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Software Release PAVFinder 0.4.0
by Readman Chiu published May 18, 2017
Merge PAVFinder_transcriptome
Located in Platforms / / PAVFinder / Releases
Downloadable File PAVFinder v0.4.0
by Readman Chiu last modified May 18, 2017 12:32 PM
Located in Platforms / / Releases / PAVFinder 0.4.0
Releases Section text/x-asm Releases
by Readman Chiu last modified Aug 11, 2015 04:34 PM
Existing and upcoming releases for this project.
Located in Platforms / / GSC Software Centre / PAVFinder
Software Project DER/PEM/Netscape-encoded X.509 certificate PAVFinder
by Readman Chiu published Aug 11, 2015 last modified Feb 05, 2016 09:59 AM
Structural variant caller on sequence assembly
Located in Platforms / Bioinformatics / GSC Software Centre
Software Release PAVFinder 0.2.0
by Readman Chiu published Aug 11, 2015
Initial release
Located in Platforms / / PAVFinder / Releases
Downloadable File PAVFinder v0.2.0
by Readman Chiu last modified Aug 11, 2015 05:00 PM
Located in Platforms / / Releases / PAVFinder 0.2.0
Software Release Trans-ABySS 1.3.5
by Readman Chiu published Sep 13, 2012 last modified Sep 13, 2012 09:59 AM
Lowered contig size filtering cutoff from 2k-1 to 2k-10; various improvement to fusions and indel code (see ChangeLog)
Located in Platforms / / Trans-ABySS / Releases
Downloadable File TransABySS 1.3.5
by Readman Chiu last modified Sep 13, 2012 09:47 AM
Located in Platforms / / Releases / Trans-ABySS 1.3.5
Software Release Trans-ABySS 1.4.8
by Readman Chiu published Sep 13, 2013 last modified Sep 16, 2013 11:37 AM
Identifies ITD, PTD, and read-throughs, uses qmake for running pipeline in SGE, and more.
Located in Platforms / / Trans-ABySS / Releases
Software Release KLEAT 2.0
by Readman Chiu published Apr 28, 2015
CLEAT has changed its name to KLEAT. In version 2.0, KLEAT is no longer dependent on the Trans-ABySS analysis framework. Instead, a standalone script is provided to run the assembly and alignments. In addition, the input formats to KLEAT have also been modified to adopt the more standard formats of BAM for alignments and GTF for annotation.
Located in Platforms / / KLEAT / Releases