Genome visualization application.
Sockeye is a Java application designed to assemble, view and work with genomic information in a 3D environment. Sockeye has been developed with a focus on displaying potential gene regulatory regions and for running and visualising the results from regulatory element detection approaches and algorithms.This program links to the Ensembl database and displays genomic features along tracks (stretches of DNA). It is very flexible with genomic data in GFF files. This application allows users to seamlessly visualize large amount of information at disparate locations in the genome. The application allows user to use varaity of algoritms for (mulitple) sequence alignment and displays comprehencive results of alignment.
Released Sep 12, 2006
More about this release…
- Get Sockeye for all platforms
- Java Web Start link
- If you are using Plone 3.2 or higher, you probably want to install this product with buildout. See our tutorial on installing add-on products with buildout for more information.