PAVFinder

Structural variant caller on sequence assembly

Project Description

PAVFinder (Post Assembly VariantFinder) is a Python package that detects genomic rearrangements from whole-genome shotgun assemblies and transcriptomic events such as gene fusions, internal tandem duplications, partial tandem duplications, and novel splice variants from RNA-seq assemblies.

PAVFinder is intended to replace the existing analysis suite of the trans-ABySS pipeline v1.4.8.

Current Release
PAVFinder 0.2.0

Released Aug 11, 2015

Initial release
More about this release…

Download file Get PAVFinder for Linux
PAVFinder v0.2.0

All Releases

Version Released Description Compatibility Licenses Status
0.2.0 Aug 11, 2015 Initial release More about this release… BCCA (academic use) final