Information for 25-AAGAGTGCGA (Motif 39)

C G T A C G T A A C T G C G T A A C T G A C G T A C T G A G T C A C T G C G T A
Reverse Opposite:
C G A T A G T C A C T G A G T C C G T A A G T C A C G T A G T C A C G T A C G T
p-value:1e-15
log p-value:-3.542e+01
Information Content per bp:1.982
Number of Target Sequences with motif18.0
Percentage of Target Sequences with motif0.13%
Number of Background Sequences with motif3.4
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets116.4 +/- 44.0bp
Average Position of motif in Background95.8 +/- 89.2bp
Strand Bias (log2 ratio + to - strand density)0.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0114.1_Egr1_2/Jaspar

Match Rank:1
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--AAGAGTGCGA----
TGCGGAGTGGGACTGG
 A C G T A C G T C G T A C G T A A C T G C G T A A C T G A C G T A C T G A G T C A C T G C G T A A C G T A C G T A C G T A C G T
A C G T A C T G G A T C A C T G C T A G T C G A C T A G C A G T C T A G C A T G C A T G C G T A G A T C G C A T C T A G A C T G

PB0146.1_Mafk_2/Jaspar

Match Rank:2
Score:0.60
Offset:-3
Orientation:forward strand
Alignment:---AAGAGTGCGA--
GAAAAAATTGCAAGG
 A C G T A C G T A C G T C G T A C G T A A C T G C G T A A C T G A C G T A C T G A G T C A C T G C G T A A C G T A C G T
T C A G G T C A T C G A C T G A C T G A G C T A G C T A C A G T A G C T C A T G A G T C T G C A G T C A A T C G T C A G

Tbr1(T-box)/Cortex-Tbr1-ChIP-Seq(GSE71384)/Homer

Match Rank:3
Score:0.58
Offset:1
Orientation:forward strand
Alignment:AAGAGTGCGA-
-AAGGTGTKAA
 C G T A C G T A A C T G C G T A A C T G A C G T A C T G A G T C A C T G C G T A A C G T
A C G T C T G A C T G A C A T G A T C G A G C T A T C G G A C T C A T G C T G A G T C A

ZNF519(Zf)/HEK293-ZNF519.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:4
Score:0.57
Offset:2
Orientation:forward strand
Alignment:AAGAGTGCGA--
--GAGSCCGAGC
 C G T A C G T A A C T G C G T A A C T G A C G T A C T G A G T C A C T G C G T A A C G T A C G T
A C G T A C G T A C T G C G T A A C T G A T G C T G A C G A T C A T C G T G C A A C T G A G T C

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:5
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:AAGAGTGCGA
TTGAGTGSTT
 C G T A C G T A A C T G C G T A A C T G A C G T A C T G A G T C A C T G C G T A
G C A T A C G T C T A G C G T A C A T G C G A T C T A G A T C G G A C T G A C T

PB0013.1_Eomes_1/Jaspar

Match Rank:6
Score:0.55
Offset:-2
Orientation:forward strand
Alignment:--AAGAGTGCGA-----
GAAAAGGTGTGAAAATT
 A C G T A C G T C G T A C G T A A C T G C G T A A C T G A C G T A C T G A G T C A C T G C G T A A C G T A C G T A C G T A C G T A C G T
A C G T T C G A G C T A C T G A C T G A C T A G A C T G A G C T C T A G G A C T A C T G C T G A G T C A G T C A G C T A G A C T G A C T

EOMES/MA0800.1/Jaspar

Match Rank:7
Score:0.55
Offset:1
Orientation:forward strand
Alignment:AAGAGTGCGA----
-AAGGTGTGAAAAT
 C G T A C G T A A C T G C G T A A C T G A C G T A C T G A G T C A C T G C G T A A C G T A C G T A C G T A C G T
A C G T C T G A C T G A C T A G A C T G A G C T T C A G G A C T A C T G T C G A G C T A G T C A C G T A G A C T

POL002.1_INR/Jaspar

Match Rank:8
Score:0.55
Offset:0
Orientation:reverse strand
Alignment:AAGAGTGCGA
NNNANTGA--
 C G T A C G T A A C T G C G T A A C T G A C G T A C T G A G T C A C T G C G T A
T C G A T C G A C T A G C T G A T A G C C G A T A C T G G T C A A C G T A C G T

YY1(Zf)/Promoter/Homer

Match Rank:9
Score:0.54
Offset:-1
Orientation:forward strand
Alignment:-AAGAGTGCGA-
CAAGATGGCGGC
 A C G T C G T A C G T A A C T G C G T A A C T G A C G T A C T G A G T C A C T G C G T A A C G T
T A G C C G T A C T G A T A C G C G T A A C G T A C T G A C T G A G T C T A C G C T A G G T A C

PB0137.1_Irf3_2/Jaspar

Match Rank:10
Score:0.53
Offset:-4
Orientation:forward strand
Alignment:----AAGAGTGCGA
GGAGAAAGGTGCGA
 A C G T A C G T A C G T A C G T C G T A C G T A A C T G C G T A A C T G A C G T A C T G A G T C A C T G C G T A
C T A G C A T G C G T A C T A G C G T A G C T A C G T A A T C G T A C G C G A T A T C G A G T C C T A G C T G A