Information for 17-GGATCCKW (Motif 28)

C T A G T C A G G T C A A C G T T G A C A G T C C A T G C G T A
Reverse Opposite:
G C A T G T A C T C A G A C T G T G C A A C G T A G T C G A T C
p-value:1e-29
log p-value:-6.771e+01
Information Content per bp:1.540
Number of Target Sequences with motif2604.0
Percentage of Target Sequences with motif19.29%
Number of Background Sequences with motif5651.8
Percentage of Background Sequences with motif15.63%
Average Position of motif in Targets99.8 +/- 56.5bp
Average Position of motif in Background101.2 +/- 57.6bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.10
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RHOXF1/MA0719.1/Jaspar

Match Rank:1
Score:0.69
Offset:-1
Orientation:forward strand
Alignment:-GGATCCKW
ATAATCCC-
 A C G T C T A G T C A G G T C A A C G T T G A C A G T C C A T G C G T A
G C T A C G A T C T G A C G T A A C G T A G T C A G T C G T A C A C G T

POL013.1_MED-1/Jaspar

Match Rank:2
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-GGATCCKW
CGGAGC---
 A C G T C T A G T C A G G T C A A C G T T G A C A G T C C A T G C G T A
A T G C A C T G A C T G C G T A A C T G A G T C A C G T A C G T A C G T

SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer

Match Rank:3
Score:0.59
Offset:0
Orientation:forward strand
Alignment:GGATCCKW--
ACATCCTGNT
 C T A G T C A G G T C A A C G T T G A C A G T C C A T G C G T A A C G T A C G T
C T G A A T G C C G T A A C G T A G T C A G T C A C G T A C T G A T C G G C A T

PB0181.1_Spdef_2/Jaspar

Match Rank:4
Score:0.58
Offset:-4
Orientation:forward strand
Alignment:----GGATCCKW----
GATAACATCCTAGTAG
 A C G T A C G T A C G T A C G T C T A G T C A G G T C A A C G T T G A C A G T C C A T G C G T A A C G T A C G T A C G T A C G T
C T A G C G T A A C G T G C T A C T G A A G T C C G T A C G A T G A T C A G T C A G C T G C T A A C T G G C A T C G T A T C A G

PB0077.1_Spdef_1/Jaspar

Match Rank:5
Score:0.56
Offset:-2
Orientation:forward strand
Alignment:--GGATCCKW------
GTACATCCGGATTTTT
 A C G T A C G T C T A G T C A G G T C A A C G T T G A C A G T C C A T G C G T A A C G T A C G T A C G T A C G T A C G T A C G T
T C A G G A C T C T G A A G T C C G T A C G A T T A G C G T A C A C T G A T C G C T G A G C A T G C A T G A C T A G C T A G C T

Dmbx1/MA0883.1/Jaspar

Match Rank:6
Score:0.56
Offset:-5
Orientation:reverse strand
Alignment:-----GGATCCKW----
NNNATTAATCCGNTTNA
 A C G T A C G T A C G T A C G T A C G T C T A G T C A G G T C A A C G T T G A C A G T C C A T G C G T A A C G T A C G T A C G T A C G T
G C A T C G A T T A G C T G C A G A C T C G A T C G T A C G T A A C G T A T G C A G T C A C T G C A T G G C A T G A C T G A T C C G T A

PH0025.1_Dmbx1/Jaspar

Match Rank:7
Score:0.56
Offset:-5
Orientation:reverse strand
Alignment:-----GGATCCKW----
NNNATTAATCCGNTTNA
 A C G T A C G T A C G T A C G T A C G T C T A G T C A G G T C A A C G T T G A C A G T C C A T G C G T A A C G T A C G T A C G T A C G T
G C A T C G A T T A G C T G C A G A C T C G A T C G T A C G T A A C G T A T G C A G T C A C T G C A T G G C A T G A C T G A T C C G T A

OTX2/MA0712.1/Jaspar

Match Rank:8
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-GGATCCKW
TTAATCCT-
 A C G T C T A G T C A G G T C A A C G T T G A C A G T C C A T G C G T A
G A C T G C A T C G T A C G T A C A G T G A T C A G T C A C G T A C G T

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:9
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:GGATCCKW
TGACCT--
 C T A G T C A G G T C A A C G T T G A C A G T C C A T G C G T A
A C G T C A T G G C T A G T A C G T A C G A C T A C G T A C G T

PB0153.1_Nr2f2_2/Jaspar

Match Rank:10
Score:0.55
Offset:-4
Orientation:reverse strand
Alignment:----GGATCCKW----
NNNNTGACCCGGCGCG
 A C G T A C G T A C G T A C G T C T A G T C A G G T C A A C G T T G A C A G T C C A T G C G T A A C G T A C G T A C G T A C G T
C G A T T C G A T A G C A T C G A G C T T C A G G T C A G T A C G T A C A G T C T A C G T C A G G T A C A C T G G T A C A C T G