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Software Release ABySS 1.0.13
by Shaun Jackman published Aug 26, 2009
Read files compressed with gzip (.gz) or bzip2 (.bz2).
Located in Platforms / / ABySS / Releases
by Shaun Jackman last modified May 11, 2010 10:57 AM
Located in Platforms / / Releases / ABySS 1.0.12
Software Release ABySS 1.0.12
by Shaun Jackman published Aug 19, 2009 last modified Aug 19, 2009 05:26 PM
Both ABYSS and KAligner are run only once per assembly, which speeds up the paired-end assembly stage by nearly a factor of two. The k-mer coverage information is correct in every contig file. A tool is included to convert colour-space contigs to nucleotide contigs. Discard reads that fail the chastity filter.
Located in Platforms / / ABySS / Releases
by Shaun Jackman last modified May 11, 2010 10:57 AM
Located in Platforms / / Releases / ABySS 1.0.11
Software Release ABySS 1.0.11
by Shaun Jackman published Jul 21, 2009
Assemble colour-space reads. Read files in qseq format. KAligner is multithreaded. Integrate with Sun Grid Engine (SGE). Prevent misassemblies mediated by tandem segmental duplications.
Located in Platforms / / ABySS / Releases
by Shaun Jackman last modified May 11, 2010 10:57 AM
Located in Platforms / / Releases / ABySS 1.0.10
Software Release ABySS 1.0.10
by Shaun Jackman published Jun 18, 2009
ParseAligns is improved to handle any number of reads as long as mate pairs are found interleaved in the same file. Merge overlapping paired-end contigs that were previously being missed in some situations. Number paired-end contigs so that their IDs do not overlap with the single-end contigs.
Located in Platforms / / ABySS / Releases
by Shaun Jackman last modified May 11, 2010 10:57 AM
Located in Platforms / / Releases / ABySS 1.0.9
Software Release ABySS 1.0.9
by Shaun Jackman published May 15, 2009 last modified May 15, 2009 02:45 PM
Significantly reduce the memory usage of KAligner and ParseAligns. abyss-pe can read multiple input files and read FASTA or FASTQ files.
Located in Platforms / / ABySS / Releases
by Shaun Jackman last modified May 11, 2010 10:57 AM
Located in Platforms / / Releases / ABySS 1.0.8