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Software Release ABySS 1.0.16
by Shaun Jackman published Nov 13, 2009 last modified Nov 13, 2009 02:54 PM
Improve the performance and memory usage of KAligner and AdjList, particularly for very large data sets.
Located in Platforms / / ABySS / Releases
by Shaun Jackman last modified May 11, 2010 10:57 AM
Located in Platforms / / Releases / ABySS 1.0.16
Software Release ABySS 1.1.0
by Shaun Jackman published Dec 21, 2009 last modified Dec 21, 2009 11:38 AM
ABySS will expand tandem repeats when it is possible to determine the exact number of the repeat. The paired-end path-finding algorithm, SimpleGraph, is multithreaded. Fixed a bug in MergePaths that could misassemble repeats larger than the paired-end fragment size. The output format of AdjList, DistanceEst and SimpleGraph has changed.
Located in Platforms / / ABySS / Releases
by Shaun Jackman last modified May 11, 2010 10:57 AM
Located in Platforms / / Releases / ABySS 1.1.0
Software Release ABySS 1.1.1
by Shaun Jackman published Jan 19, 2010 last modified Jan 19, 2010 04:08 PM
Pop complex bubbles either completely or not at all. Choose better (typically lower) default values for the parameters e and c.
Located in Platforms / / ABySS / Releases
by Shaun Jackman last modified May 11, 2010 10:57 AM
Located in Platforms / / Releases / ABySS 1.1.1
Software Release ABySS 1.1.2
by Shaun Jackman published Feb 15, 2010 last modified Apr 30, 2010 01:55 PM
Pop bubbles resulting from indels. Read tar files. Fix performance issues in ParseAligns by syncing KAligner threads periodically.
Located in Platforms / / ABySS / Releases
by Shaun Jackman last modified May 11, 2010 10:57 AM
Located in Platforms / / Releases / ABySS 1.1.2
Software Release ABySS 1.3.2
by Shaun Jackman published Dec 13, 2011 last modified Dec 13, 2011 04:43 PM
Improve distance estimates between contigs, enable scaffolding by default, and remove small shim contigs that don't add useful sequence to the assembly. The default aligner is abyss-map. MergePaths uses a non-greedy algorithm that reduces sequence duplication but may reduce contiguity.
Located in Platforms / / ABySS / Releases
by Shaun Jackman last modified Dec 14, 2011 10:09 AM
Located in Platforms / / Releases / ABySS 1.3.2