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Downloadable File KLEAT 2.0
by Readman Chiu last modified Apr 28, 2015 11:06 AM
Located in Platforms / / Releases / KLEAT 2.0
Software Release KLEAT 2.0
by Readman Chiu published Apr 28, 2015
CLEAT has changed its name to KLEAT. In version 2.0, KLEAT is no longer dependent on the Trans-ABySS analysis framework. Instead, a standalone script is provided to run the assembly and alignments. In addition, the input formats to KLEAT have also been modified to adopt the more standard formats of BAM for alignments and GTF for annotation.
Located in Platforms / / KLEAT / Releases
Downloadable File Trans-ABySS 1.4.8 (build 20130916)
by Readman Chiu last modified Sep 16, 2013 11:28 AM
Located in Platforms / / Releases / Trans-ABySS 1.4.8
Software Release Trans-ABySS 1.4.8
by Readman Chiu published Sep 13, 2013 last modified Sep 16, 2013 11:37 AM
Identifies ITD, PTD, and read-throughs, uses qmake for running pipeline in SGE, and more.
Located in Platforms / / Trans-ABySS / Releases
Software Release Trans-ABySS 1.4.4
by Readman Chiu published Oct 09, 2012 last modified Oct 09, 2012 02:02 PM
Supports both transcriptome and genome assemblies. A more robust pipeline and improvement to the 3 analysis suites (fusions, indels, and splicing).
Located in Platforms / / Trans-ABySS / Releases
Downloadable File TransABySS 1.3.5
by Readman Chiu last modified Sep 13, 2012 09:47 AM
Located in Platforms / / Releases / Trans-ABySS 1.3.5
Software Release Trans-ABySS 1.3.5
by Readman Chiu published Sep 13, 2012 last modified Sep 13, 2012 09:59 AM
Lowered contig size filtering cutoff from 2k-1 to 2k-10; various improvement to fusions and indel code (see ChangeLog)
Located in Platforms / / Trans-ABySS / Releases
Software Release Trans-ABySS 1.3.2
by Readman Chiu published Feb 29, 2012 last modified May 16, 2012 10:52 AM
Compatibility with ABySS 1.3.2; Streamlining of pipeline and configuration files; Analysis code improvement
Located in Platforms / / Trans-ABySS / Releases
by Readman Chiu last modified May 11, 2010 10:57 AM
Located in Platforms / / Releases / Trans-ABySS 0.1
Software Release Trans-ABySS 0.1
by Readman Chiu published Apr 14, 2010
Initial Trans-ABySS release
Located in Platforms / / Trans-ABySS / Releases