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by Shaun Jackman last modified Sep 08, 2010 01:45 PM
Located in Platforms / / Releases / ABySS 1.2.3
Software Release ABySS 1.2.2
by Shaun Jackman published Aug 25, 2010 last modified Aug 25, 2010 12:28 PM
Merge contigs after popping bubbles. Handle multi-line FASTA sequences. Report the amount of memory used.
Located in Platforms / / ABySS / Releases
by Shaun Jackman last modified Aug 25, 2010 12:27 PM
Located in Platforms / / Releases / ABySS 1.2.2
Software Release ABySS 1.3.4
by Shaun Jackman published May 30, 2012 last modified May 30, 2012 04:07 PM
This release eliminates two sources of misassemblies, one in the path extension logic of SimpleGraph. Two, the default value of m, which is the minimum overlap required between two contigs to merge them, is increased from 30 to 50. This release also fixes various portability issues. A new script, abyss-fatoagp, is included to create an AGP file for GenBank submission.
Located in Platforms / / ABySS / Releases
by Shaun Jackman last modified May 30, 2012 03:21 PM
Located in Platforms / / Releases / ABySS 1.3.4
by Shaun Jackman last modified Jun 04, 2012 11:12 AM
Located in Platforms / / Releases / ABySS 1.3.4
Software Release ABySS 1.2.6
by Shaun Jackman published Feb 07, 2011 last modified Feb 07, 2011 04:44 PM
Sequence variants are popped if the two variants are at least 90% similar. Contigs that overlap by fewer than k-1 bp are found and may be merged.
Located in Platforms / / ABySS / Releases
by Shaun Jackman last modified Feb 07, 2011 04:46 PM
Located in Platforms / / Releases / ABySS 1.2.6
Software Release ABySS 1.2.1
by Shaun Jackman published Jul 12, 2010 last modified Jul 12, 2010 02:37 PM
Handle mate pair libraries with reverse-forward orientation as produced by circular, large-fragment libraries. Distance estimates are improved.
Located in Platforms / / ABySS / Releases
by Shaun Jackman last modified Jul 12, 2010 02:36 PM
Located in Platforms / / Releases / ABySS 1.2.1