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by Lucas Swanson last modified Aug 13, 2013 10:40 AM
Located in Platforms / / Releases / Barnacle 1.0.0
Downloadable File Barnacle
by Lucas Swanson last modified Sep 23, 2013 03:44 PM
Located in Platforms / / Releases / Barnacle 1.0.3 (Beta release 3)
Software Project Barnacle
by Lucas Swanson published Oct 23, 2012 last modified Dec 05, 2012 10:15 AM
A pipeline for detecting and characterizing chimeric transcripts from long RNA sequences, such as those generated by de novo transcriptome assembly. It identifies sequences with a variety of anomalous alignment topologies, predicts partial tandem duplications (PTDs), internal tandem duplications (ITDS), and fusions from these sequences, and measures the coverage of the inferred chimeric transcripts relative to corresponding wild-type transcripts.
Located in Platforms / Bioinformatics / GSC Software Centre
Downloadable File Barnacle
by Lucas Swanson last modified Feb 24, 2016 08:50 AM
Located in Platforms / / Releases / Barnacle 1.0.4
Software Release Barnacle 0.1.2 (Alpha release)
by Lucas Swanson published Nov 15, 2012 last modified Nov 15, 2012 11:34 AM
Alpha release
Located in Platforms / / Barnacle / Releases
Downloadable File Barnacle 0.1.2 (alpha)
by Lucas Swanson last modified Nov 15, 2012 11:36 AM
Located in Platforms / / Releases / Barnacle 0.1.2 (Alpha release)
Downloadable File Barnacle 1.0.0
by Lucas Swanson last modified Nov 22, 2012 02:40 PM
Located in Platforms / / Releases / Barnacle 1.0.0
Software Release Barnacle 1.0.0
by Lucas Swanson published Nov 15, 2012 last modified Dec 17, 2012 04:14 PM
Initial Barnacle release
Located in Platforms / / Barnacle / Releases
Software Release Barnacle 1.0.3 (Beta release 3)
by Lucas Swanson published Sep 23, 2013
Update to increase compatibility with newer versions of Trans-ABySS (1.4.x), primarily allowing SAM-formatted contig-to-genome alignment files, and improvements to ITD detection.
Located in Platforms / / Barnacle / Releases
Software Release Barnacle 1.0.4
by Lucas Swanson published Feb 24, 2016
Bugfixes and stability improvements.
Located in Platforms / / Barnacle / Releases