PAVFinder

Structural variant caller on sequence assembly

Project Description

PAVFinder (Post Assembly VariantFinder) is a Python package that detects genomic rearrangements from whole-genome shotgun assemblies and transcriptomic events such as gene fusions, internal tandem duplications, partial tandem duplications, and novel splice variants from RNA-seq assemblies.

PAVFinder is intended to replace the existing analysis suite of the trans-ABySS pipeline v1.4.8.

Current Release
PAVFinder 0.4.0

Released May 18, 2017

Merge PAVFinder_transcriptome
More about this release…

Download file Get PAVFinder for all platforms
PAVFinder v0.4.0

All Releases

Version Released Description Compatibility Licenses Status
0.4.0 May 18, 2017 Merge PAVFinder_transcriptome More about this release… BCCA (academic use) final
0.2.0 Aug 11, 2015 Initial release More about this release… BCCA (academic use) final