May 9, 2014


Latest version of JAGuaR
------------------------
JAGuaR_v2.1.tar.gz  


PET Fastq samples used in paper
-------------------------------
samples/
sample1_1.fastq.gz  
sample1_3.fastq.gz
sample2_1.fastq.gz       
sample2_2.fastq.gz
sample3_1.fastq.gz  
sample3_3.fastq.gz  


Simulated data used in paper
----------------------------
simulation/
single_end1_clean.fastq  
single_end2_clean.fastq


Reference folder
----------------
Example files used to create reference for alignment.


Example
-------
PET fastq's that can be used for a testing.  
Configuratation, reference and transcript annotation file are available for 
creating the JAGuaR reference.