#! /bin/sh

# Automatically generated by mqsub

#$ -S /bin/sh

source /home/rcorbett/.bashrc; /home/rcorbett/slx_service_rc/trunk/run_tophat.py --lane /projects/analysis/analysis5/HS1801/61074AAXX_7 --outdir /projects/NBL/HS1801/61074AAXX_7/tophat_wj --insertSize 237  --known /projects/NBL/reference_files/UCSC/all.gtf.gff3