Releases

Existing and upcoming releases for this project.

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Experimental Releases

SSAKE 2.0 (Beta release) (Oct 23, 2007)
SSAKE can now handle error-rich [short sequence] data sets. For each seed sequence or contig being extended, SSAKE looks through the entire overlapping k-mer space and generates a consensus sequence from overhanging bases - It then extends contigs using that consensus, provided the bases it comprises pass user-defined thresholds.
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Stable Releases

SSAKE 3.8 (May 03, 2011)
v3.8+ is 30% faster than the previous release. Additional assembly control has been implemented (-w) that limits the generation of low depth of coverage contigs
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SSAKE 3.7 (Nov 17, 2010)
version 3.7 has improved support for seed-based assemblies, notably read-space restriction to that of the seed sequence (TASR behavior)
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SSAKE 3.6 (Aug 25, 2010)
v3.6 accepts an infinite number of sequence size libraries and offers preliminary support for paired-end Sanger reads.
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SSAKE 3.5 (May 28, 2010)
v3.5+ Uses mate pairs to help resolve repeats (preventing contig misassemblies) at run time and attempts to force-fill gaps with redundant sequences (improves contiguity and repeat resolution).
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SSAKE 3.4 (Apr 14, 2009)
Version 3.4 exploits paired-end reads to explore possible contig merges within scaffolds and allows users to track read position and individual base coverage for reads *fully embedded* within contigs.
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SSAKE 3.2.1 (Mar 31, 2009)
Optimized prefix tree implementation for faster assemblies with decreased memory usage.
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SSAKE 3.2 (Dec 07, 2007)
SSAKE 3.2 adjusts contig ends to find new extension possibilities. A bug that prevented SSAKE from exploring the entire read space for contig extensions seeded by shorter reads has been FIXED
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