[GENOME_REF] species=homo_sapiens genome=hg19a genome_fasta=GRCh37-lite.fa transcript_file=jaguarJunctionRef.GRCh37.68.txt [RUN_TIME] out_dir=/jaguar seq_length=100 [HEADER_ANNOTATION] SQ_header_AS=NCBI-Build-37 SQ_header_UR=GRCh37-lite.fa SQ_header_SP=Homo sapiens