Search results

71 items matching your search terms.
Filter the results.
Item type























New items since



Sort by relevance · date (newest first) · alphabetically
Software Release ABySS 1.0.2
by Shaun Jackman published Nov 21, 2008 last modified Jul 23, 2010 04:12 PM
Include a parallel binary compiled for OpenMPI.
Located in Platforms / / ABySS / Releases
Software Release ABySS 1.0.3
by Shaun Jackman published Feb 05, 2009 last modified Jul 23, 2010 04:14 PM
Tidy up the ends of blunt contigs. Merge blunt contigs that are connected by pairs and overlap.
Located in Platforms / / ABySS / Releases
Software Release ABySS 1.0.4
by Shaun Jackman published Mar 09, 2009 last modified Jul 23, 2010 04:15 PM
Remove the need to specify the parameters -e,--erode and -b,--bubbles. Use less disk space by using pipes to avoid intermediate files. Many improvements to the paired-end algorithm.
Located in Platforms / / ABySS / Releases
Software Release ABySS 1.0.5
by Shaun Jackman published Mar 11, 2009 last modified Mar 11, 2009 11:43 AM
Portability fixes.
Located in Platforms / / ABySS / Releases
Software Release ABySS 1.0.6
by Shaun Jackman published Mar 25, 2009 last modified Mar 25, 2009 10:41 AM
Fix a race condition in the erosion algorithm.
Located in Platforms / / ABySS / Releases
Software Release ABySS 1.0.7
by Shaun Jackman published Mar 31, 2009 last modified Mar 31, 2009 04:16 PM
The parallel MPI assembler is now deterministic; it will produce the same result every time.
Located in Platforms / / ABySS / Releases
Software Release ABySS 1.0.8
by Shaun Jackman published Apr 02, 2009 last modified Apr 02, 2009 02:58 PM
Fix the bug causing the error Assertion `marked == split' failed.
Located in Platforms / / ABySS / Releases
Software Release ABySS 1.0.9
by Shaun Jackman published May 15, 2009 last modified May 15, 2009 02:45 PM
Significantly reduce the memory usage of KAligner and ParseAligns. abyss-pe can read multiple input files and read FASTA or FASTQ files.
Located in Platforms / / ABySS / Releases
Software Release ABySS 1.0.10
by Shaun Jackman published Jun 18, 2009
ParseAligns is improved to handle any number of reads as long as mate pairs are found interleaved in the same file. Merge overlapping paired-end contigs that were previously being missed in some situations. Number paired-end contigs so that their IDs do not overlap with the single-end contigs.
Located in Platforms / / ABySS / Releases
Software Release ABySS 1.0.11
by Shaun Jackman published Jul 21, 2009
Assemble colour-space reads. Read files in qseq format. KAligner is multithreaded. Integrate with Sun Grid Engine (SGE). Prevent misassemblies mediated by tandem segmental duplications.
Located in Platforms / / ABySS / Releases