Information for 12-VAGGCCATACAV (Motif 8)

T G A C C G T A C T A G T A C G T A G C G T A C G C T A A C G T C T G A T G A C G T C A T C A G
Reverse Opposite:
A G T C C A G T A C T G A G C T T G C A C G A T C A T G A T C G A T G C G A T C G C A T A C T G
p-value:1e-506
log p-value:-1.167e+03
Information Content per bp:1.449
Number of Target Sequences with motif256.0
Percentage of Target Sequences with motif0.82%
Number of Background Sequences with motif1.1
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets102.3 +/- 71.7bp
Average Position of motif in Background14.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

CDX2/MA0465.1/Jaspar

Match Rank:1
Score:0.66
Offset:1
Orientation:forward strand
Alignment:VAGGCCATACAV
-AAGCCATAAAA
 T G A C C G T A C T A G T A C G T A G C G T A C G C T A A C G T C T G A T G A C G T C A T C A G
A C G T T C G A C T G A T C A G A G T C G T A C C G T A A C G T C G T A C G T A C G T A T C G A

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:2
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-VAGGCCATACAV
TRAGGTCA-----
 A C G T T G A C C G T A C T A G T A C G T A G C G T A C G C T A A C G T C T G A T G A C G T C A T C A G
G C A T T C A G C T G A A T C G A C T G C G A T G A T C C T G A A C G T A C G T A C G T A C G T A C G T

PH0013.1_Cdx2/Jaspar

Match Rank:3
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-VAGGCCATACAV---
AAAGGTAATAAAATTT
 A C G T T G A C C G T A C T A G T A C G T A G C G T A C G C T A A C G T C T G A T G A C G T C A T C A G A C G T A C G T A C G T
C G T A T C G A T A C G C T A G T C A G A G C T G T C A C T G A C G A T C G T A C G T A G C T A G C T A G A C T C A G T G A C T

ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer

Match Rank:4
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-VAGGCCATACAV
CTAGGCCT-----
 A C G T T G A C C G T A C T A G T A C G T A G C G T A C G C T A A C G T C T G A T G A C G T C A T C A G
T A G C A G C T C T G A A C T G A T C G A T G C G T A C A C G T A C G T A C G T A C G T A C G T A C G T

PB0060.1_Smad3_1/Jaspar

Match Rank:5
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-VAGGCCATACAV----
CAAATCCAGACATCACA
 A C G T T G A C C G T A C T A G T A C G T A G C G T A C G C T A A C G T C T G A T G A C G T C A T C A G A C G T A C G T A C G T A C G T
G T A C C T G A C G T A C G T A C G A T A G T C A G T C T G C A C T A G G T C A G T A C C T G A A C G T A G T C G C T A T A C G G T C A

SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer

Match Rank:6
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-VAGGCCATACAV
CAAGGHCANV---
 A C G T T G A C C G T A C T A G T A C G T A G C G T A C G C T A A C G T C T G A T G A C G T C A T C A G
T G A C C G T A C T G A A C T G A C T G G A C T G A T C T G C A G T A C T A C G A C G T A C G T A C G T

PH0012.1_Cdx1/Jaspar

Match Rank:7
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-VAGGCCATACAV---
TAAGGTAATAAAATTA
 A C G T T G A C C G T A C T A G T A C G T A G C G T A C G C T A A C G T C T G A T G A C G T C A T C A G A C G T A C G T A C G T
C G A T C T G A T G C A C T A G T C A G G A C T G T C A C T G A C G A T G C T A C G T A G C T A G C T A A G C T C A G T G C T A

ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer

Match Rank:8
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-VAGGCCATACAV
CNAGGCCT-----
 A C G T T G A C C G T A C T A G T A C G T A G C G T A C G C T A A C G T C T G A T G A C G T C A T C A G
A T G C G A T C C T G A A C T G A C T G A G T C A G T C A G C T A C G T A C G T A C G T A C G T A C G T

NR4A2/MA0160.1/Jaspar

Match Rank:9
Score:0.60
Offset:0
Orientation:forward strand
Alignment:VAGGCCATACAV
AAGGTCAC----
 T G A C C G T A C T A G T A C G T A G C G T A C G C T A A C G T C T G A T G A C G T C A T C A G
C T G A C T G A A C T G C T A G G A C T A G T C C G T A T G A C A C G T A C G T A C G T A C G T

Hoxa11(Homeobox)/ChickenMSG-Hoxa11.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:10
Score:0.60
Offset:2
Orientation:reverse strand
Alignment:VAGGCCATACAV
--KGCCATAAAA
 T G A C C G T A C T A G T A C G T A G C G T A C G C T A A C G T C T G A T G A C G T C A T C A G
A C G T A C G T C A T G T A C G G A T C G T A C T C G A C A G T C G T A C G T A G C T A G T C A