Information for 20-ATGAATATMATT (Motif 23)

C G T A A C G T A C T G C G T A C G T A A C G T C G T A A C G T G T C A C G T A A C G T A C G T
Reverse Opposite:
C G T A C G T A A C G T C A G T C G T A A C G T C G T A A C G T A C G T A G T C C G T A A C G T
p-value:1e-34
log p-value:-8.047e+01
Information Content per bp:1.952
Number of Target Sequences with motif29.0
Percentage of Target Sequences with motif0.21%
Number of Background Sequences with motif2.9
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets113.9 +/- 60.9bp
Average Position of motif in Background162.0 +/- 39.9bp
Strand Bias (log2 ratio + to - strand density)-1.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:1
Score:0.71
Offset:0
Orientation:forward strand
Alignment:ATGAATATMATT
ATGMATATDC--
 C G T A A C G T A C T G C G T A C G T A A C G T C G T A A C G T G T C A C G T A A C G T A C G T
G C T A A C G T C T A G G T A C G C T A G A C T C T G A G C A T C A T G G A T C A C G T A C G T

Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer

Match Rank:2
Score:0.69
Offset:0
Orientation:forward strand
Alignment:ATGAATATMATT
ATGAATATTC--
 C G T A A C G T A C T G C G T A C G T A A C G T C G T A A C G T G T C A C G T A A C G T A C G T
G C T A A G C T T A C G G T C A C T G A C G A T C T G A G C A T C A G T A G T C A C G T A C G T

PB0178.1_Sox8_2/Jaspar

Match Rank:3
Score:0.69
Offset:-6
Orientation:reverse strand
Alignment:------ATGAATATMATT
NNTNTCATGAATGT----
 A C G T A C G T A C G T A C G T A C G T A C G T C G T A A C G T A C T G C G T A C G T A A C G T C G T A A C G T G T C A C G T A A C G T A C G T
A T G C T A C G C A G T A C T G C G A T G A T C T G C A A G C T C T A G C G T A T C G A C G A T C T A G G A C T A C G T A C G T A C G T A C G T

PB0064.1_Sox14_1/Jaspar

Match Rank:4
Score:0.68
Offset:-1
Orientation:reverse strand
Alignment:-ATGAATATMATT---
NNTAATTATAATTNNN
 A C G T C G T A A C G T A C T G C G T A C G T A A C G T C G T A A C G T G T C A C G T A A C G T A C G T A C G T A C G T A C G T
C A T G G T C A G C A T G C T A G C T A C G A T C G A T C T G A G A C T C G T A G C T A C G A T C G A T C G T A C T A G G T A C

OCT:OCT(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer

Match Rank:5
Score:0.68
Offset:0
Orientation:forward strand
Alignment:ATGAATATMATT---
ATGAATATTCATGAG
 C G T A A C G T A C T G C G T A C G T A A C G T C G T A A C G T G T C A C G T A A C G T A C G T A C G T A C G T A C G T
G C T A A C G T C T A G G T C A C G T A A C G T C G T A C G A T C A G T A G T C C G T A A C G T C T A G C T G A A T C G

PB0079.1_Sry_1/Jaspar

Match Rank:6
Score:0.67
Offset:-1
Orientation:reverse strand
Alignment:-ATGAATATMATT---
NANTATTATAATTNNN
 A C G T C G T A A C G T A C T G C G T A C G T A A C G T C G T A A C G T G T C A C G T A A C G T A C G T A C G T A C G T A C G T
A C T G G C T A G C T A G A C T C G T A C G A T C G A T C T G A G A C T C G T A C G T A C G A T C G A T G T C A C G A T T G C A

PB0069.1_Sox21_1/Jaspar

Match Rank:7
Score:0.67
Offset:-1
Orientation:forward strand
Alignment:-ATGAATATMATT---
TTTAATTATAATTAAG
 A C G T C G T A A C G T A C T G C G T A C G T A A C G T C G T A A C G T G T C A C G T A A C G T A C G T A C G T A C G T A C G T
G A C T G C A T G A C T G C T A C G T A C G A T C G A T C T G A G A C T C G T A C G T A C G A T C G A T C G T A C G T A C A T G

PB0170.1_Sox17_2/Jaspar

Match Rank:8
Score:0.65
Offset:-5
Orientation:reverse strand
Alignment:-----ATGAATATMATT
NTTNTATGAATGTGNNC
 A C G T A C G T A C G T A C G T A C G T C G T A A C G T A C T G C G T A C G T A A C G T C G T A A C G T G T C A C G T A A C G T A C G T
G C T A G C A T A G C T C T A G A G C T T C G A A G C T A C T G G C T A C T G A C G A T T C A G C A G T C A T G T C A G C G A T A T G C

PB0174.1_Sox30_2/Jaspar

Match Rank:9
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-ATGAATATMATT---
TAAGATTATAATACGG
 A C G T C G T A A C G T A C T G C G T A C G T A A C G T C G T A A C G T G T C A C G T A A C G T A C G T A C G T A C G T A C G T
G A C T G T C A C G T A A C T G G T C A C G A T A G C T G T C A A C G T T C G A C G T A C A G T T G C A T A G C T A C G T A C G

PH0017.1_Cux1_2/Jaspar

Match Rank:10
Score:0.61
Offset:-2
Orientation:reverse strand
Alignment:--ATGAATATMATT-
TAGTGATCATCATTA
 A C G T A C G T C G T A A C G T A C T G C G T A C G T A A C G T C G T A A C G T G T C A C G T A A C G T A C G T A C G T
G A C T G C T A C A T G A G C T C A T G G C T A C G A T G A T C C G T A C A G T G A T C T C G A A G C T A C G T G C T A