000516525||1);RSPOS=58999406;dbSNPBuildID=131;SSR=0;SAO=0;VP=050000000001040102000100;WGT=1;VC=SNV;VLD;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:2:0:0:0,0:0,1:34,37:0,0	67:1:0:0:6,7:0,1:60,60:0,0
20	1238886	rs147355278	G	A	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||556|RAD21L1|protein_coding|CODING|ENST00000409241||1),INTRON(MODIFIER||||521|RAD21L1|protein_coding|CODING|ENST00000381882|12|1),INTRON(MODIFIER||||521|RAD21L1|protein_coding|CODING|ENST00000402452|12|1);RSPOS=1238886;GMAF=0.0513;dbSNPBuildID=134;SSR=0;SAO=0;VP=050000000005000014000100;WGT=1;VC=SNV;ASP;KGPhase1;KGPROD	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:1:0:0:0,0:0,0:35,36:0,0	81:0:0:0:8,11:0,0:73,73:0,0
20	3345594	rs28536122	C	T	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||U6|snRNA|NON_CODING|ENST00000364424||1),INTRON(MODIFIER||||1177|C20orf194|protein_coding|CODING|ENST00000252032|6|1),UPSTREAM(MODIFIER|||||UBE2V1P1|processed_pseudogene|NON_CODING|ENST00000430836||1);RSPOS=3345594;dbSNPBuildID=125;SSR=0;SAO=0;VP=050000080005000002000100;GENEINFO=C20orf194:25943;WGT=1;VC=SNV;INT;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	16:0:13:0:0,0:16,16:0,0:0,0	37:0:27:0:0,0:26,26:0,0:11,11
20	5314447	.	C	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:1:0:0:0,0:29,30:0,0:0,0	78:0:0:0:0,0:69,69:0,0:9,9
20	5779486	.	G	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||120|C20orf196|protein_coding|CODING|ENST00000445603|3|1),INTRON(MODIFIER||||199|C20orf196|protein_coding|CODING|ENST00000442185|3|1),INTRON(MODIFIER||||205|C20orf196|protein_coding|CODING|ENST00000303142|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:0:0:0:0,0:0,0:34,35:0,0	64:0:0:0:5,5:0,0:58,59:1,1
20	6202116	.	T	C	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	42:0:0:0:0,0:0,0:0,0:42,42	72:1:0:0:0,0:5,5:0,0:66,68
20	6232330	.	C	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:0:0:0:0,0:33,33:0,0:0,0	69:0:0:0:0,0:65,65:0,0:4,4
20	6426087	.	T	C	.	PASS	NT=ref;QSS=26;QSS_NT=26;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||RP11-199O14.1|lincRNA|NON_CODING|ENST00000415932||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:1:0:0:0,0:0,0:0,0:29,30	74:1:0:0:0,0:14,14:0,0:59,61
20	6659979	.	C	A	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:0:0:0:0,0:34,34:0,0:0,0	85:0:0:0:6,6:79,79:0,0:0,0
20	11329302	.	C	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||RPS11P1|processed_pseudogene|NON_CODING|ENST00000451072||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	27:0:0:0:0,0:27,27:0,0:0,0	59:0:0:0:0,0:53,54:0,0:6,6
20	12875381	.	A	C	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP5-1069C8.2|lincRNA|NON_CODING|ENST00000456265|8|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:0:0:0:34,34:0,0:0,0:0,0	71:1:0:0:63,65:7,8:0,0:0,0
20	13641403	.	G	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:0:0:0:0,0:0,0:31,31:0,0	86:1:0:0:9,9:0,0:76,77:0,0
20	13667719	.	G	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:3:0:0:0,0:0,1:31,33:0,0	63:3:0:0:7,7:2,3:51,53:0,0
20	13667722	.	A	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:2:0:0:32,34:0,0:0,0:0,0	62:6:0:0:49,51:0,2:1,1:6,8
20	14203826	.	C	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=EXON(MODIFIER|||||Metazoa_SRP|misc_RNA|NON_CODING|ENST00000493457|1|1),INTRON(MODIFIER||||425|MACROD2|protein_coding|CODING|ENST00000217246|3|1),INTRON(MODIFIER||||448|MACROD2|protein_coding|CODING|ENST00000310348|3|1),INTRON(MODIFIER|||||MACROD2|processed_transcript|CODING|ENST00000477147|3|1),INTRON(MODIFIER|||||MACROD2|processed_transcript|CODING|ENST00000490428|3|1),INTRON(MODIFIER|||||MACROD2|processed_transcript|CODING|ENST00000494602|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	28:0:0:0:0,0:28,28:0,0:0,0	68:2:0:0:4,4:62,63:0,1:0,0
20	14318517	.	G	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||425|MACROD2|protein_coding|CODING|ENST00000217246|3|1),INTRON(MODIFIER||||448|MACROD2|protein_coding|CODING|ENST00000310348|3|1),INTRON(MODIFIER|||||MACROD2|processed_transcript|CODING|ENST00000477147|3|1),INTRON(MODIFIER|||||MACROD2|processed_transcript|CODING|ENST00000490428|3|1),INTRON(MODIFIER|||||MACROD2|processed_transcript|CODING|ENST00000494602|3|1),UPSTREAM(MODIFIER||||649|FLRT3|protein_coding|CODING|ENST00000341420||1),UPSTREAM(MODIFIER||||649|FLRT3|protein_coding|CODING|ENST00000378053||1),UPSTREAM(MODIFIER|||||FLRT3|processed_transcript|CODING|ENST00000462077||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:0:0:0:0,0:0,0:34,34:0,0	79:0:0:0:0,0:4,4:75,75:0,0
20	14639275	.	T	G	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||425|MACROD2|protein_coding|CODING|ENST00000217246|4|1),INTRON(MODIFIER||||448|MACROD2|protein_coding|CODING|ENST00000310348|4|1),INTRON(MODIFIER|||||MACROD2|processed_transcript|CODING|ENST00000463861|1|1),INTRON(MODIFIER|||||MACROD2|processed_transcript|CODING|ENST00000464883|1|1),INTRON(MODIFIER|||||MACROD2|processed_transcript|CODING|ENST00000490428|4|1),INTRON(MODIFIER|||||MACROD2|processed_transcript|CODING|ENST00000497992|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:0:0:0:0,0:0,0:0,0:34,34	83:1:0:0:0,0:0,0:5,5:77,78
20	14728625	.	C	A	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||425|MACROD2|protein_coding|CODING|ENST00000217246|5|1),INTRON(MODIFIER||||448|MACROD2|protein_coding|CODING|ENST00000310348|5|1),INTRON(MODIFIER|||||MACROD2|processed_transcript|CODING|ENST00000463861|2|1),INTRON(MODIFIER|||||MACROD2|processed_transcript|CODING|ENST00000464883|2|1),INTRON(MODIFIER|||||MACROD2|processed_transcript|CODING|ENST00000497992|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:1:0:0:0,0:34,35:0,0:0,0	75:1:0:0:8,8:66,68:0,0:0,0
20	14734173	.	T	G	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||425|MACROD2|protein_coding|CODING|ENST00000217246|5|1),INTRON(MODIFIER||||448|MACROD2|protein_coding|CODING|ENST00000310348|5|1),INTRON(MODIFIER|||||MACROD2|processed_transcript|CODING|ENST00000463861|2|1),INTRON(MODIFIER|||||MACROD2|processed_transcript|CODING|ENST00000464883|2|1),INTRON(MODIFIER|||||MACROD2|processed_transcript|CODING|ENST00000497992|2|1),UPSTREAM(MODIFIER|||||RPS10P2|processed_pseudogene|NON_CODING|ENST00000430953||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	28:2:0:0:0,0:0,0:0,0:26,28	80:0:0:0:0,0:0,0:13,13:67,67
20	15202236	.	G	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||213|MACROD2|protein_coding|CODING|ENST00000402914|1|1),INTRON(MODIFIER||||425|MACROD2|protein_coding|CODING|ENST00000217246|5|1),INTRON(MODIFIER||||448|MACROD2|protein_coding|CODING|ENST00000310348|5|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	28:0:0:0:0,0:0,0:28,28:0,0	78:1:0:0:0,0:0,0:68,69:9,9
20	16866184	rs67514953	T	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=16866184;dbSNPBuildID=130;SSR=0;SAO=0;VP=050100000005000102000100;WGT=1;VC=SNV;SLO;ASP;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:1:0:0:0,0:0,0:0,0:29,30	57:1:0:0:0,0:0,0:4,4:52,53
20	17382566	.	G	C	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||603|PCSK2|protein_coding|CODING|ENST00000536609|4|1),INTRON(MODIFIER||||619|PCSK2|protein_coding|CODING|ENST00000377899|6|1),INTRON(MODIFIER||||638|PCSK2|protein_coding|CODING|ENST00000262545|5|1),INTRON(MODIFIER|||||PCSK2|processed_transcript|CODING|ENST00000470007|5|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:0:0:0:0,0:0,0:39,39:1,1	56:0:0:0:0,0:5,5:51,51:0,0
20	18296626	COSM287952	T	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||141|ZNF133|protein_coding|CODING|ENST00000434018||1),DOWNSTREAM(MODIFIER||||178|ZNF133|protein_coding|CODING|ENST00000425686||1),DOWNSTREAM(MODIFIER||||98|ZNF133|protein_coding|CODING|ENST00000360010||1),EXON(MODIFIER|||||ZNF133|processed_transcript|CODING|ENST00000462170|2|1),SYNONYMOUS_CODING(LOW|SILENT|tcT/tcA|S282|559|ZNF133|protein_coding|CODING|ENST00000535822|3|1),SYNONYMOUS_CODING(LOW|SILENT|tcT/tcA|S282|559|ZNF133|protein_coding|CODING|ENST00000538547|2|1),SYNONYMOUS_CODING(LOW|SILENT|tcT/tcA|S314|591|ZNF133|protein_coding|CODING|ENST00000402618|5|1),SYNONYMOUS_CODING(LOW|SILENT|tcT/tcA|S376|653|ZNF133|protein_coding|CODING|ENST00000377671|7|1),SYNONYMOUS_CODING(LOW|SILENT|tcT/tcA|S377|654|ZNF133|protein_coding|CODING|ENST00000316358|4|1),SYNONYMOUS_CODING(LOW|SILENT|tcT/tcA|S377|654|ZNF133|protein_coding|CODING|ENST00000401790|5|1),SYNONYMOUS_CODING(LOW|SILENT|tcT/tcA|S380|657|ZNF133|protein_coding|CODING|ENST00000396026|5|1),UPSTREAM(MODIFIER|||||RP4-568F9.3|antisense|NON_CODING|ENST00000436848||1);GENE=ZNF133;STRAND=+;CDS=c.1128T>A;AA=p.S376S;CNT=1	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:1:0:0:0,0:0,0:1,1:32,33	72:5:0:0:6,9:0,0:1,2:60,61
20	18360668	.	T	C	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||585|DZANK1|protein_coding|CODING|ENST00000377630||1),DOWNSTREAM(MODIFIER||||638|DZANK1|protein_coding|CODING|ENST00000357236||1),DOWNSTREAM(MODIFIER||||730|DZANK1|protein_coding|CODING|ENST00000329494||1),DOWNSTREAM(MODIFIER||||752|DZANK1|protein_coding|CODING|ENST00000262547||1),DOWNSTREAM(MODIFIER|||||DZANK1|processed_transcript|CODING|ENST00000476058||1),DOWNSTREAM(MODIFIER|||||DZANK1|processed_transcript|CODING|ENST00000487128||1),INTRON(MODIFIER|||||DZANK1-AS1|antisense|NON_CODING|ENST00000423033|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:1:0:0:0,0:0,0:0,0:39,40	67:0:0:0:0,0:4,5:0,0:63,65
20	19630505	.	C	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||644|SLC24A3|protein_coding|CODING|ENST00000328041|6|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	28:0:0:0:0,0:28,28:0,0:0,0	87:0:0:0:7,7:80,80:0,0:0,0
20	20003127	.	A	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=EXON(MODIFIER|||||NAA20|retained_intron|CODING|ENST00000481837|2|1),INTRON(MODIFIER||||111|NAA20|protein_coding|CODING|ENST00000310450|2|1),INTRON(MODIFIER||||166|NAA20|protein_coding|CODING|ENST00000398602|2|1),INTRON(MODIFIER||||178|NAA20|protein_coding|CODING|ENST00000334982|2|1),INTRON(MODIFIER|||||NAA20|processed_transcript|CODING|ENST00000463154|2|1),INTRON(MODIFIER|||||NAA20|processed_transcript|CODING|ENST00000480550|1|1),INTRON(MODIFIER|||||NAA20|processed_transcript|CODING|ENST00000484480|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:0:0:0:30,30:0,0:0,0:0,0	59:4:0:0:50,54:0,0:5,5:0,0
20	21016371	.	T	C	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:1:0:0:0,0:0,0:0,0:36,38	75:1:0:0:0,0:5,5:0,0:69,71
20	22519612	.	T	C	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	23:0:0:0:0,0:1,1:0,0:22,24	50:0:0:0:0,0:16,16:0,0:34,40
20	22877001	.	T	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:0:0:0:0,0:0,0:0,0:32,32	58:0:0:0:0,0:4,4:0,0:54,56
20	23075896	.	G	A	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:1:0:0:0,0:0,0:35,36:0,0	84:1:0:0:6,6:0,0:77,79:0,0
20	23554961	.	C	A	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:2:0:0:0,0:36,38:0,0:0,0	68:0:0:0:7,7:61,61:0,0:0,0
20	24215510	.	T	G	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||RNU1-23P|snRNA|NON_CODING|ENST00000363361||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:0:0:0:0,0:0,0:0,0:37,37	67:0:0:0:0,0:0,0:9,9:58,58
20	24245880	.	T	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:1:0:0:0,0:0,0:0,1:30,30	93:1:0:0:7,8:0,0:0,0:85,85
20	25734954	rs199548200	T	G	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||RP13-401N8.1|antisense|NON_CODING|ENST00000376445||1),INTERGENIC(MODIFIER||||||||||1);RSPOS=25734954;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:1:0:0:0,0:0,0:0,0:39,45	107:2:0:0:0,0:0,0:8,10:97,110
20	25755332	.	C	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||106|FAM182B|protein_coding|CODING|ENST00000584071||1),DOWNSTREAM(MODIFIER|||||FAM182B|processed_transcript|CODING|ENST00000582267||1),DOWNSTREAM(MODIFIER|||||FAM182B|processed_transcript|CODING|ENST00000584356||1),INTRON(MODIFIER||||77|FAM182B|protein_coding|CODING|ENST00000376404|3|1),INTRON(MODIFIER|||||FAM182B|processed_transcript|CODING|ENST00000453481|1|1),INTRON(MODIFIER|||||FAM182B|processed_transcript|CODING|ENST00000478164|3|1),INTRON(MODIFIER|||||FAM182B|processed_transcript|CODING|ENST00000485279|1|1),UTR_3_PRIME(MODIFIER||||152|FAM182B|protein_coding|CODING|ENST00000376403|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	80:4:0:0:0,1:76,87:0,0:0,0	172:3:0:0:8,9:160,172:0,0:1,1
20	25826194	.	C	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||106|FAM182B|protein_coding|CODING|ENST00000584071|2|1),INTRON(MODIFIER||||152|FAM182B|protein_coding|CODING|ENST00000376403|2|1),INTRON(MODIFIER||||77|FAM182B|protein_coding|CODING|ENST00000376404|2|1),INTRON(MODIFIER|||||FAM182B|processed_transcript|CODING|ENST00000478164|1|1),INTRON(MODIFIER|||||FAM182B|processed_transcript|CODING|ENST00000582267|5|1),INTRON(MODIFIER|||||FAM182B|processed_transcript|CODING|ENST00000584356|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	60:2:0:0:0,2:58,72:0,0:0,0	104:1:0:0:7,9:96,119:0,0:0,0
20	25832972	.	G	T	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||106|FAM182B|protein_coding|CODING|ENST00000584071|1|1),INTRON(MODIFIER||||152|FAM182B|protein_coding|CODING|ENST00000376403|1|1),INTRON(MODIFIER||||77|FAM182B|protein_coding|CODING|ENST00000376404|1|1),INTRON(MODIFIER|||||FAM182B|processed_transcript|CODING|ENST00000478164|1|1),INTRON(MODIFIER|||||FAM182B|processed_transcript|CODING|ENST00000582267|2|1),INTRON(MODIFIER|||||FAM182B|processed_transcript|CODING|ENST00000584356|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:0:0:0:0,0:0,0:38,38:0,0	90:0:0:0:0,0:0,0:81,81:9,10
20	25848125	.	T	G	.	PASS	NT=ref;QSS=23;QSS_NT=23;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=EXON(MODIFIER|||||RP13-401N8.4|lincRNA|NON_CODING|ENST00000424021|2|1),INTRON(MODIFIER||||77|FAM182B|protein_coding|CODING|ENST00000376404|1|1),INTRON(MODIFIER|||||FAM182B|processed_transcript|CODING|ENST00000478164|1|1),INTRON(MODIFIER|||||FAM182B|processed_transcript|CODING|ENST00000582267|2|1),UPSTREAM(MODIFIER||||152|FAM182B|protein_coding|CODING|ENST00000376403||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	50:3:0:0:0,0:0,0:0,1:47,59	102:8:0:0:0,0:1,2:5,9:88,112
20	25856378	.	C	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->CG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	45:0:0:0:0,0:44,47:0,3:1,1	83:3:0:0:0,0:75,86:5,9:0,0
20	25884983	.	T	G	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	43:1:0:0:0,0:0,0:0,0:42,48	88:0:0:0:0,0:0,0:6,8:82,90
20	25896980	rs6050990	G	T	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||CFTRP1|unprocessed_pseudogene|NON_CODING|ENST00000456646||1),INTERGENIC(MODIFIER||||||||||1);RSPOS=25896980;GMAF=0.3672;dbSNPBuildID=114;SSR=0;SAO=0;VP=05010000000507011e000100;WGT=1;VC=SNV;SLO;ASP;VLD;G5A;G5;GNO;KGPhase1;KGPilot123;KGPROD;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:0:0:0:0,0:0,0:36,36:0,1	90:1:0:0:0,0:0,0:78,79:11,23
20	25914877	rs77407376	C	T	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=25914877;dbSNPBuildID=131;SSR=0;SAO=0;VP=050000000009040102000100;WGT=1;VC=SNV;CFL;VLD;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:0:0:0:0,0:38,38:0,0:0,2	79:1:0:0:0,0:69,70:0,0:9,20
20	25917946	rs75758259	A	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=25917946;dbSNPBuildID=131;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:0:9:0:35,35:0,0:0,0:0,0	88:0:21:0:80,80:0,0:0,0:8,10
20	25917970	rs78858078	A	G	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=25917970;dbSNPBuildID=131;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:0:0:0:39,40:0,0:0,0:0,0	99:0:0:0:94,99:0,0:5,6:0,0
20	25921893	rs201344576	T	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=25921893;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	50:5:0:0:0,1:0,0:0,0:45,55	140:9:0:0:0,0:6,8:0,1:125,136
20	26077608	.	G	A	.	PASS	NT=ref;QSS=25;QSS_NT=25;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||77|FAM182A|protein_coding|CODING|ENST00000415411||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	60:2:0:0:0,0:0,0:58,84:0,0	164:6:0:0:7,13:0,1:151,186:0,0
20	26079219	.	G	T	.	PASS	NT=ref;QSS=23;QSS_NT=23;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||NCOR1P1|processed_transcript|NON_CODING|ENST00000478176||1),DOWNSTREAM(MODIFIER|||||NCOR1P1|transcribed_unprocessed_pseudogene|NON_CODING|ENST00000486162||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	64:3:0:0:0,0:0,0:61,101:0,3	119:5:0:0:0,1:0,0:108,160:6,16
20	26086310	.	C	G	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||NCOR1P1|processed_transcript|NON_CODING|ENST00000478176|1|1),INTRON(MODIFIER|||||NCOR1P1|transcribed_unprocessed_pseudogene|NON_CODING|ENST00000486162|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:0:1:0:0,0:36,36:0,0:0,0	86:0:1:0:1,1:76,77:9,10:0,0
20	26090180	.	G	A	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER|||||NCOR1P1|processed_transcript|NON_CODING|ENST00000478176|1|1),INTRON(MODIFIER|||||NCOR1P1|transcribed_unprocessed_pseudogene|NON_CODING|ENST00000486162|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:0:0:0:0,1:0,0:35,36:0,0	79:2:0:0:9,15:0,0:68,68:0,0
20	26234454	.	T	C	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:4:0:0:0,0:0,0:0,0:34,38	81:3:0:0:0,0:8,9:0,0:70,73
20	26250377	rs78773426	A	G	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=26250377;dbSNPBuildID=131;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:4:0:0:34,41:0,0:0,0:0,0	80:2:0:0:73,79:0,0:5,7:0,1
20	26264380	.	T	C	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	66:16:0:0:0,0:0,3:0,7:50,164	134:31:0:0:0,0:5,15:0,5:98,336
20	26267402	.	T	G	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:0:0:0:0,0:0,0:0,0:33,34	81:2:0:0:0,0:0,0:5,7:74,78
20	26267411	.	A	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:0:0:0:32,33:0,0:0,0:0,0	74:1:0:0:68,71:0,0:0,0:5,7
20	26269379	.	A	G	.	PASS	NT=ref;QSS=24;QSS_NT=24;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	54:6:0:0:48,92:0,0:0,2:0,0	144:20:0:0:114,217:1,1:8,14:1,2
20	26269423	.	C	G	.	PASS	NT=ref;QSS=24;QSS_NT=24;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	61:14:0:0:0,1:47,85:0,2:0,0	136:33:0:0:2,7:93,178:8,14:0,3
20	26269430	.	T	A	.	PASS	NT=ref;QSS=26;QSS_NT=26;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	63:12:0:0:0,2:0,1:0,0:51,87	136:28:0:0:8,13:0,1:0,0:100,187
20	26269438	.	G	C	.	PASS	NT=ref;QSS=25;QSS_NT=25;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	60:11:0:0:0,1:0,2:49,80:0,0	130:25:0:0:0,2:7,13:98,170:0,0
20	26286631	.	A	C	.	PASS	NT=ref;QSS=24;QSS_NT=24;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	53:6:0:0:47,82:0,0:0,1:0,1	122:16:0:0:99,219:7,12:0,1:0,5
20	26297051	.	C	T	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=CC->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	77:13:0:0:0,0:64,126:0,0:0,4	142:21:0:0:0,2:113,235:1,1:7,23
20	29432619	.	C	T	.	PASS	NT=ref;QSS=27;QSS_NT=27;SGT=CC->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	72:1:0:0:0,1:71,80:0,0:0,2	181:2:0:0:0,0:167,182:0,1:12,16
20	29432817	.	T	C	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=TT->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	85:2:0:0:0,0:0,3:0,0:83,97	218:3:0:0:0,0:17,21:1,2:197,210
20	29432834	.	G	A	.	PASS	NT=ref;QSS=30;QSS_NT=30;SGT=GG->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	82:1:0:0:0,1:0,0:80,94:1,1	205:2:0:0:15,19:0,1:188,201:0,0
20	29432837	.	C	A	.	PASS	NT=ref;QSS=30;QSS_NT=30;SGT=CC->AC;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	80:1:0:0:0,1:79,93:0,0:0,0	206:1:0:0:14,18:191,204:0,0:0,0
20	29432870	rs191532258	T	C	.	PASS	NT=ref;QSS=25;QSS_NT=25;SGT=TT->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=29432870;dbSNPBuildID=135;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	75:1:0:0:0,0:0,2:0,0:74,89	200:0:0:0:1,1:9,12:0,0:190,210
20	29464671	rs74755354	T	A	.	PASS	NT=ref;QSS=30;QSS_NT=30;SGT=TT->AT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=29464671;dbSNPBuildID=131;SSR=0;SAO=0;VP=050000000009000102000100;WGT=1;VC=SNV;CFL;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	72:2:0:0:0,1:0,0:0,0:70,72	162:0:0:0:21,26:0,1:0,0:141,141
20	29465398	rs200006508	C	G	.	PASS	NT=ref;QSS=32;QSS_NT=32;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=29465398;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	67:2:0:0:0,0:65,67:0,0:0,0	158:2:0:0:0,0:145,148:11,13:0,0
20	29465404	rs190963927	A	G	.	PASS	NT=ref;QSS=32;QSS_NT=32;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=29465404;dbSNPBuildID=135;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	66:1:0:0:65,66:0,0:0,0:0,0	159:2:0:0:145,148:1,1:11,13:0,0
20	29466013	.	C	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	56:0:0:0:0,0:56,57:0,0:0,1	169:0:0:0:0,0:161,161:0,0:8,9
20	29466055	.	T	G	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=TT->GT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	60:0:0:0:0,0:0,0:0,1:60,61	167:2:0:0:0,0:0,0:7,8:158,160
20	29466459	rs200622336	G	T	.	PASS	NT=ref;QSS=23;QSS_NT=23;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=29466459;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	51:0:0:0:0,0:0,0:51,52:0,1	115:1:0:0:0,1:0,0:106,108:8,18
20	29466484	.	C	T	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=CC->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	50:1:0:0:0,0:49,51:0,0:0,1	129:2:0:0:0,0:119,123:0,0:8,16
20	29484216	.	A	G	.	PASS	NT=ref;QSS=23;QSS_NT=23;SGT=AA->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	53:0:0:0:53,53:0,0:0,1:0,0	154:1:0:0:146,146:0,0:7,8:0,0
20	29518685	.	C	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||RP4-610C12.3|lincRNA|NON_CODING|ENST00000454331||1),INTRON(MODIFIER|||||RP4-610C12.4|lincRNA|NON_CODING|ENST00000380888|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	63:22:0:0:0,0:40,90:0,1:1,2	137:24:0:0:0,0:108,189:0,1:5,8
20	29546195	.	G	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||Y_RNA|misc_RNA|NON_CODING|ENST00000363455||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	58:1:0:0:0,0:0,0:57,59:0,0	135:2:0:0:5,5:0,0:128,137:0,0
20	29581544	.	C	A	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=CC->AC;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER|||||RP4-610C12.1|antisense|NON_CODING|ENST00000432067|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	82:1:0:0:1,4:80,109:0,0:0,0	175:1:0:0:12,21:162,201:0,0:0,0
20	29581730	.	C	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP4-610C12.1|antisense|NON_CODING|ENST00000432067|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	81:1:0:0:0,1:80,83:0,0:0,0	175:3:0:0:2,2:163,180:7,12:0,0
20	29586106	.	A	T	.	PASS	NT=ref;QSS=33;QSS_NT=33;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP4-610C12.1|antisense|NON_CODING|ENST00000432067|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	73:5:0:0:68,84:0,0:0,0:0,1	159:7:0:0:145,177:0,1:0,1:7,8
20	29598191	.	T	G	.	PASS	NT=ref;QSS=36;QSS_NT=36;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||RP4-610C12.1|antisense|NON_CODING|ENST00000432067||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	73:0:0:0:0,0:0,0:0,1:73,104	215:3:0:0:0,0:0,0:8,11:204,246
20	29598746	.	C	A	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||RP4-610C12.1|antisense|NON_CODING|ENST00000432067||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	77:1:0:0:1,1:75,93:0,0:0,0	165:1:0:0:7,7:157,181:0,0:0,0
20	29611751	.	G	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER||||121|FRG1B|protein_coding|CODING|ENST00000439954||1),UPSTREAM(MODIFIER||||182|FRG1B|protein_coding|CODING|ENST00000278882||1),UPSTREAM(MODIFIER||||182|FRG1B|protein_coding|CODING|ENST00000358464||1),UPSTREAM(MODIFIER|||||FRG1B|processed_transcript|CODING|ENST00000468180||1),UPSTREAM(MODIFIER|||||FRG1B|processed_transcript|CODING|ENST00000482423||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	62:14:0:0:0,0:0,0:48,70:0,0	114:16:0:0:0,0:0,0:93,125:5,7
20	29611979	.	G	C	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=EXON(MODIFIER|||||FRG1B|processed_transcript|CODING|ENST00000468180|1|1),START_GAINED(LOW||||121|FRG1B|protein_coding|CODING|ENST00000439954|1|1),START_GAINED(LOW||||182|FRG1B|protein_coding|CODING|ENST00000278882|1|1),START_GAINED(LOW||||182|FRG1B|protein_coding|CODING|ENST00000358464|1|1),UPSTREAM(MODIFIER|||||FRG1B|processed_transcript|CODING|ENST00000482423||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	72:3:0:0:0,0:0,0:69,94:0,0	195:3:0:0:0,0:7,10:185,227:0,0
20	29613308	.	A	G	.	PASS	NT=ref;QSS=25;QSS_NT=25;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||FRG1B|processed_transcript|CODING|ENST00000468180||1),INTRON(MODIFIER||||121|FRG1B|protein_coding|CODING|ENST00000439954|1|1),INTRON(MODIFIER||||182|FRG1B|protein_coding|CODING|ENST00000278882|1|1),INTRON(MODIFIER||||182|FRG1B|protein_coding|CODING|ENST00000358464|1|1),INTRON(MODIFIER|||||FRG1B|processed_transcript|CODING|ENST00000482423|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	95:0:0:0:94,118:0,0:1,3:0,0	201:3:0:0:189,245:0,0:9,13:0,0
20	29618062	rs200709164	G	A	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||121|FRG1B|protein_coding|CODING|ENST00000439954|2|1),INTRON(MODIFIER||||182|FRG1B|protein_coding|CODING|ENST00000278882|2|1),INTRON(MODIFIER||||182|FRG1B|protein_coding|CODING|ENST00000358464|2|1),INTRON(MODIFIER|||||FRG1B|processed_transcript|CODING|ENST00000482423|3|1);RSPOS=29618062;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000080005000002000100;WGT=1;VC=SNV;INT;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:0:0:0:0,0:0,0:38,39:0,0	80:1:0:0:5,12:1,1:73,78:0,0
20	29621170	.	G	A	.	PASS	NT=ref;QSS=36;QSS_NT=36;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||121|FRG1B|protein_coding|CODING|ENST00000439954|2|1),INTRON(MODIFIER||||182|FRG1B|protein_coding|CODING|ENST00000278882|2|1),INTRON(MODIFIER||||182|FRG1B|protein_coding|CODING|ENST00000358464|2|1),INTRON(MODIFIER|||||FRG1B|processed_transcript|CODING|ENST00000482423|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	77:3:0:0:0,1:0,0:74,97:0,0	201:4:0:0:10,13:0,1:186,219:1,1
20	29626498	.	A	G	.	PASS	NT=ref;QSS=25;QSS_NT=25;SGT=AA->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=DOWNSTREAM(MODIFIER|||||FRG1B|processed_transcript|CODING|ENST00000482423||1),INTRON(MODIFIER||||121|FRG1B|protein_coding|CODING|ENST00000439954|5|1),INTRON(MODIFIER||||182|FRG1B|protein_coding|CODING|ENST00000278882|5|1),INTRON(MODIFIER||||182|FRG1B|protein_coding|CODING|ENST00000358464|5|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	74:14:14:0:60,100:0,0:0,2:0,0	143:26:30:0:111,199:0,0:6,19:0,0
20	29812745	.	T	C	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	90:15:0:0:0,1:1,25:1,9:73,453	210:35:0:0:6,20:11,50:0,12:158,918
20	29813852	rs75855873	T	G	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=29813852;dbSNPBuildID=131;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:0:0:0:0,1:1,4:0,1:31,39	71:6:0:0:0,1:0,7:10,21:55,66
20	29831178	.	T	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	41:4:0:0:0,1:0,3:0,2:37,130	81:6:0:0:0,0:5,17:0,2:70,275
20	31176647	.	T	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER||||140|RP11-410N8.4|protein_coding|CODING|ENST00000375670|1|1),INTRON(MODIFIER|||||RP11-410N8.1|processed_transcript|NON_CODING|ENST00000457213|1|1),UPSTREAM(MODIFIER||||175|C20orf112|protein_coding|CODING|ENST00000201961||1),UPSTREAM(MODIFIER|||||C20orf112|processed_transcript|CODING|ENST00000485364||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:1:0:0:0,0:0,1:0,0:38,39	81:3:0:0:0,0:8,9:0,0:70,73
20	31590366	.	G	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||122|SUN5|protein_coding|CODING|ENST00000375519|3|1),INTRON(MODIFIER||||152|SUN5|protein_coding|CODING|ENST00000420875|3|1),INTRON(MODIFIER||||354|SUN5|protein_coding|CODING|ENST00000375523|2|1),INTRON(MODIFIER||||379|SUN5|protein_coding|CODING|ENST00000356173|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:1:0:0:0,0:0,0:32,33:0,0	70:0:0:0:6,6:0,0:64,65:0,0
20	31709133	.	G	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:0:0:0:0,0:0,0:31,31:0,0	92:1:0:0:0,0:0,0:86,87:5,5
20	31929580	.	C	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:0:0:0:0,0:39,40:0,0:0,0	79:0:0:0:5,5:74,74:0,0:0,0
20	32187413	.	C	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||179|CBFA2T2|protein_coding|CODING|ENST00000417366|1|1),INTRON(MODIFIER||||263|CBFA2T2|protein_coding|CODING|ENST00000344201|1|1),INTRON(MODIFIER||||263|CBFA2T2|protein_coding|CODING|ENST00000397798|2|1),INTRON(MODIFIER||||575|CBFA2T2|protein_coding|CODING|ENST00000397800|1|1),INTRON(MODIFIER||||595|CBFA2T2|protein_coding|CODING|ENST00000342704|1|1),INTRON(MODIFIER||||604|CBFA2T2|protein_coding|CODING|ENST00000346541|2|1),INTRON(MODIFIER||||604|CBFA2T2|protein_coding|CODING|ENST00000375279|2|1),INTRON(MODIFIER||||78|CBFA2T2|protein_coding|CODING|ENST00000454955|2|1),INTRON(MODIFIER|||||CBFA2T2|nonsense_mediated_decay|CODING|ENST00000492345|2|1),INTRON(MODIFIER|||||CBFA2T2|processed_transcript|CODING|ENST00000471007|1|1),UPSTREAM(MODIFIER||||614|CBFA2T2|protein_coding|CODING|ENST00000359606||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:2:0:0:0,0:27,29:0,0:0,0	82:2:0:0:0,0:72,75:0,0:8,8
20	32397492	.	G	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP4-553F4.6|antisense|NON_CODING|ENST00000439444|1|1),INTRON(MODIFIER|||||RP4-553F4.6|antisense|NON_CODING|ENST00000443171|1|1),UPSTREAM(MODIFIER||||224|CHMP4B|protein_coding|CODING|ENST00000217402||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:0:0:0:0,0:0,0:31,33:0,0	87:2:0:0:5,7:0,0:80,82:0,0
20	32615319	.	T	G	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||170|RALY|protein_coding|CODING|ENST00000333552|1|1),INTRON(MODIFIER||||180|RALY|protein_coding|CODING|ENST00000448364|1|1),INTRON(MODIFIER||||290|RALY|protein_coding|CODING|ENST00000375114|1|1),INTRON(MODIFIER||||306|RALY|protein_coding|CODING|ENST00000246194|1|1),INTRON(MODIFIER||||88|RALY|protein_coding|CODING|ENST00000413297|1|1),UPSTREAM(MODIFIER||||236|RALY|protein_coding|CODING|ENST00000442805||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:1:0:0:0,0:0,0:0,0:37,38	75:2:0:0:0,1:0,0:5,5:68,69
20	33055508	.	G	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->GT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=DOWNSTREAM(MODIFIER|||||MIR644A|miRNA|NON_CODING|ENST00000385262||1),INTRON(MODIFIER||||752|ITCH|protein_coding|CODING|ENST00000535650|13|1),INTRON(MODIFIER||||862|ITCH|protein_coding|CODING|ENST00000374864|14|1),INTRON(MODIFIER||||903|ITCH|protein_coding|CODING|ENST00000262650|15|1),INTRON(MODIFIER|||||ITCH|processed_transcript|CODING|ENST00000483727|4|1),UPSTREAM(MODIFIER|||||ITCH|processed_transcript|CODING|ENST00000461661||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	22:0:0:0:1,1:0,0:21,21:0,0	35:6:0:0:0,0:0,0:22,24:7,12
20	34490992	rs73902933	A	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||PHF20|processed_transcript|CODING|ENST00000495338||1),INTRON(MODIFIER||||1012|PHF20|protein_coding|CODING|ENST00000374012|10|1),INTRON(MODIFIER||||272|PHF20|protein_coding|CODING|ENST00000439301|11|1),INTRON(MODIFIER||||542|PHF20|protein_coding|CODING|ENST00000339089|11|1),INTRON(MODIFIER||||548|PHF20|protein_coding|CODING|ENST00000374000|11|1),INTRON(MODIFIER|||||PHF20|processed_transcript|CODING|ENST00000481202|9|1);RSPOS=34490992;dbSNPBuildID=130;SSR=16;SAO=0;VP=050100080005040102000100;GENEINFO=PHF20:51230;WGT=1;VC=SNV;SLO;INT;ASP;VLD;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	14:0:1:0:14,14:0,0:0,0:0,0	67:4:1:0:46,48:2,2:0,0:15,19
20	35143640	.	A	C	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||453|DLGAP4|protein_coding|CODING|ENST00000340491|4|1),INTRON(MODIFIER||||989|DLGAP4|protein_coding|CODING|ENST00000373913|10|1),INTRON(MODIFIER||||989|DLGAP4|protein_coding|CODING|ENST00000401952|9|1),INTRON(MODIFIER||||992|DLGAP4|protein_coding|CODING|ENST00000339266|8|1),INTRON(MODIFIER||||992|DLGAP4|protein_coding|CODING|ENST00000373907|9|1),INTRON(MODIFIER|||||DLGAP4|nonsense_mediated_decay|CODING|ENST00000489701|4|1),INTRON(MODIFIER|||||DLGAP4|processed_transcript|CODING|ENST00000475894|4|1),INTRON(MODIFIER|||||DLGAP4|processed_transcript|CODING|ENST00000483381|2|1),INTRON(MODIFIER|||||DLGAP4|processed_transcript|CODING|ENST00000497862|2|1),INTRON(MODIFIER|||||DLGAP4|retained_intron|CODING|ENST00000478910|3|1),INTRON(MODIFIER|||||RP5-977B1.12|processed_transcript|NON_CODING|ENST00000433238|2|1),INTRON(MODIFIER|||||RP5-977B1.7|antisense|NON_CODING|ENST00000439595|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:1:0:0:33,34:0,0:0,0:0,0	70:0:0:0:62,62:8,8:0,0:0,0
20	35381861	.	T	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||140|DSN1|protein_coding|CODING|ENST00000438549||1),DOWNSTREAM(MODIFIER||||240|DSN1|protein_coding|CODING|ENST00000447406||1),DOWNSTREAM(MODIFIER||||303|DSN1|protein_coding|CODING|ENST00000449595||1),DOWNSTREAM(MODIFIER|||||DSN1|processed_transcript|CODING|ENST00000492703||1),INTRON(MODIFIER||||249|DSN1|protein_coding|CODING|ENST00000373734|9|1),INTRON(MODIFIER||||284|DSN1|protein_coding|CODING|ENST00000373740|10|1),INTRON(MODIFIER||||340|DSN1|protein_coding|CODING|ENST00000448110|9|1),INTRON(MODIFIER||||356|DSN1|protein_coding|CODING|ENST00000373745|10|1),INTRON(MODIFIER||||356|DSN1|protein_coding|CODING|ENST00000373750|10|1),INTRON(MODIFIER||||356|DSN1|protein_coding|CODING|ENST00000426836|10|1),INTRON(MODIFIER|||||DSN1|processed_transcript|CODING|ENST00000473615|11|1),INTRON(MODIFIER|||||DSN1|retained_intron|CODING|ENST00000480153|9|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:0:0:0:0,0:0,0:0,0:29,29	76:2:0:0:8,9:0,0:1,1:65,66
20	35641894	.	C	G	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1014|RBL1|protein_coding|CODING|ENST00000344359|19|1),INTRON(MODIFIER||||1068|RBL1|protein_coding|CODING|ENST00000373664|19|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:0:0:0:0,0:31,31:0,0:0,0	64:3:0:0:0,0:55,60:6,6:0,0
20	35697932	.	G	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1014|RBL1|protein_coding|CODING|ENST00000344359|2|1),INTRON(MODIFIER||||1068|RBL1|protein_coding|CODING|ENST00000373664|2|1),INTRON(MODIFIER|||||RBL1|nonsense_mediated_decay|CODING|ENST00000527999|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	48:2:0:0:0,1:1,1:44,48:1,1	65:5:2:0:0,0:8,9:52,70:0,0
20	35949158	.	G	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||56|MANBAL|protein_coding|CODING|ENST00000397150||1),DOWNSTREAM(MODIFIER||||85|MANBAL|protein_coding|CODING|ENST00000373605||1),DOWNSTREAM(MODIFIER||||85|MANBAL|protein_coding|CODING|ENST00000373606||1),DOWNSTREAM(MODIFIER||||85|MANBAL|protein_coding|CODING|ENST00000397151||1),DOWNSTREAM(MODIFIER||||85|MANBAL|protein_coding|CODING|ENST00000397152||1),DOWNSTREAM(MODIFIER||||85|MANBAL|protein_coding|CODING|ENST00000397156||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:1:0:0:0,0:0,0:29,30:0,0	91:5:0:0:6,9:0,0:80,84:0,0
20	36752280	.	T	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||687|TGM2|protein_coding|CODING|ENST00000361475||1),DOWNSTREAM(MODIFIER|||||TGM2|processed_transcript|CODING|ENST00000485572||1),DOWNSTREAM(MODIFIER|||||TGM2|retained_intron|CODING|ENST00000469269||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	23:1:0:0:0,0:0,0:0,0:22,29	48:3:0:0:0,1:7,18:0,0:38,45
20	37118890	.	T	C	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1273|RALGAPB|protein_coding|CODING|ENST00000397038|2|1),INTRON(MODIFIER||||1491|RALGAPB|protein_coding|CODING|ENST00000397042|2|1),INTRON(MODIFIER||||1494|RALGAPB|protein_coding|CODING|ENST00000262879|2|1),INTRON(MODIFIER||||1494|RALGAPB|protein_coding|CODING|ENST00000397040|2|1),INTRON(MODIFIER||||477|RALGAPB|protein_coding|CODING|ENST00000537204|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:1:0:0:0,0:0,0:0,0:31,33	78:0:0:0:0,0:11,11:0,0:67,67
20	38265819	.	G	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:0:0:0:0,0:0,0:30,30:0,0	74:0:0:0:0,0:0,0:69,69:5,5
20	38712928	.	A	G	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:0:0:0:32,33:0,0:0,0:0,0	69:1:0:0:62,63:0,0:6,6:0,0
20	39183761	.	G	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	25:0:0:0:0,0:0,0:25,25:0,0	71:1:0:0:8,8:0,1:62,62:0,0
20	39797418	.	A	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||PLCG1|processed_transcript|CODING|ENST00000465571||1),DOWNSTREAM(MODIFIER|||||PLCG1|processed_transcript|CODING|ENST00000473632||1),DOWNSTREAM(MODIFIER|||||PLCG1|retained_intron|CODING|ENST00000470528||1),DOWNSTREAM(MODIFIER|||||PLCG1|retained_intron|CODING|ENST00000492148||1),EXON(MODIFIER|||||PLCG1|retained_intron|CODING|ENST00000477870|2|1),EXON(MODIFIER|||||PLCG1|retained_intron|CODING|ENST00000483175|1|1),SYNONYMOUS_CODING(LOW|SILENT|aaA/aaG|K797|1290|PLCG1|protein_coding|CODING|ENST00000373271|21|1),SYNONYMOUS_CODING(LOW|SILENT|aaA/aaG|K797|1291|PLCG1|protein_coding|CODING|ENST00000244007|22|1),SYNONYMOUS_CODING(LOW|SILENT|aaA/aaG|K797|1291|PLCG1|protein_coding|CODING|ENST00000373272|21|1),UPSTREAM(MODIFIER|||||PLCG1|processed_transcript|CODING|ENST00000461641||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:1:0:0:30,31:0,0:0,0:0,0	79:0:0:0:72,72:0,0:7,7:0,0
20	41465656	.	G	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1431|PTPRT|protein_coding|CODING|ENST00000373201|2|1),INTRON(MODIFIER||||1440|PTPRT|protein_coding|CODING|ENST00000373190|2|1),INTRON(MODIFIER||||1441|PTPRT|protein_coding|CODING|ENST00000373187|2|1),INTRON(MODIFIER||||1444|PTPRT|protein_coding|CODING|ENST00000373193|2|1),INTRON(MODIFIER||||1450|PTPRT|protein_coding|CODING|ENST00000356100|2|1),INTRON(MODIFIER||||1451|PTPRT|protein_coding|CODING|ENST00000373184|2|1),INTRON(MODIFIER||||1463|PTPRT|protein_coding|CODING|ENST00000373198|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	28:1:0:0:0,0:0,0:27,28:0,0	59:0:0:0:4,4:1,1:54,54:0,0
20	41552802	.	A	C	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1431|PTPRT|protein_coding|CODING|ENST00000373201|1|1),INTRON(MODIFIER||||1440|PTPRT|protein_coding|CODING|ENST00000373190|1|1),INTRON(MODIFIER||||1441|PTPRT|protein_coding|CODING|ENST00000373187|1|1),INTRON(MODIFIER||||1444|PTPRT|protein_coding|CODING|ENST00000373193|1|1),INTRON(MODIFIER||||1450|PTPRT|protein_coding|CODING|ENST00000356100|1|1),INTRON(MODIFIER||||1451|PTPRT|protein_coding|CODING|ENST00000373184|1|1),INTRON(MODIFIER||||1463|PTPRT|protein_coding|CODING|ENST00000373198|1|1),INTRON(MODIFIER|||||PTPRT|processed_transcript|CODING|ENST00000485499|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	42:2:0:0:40,43:0,0:0,0:0,0	81:1:0:0:75,76:5,5:0,0:0,0
20	42888819	.	T	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||147|GDAP1L1|protein_coding|CODING|ENST00000372952||1),INTRON(MODIFIER||||175|GDAP1L1|protein_coding|CODING|ENST00000537864|1|1),INTRON(MODIFIER||||287|GDAP1L1|protein_coding|CODING|ENST00000438466|2|1),INTRON(MODIFIER||||367|GDAP1L1|protein_coding|CODING|ENST00000342560|3|1),UPSTREAM(MODIFIER||||123|GDAP1L1|protein_coding|CODING|ENST00000447658||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	27:0:0:0:0,0:0,0:0,0:27,27	81:2:0:0:6,6:0,0:0,0:73,76
20	43883480	.	A	G	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER||||132|SLPI|protein_coding|CODING|ENST00000338380||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	41:1:0:0:40,41:0,0:0,0:0,0	79:0:0:0:73,73:0,0:6,6:0,0
20	44640206	.	G	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||RP11-465L10.10|antisense|NON_CODING|ENST00000535913||1),INTRON(MODIFIER||||707|MMP9|protein_coding|CODING|ENST00000372330|5|1),UPSTREAM(MODIFIER|||||AL162458.1|pseudogene|NON_CODING|ENST00000366171||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	27:0:0:0:0,0:0,0:27,27:0,0	57:1:0:0:5,5:0,0:51,52:0,0
20	46228928	.	A	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1350|NCOA3|protein_coding|CODING|ENST00000341724|2|1),INTRON(MODIFIER||||1415|NCOA3|protein_coding|CODING|ENST00000371997|2|1),INTRON(MODIFIER||||1420|NCOA3|protein_coding|CODING|ENST00000340189|2|1),INTRON(MODIFIER||||1420|NCOA3|protein_coding|CODING|ENST00000372004|2|1),INTRON(MODIFIER||||1424|NCOA3|protein_coding|CODING|ENST00000371998|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:2:0:0:32,34:0,0:0,0:0,0	81:3:0:0:68,70:0,1:0,0:10,12
20	46744860	.	A	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:0:0:0:39,39:0,0:0,0:0,0	76:1:0:0:68,71:1,1:0,0:6,6
20	46744889	.	T	C	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:0:0:0:0,0:0,0:0,0:36,37	73:0:0:0:0,0:8,10:0,0:65,66
20	47090953	.	G	T	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:0:0:0:0,0:1,1:33,33:0,0	64:0:0:0:0,0:0,0:56,56:8,8
20	47130631	.	T	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||RP5-991B18.1|lincRNA|NON_CODING|ENST00000457536||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:1:0:0:0,0:1,2:0,0:36,36	72:0:0:0:0,0:1,1:4,4:67,67
20	47130660	.	T	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||RP5-991B18.1|lincRNA|NON_CODING|ENST00000457536||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:0:0:0:0,0:1,1:0,0:38,38	66:0:0:0:0,0:7,7:0,0:59,59
20	47247064	.	C	T	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1561|PREX1|protein_coding|CODING|ENST00000396220|35|1),INTRON(MODIFIER||||1659|PREX1|protein_coding|CODING|ENST00000371941|36|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:1:0:0:0,0:28,29:0,0:0,0	89:0:0:0:0,0:74,74:0,0:15,15
20	47531916	.	A	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:0:0:0:30,33:0,0:0,0:0,0	85:3:0:0:75,77:0,1:7,7:0,0
20	47693177	.	A	C	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||754|CSE1L|protein_coding|CODING|ENST00000542325|9|1),INTRON(MODIFIER||||915|CSE1L|protein_coding|CODING|ENST00000396192|10|1),INTRON(MODIFIER||||971|CSE1L|protein_coding|CODING|ENST00000262982|12|1),INTRON(MODIFIER|||||CSE1L|processed_transcript|CODING|ENST00000476393|6|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	28:0:0:0:28,30:0,0:0,0:0,0	63:2:0:0:52,56:9,10:0,0:0,0
20	47875138	.	T	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1270|ZNFX1|protein_coding|CODING|ENST00000371754|7|1),INTRON(MODIFIER||||1918|ZNFX1|protein_coding|CODING|ENST00000371752|7|1),INTRON(MODIFIER||||1918|ZNFX1|protein_coding|CODING|ENST00000396105|7|1),INTRON(MODIFIER||||706|ZNFX1|protein_coding|CODING|ENST00000455070|5|1),INTRON(MODIFIER||||933|ZNFX1|protein_coding|CODING|ENST00000371744|7|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:1:0:0:0,0:0,0:0,0:32,34	80:0:0:0:0,0:10,10:0,0:70,70
20	47983474	rs144199693	G	A	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||858|KCNB1|protein_coding|CODING|ENST00000371741||1),EXON(MODIFIER|||||RP4-791K14.2|sense_overlapping|NON_CODING|ENST00000562732|1|1);RSPOS=47983474;GMAF=0.0014;dbSNPBuildID=134;SSR=0;SAO=0;VP=050000000005000014000100;WGT=1;VC=SNV;ASP;KGPhase1;KGPROD	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:1:0:0:0,0:0,0:38,39:0,0	81:2:0:0:9,9:0,0:70,72:0,0
20	51458711	.	G	T	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:0:0:0:0,0:0,0:36,37:0,0	87:1:1:0:0,0:0,0:81,82:5,5
20	51492690	.	A	C	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:0:0:0:37,37:0,0:0,0:0,0	84:1:0:0:79,82:4,4:0,0:0,0
20	51852376	.	G	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1031|TSHZ2|protein_coding|CODING|ENST00000329613|1|1),INTRON(MODIFIER||||1034|TSHZ2|protein_coding|CODING|ENST00000371497|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:1:0:0:0,0:0,0:28,29:0,0	90:1:0:0:1,1:0,0:83,84:5,5
20	52326244	rs66737021	C	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=52326244;dbSNPBuildID=130;SSR=0;SAO=0;VP=050100000015000102000100;WGT=1;VC=SNV;SLO;OTH;ASP;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:1:0:0:0,0:33,34:0,0:0,0	57:1:0:0:0,0:52,53:0,0:4,4
20	54855700	rs201403235	C	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=54855700;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	41:0:0:0:0,0:41,41:0,0:0,0	80:2:0:0:0,0:73,76:0,0:5,7
20	55649586	.	G	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:1:0:0:0,0:0,0:28,29:0,0	81:0:0:0:0,0:0,0:76,76:5,5
20	56025614	.	T	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:2:0:0:0,0:0,0:1,1:31,33	86:2:0:0:0,0:4,6:0,0:80,80
20	56409444	.	T	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:0:0:0:0,0:1,1:2,2:32,32	71:2:0:0:1,1:11,12:3,4:54,55
20	56656790	.	A	G	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:0:0:0:36,36:0,0:0,0:0,0	97:0:0:0:86,86:0,0:11,11:0,0
20	57271959	.	T	C	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||STX16-NPEPL1|processed_transcript|NON_CODING|ENST00000413559||1),INTRON(MODIFIER||||475|NPEPL1|protein_coding|CODING|ENST00000525817|4|1),INTRON(MODIFIER||||495|NPEPL1|protein_coding|CODING|ENST00000525967|4|1),INTRON(MODIFIER||||523|NPEPL1|protein_coding|CODING|ENST00000356091|3|1),INTRON(MODIFIER|||||NPEPL1|retained_intron|CODING|ENST00000527587|2|1),INTRON(MODIFIER|||||NPEPL1|retained_intron|CODING|ENST00000529976|2|1),INTRON(MODIFIER|||||STX16-NPEPL1|nonsense_mediated_decay|NON_CODING|ENST00000530122|13|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:0:0:0:0,0:0,0:0,0:33,33	50:0:0:0:0,0:4,4:0,0:46,46
20	57555701	.	A	G	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER||||590|TH1L|protein_coding|CODING|ENST00000344018||1),UPSTREAM(MODIFIER|||||TH1L|nonsense_mediated_decay|CODING|ENST00000460601||1),UPSTREAM(MODIFIER|||||TH1L|retained_intron|CODING|ENST00000464363||1),UPSTREAM(MODIFIER|||||TH1L|retained_intron|CODING|ENST00000471621||1),UPSTREAM(MODIFIER|||||TH1L|retained_intron|CODING|ENST00000482747||1),UPSTREAM(MODIFIER|||||TH1L|retained_intron|CODING|ENST00000492016||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	28:0:0:0:28,29:0,0:0,0:0,0	82:3:0:0:66,67:0,0:13,17:0,0
20	57555707	.	C	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER||||590|TH1L|protein_coding|CODING|ENST00000344018||1),UPSTREAM(MODIFIER|||||TH1L|nonsense_mediated_decay|CODING|ENST00000460601||1),UPSTREAM(MODIFIER|||||TH1L|retained_intron|CODING|ENST00000464363||1),UPSTREAM(MODIFIER|||||TH1L|retained_intron|CODING|ENST00000471621||1),UPSTREAM(MODIFIER|||||TH1L|retained_intron|CODING|ENST00000482747||1),UPSTREAM(MODIFIER|||||TH1L|retained_intron|CODING|ENST00000492016||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	28:0:0:0:0,0:28,29:0,0:0,0	83:1:0:0:0,0:75,77:0,0:7,8
20	58709984	.	G	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP5-1043L13.1|processed_transcript|NON_CODING|ENST00000427691|4|1),INTRON(MODIFIER|||||RP5-1043L13.1|processed_transcript|NON_CODING|ENST00000431181|7|1),INTRON(MODIFIER|||||RP5-1043L13.1|processed_transcript|NON_CODING|ENST00000458422|1|1),UPSTREAM(MODIFIER|||||RP5-1043L13.1|processed_transcript|NON_CODING|ENST00000432910||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:1:0:0:0,1:0,0:28,28:0,0	72:1:0:0:1,2:0,0:63,64:7,8
20	60368874	.	G	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||842|CDH4|protein_coding|CODING|ENST00000543233|3|1),INTRON(MODIFIER||||916|CDH4|protein_coding|CODING|ENST00000360469|4|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	27:1:0:0:0,0:0,0:26,27:0,0	48:3:0:0:5,5:0,1:40,47:0,0
20	60495008	.	C	T	.	PASS	NT=ref;QSS=23;QSS_NT=23;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||842|CDH4|protein_coding|CODING|ENST00000543233|8|1),INTRON(MODIFIER||||916|CDH4|protein_coding|CODING|ENST00000360469|9|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	84:2:0:0:0,0:80,96:0,0:2,2	177:11:0:0:0,1:156,205:3,3:7,13
20	60495846	rs62205040	A	G	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||842|CDH4|protein_coding|CODING|ENST00000543233|8|1),INTRON(MODIFIER||||916|CDH4|protein_coding|CODING|ENST00000360469|9|1);RSPOS=60495846;dbSNPBuildID=129;SSR=0;SAO=0;VP=050000080001000002000100;GENEINFO=CDH4:1002;WGT=1;VC=SNV;INT;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:1:0:0:29,30:0,0:0,0:0,0	62:6:0:0:48,53:0,0:8,10:0,0
20	60553745	.	C	G	.	PASS	NT=ref;QSS=23;QSS_NT=23;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1085|TAF4|protein_coding|CODING|ENST00000252996|14|1),INTRON(MODIFIER||||949|TAF4|protein_coding|CODING|ENST00000436129|16|1),INTRON(MODIFIER|||||TAF4|processed_transcript|CODING|ENST00000474089|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:0:0:0:0,0:36,41:0,0:0,0	70:3:0:0:0,0:55,61:12,14:0,0
20	60553750	.	G	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1085|TAF4|protein_coding|CODING|ENST00000252996|14|1),INTRON(MODIFIER||||949|TAF4|protein_coding|CODING|ENST00000436129|16|1),INTRON(MODIFIER|||||TAF4|processed_transcript|CODING|ENST00000474089|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:0:0:0:0,0:1,1:37,42:0,0	74:5:1:0:0,0:6,8:63,71:0,0
20	61190085	rs60050376	G	A	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=61190085;GMAF=0.0009;dbSNPBuildID=129;SSR=0;SAO=0;VP=050000000001000016000100;WGT=1;VC=SNV;KGPhase1;KGPROD;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	41:2:0:0:0,0:0,0:39,43:0,0	71:2:0:0:4,4:0,0:65,69:0,0
20	61693346	.	A	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:2:0:0:30,30:1,3:0,0:0,0	63:3:0:0:52,56:0,0:6,6:2,3
20	61700099	rs11905124	A	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=AA->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=61700099;GMAF=0.1635;dbSNPBuildID=120;SSR=0;SAO=0;VP=050000080005000116000100;GENEINFO=LOC63930:63930;WGT=1;VC=SNV;INT;ASP;GNO;KGPhase1;KGPROD;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:4:0:0:29,34:0,0:0,1:0,1	70:2:0:0:60,65:1,3:7,8:0,1
20	61715223	.	C	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:1:0:0:0,0:34,36:0,0:0,0	66:1:0:0:0,0:61,64:0,0:4,4
20	61715234	.	G	T	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:0:0:0:0,0:0,0:38,39:0,0	68:0:0:0:0,0:0,0:63,65:5,5
20	62024047	rs3928108	G	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=62024047;dbSNPBuildID=108;SSR=0;SAO=0;VP=050100000201000002000100;WGT=1;VC=SNV;SLO;REF;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	23:1:0:0:0,0:0,0:22,25:0,0	37:1:0:0:0,1:6,7:30,33:0,0
20	62077098	rs74179803	G	A	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||393|KCNQ2|protein_coding|CODING|ENST00000344425|2|1),INTRON(MODIFIER||||436|KCNQ2|protein_coding|CODING|ENST00000370221|2|1),INTRON(MODIFIER||||615|KCNQ2|protein_coding|CODING|ENST00000370222|2|1),INTRON(MODIFIER||||841|KCNQ2|protein_coding|CODING|ENST00000430658|2|1),INTRON(MODIFIER||||842|KCNQ2|protein_coding|CODING|ENST00000370226|2|1),INTRON(MODIFIER||||844|KCNQ2|protein_coding|CODING|ENST00000360480|2|1),INTRON(MODIFIER||||854|KCNQ2|protein_coding|CODING|ENST00000357249|2|1),INTRON(MODIFIER||||868|KCNQ2|protein_coding|CODING|ENST00000344462|2|1),INTRON(MODIFIER||||872|KCNQ2|protein_coding|CODING|ENST00000359125|2|1),INTRON(MODIFIER||||872|KCNQ2|protein_coding|CODING|ENST00000359689|2|1),INTRON(MODIFIER||||880|KCNQ2|protein_coding|CODING|ENST00000354587|2|1),INTRON(MODIFIER||||880|KCNQ2|protein_coding|CODING|ENST00000370224|2|1),UPSTREAM(MODIFIER|||||RP11-358D14.2|antisense|NON_CODING|ENST00000436263||1);RSPOS=62077098;GMAF=0.3347;dbSNPBuildID=130;SSR=0;SAO=0;VP=050100080001040116000100;GENEINFO=KCNQ2:3785;WGT=1;VC=SNV;SLO;INT;VLD;GNO;KGPhase1;KGPROD;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:2:0:0:0,0:1,1:33,38:0,0	88:4:0:0:10,12:0,1:74,84:0,0
20	62736290	rs147961112	A	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||333|NPBWR2|protein_coding|CODING|ENST00000369768||1),DOWNSTREAM(MODIFIER||||370|OPRL1|protein_coding|CODING|ENST00000336866||1),DOWNSTREAM(MODIFIER||||370|OPRL1|protein_coding|CODING|ENST00000349451||1),DOWNSTREAM(MODIFIER||||370|OPRL1|protein_coding|CODING|ENST00000355631||1),INTERGENIC(MODIFIER||||||||||1);RSPOS=62736290;GMAF=0.1039;dbSNPBuildID=134;SSR=0;SAO=0;VP=050000000005000014000100;WGT=1;VC=SNV;ASP;KGPhase1;KGPROD	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	27:1:0:0:26,27:0,0:0,0:0,0	73:4:0:0:60,66:1,1:8,8:0,0
20	62802237	rs28556630	T	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1121|MYT1|protein_coding|CODING|ENST00000328439|1|1),INTRON(MODIFIER||||1148|MYT1|protein_coding|CODING|ENST00000536311|1|1),INTRON(MODIFIER||||591|MYT1|protein_coding|CODING|ENST00000360149|1|1);RSPOS=62802237;dbSNPBuildID=125;SSR=0;SAO=0;VP=050000080001000002000100;GENEINFO=MYT1:4661;WGT=1;VC=SNV;INT;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	13:0:0:0:0,0:0,0:0,0:13,14	46:2:0:0:0,0:0,0:10,12:34,38
20	62865990	.	C	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1121|MYT1|protein_coding|CODING|ENST00000328439|19|1),INTRON(MODIFIER||||1148|MYT1|protein_coding|CODING|ENST00000536311|19|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:3:0:0:0,0:27,30:0,1:0,0	80:9:0:0:6,8:65,79:0,0:0,0
21	9432581	.	G	T	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	84:1:0:0:0,0:0,0:83,85:0,0	152:2:0:0:0,0:0,1:141,145:9,12
21	9575376	.	C	T	.	PASS	NT=ref;QSS=35;QSS_NT=35;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	72:0:0:0:0,0:72,86:0,0:0,1	165:1:0:0:0,0:150,205:0,0:14,20
21	9651069	rs77458903	A	T	.	PASS	NT=ref;QSS=25;QSS_NT=25;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=9651069;dbSNPBuildID=131;SSR=0;SAO=0;VP=050000000001000102000100;WGT=1;VC=SNV;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	52:1:0:0:51,52:0,0:0,0:0,0	138:1:0:0:131,132:0,0:0,0:6,10
21	9653390	.	G	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	99:3:0:0:1,4:1,1:91,98:3,4	226:14:0:0:8,19:0,2:200,208:4,7
21	9670458	.	A	C	.	PASS	NT=ref;QSS=26;QSS_NT=26;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	87:0:0:0:87,89:0,0:0,0:0,0	207:3:0:0:194,198:8,10:2,2:0,0
21	9685325	.	G	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=DOWNSTREAM(MODIFIER|||||CR381670.1|miRNA|NON_CODING|ENST00000459169||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	44:3:0:0:0,1:0,0:41,51:0,0	77:2:0:0:8,10:0,0:66,80:1,2
21	9699234	.	G	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->GT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	91:1:0:0:0,1:1,1:89,124:0,1	205:4:0:0:0,1:1,1:192,265:8,11
21	9704930	.	A	T	.	PASS	NT=ref;QSS=26;QSS_NT=26;SGT=AA->AT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	62:1:0:0:60,71:1,1:0,0:0,1	181:0:0:0:166,201:2,2:0,0:13,13
21	9733593	rs75624913	A	G	.	PASS	NT=ref;QSS=27;QSS_NT=27;SGT=AA->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=9733593;dbSNPBuildID=131;SSR=0;SAO=0;VP=050000000001000102000100;WGT=1;VC=SNV;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	62:1:0:0:61,62:0,0:0,1:0,0	138:1:0:0:129,131:0,0:8,10:0,0
21	9860783	rs4587028	T	C	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=TT->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=9860783;dbSNPBuildID=111;SSR=0;SAO=0;VP=050000000001000002000100;WGT=1;VC=SNV;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:1:0:0:0,0:0,1:0,0:36,59	131:0:0:0:0,0:8,8:0,0:123,157
21	9862581	.	G	A	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	86:1:0:0:0,2:0,0:85,91:0,0	227:1:0:0:8,15:0,0:217,239:1,1
21	9862593	.	A	C	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	87:1:0:0:86,93:0,3:0,0:0,0	232:2:0:0:222,245:8,16:0,0:0,0
21	9865240	.	T	C	.	PASS	NT=ref;QSS=36;QSS_NT=36;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	90:0:0:0:0,0:0,0:1,1:89,89	180:2:0:0:0,0:7,13:1,2:170,178
21	9911450	.	G	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||MAFIPL|processed_transcript|NON_CODING|ENST00000416067|2|1),INTRON(MODIFIER|||||MAFIPL|transcribed_unprocessed_pseudogene|NON_CODING|ENST00000559466|1|1),INTRON(MODIFIER|||||MAFIPL|unprocessed_pseudogene|NON_CODING|ENST00000400754|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:0:0:0:0,0:0,0:31,42:0,0	65:3:0:0:0,0:0,0:57,67:5,12
21	9911499	.	A	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||MAFIPL|processed_transcript|NON_CODING|ENST00000416067|2|1),INTRON(MODIFIER|||||MAFIPL|transcribed_unprocessed_pseudogene|NON_CODING|ENST00000559466|1|1),INTRON(MODIFIER|||||MAFIPL|unprocessed_pseudogene|NON_CODING|ENST00000400754|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	28:0:0:0:28,40:0,0:0,0:0,0	54:3:0:0:44,57:0,0:0,1:7,11
21	9911534	.	C	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||MAFIPL|processed_transcript|NON_CODING|ENST00000416067|2|1),INTRON(MODIFIER|||||MAFIPL|transcribed_unprocessed_pseudogene|NON_CODING|ENST00000559466|1|1),INTRON(MODIFIER|||||MAFIPL|unprocessed_pseudogene|NON_CODING|ENST00000400754|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	27:0:0:0:0,0:27,32:0,0:0,0	51:1:0:0:0,0:44,54:0,0:6,8
21	9911538	.	G	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||MAFIPL|processed_transcript|NON_CODING|ENST00000416067|2|1),INTRON(MODIFIER|||||MAFIPL|transcribed_unprocessed_pseudogene|NON_CODING|ENST00000559466|1|1),INTRON(MODIFIER|||||MAFIPL|unprocessed_pseudogene|NON_CODING|ENST00000400754|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	28:0:0:0:0,0:0,0:28,33:0,0	53:1:0:0:6,8:0,0:46,56:0,0
21	9949606	.	T	C	.	PASS	NT=ref;QSS=30;QSS_NT=30;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||MAFIPL|processed_transcript|NON_CODING|ENST00000416067|2|1),INTRON(MODIFIER|||||MAFIPL|unprocessed_pseudogene|NON_CODING|ENST00000400754|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:2:0:0:0,0:0,1:0,0:36,57	67:1:0:0:0,0:13,19:0,0:53,77
21	10017862	.	A	T	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:0:0:0:34,42:0,0:0,0:0,0	57:0:0:0:50,63:0,0:0,0:7,8
21	10134747	rs76205825	G	A	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=10134747;dbSNPBuildID=131;SSR=0;SAO=0;VP=050000000001000102000100;WGT=1;VC=SNV;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:0:0:0:0,0:0,0:34,38:0,1	103:3:0:0:9,11:0,0:88,105:3,3
21	10161898	.	G	A	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	101:2:0:0:2,2:0,1:97,115:0,0	223:2:0:0:19,20:0,0:201,236:1,1
21	10161941	.	C	T	.	PASS	NT=ref;QSS=29;QSS_NT=29;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	61:1:0:0:0,0:59,75:1,2:0,0	147:1:0:0:0,0:129,159:1,2:16,16
21	10163138	.	A	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=AA->AT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:0:0:0:33,35:0,0:0,0:0,1	87:0:0:0:73,80:0,0:0,0:14,16
21	10163165	.	T	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->GT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:0:0:0:0,0:0,0:0,1:40,42	104:1:0:0:0,0:0,0:14,17:89,97
21	10163178	.	C	A	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	43:0:0:0:0,0:43,44:0,0:0,0	103:1:0:0:8,10:94,100:0,0:0,0
21	10163183	.	G	A	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=GG->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:0:0:0:0,1:0,0:39,39:0,0	100:1:0:0:15,18:0,0:84,89:0,0
21	10193417	.	G	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	47:0:0:0:0,0:0,0:47,50:0,0	113:4:0:0:0,0:7,10:102,111:0,2
21	10194032	.	G	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	90:0:0:0:0,0:2,2:88,91:0,0	186:4:0:0:0,0:8,9:174,194:0,0
21	10839190	rs202168204	A	C	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=10839190;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	95:4:9:0:88,248:0,13:0,2:3,10	245:34:16:0:202,559:8,38:1,7:0,12
21	10840122	rs62210484	A	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=AA->AT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=10840122;dbSNPBuildID=129;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	59:2:6:0:57,72:0,0:0,1:0,5	179:4:7:0:169,205:0,0:0,0:6,12
21	10879352	.	C	A	.	PASS	NT=ref;QSS=44;QSS_NT=44;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	92:1:0:0:0,0:91,92:0,0:0,0	229:1:0:0:7,7:221,222:0,0:0,0
21	11030893	.	C	T	.	PASS	NT=ref;QSS=24;QSS_NT=24;SGT=CC->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER|||||BAGE2|processed_transcript|NON_CODING|ENST00000470054|6|1),INTRON(MODIFIER|||||BAGE2|transcribed_unprocessed_pseudogene|NON_CODING|ENST00000496773|4|1),UPSTREAM(MODIFIER|||||TPTE|processed_transcript|CODING|ENST00000415664||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	66:2:0:0:0,1:64,77:0,0:0,1	140:4:0:0:0,0:128,151:0,0:8,11
21	11067043	rs200988948	G	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->GT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER|||||BAGE2|processed_transcript|NON_CODING|ENST00000470054|2|1),INTRON(MODIFIER|||||BAGE2|processed_transcript|NON_CODING|ENST00000474011|2|1);RSPOS=11067043;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000080005000002000100;WGT=1;VC=SNV;INT;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	51:1:0:0:0,0:0,0:50,53:0,0	132:0:0:0:0,0:0,0:127,139:5,5
21	11120024	rs4510309	G	T	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=11120024;dbSNPBuildID=111;SSR=0;SAO=0;VP=050000000001000002000100;WGT=1;VC=SNV;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	83:3:0:0:0,0:0,0:79,89:1,2	230:3:0:0:0,0:0,0:214,226:13,14
21	11127356	.	C	A	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=CC->AC;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	81:7:0:0:1,3:73,110:0,3:0,0	173:12:0:0:7,10:153,215:1,5:0,6
21	11129439	rs74448685	T	A	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=TT->AT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=11129439;dbSNPBuildID=131;SSR=0;SAO=0;VP=050000000001040102000100;WGT=1;VC=SNV;VLD;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	72:6:0:0:1,3:0,1:0,1:65,77	185:13:0:0:16,24:1,3:0,0:155,182
21	14392065	rs201687937	A	T	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=AA->AT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||AP001464.4|lincRNA|NON_CODING|ENST00000457565||1);RSPOS=14392065;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	52:0:0:0:51,52:1,1:0,0:0,1	122:0:0:0:112,116:0,0:0,0:10,17
21	14397385	.	C	T	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=CC->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	65:1:0:0:0,0:64,65:0,0:0,1	174:1:0:0:1,1:163,167:1,1:8,10
21	14397386	.	T	G	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=TT->GT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	65:1:0:0:0,0:0,0:0,2:64,65	172:1:0:0:0,0:0,0:8,10:163,167
21	14503673	.	G	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	44:2:0:0:0,1:0,0:42,45:0,0	68:1:1:0:6,8:0,0:61,65:0,0
21	14525727	rs183970258	A	G	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=14525727;dbSNPBuildID=135;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:0:0:0:36,39:0,0:0,0:0,0	103:2:0:0:87,93:0,0:14,17:0,0
21	14525799	rs200757712	T	C	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=14525799;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:0:0:0:0,0:0,0:0,0:38,43	117:1:0:0:0,0:7,10:0,0:109,115
21	14567598	rs201917797	C	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=14567598;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:0:0:0:0,0:31,31:0,0:0,0	65:1:0:0:0,0:56,57:0,0:8,18
21	15213606	.	A	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=AA->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=DOWNSTREAM(MODIFIER|||||CYP4F29P|processed_transcript|NON_CODING|ENST00000428301||1),DOWNSTREAM(MODIFIER|||||ZNF114P1|processed_pseudogene|NON_CODING|ENST00000453500||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	43:4:0:0:38,40:0,0:1,4:0,1	79:2:0:0:68,69:1,1:8,19:0,0
21	15257602	.	T	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=TT->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:0:0:0:0,0:0,1:0,0:34,40	77:1:0:0:0,0:6,11:0,0:70,94
21	15257616	rs113950831	C	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=15257616;GMAF=0.1186;dbSNPBuildID=132;SSR=0;SAO=0;VP=050000000005000016000100;WGT=1;VC=SNV;ASP;KGPhase1;KGPROD;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:1:0:0:0,0:34,38:0,0:0,1	80:1:0:0:0,0:74,98:0,0:5,10
21	15257632	.	T	C	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:3:0:0:0,0:0,1:0,0:37,46	81:2:0:0:0,0:5,10:0,0:74,96
21	15257663	rs200574071	C	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->CG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=15257663;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	46:2:0:0:0,0:43,51:0,1:1,1	81:1:0:0:0,0:75,97:5,10:0,0
21	15257677	rs201465955	G	A	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=GG->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=15257677;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	43:1:0:0:0,1:0,0:41,46:1,1	84:2:0:0:5,9:0,0:76,98:1,1
21	15257707	rs200265753	A	G	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=15257707;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:1:0:0:34,40:0,0:0,1:0,0	85:1:0:0:79,94:0,1:5,8:0,0
21	17186833	.	T	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1055|USP25|protein_coding|CODING|ENST00000285679|9|1),INTRON(MODIFIER||||1087|USP25|protein_coding|CODING|ENST00000285681|9|1),INTRON(MODIFIER||||1125|USP25|protein_coding|CODING|ENST00000400183|9|1),INTRON(MODIFIER||||450|USP25|protein_coding|CODING|ENST00000351097|7|1),INTRON(MODIFIER|||||USP25|processed_transcript|CODING|ENST00000547201|7|1),INTRON(MODIFIER|||||USP25|processed_transcript|CODING|ENST00000549362|5|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:0:0:0:0,0:0,0:0,0:30,37	69:0:0:0:5,7:0,0:0,0:64,75
21	19885734	.	C	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:0:0:0:0,0:29,29:0,0:0,0	76:0:0:0:0,0:67,67:0,0:9,9
21	21018125	.	G	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	27:0:0:0:0,0:0,0:27,27:0,0	91:1:0:0:5,5:0,0:85,87:0,0
21	26253577	.	C	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||AP000235.2|lincRNA|NON_CODING|ENST00000441009|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:0:0:0:0,0:31,32:0,0:0,0	83:0:0:0:1,1:76,76:0,0:6,6
21	28249142	.	C	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:1:0:0:0,1:28,28:0,0:0,0	79:0:0:0:1,1:72,72:0,0:6,6
21	28999479	.	T	A	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	63:3:0:0:1,3:0,0:0,0:59,79	149:6:0:0:7,13:0,0:0,0:136,175
21	31407493	.	A	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=AA->AC;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	26:3:1:0:23,25:0,2:0,0:0,0	53:4:0:0:34,35:13,15:0,0:2,3
21	32786422	.	C	A	.	PASS	NT=ref;QSS=24;QSS_NT=24;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1591|TIAM1|protein_coding|CODING|ENST00000286827|2|1),INTRON(MODIFIER|||||TIAM1|processed_transcript|CODING|ENST00000469412|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	48:1:0:0:0,0:47,48:0,0:0,0	61:0:0:0:5,5:56,56:0,0:0,0
21	33157649	.	C	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	66:13:0:0:0,0:53,125:0,2:0,3	130:10:0:0:0,0:112,244:3,4:5,16
21	33808109	rs79100831	T	C	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||FAM176C|processed_transcript|CODING|ENST00000481638||1),INTRON(MODIFIER||||152|FAM176C|protein_coding|CODING|ENST00000412833|1|1),INTRON(MODIFIER||||393|FAM176C|protein_coding|CODING|ENST00000401402|1|1),INTRON(MODIFIER||||438|FAM176C|protein_coding|CODING|ENST00000382699|1|1),INTRON(MODIFIER||||441|FAM176C|protein_coding|CODING|ENST00000300255|1|1),INTRON(MODIFIER|||||FAM176C|nonsense_mediated_decay|CODING|ENST00000435323|1|1),INTRON(MODIFIER|||||FAM176C|nonsense_mediated_decay|CODING|ENST00000437338|1|1),INTRON(MODIFIER|||||FAM176C|nonsense_mediated_decay|CODING|ENST00000457807|1|1),INTRON(MODIFIER|||||FAM176C|processed_transcript|CODING|ENST00000459833|1|1),INTRON(MODIFIER|||||FAM176C|retained_intron|CODING|ENST00000469079|1|1);RSPOS=33808109;dbSNPBuildID=131;SSR=0;SAO=0;VP=050000080005000002000100;GENEINFO=C21orf63:59271;WGT=1;VC=SNV;INT;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:0:0:0:0,0:0,0:0,0:33,33	76:2:0:0:0,0:11,16:0,0:63,65
21	33808131	rs76754769	G	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||FAM176C|processed_transcript|CODING|ENST00000481638||1),INTRON(MODIFIER||||152|FAM176C|protein_coding|CODING|ENST00000412833|1|1),INTRON(MODIFIER||||393|FAM176C|protein_coding|CODING|ENST00000401402|1|1),INTRON(MODIFIER||||438|FAM176C|protein_coding|CODING|ENST00000382699|1|1),INTRON(MODIFIER||||441|FAM176C|protein_coding|CODING|ENST00000300255|1|1),INTRON(MODIFIER|||||FAM176C|nonsense_mediated_decay|CODING|ENST00000435323|1|1),INTRON(MODIFIER|||||FAM176C|nonsense_mediated_decay|CODING|ENST00000437338|1|1),INTRON(MODIFIER|||||FAM176C|nonsense_mediated_decay|CODING|ENST00000457807|1|1),INTRON(MODIFIER|||||FAM176C|processed_transcript|CODING|ENST00000459833|1|1),INTRON(MODIFIER|||||FAM176C|retained_intron|CODING|ENST00000469079|1|1);RSPOS=33808131;dbSNPBuildID=131;SSR=0;SAO=0;VP=050000080005000002000100;GENEINFO=C21orf63:59271;WGT=1;VC=SNV;INT;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:0:0:0:0,0:0,0:36,36:0,0	75:2:0:0:0,1:0,0:68,69:5,8
21	35275605	.	T	C	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||1721|ITSN1|protein_coding|CODING|ENST00000381318||1),DOWNSTREAM(MODIFIER||||213|ATP5O|protein_coding|CODING|ENST00000290299||1),DOWNSTREAM(MODIFIER|||||ATP5O|nonsense_mediated_decay|CODING|ENST00000417181||1),DOWNSTREAM(MODIFIER|||||ATP5O|retained_intron|CODING|ENST00000491703||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:0:0:0:0,0:0,0:0,0:34,34	62:1:0:0:0,0:5,5:0,0:56,57
21	35299788	.	T	C	.	PASS	NT=ref;QSS=24;QSS_NT=24;SGT=TT->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||LINC00649|processed_transcript|NON_CODING|ENST00000400353||1),UPSTREAM(MODIFIER|||||LINC00649|processed_transcript|NON_CODING|ENST00000427447||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	25:0:0:0:0,0:0,0:0,0:25,46	52:0:0:0:0,0:11,12:0,0:41,83
21	37696446	.	G	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||939|MORC3|protein_coding|CODING|ENST00000400485|1|1),INTRON(MODIFIER|||||DOPEY2|nonsense_mediated_decay|CODING|ENST00000414001|1|1),INTRON(MODIFIER|||||DOPEY2|nonsense_mediated_decay|CODING|ENST00000418642|1|1),INTRON(MODIFIER|||||DOPEY2|nonsense_mediated_decay|CODING|ENST00000435949|1|1),INTRON(MODIFIER|||||DOPEY2|nonsense_mediated_decay|CODING|ENST00000445834|2|1),INTRON(MODIFIER|||||MORC3|processed_transcript|CODING|ENST00000487909|1|1),INTRON(MODIFIER|||||MORC3|retained_intron|CODING|ENST00000492336|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:1:0:0:0,0:0,0:33,35:0,0	81:2:0:0:0,0:0,0:73,75:6,7
21	37776789	.	A	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||559|CHAF1B|protein_coding|CODING|ENST00000314103|8|1),INTRON(MODIFIER|||||CHAF1B|processed_transcript|CODING|ENST00000481458|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	28:1:0:0:27,27:0,1:0,0:0,0	64:5:0:0:54,60:0,1:5,7:0,1
21	40830793	.	G	A	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||105|SH3BGR|protein_coding|CODING|ENST00000440288|1|1),INTRON(MODIFIER||||128|SH3BGR|protein_coding|CODING|ENST00000380631|1|1),INTRON(MODIFIER||||128|SH3BGR|protein_coding|CODING|ENST00000380634|1|1),INTRON(MODIFIER||||128|SH3BGR|protein_coding|CODING|ENST00000380637|1|1),INTRON(MODIFIER||||239|SH3BGR|protein_coding|CODING|ENST00000333634|1|1),INTRON(MODIFIER||||97|SH3BGR|protein_coding|CODING|ENST00000458295|1|1),UPSTREAM(MODIFIER||||81|SH3BGR|protein_coding|CODING|ENST00000423596||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:0:0:0:0,0:0,0:35,35:0,0	62:1:0:0:4,4:0,0:57,58:0,0
21	40891490	.	G	A	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||128|SH3BGR|protein_coding|CODING|ENST00000380631||1),DOWNSTREAM(MODIFIER||||128|SH3BGR|protein_coding|CODING|ENST00000380634||1),DOWNSTREAM(MODIFIER||||128|SH3BGR|protein_coding|CODING|ENST00000380637||1),DOWNSTREAM(MODIFIER||||239|SH3BGR|protein_coding|CODING|ENST00000333634||1),DOWNSTREAM(MODIFIER||||54|SH3BGR|protein_coding|CODING|ENST00000447939||1),DOWNSTREAM(MODIFIER||||97|SH3BGR|protein_coding|CODING|ENST00000458295||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:2:0:0:0,0:1,1:34,36:1,1	57:0:0:0:6,6:0,0:51,51:0,0
21	41554515	rs201295617	A	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1746|DSCAM|protein_coding|CODING|ENST00000404019|10|1),INTRON(MODIFIER||||2012|DSCAM|protein_coding|CODING|ENST00000400454|14|1);RSPOS=41554515;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000080005000002000100;WGT=1;VC=SNV;INT;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:4:0:0:29,36:0,0:0,1:0,0	41:4:0:0:31,41:1,1:5,9:0,0
21	41947486	.	A	G	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||2012|DSCAM|protein_coding|CODING|ENST00000400454|3|1),UPSTREAM(MODIFIER|||||AF064863.1|miRNA|NON_CODING|ENST00000408469||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	45:0:0:0:45,46:0,0:0,0:0,0	81:0:0:0:77,78:0,0:4,4:0,0
21	42607923	.	T	G	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||396|BACE2|protein_coding|CODING|ENST00000328735|2|1),INTRON(MODIFIER||||468|BACE2|protein_coding|CODING|ENST00000347667|2|1),INTRON(MODIFIER||||518|BACE2|protein_coding|CODING|ENST00000330333|2|1),INTRON(MODIFIER|||||BACE2|processed_transcript|CODING|ENST00000466122|1|1),INTRON(MODIFIER|||||BACE2|processed_transcript|CODING|ENST00000470864|2|1),INTRON(MODIFIER|||||BACE2|processed_transcript|CODING|ENST00000487994|1|1),INTRON(MODIFIER|||||BACE2|retained_intron|CODING|ENST00000491838|1|1),UPSTREAM(MODIFIER|||||BACE2|processed_transcript|CODING|ENST00000465326||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:0:0:0:0,0:0,0:0,0:39,39	73:1:0:0:0,0:0,0:5,5:67,68
21	42717156	.	A	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||187|FAM3B|protein_coding|CODING|ENST00000398647|3|1),INTRON(MODIFIER||||235|FAM3B|protein_coding|CODING|ENST00000357985|4|1),INTRON(MODIFIER||||258|FAM3B|protein_coding|CODING|ENST00000398646|3|1),INTRON(MODIFIER||||274|FAM3B|protein_coding|CODING|ENST00000398652|5|1),INTRON(MODIFIER|||||FAM3B|processed_transcript|CODING|ENST00000479810|5|1),INTRON(MODIFIER|||||FAM3B|processed_transcript|CODING|ENST00000518236|4|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	24:1:0:0:22,23:0,0:0,0:1,1	58:5:0:0:39,42:0,0:1,2:13,15
21	43498856	rs113589041	A	G	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1246|UMODL1|protein_coding|CODING|ENST00000400424|2|1),INTRON(MODIFIER||||1318|UMODL1|protein_coding|CODING|ENST00000408910|2|1),INTRON(MODIFIER||||1374|UMODL1|protein_coding|CODING|ENST00000400427|2|1),INTRON(MODIFIER||||1446|UMODL1|protein_coding|CODING|ENST00000408989|2|1);RSPOS=43498856;GMAF=0.0215;dbSNPBuildID=132;SSR=0;SAO=0;VP=050100080001040116000100;GENEINFO=UMODL1:89766;WGT=1;VC=SNV;SLO;INT;VLD;GNO;KGPhase1;KGPROD;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:1:0:0:36,39:0,0:0,0:0,0	55:1:0:0:48,61:0,0:6,7:0,0
21	43687594	.	A	G	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=AA->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER||||256|ABCG1|protein_coding|CODING|ENST00000450121|2|1),INTRON(MODIFIER||||663|ABCG1|protein_coding|CODING|ENST00000347800|2|1),INTRON(MODIFIER||||666|ABCG1|protein_coding|CODING|ENST00000398449|2|1),INTRON(MODIFIER||||668|ABCG1|protein_coding|CODING|ENST00000398457|3|1),INTRON(MODIFIER||||677|ABCG1|protein_coding|CODING|ENST00000343687|2|1),INTRON(MODIFIER||||678|ABCG1|protein_coding|CODING|ENST00000361802|2|1),INTRON(MODIFIER||||786|ABCG1|protein_coding|CODING|ENST00000340588|3|1),INTRON(MODIFIER||||824|ABCG1|protein_coding|CODING|ENST00000398437|3|1),INTRON(MODIFIER|||||ABCG1|processed_transcript|CODING|ENST00000462050|4|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	26:0:0:0:24,25:1,2:0,1:1,1	65:3:0:0:44,45:0,1:16,20:2,2
21	44055530	.	A	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:2:0:0:34,36:1,1:0,0:0,0	67:0:0:0:56,58:11,11:0,0:0,0
21	44805295	.	T	G	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=TT->GT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:4:0:0:0,0:0,0:0,1:33,37	62:4:0:0:0,0:0,0:10,11:48,51
21	45381295	.	G	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||37|AGPAT3|protein_coding|CODING|ENST00000448845||1),INTRON(MODIFIER||||127|AGPAT3|protein_coding|CODING|ENST00000445582|2|1),INTRON(MODIFIER||||254|AGPAT3|protein_coding|CODING|ENST00000422850|2|1),INTRON(MODIFIER||||254|AGPAT3|protein_coding|CODING|ENST00000457068|2|1),INTRON(MODIFIER||||376|AGPAT3|protein_coding|CODING|ENST00000291572|3|1),INTRON(MODIFIER||||376|AGPAT3|protein_coding|CODING|ENST00000327505|2|1),INTRON(MODIFIER||||376|AGPAT3|protein_coding|CODING|ENST00000398058|4|1),INTRON(MODIFIER||||376|AGPAT3|protein_coding|CODING|ENST00000398061|3|1),INTRON(MODIFIER||||376|AGPAT3|protein_coding|CODING|ENST00000398063|2|1),INTRON(MODIFIER||||376|AGPAT3|protein_coding|CODING|ENST00000546158|2|1),INTRON(MODIFIER||||78|AGPAT3|protein_coding|CODING|ENST00000448287|3|1),INTRON(MODIFIER|||||AGPAT3|processed_transcript|CODING|ENST00000479117|2|1),INTRON(MODIFIER|||||AGPAT3|processed_transcript|CODING|ENST00000481319|2|1),UPSTREAM(MODIFIER|||||AGPAT3|retained_intron|CODING|ENST00000467358||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	51:2:0:0:1,1:0,0:48,50:0,0	73:2:0:0:6,6:0,0:65,67:0,0
21	45789320	.	C	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||142|TRPM2|protein_coding|CODING|ENST00000431901||1),INTRON(MODIFIER||||1449|TRPM2|protein_coding|CODING|ENST00000300481|5|1),INTRON(MODIFIER||||1503|TRPM2|protein_coding|CODING|ENST00000300482|6|1),INTRON(MODIFIER||||1503|TRPM2|protein_coding|CODING|ENST00000397928|5|1),INTRON(MODIFIER||||1553|TRPM2|protein_coding|CODING|ENST00000397932|5|1),INTRON(MODIFIER|||||TRPM2|processed_transcript|CODING|ENST00000498430|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	42:1:0:0:0,0:40,45:1,1:0,0	71:4:0:0:0,1:62,69:5,6:0,0
21	45855811	.	A	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1449|TRPM2|protein_coding|CODING|ENST00000300481|28|1),INTRON(MODIFIER||||1503|TRPM2|protein_coding|CODING|ENST00000300482|29|1),INTRON(MODIFIER||||1503|TRPM2|protein_coding|CODING|ENST00000397928|28|1),INTRON(MODIFIER||||1553|TRPM2|protein_coding|CODING|ENST00000397932|29|1),INTRON(MODIFIER|||||TRPM2|processed_transcript|CODING|ENST00000490982|3|1),INTRON(MODIFIER|||||TRPM2|processed_transcript|CODING|ENST00000498430|24|1),UPSTREAM(MODIFIER|||||snoZ6|snoRNA|NON_CODING|ENST00000581669||1),UPSTREAM(MODIFIER|||||snoZ6|snoRNA|NON_CODING|ENST00000583496||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	24:0:0:0:23,23:1,1:0,0:0,0	77:4:0:0:61,62:1,4:11,12:0,0
21	45924000	.	G	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||530|TSPEAR|protein_coding|CODING|ENST00000397916||1),INTRON(MODIFIER||||669|TSPEAR|protein_coding|CODING|ENST00000323084|11|1),UPSTREAM(MODIFIER|||||TSPEAR-AS1|antisense|NON_CODING|ENST00000451035||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:2:0:0:0,0:0,0:32,36:0,0	64:6:0:0:0,0:0,0:51,61:7,9
21	46078626	.	C	A	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||96|KRTAP12-3|protein_coding|CODING|ENST00000397907||1),INTRON(MODIFIER||||669|TSPEAR|protein_coding|CODING|ENST00000323084|1|1),UPSTREAM(MODIFIER||||112|KRTAP12-4|protein_coding|CODING|ENST00000391618||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:0:0:0:0,0:32,32:0,0:0,0	60:1:0:0:8,9:51,51:0,0:0,0
21	46686932	.	T	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||POFUT2|processed_transcript|CODING|ENST00000463917||1),DOWNSTREAM(MODIFIER|||||POFUT2|processed_transcript|CODING|ENST00000468360||1),DOWNSTREAM(MODIFIER|||||POFUT2|processed_transcript|CODING|ENST00000493524||1),INTRON(MODIFIER||||429|POFUT2|protein_coding|CODING|ENST00000349485|8|1),INTRON(MODIFIER|||||POFUT2|nonsense_mediated_decay|CODING|ENST00000334538|8|1),INTRON(MODIFIER|||||POFUT2|processed_transcript|CODING|ENST00000460932|2|1),INTRON(MODIFIER|||||POFUT2|processed_transcript|CODING|ENST00000471540|7|1),UPSTREAM(MODIFIER|||||POFUT2|processed_transcript|CODING|ENST00000485190||1),UTR_3_PRIME(MODIFIER||||424|POFUT2|protein_coding|CODING|ENST00000331343|8|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:2:0:0:0,0:1,1:0,0:29,31	67:2:0:0:1,1:0,0:6,8:58,58
21	46785257	.	C	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:0:0:0:0,0:35,35:0,0:1,1	58:2:0:0:0,0:50,51:0,1:6,7
21	46943972	.	T	C	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||489|SLC19A1|protein_coding|CODING|ENST00000380010|5|1),INTRON(MODIFIER||||545|SLC19A1|protein_coding|CODING|ENST00000567670|5|1),INTRON(MODIFIER||||551|SLC19A1|protein_coding|CODING|ENST00000485649|4|1),INTRON(MODIFIER||||591|SLC19A1|protein_coding|CODING|ENST00000311124|5|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:2:0:0:0,0:0,0:0,1:32,35	106:4:0:0:0,0:14,16:1,1:87,92
21	46972802	.	A	G	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:0:0:0:30,30:0,0:0,0:0,0	84:4:0:0:69,70:0,1:11,14:0,0
21	46972804	.	G	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	28:0:0:0:0,0:0,0:28,28:0,0	88:4:0:0:5,7:0,0:79,82:0,0
21	46999561	.	A	G	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:2:0:0:33,34:2,2:0,1:0,0	73:14:0:0:51,56:0,0:8,18:0,0
21	47148236	.	T	C	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||371|PCBP3|protein_coding|CODING|ENST00000400314|1|1),INTRON(MODIFIER|||||PCBP3|processed_transcript|CODING|ENST00000465077|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:0:0:0:0,0:0,0:0,0:33,33	74:0:0:0:0,0:8,8:0,0:66,67
21	47306383	.	A	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||345|PCBP3|protein_coding|CODING|ENST00000400308|1|1),INTRON(MODIFIER||||351|PCBP3|protein_coding|CODING|ENST00000400310|2|1),INTRON(MODIFIER||||370|PCBP3|protein_coding|CODING|ENST00000400309|1|1),INTRON(MODIFIER||||371|PCBP3|protein_coding|CODING|ENST00000400314|3|1),INTRON(MODIFIER||||371|PCBP3|protein_coding|CODING|ENST00000449640|1|1),INTRON(MODIFIER|||||PCBP3|retained_intron|CODING|ENST00000498121|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	28:0:0:0:28,28:0,0:0,0:0,0	60:2:0:0:51,57:0,0:7,8:0,1
21	47318211	.	A	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||4|PCBP3|protein_coding|CODING|ENST00000549265||1),INTRON(MODIFIER||||322|PCBP3|protein_coding|CODING|ENST00000400305|1|1),INTRON(MODIFIER||||345|PCBP3|protein_coding|CODING|ENST00000400308|2|1),INTRON(MODIFIER||||351|PCBP3|protein_coding|CODING|ENST00000400310|3|1),INTRON(MODIFIER||||361|PCBP3|protein_coding|CODING|ENST00000400304|1|1),INTRON(MODIFIER||||370|PCBP3|protein_coding|CODING|ENST00000400309|2|1),INTRON(MODIFIER||||371|PCBP3|protein_coding|CODING|ENST00000400314|4|1),INTRON(MODIFIER||||371|PCBP3|protein_coding|CODING|ENST00000449640|2|1),INTRON(MODIFIER|||||PCBP3|retained_intron|CODING|ENST00000498121|3|1),UPSTREAM(MODIFIER|||||PCBP3|processed_transcript|CODING|ENST00000468429||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:1:0:0:29,30:1,2:0,0:0,0	65:1:0:0:55,59:2,2:7,8:0,0
21	47468506	rs201097425	G	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||AP001476.4|lincRNA|NON_CODING|ENST00000429512||1);RSPOS=47468506;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:1:0:0:0,0:0,0:28,30:0,0	73:9:0:0:8,13:0,0:55,64:1,1
21	47468701	rs57661370	G	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||AP001476.4|lincRNA|NON_CODING|ENST00000429512||1);RSPOS=47468701;dbSNPBuildID=129;SSR=0;SAO=0;VP=050000000001000002000100;WGT=1;VC=SNV;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:1:0:0:0,0:0,0:33,34:0,0	75:10:0:0:7,18:0,0:58,65:0,0
21	47479317	.	T	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||AP001476.3|lincRNA|NON_CODING|ENST00000435738||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:0:0:0:0,0:0,0:0,0:36,36	63:2:0:0:0,0:6,7:1,1:54,56
21	47560412	rs74826594	T	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||495|FTCD|protein_coding|CODING|ENST00000355384|10|1),INTRON(MODIFIER||||495|FTCD|protein_coding|CODING|ENST00000397743|10|1),INTRON(MODIFIER||||541|FTCD|protein_coding|CODING|ENST00000291670|10|1),INTRON(MODIFIER||||541|FTCD|protein_coding|CODING|ENST00000397746|10|1),INTRON(MODIFIER||||572|FTCD|protein_coding|CODING|ENST00000359679|10|1),INTRON(MODIFIER||||572|FTCD|protein_coding|CODING|ENST00000397748|10|1),INTRON(MODIFIER|||||FTCD|processed_transcript|CODING|ENST00000460011|1|1),INTRON(MODIFIER|||||FTCD|processed_transcript|CODING|ENST00000488577|1|1),INTRON(MODIFIER|||||FTCD|processed_transcript|CODING|ENST00000494498|1|1),INTRON(MODIFIER|||||FTCD|processed_transcript|CODING|ENST00000498355|10|1),UPSTREAM(MODIFIER|||||FTCD|processed_transcript|CODING|ENST00000483568||1);RSPOS=47560412;dbSNPBuildID=131;SSR=0;SAO=0;VP=050000080001000102000100;GENEINFO=FTCD:10841;WGT=1;VC=SNV;INT;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	28:2:0:0:0,0:0,1:0,0:26,28	76:10:0:0:1,1:11,19:0,1:54,58
21	47613814	.	A	T	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||AP001468.58|antisense|NON_CODING|ENST00000415026||1),DOWNSTREAM(MODIFIER|||||LSS|processed_transcript|CODING|ENST00000484808||1),INTRON(MODIFIER||||652|LSS|protein_coding|CODING|ENST00000457828|19|1),INTRON(MODIFIER||||721|LSS|protein_coding|CODING|ENST00000522411|20|1),INTRON(MODIFIER||||732|LSS|protein_coding|CODING|ENST00000356396|20|1),INTRON(MODIFIER||||732|LSS|protein_coding|CODING|ENST00000397728|20|1),UPSTREAM(MODIFIER||||308|AP001468.1|protein_coding|CODING|ENST00000424538||1),UPSTREAM(MODIFIER|||||LSS|processed_transcript|CODING|ENST00000474319||1),UPSTREAM(MODIFIER|||||LSS|processed_transcript|CODING|ENST00000491729||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:1:0:0:35,36:0,0:1,1:0,0	73:2:0:0:62,62:1,1:1,2:7,9
21	47802525	rs112262302	A	G	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||3336|PCNT|protein_coding|CODING|ENST00000359568|16|1),INTRON(MODIFIER|||||PCNT|processed_transcript|CODING|ENST00000480896|16|1);RSPOS=47802525;GMAF=0.131;dbSNPBuildID=132;SSR=0;SAO=0;VP=050100080001040116000100;GENEINFO=PCNT:5116;WGT=1;VC=SNV;SLO;INT;VLD;GNO;KGPhase1;KGPROD;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	42:1:0:0:41,44:0,0:0,0:0,0	72:5:0:0:61,73:0,0:6,7:0,0
21	47824051	.	T	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||3336|PCNT|protein_coding|CODING|ENST00000359568|27|1),INTRON(MODIFIER|||||PCNT|processed_transcript|CODING|ENST00000480896|27|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	26:0:1:0:0,0:0,0:0,0:26,27	39:2:1:0:0,1:5,6:1,1:31,34
22	16196667	.	T	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||LA16c-83F12.6|lincRNA|NON_CODING|ENST00000438574||1),DOWNSTREAM(MODIFIER|||||LA16c-83F12.6|lincRNA|NON_CODING|ENST00000453395||1),INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||AP000525.8|processed_transcript|NON_CODING|ENST00000383038||1),UPSTREAM(MODIFIER|||||AP000525.8|processed_transcript|NON_CODING|ENST00000413768||1),UPSTREAM(MODIFIER|||||AP000525.8|processed_transcript|NON_CODING|ENST00000437781||1),UPSTREAM(MODIFIER|||||AP000525.8|processed_transcript|NON_CODING|ENST00000447898||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:0:0:0:0,0:0,0:0,0:40,44	71:0:0:0:6,9:0,0:1,1:64,67
22	16353520	rs201637078	A	G	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||NF1P6|unprocessed_pseudogene|NON_CODING|ENST00000426025|9|1);RSPOS=16353520;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:1:0:0:35,47:0,0:0,0:0,0	99:0:0:0:87,104:2,2:10,10:0,0
22	16500908	.	G	A	.	PASS	NT=ref;QSS=25;QSS_NT=25;SGT=GG->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:0:0:0:0,1:0,0:39,50:0,0	56:0:0:0:12,12:1,1:43,68:0,0
22	16545815	.	T	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	27:0:0:0:0,0:0,0:0,0:27,29	87:1:0:0:9,10:1,1:0,0:76,78
22	16602668	.	A	G	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	24:0:0:0:23,23:0,0:0,1:1,1	61:1:0:0:49,51:0,0:11,14:0,2
22	16624972	.	A	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||BNIP3P2|processed_pseudogene|NON_CODING|ENST00000441221||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:1:0:0:31,32:0,0:0,0:0,0	67:1:0:0:60,60:0,1:0,0:6,6
22	16624978	.	C	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||BNIP3P2|processed_pseudogene|NON_CODING|ENST00000441221||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:1:0:0:0,0:32,33:0,0:0,0	72:1:0:0:0,0:64,65:1,1:6,6
22	16876430	.	T	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||ABCD1P4|unprocessed_pseudogene|NON_CODING|ENST00000399687||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:0:0:0:1,1:0,0:0,0:32,32	88:2:0:0:0,0:7,16:0,0:79,81
22	16876460	.	G	A	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||ABCD1P4|unprocessed_pseudogene|NON_CODING|ENST00000399687||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:0:0:0:0,0:0,0:39,39:0,0	82:3:0:0:6,14:0,0:73,74:0,0
22	16911539	.	C	T	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=CC->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=DOWNSTREAM(MODIFIER|||||PABPC1P9|unprocessed_pseudogene|NON_CODING|ENST00000426076||1),INTRON(MODIFIER|||||SLC9B1P4|unprocessed_pseudogene|NON_CODING|ENST00000421957|8|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	52:0:0:0:0,0:52,54:0,0:0,2	95:0:0:0:0,0:84,90:0,0:11,13
22	16943463	.	A	G	.	PASS	NT=ref;QSS=23;QSS_NT=23;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||SLC9B1P4|unprocessed_pseudogene|NON_CODING|ENST00000421957|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	49:2:0:0:46,59:1,1:0,0:0,0	159:1:0:0:149,175:1,1:8,12:0,0
22	16955567	.	T	A	.	PASS	NT=ref;QSS=24;QSS_NT=24;SGT=TT->AT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER|||||SLC9B1P4|unprocessed_pseudogene|NON_CODING|ENST00000421957|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	57:1:0:0:0,2:0,0:1,1:55,61	118:4:0:0:8,10:0,0:1,2:105,123
22	17042170	.	C	A	.	PASS	NT=ref;QSS=25;QSS_NT=25;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	56:6:0:0:0,3:50,93:0,0:0,0	111:9:0:0:6,12:96,163:0,1:0,0
22	17350195	.	G	T	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||AC007064.24|lincRNA|NON_CODING|ENST00000442403||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	42:1:0:0:0,0:0,0:41,46:0,0	98:2:0:0:0,0:0,0:85,98:11,14
22	17350243	.	G	A	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||AC007064.24|lincRNA|NON_CODING|ENST00000442403||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:0:0:0:0,0:0,0:40,42:0,0	96:0:0:0:9,10:0,0:87,97:0,0
22	17367767	rs74906982	C	A	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=17367767;dbSNPBuildID=131;SSR=0;SAO=0;VP=050000000001000102000100;WGT=1;VC=SNV;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:1:0:0:0,0:38,48:0,0:0,1	101:2:0:0:11,14:86,96:1,1:1,1
22	17367772	rs12330039	A	G	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=AA->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=17367772;dbSNPBuildID=120;SSR=0;SAO=0;VP=050000000001040002000100;WGT=1;VC=SNV;VLD;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	41:2:0:0:39,49:0,0:0,1:0,0	101:1:0:0:87,96:0,0:13,15:0,0
22	17383841	.	C	T	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=CC->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=DOWNSTREAM(MODIFIER|||||AC006548.20|processed_pseudogene|NON_CODING|ENST00000458718||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	71:1:0:0:0,0:70,80:0,0:0,2	165:1:0:0:0,0:153,198:0,0:11,13
22	17498205	.	C	G	.	PASS	NT=ref;QSS=23;QSS_NT=23;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	47:2:0:0:0,0:45,47:0,0:0,0	77:1:0:0:0,0:69,72:7,7:0,0
22	18235953	.	T	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->GT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER||||137|BID|protein_coding|CODING|ENST00000342111|1|1),INTRON(MODIFIER||||195|BID|protein_coding|CODING|ENST00000399774|1|1),INTRON(MODIFIER||||195|BID|protein_coding|CODING|ENST00000551952|1|1),INTRON(MODIFIER||||241|BID|protein_coding|CODING|ENST00000317361|1|1),INTRON(MODIFIER||||99|BID|protein_coding|CODING|ENST00000399765|1|1),INTRON(MODIFIER||||99|BID|protein_coding|CODING|ENST00000399767|1|1),INTRON(MODIFIER|||||BID|processed_transcript|CODING|ENST00000473439|1|1),INTRON(MODIFIER|||||BID|processed_transcript|CODING|ENST00000552886|1|1),INTRON(MODIFIER|||||BID|retained_intron|CODING|ENST00000550946|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	43:0:0:0:0,0:0,0:1,1:42,42	76:0:0:0:0,0:0,0:11,11:65,69
22	18431593	.	A	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1073|MICAL3|protein_coding|CODING|ENST00000429452|1|1),INTRON(MODIFIER||||124|MICAL3|protein_coding|CODING|ENST00000424046|1|1),INTRON(MODIFIER||||2002|MICAL3|protein_coding|CODING|ENST00000441493|1|1),INTRON(MODIFIER||||966|MICAL3|protein_coding|CODING|ENST00000444520|1|1),INTRON(MODIFIER||||976|MICAL3|protein_coding|CODING|ENST00000207726|1|1),INTRON(MODIFIER|||||MICAL3|nonsense_mediated_decay|CODING|ENST00000495076|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	27:0:0:0:27,28:0,0:0,0:0,0	71:4:0:0:60,66:0,0:7,9:0,0
22	18641905	rs2543952	A	C	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||372|USP18|protein_coding|CODING|ENST00000215794|2|1);RSPOS=18641905;GMAF=0.3883;dbSNPBuildID=100;SSR=0;SAO=0;VP=050100080005070116000100;GENEINFO=USP18:11274;WGT=1;VC=SNV;SLO;INT;ASP;VLD;G5A;G5;GNO;KGPhase1;KGPROD;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:0:0:0:36,36:0,0:1,1:0,0	60:1:0:0:55,57:4,5:0,0:0,0
22	18996449	.	A	G	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||DGCR5|antisense|NON_CODING|ENST00000424407|3|1),INTRON(MODIFIER|||||DGCR5|antisense|NON_CODING|ENST00000440005|4|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:1:0:0:34,35:0,0:0,0:0,0	65:0:0:0:60,61:1,1:4,4:0,0
22	19894562	.	G	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||TXNRD2|processed_transcript|CODING|ENST00000484672||1),DOWNSTREAM(MODIFIER|||||TXNRD2|retained_intron|CODING|ENST00000471835||1),INTRON(MODIFIER||||338|TXNRD2|protein_coding|CODING|ENST00000334363|8|1),INTRON(MODIFIER||||492|TXNRD2|protein_coding|CODING|ENST00000542719|8|1),INTRON(MODIFIER||||494|TXNRD2|protein_coding|CODING|ENST00000400518|8|1),INTRON(MODIFIER||||501|TXNRD2|protein_coding|CODING|ENST00000400525|7|1),INTRON(MODIFIER||||521|TXNRD2|protein_coding|CODING|ENST00000535882|8|1),INTRON(MODIFIER||||523|TXNRD2|protein_coding|CODING|ENST00000400519|8|1),INTRON(MODIFIER||||524|TXNRD2|protein_coding|CODING|ENST00000400521|8|1),INTRON(MODIFIER|||||TXNRD2|processed_transcript|CODING|ENST00000471149|8|1),INTRON(MODIFIER|||||TXNRD2|processed_transcript|CODING|ENST00000474308|7|1),INTRON(MODIFIER|||||TXNRD2|processed_transcript|CODING|ENST00000491939|8|1),INTRON(MODIFIER|||||TXNRD2|processed_transcript|CODING|ENST00000492802|8|1),INTRON(MODIFIER|||||TXNRD2|processed_transcript|CODING|ENST00000496545|8|1),INTRON(MODIFIER|||||TXNRD2|retained_intron|CODING|ENST00000494454|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:3:0:0:0,0:0,0:28,32:0,0	39:3:0:0:5,5:0,0:31,39:0,1
22	21043746	.	C	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->AC;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER||||457|POM121L4P|protein_coding|CODING|ENST00000412250||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	42:0:0:0:0,1:42,48:0,0:0,0	114:1:0:0:9,9:103,113:1,1:0,0
22	21110562	.	C	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||2044|PI4KA|protein_coding|CODING|ENST00000572273|23|1),INTRON(MODIFIER||||2102|PI4KA|protein_coding|CODING|ENST00000255882|23|1),INTRON(MODIFIER|||||PI4KA|processed_transcript|CODING|ENST00000466162|6|1),INTRON(MODIFIER|||||PI4KA|processed_transcript|CODING|ENST00000490873|6|1),UPSTREAM(MODIFIER|||||PI4KA|retained_intron|CODING|ENST00000475414||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:3:0:0:0,0:32,36:0,0:0,0	75:4:0:0:0,0:65,66:1,1:5,8
22	21512315	.	C	T	.	PASS	NT=ref;QSS=23;QSS_NT=23;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	22:0:0:0:0,0:22,23:0,0:0,0	44:0:0:0:0,0:34,34:0,0:10,12
22	21583688	.	G	A	.	PASS	NT=ref;QSS=29;QSS_NT=29;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER||||559|GGT2|protein_coding|CODING|ENST00000405188||1),UPSTREAM(MODIFIER||||569|GGT2|protein_coding|CODING|ENST00000401924||1),UPSTREAM(MODIFIER||||569|GGT2|protein_coding|CODING|ENST00000424627||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	59:1:0:0:0,0:0,1:58,62:0,0	117:1:0:0:10,10:0,0:106,113:0,0
22	22409115	.	C	T	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||IGLVIV-66-1|IG_V_pseudogene|NON_CODING|ENST00000521832||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:0:0:0:0,0:37,37:0,1:0,2	78:0:0:0:0,0:71,71:0,0:7,20
22	22409163	.	G	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||IGLVIV-66-1|IG_V_pseudogene|NON_CODING|ENST00000521832||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:0:0:0:0,0:0,0:34,34:0,3	76:0:0:0:0,0:0,0:69,69:7,20
22	22409172	.	G	A	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||IGLVIV-66-1|IG_V_pseudogene|NON_CODING|ENST00000521832||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:0:0:0:0,3:0,0:37,37:0,0	75:0:0:0:7,20:0,0:67,67:1,1
22	22623875	rs199803922	A	G	.	PASS	NT=ref;QSS=24;QSS_NT=24;SGT=AA->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=22623875;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:1:0:0:34,35:0,0:0,3:0,0	79:1:0:0:64,68:0,0:14,19:0,0
22	22623877	rs200404675	G	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=22623877;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:1:0:0:0,3:0,0:33,34:0,0	80:1:0:0:10,15:0,0:69,73:0,0
22	22623936	rs80006651	C	G	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->CG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=22623936;dbSNPBuildID=131;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	28:0:0:0:0,0:28,28:0,3:0,0	69:2:0:0:0,1:55,59:12,16:0,0
22	22651173	rs201758913	G	A	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||LL22NC03-2H8.4|lincRNA|NON_CODING|ENST00000412149||1),INTERGENIC(MODIFIER||||||||||1);RSPOS=22651173;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:0:0:0:0,0:0,0:33,34:0,0	76:0:0:0:9,11:0,0:67,72:0,0
22	22652358	.	A	G	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=AA->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=DOWNSTREAM(MODIFIER|||||LL22NC03-2H8.4|lincRNA|NON_CODING|ENST00000412149||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	54:2:0:0:52,58:0,0:0,1:0,0	94:1:0:0:87,94:0,0:5,8:1,1
22	22652378	.	C	A	.	PASS	NT=ref;QSS=23;QSS_NT=23;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||LL22NC03-2H8.4|lincRNA|NON_CODING|ENST00000412149||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	54:2:0:0:0,0:52,60:0,0:0,0	82:0:0:0:6,10:76,88:0,0:0,0
22	23685938	rs199660182	T	A	.	PASS	NT=ref;QSS=23;QSS_NT=23;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=23685938;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:0:0:0:0,1:0,0:0,0:31,33	71:1:0:0:12,15:0,0:0,1:58,59
22	23790662	.	A	G	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||AP000344.4|processed_transcript|NON_CODING|ENST00000454268|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	44:0:0:0:43,43:0,0:1,1:0,0	96:6:0:0:77,82:0,1:13,15:0,1
22	23790667	.	T	C	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||AP000344.4|processed_transcript|NON_CODING|ENST00000454268|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	46:0:0:0:0,0:0,0:1,1:45,45	95:6:0:0:0,0:7,11:1,3:81,84
22	24624040	rs9612570	C	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||72|GGT5|protein_coding|CODING|ENST00000424217||1),INTRON(MODIFIER||||510|GGT5|protein_coding|CODING|ENST00000418439|4|1),INTRON(MODIFIER||||554|GGT5|protein_coding|CODING|ENST00000263112|5|1),INTRON(MODIFIER||||586|GGT5|protein_coding|CODING|ENST00000327365|6|1),INTRON(MODIFIER||||587|GGT5|protein_coding|CODING|ENST00000398292|6|1);RSPOS=24624040;dbSNPBuildID=119;SSR=0;SAO=0;VP=050100080005000102000100;GENEINFO=GGT5:2687;WGT=1;VC=SNV;SLO;INT;ASP;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	14:0:7:0:0,0:14,14:0,0:0,0	34:2:24:0:9,9:23,25:0,0:0,0
22	24656692	rs62232035	A	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=AA->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER|||||BCRP1|unprocessed_pseudogene|NON_CODING|ENST00000444246|4|1),INTRON(MODIFIER|||||POM121L9P|processed_transcript|NON_CODING|ENST00000414583|4|1),INTRON(MODIFIER|||||POM121L9P|processed_transcript|NON_CODING|ENST00000419222|2|1);RSPOS=24656692;dbSNPBuildID=129;SSR=0;SAO=0;VP=050000080005070002000100;GENEINFO=POM121L9P:29774;WGT=1;VC=SNV;INT;ASP;VLD;G5A;G5;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	44:2:0:0:41,42:1,2:0,1:0,0	71:1:0:0:64,65:0,1:6,8:0,0
22	24904757	.	A	G	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||316|UPB1|protein_coding|CODING|ENST00000413389|3|1),INTRON(MODIFIER||||384|UPB1|protein_coding|CODING|ENST00000326010|3|1),INTRON(MODIFIER|||||UPB1|nonsense_mediated_decay|CODING|ENST00000415388|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:0:0:0:38,38:1,1:0,0:0,0	70:0:0:0:65,65:0,0:5,5:0,0
22	25273896	.	G	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1093|SGSM1|protein_coding|CODING|ENST00000400358|13|1),INTRON(MODIFIER||||1148|SGSM1|protein_coding|CODING|ENST00000400359|14|1),INTRON(MODIFIER|||||SGSM1|retained_intron|CODING|ENST00000473458|11|1),INTRON(MODIFIER|||||SGSM1|retained_intron|CODING|ENST00000480523|11|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	27:0:0:0:0,0:0,0:27,27:0,0	59:0:0:0:4,4:0,0:55,55:0,0
22	25804613	.	A	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER||||224|LRP5L|protein_coding|CODING|ENST00000444995||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	24:1:0:0:23,24:0,0:0,0:0,0	80:4:0:0:63,65:1,1:12,15:0,0
22	27109134	rs199918845	A	T	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||CTA-211A9.5|processed_transcript|NON_CODING|ENST00000421253|1|1),INTRON(MODIFIER|||||CTA-211A9.5|processed_transcript|NON_CODING|ENST00000435162|1|1),INTRON(MODIFIER|||||CTA-211A9.5|processed_transcript|NON_CODING|ENST00000437071|1|1),INTRON(MODIFIER|||||CTA-211A9.5|processed_transcript|NON_CODING|ENST00000440816|1|1),INTRON(MODIFIER|||||CTA-211A9.5|processed_transcript|NON_CODING|ENST00000444388|2|1),INTRON(MODIFIER|||||CTA-211A9.5|processed_transcript|NON_CODING|ENST00000449017|2|1),INTRON(MODIFIER|||||CTA-211A9.5|processed_transcript|NON_CODING|ENST00000450963|2|1),UPSTREAM(MODIFIER|||||CTA-211A9.5|processed_transcript|NON_CODING|ENST00000417083||1),UPSTREAM(MODIFIER|||||CTA-211A9.5|processed_transcript|NON_CODING|ENST00000446336||1);RSPOS=27109134;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000000015000002000100;WGT=1;VC=SNV;OTH;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	17:0:12:0:17,17:0,0:0,0:0,0	28:1:13:0:20,20:0,1:0,0:7,7
22	28939652	.	C	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||2481|TTC28|protein_coding|CODING|ENST00000397906|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:0:0:0:0,0:29,29:0,0:0,0	68:0:0:0:0,0:60,60:0,0:8,8
22	29087166	rs200803186	G	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||163|CHEK2|protein_coding|CODING|ENST00000382565|2|1),INTRON(MODIFIER||||289|CHEK2|protein_coding|CODING|ENST00000382566|12|1),INTRON(MODIFIER||||322|CHEK2|protein_coding|CODING|ENST00000544772|14|1),INTRON(MODIFIER||||452|CHEK2|protein_coding|CODING|ENST00000382578|11|1),INTRON(MODIFIER||||452|CHEK2|protein_coding|CODING|ENST00000403642|10|1),INTRON(MODIFIER||||514|CHEK2|protein_coding|CODING|ENST00000348295|12|1),INTRON(MODIFIER||||514|CHEK2|protein_coding|CODING|ENST00000402731|11|1),INTRON(MODIFIER||||543|CHEK2|protein_coding|CODING|ENST00000328354|13|1),INTRON(MODIFIER||||543|CHEK2|protein_coding|CODING|ENST00000404276|12|1),INTRON(MODIFIER||||543|CHEK2|protein_coding|CODING|ENST00000405598|14|1),INTRON(MODIFIER||||586|CHEK2|protein_coding|CODING|ENST00000382580|14|1),INTRON(MODIFIER|||||CHEK2|nonsense_mediated_decay|CODING|ENST00000416671|14|1),INTRON(MODIFIER|||||CHEK2|nonsense_mediated_decay|CODING|ENST00000417588|11|1),INTRON(MODIFIER|||||CHEK2|nonsense_mediated_decay|CODING|ENST00000433028|13|1),INTRON(MODIFIER|||||CHEK2|nonsense_mediated_decay|CODING|ENST00000433728|11|1),INTRON(MODIFIER|||||CHEK2|nonsense_mediated_decay|CODING|ENST00000448511|12|1),UPSTREAM(MODIFIER|||||CHEK2|retained_intron|CODING|ENST00000472807||1);RSPOS=29087166;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000080005000002000100;WGT=1;VC=SNV;INT;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:2:0:0:0,0:0,0:28,31:0,0	78:1:0:0:10,13:1,2:66,66:0,0
22	30223967	.	C	T	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||239|ASCC2|protein_coding|CODING|ENST00000431535|3|1),INTRON(MODIFIER||||240|ASCC2|protein_coding|CODING|ENST00000412689|1|1),INTRON(MODIFIER||||681|ASCC2|protein_coding|CODING|ENST00000542393|2|1),INTRON(MODIFIER||||757|ASCC2|protein_coding|CODING|ENST00000307790|2|1),INTRON(MODIFIER||||757|ASCC2|protein_coding|CODING|ENST00000397771|3|1),INTRON(MODIFIER|||||ASCC2|nonsense_mediated_decay|CODING|ENST00000449900|4|1),INTRON(MODIFIER|||||ASCC2|nonsense_mediated_decay|CODING|ENST00000454854|3|1),INTRON(MODIFIER|||||ASCC2|nonsense_mediated_decay|CODING|ENST00000458594|2|1),INTRON(MODIFIER|||||ASCC2|processed_transcript|CODING|ENST00000495967|1|1),INTRON(MODIFIER|||||ASCC2|retained_intron|CODING|ENST00000460313|3|1),INTRON(MODIFIER|||||ASCC2|retained_intron|CODING|ENST00000462454|1|1),INTRON(MODIFIER|||||ASCC2|retained_intron|CODING|ENST00000465667|3|1),INTRON(MODIFIER|||||ASCC2|retained_intron|CODING|ENST00000495681|2|1),UPSTREAM(MODIFIER|||||ASCC2|retained_intron|CODING|ENST00000463203||1),UPSTREAM(MODIFIER|||||ASCC2|retained_intron|CODING|ENST00000477074||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:0:0:0:0,0:36,36:0,0:0,0	69:0:0:0:0,0:65,65:0,0:4,4
22	30456925	.	A	C	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||CTA-85E5.10|processed_transcript|NON_CODING|ENST00000429350|1|1),INTRON(MODIFIER|||||CTA-85E5.10|processed_transcript|NON_CODING|ENST00000432568|1|1),INTRON(MODIFIER|||||CTA-85E5.10|processed_transcript|NON_CODING|ENST00000453743|1|1),INTRON(MODIFIER|||||MTMR3|processed_transcript|CODING|ENST00000464734|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:0:0:0:36,36:0,0:0,0:0,0	78:4:0:0:67,69:6,9:1,1:0,0
22	30748414	.	A	G	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||SF3A1|retained_intron|CODING|ENST00000496189||1),INTRON(MODIFIER||||728|SF3A1|protein_coding|CODING|ENST00000439242|2|1),INTRON(MODIFIER||||793|SF3A1|protein_coding|CODING|ENST00000215793|2|1),INTRON(MODIFIER|||||MTMR3|processed_transcript|CODING|ENST00000464734|1|1),INTRON(MODIFIER|||||SF3A1|nonsense_mediated_decay|CODING|ENST00000411423|1|1),INTRON(MODIFIER|||||SF3A1|nonsense_mediated_decay|CODING|ENST00000447376|2|1),INTRON(MODIFIER|||||SF3A1|retained_intron|CODING|ENST00000463818|2|1),UPSTREAM(MODIFIER||||195|CCDC157|protein_coding|CODING|ENST00000445005||1),UPSTREAM(MODIFIER||||200|CCDC157|protein_coding|CODING|ENST00000430839||1),UPSTREAM(MODIFIER||||752|CCDC157|protein_coding|CODING|ENST00000338306||1),UPSTREAM(MODIFIER||||752|CCDC157|protein_coding|CODING|ENST00000405659||1),UPSTREAM(MODIFIER||||83|CCDC157|protein_coding|CODING|ENST00000399824||1),UPSTREAM(MODIFIER|||||CCDC157|retained_intron|CODING|ENST00000475975||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:1:0:0:35,36:1,1:0,0:0,0	64:0:0:0:57,58:1,1:6,6:0,0
22	31072340	.	G	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||MTMR3|processed_transcript|CODING|ENST00000464734|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:0:0:0:0,0:0,0:31,31:0,0	86:1:0:0:0,0:0,0:80,81:5,7
22	31076812	.	A	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||MTMR3|processed_transcript|CODING|ENST00000464734|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:0:0:0:40,40:0,0:0,0:0,0	75:1:0:0:69,70:1,1:4,5:0,0
22	32683922	.	A	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:0:0:0:29,29:0,0:0,0:0,0	69:3:0:0:58,61:8,8:0,0:0,0
22	32683947	.	A	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:0:0:0:30,30:1,1:0,0:0,0	62:2:0:0:54,55:0,0:6,7:0,0
22	32683962	.	A	G	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:0:0:0:32,32:0,0:0,0:0,0	61:1:0:0:52,53:1,1:7,7:0,0
22	32851038	rs5754095	A	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=AA->AT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER||||231|BPIFC|protein_coding|CODING|ENST00000534972|3|1),INTRON(MODIFIER||||264|BPIFC|protein_coding|CODING|ENST00000432451|1|1),INTRON(MODIFIER||||507|BPIFC|protein_coding|CODING|ENST00000300399|1|1),INTRON(MODIFIER||||507|BPIFC|protein_coding|CODING|ENST00000397452|2|1),INTRON(MODIFIER||||82|BPIFC|protein_coding|CODING|ENST00000397450|3|1);RSPOS=32851038;GMAF=0.3329;dbSNPBuildID=114;SSR=0;SAO=0;VP=050000080015000016000100;GENEINFO=BPIFC:254240;WGT=1;VC=SNV;INT;OTH;ASP;KGPhase1;KGPROD;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	12:0:0:0:12,12:0,0:0,0:0,0	55:3:0:0:39,39:0,0:0,0:13,16
22	33428286	.	T	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||122|SYN3|protein_coding|CODING|ENST00000441821|1|1),INTRON(MODIFIER||||580|SYN3|protein_coding|CODING|ENST00000358763|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	28:1:0:0:0,0:0,0:0,0:27,30	72:3:0:0:8,8:0,0:1,2:60,62
22	34175441	.	A	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||107|LARGE|protein_coding|CODING|ENST00000434071|2|1),INTRON(MODIFIER||||134|LARGE|protein_coding|CODING|ENST00000413114|2|1),INTRON(MODIFIER||||135|LARGE|protein_coding|CODING|ENST00000430220|1|1),INTRON(MODIFIER||||46|LARGE|protein_coding|CODING|ENST00000423375|2|1),INTRON(MODIFIER||||59|LARGE|protein_coding|CODING|ENST00000432776|1|1),INTRON(MODIFIER||||704|LARGE|protein_coding|CODING|ENST00000337431|2|1),INTRON(MODIFIER||||704|LARGE|protein_coding|CODING|ENST00000402320|1|1),INTRON(MODIFIER||||707|LARGE|protein_coding|CODING|ENST00000437602|1|1),INTRON(MODIFIER||||756|LARGE|protein_coding|CODING|ENST00000354992|2|1),INTRON(MODIFIER||||756|LARGE|protein_coding|CODING|ENST00000397394|1|1),INTRON(MODIFIER|||||LARGE|processed_transcript|CODING|ENST00000494763|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:0:0:0:32,32:0,0:0,0:0,0	72:0:0:0:65,65:7,7:0,0:0,0
22	35241200	.	T	C	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:1:0:0:0,0:0,0:0,0:31,32	66:1:0:0:0,0:8,8:0,1:57,57
22	35742803	.	G	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||265|TOM1|protein_coding|CODING|ENST00000382034|15|1),INTRON(MODIFIER||||447|TOM1|protein_coding|CODING|ENST00000425375|12|1),INTRON(MODIFIER||||454|TOM1|protein_coding|CODING|ENST00000436462|12|1),INTRON(MODIFIER||||460|TOM1|protein_coding|CODING|ENST00000447733|13|1),INTRON(MODIFIER||||492|TOM1|protein_coding|CODING|ENST00000449058|13|1),INTRON(MODIFIER||||493|TOM1|protein_coding|CODING|ENST00000411850|13|1),INTRON(MODIFIER|||||TOM1|nonsense_mediated_decay|CODING|ENST00000337040|13|1),INTRON(MODIFIER|||||TOM1|nonsense_mediated_decay|CODING|ENST00000404284|15|1),INTRON(MODIFIER|||||TOM1|nonsense_mediated_decay|CODING|ENST00000424387|12|1),INTRON(MODIFIER|||||TOM1|retained_intron|CODING|ENST00000492723|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:0:0:0:0,0:0,0:29,29:0,0	86:3:0:0:0,0:6,7:77,79:0,0
22	36228369	.	G	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||127|RBFOX2|protein_coding|CODING|ENST00000397305|2|1),INTRON(MODIFIER||||199|RBFOX2|protein_coding|CODING|ENST00000408983|2|1),INTRON(MODIFIER||||358|RBFOX2|protein_coding|CODING|ENST00000262829|1|1),INTRON(MODIFIER||||367|RBFOX2|protein_coding|CODING|ENST00000405409|1|1),INTRON(MODIFIER||||370|RBFOX2|protein_coding|CODING|ENST00000359369|1|1),INTRON(MODIFIER||||370|RBFOX2|protein_coding|CODING|ENST00000414461|1|1),INTRON(MODIFIER||||376|RBFOX2|protein_coding|CODING|ENST00000416721|1|1),INTRON(MODIFIER||||380|RBFOX2|protein_coding|CODING|ENST00000449924|1|1),INTRON(MODIFIER||||451|RBFOX2|protein_coding|CODING|ENST00000438146|2|1),INTRON(MODIFIER|||||RBFOX2|retained_intron|CODING|ENST00000491982|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:1:0:0:0,0:0,0:28,29:0,0	75:4:0:0:5,6:0,0:66,69:0,0
22	38335548	.	C	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||161|C22orf23|protein_coding|CODING|ENST00000418863||1),DOWNSTREAM(MODIFIER||||217|C22orf23|protein_coding|CODING|ENST00000249079||1),DOWNSTREAM(MODIFIER||||217|C22orf23|protein_coding|CODING|ENST00000403026||1),DOWNSTREAM(MODIFIER||||217|C22orf23|protein_coding|CODING|ENST00000403305||1),INTRON(MODIFIER||||186|MICALL1|protein_coding|CODING|ENST00000424008|5|1),INTRON(MODIFIER||||290|MICALL1|protein_coding|CODING|ENST00000402631|8|1),INTRON(MODIFIER||||863|MICALL1|protein_coding|CODING|ENST00000215957|15|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:1:0:0:0,0:28,29:0,0:0,0	71:2:0:0:0,0:63,67:0,0:6,6
22	38676286	.	C	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:0:0:0:0,0:31,31:0,0:0,0	60:0:0:0:0,0:55,56:0,0:5,5
22	41485950	.	T	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER||||2414|EP300|protein_coding|CODING|ENST00000263253||1),UPSTREAM(MODIFIER|||||MIR1281|miRNA|NON_CODING|ENST00000408233||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:0:0:0:0,0:0,0:0,0:29,29	62:0:0:0:0,0:0,0:6,7:56,57
22	41846944	.	A	G	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER||||100|TOB2|protein_coding|CODING|ENST00000434408||1),UPSTREAM(MODIFIER||||344|TOB2|protein_coding|CODING|ENST00000327492||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:0:0:0:36,36:0,0:0,0:0,0	52:1:0:0:45,47:0,0:6,6:0,0
22	41846955	.	G	A	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER||||100|TOB2|protein_coding|CODING|ENST00000434408||1),UPSTREAM(MODIFIER||||344|TOB2|protein_coding|CODING|ENST00000327492||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:0:0:0:0,0:0,0:36,36:0,0	54:0:0:0:6,6:0,0:48,49:0,0
22	42116985	.	A	G	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||U6atac|snRNA|NON_CODING|ENST00000516794||1),INTRON(MODIFIER||||1274|MEI1|protein_coding|CODING|ENST00000401548|6|1),INTRON(MODIFIER||||238|MEI1|protein_coding|CODING|ENST00000300398|6|1),INTRON(MODIFIER||||506|MEI1|protein_coding|CODING|ENST00000540833|6|1),INTRON(MODIFIER||||607|MEI1|protein_coding|CODING|ENST00000400107|6|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:0:0:0:32,32:0,0:0,0:0,0	49:1:0:0:44,45:0,0:4,4:0,0
22	43255701	.	A	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||PACSIN2|processed_transcript|CODING|ENST00000473715|7|1),INTRON(MODIFIER|||||PACSIN2|processed_transcript|CODING|ENST00000487119|3|1),INTRON(MODIFIER|||||PACSIN2|processed_transcript|CODING|ENST00000496919|8|1),INTRON(MODIFIER|||||PACSIN2|processed_transcript|CODING|ENST00000505238|5|1),UPSTREAM(MODIFIER||||151|ARFGAP3|protein_coding|CODING|ENST00000454099||1),UPSTREAM(MODIFIER||||444|ARFGAP3|protein_coding|CODING|ENST00000429508||1),UPSTREAM(MODIFIER||||472|ARFGAP3|protein_coding|CODING|ENST00000437119||1),UPSTREAM(MODIFIER||||516|ARFGAP3|protein_coding|CODING|ENST00000263245||1),UPSTREAM(MODIFIER||||91|ARFGAP3|protein_coding|CODING|ENST00000435208||1),UPSTREAM(MODIFIER|||||ARFGAP3|retained_intron|CODING|ENST00000493606||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	20:1:0:0:18,19:1,1:0,0:0,0	52:0:0:0:41,41:0,0:1,1:10,10
22	43407890	.	T	C	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||154|PACSIN2|protein_coding|CODING|ENST00000453643|1|1),INTRON(MODIFIER||||445|PACSIN2|protein_coding|CODING|ENST00000337959|1|1),INTRON(MODIFIER||||486|PACSIN2|protein_coding|CODING|ENST00000263246|1|1),INTRON(MODIFIER|||||PACSIN2|nonsense_mediated_decay|CODING|ENST00000445706|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	41:0:0:0:0,0:0,0:0,0:41,41	58:0:0:0:0,0:4,4:0,0:54,54
22	43477652	.	T	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||394|TTLL1|protein_coding|CODING|ENST00000331018|1|1),INTRON(MODIFIER||||423|TTLL1|protein_coding|CODING|ENST00000266254|1|1),INTRON(MODIFIER||||59|TTLL1|protein_coding|CODING|ENST00000445824|1|1),INTRON(MODIFIER|||||TTLL1|nonsense_mediated_decay|CODING|ENST00000439248|1|1),INTRON(MODIFIER|||||TTLL1|nonsense_mediated_decay|CODING|ENST00000440761|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:2:0:0:0,0:1,1:1,1:30,33	71:0:0:0:8,8:0,0:1,1:62,62
22	43602047	.	T	C	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=TT->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER||||988|SCUBE1|protein_coding|CODING|ENST00000360835|21|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	26:2:0:0:0,0:0,1:0,0:24,30	54:2:0:0:1,1:13,14:0,0:38,46
22	43891794	.	G	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||168|MPPED1|protein_coding|CODING|ENST00000439548|2|1),INTRON(MODIFIER||||220|MPPED1|protein_coding|CODING|ENST00000414469|3|1),INTRON(MODIFIER||||326|MPPED1|protein_coding|CODING|ENST00000417669|4|1),INTRON(MODIFIER||||326|MPPED1|protein_coding|CODING|ENST00000443721|4|1),INTRON(MODIFIER||||326|MPPED1|protein_coding|CODING|ENST00000542779|4|1),INTRON(MODIFIER||||359|MPPED1|protein_coding|CODING|ENST00000538182|4|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	19:3:2:0:0,0:0,0:16,26:0,0	30:5:7:0:5,13:0,0:20,47:0,0
22	44133244	rs13054589	G	A	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1349|EFCAB6|protein_coding|CODING|ENST00000396231|4|1),INTRON(MODIFIER||||1501|EFCAB6|protein_coding|CODING|ENST00000262726|6|1),INTRON(MODIFIER||||200|EFCAB6|protein_coding|CODING|ENST00000356087|5|1),INTRON(MODIFIER||||243|EFCAB6|protein_coding|CODING|ENST00000358439|4|1),INTRON(MODIFIER|||||EFCAB6|retained_intron|CODING|ENST00000404038|6|1);RSPOS=44133244;dbSNPBuildID=121;SSR=0;SAO=0;VP=050000080001000002000100;GENEINFO=EFCAB6:64800;WGT=1;VC=SNV;INT;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:0:0:0:0,0:0,0:33,34:1,1	63:8:1:0:6,11:0,1:49,52:0,0
22	45038281	.	G	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:1:0:0:0,0:0,0:28,30:0,0	70:1:0:0:8,8:0,0:61,63:0,0
22	45604198	.	A	G	.	PASS	NT=ref;QSS=25;QSS_NT=25;SGT=AA->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=DOWNSTREAM(MODIFIER|||||KIAA0930|processed_transcript|CODING|ENST00000492273||1),DOWNSTREAM(MODIFIER|||||KIAA0930|retained_intron|CODING|ENST00000496226||1),INTRON(MODIFIER||||135|KIAA0930|protein_coding|CODING|ENST00000414854|2|1),INTRON(MODIFIER||||151|KIAA0930|protein_coding|CODING|ENST00000424508|2|1),INTRON(MODIFIER||||370|KIAA0930|protein_coding|CODING|ENST00000391627|2|1),INTRON(MODIFIER||||386|KIAA0930|protein_coding|CODING|ENST00000443310|2|1),INTRON(MODIFIER||||404|KIAA0930|protein_coding|CODING|ENST00000336156|2|1),INTRON(MODIFIER||||409|KIAA0930|protein_coding|CODING|ENST00000251993|2|1),INTRON(MODIFIER|||||KIAA0930|nonsense_mediated_decay|CODING|ENST00000417906|3|1),INTRON(MODIFIER|||||KIAA0930|nonsense_mediated_decay|CODING|ENST00000440039|1|1),INTRON(MODIFIER|||||KIAA0930|processed_transcript|CODING|ENST00000486640|2|1),INTRON(MODIFIER|||||KIAA0930|retained_intron|CODING|ENST00000488038|1|1),UPSTREAM(MODIFIER||||289|KIAA0930|protein_coding|CODING|ENST00000423262||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	71:4:0:0:65,77:1,2:1,3:0,0	115:6:0:0:102,113:0,1:7,12:0,0
22	45604201	.	G	A	.	PASS	NT=ref;QSS=24;QSS_NT=24;SGT=GG->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=DOWNSTREAM(MODIFIER|||||KIAA0930|processed_transcript|CODING|ENST00000492273||1),DOWNSTREAM(MODIFIER|||||KIAA0930|retained_intron|CODING|ENST00000496226||1),INTRON(MODIFIER||||135|KIAA0930|protein_coding|CODING|ENST00000414854|2|1),INTRON(MODIFIER||||151|KIAA0930|protein_coding|CODING|ENST00000424508|2|1),INTRON(MODIFIER||||370|KIAA0930|protein_coding|CODING|ENST00000391627|2|1),INTRON(MODIFIER||||386|KIAA0930|protein_coding|CODING|ENST00000443310|2|1),INTRON(MODIFIER||||404|KIAA0930|protein_coding|CODING|ENST00000336156|2|1),INTRON(MODIFIER||||409|KIAA0930|protein_coding|CODING|ENST00000251993|2|1),INTRON(MODIFIER|||||KIAA0930|nonsense_mediated_decay|CODING|ENST00000417906|3|1),INTRON(MODIFIER|||||KIAA0930|nonsense_mediated_decay|CODING|ENST00000440039|1|1),INTRON(MODIFIER|||||KIAA0930|processed_transcript|CODING|ENST00000486640|2|1),INTRON(MODIFIER|||||KIAA0930|retained_intron|CODING|ENST00000488038|1|1),UPSTREAM(MODIFIER||||289|KIAA0930|protein_coding|CODING|ENST00000423262||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	73:4:0:0:1,3:0,0:68,81:0,0	115:6:0:0:8,12:1,2:100,113:0,0
22	46257192	.	A	G	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:2:0:0:31,33:0,0:0,0:0,0	87:1:0:0:78,80:0,0:8,8:0,0
22	46563066	.	C	A	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||132|PPARA|protein_coding|CODING|ENST00000420804|2|1),INTRON(MODIFIER||||468|PPARA|protein_coding|CODING|ENST00000262735|2|1),INTRON(MODIFIER||||468|PPARA|protein_coding|CODING|ENST00000396000|2|1),INTRON(MODIFIER||||468|PPARA|protein_coding|CODING|ENST00000407236|1|1),INTRON(MODIFIER||||68|PPARA|protein_coding|CODING|ENST00000415785|2|1),INTRON(MODIFIER||||8|PPARA|protein_coding|CODING|ENST00000440343|2|1),UPSTREAM(MODIFIER|||||PPARA|processed_transcript|CODING|ENST00000481567||1),UPSTREAM(MODIFIER|||||PPARA|processed_transcript|CODING|ENST00000484619||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:0:0:0:0,0:36,36:0,0:0,0	67:0:0:0:7,7:60,60:0,0:0,0
22	47487129	.	A	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=AA->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER||||439|TBC1D22A|protein_coding|CODING|ENST00000355704|9|1),INTRON(MODIFIER||||458|TBC1D22A|protein_coding|CODING|ENST00000407381|10|1),INTRON(MODIFIER||||470|TBC1D22A|protein_coding|CODING|ENST00000406733|11|1),INTRON(MODIFIER||||517|TBC1D22A|protein_coding|CODING|ENST00000337137|11|1),INTRON(MODIFIER|||||TBC1D22A|nonsense_mediated_decay|CODING|ENST00000394449|10|1),INTRON(MODIFIER|||||TBC1D22A|nonsense_mediated_decay|CODING|ENST00000441162|12|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	28:2:0:0:25,28:0,0:1,2:0,0	61:5:0:0:42,44:0,0:13,17:1,1
22	48203577	.	T	G	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=TT->GT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER|||||RP11-191L9.4|processed_transcript|NON_CODING|ENST00000423737|8|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	42:2:0:0:0,0:0,0:1,2:39,40	75:0:0:0:0,0:1,1:16,16:58,58
22	48600012	.	G	C	.	PASS	NT=ref;QSS=24;QSS_NT=24;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	52:4:0:0:1,2:0,1:47,72:0,0	104:6:0:0:1,2:5,7:92,145:0,0
22	49138352	.	C	G	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||125|FAM19A5|protein_coding|CODING|ENST00000358295|3|1),INTRON(MODIFIER||||132|FAM19A5|protein_coding|CODING|ENST00000402357|3|1),INTRON(MODIFIER||||180|FAM19A5|protein_coding|CODING|ENST00000336769|3|1),INTRON(MODIFIER||||53|FAM19A5|protein_coding|CODING|ENST00000406880|2|1),INTRON(MODIFIER|||||FAM19A5|processed_transcript|CODING|ENST00000473898|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:1:0:0:0,1:34,34:0,0:0,0	86:5:0:0:0,0:76,81:5,5:0,0
22	49761973	.	A	G	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	46:4:0:0:41,46:1,1:0,0:0,0	99:4:0:0:89,98:1,2:5,7:0,0
22	49840745	rs59161072	G	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||C22orf34|nonsense_mediated_decay|CODING|ENST00000414287|1|1);RSPOS=49840745;dbSNPBuildID=129;SSR=0;SAO=0;VP=050000000001040002000100;WGT=1;VC=SNV;VLD;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	21:0:0:0:0,0:0,0:21,27:0,0	65:8:0:0:0,0:9,14:48,69:0,0
22	50063402	rs7511072	A	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=50063402;dbSNPBuildID=116;SSR=0;SAO=0;VP=050000000009000002000100;WGT=1;VC=SNV;CFL;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:0:0:0:36,36:0,0:0,0:0,0	67:0:0:0:61,67:0,0:5,5:1,1
22	50504616	.	G	A	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||222|MLC1|protein_coding|CODING|ENST00000442311||1),DOWNSTREAM(MODIFIER|||||MLC1|processed_transcript|CODING|ENST00000470008||1),INTRON(MODIFIER||||298|MLC1|protein_coding|CODING|ENST00000535444|9|1),INTRON(MODIFIER||||325|MLC1|protein_coding|CODING|ENST00000450140|8|1),INTRON(MODIFIER||||343|MLC1|protein_coding|CODING|ENST00000538737|9|1),INTRON(MODIFIER||||347|MLC1|protein_coding|CODING|ENST00000431262|9|1),INTRON(MODIFIER||||377|MLC1|protein_coding|CODING|ENST00000311597|10|1),INTRON(MODIFIER||||377|MLC1|protein_coding|CODING|ENST00000395876|10|1),INTRON(MODIFIER|||||MLC1|processed_transcript|CODING|ENST00000483836|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:1:0:0:0,0:0,0:35,36:0,0	74:1:0:0:9,9:0,0:64,65:0,0
22	50659652	.	T	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=DOWNSTREAM(MODIFIER||||669|RP3-402G11.5|protein_coding|CODING|ENST00000380903||1),DOWNSTREAM(MODIFIER|||||RP3-402G11.5|processed_transcript|CODING|ENST00000492092||1),DOWNSTREAM(MODIFIER|||||TUBGCP6|processed_transcript|CODING|ENST00000473946||1),DOWNSTREAM(MODIFIER|||||TUBGCP6|processed_transcript|CODING|ENST00000489511||1),EXON(MODIFIER|||||TUBGCP6|processed_transcript|CODING|ENST00000491449|8|1),INTRON(MODIFIER|||||TUBGCP6|retained_intron|CODING|ENST00000498611|16|1),NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|Acc/Gcc|T1046A|1493|TUBGCP6|protein_coding|CODING|ENST00000439308|16|1),NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|Acc/Gcc|T1046A|1819|TUBGCP6|protein_coding|CODING|ENST00000248846|16|1),UPSTREAM(MODIFIER||||488|TUBGCP6|protein_coding|CODING|ENST00000425018||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	45:0:0:0:0,0:0,0:0,0:45,46	104:2:0:0:0,0:5,5:0,0:97,99
22	50839857	.	C	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||Y_RNA|misc_RNA|NON_CODING|ENST00000459259||1),INTRON(MODIFIER||||927|PPP6R2|protein_coding|CODING|ENST00000359139|3|1),INTRON(MODIFIER||||932|PPP6R2|protein_coding|CODING|ENST00000395744|3|1),INTRON(MODIFIER||||933|PPP6R2|protein_coding|CODING|ENST00000395741|3|1),INTRON(MODIFIER||||966|PPP6R2|protein_coding|CODING|ENST00000216061|4|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:2:0:0:0,0:33,35:0,0:0,0	51:1:0:0:0,0:45,47:0,0:5,5
22	50843727	.	G	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||927|PPP6R2|protein_coding|CODING|ENST00000359139|3|1),INTRON(MODIFIER||||932|PPP6R2|protein_coding|CODING|ENST00000395744|3|1),INTRON(MODIFIER||||933|PPP6R2|protein_coding|CODING|ENST00000395741|3|1),INTRON(MODIFIER||||966|PPP6R2|protein_coding|CODING|ENST00000216061|4|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:4:0:0:0,0:0,0:30,38:0,0	87:4:0:0:7,9:0,0:76,90:0,0
X	162973	.	A	T	.	PASS	NT=ref;QSS=23;QSS_NT=23;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	65:2:0:0:62,77:0,0:0,0:1,1	135:5:0:0:124,144:0,0:0,0:6,8
X	170866	.	G	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||LINC00108|unprocessed_pseudogene|NON_CODING|ENST00000431238|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	47:2:0:0:0,0:1,1:44,46:0,0	62:0:0:0:6,7:0,0:56,57:0,0
X	171242	.	G	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||LINC00108|unprocessed_pseudogene|NON_CODING|ENST00000431238|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:0:0:0:0,0:0,0:30,30:0,0	73:1:0:0:0,0:5,5:67,70:0,0
X	184903	.	T	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:1:0:0:0,0:0,0:0,0:39,50	54:1:0:0:0,0:9,11:0,0:44,68
X	186627	.	G	A	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=GG->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	20:2:0:0:0,5:0,2:18,70:0,2	38:3:0:0:9,26:0,2:26,121:0,0
X	204744	.	A	G	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=AA->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER||||123|PLCXD1|protein_coding|CODING|ENST00000448477|1|1),INTRON(MODIFIER||||173|PLCXD1|protein_coding|CODING|ENST00000430923|2|1),INTRON(MODIFIER||||173|PLCXD1|protein_coding|CODING|ENST00000447472|2|1),INTRON(MODIFIER||||177|PLCXD1|protein_coding|CODING|ENST00000415337|2|1),INTRON(MODIFIER||||323|PLCXD1|protein_coding|CODING|ENST00000381657|2|1),INTRON(MODIFIER||||323|PLCXD1|protein_coding|CODING|ENST00000381663|2|1),INTRON(MODIFIER||||323|PLCXD1|protein_coding|CODING|ENST00000399012|3|1),INTRON(MODIFIER||||59|PLCXD1|protein_coding|CODING|ENST00000429181|3|1),INTRON(MODIFIER||||73|PLCXD1|protein_coding|CODING|ENST00000443019|2|1),INTRON(MODIFIER||||87|PLCXD1|protein_coding|CODING|ENST00000445062|3|1),INTRON(MODIFIER|||||PLCXD1|processed_transcript|CODING|ENST00000484611|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:1:0:0:34,37:0,0:1,1:0,0	70:0:0:0:57,63:1,1:11,11:1,1
X	393219	.	A	G	.	PASS	NT=ref;QSS=40;QSS_NT=40;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	87:5:0:0:82,128:0,0:0,2:0,2	155:19:0:0:126,207:0,3:10,12:0,3
X	459623	.	A	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:1:0:0:37,39:0,0:0,1:0,0	105:3:0:0:92,99:1,1:9,14:0,0
X	493512	.	C	T	.	PASS	NT=ref;QSS=29;QSS_NT=29;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	93:2:0:0:0,0:91,106:0,0:0,1	186:1:0:0:0,0:176,216:0,0:9,11
X	722728	.	G	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:2:0:0:0,0:0,1:32,34:0,0	62:0:0:0:5,5:0,0:57,57:0,0
X	722739	.	G	A	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:2:0:0:0,0:0,0:33,37:0,0	63:0:0:0:6,6:0,0:57,57:0,0
X	756930	.	T	G	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:2:0:0:0,0:0,0:0,0:38,40	62:2:0:0:0,0:0,0:8,9:52,54
X	872577	.	C	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:1:0:0:0,0:34,35:0,1:0,0	59:0:0:0:0,0:53,55:0,0:6,6
X	879135	.	T	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:1:0:0:0,0:0,5:0,0:31,72	45:2:0:0:0,0:4,16:0,1:39,102
X	931807	.	C	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	42:5:0:0:0,0:37,47:0,1:0,1	67:4:0:0:0,0:57,85:0,0:6,13
X	951392	.	C	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-309M23.1|lincRNA|NON_CODING|ENST00000420865|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	24:1:0:0:0,0:23,32:0,0:0,0	32:2:0:0:0,0:26,38:4,9:0,0
X	974065	.	A	C	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||RPL14P5|processed_pseudogene|NON_CODING|ENST00000436474||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	41:1:0:0:40,41:0,0:0,0:0,0	78:0:0:0:71,73:6,6:1,1:0,0
X	1010973	.	G	A	.	PASS	NT=ref;QSS=29;QSS_NT=29;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	59:1:0:0:0,0:0,0:58,96:0,0	122:3:0:0:9,16:0,0:110,139:0,0
X	1323674	.	T	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||233|CRLF2|protein_coding|CODING|ENST00000381566|3|1),INTRON(MODIFIER||||254|CRLF2|protein_coding|CODING|ENST00000400841|3|1),INTRON(MODIFIER||||256|CRLF2|protein_coding|CODING|ENST00000381567|3|1),INTRON(MODIFIER|||||CRLF2|processed_transcript|CODING|ENST00000467626|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	28:0:0:0:0,0:0,0:0,0:28,28	74:2:0:0:0,0:7,10:1,1:64,67
X	1364082	.	T	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:1:0:0:0,0:0,0:0,0:29,31	67:2:0:0:0,0:9,12:0,0:56,57
X	1406256	.	A	G	.	PASS	NT=ref;QSS=24;QSS_NT=24;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||187|CSF2RA|protein_coding|CODING|ENST00000419094|5|1),INTRON(MODIFIER||||233|CSF2RA|protein_coding|CODING|ENST00000355805|4|1),INTRON(MODIFIER||||237|CSF2RA|protein_coding|CODING|ENST00000412290|3|1),INTRON(MODIFIER||||267|CSF2RA|protein_coding|CODING|ENST00000501036|2|1),INTRON(MODIFIER||||333|CSF2RA|protein_coding|CODING|ENST00000361536|4|1),INTRON(MODIFIER||||333|CSF2RA|protein_coding|CODING|ENST00000381500|2|1),INTRON(MODIFIER||||377|CSF2RA|protein_coding|CODING|ENST00000355432|4|1),INTRON(MODIFIER||||400|CSF2RA|protein_coding|CODING|ENST00000381524|4|1),INTRON(MODIFIER||||400|CSF2RA|protein_coding|CODING|ENST00000381529|4|1),INTRON(MODIFIER||||400|CSF2RA|protein_coding|CODING|ENST00000432318|5|1),INTRON(MODIFIER||||410|CSF2RA|protein_coding|CODING|ENST00000381509|4|1),INTRON(MODIFIER||||434|CSF2RA|protein_coding|CODING|ENST00000417535|2|1),INTRON(MODIFIER|||||CSF2RA|nonsense_mediated_decay|CODING|ENST00000486791|4|1),INTRON(MODIFIER|||||CSF2RA|processed_transcript|CODING|ENST00000477940|1|1),INTRON(MODIFIER|||||CSF2RA|processed_transcript|CODING|ENST00000493312|3|1),INTRON(MODIFIER|||||CSF2RA|processed_transcript|CODING|ENST00000494969|5|1),UPSTREAM(MODIFIER|||||BX649553.3|miRNA|NON_CODING|ENST00000581137||1),UPSTREAM(MODIFIER|||||BX649553.4|miRNA|NON_CODING|ENST00000580687||1),UPSTREAM(MODIFIER|||||CSF2RA|processed_transcript|CODING|ENST00000475259||1),UPSTREAM(MODIFIER|||||CSF2RA|processed_transcript|CODING|ENST00000478256||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	42:3:0:0:39,42:0,1:0,0:0,0	60:3:0:0:48,49:0,1:9,10:0,0
X	1414444	.	T	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||237|CSF2RA|protein_coding|CODING|ENST00000412290||1),DOWNSTREAM(MODIFIER|||||BX649553.1|miRNA|NON_CODING|ENST00000583047||1),DOWNSTREAM(MODIFIER|||||BX649553.2|miRNA|NON_CODING|ENST00000578699||1),DOWNSTREAM(MODIFIER|||||BX649553.3|miRNA|NON_CODING|ENST00000581137||1),DOWNSTREAM(MODIFIER|||||BX649553.4|miRNA|NON_CODING|ENST00000580687||1),DOWNSTREAM(MODIFIER|||||MIR3690|miRNA|NON_CODING|ENST00000580266||1),DOWNSTREAM(MODIFIER|||||RNA5SP498|rRNA|NON_CODING|ENST00000411342||1),EXON(MODIFIER|||||CSF2RA|processed_transcript|CODING|ENST00000491683|2|1),INTRON(MODIFIER||||233|CSF2RA|protein_coding|CODING|ENST00000355805|7|1),INTRON(MODIFIER||||267|CSF2RA|protein_coding|CODING|ENST00000501036|7|1),INTRON(MODIFIER||||333|CSF2RA|protein_coding|CODING|ENST00000361536|9|1),INTRON(MODIFIER||||333|CSF2RA|protein_coding|CODING|ENST00000381500|7|1),INTRON(MODIFIER||||377|CSF2RA|protein_coding|CODING|ENST00000355432|9|1),INTRON(MODIFIER||||400|CSF2RA|protein_coding|CODING|ENST00000381524|9|1),INTRON(MODIFIER||||400|CSF2RA|protein_coding|CODING|ENST00000381529|9|1),INTRON(MODIFIER||||400|CSF2RA|protein_coding|CODING|ENST00000432318|10|1),INTRON(MODIFIER||||410|CSF2RA|protein_coding|CODING|ENST00000381509|9|1),INTRON(MODIFIER||||434|CSF2RA|protein_coding|CODING|ENST00000417535|7|1),INTRON(MODIFIER|||||CSF2RA|nonsense_mediated_decay|CODING|ENST00000486791|9|1),INTRON(MODIFIER|||||CSF2RA|processed_transcript|CODING|ENST00000475259|3|1),INTRON(MODIFIER|||||CSF2RA|processed_transcript|CODING|ENST00000493312|8|1),INTRON(MODIFIER|||||CSF2RA|processed_transcript|CODING|ENST00000494969|5|1),INTRON(MODIFIER|||||CSF2RA|processed_transcript|CODING|ENST00000498153|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	28:2:0:0:0,1:0,0:0,0:26,33	68:3:0:0:0,0:8,8:0,0:57,68
X	1492789	.	C	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->AC;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER||||300|IL3RA|protein_coding|CODING|ENST00000381469|6|1),INTRON(MODIFIER||||378|IL3RA|protein_coding|CODING|ENST00000331035|9|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	24:0:0:0:0,0:24,29:0,0:0,0	41:2:0:0:7,7:32,43:0,0:0,0
X	1509801	.	G	T	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=GG->GT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER||||157|SLC25A6|protein_coding|CODING|ENST00000447786|2|1),INTRON(MODIFIER||||298|SLC25A6|protein_coding|CODING|ENST00000381401|1|1),INTRON(MODIFIER|||||SLC25A6|processed_transcript|CODING|ENST00000475167|1|1),INTRON(MODIFIER|||||SLC25A6|processed_transcript|CODING|ENST00000484026|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	55:3:0:0:0,0:0,0:52,55:0,1	78:5:0:0:0,0:0,1:69,71:4,6
X	1568615	.	A	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||545|ASMTL|protein_coding|CODING|ENST00000416733|1|1),INTRON(MODIFIER||||563|ASMTL|protein_coding|CODING|ENST00000534940|1|1),INTRON(MODIFIER||||605|ASMTL|protein_coding|CODING|ENST00000381333|1|1),INTRON(MODIFIER||||621|ASMTL|protein_coding|CODING|ENST00000381317|1|1),INTRON(MODIFIER|||||ASMTL|processed_transcript|CODING|ENST00000474865|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	49:2:0:0:46,48:1,1:0,0:0,0	96:9:0:0:77,86:9,16:1,1:0,0
X	1745984	.	A	G	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=AA->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER||||298|ASMT|protein_coding|CODING|ENST00000381233|3|1),INTRON(MODIFIER||||345|ASMT|protein_coding|CODING|ENST00000381229|3|1),INTRON(MODIFIER||||373|ASMT|protein_coding|CODING|ENST00000381241|3|1),UPSTREAM(MODIFIER|||||RP13-297E16.3|processed_transcript|NON_CODING|ENST00000509780||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	41:0:0:0:41,41:0,0:0,1:0,0	66:5:0:0:56,60:0,0:5,8:0,0
X	1761514	.	C	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||124|ASMT|protein_coding|CODING|ENST00000432523|1|1),INTRON(MODIFIER||||298|ASMT|protein_coding|CODING|ENST00000381233|6|1),INTRON(MODIFIER||||345|ASMT|protein_coding|CODING|ENST00000381229|7|1),INTRON(MODIFIER||||373|ASMT|protein_coding|CODING|ENST00000381241|8|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:1:0:0:0,0:33,35:0,0:0,0	67:3:0:0:1,1:56,58:0,1:7,7
X	1777855	.	T	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:1:0:0:0,0:0,0:0,0:30,31	68:1:0:0:4,4:0,0:0,0:63,68
X	1780481	.	C	G	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:6:0:0:0,0:33,39:0,0:0,0	79:0:0:0:0,0:73,75:6,6:0,0
X	1785348	.	G	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	41:0:0:0:0,0:0,0:41,41:0,0	58:0:0:0:6,6:0,0:51,51:1,1
X	2021257	.	A	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	45:0:0:0:44,44:0,0:1,1:0,0	64:0:0:0:56,56:2,2:6,6:0,0
X	2021265	.	A	G	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	46:1:0:0:41,42:4,4:0,0:0,0	65:0:0:0:57,57:3,3:5,5:0,0
X	2023604	.	C	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->CG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	28:0:0:0:0,0:28,31:0,1:0,1	61:3:0:0:0,0:50,63:8,11:0,1
X	2134489	.	A	C	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||330|DHRSX|protein_coding|CODING|ENST00000334651||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:1:0:0:29,30:0,0:0,0:0,0	69:1:0:0:57,58:10,10:1,1:0,0
X	2134505	.	C	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||330|DHRSX|protein_coding|CODING|ENST00000334651||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:0:0:0:0,0:32,32:0,0:0,0	71:0:0:0:0,0:63,63:0,0:8,8
X	2134513	.	C	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||330|DHRSX|protein_coding|CODING|ENST00000334651||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:0:0:0:0,0:32,32:0,0:0,0	69:0:0:0:0,0:62,62:0,0:7,7
X	2143817	.	A	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||330|DHRSX|protein_coding|CODING|ENST00000334651|6|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:0:0:0:35,35:0,0:1,1:0,0	84:3:0:0:70,71:1,1:10,11:0,0
X	2364190	.	T	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||120|DHRSX|protein_coding|CODING|ENST00000444280|1|1),INTRON(MODIFIER||||231|DHRSX|protein_coding|CODING|ENST00000412516|1|1),INTRON(MODIFIER||||330|DHRSX|protein_coding|CODING|ENST00000334651|1|1),INTRON(MODIFIER|||||DHRSX|nonsense_mediated_decay|CODING|ENST00000441131|1|1),INTRON(MODIFIER|||||DHRSX|processed_transcript|CODING|ENST00000430536|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:2:0:0:0,0:0,0:0,1:31,32	81:7:0:0:0,0:4,5:0,1:70,75
X	2370800	.	T	C	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||120|DHRSX|protein_coding|CODING|ENST00000444280|1|1),INTRON(MODIFIER||||231|DHRSX|protein_coding|CODING|ENST00000412516|1|1),INTRON(MODIFIER||||330|DHRSX|protein_coding|CODING|ENST00000334651|1|1),INTRON(MODIFIER|||||DHRSX|nonsense_mediated_decay|CODING|ENST00000441131|1|1),INTRON(MODIFIER|||||DHRSX|processed_transcript|CODING|ENST00000430536|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	45:0:0:0:0,0:0,0:1,1:44,44	68:0:0:0:0,0:5,5:1,1:62,63
X	2723461	.	A	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||147|XG|protein_coding|CODING|ENST00000509484|5|1),INTRON(MODIFIER||||180|XG|protein_coding|CODING|ENST00000381174|7|1),INTRON(MODIFIER||||181|XG|protein_coding|CODING|ENST00000426774|7|1),INTRON(MODIFIER||||195|XG|protein_coding|CODING|ENST00000419513|7|1),INTRON(MODIFIER|||||XG|retained_intron|CODING|ENST00000519244|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	26:0:0:0:26,26:0,0:0,0:0,0	66:2:0:0:57,58:0,0:7,8:0,0
X	2925672	.	T	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||562|ARSH|protein_coding|CODING|ENST00000381130|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	45:0:0:0:0,0:0,0:0,0:45,45	63:1:0:0:0,0:6,7:0,0:56,56
X	3134702	.	C	G	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	42:0:0:0:0,0:42,44:0,0:0,0	54:0:0:0:0,0:50,51:4,4:0,0
X	3549797	.	T	A	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||358|PRKX|protein_coding|CODING|ENST00000262848|4|1),INTRON(MODIFIER|||||PRKX|processed_transcript|CODING|ENST00000425240|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	43:0:0:0:0,0:0,0:1,1:42,42	75:6:0:0:5,6:0,0:1,2:63,66
X	4629157	.	C	G	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	45:2:0:0:1,1:42,44:0,0:0,0	64:1:0:0:0,0:58,59:5,5:0,0
X	4785407	.	G	A	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:0:0:0:0,0:0,0:37,37:0,0	65:3:1:0:6,7:0,1:56,57:0,0
X	5451241	.	G	C	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:0:0:0:0,0:0,0:37,37:0,0	73:1:0:0:0,0:8,8:64,66:0,0
X	5603979	.	G	A	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-733O18.1|lincRNA|NON_CODING|ENST00000422914|1|1),INTRON(MODIFIER|||||RP11-733O18.1|lincRNA|NON_CODING|ENST00000444185|1|1),INTRON(MODIFIER|||||RP11-733O18.1|lincRNA|NON_CODING|ENST00000456559|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:2:0:0:0,0:0,0:36,38:0,0	75:1:0:0:6,7:0,0:68,68:0,0
X	6064785	.	G	T	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||NLGN4X|processed_transcript|CODING|ENST00000469740||1),DOWNSTREAM(MODIFIER|||||NLGN4X|processed_transcript|CODING|ENST00000483337||1),INTRON(MODIFIER||||816|NLGN4X|protein_coding|CODING|ENST00000275857|2|1),INTRON(MODIFIER||||816|NLGN4X|protein_coding|CODING|ENST00000381092|3|1),INTRON(MODIFIER||||816|NLGN4X|protein_coding|CODING|ENST00000381095|2|1),INTRON(MODIFIER||||816|NLGN4X|protein_coding|CODING|ENST00000538097|2|1),INTRON(MODIFIER||||836|NLGN4X|protein_coding|CODING|ENST00000381093|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:0:0:0:0,0:0,0:38,38:0,0	79:2:0:0:0,0:0,0:71,73:6,6
X	7135155	.	G	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER||||583|STS|protein_coding|CODING|ENST00000217961||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:0:0:0:0,0:0,0:32,32:0,0	64:0:0:0:6,6:0,0:58,58:0,0
X	9977669	.	T	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	28:0:0:0:0,0:0,0:0,0:28,28	73:0:0:0:0,0:4,4:0,0:69,70
X	10657276	.	T	A	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||667|MID1|protein_coding|CODING|ENST00000380785|1|1),INTRON(MODIFIER||||667|MID1|protein_coding|CODING|ENST00000380787|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:1:0:0:0,0:0,0:0,0:34,35	94:0:0:0:8,8:0,0:0,0:86,87
X	11042295	.	C	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-120D5.1|processed_transcript|NON_CODING|ENST00000433747|4|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:3:0:0:0,0:34,38:0,0:0,0	88:1:0:0:0,0:82,85:0,0:5,5
X	11942505	.	C	T	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:1:0:0:0,0:36,37:1,1:0,0	87:1:0:0:1,1:76,77:0,0:9,9
X	11993625	.	G	T	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:0:0:0:0,0:0,0:37,37:0,0	82:1:0:0:0,0:0,0:74,75:7,7
X	15107095	.	C	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:1:0:0:0,0:30,40:0,1:0,1	81:1:0:0:0,0:76,90:0,1:4,13
X	15107118	.	A	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:1:0:0:32,43:0,0:0,0:0,1	85:1:0:0:80,95:0,0:0,0:4,13
X	15107189	rs200195773	C	T	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=15107189;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	46:2:0:0:0,0:44,56:0,1:0,1	96:1:0:0:0,0:91,105:0,0:4,12
X	15271615	.	A	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||252|ASB9|protein_coding|CODING|ENST00000380483|3|1),INTRON(MODIFIER||||262|ASB9|protein_coding|CODING|ENST00000380485|3|1),INTRON(MODIFIER||||262|ASB9|protein_coding|CODING|ENST00000546332|4|1),INTRON(MODIFIER||||294|ASB9|protein_coding|CODING|ENST00000380488|3|1),INTRON(MODIFIER|||||ASB9|processed_transcript|CODING|ENST00000470015|4|1),INTRON(MODIFIER|||||ASB9|processed_transcript|CODING|ENST00000473862|3|1),INTRON(MODIFIER|||||ASB9|processed_transcript|CODING|ENST00000477346|1|1),INTRON(MODIFIER|||||ASB9|processed_transcript|CODING|ENST00000481384|2|1),INTRON(MODIFIER|||||ASB9|processed_transcript|CODING|ENST00000484017|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	28:0:0:0:27,27:1,1:0,0:0,0	72:3:0:0:64,68:0,0:5,5:0,0
X	15386106	rs201069453	G	A	.	PASS	NT=ref;QSS=23;QSS_NT=23;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||354|FIGF|protein_coding|CODING|ENST00000297904|1|1);RSPOS=15386106;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000080005000002000100;WGT=1;VC=SNV;INT;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	22:0:1:0:0,0:0,0:22,24:0,0	64:7:6:0:15,20:0,0:42,47:0,0
X	16145900	.	C	G	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||384|GRPR|protein_coding|CODING|ENST00000380289|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:0:0:0:0,0:34,34:0,0:0,0	73:0:0:0:0,0:63,63:10,10:0,0
X	16727338	.	C	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||586|CTPS2|protein_coding|CODING|ENST00000359276|1|1),INTRON(MODIFIER||||586|CTPS2|protein_coding|CODING|ENST00000380241|1|1),INTRON(MODIFIER||||586|CTPS2|protein_coding|CODING|ENST00000443824|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:1:0:0:0,0:30,31:0,0:0,0	71:1:0:0:0,0:64,68:6,7:0,0
X	16761655	.	A	G	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||352|SYAP1|protein_coding|CODING|ENST00000380155|4|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:0:0:0:33,34:0,0:0,0:0,0	58:2:0:0:48,50:1,1:7,7:0,0
X	16839940	rs192287166	T	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||396|TXLNG|protein_coding|CODING|ENST00000398155|1|1),INTRON(MODIFIER||||528|TXLNG|protein_coding|CODING|ENST00000380122|3|1);RSPOS=16839940;GMAF=0.00120555;dbSNPBuildID=135;SSR=0;SAO=0;VP=050000080005000014000100;GENEINFO=TXLNG:55787;WGT=1;VC=SNV;INT;ASP;KGPhase1;KGPROD	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:0:0:0:1,1:0,0:0,0:29,30	56:0:0:0:0,0:5,5:0,0:51,51
X	17038387	.	A	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||459|REPS2|protein_coding|CODING|ENST00000380064|2|1),INTRON(MODIFIER||||659|REPS2|protein_coding|CODING|ENST00000303843|2|1),INTRON(MODIFIER||||660|REPS2|protein_coding|CODING|ENST00000357277|2|1),INTRON(MODIFIER|||||REPS2|processed_transcript|CODING|ENST00000481792|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:1:0:0:29,31:0,0:0,0:0,0	70:1:0:0:63,64:6,6:0,0:0,0
X	17386374	.	G	C	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:0:0:0:0,0:0,0:40,40:0,0	81:2:0:0:0,0:5,5:74,78:0,0
X	18613190	.	T	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1030|CDKL5|protein_coding|CODING|ENST00000379989|10|1),INTRON(MODIFIER||||1030|CDKL5|protein_coding|CODING|ENST00000379996|9|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:1:0:0:0,0:0,0:0,0:29,30	73:2:0:0:0,0:8,8:0,0:63,65
X	19355688	.	C	A	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:0:0:0:0,0:39,39:0,0:0,0	66:0:0:0:4,4:61,61:1,1:0,0
X	22232072	.	G	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||452|PHEX|protein_coding|CODING|ENST00000418858|9|1),INTRON(MODIFIER||||652|PHEX|protein_coding|CODING|ENST00000535894|15|1),INTRON(MODIFIER||||695|PHEX|protein_coding|CODING|ENST00000537599|16|1),INTRON(MODIFIER||||749|PHEX|protein_coding|CODING|ENST00000379374|16|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:0:0:0:0,0:0,0:35,35:0,0	79:4:0:0:0,0:0,0:70,74:5,5
X	23144301	.	C	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:2:0:0:0,0:27,29:0,0:0,0	88:0:0:0:0,0:83,83:5,5:0,0
X	23864167	.	A	G	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||178|APOO|protein_coding|CODING|ENST00000439528|6|1),INTRON(MODIFIER||||179|APOO|protein_coding|CODING|ENST00000379220|7|1),INTRON(MODIFIER||||198|APOO|protein_coding|CODING|ENST00000379226|7|1),INTRON(MODIFIER|||||APOO|nonsense_mediated_decay|CODING|ENST00000490078|6|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:0:0:0:39,39:0,0:0,0:0,0	80:1:0:0:72,75:1,1:6,6:0,0
X	23888175	.	A	G	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||178|APOO|protein_coding|CODING|ENST00000439528|3|1),INTRON(MODIFIER||||179|APOO|protein_coding|CODING|ENST00000379220|3|1),INTRON(MODIFIER||||198|APOO|protein_coding|CODING|ENST00000379226|4|1),INTRON(MODIFIER|||||APOO|nonsense_mediated_decay|CODING|ENST00000490078|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:0:0:0:34,34:0,0:0,0:0,0	81:0:0:0:73,73:0,0:8,8:0,0
X	23942143	.	T	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||332|CXorf58|protein_coding|CODING|ENST00000379211|5|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:1:0:0:0,0:0,0:0,0:38,40	86:3:0:0:6,6:0,0:0,0:77,80
X	24053915	.	C	T	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	42:2:0:0:0,0:40,44:0,0:0,0	71:2:0:0:0,0:63,65:0,0:6,6
X	24122359	.	G	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	44:0:0:0:0,0:1,1:43,45:0,0	74:1:0:0:0,0:7,7:65,66:1,1
X	24180231	.	G	C	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||134|ZFX|protein_coding|CODING|ENST00000428571|1|1),INTRON(MODIFIER||||30|ZFX|protein_coding|CODING|ENST00000419690|2|1),INTRON(MODIFIER||||576|ZFX|protein_coding|CODING|ENST00000539115|1|1),INTRON(MODIFIER||||805|ZFX|protein_coding|CODING|ENST00000304543|3|1),INTRON(MODIFIER||||805|ZFX|protein_coding|CODING|ENST00000379177|4|1),INTRON(MODIFIER||||805|ZFX|protein_coding|CODING|ENST00000379188|1|1),INTRON(MODIFIER||||844|ZFX|protein_coding|CODING|ENST00000540034|2|1),INTRON(MODIFIER|||||ZFX|processed_transcript|CODING|ENST00000459724|1|1),INTRON(MODIFIER|||||ZFX|processed_transcript|CODING|ENST00000480195|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:2:0:0:1,1:0,0:37,39:0,0	70:1:0:0:0,0:5,5:64,65:0,0
X	24784791	.	G	A	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1462|POLA1|protein_coding|CODING|ENST00000379059|26|1),INTRON(MODIFIER||||1468|POLA1|protein_coding|CODING|ENST00000379068|26|1),INTRON(MODIFIER|||||POLA1|processed_transcript|CODING|ENST00000480125|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:0:0:0:0,0:0,0:35,35:0,0	73:1:0:0:9,9:0,1:63,63:0,0
X	25735995	.	T	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	28:0:0:0:0,0:0,0:0,0:28,28	68:1:0:0:6,6:0,0:1,1:60,61
X	25736015	.	T	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	28:0:0:0:0,0:0,0:0,0:28,28	63:2:0:0:0,0:6,6:0,0:55,57
X	26854784	.	C	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	28:0:0:0:0,0:28,28:0,0:0,0	69:1:0:0:6,6:62,63:0,0:0,0
X	27371543	.	T	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-268G12.1|processed_transcript|NON_CODING|ENST00000422048|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	27:0:0:0:0,0:0,0:0,0:27,27	72:0:0:0:0,0:4,4:0,0:68,68
X	27736389	.	C	A	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||28|DCAF8L2|protein_coding|CODING|ENST00000431122|5|1),INTRON(MODIFIER||||631|DCAF8L2|protein_coding|CODING|ENST00000451261|4|1),INTRON(MODIFIER|||||DCAF8L2|processed_transcript|CODING|ENST00000583068|6|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:0:0:0:0,0:39,39:0,0:0,0	72:1:0:0:6,6:65,66:0,0:0,0
X	27754186	.	C	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||28|DCAF8L2|protein_coding|CODING|ENST00000431122|5|1),INTRON(MODIFIER||||631|DCAF8L2|protein_coding|CODING|ENST00000451261|4|1),INTRON(MODIFIER|||||DCAF8L2|processed_transcript|CODING|ENST00000583068|6|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:0:0:0:0,0:32,32:0,0:0,0	68:0:0:0:5,5:63,63:0,0:0,0
X	28663955	.	T	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||696|IL1RAPL1|protein_coding|CODING|ENST00000378993|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:0:0:0:0,0:0,0:0,0:30,30	72:0:0:0:0,0:6,6:1,1:65,65
X	28836217	.	G	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||696|IL1RAPL1|protein_coding|CODING|ENST00000302196|1|1),INTRON(MODIFIER||||696|IL1RAPL1|protein_coding|CODING|ENST00000378993|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:1:0:0:0,0:0,0:29,30:0,0	75:1:0:0:0,0:0,0:68,69:6,7
X	29469061	.	G	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||696|IL1RAPL1|protein_coding|CODING|ENST00000302196|4|1),INTRON(MODIFIER||||696|IL1RAPL1|protein_coding|CODING|ENST00000378993|5|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:0:0:0:0,0:0,0:32,32:0,0	76:0:0:0:4,4:0,0:72,73:0,0
X	29938936	.	G	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER||||696|IL1RAPL1|protein_coding|CODING|ENST00000302196|7|1),INTRON(MODIFIER||||696|IL1RAPL1|protein_coding|CODING|ENST00000378993|8|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:2:0:0:0,1:0,0:33,34:0,0	71:3:0:0:9,12:1,1:58,58:0,0
X	30173860	.	T	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:5:0:0:0,0:0,0:0,0:30,35	77:8:0:0:0,0:7,8:0,0:62,70
X	30390095	.	A	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:0:0:0:30,30:0,0:0,0:0,0	58:0:0:0:53,53:5,5:0,0:0,0
X	32318576	.	A	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||3681|DMD|protein_coding|CODING|ENST00000378677|42|1),INTRON(MODIFIER||||3685|DMD|protein_coding|CODING|ENST00000357033|42|1),INTRON(MODIFIER|||||DMD|processed_transcript|CODING|ENST00000488902|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	28:1:0:0:27,28:0,0:0,0:0,0	76:0:0:0:68,68:8,8:0,0:0,0
X	32945101	.	G	A	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||100|DMD|protein_coding|CODING|ENST00000420596|2|1),INTRON(MODIFIER||||3681|DMD|protein_coding|CODING|ENST00000378677|2|1),INTRON(MODIFIER||||3685|DMD|protein_coding|CODING|ENST00000357033|2|1),INTRON(MODIFIER||||40|DMD|protein_coding|CODING|ENST00000448370|2|1),INTRON(MODIFIER||||772|DMD|protein_coding|CODING|ENST00000288447|2|1),INTRON(MODIFIER|||||DMD|processed_transcript|CODING|ENST00000472681|4|1),INTRON(MODIFIER|||||DMD|processed_transcript|CODING|ENST00000488902|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	42:1:0:0:0,0:0,0:41,41:0,1	65:1:0:0:6,6:0,0:58,59:0,0
X	33051926	.	G	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||100|DMD|protein_coding|CODING|ENST00000420596|1|1),INTRON(MODIFIER||||3681|DMD|protein_coding|CODING|ENST00000378677|1|1),INTRON(MODIFIER||||3685|DMD|protein_coding|CODING|ENST00000357033|1|1),INTRON(MODIFIER||||40|DMD|protein_coding|CODING|ENST00000448370|1|1),INTRON(MODIFIER||||772|DMD|protein_coding|CODING|ENST00000288447|1|1),INTRON(MODIFIER|||||DMD|processed_transcript|CODING|ENST00000472266|1|1),INTRON(MODIFIER|||||DMD|processed_transcript|CODING|ENST00000472681|2|1),INTRON(MODIFIER|||||DMD|processed_transcript|CODING|ENST00000488902|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	27:0:0:0:0,0:0,0:27,27:0,0	77:0:0:0:0,0:0,0:70,70:7,7
X	33330850	.	T	C	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||772|DMD|protein_coding|CODING|ENST00000288447|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:0:0:0:0,0:0,0:0,0:37,37	85:0:0:0:0,0:7,7:0,0:78,78
X	33625413	.	C	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:1:0:0:1,1:28,29:0,0:0,0	92:1:0:0:0,0:84,84:0,0:7,7
X	33799371	.	T	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-305F18.1|lincRNA|NON_CODING|ENST00000439992|1|1),INTRON(MODIFIER|||||RP11-305F18.1|lincRNA|NON_CODING|ENST00000445233|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:1:0:0:0,0:0,0:0,0:32,33	64:0:0:0:1,1:6,6:0,0:57,58
X	34232008	.	C	A	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-545D19.1|lincRNA|NON_CODING|ENST00000412652|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:0:0:0:0,0:33,33:0,0:0,0	82:1:0:0:7,7:74,75:0,0:0,0
X	34961966	.	C	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=SYNONYMOUS_CODING(LOW|SILENT|Cgg/Agg|R340|645|FAM47B|protein_coding|CODING|ENST00000329357|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:3:0:0:0,0:32,35:0,0:0,0	81:5:0:0:7,7:69,74:0,0:0,1
X	35588561	.	C	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:0:0:0:1,1:31,32:0,0:0,0	67:1:0:0:0,0:61,62:0,0:5,5
X	36192997	.	A	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:0:0:0:29,31:0,0:0,0:0,0	91:0:0:0:84,92:2,2:5,10:0,0
X	36192998	.	T	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:0:0:0:0,0:0,0:0,0:30,32	92:0:0:0:0,0:5,10:0,0:87,95
X	37032448	.	G	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||1035|FAM47C|protein_coding|CODING|ENST00000358047||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	26:0:0:0:0,0:0,0:26,26:0,0	61:0:0:0:6,6:0,0:54,55:1,1
X	37744045	.	C	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->AC;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER||||279|RP5-972B16.2|protein_coding|CODING|ENST00000465127|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:2:0:0:0,2:38,40:0,0:0,0	77:2:0:0:5,9:70,71:0,0:0,0
X	38162796	.	A	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||SNORA31|snoRNA|NON_CODING|ENST00000516241||1),INTRON(MODIFIER||||1020|RPGR|protein_coding|CODING|ENST00000339363|8|1),INTRON(MODIFIER||||1152|RPGR|protein_coding|CODING|ENST00000378505|8|1),INTRON(MODIFIER||||279|RP5-972B16.2|protein_coding|CODING|ENST00000465127|3|1),INTRON(MODIFIER||||480|RPGR|protein_coding|CODING|ENST00000338898|8|1),INTRON(MODIFIER||||646|RPGR|protein_coding|CODING|ENST00000342811|8|1),INTRON(MODIFIER||||753|RPGR|protein_coding|CODING|ENST00000309513|8|1),INTRON(MODIFIER||||815|RPGR|protein_coding|CODING|ENST00000318842|8|1),INTRON(MODIFIER|||||RPGR|nonsense_mediated_decay|CODING|ENST00000474584|8|1),INTRON(MODIFIER|||||RPGR|nonsense_mediated_decay|CODING|ENST00000482855|8|1),INTRON(MODIFIER|||||RPGR|retained_intron|CODING|ENST00000494841|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:0:0:0:29,29:0,0:0,0:0,0	90:2:0:0:81,81:7,8:0,1:0,0
X	39174645	.	C	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-265P11.2|lincRNA|NON_CODING|ENST00000429281|1|1),INTRON(MODIFIER|||||RP11-265P11.2|lincRNA|NON_CODING|ENST00000448597|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:0:0:0:0,0:29,29:0,0:0,0	81:1:0:0:0,0:75,76:0,0:5,5
X	40053923	.	A	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:1:0:0:35,37:0,0:0,0:0,0	79:1:0:0:73,74:5,5:0,0:0,0
X	40399968	.	C	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:0:0:0:0,0:34,35:0,0:0,0	74:0:0:0:0,0:70,70:0,0:4,4
X	40475884	rs142826598	G	T	.	PASS	NT=ref;QSS=24;QSS_NT=24;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=40475884;GMAF=0.0470163;dbSNPBuildID=134;SSR=0;SAO=0;VP=050000000005000014000100;WGT=1;VC=SNV;ASP;KGPhase1;KGPROD	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:2:0:0:0,0:0,0:28,35:0,1	60:6:0:0:0,1:0,0:43,50:11,19
X	41070853	rs7066743	T	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||USP9X|retained_intron|CODING|ENST00000487625||1),INTRON(MODIFIER||||2554|USP9X|protein_coding|CODING|ENST00000378308|33|1),INTRON(MODIFIER||||2570|USP9X|protein_coding|CODING|ENST00000324545|33|1),INTRON(MODIFIER|||||USP9X|nonsense_mediated_decay|CODING|ENST00000453805|32|1);RSPOS=41070853;GMAF=0.195901;dbSNPBuildID=116;SSR=0;SAO=0;VP=050000080005000016000100;GENEINFO=USP9X:8239;WGT=1;VC=SNV;INT;ASP;KGPhase1;KGPROD;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:1:0:0:0,0:0,0:0,0:37,38	70:0:0:0:0,0:8,8:0,0:62,65
X	41285371	.	A	G	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:0:0:0:32,32:0,0:0,0:0,0	63:1:0:0:55,55:0,1:7,8:0,0
X	42766070	.	C	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:0:0:0:0,0:33,33:0,0:0,0	91:1:0:0:0,0:85,86:0,0:5,5
X	42844912	.	T	C	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	44:0:0:0:0,0:0,0:0,0:44,44	70:1:0:0:0,0:4,4:1,1:64,65
X	43205263	.	C	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	28:0:0:0:0,0:28,28:0,0:0,0	70:0:0:0:5,5:65,65:0,0:0,0
X	44302631	rs28670863	A	G	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=44302631;GMAF=0.079566;dbSNPBuildID=125;SSR=0;SAO=0;VP=050000000005000016000100;WGT=1;VC=SNV;ASP;KGPhase1;KGPROD;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	26:0:0:0:26,26:0,0:0,0:0,0	35:0:0:0:30,30:0,0:5,7:0,0
X	45355423	.	C	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:0:0:0:0,0:32,32:0,0:0,0	77:1:0:0:0,0:71,72:0,0:5,5
X	45727234	.	A	G	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:0:0:0:36,36:0,0:0,0:0,0	80:1:0:0:75,76:0,0:4,4:0,0
X	46591417	.	G	T	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||725|SLC9A7|protein_coding|CODING|ENST00000328306|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:0:0:0:0,0:0,0:37,37:0,0	68:1:0:0:0,0:0,0:61,63:6,8
X	46591431	.	T	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||725|SLC9A7|protein_coding|CODING|ENST00000328306|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:1:0:0:0,0:0,0:0,0:32,33	54:2:0:0:5,7:0,0:0,0:47,50
X	47157721	.	C	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-571E6.3|lincRNA|NON_CODING|ENST00000366224|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:3:0:0:0,0:33,36:0,0:0,0	75:2:0:0:0,0:67,70:0,0:6,6
X	47256640	.	C	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||506|ZNF157|protein_coding|CODING|ENST00000377073|1|1),UPSTREAM(MODIFIER|||||RP11-571E6.4|processed_pseudogene|NON_CODING|ENST00000442314||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:2:0:0:0,0:27,29:0,0:0,1	85:1:1:0:7,8:75,76:0,0:2,2
X	48141741	.	A	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||RP11-344N17.11|processed_pseudogene|NON_CODING|ENST00000445444||1),INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||RP11-344N17.3|unprocessed_pseudogene|NON_CODING|ENST00000456455||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:1:0:0:32,33:0,0:0,0:0,0	81:0:0:0:76,76:0,0:1,1:4,4
X	48450156	.	C	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||WDR13|processed_transcript|CODING|ENST00000470124|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:0:0:0:0,0:34,34:0,0:0,0	67:0:0:0:0,0:63,63:0,0:4,4
X	49413968	.	C	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:0:0:0:0,0:29,29:0,0:0,0	64:1:0:0:0,0:59,60:0,0:4,4
X	50206204	.	A	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||DGKK|processed_transcript|NON_CODING|ENST00000376025|1|1),INTRON(MODIFIER|||||DGKK|processed_transcript|NON_CODING|ENST00000546288|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:0:0:0:34,34:0,0:1,1:0,0	77:1:0:0:66,70:10,11:0,0:0,0
X	50998434	.	A	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:3:0:0:35,38:1,1:0,0:0,0	76:1:0:0:70,71:0,0:0,0:5,5
X	51269429	.	A	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	28:1:0:0:27,29:0,0:0,0:0,0	72:2:0:0:66,68:0,0:4,4:0,0
X	51297831	.	G	A	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:1:0:0:0,0:0,0:34,34:0,0	89:0:0:0:7,7:0,0:82,82:0,0
X	51302809	.	G	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	27:2:0:0:0,0:0,1:25,27:0,0	78:0:0:0:11,12:0,0:67,67:0,0
X	51308819	.	G	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:1:0:0:0,0:0,0:33,34:0,0	77:1:0:0:5,5:0,0:71,73:0,0
X	53040955	.	G	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:1:0:0:0,0:0,0:28,31:0,0	55:1:0:0:4,4:2,2:48,50:0,0
X	53040958	.	G	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:1:0:0:0,0:0,0:31,34:0,0	56:1:0:0:4,4:1,1:50,52:0,0
X	53107226	.	C	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||51|GPR173|protein_coding|CODING|ENST00000375466||1),UPSTREAM(MODIFIER||||249|TSPYL2|protein_coding|CODING|ENST00000579390||1),UPSTREAM(MODIFIER||||693|TSPYL2|protein_coding|CODING|ENST00000375442||1),UPSTREAM(MODIFIER|||||TSPYL2|retained_intron|CODING|ENST00000553557||1),UTR_3_PRIME(MODIFIER||||373|GPR173|protein_coding|CODING|ENST00000332582|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	25:1:0:0:0,0:24,26:0,0:0,0	76:2:0:0:11,11:63,65:0,0:0,0
X	53736042	.	C	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:0:0:0:0,0:33,36:0,0:0,0	61:1:0:0:0,0:53,53:1,2:6,6
X	53878876	.	A	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:0:0:0:35,36:0,0:0,0:0,0	70:0:0:0:65,69:0,0:0,0:5,5
X	53878927	.	G	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:0:0:0:0,0:0,0:33,34:0,0	68:2:0:0:0,0:0,0:60,64:6,6
X	54007041	.	C	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1024|PHF8|protein_coding|CODING|ENST00000338154|18|1),INTRON(MODIFIER||||1060|PHF8|protein_coding|CODING|ENST00000357988|18|1),INTRON(MODIFIER||||878|PHF8|protein_coding|CODING|ENST00000322659|19|1),INTRON(MODIFIER||||948|PHF8|protein_coding|CODING|ENST00000338946|17|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:1:0:0:0,0:33,34:0,0:0,0	80:1:0:0:5,6:74,74:0,0:0,0
X	54158481	.	G	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1096|FAM120C|protein_coding|CODING|ENST00000375180|9|1),INTRON(MODIFIER||||895|FAM120C|protein_coding|CODING|ENST00000328235|9|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:2:0:0:0,0:0,0:33,36:0,0	80:3:0:0:5,5:0,0:72,77:0,0
X	54401831	.	C	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	44:1:0:0:0,0:43,46:0,0:0,0	65:7:0:0:0,0:53,60:0,0:5,7
X	54409709	.	A	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	27:0:0:0:27,27:0,0:0,0:0,0	76:0:0:0:70,71:0,0:6,6:0,0
X	54941485	.	G	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:2:0:0:0,0:0,0:27,28:0,1	65:2:0:0:8,9:0,1:55,56:0,1
X	56579346	.	A	C	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:1:0:0:36,38:0,0:0,0:0,0	81:1:0:0:76,77:4,4:0,0:0,0
X	57312144	.	G	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER||||532|FAAH2|protein_coding|CODING|ENST00000374900||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:0:0:0:0,0:0,0:34,34:0,0	78:0:0:0:0,0:0,0:71,71:7,7
X	57513841	.	A	G	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||532|FAAH2|protein_coding|CODING|ENST00000374900|10|1),INTRON(MODIFIER|||||FAAH2|processed_transcript|CODING|ENST00000491179|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:0:0:0:31,31:0,0:0,0:0,0	71:1:0:0:62,64:0,0:8,8:0,0
X	58282360	.	C	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:1:0:0:0,0:32,33:0,0:1,1	88:1:0:0:0,0:80,81:7,7:0,0
X	58303541	.	T	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:2:0:0:0,0:0,0:0,1:29,30	75:3:0:0:0,0:5,6:0,0:67,69
X	58488295	.	G	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->CG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:0:0:0:0,1:0,1:39,39:0,0	68:3:2:0:0,1:4,6:61,64:0,0
X	58522264	.	A	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:1:0:0:34,61:0,0:0,0:0,1	57:7:0:0:45,101:0,0:0,0:5,8
X	58522265	.	C	G	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:1:0:0:0,0:34,61:0,1:0,0	57:8:0:0:0,0:44,101:5,8:0,0
X	58522270	.	A	C	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:2:0:0:33,61:0,1:0,0:0,0	62:10:0:0:47,106:5,8:0,0:0,0
X	58522292	.	G	C	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:0:0:0:0,0:0,1:35,61:0,0	59:5:0:0:0,1:5,8:49,105:0,0
X	61709553	.	C	G	.	PASS	NT=ref;QSS=24;QSS_NT=24;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	53:1:0:0:0,0:52,121:0,2:0,1	107:2:0:0:0,2:100,291:5,12:0,0
X	61760185	.	C	G	.	PASS	NT=ref;QSS=23;QSS_NT=23;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	77:6:1:0:0,3:71,124:0,3:0,0	178:9:0:0:0,8:161,237:6,12:2,3
X	61811764	.	T	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:4:0:0:0,0:0,0:0,0:34,53	80:10:0:0:6,7:0,1:0,0:64,91
X	61830932	.	T	A	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:0:0:0:0,0:0,0:0,0:40,42	84:3:0:0:5,7:0,0:1,1:75,76
X	61874678	rs201904209	A	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=AA->AT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=61874678;dbSNPBuildID=137;SSR=0;SAO=0;VP=050000000005000002000100;WGT=1;VC=SNV;ASP;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:0:0:0:40,43:0,0:0,0:0,2	71:0:0:0:67,71:0,0:0,0:4,12
X	61916922	.	G	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	45:1:0:0:0,1:0,0:44,45:0,0	72:2:0:0:6,8:0,0:64,65:0,0
X	61916930	.	T	A	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	47:2:0:0:0,0:0,1:0,0:45,49	76:3:0:0:5,7:0,1:0,0:68,69
X	61991319	.	T	G	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	45:0:0:0:0,0:0,0:0,0:45,45	86:1:0:0:0,0:0,0:5,5:80,81
X	64918257	.	G	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||577|MSN|protein_coding|CODING|ENST00000360270|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	27:0:0:0:0,0:0,0:27,27:0,0	75:0:0:0:0,0:0,0:64,64:11,11
X	66071562	.	G	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:0:0:0:0,0:0,0:32,32:0,0	84:2:0:0:0,0:0,0:77,79:5,5
X	66444493	.	A	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	27:0:0:0:27,27:0,0:0,0:0,0	79:0:0:0:74,74:1,1:4,4:0,0
X	66804253	.	G	T	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||388|AR|protein_coding|CODING|ENST00000396043|1|1),INTRON(MODIFIER||||644|AR|protein_coding|CODING|ENST00000504326|1|1),INTRON(MODIFIER||||734|AR|protein_coding|CODING|ENST00000396044|1|1),INTRON(MODIFIER||||920|AR|protein_coding|CODING|ENST00000374690|1|1),INTRON(MODIFIER|||||AR|nonsense_mediated_decay|CODING|ENST00000514029|1|1),INTRON(MODIFIER|||||AR|processed_transcript|CODING|ENST00000513847|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:0:0:0:0,0:0,0:36,36:0,0	75:0:0:0:0,0:0,0:70,70:5,5
X	67491511	.	G	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||694|OPHN1|protein_coding|CODING|ENST00000540071|5|1),INTRON(MODIFIER||||802|OPHN1|protein_coding|CODING|ENST00000355520|5|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:1:0:0:0,0:0,0:32,33:0,0	75:1:0:0:0,0:0,0:67,68:7,7
X	70238982	rs5981058	C	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||U1|snRNA|NON_CODING|ENST00000391303||1),INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||RP5-1091N2.3|processed_pseudogene|NON_CODING|ENST00000453086||1);RSPOS=70238982;GMAF=0.0771549;dbSNPBuildID=114;SSR=0;SAO=0;VP=050000000005000016000100;WGT=1;VC=SNV;ASP;KGPhase1;KGPROD;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	19:0:0:0:1,1:18,19:0,0:0,0	68:2:0:0:20,21:46,48:0,0:0,1
X	70554892	.	A	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:0:0:0:30,30:0,0:0,0:0,0	87:0:0:0:80,81:0,0:7,7:0,0
X	72289378	.	A	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:4:0:0:35,37:0,1:0,1:0,0	60:7:0:0:48,52:0,1:5,9:0,0
X	72594239	.	C	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:0:0:0:0,0:32,32:0,0:0,0	78:0:0:0:0,0:70,70:0,0:8,8
X	72716156	.	C	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:0:0:0:0,0:29,29:0,0:0,0	68:0:0:0:0,0:63,63:0,0:5,5
X	73064614	.	A	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=AA->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=EXON(MODIFIER|||||XIST|processed_transcript|NON_CODING|ENST00000429829|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	45:4:0:0:41,44:0,0:0,1:0,0	78:2:0:0:71,72:0,0:5,7:0,0
X	73086209	.	C	G	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:0:0:0:0,0:34,34:0,0:0,0	74:1:0:0:0,0:68,68:5,5:0,0
X	74555526	.	A	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:0:0:0:28,29:2,2:0,0:0,0	80:6:0:0:66,73:0,0:8,10:0,0
X	76280815	.	G	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:1:0:0:0,0:0,0:32,33:0,0	85:0:0:0:0,0:7,7:78,78:0,0
X	76417242	.	G	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:0:0:0:0,0:0,0:31,31:0,0	75:0:0:0:0,0:9,9:66,66:0,0
X	76643143	.	C	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	26:0:0:0:0,0:26,26:0,0:0,0	53:2:0:0:1,1:46,48:4,4:0,0
X	77960364	.	A	C	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:0:0:0:33,33:0,0:0,0:0,0	68:0:0:0:61,61:7,7:0,0:0,0
X	78270649	.	A	C	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:0:0:0:38,38:0,0:1,1:0,0	85:1:0:0:77,77:7,8:0,0:0,0
X	79066149	.	G	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:0:0:0:0,0:0,0:32,32:0,0	71:0:0:0:0,0:0,0:64,66:7,7
X	80839340	.	G	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:1:0:0:0,0:0,0:30,31:0,0	70:0:0:0:4,4:0,0:66,67:0,0
X	81304014	.	G	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:0:0:0:0,0:0,0:31,31:0,0	80:0:0:0:0,0:1,1:73,73:6,6
X	82695601	.	C	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:0:0:0:0,0:30,30:0,0:0,0	70:0:0:0:4,4:66,67:0,0:0,0
X	83378723	.	C	G	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||745|RPS6KA6|protein_coding|CODING|ENST00000262752|8|1),INTRON(MODIFIER||||745|RPS6KA6|protein_coding|CODING|ENST00000543399|10|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:0:0:0:0,0:34,34:0,0:0,0	73:1:0:0:0,0:67,68:5,5:0,0
X	85148111	.	G	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||505|CHM|protein_coding|CODING|ENST00000537751|9|1),INTRON(MODIFIER||||653|CHM|protein_coding|CODING|ENST00000357749|12|1),INTRON(MODIFIER|||||CHM|processed_transcript|CODING|ENST00000467744|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	27:0:0:0:0,0:0,0:27,27:0,0	78:0:0:0:0,0:0,0:72,72:6,6
X	85942409	.	G	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||380|DACH2|protein_coding|CODING|ENST00000510272|3|1),INTRON(MODIFIER||||432|DACH2|protein_coding|CODING|ENST00000508860|4|1),INTRON(MODIFIER||||571|DACH2|protein_coding|CODING|ENST00000373131|3|1),INTRON(MODIFIER||||599|DACH2|protein_coding|CODING|ENST00000373125|4|1),INTRON(MODIFIER|||||DACH2|nonsense_mediated_decay|CODING|ENST00000461604|4|1),INTRON(MODIFIER|||||DACH2|nonsense_mediated_decay|CODING|ENST00000506327|4|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:0:0:0:0,0:0,0:30,31:0,0	53:0:0:0:0,0:0,0:49,49:4,4
X	86512598	.	T	G	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:1:0:0:0,0:0,0:0,0:34,35	65:1:0:0:0,0:1,1:5,5:58,59
X	88101646	.	C	T	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	41:0:0:0:0,0:41,41:0,0:0,0	73:1:0:0:0,0:68,69:0,0:4,4
X	90932325	.	T	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:0:0:0:0,0:0,0:0,0:34,35	80:1:0:0:0,0:6,10:0,0:73,74
X	91714873	.	G	C	.	PASS	NT=ref;QSS=26;QSS_NT=26;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=EXON(MODIFIER|||||RP13-138P15.3|processed_pseudogene|NON_CODING|ENST00000435214|1|1),INTRON(MODIFIER||||1065|PCDH11X|protein_coding|CODING|ENST00000504220|5|1),INTRON(MODIFIER||||1310|PCDH11X|protein_coding|CODING|ENST00000298274|4|1),INTRON(MODIFIER||||1310|PCDH11X|protein_coding|CODING|ENST00000373088|3|1),INTRON(MODIFIER||||1329|PCDH11X|protein_coding|CODING|ENST00000361655|4|1),INTRON(MODIFIER||||1337|PCDH11X|protein_coding|CODING|ENST00000373097|4|1),INTRON(MODIFIER||||1339|PCDH11X|protein_coding|CODING|ENST00000406881|5|1),INTRON(MODIFIER||||1347|PCDH11X|protein_coding|CODING|ENST00000373094|5|1),UPSTREAM(MODIFIER|||||AL121869.1|miRNA|NON_CODING|ENST00000390192||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:0:0:0:0,0:0,0:38,38:0,0	100:1:0:0:0,0:16,16:83,84:0,0
X	93549572	.	C	T	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:0:0:0:0,0:34,34:1,1:0,0	72:0:0:0:1,1:60,60:1,1:10,10
X	94437853	.	T	G	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:0:0:0:0,0:0,0:0,0:36,37	78:0:0:0:0,0:0,0:8,8:70,70
X	94729563	.	A	G	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:1:0:0:33,33:0,1:0,0:0,0	74:0:0:0:64,65:0,0:10,10:0,0
X	95489245	.	A	G	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	41:0:0:0:41,41:0,0:0,0:0,0	96:1:0:0:87,88:0,0:8,8:0,0
X	96246540	.	T	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1096|DIAPH2|protein_coding|CODING|ENST00000355827|17|1),INTRON(MODIFIER||||1096|DIAPH2|protein_coding|CODING|ENST00000373049|17|1),INTRON(MODIFIER||||1097|DIAPH2|protein_coding|CODING|ENST00000373054|17|1),INTRON(MODIFIER||||1101|DIAPH2|protein_coding|CODING|ENST00000324765|17|1),INTRON(MODIFIER||||1101|DIAPH2|protein_coding|CODING|ENST00000373061|17|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:4:0:0:0,0:0,0:0,0:26,30	55:4:0:0:0,0:5,5:0,0:46,50
X	96247637	.	T	G	.	PASS	NT=ref;QSS=23;QSS_NT=23;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1096|DIAPH2|protein_coding|CODING|ENST00000355827|17|1),INTRON(MODIFIER||||1096|DIAPH2|protein_coding|CODING|ENST00000373049|17|1),INTRON(MODIFIER||||1097|DIAPH2|protein_coding|CODING|ENST00000373054|17|1),INTRON(MODIFIER||||1101|DIAPH2|protein_coding|CODING|ENST00000324765|17|1),INTRON(MODIFIER||||1101|DIAPH2|protein_coding|CODING|ENST00000373061|17|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	44:0:0:0:0,0:0,0:0,0:44,44	78:1:0:0:0,0:0,0:7,7:70,71
X	96429063	.	A	C	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1096|DIAPH2|protein_coding|CODING|ENST00000355827|22|1),INTRON(MODIFIER||||1096|DIAPH2|protein_coding|CODING|ENST00000373049|22|1),INTRON(MODIFIER||||1097|DIAPH2|protein_coding|CODING|ENST00000373054|22|1),INTRON(MODIFIER||||1101|DIAPH2|protein_coding|CODING|ENST00000324765|22|1),INTRON(MODIFIER||||1101|DIAPH2|protein_coding|CODING|ENST00000373061|22|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:1:0:0:33,34:0,0:0,0:0,0	80:0:0:0:73,73:7,7:0,0:0,0
X	96526062	.	C	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1096|DIAPH2|protein_coding|CODING|ENST00000355827|23|1),INTRON(MODIFIER||||1096|DIAPH2|protein_coding|CODING|ENST00000373049|23|1),INTRON(MODIFIER||||1097|DIAPH2|protein_coding|CODING|ENST00000373054|23|1),INTRON(MODIFIER||||1101|DIAPH2|protein_coding|CODING|ENST00000324765|23|1),INTRON(MODIFIER||||1101|DIAPH2|protein_coding|CODING|ENST00000373061|23|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:0:0:0:0,0:30,30:0,0:0,0	73:0:0:0:6,6:67,67:0,0:0,0
X	96767470	.	C	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER||||1097|DIAPH2|protein_coding|CODING|ENST00000373054|26|1),INTRON(MODIFIER||||1101|DIAPH2|protein_coding|CODING|ENST00000324765|26|1),INTRON(MODIFIER||||1101|DIAPH2|protein_coding|CODING|ENST00000373061|26|1),INTRON(MODIFIER|||||DIAPH2-AS1|antisense|NON_CODING|ENST00000439759|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:2:0:0:0,0:30,33:0,1:0,1	81:1:0:0:0,0:70,77:0,0:10,14
X	97199067	.	G	C	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:0:0:0:0,0:0,0:35,35:0,0	79:2:0:0:1,1:7,7:69,71:0,0
X	98286397	.	C	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:0:0:0:0,0:30,30:0,0:0,0	68:0:0:0:5,5:63,64:0,0:0,0
X	98370011	.	A	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	26:0:0:0:26,26:0,0:0,0:0,0	64:1:0:0:56,57:0,0:1,1:6,6
X	99160783	.	A	G	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:0:0:0:38,38:0,0:0,0:1,1	73:0:0:0:68,68:0,0:5,5:0,0
X	99810459	rs185138885	A	G	.	PASS	NT=ref;QSS=26;QSS_NT=26;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=99810459;GMAF=0.391802;dbSNPBuildID=135;SSR=0;SAO=0;VP=050000000005000016000100;WGT=1;VC=SNV;ASP;KGPhase1;KGPROD;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	55:1:0:0:52,55:2,2:0,0:0,0	91:0:0:0:83,84:1,2:7,10:0,0
X	102387808	.	T	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	27:0:0:0:0,0:0,0:0,0:27,27	71:0:0:0:0,0:0,0:7,7:64,65
X	103809763	.	C	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER||||686|IL1RAPL2|protein_coding|CODING|ENST00000372582||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:1:0:0:0,0:33,34:0,0:0,0	68:0:0:0:5,5:63,63:0,0:0,0
X	105428890	.	T	G	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||696|MUM1L1|protein_coding|CODING|ENST00000337685|3|1),INTRON(MODIFIER||||696|MUM1L1|protein_coding|CODING|ENST00000357175|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	28:0:0:0:0,0:0,0:0,0:28,28	60:3:0:0:0,0:0,0:8,9:49,51
X	105558635	.	G	C	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	42:0:0:0:0,0:0,0:42,43:0,0	80:0:0:0:0,0:4,4:76,78:0,0
X	105668445	.	A	G	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||Y_RNA|misc_RNA|NON_CODING|ENST00000365537||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:0:0:0:35,36:1,1:0,0:0,0	67:0:0:0:62,62:0,0:5,5:0,0
X	106494100	.	A	G	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:0:0:0:34,34:0,0:0,0:0,0	78:2:0:0:72,73:0,0:4,5:0,0
X	106911480	.	C	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:0:0:0:1,1:33,33:0,0:0,0	76:0:0:0:1,1:70,70:1,1:4,4
X	106911485	.	C	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:0:0:0:0,0:33,33:0,0:0,0	76:0:0:0:0,0:71,71:0,0:5,5
X	107533962	.	G	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1633|COL4A6|protein_coding|CODING|ENST00000538570|3|1),INTRON(MODIFIER||||1666|COL4A6|protein_coding|CODING|ENST00000545689|3|1),INTRON(MODIFIER||||1690|COL4A6|protein_coding|CODING|ENST00000334504|3|1),INTRON(MODIFIER||||1691|COL4A6|protein_coding|CODING|ENST00000372216|3|1),INTRON(MODIFIER||||1691|COL4A6|protein_coding|CODING|ENST00000394872|3|1),INTRON(MODIFIER|||||COL4A6|processed_transcript|CODING|ENST00000461897|3|1),INTRON(MODIFIER|||||COL4A6|processed_transcript|CODING|ENST00000477085|3|1),INTRON(MODIFIER|||||COL4A6|retained_intron|CODING|ENST00000468338|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:0:0:0:0,0:0,0:29,29:0,0	83:0:0:0:6,6:0,0:77,77:0,0
X	109801168	.	A	T	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:1:0:0:36,36:0,1:0,0:0,0	89:3:0:0:78,81:1,1:0,0:7,8
X	109919419	.	A	G	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=UTR_3_PRIME(MODIFIER||||377|CHRDL1|protein_coding|CODING|ENST00000434224|10|1),UTR_3_PRIME(MODIFIER||||378|CHRDL1|protein_coding|CODING|ENST00000482160|10|1),UTR_3_PRIME(MODIFIER||||450|CHRDL1|protein_coding|CODING|ENST00000372045|12|1),UTR_3_PRIME(MODIFIER||||456|CHRDL1|protein_coding|CODING|ENST00000218054|12|1),UTR_3_PRIME(MODIFIER||||456|CHRDL1|protein_coding|CODING|ENST00000394797|12|1),UTR_3_PRIME(MODIFIER||||457|CHRDL1|protein_coding|CODING|ENST00000444321|12|1),UTR_3_PRIME(MODIFIER||||458|CHRDL1|protein_coding|CODING|ENST00000372042|12|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:0:0:0:37,37:1,1:0,0:0,0	93:0:0:0:82,82:1,1:10,10:0,0
X	110486572	rs191259913	T	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||386|CAPN6|protein_coding|CODING|ENST00000541758||1),DOWNSTREAM(MODIFIER||||641|CAPN6|protein_coding|CODING|ENST00000324068||1),INTERGENIC(MODIFIER||||||||||1);RSPOS=110486572;GMAF=0.00241109;dbSNPBuildID=135;SSR=0;SAO=0;VP=050000000005000014000100;WGT=1;VC=SNV;ASP;KGPhase1;KGPROD	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	27:0:0:0:0,0:0,0:0,0:27,27	77:0:0:0:0,0:5,5:0,0:72,72
X	111037273	.	C	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||973|TRPC5|protein_coding|CODING|ENST00000262839|7|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:0:0:0:0,0:29,29:0,0:0,0	65:0:0:0:0,0:61,61:0,0:4,4
X	111322841	.	C	T	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||973|TRPC5|protein_coding|CODING|ENST00000262839|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:1:0:0:0,0:36,38:0,0:0,0	87:0:0:0:0,0:80,80:0,0:7,7
X	111587297	.	G	C	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:0:0:0:0,0:0,0:34,34:0,0	73:0:0:0:0,0:9,9:64,64:0,0
X	113313184	.	T	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:0:0:0:0,0:0,0:0,0:29,29	74:1:0:0:7,8:0,0:0,0:66,66
X	113973237	.	T	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||248|HTR2C|protein_coding|CODING|ENST00000371950|4|1),INTRON(MODIFIER||||458|HTR2C|protein_coding|CODING|ENST00000276198|4|1),INTRON(MODIFIER||||458|HTR2C|protein_coding|CODING|ENST00000371951|5|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:1:0:0:0,0:0,0:0,0:29,31	71:1:0:0:0,0:6,6:0,0:64,64
X	114052501	.	A	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||248|HTR2C|protein_coding|CODING|ENST00000371950|4|1),INTRON(MODIFIER||||458|HTR2C|protein_coding|CODING|ENST00000276198|4|1),INTRON(MODIFIER||||458|HTR2C|protein_coding|CODING|ENST00000371951|5|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:2:0:0:29,30:0,1:0,0:0,0	112:3:0:0:102,105:0,0:0,0:7,7
X	114941039	.	A	G	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||AC005000.2|miRNA|NON_CODING|ENST00000580961||1),DOWNSTREAM(MODIFIER|||||RP1-241P17.3|processed_pseudogene|NON_CODING|ENST00000434365||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:0:0:0:36,37:0,0:0,0:0,0	75:0:0:0:71,71:0,0:4,4:0,0
X	114941051	.	G	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||AC005000.2|miRNA|NON_CODING|ENST00000580961||1),DOWNSTREAM(MODIFIER|||||RP1-241P17.3|processed_pseudogene|NON_CODING|ENST00000434365||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:1:0:0:0,0:0,0:33,35:0,0	73:0:0:0:4,4:0,0:69,69:0,0
X	116488669	.	C	T	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:1:0:0:0,0:36,36:0,0:0,0	67:1:0:0:0,0:61,61:0,0:5,6
X	118901009	.	T	C	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:0:0:0:0,0:0,0:0,0:40,40	43:0:0:0:0,0:5,5:0,0:38,38
X	119523305	.	T	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:0:0:0:0,0:0,0:0,0:34,36	70:0:0:0:0,0:0,0:8,10:62,67
X	120155623	.	T	G	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||RP1-296G17.3|processed_pseudogene|NON_CODING|ENST00000424220||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:0:0:0:0,0:1,1:0,0:39,40	64:0:0:0:0,0:0,0:5,5:59,59
X	121648220	.	A	G	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:1:0:0:32,32:0,1:0,0:0,0	76:0:0:0:68,68:0,0:8,8:0,0
X	121681695	.	C	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	27:0:0:0:0,0:27,30:0,0:0,0	66:2:0:0:0,0:57,57:7,8:0,1
X	122979318	.	A	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:2:0:0:29,32:0,0:0,0:0,0	71:4:0:0:58,62:7,8:1,1:1,1
X	123199615	.	T	C	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||547|STAG2|protein_coding|CODING|ENST00000455404||1),DOWNSTREAM(MODIFIER|||||STAG2|processed_transcript|CODING|ENST00000466748||1),DOWNSTREAM(MODIFIER|||||STAG2|processed_transcript|CODING|ENST00000471107||1),DOWNSTREAM(MODIFIER|||||STAG2|processed_transcript|CODING|ENST00000483575||1),INTRON(MODIFIER||||1162|STAG2|protein_coding|CODING|ENST00000354548|19|1),INTRON(MODIFIER||||1231|STAG2|protein_coding|CODING|ENST00000371144|20|1),INTRON(MODIFIER||||1231|STAG2|protein_coding|CODING|ENST00000371157|19|1),INTRON(MODIFIER||||1231|STAG2|protein_coding|CODING|ENST00000371160|20|1),INTRON(MODIFIER||||1268|STAG2|protein_coding|CODING|ENST00000218089|20|1),INTRON(MODIFIER||||1268|STAG2|protein_coding|CODING|ENST00000371145|20|1),INTRON(MODIFIER|||||STAG2|processed_transcript|CODING|ENST00000469481|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:0:0:0:0,0:0,0:0,0:39,39	80:1:0:0:0,0:8,9:1,1:70,70
X	123726576	.	A	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||2725|ODZ1|protein_coding|CODING|ENST00000371130|11|1),INTRON(MODIFIER||||2732|ODZ1|protein_coding|CODING|ENST00000422452|11|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:0:0:0:29,29:0,0:0,0:0,0	72:3:0:0:63,64:0,0:0,0:6,8
X	123962035	.	A	G	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||2725|ODZ1|protein_coding|CODING|ENST00000371130|3|1),INTRON(MODIFIER||||2732|ODZ1|protein_coding|CODING|ENST00000422452|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:0:0:0:40,40:0,0:0,0:0,0	86:0:0:0:80,80:0,0:6,6:0,0
X	124512033	.	C	A	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:0:0:0:0,0:33,33:0,0:0,0	67:0:0:0:6,6:60,60:1,1:0,0
X	125185851	.	G	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	27:0:0:0:0,0:0,0:27,30:0,0	55:0:0:0:0,0:0,0:48,53:7,7
X	125318368	.	C	T	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:0:0:0:0,0:38,38:0,0:0,0	69:0:0:0:0,0:63,63:0,0:6,6
X	125472025	.	A	G	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	44:0:0:0:44,45:0,0:0,0:0,0	65:1:0:0:60,61:0,0:4,4:0,0
X	127304974	.	G	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:1:0:0:0,0:0,0:33,34:0,0	82:0:0:0:0,0:0,0:75,75:7,7
X	127406779	.	T	C	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:0:0:0:0,0:0,0:0,0:35,35	78:0:0:0:0,0:5,5:0,0:73,73
X	128199667	rs11796391	A	G	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=128199667;dbSNPBuildID=120;SSR=0;SAO=0;VP=050000000001040102000100;WGT=1;VC=SNV;VLD;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:4:0:0:35,39:0,0:0,0:0,1	109:1:0:0:92,96:1,1:15,17:0,0
X	128565361	.	A	G	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	55:15:0:0:40,64:0,0:0,0:0,0	150:46:0:0:92,154:0,0:12,13:0,0
X	128565367	.	A	G	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	54:15:2:0:39,64:0,0:0,0:0,0	143:43:4:0:88,147:0,0:11,12:1,1
X	130816915	.	G	A	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	16:0:5:0:0,0:0,0:16,17:0,0	44:9:5:0:9,14:0,0:26,37:0,0
X	131662914	rs192737320	G	A	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=131662914;GMAF=0.00120555;dbSNPBuildID=135;SSR=0;SAO=0;VP=050000000005000014000100;WGT=1;VC=SNV;ASP;KGPhase1;KGPROD	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:0:0:0:0,0:0,0:39,39:0,0	86:1:0:0:6,7:0,0:79,80:0,0
X	131835579	.	G	C	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||331|HS6ST2|protein_coding|CODING|ENST00000406696|1|1),INTRON(MODIFIER||||459|HS6ST2|protein_coding|CODING|ENST00000370837|1|1),INTRON(MODIFIER||||462|HS6ST2|protein_coding|CODING|ENST00000370833|2|1),INTRON(MODIFIER||||605|HS6ST2|protein_coding|CODING|ENST00000370836|3|1),INTRON(MODIFIER||||645|HS6ST2|protein_coding|CODING|ENST00000521489|4|1),INTRON(MODIFIER|||||HS6ST2|nonsense_mediated_decay|CODING|ENST00000461959|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:0:0:0:0,0:0,0:34,34:0,0	78:2:0:0:0,0:7,7:69,71:0,0
X	134732126	.	G	C	.	PASS	NT=ref;QSS=28;QSS_NT=28;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||RP11-432N13.3|unprocessed_pseudogene|NON_CODING|ENST00000442271||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	57:0:0:0:0,0:0,0:57,57:0,0	153:0:0:0:0,0:6,6:147,147:0,0
X	135335235	.	A	G	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||858|MAP7D3|protein_coding|CODING|ENST00000370663|1|1),UPSTREAM(MODIFIER||||801|MAP7D3|protein_coding|CODING|ENST00000370660||1),UPSTREAM(MODIFIER||||841|MAP7D3|protein_coding|CODING|ENST00000370661||1),UPSTREAM(MODIFIER||||876|MAP7D3|protein_coding|CODING|ENST00000316077||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:2:0:0:34,37:0,0:0,0:0,0	80:2:0:0:74,74:0,0:4,5:0,0
X	136073616	.	C	G	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER|||||RP11-308D16.2|unprocessed_pseudogene|NON_CODING|ENST00000426943|5|1),INTRON(MODIFIER|||||RP11-308D16.4|processed_transcript|NON_CODING|ENST00000424306|3|1),INTRON(MODIFIER|||||RP11-308D16.4|processed_transcript|NON_CODING|ENST00000431464|2|1),UPSTREAM(MODIFIER|||||AL390879.1|miRNA|NON_CODING|ENST00000584720||1),UPSTREAM(MODIFIER|||||RP11-308D16.4|processed_transcript|NON_CODING|ENST00000438602||1),UPSTREAM(MODIFIER|||||RP11-308D16.4|processed_transcript|NON_CODING|ENST00000440604||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:1:0:0:0,0:36,37:0,0:0,0	60:3:0:0:0,0:51,54:6,6:0,0
X	136627061	.	G	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	28:0:0:0:0,0:0,0:28,28:0,0	85:1:0:0:0,0:0,0:76,77:8,8
X	137010579	.	G	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:1:0:0:0,0:0,0:28,29:0,0	70:2:0:0:0,1:0,0:61,62:7,7
X	137116956	.	C	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:0:0:0:0,0:30,32:0,0:0,0	85:0:0:0:0,0:80,80:5,5:0,0
X	137167005	.	T	A	.	PASS	NT=ref;QSS=26;QSS_NT=26;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	55:3:0:0:0,0:0,1:1,1:51,53	83:0:0:0:5,5:0,0:0,0:78,78
X	137193458	.	T	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	27:0:0:0:0,0:0,0:0,0:27,27	63:1:0:0:4,4:0,0:1,2:57,57
X	137352444	.	A	G	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:0:0:0:32,32:0,0:0,0:0,0	81:0:0:0:74,75:0,0:7,7:0,0
X	137655053	.	A	G	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:0:0:0:31,31:0,0:0,0:0,0	87:1:0:0:79,79:0,0:7,8:0,0
X	137824460	.	G	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||199|FGF13|protein_coding|CODING|ENST00000541469|1|1),INTRON(MODIFIER||||205|FGF13|protein_coding|CODING|ENST00000455663|3|1),INTRON(MODIFIER||||220|FGF13|protein_coding|CODING|ENST00000436198|3|1),INTRON(MODIFIER||||226|FGF13|protein_coding|CODING|ENST00000441825|1|1),INTRON(MODIFIER||||255|FGF13|protein_coding|CODING|ENST00000370603|2|1),INTRON(MODIFIER||||97|FGF13|protein_coding|CODING|ENST00000448673|3|1),UPSTREAM(MODIFIER||||192|FGF13|protein_coding|CODING|ENST00000305414||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:1:0:0:0,0:0,0:37,38:0,0	76:2:0:0:4,4:0,0:70,72:0,0
X	138047910	.	C	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||199|FGF13|protein_coding|CODING|ENST00000541469|1|1),INTRON(MODIFIER||||205|FGF13|protein_coding|CODING|ENST00000455663|2|1),INTRON(MODIFIER||||220|FGF13|protein_coding|CODING|ENST00000436198|2|1),INTRON(MODIFIER||||255|FGF13|protein_coding|CODING|ENST00000370603|1|1),INTRON(MODIFIER||||42|FGF13|protein_coding|CODING|ENST00000421460|1|1),INTRON(MODIFIER||||97|FGF13|protein_coding|CODING|ENST00000448673|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:1:0:0:0,0:28,29:0,0:0,0	73:2:0:0:9,9:62,64:0,0:0,0
X	138208172	.	T	G	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||199|FGF13|protein_coding|CODING|ENST00000541469|1|1),INTRON(MODIFIER||||220|FGF13|protein_coding|CODING|ENST00000436198|2|1),INTRON(MODIFIER||||255|FGF13|protein_coding|CODING|ENST00000370603|1|1),INTRON(MODIFIER||||42|FGF13|protein_coding|CODING|ENST00000421460|1|1),INTRON(MODIFIER||||97|FGF13|protein_coding|CODING|ENST00000448673|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:0:0:0:0,0:0,0:0,0:37,37	59:0:0:0:0,0:0,0:4,4:55,55
X	138228004	.	G	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||199|FGF13|protein_coding|CODING|ENST00000541469|1|1),INTRON(MODIFIER||||220|FGF13|protein_coding|CODING|ENST00000436198|2|1),INTRON(MODIFIER||||255|FGF13|protein_coding|CODING|ENST00000370603|1|1),INTRON(MODIFIER||||42|FGF13|protein_coding|CODING|ENST00000421460|1|1),INTRON(MODIFIER||||97|FGF13|protein_coding|CODING|ENST00000448673|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	28:0:0:0:0,0:0,0:28,28:0,0	82:0:0:0:6,6:0,0:76,76:0,0
X	138646777	.	T	A	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||423|F9|protein_coding|CODING|ENST00000394090||1),DOWNSTREAM(MODIFIER||||461|F9|protein_coding|CODING|ENST00000218099||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	43:2:0:0:0,0:0,0:0,0:41,43	82:2:0:0:7,7:0,0:0,0:73,75
X	138952941	.	C	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1113|ATP11C|protein_coding|CODING|ENST00000370557|1|1),INTRON(MODIFIER|||||ATP11C|processed_transcript|CODING|ENST00000485626|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:0:0:0:0,0:36,36:1,1:0,0	88:1:0:0:0,0:82,82:5,5:0,0
X	139088452	rs451935	G	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=139088452;RV;GMAF=0.0162749;dbSNPBuildID=80;SSR=0;SAO=0;VP=050000000001040116000100;WGT=1;VC=SNV;VLD;GNO;KGPhase1;KGPROD;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	27:2:0:0:0,0:0,2:25,32:0,0	58:2:0:0:0,0:7,16:49,55:0,0
X	139088457	rs35444220	C	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=139088457;dbSNPBuildID=126;SSR=0;SAO=0;VP=050000000001000002000100;WGT=1;VC=SNV;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	28:2:0:0:0,0:26,33:0,0:0,2	62:2:0:0:0,0:53,59:0,0:7,16
X	139316531	.	C	A	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:0:0:0:0,0:37,37:0,0:0,0	72:2:0:0:8,8:61,63:1,1:0,0
X	140343783	.	C	T	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:1:0:0:0,1:36,36:0,0:0,0	78:2:0:0:0,0:70,72:0,0:6,7
X	140438039	.	C	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:0:0:0:0,0:29,29:0,0:0,0	71:0:0:0:0,0:64,64:0,0:7,7
X	140994115	rs138660605	T	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||209|MAGEC1|protein_coding|CODING|ENST00000406005|3|1),NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|Tcc/Ccc|S111P|117|MAGEC1|protein_coding|CODING|ENST00000370511|5|1),NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|Tcc/Ccc|S309P|1142|MAGEC1|protein_coding|CODING|ENST00000285879|4|1);RSPOS=140994115;dbSNPBuildID=134;SSR=0;SAO=0;VP=050000000a05040002000100;GENEINFO=MAGEC1:9947;WGT=1;VC=SNV;NSM;REF;ASP;VLD;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:0:0:0:0,0:0,1:0,1:37,40	85:3:0:0:0,0:7,12:0,0:75,87
X	140994123	rs77196611	C	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->CG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER||||209|MAGEC1|protein_coding|CODING|ENST00000406005|3|1),SYNONYMOUS_CODING(LOW|SILENT|tcC/tcG|S113|117|MAGEC1|protein_coding|CODING|ENST00000370511|5|1),SYNONYMOUS_CODING(LOW|SILENT|tcC/tcG|S311|1142|MAGEC1|protein_coding|CODING|ENST00000285879|4|1);RSPOS=140994123;dbSNPBuildID=131;SSR=0;SAO=0;VP=050000000305070002000100;GENEINFO=MAGEC1:9947;WGT=1;VC=SNV;REF;SYN;ASP;VLD;G5A;G5;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:0:0:0:0,0:37,41:0,1:0,0	83:4:0:0:0,0:72,87:6,10:1,1
X	140994136	rs78484597	T	C	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||209|MAGEC1|protein_coding|CODING|ENST00000406005|3|1),SYNONYMOUS_CODING(LOW|SILENT|Ttg/Ctg|L118|117|MAGEC1|protein_coding|CODING|ENST00000370511|5|1),SYNONYMOUS_CODING(LOW|SILENT|Ttg/Ctg|L316|1142|MAGEC1|protein_coding|CODING|ENST00000285879|4|1);RSPOS=140994136;dbSNPBuildID=131;SSR=0;SAO=0;VP=050000000305000102000100;GENEINFO=MAGEC1:9947;WGT=1;VC=SNV;REF;SYN;ASP;GNO;OTHERKG	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:0:0:0:0,0:0,1:0,1:33,36	80:4:0:0:0,0:11,17:1,1:64,73
X	141534925	.	C	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:1:0:0:0,0:34,35:0,0:0,0	66:0:0:0:0,0:60,61:0,0:6,6
X	141766454	.	G	T	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	43:0:0:0:0,0:0,0:43,43:0,0	67:1:0:0:0,0:0,0:62,62:4,5
X	142248095	.	G	C	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:0:0:0:1,1:0,0:33,33:1,1	81:1:0:0:0,0:9,9:70,71:1,1
X	143111002	.	A	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	30:0:0:0:30,30:0,0:0,0:0,0	71:0:0:0:67,67:4,4:0,0:0,0
X	143270234	.	A	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:2:0:0:31,33:0,0:0,1:0,0	54:1:0:0:46,48:7,8:0,0:0,0
X	144924648	.	C	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	29:0:0:0:0,0:29,29:0,0:0,0	75:3:0:0:7,8:65,67:0,0:0,0
X	145793688	.	T	G	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:0:0:0:0,0:0,0:0,0:31,31	67:0:0:0:0,0:0,0:6,6:61,61
X	145971818	.	A	G	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:0:0:0:36,36:0,0:0,0:0,0	76:1:0:0:70,74:0,0:5,5:0,0
X	146144183	.	G	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	28:0:0:0:0,0:0,0:28,28:0,0	90:3:0:0:6,6:0,0:81,82:0,2
X	146278514	.	A	T	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||MIR513B|miRNA|NON_CODING|ENST00000385136||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:1:0:0:39,40:0,0:0,0:0,0	83:1:0:0:74,75:0,0:0,0:8,8
X	146377486	.	G	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	27:1:0:0:0,0:0,0:26,27:0,0	63:1:0:0:0,0:0,0:55,55:7,7
X	146661087	.	G	A	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	44:0:0:0:0,0:0,0:44,44:0,0	70:0:0:0:6,6:0,0:64,64:0,0
X	147069925	.	A	G	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||255|FMR1NB|protein_coding|CODING|ENST00000370467|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:0:0:0:31,31:0,0:0,0:0,0	78:2:0:0:70,73:0,0:6,6:0,0
X	147673920	.	T	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1276|AFF2|protein_coding|CODING|ENST00000370457|1|1),INTRON(MODIFIER||||1278|AFF2|protein_coding|CODING|ENST00000342251|1|1),INTRON(MODIFIER||||1311|AFF2|protein_coding|CODING|ENST00000370460|1|1),INTRON(MODIFIER||||427|AFF2|protein_coding|CODING|ENST00000370458|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:0:0:0:0,0:0,0:0,0:31,31	53:2:0:0:0,0:5,5:0,1:46,47
X	147816102	.	C	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1276|AFF2|protein_coding|CODING|ENST00000370457|3|1),INTRON(MODIFIER||||1278|AFF2|protein_coding|CODING|ENST00000342251|3|1),INTRON(MODIFIER||||1311|AFF2|protein_coding|CODING|ENST00000370460|3|1),INTRON(MODIFIER||||427|AFF2|protein_coding|CODING|ENST00000370458|3|1),INTRON(MODIFIER||||952|AFF2|protein_coding|CODING|ENST00000286437|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	27:0:0:0:0,0:27,27:0,0:0,0	74:0:0:0:4,4:70,70:0,0:0,0
X	147905481	.	C	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||1276|AFF2|protein_coding|CODING|ENST00000370457|4|1),INTRON(MODIFIER||||1278|AFF2|protein_coding|CODING|ENST00000342251|4|1),INTRON(MODIFIER||||1311|AFF2|protein_coding|CODING|ENST00000370460|4|1),INTRON(MODIFIER||||427|AFF2|protein_coding|CODING|ENST00000370458|4|1),INTRON(MODIFIER||||952|AFF2|protein_coding|CODING|ENST00000286437|2|1),UPSTREAM(MODIFIER|||||7SK|misc_RNA|NON_CODING|ENST00000410381||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:1:0:0:0,0:30,31:0,0:0,0	69:1:0:0:0,0:62,62:0,0:6,6
X	149800785	.	C	T	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||102|MTM1|protein_coding|CODING|ENST00000424519|4|1),INTRON(MODIFIER||||416|MTM1|protein_coding|CODING|ENST00000542741|5|1),INTRON(MODIFIER||||488|MTM1|protein_coding|CODING|ENST00000543350|4|1),INTRON(MODIFIER||||566|MTM1|protein_coding|CODING|ENST00000413012|5|1),INTRON(MODIFIER||||603|MTM1|protein_coding|CODING|ENST00000370396|6|1),INTRON(MODIFIER|||||MTM1|processed_transcript|CODING|ENST00000306167|5|1),INTRON(MODIFIER|||||MTM1|processed_transcript|CODING|ENST00000490530|5|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:0:0:0:0,0:36,36:0,0:0,0	71:0:0:0:0,0:65,65:0,0:6,6
X	150632827	.	C	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:0:0:0:0,0:31,31:0,0:0,0	67:1:0:0:0,1:59,59:0,0:7,7
X	150893021	.	C	T	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||183|FATE1|protein_coding|CODING|ENST00000370350||1),DOWNSTREAM(MODIFIER||||80|FATE1|protein_coding|CODING|ENST00000417321||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:1:0:0:0,0:37,38:0,0:0,0	74:0:0:0:0,0:69,69:0,0:5,5
X	151640358	.	C	A	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=CC->AC;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:0:0:0:0,0:37,37:0,0:0,0	81:4:0:0:8,8:69,71:0,2:0,0
X	152203435	.	T	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||U82671.8|unprocessed_pseudogene|NON_CODING|ENST00000452967||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	28:0:0:0:0,0:0,0:0,0:28,28	91:1:0:0:5,5:0,0:0,0:85,86
X	152862289	.	C	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||140|FAM58A|protein_coding|CODING|ENST00000482182|1|1),INTRON(MODIFIER||||246|FAM58A|protein_coding|CODING|ENST00000406277|3|1),INTRON(MODIFIER|||||FAM58A|processed_transcript|CODING|ENST00000276345|1|1),INTRON(MODIFIER|||||FAM58A|processed_transcript|CODING|ENST00000370171|1|1),INTRON(MODIFIER|||||FAM58A|processed_transcript|CODING|ENST00000370173|1|1),INTRON(MODIFIER|||||FAM58A|processed_transcript|CODING|ENST00000370175|1|1),INTRON(MODIFIER|||||FAM58A|processed_transcript|CODING|ENST00000428722|1|1),INTRON(MODIFIER|||||FAM58A|processed_transcript|CODING|ENST00000465867|2|1),INTRON(MODIFIER|||||FAM58A|processed_transcript|CODING|ENST00000470284|1|1),UPSTREAM(MODIFIER|||||RP11-66N11.8|antisense|NON_CODING|ENST00000562749||1),UPSTREAM(MODIFIER|||||RP11-66N11.8|antisense|NON_CODING|ENST00000569906||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	31:0:0:0:0,0:31,32:0,0:0,0	73:0:0:0:4,4:69,70:0,0:0,0
X	153271162	.	A	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER||||234|IRAK1|protein_coding|CODING|ENST00000444230||1),DOWNSTREAM(MODIFIER||||633|IRAK1|protein_coding|CODING|ENST00000369974||1),DOWNSTREAM(MODIFIER||||693|IRAK1|protein_coding|CODING|ENST00000393682||1),DOWNSTREAM(MODIFIER||||712|IRAK1|protein_coding|CODING|ENST00000369980||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	25:0:0:0:24,24:1,1:0,0:0,0	57:3:0:0:46,50:0,0:8,9:0,0
X	153589615	.	C	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||FLNA|retained_intron|CODING|ENST00000465144||1),INTRON(MODIFIER||||2607|FLNA|protein_coding|CODING|ENST00000344736|20|1),INTRON(MODIFIER||||2639|FLNA|protein_coding|CODING|ENST00000360319|20|1),INTRON(MODIFIER||||2639|FLNA|protein_coding|CODING|ENST00000422373|21|1),INTRON(MODIFIER||||2647|FLNA|protein_coding|CODING|ENST00000369850|21|1),INTRON(MODIFIER|||||FLNA|nonsense_mediated_decay|CODING|ENST00000420627|20|1),UPSTREAM(MODIFIER||||780|FLNA|protein_coding|CODING|ENST00000369856||1),UPSTREAM(MODIFIER|||||FLNA|processed_transcript|CODING|ENST00000466319||1),UPSTREAM(MODIFIER|||||FLNA|retained_intron|CODING|ENST00000490936||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	28:0:0:0:0,0:28,29:0,0:0,0	63:3:0:0:5,5:55,59:0,0:0,0
X	153751361	.	T	C	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||WI2-89031B12.1|sense_overlapping|NON_CODING|ENST00000567614||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:0:0:0:0,0:0,0:1,1:39,40	71:1:0:0:0,0:4,4:0,0:66,67
MT	7395	.	T	C	.	PASS	NT=ref;QSS=1462;QSS_NT=1462;SGT=TT->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=DOWNSTREAM(MODIFIER||||317|MT-ND1|protein_coding|CODING|ENST00000361390||1),DOWNSTREAM(MODIFIER||||346|MT-ND2|protein_coding|CODING|ENST00000361453||1),DOWNSTREAM(MODIFIER|||||J01415.13|Mt_tRNA|NON_CODING|ENST00000387416||1),DOWNSTREAM(MODIFIER|||||J01415.1|Mt_tRNA|NON_CODING|ENST00000386347||1),DOWNSTREAM(MODIFIER|||||J01415.4|Mt_rRNA|NON_CODING|ENST00000387347||1),DOWNSTREAM(MODIFIER|||||J01415.5|Mt_tRNA|NON_CODING|ENST00000387365||1),DOWNSTREAM(MODIFIER|||||J01415.7|Mt_tRNA|NON_CODING|ENST00000387377||1),DOWNSTREAM(MODIFIER|||||J01415.8|Mt_tRNA|NON_CODING|ENST00000387382||1),NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|Tgc/Cgc|C498R|513|MT-CO1|protein_coding|CODING|ENST00000361624|1|1),UPSTREAM(MODIFIER||||114|MT-ND3|protein_coding|CODING|ENST00000361227||1),UPSTREAM(MODIFIER||||226|MT-ATP6|protein_coding|CODING|ENST00000361899||1),UPSTREAM(MODIFIER||||227|MT-CO2|protein_coding|CODING|ENST00000361739||1),UPSTREAM(MODIFIER||||260|MT-CO3|protein_coding|CODING|ENST00000362079||1),UPSTREAM(MODIFIER||||458|MT-ND4|protein_coding|CODING|ENST00000361381||1),UPSTREAM(MODIFIER||||603|MT-ND5|protein_coding|CODING|ENST00000361567||1),UPSTREAM(MODIFIER||||68|J01415.25|protein_coding|CODING|ENST00000361851||1),UPSTREAM(MODIFIER||||98|MT-ND4L|protein_coding|CODING|ENST00000361335||1),UPSTREAM(MODIFIER|||||J01415.10|Mt_tRNA|NON_CODING|ENST00000387400||1),UPSTREAM(MODIFIER|||||J01415.11|Mt_tRNA|NON_CODING|ENST00000387405||1),UPSTREAM(MODIFIER|||||J01415.12|Mt_tRNA|NON_CODING|ENST00000387409||1),UPSTREAM(MODIFIER|||||J01415.14|Mt_tRNA|NON_CODING|ENST00000387419||1),UPSTREAM(MODIFIER|||||J01415.15|Mt_tRNA|NON_CODING|ENST00000387421||1),UPSTREAM(MODIFIER|||||J01415.16|Mt_tRNA|NON_CODING|ENST00000387429||1),UPSTREAM(MODIFIER|||||J01415.17|Mt_tRNA|NON_CODING|ENST00000387439||1),UPSTREAM(MODIFIER|||||J01415.18|Mt_tRNA|NON_CODING|ENST00000387441||1),UPSTREAM(MODIFIER|||||J01415.19|Mt_tRNA|NON_CODING|ENST00000387449||1),UPSTREAM(MODIFIER|||||J01415.20|Mt_tRNA|NON_CODING|ENST00000387456||1),UPSTREAM(MODIFIER|||||J01415.6|Mt_tRNA|NON_CODING|ENST00000387372||1),UPSTREAM(MODIFIER|||||J01415.9|Mt_tRNA|NON_CODING|ENST00000387392||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	3582:58:0:0:1,2:15,22:3,8:3505,3566	10000:113:0:0:8,11:265,281:22,31:9592,9695
GL000226.1	960	.	C	G	.	PASS	NT=ref;QSS=67;QSS_NT=67;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	1325:51:0:0:21,27:1218,1334:34,41:1,3	2743:96:0:0:25,36:2514,2734:105,116:3,8
GL000226.1	13037	.	G	C	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	88:0:0:0:0,0:2,2:86,95:0,0	143:6:0:0:0,0:12,16:125,148:0,1
GL000229.1	3990	.	T	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	105:1:0:0:1,2:0,0:0,2:103,129	234:1:0:0:8,10:0,0:0,0:225,294
GL000229.1	10886	.	T	C	.	PASS	NT=ref;QSS=32;QSS_NT=32;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	144:2:0:0:0,0:0,2:0,0:142,167	258:0:0:0:0,0:8,15:0,0:250,287
GL000229.1	11751	.	A	G	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	170:2:0:0:168,220:0,0:0,3:0,0	403:8:0:0:385,466:0,0:10,16:0,0
GL000229.1	13164	.	A	G	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||CT978678.1|miRNA|NON_CODING|ENST00000459109||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	104:2:0:0:102,115:0,1:0,0:0,1	250:2:0:0:238,281:1,1:9,24:0,0
GL000231.1	2613	.	A	C	.	PASS	NT=ref;QSS=23;QSS_NT=19;SGT=AA->AC;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	117:3:0:0:108,140:2,4:0,0:4,9	299:11:0:0:256,329:20,23:0,0:12,16
GL000235.1	23065	.	T	C	.	PASS	NT=ref;QSS=27;QSS_NT=27;SGT=TT->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	108:2:0:0:0,0:1,1:0,0:105,113	198:1:0:0:0,0:9,9:0,0:188,214
GL000235.1	24417	.	A	G	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	100:6:0:0:93,103:0,2:1,2:0,1	283:4:0:0:266,294:2,2:11,21:0,1
GL000235.1	25838	.	C	A	.	PASS	NT=ref;QSS=30;QSS_NT=30;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	60:0:0:0:0,0:60,69:0,0:0,0	124:1:0:0:7,8:116,132:0,0:0,0
GL000235.1	29225	.	G	A	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=GG->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	89:0:0:0:1,1:0,0:87,103:1,1	211:1:0:0:9,9:0,0:201,231:0,0
GL000235.1	29747	.	C	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	129:5:0:0:0,1:123,137:0,0:1,2	378:5:0:0:1,2:362,394:0,0:10,13
GL000235.1	31622	.	A	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	84:0:0:0:83,93:0,0:0,0:1,2	181:1:0:0:172,195:0,0:0,0:8,11
GL000203.1	33039	.	G	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	35:2:1:0:0,0:0,0:33,35:0,0	84:4:0:0:4,6:0,1:76,78:0,0
GL000234.1	3738	.	T	C	.	PASS	NT=ref;QSS=60;QSS_NT=60;SGT=TT->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	292:5:0:0:0,0:1,3:0,1:286,333	633:6:0:0:0,0:14,19:0,0:613,723
GL000234.1	3739	.	G	A	.	PASS	NT=ref;QSS=65;QSS_NT=65;SGT=GG->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	289:5:0:0:1,3:0,0:283,331:0,0	632:6:0:0:14,19:0,0:611,721:1,1
GL000234.1	9095	.	G	A	.	PASS	NT=ref;QSS=27;QSS_NT=27;SGT=GG->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	173:6:0:0:2,6:0,1:165,183:0,0	378:11:0:0:15,29:0,0:352,387:0,1
GL000232.1	1816	.	G	C	.	PASS	NT=ref;QSS=34;QSS_NT=34;SGT=GG->CG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	266:13:0:0:0,0:2,5:251,304:0,0	735:35:0:0:0,0:20,27:680,794:0,0
GL000232.1	9020	.	T	C	.	PASS	NT=ref;QSS=31;QSS_NT=31;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	158:21:0:0:0,0:1,3:0,1:136,164	329:31:0:0:0,0:11,19:1,1:286,346
GL000232.1	28426	.	C	G	.	PASS	NT=ref;QSS=33;QSS_NT=33;SGT=CC->CG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	353:6:0:0:0,0:342,362:5,8:0,0	686:6:0:0:0,1:659,691:20,25:1,1
GL000232.1	36423	.	G	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	257:15:0:0:0,0:0,0:238,269:4,5	597:45:0:0:0,0:0,0:533,629:19,30
GL000232.1	38147	.	C	T	.	PASS	NT=ref;QSS=47;QSS_NT=47;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	217:3:0:0:0,1:211,253:1,2:2,4	458:5:0:0:0,0:429,511:0,0:24,38
GL000240.1	6427	.	C	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=UPSTREAM(MODIFIER|||||CU463998.1|miRNA|NON_CODING|ENST00000460303||1),UPSTREAM(MODIFIER|||||CU463998.2|miRNA|NON_CODING|ENST00000466464||1),UPSTREAM(MODIFIER|||||CU463998.3|miRNA|NON_CODING|ENST00000464427||1),UPSTREAM(MODIFIER|||||CU463998.4|miRNA|NON_CODING|ENST00000579797||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:0:0:0:0,0:39,46:0,0:0,0	126:2:0:0:0,0:117,141:0,0:7,9
GL000240.1	28443	.	C	A	.	PASS	NT=ref;QSS=24;QSS_NT=24;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	73:2:0:0:0,0:71,75:0,0:0,0	180:1:0:0:8,15:171,186:0,0:0,0
GL000241.1	2950	.	C	T	.	PASS	NT=ref;QSS=33;QSS_NT=33;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	272:37:0:0:0,1:232,291:0,0:3,4	572:72:0:0:0,1:487,625:1,2:12,20
GL000241.1	3316	.	G	A	.	PASS	NT=ref;QSS=29;QSS_NT=29;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	244:27:1:0:2,5:0,0:213,285:2,3	523:48:0:0:23,25:0,0:452,595:0,0
GL000241.1	9265	.	G	A	.	PASS	NT=ref;QSS=43;QSS_NT=43;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||CU459211.1|miRNA|NON_CODING|ENST00000410738||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	218:10:0:0:1,3:0,0:207,257:0,0	523:19:0:0:15,18:1,2:487,581:1,1
GL000241.1	11271	.	T	A	.	PASS	NT=ref;QSS=41;QSS_NT=41;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||CU459211.1|miRNA|NON_CODING|ENST00000410738||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	134:5:0:0:1,1:1,2:0,1:127,156	298:2:0:0:13,16:0,0:0,0:283,326
GL000241.1	12468	.	G	A	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=UPSTREAM(MODIFIER|||||CU459211.1|miRNA|NON_CODING|ENST00000410738||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	122:2:0:0:2,4:0,0:117,133:1,1	288:4:0:0:10,16:0,0:274,323:0,0
GL000241.1	21478	.	G	A	.	PASS	NT=ref;QSS=57;QSS_NT=57;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	231:3:0:0:2,3:0,0:226,271:0,0	579:4:0:0:17,21:0,0:557,638:1,1
GL000241.1	21524	.	A	G	.	PASS	NT=ref;QSS=63;QSS_NT=63;SGT=AA->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	183:4:0:0:177,207:2,3:0,2:0,0	469:3:0:0:442,499:3,3:20,23:1,2
GL000241.1	21763	.	C	T	.	PASS	NT=ref;QSS=58;QSS_NT=58;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	124:2:0:0:0,0:122,157:0,0:0,1	319:9:0:0:0,0:297,370:0,0:13,22
GL000241.1	22589	.	G	C	.	PASS	NT=ref;QSS=47;QSS_NT=47;SGT=GG->CG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	153:3:0:0:0,0:0,9:150,172:0,0	349:3:0:0:0,0:15,31:330,393:1,1
GL000241.1	23165	.	G	A	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	94:1:0:0:0,2:0,0:93,109:0,0	252:7:0:0:13,20:0,0:232,280:0,0
GL000241.1	28296	.	G	A	.	PASS	NT=ref;QSS=44;QSS_NT=44;SGT=GG->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	125:0:0:0:0,3:0,0:125,154:0,0	285:2:0:0:10,17:0,0:273,327:0,0
GL000241.1	28370	.	A	G	.	PASS	NT=ref;QSS=29;QSS_NT=29;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	105:2:0:0:102,130:0,0:1,2:0,0	235:6:0:0:221,263:0,1:8,10:0,0
GL000241.1	36020	.	C	A	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=CC->AC;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	114:2:0:0:1,6:111,141:0,0:0,0	326:6:0:0:11,25:308,369:1,1:0,0
GL000241.1	36177	.	C	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	142:3:0:0:0,0:139,167:0,0:0,6	331:5:0:0:2,3:308,361:0,0:16,25
GL000241.1	39107	.	G	A	.	PASS	NT=ref;QSS=25;QSS_NT=25;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	137:4:0:0:1,1:0,0:131,155:1,2	331:2:0:0:10,11:0,0:319,360:0,1
GL000241.1	39546	.	C	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	123:0:0:0:0,1:121,146:0,1:2,4	243:3:0:0:0,1:228,279:0,0:12,17
GL000241.1	39565	.	A	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	127:0:0:0:125,162:0,0:2,3:0,0	239:5:0:0:220,277:0,1:14,18:0,0
GL000241.1	41629	.	A	G	.	PASS	NT=ref;QSS=24;QSS_NT=24;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	128:8:0:0:119,138:0,0:1,2:0,0	233:5:0:0:214,241:1,1:13,17:0,0
GL000241.1	41763	.	T	A	.	PASS	NT=ref;QSS=43;QSS_NT=43;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	161:3:0:0:1,1:0,0:1,1:156,199	340:1:0:0:17,20:0,0:0,0:322,420
GL000241.1	41802	.	A	T	.	PASS	NT=ref;QSS=37;QSS_NT=37;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	129:34:0:0:93,163:0,0:1,1:1,1	270:50:0:0:208,324:1,1:0,0:11,13
GL000241.1	41818	.	T	C	.	PASS	NT=ref;QSS=57;QSS_NT=57;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	124:4:0:0:0,0:0,0:0,0:120,157	269:9:0:0:1,1:10,12:2,2:247,331
GL000243.1	34985	.	C	T	.	PASS	NT=ref;QSS=26;QSS_NT=26;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	54:2:0:0:0,0:52,68:0,1:0,1	100:1:0:0:0,0:92,123:0,0:7,11
GL000243.1	35132	.	A	G	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:0:0:0:33,48:0,0:0,2:0,0	97:0:0:0:87,110:0,0:10,26:0,0
GL000243.1	39891	.	G	A	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	34:0:0:0:0,0:0,0:34,48:0,0	72:1:0:0:7,9:0,0:64,91:0,0
GL000230.1	12040	.	C	T	.	PASS	NT=ref;QSS=24;QSS_NT=24;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	49:1:0:0:0,0:48,50:0,0:0,0	91:3:0:0:1,1:80,82:0,1:7,7
GL000230.1	12047	.	T	A	.	PASS	NT=ref;QSS=24;QSS_NT=24;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	51:1:0:0:0,0:1,1:1,1:48,50	89:2:0:0:8,8:0,0:0,0:79,81
GL000237.1	14523	.	G	A	.	PASS	NT=ref;QSS=31;QSS_NT=31;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	105:3:0:0:1,2:0,0:101,109:0,0	172:2:0:0:10,10:0,1:160,168:0,0
GL000237.1	14831	.	A	G	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=AA->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	161:2:0:0:157,188:0,0:2,5:0,1	341:3:0:0:317,368:0,0:21,26:0,0
GL000198.1	75329	.	A	G	.	PASS	NT=ref;QSS=24;QSS_NT=24;SGT=AA->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	218:12:0:0:202,243:1,1:3,7:0,0	436:15:0:0:408,483:1,1:12,18:0,0
GL000208.1	16941	.	G	A	.	PASS	NT=ref;QSS=26;QSS_NT=26;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	51:0:0:0:0,0:0,0:51,52:0,0	130:0:0:0:8,8:0,0:122,124:0,0
GL000208.1	18145	.	A	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	65:3:0:0:61,64:0,0:0,0:1,3	119:12:0:0:99,108:6,18:0,0:2,9
GL000208.1	18166	.	C	G	.	PASS	NT=ref;QSS=32;QSS_NT=32;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	69:3:0:0:0,1:66,76:0,0:0,0	148:10:0:0:0,0:127,160:11,16:0,0
GL000208.1	18213	.	G	T	.	PASS	NT=ref;QSS=32;QSS_NT=32;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	74:9:0:0:0,0:0,3:65,83:0,0	170:22:0:0:0,0:0,0:139,193:9,17
GL000208.1	44438	.	G	C	.	PASS	NT=ref;QSS=46;QSS_NT=43;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	181:28:0:0:3,11:1,6:148,266:1,5	343:35:0:0:2,24:18,34:288,544:0,6
GL000208.1	54712	.	C	A	.	PASS	NT=ref;QSS=32;QSS_NT=32;SGT=CC->AC;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	96:12:0:0:0,7:84,175:0,0:0,1	252:61:0:0:10,42:177,451:0,1:4,9
GL000208.1	73263	.	T	G	.	PASS	NT=ref;QSS=26;QSS_NT=26;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	79:0:0:0:0,4:0,0:0,0:79,88	161:3:0:0:1,6:0,0:6,11:151,163
GL000208.1	73268	.	A	T	.	PASS	NT=ref;QSS=38;QSS_NT=38;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	78:0:0:0:78,90:0,0:0,0:0,0	163:3:0:0:154,171:0,0:0,0:6,11
GL000208.1	73276	.	G	A	.	PASS	NT=ref;QSS=35;QSS_NT=35;SGT=GG->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	75:2:0:0:0,1:0,0:73,86:0,0	169:1:0:0:8,11:0,0:160,177:0,0
GL000208.1	73354	.	C	G	.	PASS	NT=ref;QSS=29;QSS_NT=29;SGT=CC->CG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	74:0:0:0:0,0:74,79:0,2:0,0	170:1:0:0:2,2:159,165:8,12:0,0
GL000208.1	78339	.	G	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	44:0:0:0:0,1:0,0:44,44:0,0	90:1:0:0:7,13:0,0:82,83:0,0
GL000228.1	24879	.	G	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||5S_rRNA|rRNA|NON_CODING|ENST00000458805||1),DOWNSTREAM(MODIFIER|||||5S_rRNA|rRNA|NON_CODING|ENST00000459052||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	20:2:0:0:0,0:0,0:18,22:0,0	32:1:0:0:6,7:0,0:25,32:0,0
GL000228.1	43762	.	C	A	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	33:0:0:0:0,0:33,49:0,0:0,0	89:2:0:0:8,13:79,97:0,0:0,0
GL000214.1	13283	.	C	A	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=CC->AC;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	99:1:0:0:1,3:97,111:0,0:0,0	252:5:0:0:12,15:234,249:1,1:0,0
GL000214.1	14749	.	G	T	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	124:2:0:0:1,1:0,0:121,126:0,1	261:3:0:0:0,0:0,0:250,255:8,12
GL000214.1	16543	.	G	T	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=GG->GT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	138:3:0:0:0,0:0,0:134,144:1,3	297:5:0:0:0,0:0,0:281,307:11,13
GL000214.1	16550	.	C	A	.	PASS	NT=ref;QSS=30;QSS_NT=30;SGT=CC->AC;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	144:3:0:0:1,2:140,150:0,1:0,0	298:4:0:0:10,12:284,311:0,0:0,0
GL000214.1	43741	.	T	C	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=TT->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	58:2:0:0:0,0:0,3:0,0:56,58	170:2:0:0:0,0:13,16:1,1:154,156
GL000214.1	67244	.	A	G	.	PASS	NT=ref;QSS=34;QSS_NT=34;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	118:6:0:0:111,116:0,1:1,1:0,0	262:6:0:0:242,246:2,4:12,23:0,1
GL000214.1	93388	.	G	A	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	85:1:0:0:1,1:0,0:82,88:1,1	158:6:0:0:21,22:0,0:131,149:0,0
GL000214.1	103325	.	C	A	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=CC->AC;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	68:2:0:0:0,2:66,73:0,0:0,0	152:4:0:0:8,11:140,164:0,0:0,0
GL000214.1	109125	.	T	C	.	PASS	NT=ref;QSS=30;QSS_NT=30;SGT=TT->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	166:2:0:0:0,0:1,7:0,0:163,174	327:11:0:0:0,0:15,32:3,4:298,339
GL000214.1	109365	.	C	T	.	PASS	NT=ref;QSS=28;QSS_NT=28;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	112:6:0:0:0,1:105,116:0,0:1,1	200:10:0:0:0,0:183,201:0,1:7,10
GL000214.1	113737	.	C	A	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=CC->AC;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	113:1:0:0:1,2:110,120:1,1:0,0	200:5:0:0:9,15:186,210:0,0:0,0
GL000214.1	113759	.	C	T	.	PASS	NT=ref;QSS=24;QSS_NT=24;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	111:1:0:0:0,0:108,118:1,1:1,1	213:3:0:0:1,1:201,224:0,0:8,12
GL000214.1	113972	.	A	T	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	113:2:0:0:110,124:0,0:1,1:0,0	192:10:0:0:174,208:2,2:0,0:6,11
GL000214.1	118097	.	A	G	.	PASS	NT=ref;QSS=29;QSS_NT=29;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	166:8:0:0:155,262:0,0:3,5:0,0	312:14:0:0:283,457:0,0:15,22:0,1
GL000214.1	121179	.	T	A	.	PASS	NT=ref;QSS=42;QSS_NT=42;SGT=TT->AT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	235:2:0:0:2,7:0,0:0,0:231,287	435:5:0:0:24,28:1,2:0,0:405,511
GL000214.1	125475	.	A	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	218:9:0:0:208,293:0,1:1,3:0,0	496:11:0:0:466,620:2,2:17,19:0,0
GL000214.1	126321	.	T	C	.	PASS	NT=ref;QSS=49;QSS_NT=49;SGT=TT->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	349:18:3:0:0,2:4,6:1,4:326,450	752:32:3:0:0,0:19,27:0,2:701,943
GL000214.1	132324	.	G	C	.	PASS	NT=ref;QSS=77;QSS_NT=77;SGT=GG->CG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	314:11:0:0:0,0:2,7:300,401:1,1	722:7:0:0:0,0:20,27:695,898:0,0
GL000214.1	135783	.	C	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	42:1:0:0:0,1:41,77:0,0:0,0	103:1:0:0:8,20:94,186:0,0:0,0
GL000214.1	135796	.	C	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:1:0:0:0,1:39,73:0,0:0,1	104:1:0:0:0,0:95,186:0,0:8,20
GL000214.1	135806	.	T	C	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:1:0:0:0,1:0,1:0,0:39,73	103:0:0:0:0,0:9,20:0,0:94,184
GL000214.1	137081	.	G	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->CG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	222:14:0:0:0,0:4,8:198,295:6,8	543:28:0:0:0,1:15,21:487,701:13,17
GL000221.1	60785	.	G	T	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=GG->GT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	71:1:0:0:0,0:0,0:70,80:0,2	194:3:0:0:0,0:1,1:171,208:19,24
GL000218.1	3707	.	A	G	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	114:0:0:0:113,113:0,0:1,1:0,0	272:0:0:0:262,262:1,1:9,15:0,0
GL000218.1	18509	.	C	G	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=CC->CG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	102:1:0:0:1,2:99,106:1,4:0,0	214:1:0:0:0,0:205,220:8,9:0,0
GL000218.1	24307	.	T	A	.	PASS	NT=ref;QSS=39;QSS_NT=39;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	114:4:0:0:1,1:0,0:0,1:109,115	245:5:0:0:9,11:0,0:2,2:229,234
GL000218.1	32756	.	T	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	32:1:0:0:0,0:1,1:1,1:29,31	106:2:0:0:1,1:22,28:2,2:79,81
GL000218.1	71449	.	C	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER||||222|AL354822.1|protein_coding|CODING|ENST00000400681|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	110:0:0:0:0,1:109,133:0,0:1,2	264:3:0:0:0,0:251,287:0,0:10,13
GL000218.1	107719	.	A	G	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	75:1:0:0:73,77:0,0:1,1:0,0	134:3:0:0:123,131:0,1:8,11:0,0
GL000218.1	110138	.	G	C	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	87:0:0:0:0,0:1,1:85,92:1,1	152:2:0:0:0,0:8,9:141,152:1,1
GL000218.1	147600	.	T	C	.	PASS	NT=ref;QSS=69;QSS_NT=69;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	151:2:0:0:0,0:0,0:0,0:149,163	328:5:0:0:1,1:11,11:1,1:310,344
GL000218.1	147661	.	T	C	.	PASS	NT=ref;QSS=48;QSS_NT=48;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	121:1:0:0:0,0:1,1:0,0:119,130	285:4:0:0:0,0:10,10:0,0:271,297
GL000220.1	89146	.	T	G	.	PASS	NT=ref;QSS=46;QSS_NT=46;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	213:3:0:0:0,0:0,0:0,1:210,212	450:6:0:0:0,0:0,0:13,17:431,438
GL000220.1	89173	.	T	G	.	PASS	NT=ref;QSS=58;QSS_NT=58;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	214:2:0:0:1,1:0,0:0,0:211,213	450:7:0:0:1,1:0,0:12,17:430,437
GL000220.1	89203	.	C	T	.	PASS	NT=ref;QSS=26;QSS_NT=26;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	197:2:0:0:0,1:195,196:0,0:0,0	439:3:0:0:0,0:425,427:0,1:11,16
GL000220.1	89214	.	C	T	.	PASS	NT=ref;QSS=30;QSS_NT=30;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	206:3:0:0:1,1:202,205:0,0:0,0	432:4:0:0:1,1:416,419:0,0:11,17
GL000211.1	48260	.	G	C	.	PASS	NT=ref;QSS=23;QSS_NT=23;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	19:0:0:0:0,0:0,0:19,22:0,0	42:3:0:0:0,0:11,12:28,36:0,0
GL000211.1	69942	.	A	C	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	37:1:0:0:36,39:0,0:0,0:0,0	92:2:0:0:81,96:9,9:0,0:0,0
GL000211.1	109375	.	C	T	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||U6|snRNA|NON_CODING|ENST00000516787||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	43:0:0:0:0,0:43,44:0,0:0,0	89:1:0:0:0,0:79,79:0,0:9,13
GL000211.1	109378	.	G	T	.	PASS	NT=ref;QSS=23;QSS_NT=23;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||U6|snRNA|NON_CODING|ENST00000516787||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	45:1:0:0:0,0:0,0:44,46:0,0	91:1:0:0:0,0:0,0:81,81:9,13
GL000211.1	109521	.	C	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||U6|snRNA|NON_CODING|ENST00000516787||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	36:2:0:0:0,0:33,35:1,1:0,0	84:1:0:0:0,0:77,83:0,0:6,8
GL000199.1	9018	.	A	G	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||BX088702.2|miRNA|NON_CODING|ENST00000492089||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:4:0:0:36,57:0,0:0,1:0,0	101:8:0:0:83,108:0,0:10,22:0,0
GL000199.1	9169	.	A	C	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||BX088702.2|miRNA|NON_CODING|ENST00000492089||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	40:1:0:0:39,44:0,0:0,0:0,0	103:1:0:0:95,102:7,7:0,0:0,0
GL000199.1	12755	.	G	T	.	PASS	NT=ref;QSS=30;QSS_NT=30;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	189:55:16:0:0,5:0,6:133,314:1,6	448:126:43:0:0,11:1,11:304,785:17,32
GL000199.1	19505	.	A	G	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:2:0:0:36,39:0,0:0,0:0,0	82:1:0:0:77,80:0,0:4,5:0,0
GL000199.1	19537	.	A	G	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:1:0:0:36,38:0,0:0,0:1,1	84:3:0:0:77,81:0,1:4,4:0,0
GL000199.1	48387	.	G	A	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	19:1:0:0:0,0:0,0:18,22:0,0	31:2:0:0:8,10:0,0:20,32:1,7
GL000199.1	60669	.	C	A	.	PASS	NT=ref;QSS=34;QSS_NT=34;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	215:13:7:0:4,8:194,412:4,11:0,1	423:27:5:0:17,31:370,799:9,17:0,2
GL000199.1	94659	.	G	T	.	PASS	NT=ref;QSS=85;QSS_NT=38;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	370:37:0:0:1,11:11,20:321,659:0,16	741:69:0:0:19,40:13,24:617,1189:23,60
GL000199.1	94675	.	T	G	.	PASS	NT=ref;QSS=75;QSS_NT=75;SGT=TT->GT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	451:77:0:0:1,3:0,1:1,16:372,949	962:139:0:0:0,3:3,6:29,71:791,1806
GL000199.1	102159	.	C	T	.	PASS	NT=ref;QSS=30;QSS_NT=30;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	70:9:0:0:0,0:61,185:0,0:0,5	136:9:0:0:0,0:113,317:1,1:13,20
GL000199.1	118696	.	T	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	110:3:0:0:0,0:0,8:0,1:107,184	202:6:0:0:0,0:9,36:0,0:187,327
GL000199.1	120849	.	A	G	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=AA->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	555:18:0:0:532,761:0,1:5,17:0,0	1272:34:1:0:1208,1725:1,3:29,56:0,1
GL000199.1	166898	.	C	T	.	PASS	NT=ref;QSS=24;QSS_NT=24;SGT=CC->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	279:5:0:0:0,0:271,403:0,1:3,5	541:8:0:0:0,0:514,746:0,1:19,22
GL000217.1	86972	.	G	A	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	16:0:0:0:0,0:0,0:16,22:0,0	58:0:0:0:19,24:0,0:39,51:0,0
GL000216.1	21556	.	T	A	.	PASS	NT=ref;QSS=24;QSS_NT=24;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	59:11:1:0:0,3:0,0:0,0:48,181	161:19:0:0:8,20:0,5:0,0:134,376
GL000216.1	69243	.	C	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->AC;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	54:3:0:0:0,5:51,112:0,2:0,0	97:15:0:0:5,13:77,186:0,1:0,0
GL000216.1	74690	.	C	T	.	PASS	NT=ref;QSS=29;QSS_NT=29;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	76:17:0:0:0,0:59,103:0,0:0,3	188:47:0:0:0,0:133,228:0,0:8,16
GL000216.1	100928	.	T	C	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=TT->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	106:1:0:0:0,0:2,3:0,0:103,115	264:2:0:0:0,0:11,11:0,0:251,297
GL000216.1	121140	.	C	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->AC;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	65:1:0:0:0,2:64,65:0,0:0,0	119:1:0:0:7,14:111,111:0,0:0,1
GL000216.1	139575	.	C	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	45:10:0:0:0,0:35,81:0,0:0,0	86:20:0:0:5,9:61,136:0,1:0,0
GL000216.1	141081	.	G	A	.	PASS	NT=ref;QSS=41;QSS_NT=41;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	247:9:0:0:4,5:2,2:232,373:0,3	475:22:0:0:18,25:4,6:431,705:0,5
GL000216.1	141454	.	G	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	48:0:0:0:0,0:0,0:48,77:0,0	95:5:0:0:6,9:0,0:83,141:1,1
GL000216.1	160587	.	G	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	79:7:0:0:0,10:0,0:72,201:0,1	139:8:0:0:6,14:0,2:125,318:0,0
GL000216.1	165962	.	G	A	.	PASS	NT=ref;QSS=25;QSS_NT=25;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	170:17:1:0:2,8:3,10:146,452:2,12	382:35:9:0:17,44:12,46:312,902:6,25
GL000205.1	13278	.	C	T	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	148:1:0:0:0,0:147,169:0,0:0,1	300:1:0:0:0,0:291,325:0,0:8,11
GL000205.1	27067	.	G	A	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	143:13:0:0:0,1:0,0:130,150:0,1	277:22:0:0:10,13:0,0:245,286:0,0
GL000205.1	86437	.	T	A	.	PASS	NT=ref;QSS=34;QSS_NT=34;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||Y_RNA|misc_RNA|NON_CODING|ENST00000384023||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	151:5:0:0:3,3:2,3:2,2:139,143	389:8:0:0:19,25:2,2:2,2:358,362
GL000205.1	125895	.	A	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AC;SOMATIC;TQSS=2;TQSS_NT=2;EFF=DOWNSTREAM(MODIFIER|||||AC011841.2|pseudogene|NON_CODING|ENST00000389974||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	52:0:0:0:52,58:0,1:0,0:0,0	84:1:0:0:77,93:6,8:0,0:0,0
GL000205.1	127315	.	T	C	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||AC011841.2|pseudogene|NON_CODING|ENST00000389974||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	87:0:0:0:0,0:1,2:0,0:86,106	261:2:0:0:0,0:9,15:0,0:250,301
GL000205.1	136395	.	A	C	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=AA->AC;SOMATIC;TQSS=2;TQSS_NT=2;EFF=DOWNSTREAM(MODIFIER|||||AC011841.10|miRNA|NON_CODING|ENST00000581664||1),DOWNSTREAM(MODIFIER|||||AC011841.4|miRNA|NON_CODING|ENST00000408470||1),INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||AC011841.6|miRNA|NON_CODING|ENST00000408739||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	189:6:0:0:178,182:5,7:0,1:0,1	364:17:0:0:328,338:19,26:0,2:0,0
GL000219.1	62419	.	G	A	.	PASS	NT=ref;QSS=43;QSS_NT=43;SGT=GG->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER||||123|AL592183.1|protein_coding|CODING|ENST00000346061|6|1),INTRON(MODIFIER||||134|AL592183.1|protein_coding|CODING|ENST00000418749|6|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	133:5:0:0:0,3:1,1:127,149:0,0	289:4:0:0:9,18:0,1:276,315:0,0
GL000219.1	62440	.	C	T	.	PASS	NT=ref;QSS=25;QSS_NT=25;SGT=CC->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER||||123|AL592183.1|protein_coding|CODING|ENST00000346061|6|1),INTRON(MODIFIER||||134|AL592183.1|protein_coding|CODING|ENST00000418749|6|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	152:6:0:0:1,1:143,177:1,3:1,4	341:8:0:0:0,0:321,394:0,0:12,21
GL000219.1	64349	.	G	A	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER||||123|AL592183.1|protein_coding|CODING|ENST00000346061|6|1),INTRON(MODIFIER||||134|AL592183.1|protein_coding|CODING|ENST00000418749|6|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	84:10:0:0:1,3:0,0:73,87:0,0	190:32:0:0:10,15:1,1:147,176:0,0
GL000219.1	74308	.	T	G	.	PASS	NT=ref;QSS=65;QSS_NT=65;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||123|AL592183.1|protein_coding|CODING|ENST00000346061|6|1),INTRON(MODIFIER||||134|AL592183.1|protein_coding|CODING|ENST00000418749|6|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	216:27:0:0:0,1:0,0:1,1:188,244	458:54:0:0:0,0:1,2:14,16:389,509
GL000219.1	79373	.	A	G	.	PASS	NT=ref;QSS=31;QSS_NT=31;SGT=AA->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER||||123|AL592183.1|protein_coding|CODING|ENST00000346061|5|1),INTRON(MODIFIER||||134|AL592183.1|protein_coding|CODING|ENST00000418749|5|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	128:22:19:0:105,158:0,0:1,3:0,0	322:41:61:0:273,357:0,2:8,16:0,0
GL000219.1	86551	.	C	T	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=CC->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER||||123|AL592183.1|protein_coding|CODING|ENST00000346061|3|1),INTRON(MODIFIER||||134|AL592183.1|protein_coding|CODING|ENST00000418749|3|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	120:4:0:0:0,0:113,150:2,2:1,5	294:5:0:0:0,2:276,360:0,0:13,23
GL000219.1	91976	.	A	C	.	PASS	NT=ref;QSS=39;QSS_NT=39;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||123|AL592183.1|protein_coding|CODING|ENST00000346061|2|1),INTRON(MODIFIER||||134|AL592183.1|protein_coding|CODING|ENST00000418749|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	171:4:0:0:164,201:2,4:1,1:0,0	326:4:0:0:306,383:16,25:0,0:0,0
GL000219.1	92563	.	T	C	.	PASS	NT=ref;QSS=35;QSS_NT=35;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||123|AL592183.1|protein_coding|CODING|ENST00000346061|2|1),INTRON(MODIFIER||||134|AL592183.1|protein_coding|CODING|ENST00000418749|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	89:4:0:0:0,0:0,1:0,1:85,104	210:10:0:0:0,0:12,18:0,1:188,222
GL000219.1	95647	.	C	T	.	PASS	NT=ref;QSS=23;QSS_NT=23;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||123|AL592183.1|protein_coding|CODING|ENST00000346061|2|1),INTRON(MODIFIER||||134|AL592183.1|protein_coding|CODING|ENST00000418749|2|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	90:4:0:0:1,1:84,98:0,0:1,2	214:7:0:0:0,1:201,231:0,0:6,10
GL000219.1	97458	.	T	C	.	PASS	NT=ref;QSS=23;QSS_NT=23;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||123|AL592183.1|protein_coding|CODING|ENST00000346061|1|1),INTRON(MODIFIER||||134|AL592183.1|protein_coding|CODING|ENST00000418749|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	106:0:0:0:0,0:1,2:0,0:105,124	242:4:0:0:0,1:9,11:0,0:229,252
GL000219.1	100136	.	A	G	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=AA->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER||||123|AL592183.1|protein_coding|CODING|ENST00000346061||1),UPSTREAM(MODIFIER||||134|AL592183.1|protein_coding|CODING|ENST00000418749||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	212:3:0:0:208,239:0,2:1,5:0,0	421:5:0:0:405,465:0,0:11,13:0,0
GL000219.1	103538	.	C	A	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER||||123|AL592183.1|protein_coding|CODING|ENST00000346061||1),UPSTREAM(MODIFIER||||134|AL592183.1|protein_coding|CODING|ENST00000418749||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	105:2:0:0:1,2:102,111:0,0:0,0	209:2:0:0:8,17:199,214:0,0:0,0
GL000219.1	103560	.	A	T	.	PASS	NT=ref;QSS=23;QSS_NT=23;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER||||123|AL592183.1|protein_coding|CODING|ENST00000346061||1),UPSTREAM(MODIFIER||||134|AL592183.1|protein_coding|CODING|ENST00000418749||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	106:5:0:0:100,113:0,0:0,0:1,2	211:9:0:0:193,216:0,0:0,0:9,18
GL000219.1	107824	.	A	C	.	PASS	NT=ref;QSS=23;QSS_NT=23;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	148:3:0:0:142,172:2,5:0,0:1,1	279:1:0:0:268,350:10,18:0,0:0,0
GL000219.1	109036	.	A	T	.	PASS	NT=ref;QSS=30;QSS_NT=30;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	96:3:0:0:93,100:0,1:0,1:0,1	224:2:0:0:214,229:0,0:0,0:8,10
GL000219.1	117890	.	A	G	.	PASS	NT=ref;QSS=31;QSS_NT=31;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	127:3:0:0:124,162:0,0:0,1:0,0	238:1:0:0:230,297:0,0:7,14:0,0
GL000219.1	125091	.	T	C	.	PASS	NT=ref;QSS=24;QSS_NT=24;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	205:6:0:0:0,0:1,2:0,0:198,233	481:0:0:0:0,0:12,18:0,0:469,540
GL000219.1	136100	.	A	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	89:0:0:0:87,92:1,1:1,2:0,0	218:3:0:0:206,229:1,1:8,12:0,0
GL000219.1	136179	.	C	G	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=CC->CG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	96:3:0:0:1,1:91,94:1,3:0,5	223:5:0:0:0,0:206,223:12,19:0,2
GL000219.1	143276	.	T	C	.	PASS	NT=ref;QSS=31;QSS_NT=31;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	101:6:0:0:0,0:1,3:0,0:94,112	229:5:0:0:0,0:8,10:0,0:216,244
GL000219.1	164306	.	T	C	.	PASS	NT=ref;QSS=27;QSS_NT=27;SGT=TT->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=DOWNSTREAM(MODIFIER|||||AL592183.6|miRNA|NON_CODING|ENST00000458758||1),EXON(MODIFIER|||||AL592183.2|miRNA|NON_CODING|ENST00000459252|1|1),UPSTREAM(MODIFIER|||||AL592183.3|miRNA|NON_CODING|ENST00000459323||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	218:32:0:0:0,2:1,7:0,0:185,379	537:94:0:0:1,1:11,26:1,1:430,870
GL000219.1	169468	.	A	G	.	PASS	NT=ref;QSS=30;QSS_NT=30;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||AL592183.3|miRNA|NON_CODING|ENST00000459323||1),INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||AL592183.4|miRNA|NON_CODING|ENST00000459486||1),UPSTREAM(MODIFIER|||||AL592183.5|miRNA|NON_CODING|ENST00000459365||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	107:2:0:0:104,113:0,1:1,1:0,0	223:3:0:0:210,232:0,0:9,11:1,1
GL000224.1	21168	.	T	C	.	PASS	NT=ref;QSS=39;QSS_NT=39;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	163:5:0:0:0,0:1,2:0,0:157,164	400:5:0:0:0,0:13,20:0,1:382,390
GL000224.1	21198	.	C	T	.	PASS	NT=ref;QSS=35;QSS_NT=35;SGT=CC->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	156:2:0:0:0,0:151,155:2,2:1,2	406:5:0:0:0,0:383,391:0,1:18,26
GL000224.1	21217	.	C	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=CC->AC;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	154:2:0:0:2,3:150,153:0,1:0,0	391:5:0:0:18,26:368,377:0,1:0,0
GL000224.1	23458	.	C	G	.	PASS	NT=ref;QSS=18;QSS_NT=18;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	159:3:0:0:1,3:154,156:1,2:0,0	364:6:0:0:1,1:346,352:11,18:0,0
GL000224.1	23477	.	A	T	.	PASS	NT=ref;QSS=33;QSS_NT=33;SGT=AA->AT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	155:3:0:0:151,154:0,0:0,1:1,2	390:6:0:0:371,378:0,0:0,0:13,21
GL000224.1	23696	.	A	G	.	PASS	NT=ref;QSS=57;QSS_NT=57;SGT=AA->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	134:1:0:0:132,135:1,2:0,1:0,0	355:4:0:0:335,341:1,2:14,27:1,1
GL000224.1	49092	.	A	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=AA->AC;SOMATIC;TQSS=2;TQSS_NT=2;EFF=DOWNSTREAM(MODIFIER|||||AL591856.5|miRNA|NON_CODING|ENST00000584224||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	82:1:0:0:80,83:1,2:0,0:0,0	222:1:0:0:211,212:10,15:0,0:0,0
GL000224.1	49970	.	T	A	.	PASS	NT=ref;QSS=31;QSS_NT=31;SGT=TT->AT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=DOWNSTREAM(MODIFIER|||||AL591856.5|miRNA|NON_CODING|ENST00000584224||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	73:3:0:0:0,1:0,1:0,0:70,72	183:2:0:0:12,14:0,0:0,0:169,172
GL000224.1	49973	.	G	A	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=GG->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=DOWNSTREAM(MODIFIER|||||AL591856.5|miRNA|NON_CODING|ENST00000584224||1),INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	75:3:0:0:0,2:0,0:72,73:0,1	185:2:0:0:13,15:0,0:170,172:0,1
GL000224.1	55646	.	T	C	.	PASS	NT=ref;QSS=36;QSS_NT=36;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	92:0:0:0:0,0:0,0:0,0:92,93	184:2:0:0:0,0:7,9:0,0:175,178
GL000224.1	56487	.	G	A	.	PASS	NT=ref;QSS=31;QSS_NT=31;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	105:3:0:0:0,1:0,0:102,105:0,0	205:2:0:0:8,12:0,0:195,197:0,0
GL000224.1	56497	.	C	T	.	PASS	NT=ref;QSS=30;QSS_NT=30;SGT=CC->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	99:3:0:0:0,0:96,98:0,1:0,1	203:2:0:0:0,1:192,193:0,0:9,13
GL000224.1	56515	.	A	G	.	PASS	NT=ref;QSS=38;QSS_NT=38;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	98:1:0:0:94,96:1,1:1,1:1,1	202:0:0:0:184,184:0,0:10,15:8,8
GL000224.1	56538	.	G	C	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	97:0:0:0:0,0:1,2:96,97:0,0	200:0:0:0:0,0:8,11:192,192:0,0
GL000224.1	62406	.	C	T	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	84:0:0:0:0,0:84,84:0,0:0,2	189:1:0:0:0,0:181,184:1,1:6,11
GL000224.1	62445	.	A	C	.	PASS	NT=ref;QSS=28;QSS_NT=28;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	96:2:0:0:94,96:0,2:0,0:0,0	194:0:0:0:187,189:7,10:0,0:0,0
GL000224.1	62449	.	C	T	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	95:1:0:0:0,0:94,95:0,0:0,2	200:0:0:0:0,0:194,196:0,0:6,9
GL000224.1	157836	.	A	G	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	68:2:0:0:66,67:0,1:0,1:0,0	158:4:0:0:145,147:0,1:9,13:0,0
GL000224.1	160041	.	A	C	.	PASS	NT=ref;QSS=30;QSS_NT=30;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	114:5:0:0:105,110:2,2:2,4:0,1	255:3:0:0:233,240:18,20:1,2:0,0
GL000224.1	174853	.	T	G	.	PASS	NT=ref;QSS=34;QSS_NT=34;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	89:7:0:0:0,0:0,1:0,0:82,89	200:6:0:0:1,1:0,0:8,9:185,199
GL000195.1	87698	.	T	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=TT->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	106:0:0:0:0,0:1,2:1,1:104,108	238:4:0:0:0,0:12,12:0,0:222,234
GL000212.1	12208	.	T	G	.	PASS	NT=ref;QSS=29;QSS_NT=29;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	39:0:0:0:0,0:0,0:0,3:39,40	81:0:0:0:0,0:0,0:15,28:66,66
GL000193.1	11811	.	T	A	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=TT->AT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	87:3:0:0:1,4:0,0:0,0:83,90	191:13:0:0:7,17:0,0:1,2:170,185
GL000193.1	19559	.	T	C	.	PASS	NT=ref;QSS=44;QSS_NT=44;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	111:5:0:0:0,0:0,0:0,1:106,117	233:14:0:0:0,0:8,10:0,0:211,235
GL000193.1	35733	.	C	T	.	PASS	NT=ref;QSS=36;QSS_NT=36;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	90:6:0:0:0,0:84,98:0,0:0,0	156:17:0:0:0,0:128,157:1,1:10,12
GL000193.1	79764	.	G	T	.	PASS	NT=ref;QSS=30;QSS_NT=30;SGT=GG->GT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER||||54|AC018692.1|protein_coding|CODING|ENST00000400767|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	231:7:0:0:0,0:0,1:221,334:3,8	437:2:0:0:1,1:0,1:418,670:16,29
GL000193.1	81106	.	G	C	.	PASS	NT=ref;QSS=23;QSS_NT=23;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||54|AC018692.1|protein_coding|CODING|ENST00000400767|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	160:15:0:0:0,0:2,3:143,220:0,0	356:27:0:0:0,0:12,17:316,450:1,1
GL000193.1	81248	.	C	T	.	PASS	NT=ref;QSS=23;QSS_NT=23;SGT=CC->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER||||54|AC018692.1|protein_coding|CODING|ENST00000400767|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	224:6:0:0:0,0:216,313:0,1:2,3	408:10:0:0:1,1:381,532:1,3:15,18
GL000193.1	81293	.	G	A	.	PASS	NT=ref;QSS=76;QSS_NT=76;SGT=GG->AG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTRON(MODIFIER||||54|AC018692.1|protein_coding|CODING|ENST00000400767|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	253:9:0:0:1,3:0,0:243,350:0,0	522:10:0:0:20,23:0,0:492,657:0,0
GL000193.1	81302	.	C	G	.	PASS	NT=ref;QSS=33;QSS_NT=33;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||54|AC018692.1|protein_coding|CODING|ENST00000400767|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	247:7:0:0:0,0:237,335:3,4:0,0	527:8:0:0:0,0:497,656:22,25:0,0
GL000193.1	81349	.	C	G	.	PASS	NT=ref;QSS=28;QSS_NT=28;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||54|AC018692.1|protein_coding|CODING|ENST00000400767|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	228:1:0:0:1,1:223,304:3,5:0,0	511:6:0:0:2,3:482,618:21,23:0,0
GL000193.1	81420	.	C	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||54|AC018692.1|protein_coding|CODING|ENST00000400767|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	230:8:0:0:0,0:217,305:1,2:4,5	517:15:0:0:1,1:486,653:1,2:14,15
GL000193.1	85395	.	G	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||54|AC018692.1|protein_coding|CODING|ENST00000400767|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	114:2:0:0:1,1:0,2:110,173:1,3	273:6:0:0:1,2:0,2:253,376:13,14
GL000193.1	87325	.	T	C	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||54|AC018692.1|protein_coding|CODING|ENST00000400767|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	42:2:0:0:0,0:0,0:0,1:40,50	85:1:0:0:0,0:8,10:1,1:75,101
GL000193.1	88872	.	G	C	.	PASS	NT=ref;QSS=40;QSS_NT=40;SGT=GG->CG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=DOWNSTREAM(MODIFIER|||||AC018692.2|pseudogene|NON_CODING|ENST00000402833||1),INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER||||54|AC018692.1|protein_coding|CODING|ENST00000400767||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	249:12:0:0:0,0:1,4:236,359:0,1	492:8:0:0:0,0:20,21:464,734:0,0
GL000193.1	88899	.	C	T	.	PASS	NT=ref;QSS=26;QSS_NT=26;SGT=CC->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=DOWNSTREAM(MODIFIER|||||AC018692.2|pseudogene|NON_CODING|ENST00000402833||1),INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER||||54|AC018692.1|protein_coding|CODING|ENST00000400767||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	230:9:0:0:0,2:219,357:0,0:2,4	474:8:0:0:1,1:449,734:0,0:16,18
GL000193.1	88939	.	C	G	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->CG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=DOWNSTREAM(MODIFIER|||||AC018692.2|pseudogene|NON_CODING|ENST00000402833||1),INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER||||54|AC018692.1|protein_coding|CODING|ENST00000400767||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	233:8:0:0:0,1:221,359:4,4:0,0	506:7:0:0:1,1:481,756:17,20:0,0
GL000193.1	90405	.	G	C	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||AC018692.2|pseudogene|NON_CODING|ENST00000402833||1),DOWNSTREAM(MODIFIER|||||AC018692.3|pseudogene|NON_CODING|ENST00000536753||1),INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER||||54|AC018692.1|protein_coding|CODING|ENST00000400767||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	239:6:0:0:0,1:4,6:229,303:0,0	426:1:0:0:0,0:19,21:406,551:0,0
GL000193.1	93173	.	G	C	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||AC018692.3|pseudogene|NON_CODING|ENST00000536753||1),DOWNSTREAM(MODIFIER|||||AC018692.4|pseudogene|NON_CODING|ENST00000539902||1),INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER||||54|AC018692.1|protein_coding|CODING|ENST00000400767||1),UPSTREAM(MODIFIER|||||AC018692.2|pseudogene|NON_CODING|ENST00000402833||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	14:0:0:0:0,0:0,0:14,16:0,0	37:1:0:0:0,0:8,9:28,38:0,0
GL000194.1	56012	.	C	G	.	PASS	NT=ref;QSS=25;QSS_NT=25;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTRON(MODIFIER||||168|AC145212.1|protein_coding|CODING|ENST00000400839|1|1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	26:1:0:0:0,0:25,27:0,0:0,0	53:2:0:0:0,0:39,45:12,14:0,0
GL000194.1	68435	.	T	G	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	75:0:0:0:0,0:1,1:1,1:73,73	173:2:0:0:0,0:0,0:14,17:157,158
GL000194.1	70291	.	T	C	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=TT->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	72:0:4:0:0,0:0,2:2,2:70,80	194:2:3:0:0,0:8,8:1,1:183,201
GL000194.1	74751	.	A	T	.	PASS	NT=ref;QSS=23;QSS_NT=23;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	55:2:0:0:53,58:0,0:0,0:0,0	140:1:0:0:127,132:0,0:1,1:11,14
GL000194.1	93090	.	A	T	.	PASS	NT=ref;QSS=24;QSS_NT=24;SGT=AA->AT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	70:2:0:0:66,81:2,2:0,0:0,3	163:4:0:0:148,170:0,1:0,0:11,21
GL000194.1	101901	.	G	A	.	PASS	NT=ref;QSS=40;QSS_NT=40;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	89:1:0:0:0,1:0,0:88,90:0,0	178:0:0:0:8,11:0,0:170,171:0,0
GL000194.1	101924	.	C	G	.	PASS	NT=ref;QSS=33;QSS_NT=33;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	83:2:0:0:1,1:80,84:0,1:0,0	194:1:0:0:0,0:185,187:8,12:0,0
GL000194.1	143727	.	G	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	64:1:0:0:0,0:0,0:63,67:0,1	138:0:0:0:0,0:0,0:133,149:5,9
GL000194.1	186507	.	C	A	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->AC;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	125:16:0:0:0,5:109,142:0,0:0,0	271:37:0:0:11,23:223,292:0,0:0,0
GL000194.1	189740	.	G	T	.	PASS	NT=ref;QSS=23;QSS_NT=23;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	168:4:0:0:0,0:0,0:162,196:2,3	363:2:0:0:0,1:0,0:351,430:10,13
GL000225.1	2822	.	A	C	.	PASS	NT=ref;QSS=26;QSS_NT=26;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	192:26:0:0:164,569:2,17:0,5:0,0	462:85:0:0:368,1153:9,45:0,22:0,13
GL000225.1	10288	.	C	A	.	PASS	NT=ref;QSS=35;QSS_NT=35;SGT=CC->AC;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	88:15:0:0:0,3:73,135:0,0:0,0	170:39:0:0:8,14:123,257:0,0:0,0
GL000225.1	11024	.	T	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	125:7:0:0:0,0:2,3:0,0:116,250	276:15:0:0:0,0:9,17:0,1:252,535
GL000225.1	24992	.	G	T	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	63:12:0:0:0,1:0,0:51,145:0,2	172:31:0:0:0,2:0,2:134,294:7,14
GL000225.1	27333	.	T	A	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	133:14:0:0:2,11:0,1:0,0:117,328	253:32:0:0:10,23:0,1:1,4:210,616
GL000225.1	40770	.	A	T	.	PASS	NT=ref;QSS=55;QSS_NT=55;SGT=AA->AT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	346:71:0:0:268,586:2,5:3,8:2,6	657:149:0:0:482,1045:7,11:4,12:15,27
GL000225.1	49589	.	C	A	.	PASS	NT=ref;QSS=43;QSS_NT=43;SGT=CC->AC;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	137:22:0:0:0,4:113,204:1,3:1,5	281:40:0:0:10,18:229,426:0,0:2,8
GL000225.1	58279	.	C	T	.	PASS	NT=ref;QSS=17;QSS_NT=17;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	110:7:0:0:0,1:102,124:0,0:1,3	167:5:0:0:0,1:154,172:0,1:8,10
GL000225.1	69316	.	A	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	75:4:0:0:69,93:2,2:0,2:0,0	154:5:0:0:142,167:0,0:7,14:0,0
GL000225.1	70188	.	C	T	.	PASS	NT=ref;QSS=16;QSS_NT=16;SGT=CC->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	149:10:0:0:0,0:138,203:0,0:1,6	269:14:0:0:3,5:238,353:0,0:14,24
GL000225.1	74717	.	G	A	.	PASS	NT=ref;QSS=19;QSS_NT=19;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	101:16:0:0:1,2:0,4:84,131:0,1	181:24:0:0:7,14:2,4:148,240:0,4
GL000225.1	80761	.	G	T	.	PASS	NT=ref;QSS=38;QSS_NT=38;SGT=GG->GT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	184:54:0:0:1,4:0,1:129,444:0,13	431:112:0:0:0,5:0,0:307,905:12,40
GL000225.1	88117	.	C	T	.	PASS	NT=ref;QSS=27;QSS_NT=27;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	237:14:0:0:0,3:220,1821:0,15:3,61	486:39:0:0:0,4:434,3685:1,32:12,152
GL000225.1	92268	.	T	C	.	PASS	NT=ref;QSS=26;QSS_NT=26;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	67:13:1:0:0,2:0,2:0,0:54,131	135:13:0:0:2,3:8,12:0,0:112,257
GL000225.1	106493	.	C	T	.	PASS	NT=ref;QSS=24;QSS_NT=24;SGT=CC->CT;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	62:8:0:0:0,0:54,371:0,0:0,13	144:16:0:0:1,2:120,788:0,1:7,39
GL000225.1	107315	.	T	G	.	PASS	NT=ref;QSS=43;QSS_NT=43;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	173:9:0:0:0,0:2,3:1,9:161,487	360:24:0:0:1,1:1,2:23,48:311,968
GL000225.1	107348	.	G	A	.	PASS	NT=ref;QSS=20;QSS_NT=20;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	163:48:0:0:1,8:2,4:111,468:1,3	343:74:0:0:17,42:3,4:248,933:1,8
GL000225.1	107485	.	A	G	.	PASS	NT=ref;QSS=27;QSS_NT=27;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	171:42:0:0:128,352:0,1:1,6:0,0	360:88:0:0:249,736:0,2:23,35:0,2
GL000225.1	108078	.	T	G	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	38:11:0:0:0,0:0,0:0,2:27,89	89:25:0:0:0,4:0,0:6,16:58,191
GL000225.1	116523	.	A	G	.	PASS	NT=ref;QSS=23;QSS_NT=23;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	100:3:0:0:96,173:0,1:1,4:0,1	176:10:0:0:155,305:2,2:8,17:1,2
GL000225.1	118479	.	A	T	.	PASS	NT=ref;QSS=21;QSS_NT=21;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	263:32:0:0:226,503:1,7:1,8:3,14	492:75:0:0:387,917:4,8:4,22:22,41
GL000225.1	121135	.	C	T	.	PASS	NT=ref;QSS=58;QSS_NT=58;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	233:29:0:0:1,2:201,423:0,0:2,13	464:55:0:0:3,4:392,811:0,1:14,30
GL000225.1	122800	.	A	G	.	PASS	NT=ref;QSS=36;QSS_NT=36;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	207:14:0:0:191,352:0,1:2,7:0,0	425:45:0:0:369,706:0,4:11,27:0,0
GL000225.1	134712	.	T	C	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	182:20:0:0:0,0:2,4:0,0:160,271	405:48:0:0:0,0:14,21:0,0:343,541
GL000225.1	137265	.	G	A	.	PASS	NT=ref;QSS=35;QSS_NT=35;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	271:42:8:0:3,24:0,3:226,688:0,0	541:94:10:0:17,68:4,22:426,1303:0,1
GL000225.1	138147	.	A	C	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=AA->AC;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	150:30:0:0:117,286:0,8:0,2:3,3	290:61:0:0:217,525:10,23:0,4:2,7
GL000225.1	149376	.	C	A	.	PASS	NT=ref;QSS=43;QSS_NT=43;SGT=CC->AC;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	208:3:0:0:2,5:203,265:0,0:0,1	510:2:0:0:21,29:487,620:0,0:0,0
GL000225.1	149427	.	G	A	.	PASS	NT=ref;QSS=50;QSS_NT=50;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	204:35:0:0:2,4:1,2:166,254:0,1	468:61:0:0:23,28:0,0:384,563:0,1
GL000225.1	187444	.	A	C	.	PASS	NT=ref;QSS=40;QSS_NT=40;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1;EFF=DOWNSTREAM(MODIFIER|||||U2|snRNA|NON_CODING|ENST00000459529||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	84:2:0:0:82,97:0,0:0,0:0,0	221:1:0:0:203,231:17,18:0,0:0,0
GL000225.1	190281	.	G	C	.	PASS	NT=ref;QSS=23;QSS_NT=23;SGT=GG->CG;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	55:4:0:0:0,0:0,8:51,138:0,0	178:9:0:0:0,0:7,24:162,308:0,1
GL000225.1	205329	.	A	T	.	PASS	NT=ref;QSS=22;QSS_NT=22;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	43:0:0:0:43,59:0,0:0,0:0,0	112:1:0:0:102,133:0,0:0,0:9,9
GL000225.1	207483	.	A	C	.	PASS	NT=ref;QSS=15;QSS_NT=15;SGT=AA->AC;SOMATIC;TQSS=2;TQSS_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:FDP:SDP:SUBDP:AU:CU:GU:TU	17:0:0:0:17,23:0,2:0,0:0,0	36:1:0:0:27,37:8,13:0,0:0,0