Existing and upcoming releases for this project.
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(Apr 18, 2017)
Implements targeted de novo assembly. Bug fix (in targeted assembly mode)
(Jun 09, 2015)
Included tie-breaker option (-q) when determining consensus from equal-coverage bases, useful when the read coverage is very low. The Zaire ebola virus read data (SRR2019530) is now provided for testing SSAKE.
(Apr 25, 2014)
This release includes an option (-j) for adjusting the kmer length when running SSAKE in TASR mode (-s).
A recent Illumina MiSeq dataset is available for testing SSAKE's performance: ftp://ftp.bcgsc.ca/supplementary/SSAKE