Structural variant caller on sequence assembly
PAVFinder (Post Assembly VariantFinder) is a Python package that detects genomic rearrangements from whole-genome shotgun assemblies and transcriptomic events such as gene fusions, internal tandem duplications, partial tandem duplications, and novel splice variants from RNA-seq assemblies.
PAVFinder is intended to replace the existing analysis suite of the trans-ABySS pipeline v1.4.8.
Released Aug 11, 2015
More about this release…
- Get PAVFinder for Linux
- PAVFinder v0.2.0