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Software Release Konnector 2.0
by Ben Vandervalk published Nov 03, 2015
First release following publication of Konnector 2.0
Located in Platforms / / Konnector / Releases
Software Release Sealer 1.9.0
by Ben Vandervalk published Nov 03, 2015
First official release of Sealer following publication.
Located in Platforms / / Sealer / Releases
by Ben Vandervalk last modified May 29, 2015 03:52 PM
Located in Platforms / / Releases / ABySS 1.9.0
Software Release ABySS 1.9.0
by Ben Vandervalk published May 29, 2015 last modified May 29, 2015 03:55 PM
This release introduces a new paired de Bruijn graph mode for assembly. In paired de Bruijn graph mode, ordinary k-mers are replaced by k-mer pairs, where each k-mer pair is separated by a fixed-size gap. The primary advantage of paired de Bruijn graph mode is that the span of a k-mer pair can be arbitrarily wide without consuming additional memory, and thus provides improved scalability for assemblies of long sequencing reads. This release also introduces a new tool called Sealer for closing scaffold gaps, new Konnector functionality for producing long pseudo-reads, and support for the DIDA (Distributed Indexing Disptached Alignment) parallel alignment framework.
Located in Platforms / / ABySS / Releases
Downloadable File Source code
by Ben Vandervalk last modified Apr 24, 2015 10:53 AM
Located in Platforms / / Releases / DIDA 1.0.1
Software Release DIDA 1.0.1
by Ben Vandervalk published Apr 24, 2015
This version introduces compression of intermediate files to reduce disk space requirements.
Located in Platforms / / DIDA / Releases
Downloadable File Test input data (paired end reads)
by Ben Vandervalk last modified Mar 05, 2013 03:47 PM
Located in Platforms / / Releases / ABySS 1.3.5
Downloadable File Test input data (paired end reads)
by Ben Vandervalk last modified Feb 04, 2013 04:41 PM
Located in Platforms / / Releases / ABySS 1.3.4