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Downloadable File Source
by Anthony Raymond last modified May 01, 2014 03:57 PM
Located in Platforms / / Releases / ABySS 1.5.0
Downloadable File Test dataset
by Anthony Raymond last modified May 01, 2014 03:58 PM
Located in Platforms / / Releases / ABySS 1.5.0
Software Release ABySS 1.5.1
by Anthony Raymond published May 08, 2014
In this release we fix a compatibility issue with Trans-ABySS 1.5.0 where the output of abyss-filtergraph is not strand-specific. Also, we include additional FCC portability fixes.
Located in Platforms / / ABySS / Releases
Downloadable File Test dataset
by Anthony Raymond last modified May 08, 2014 12:49 PM
Located in Platforms / / Releases / ABySS 1.5.1
Software Release ABySS 1.3.7
by Anthony Raymond published Dec 11, 2013 last modified Dec 12, 2013 11:40 AM
Scaffolds can now be rescaffolded using long sequences such as RNA-Seq assemblies produced from Trans-ABySS. Added support for gcc 4.8+ and Mac OS X 10.9 Mavericks with clang. Finally, we've licensed ABySS under GPL for non-commercial purposes. Please read the LICENSE file for more details.
Located in Platforms / / ABySS / Releases
Downloadable File Source
by Anthony Raymond last modified Dec 11, 2013 02:03 PM
Located in Platforms / / Releases / ABySS 1.3.7
Downloadable File Test input data (paired end reads)
by Anthony Raymond last modified Dec 11, 2013 02:04 PM
Located in Platforms / / Releases / ABySS 1.3.7
by Anthony Raymond last modified May 29, 2014 11:18 AM
Located in Platforms / / Releases / ABySS 1.5.1
Software Release ABySS 1.5.2
by Anthony Raymond published Jul 10, 2014
In this release we introduce Konnector, a fast and memory-efficient tool to fill the gap between paired-end reads. Konnector determines the intervening sequence by building a Bloom filter de Bruijn graph and searching for paths between paired-end reads within the graph. A companion tool called abyss-bloom is also provided which can be used to construct reusable bloom filter files for input to Konnector; otherwise, Konnector will build an in-memory Bloom filter for one-time use. In addition to Konnector, we have fixed bugs related to compiling with GCC 4.8+ and parsing BWA output SAM files.
Located in Platforms / / ABySS / Releases
by Anthony Raymond last modified Jul 10, 2014 11:37 AM
Located in Platforms / / Releases / ABySS 1.5.2