#CHROM	POS	ID	REF	ALT	QUAL	FILTER	INFO	FORMAT	NORMAL	TUMOR
2	89870688	.	C	CCCCTGT	.	PASS	IC=1;IHP=2;NT=ref;QSI=43;QSI_NT=43;RC=0;RU=CCCTGT;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50	90:90:93,284:0,0:1,5:86.19:6.63:0.00	217:217:191,616:8,10:21,26:195.64:19.31:0.00
2	92247853	.	TTGTATAAACAAGCAAATATTTATACTAGTTTTAATACTGA	T	.	PASS	IC=0;IHP=4;NT=ref;QSI=30;QSI_NT=30;RC=1;RU=TGTATAAACAAGCAAATATTTATACTAGTTTTAATACTGA;SGT=ref->het;SOMATIC;TQSI=2;TQSI_NT=2;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50	74:74:103,146:0,0:5,3:77.23:3.46:0.00	172:172:228,336:5,5:20,17:181.75:7.92:0.00
4	120566063	.	AAGTCTGT	A	.	PASS	IC=0;IHP=3;NT=ref;QSI=36;QSI_NT=36;RC=1;RU=AGTCTGT;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50	29:29:22,22:0,0:0,0:28.92:0.35:0.00	75:75:35,35:28,28:2,2:71.35:11.41:0.00
4	120566071	.	G	GC	.	PASS	IC=1;IHP=4;NT=ref;QSI=37;QSI_NT=37;RC=0;RU=C;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50	21:21:21,21:0,0:0,0:28.68:0.27:0.00	66:66:36,36:28,28:1,1:70.88:11.34:0.00
4	120566084	.	AGCAAC	A	.	PASS	IC=0;IHP=5;NT=ref;QSI=35;QSI_NT=35;RC=1;RU=GCAAC;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50	21:21:20,20:0,0:1,1:28.55:0.10:0.00	67:67:37,37:28,28:3,3:69.94:11.46:0.00
10	125014118	.	C	CTACCATCATCA	.	PASS	IC=1;IHP=4;NT=ref;QSI=40;QSI_NT=40;RC=0;RU=TACCATCATCA;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50	62:62:80,108:0,0:4,5:66.82:9.71:0.00	116:116:121,150:4,4:12,20:137.21:21.52:0.00
14	36199736	rs140686182	AGTGTTGTTAGG	A	.	PASS	IC=0;IHP=6;NT=ref;QSI=33;QSI_NT=33;RC=1;RU=GTGTTGTTAGG;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1;EFF=INTRON(MODIFIER||||2036|RALGAPA1|protein_coding|CODING|ENST00000389698|12|1),INTRON(MODIFIER||||2049|RALGAPA1|protein_coding|CODING|ENST00000382366|12|1),INTRON(MODIFIER||||2082|RALGAPA1|protein_coding|CODING|ENST00000553892|12|1),INTRON(MODIFIER||||2083|RALGAPA1|protein_coding|CODING|ENST00000258840|12|1),INTRON(MODIFIER||||2083|RALGAPA1|protein_coding|CODING|ENST00000307138|12|1),INTRON(MODIFIER|||||RALGAPA1|processed_transcript|CODING|ENST00000554704|7|1),INTRON(MODIFIER|||||RALGAPA1|retained_intron|CODING|ENST00000554652|7|1),INTRON(MODIFIER|||||RALGAPA1|retained_intron|CODING|ENST00000557069|2|1);RSPOS=36199737;dbSNPBuildID=134;SSR=0;SAO=0;VP=05000008000500000e000200;GENEINFO=RALGAPA1:253959;WGT=1;VC=DIV;INT;ASP;KGPilot123;KGPROD;OTHERKG	DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50	36:36:33,33:0,0:4,4:34.1:0.10:0.00	75:75:40,40:15,15:20,20:65.91:0.24:0.00
16	33041253	.	T	TTGCAATAAA	.	PASS	IC=1;IHP=3;NT=ref;QSI=34;QSI_NT=34;RC=0;RU=TGCAATAAA;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1),UPSTREAM(MODIFIER|||||RP11-19N8.2|processed_transcript|NON_CODING|ENST00000567619||1),UPSTREAM(MODIFIER|||||RP11-19N8.2|transcribed_processed_pseudogene|NON_CODING|ENST00000562500||1)	DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50	73:73:72,85:0,0:1,1:69.71:1.19:0.00	144:144:122,144:5,6:15,23:153.01:2.66:0.00
20	46700768	.	AG	A	.	PASS	IC=0;IHP=6;NT=ref;QSI=33;QSI_NT=33;RC=1;RU=G;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50	18:18:19,19:0,0:1,3:15.65:1.51:0.00	51:51:24,26:17,17:15,15:45.31:8.97:0.00
21	11187491	rs140494737	CTTATA	C	.	PASS	IC=0;IHP=3;NT=ref;QSI=76;QSI_NT=76;RC=1;RU=TTATA;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1);RSPOS=11187492;dbSNPBuildID=134;SSR=0;SAO=0;VP=05000000000500000c000200;WGT=1;VC=DIV;ASP;KGPilot123;KGPROD	DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50	54:54:270,507:1,1:6,2:125.14:6.24:0.00	106:106:71,102:11,11:627,1056:307.17:11.95:0.00
X	130816919	.	G	GA	.	PASS	IC=1;IHP=3;NT=ref;QSI=32;QSI_NT=32;RC=0;RU=A;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50	19:19:15,16:0,0:9,9:27.92:1.83:0.00	53:53:24,30:17,17:14,15:64.52:6.91:0.00
GL000217.1	130753	.	AT	A	.	PASS	IC=0;IHP=4;NT=ref;QSI=31;QSI_NT=31;RC=1;RU=T;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1;EFF=INTERGENIC(MODIFIER||||||||||1)	DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50	29:29:29,30:0,0:0,0:29.85:0.02:0.00	68:68:49,52:17,17:1,1:77.38:0.80:0.00