Information for 24-GTCACTAG (Motif 38)

A C T G A C G T A G T C C G T A A G T C A C G T C G T A A C T G
Reverse Opposite:
A G T C A C G T C G T A A C T G A C G T A C T G C G T A A G T C
p-value:1e-16
log p-value:-3.859e+01
Information Content per bp:1.530
Number of Target Sequences with motif103.0
Percentage of Target Sequences with motif0.76%
Number of Background Sequences with motif105.2
Percentage of Background Sequences with motif0.29%
Average Position of motif in Targets90.2 +/- 55.2bp
Average Position of motif in Background119.0 +/- 50.0bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer

Match Rank:1
Score:0.73
Offset:0
Orientation:reverse strand
Alignment:GTCACTAG--
GTCACATGAY
 A C T G A C G T A G T C C G T A A G T C A C G T C G T A A C T G A C G T A C G T
T C A G G A C T G T A C G T C A A G T C T C G A G C A T A T C G T C G A A G T C

HMBOX1/MA0895.1/Jaspar

Match Rank:2
Score:0.69
Offset:-1
Orientation:reverse strand
Alignment:-GTCACTAG-
GTTAACTAGN
 A C G T A C T G A C G T A G T C C G T A A G T C A C G T C G T A A C T G A C G T
A T C G C A G T G C A T C G T A G C T A T A G C G A C T G C T A T C A G A C G T

Mitf/MA0620.1/Jaspar

Match Rank:3
Score:0.68
Offset:-1
Orientation:forward strand
Alignment:-GTCACTAG-
GGTCACGTGG
 A C G T A C T G A C G T A G T C C G T A A G T C A C G T C G T A A C T G A C G T
C T A G T C A G A C G T T G A C G T C A A G T C T C A G G C A T A C T G T C A G

Pax2/MA0067.1/Jaspar

Match Rank:4
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-GTCACTAG
AGTCACGC-
 A C G T A C T G A C G T A G T C C G T A A G T C A C G T C G T A A C T G
G C T A C T A G G C A T A G T C C T G A G A T C C A T G A T C G A C G T

USF1/MA0093.2/Jaspar

Match Rank:5
Score:0.65
Offset:-1
Orientation:reverse strand
Alignment:-GTCACTAG--
GGTCACGTGGC
 A C G T A C T G A C G T A G T C C G T A A G T C A C G T C G T A A C T G A C G T A C G T
C T A G C T A G G A C T A G T C C G T A A G T C T C A G C G A T A C T G T C A G A G T C

PH0040.1_Hmbox1/Jaspar

Match Rank:6
Score:0.65
Offset:-4
Orientation:reverse strand
Alignment:----GTCACTAG-----
GANGTTAACTAGTTTNN
 A C G T A C G T A C G T A C G T A C T G A C G T A G T C C G T A A G T C A C G T C G T A A C T G A C G T A C G T A C G T A C G T A C G T
T A C G G C T A G C A T T C A G G C A T G C A T C G T A G T C A A G T C A G C T G T C A T C A G G C A T G A C T G A C T C G A T A G T C

PB0159.1_Rfx4_2/Jaspar

Match Rank:7
Score:0.64
Offset:-3
Orientation:reverse strand
Alignment:---GTCACTAG----
NNNGTAACTANGNNA
 A C G T A C G T A C G T A C T G A C G T A G T C C G T A A G T C A C G T C G T A A C T G A C G T A C G T A C G T A C G T
A C G T A T G C A T C G A C T G G A C T G T C A C G T A G T A C A G C T G C T A C A T G A T C G T A C G C A G T C G T A

USF2/MA0526.1/Jaspar

Match Rank:8
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-GTCACTAG--
GGTCACATGAC
 A C G T A C T G A C G T A G T C C G T A A G T C A C G T C G T A A C T G A C G T A C G T
C T A G T C A G A G C T A G T C C G T A A G T C T C G A A C G T A C T G T C G A A G T C

Arntl/MA0603.1/Jaspar

Match Rank:9
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-GTCACTAG-
GGTCACGTGC
 A C G T A C T G A C G T A G T C C G T A A G T C A C G T C G T A A C T G A C G T
C A T G T C A G C A G T G T A C G C T A A G T C C T A G G A C T C A T G G A T C

Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer

Match Rank:10
Score:0.63
Offset:-4
Orientation:forward strand
Alignment:----GTCACTAG----
GTAGGTCACTGGGTCA
 A C G T A C G T A C G T A C G T A C T G A C G T A G T C C G T A A G T C A C G T C G T A A C T G A C G T A C G T A C G T A C G T
A T C G A G C T C T G A C T A G A C T G A C G T G T A C G C T A A T G C A C G T C T A G C A T G T A C G C G A T A T G C C G T A