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Software Project C header ChopStitch
by Hamid Mohamadi published Feb 02, 2017 last modified Jan 05, 2018 11:54 AM
Exon annotation and splice graph reconstruction using transcriptome assembly and whole genome sequencing data
Located in Platforms / Bioinformatics / GSC Software Centre
Software Release ChopStitch 0.0.1
by Hamid Mohamadi published Feb 02, 2017 last modified Jan 05, 2018 11:39 AM
See ChopStitch GitHub page for details.
Located in Platforms / / ChopStitch / Releases
Software Release ChopStitch 1.0.0
by Hamid Mohamadi published Jan 05, 2018
Fixing minor bugs. Improving performance.
Located in Platforms / / ChopStitch / Releases
Downloadable File ChopStitch-0.0.1
by Hamid Mohamadi last modified Jan 05, 2018 11:42 AM
Located in Platforms / / Releases / ChopStitch 0.0.1
Downloadable File ChopStitch-1.0.0
by Hamid Mohamadi last modified Jan 05, 2018 11:49 AM
Located in Platforms / / Releases / ChopStitch 1.0.0
Software Project Octet Stream DIDA
by Hamid Mohamadi published Apr 11, 2014 last modified May 26, 2016 10:12 AM
DIDA is a novel framework that performs the large-scale alignment tasks by distributing the indexing and alignment stages into smaller subtasks over a cluster of compute nodes.
Located in Platforms / Bioinformatics / GSC Software Centre
Software Release DIDA 0.1.1 (Unreleased)
by Hamid Mohamadi last modified Jun 17, 2014 05:53 PM
0.1.1
Located in Platforms / / DIDA / Releases
Software Release DIDA 0.1.2
by Hamid Mohamadi published Jul 10, 2014
New merging step compatible with BWA, Bowtie, Novoalign, and ABySS-map with different merging strategies.
Located in Platforms / / DIDA / Releases
Software Release DIDA 0.1.3
by Hamid Mohamadi published Dec 13, 2014
Adding wrapper and fully streamlined versions of DIDA.
Located in Platforms / / DIDA / Releases
Software Release DIDA 1.0.0
by Hamid Mohamadi published Feb 25, 2015
dida-wrapper, dida-mpi, and the batch versions are optimized. Fixed many portability issues and bugs, and improved some error messages.
Located in Platforms / / DIDA / Releases